Query psy17777
Match_columns 1375
No_of_seqs 829 out of 4393
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 22:44:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17777.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17777hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1y0f_A Collagen I alpha 1; nat 100.0 4.6E-84 1.6E-88 835.5 106.0 14 1127-1140 1017-1030(1054)
2 1y0f_A Collagen I alpha 1; nat 100.0 8.6E-84 3E-88 833.0 106.6 28 1115-1142 1002-1029(1054)
3 3hqv_A Collagen alpha-1(I) cha 100.0 1E-82 3.5E-87 834.8 104.3 51 1099-1149 989-1039(1056)
4 1y0f_B Collagen I alpha 2; nat 100.0 2.1E-82 7.1E-87 821.0 104.5 16 1125-1140 1005-1020(1026)
5 3hqv_B Collagen alpha-2(I) cha 100.0 4.2E-81 1.4E-85 821.1 109.0 20 5-24 5-24 (1028)
6 3hqv_A Collagen alpha-1(I) cha 100.0 1.7E-81 5.9E-86 823.2 103.0 101 1051-1152 938-1038(1056)
7 1t60_A Type IV collagen; basem 100.0 3.5E-81 1.2E-85 664.3 15.3 225 1145-1375 3-229 (229)
8 1t60_C Type IV collagen; basem 100.0 2.5E-79 8.5E-84 650.7 15.0 226 1145-1375 2-227 (227)
9 1t60_A Type IV collagen; basem 100.0 2.2E-52 7.7E-57 443.9 4.3 188 832-1020 10-226 (229)
10 1t60_C Type IV collagen; basem 100.0 1.1E-51 3.7E-56 439.0 4.3 189 832-1020 9-224 (227)
11 4ae2_A Procollagen III, collag 99.1 3.6E-12 1.2E-16 143.0 -0.6 135 1188-1345 29-175 (256)
12 1wck_A BCLA protein; collagen- 98.1 3.1E-07 1.1E-11 100.8 0.4 7 1223-1229 155-161 (220)
13 3gxe_F Collagen alpha-1(I) cha 89.6 0.2 6.9E-06 35.1 2.4 15 67-81 4-18 (23)
14 1pwb_A SP-D, PSP-D, pulmonary 32.0 9.7 0.00033 39.3 0.0 6 1227-1232 112-117 (177)
15 3f62_A Interleukin 18 binding 22.1 34 0.0012 32.7 1.7 45 1313-1361 14-63 (109)
No 1
>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} PDB: 1ygv_A 3hqv_A 3hr2_A
Probab=100.00 E-value=4.6e-84 Score=835.50 Aligned_cols=14 Identities=50% Similarity=1.063 Sum_probs=5.2
Q ss_pred CCCCCCCCCCCCCC
Q psy17777 1127 PPGENGLPGAPCES 1140 (1375)
Q Consensus 1127 ~~G~~G~pG~pg~~ 1140 (1375)
+++++++++.++++
T Consensus 1017 p~G~pGppGppGpp 1030 (1054)
T 1y0f_A 1017 PPGPPGPPGPPGPP 1030 (1054)
T ss_pred CCCCCCCCCCCCCC
Confidence 33333333333333
No 2
>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} PDB: 1ygv_A 3hqv_A 3hr2_A
Probab=100.00 E-value=8.6e-84 Score=832.98 Aligned_cols=28 Identities=43% Similarity=0.892 Sum_probs=11.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy17777 1115 RPGLDGLQGNTGPPGENGLPGAPCESTP 1142 (1375)
Q Consensus 1115 ~~G~~G~~G~~G~~G~~G~pG~pg~~g~ 1142 (1375)
.++.++.++..++.++++.++.++.+++
T Consensus 1002 p~G~~G~~G~~Gp~Gp~G~pGppGppGp 1029 (1054)
T 1y0f_A 1002 PPGPRGRTGDAGPAGPPGPPGPPGPPGP 1029 (1054)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 3333333334444444444444444443
No 3
>3hqv_A Collagen alpha-1(I) chain; native, in SITU, molecular envelope, triple-helical, supermolecular, supramolecular, packing structure; 5.16A {Rattus norvegicus} PDB: 3hr2_A
Probab=100.00 E-value=1e-82 Score=834.77 Aligned_cols=51 Identities=43% Similarity=0.778 Sum_probs=21.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccce
Q psy17777 1099 GPVGPPGLRGEPGPPGRPGLDGLQGNTGPPGENGLPGAPCESTPDYMTGIL 1149 (1375)
Q Consensus 1099 G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~pG~pg~~g~~~~~g~~ 1149 (1375)
|..|.+|++|..|++|..|.+|..+..+++++++++++++++..-|+.+||
T Consensus 989 G~~G~~G~~G~~G~~G~~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1056)
T 3hqv_A 989 GKDGLNGLPGPIGPPGPRGRTGDSGPAGPPGPPGPPGPPGPPSGGYDFSFL 1039 (1