RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17775
(211 letters)
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 46.7 bits (110), Expect = 1e-07
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 105 CCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFT 164
+VQM D A+ AM +L+ L +GK + + SK +V P E + KD+
Sbjct: 42 NALVQMADGNQAQLAMSHLNGHKL-HGKPIRITLSKH---QNVQLPREGQEDQGLTKDYG 97
Query: 165 GSRKNRFMNP 174
S +RF P
Sbjct: 98 NSPLHRFKKP 107
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 33.5 bits (76), Expect = 0.005
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 2 SAPTKLNVYKNDSESWDYTQPTL 24
S T LNV N+ +S DYT+P L
Sbjct: 82 SKLTSLNVKYNNDKSRDYTRPDL 104
Score = 29.6 bits (66), Expect = 0.11
Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 8/64 (12%)
Query: 104 GCCMVQMGDTLSAERAMGNLS-KTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKD 162
++Q D +SA+ A +L + + L + +SK + ++ +D
Sbjct: 46 FQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL-------TSLNVKYNNDKSRD 98
Query: 163 FTGS 166
+T
Sbjct: 99 YTRP 102
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 32.6 bits (74), Expect = 0.007
Identities = 18/98 (18%), Positives = 28/98 (28%), Gaps = 10/98 (10%)
Query: 51 GPPS-------MPNYRGGYPDDDYYGAPPAFEFERSYNSPVLDKFIGKPRGMSGPPSGPE 103
G P+ M D++Y E S V I PR + G
Sbjct: 1 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEI--PRPVDGVEVPGC 58
Query: 104 GCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQ 141
G V+ ++AM L+ + + Y
Sbjct: 59 GKIFVEFTSVFDCQKAMQGLTGRKF-ANRVVVTKYCDP 95
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 31.8 bits (72), Expect = 0.015
Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Query: 88 FIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140
+ K +G G V A++A L + G+RL + ++
Sbjct: 39 RLPKKMTGTGAH---RGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWAD 88
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 30.2 bits (67), Expect = 0.047
Identities = 5/37 (13%), Positives = 13/37 (35%)
Query: 105 CCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQ 141
V+ L + A L + + + ++K+
Sbjct: 47 IAFVEFTTELQSNAAKEALQGFKITPTHAMKITFAKK 83
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 30.0 bits (67), Expect = 0.081
Identities = 12/55 (21%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Query: 87 KFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQ 141
K+ + G G V D A+ A +LS + + L V Y
Sbjct: 30 KYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSGFNV-CNRYLVVLYYNA 83
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 29.0 bits (64), Expect = 0.13
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 180 NRIQPPSQLLHFFNAPPDITEEQLTDI 206
I PPS LH N PP ++EE L +
Sbjct: 4 QNIFPPSATLHLSNIPPSVSEEDLKVL 30
Score = 27.0 bits (59), Expect = 0.57
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 105 CCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140
++QMG A +A+ +L L L V++SK
Sbjct: 50 MALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 85
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 28.5 bits (63), Expect = 0.20
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 102 PEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140
G V + SA A+ ++ K + + Y+K
Sbjct: 45 MRGQAFVIFKEVSSATNALRSMQGFPF-YDKPMRIQYAK 82
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 28.5 bits (63), Expect = 0.23
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 102 PEGCCMVQMGDTLSAERAMGNLS-KTLLCNGKRLAVAYSK 140
G V+ +A A L + G ++AV +++
Sbjct: 44 NRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAE 83
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 28.1 bits (62), Expect = 0.25
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 86 DKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140
F + P C V SA++A+ L+ T + +L V ++
Sbjct: 22 GAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQV-ESVQLKVNIAR 75
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 27.7 bits (61), Expect = 0.30
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 104 GCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140
G V D A RA+ LS + +GK + V YS
Sbjct: 38 GYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSV 74
>d1vlfm2 c.81.1.1 (M:1-728) Transhydroxylase alpha subunit, AthL
{Pelobacter acidigallici [TaxId: 35816]}
Length = 728
Score = 28.1 bits (61), Expect = 0.98
Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 9/65 (13%)
Query: 25 GRTKDGPPSRPGPLLPEPPRRLPTPSG-----PPSMPNY-RGGYPDDDYYGAP---PAFE 75
GR KD P P + L T +G S+ N+ GY D+ PA+E
Sbjct: 660 GREKDTPDWGPRLNNQVCRKGLQTTTGKVEFIATSLKNFEEQGYIDEHRPSMHTYVPAWE 719
Query: 76 FERSY 80
++
Sbjct: 720 SQKHS 724
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 26.4 bits (58), Expect = 1.1
Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 104 GCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140
G VQ + +A A+ ++ G+ L + +
Sbjct: 51 GFAFVQYVNERNARAAVAGEDGRMI-AGQVLDINLAA 86
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 25.9 bits (56), Expect = 2.1
Identities = 4/24 (16%), Positives = 8/24 (33%)
Query: 184 PPSQLLHFFNAPPDITEEQLTDIS 207
S ++H + E L +
Sbjct: 13 SVSPVVHVRGLCESVVEADLVEAL 36
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 25.3 bits (55), Expect = 2.3
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 102 PEGCCMVQMGDTLSAERAMGNLSKTLLCNGKR-LAVAY 138
P G V+ A+ A+ L+ + G + L+V
Sbjct: 47 PRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRL 84
>d1m1ca_ e.42.1.1 (A:) L-A virus major coat protein {Saccharomyces
cerevisiae virus L-A [TaxId: 11008]}
Length = 651
Score = 26.5 bits (58), Expect = 3.1
Identities = 13/61 (21%), Positives = 19/61 (31%), Gaps = 1/61 (1%)
Query: 26 RTKDGPPSRPGPLLPEPPRRLPTPSGPPSMPNYRGGYPDDDYYGAPPAFEFERSYNSPVL 85
D P G + + P + +GP + D Y E S + P L
Sbjct: 143 SAGDIPMYHDGHVKIKLPVTIDDTAGPTQF-AWPSDRSTDSYPDWAQFSESFPSIDVPYL 201
Query: 86 D 86
D
Sbjct: 202 D 202
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 24.7 bits (53), Expect = 3.8
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 184 PPSQLLHFFNAPPDITEEQLTDI 206
P+ L F TE L ++
Sbjct: 7 DPNCCLGVFGLSLYTTERDLREV 29
>d1ddla_ b.121.4.6 (A:) Tymovirus coat protein {DYMV (Desmodium
yellow mottle tymovirus) [TaxId: 70821]}
Length = 188
Score = 25.1 bits (55), Expect = 5.1
Identities = 7/20 (35%), Positives = 7/20 (35%)
Query: 35 PGPLLPEPPRRLPTPSGPPS 54
L P LP P G P
Sbjct: 9 HQASLNTKPSLLPPPVGNPP 28
>d1qwla_ e.5.1.1 (A:) Catalase I {Helicobacter pylori [TaxId: 210]}
Length = 491
Score = 25.7 bits (56), Expect = 5.6
Identities = 9/44 (20%), Positives = 14/44 (31%)
Query: 31 PPSRPGPLLPEPPRRLPTPSGPPSMPNYRGGYPDDDYYGAPPAF 74
P + +P L + N+ D DYY P +
Sbjct: 389 PGYKEDKSARDPKFNLAHIEKEFEVWNWDYRADDSDYYTQPGDY 432
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 23.9 bits (51), Expect = 8.9
Identities = 4/23 (17%), Positives = 7/23 (30%)
Query: 184 PPSQLLHFFNAPPDITEEQLTDI 206
P+ L P+ + L
Sbjct: 15 NPTTRLWVGGLGPNTSLAALARE 37
>d1frfs_ e.19.1.1 (S:) Nickel-iron hydrogenase, small subunit
{Desulfovibrio fructosovorans [TaxId: 878]}
Length = 261
Score = 24.5 bits (53), Expect = 9.9
Identities = 13/59 (22%), Positives = 18/59 (30%), Gaps = 12/59 (20%)
Query: 60 GGYPDDDYYGAPPAFEFERSYNSPVLDK-------FIGKPRGMSGPPSGPEGCCMVQMG 111
G PD D G P F Y V D + +G C+ ++G
Sbjct: 161 KGIPDLDENGRPKLF-----YGELVHDNCPRLPHFEASEFAPSFDSEEAKKGFCLYELG 214
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.135 0.419
Gapped
Lambda K H
0.267 0.0524 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 847,587
Number of extensions: 41966
Number of successful extensions: 128
Number of sequences better than 10.0: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 28
Length of query: 211
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 130
Effective length of database: 1,295,466
Effective search space: 168410580
Effective search space used: 168410580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.9 bits)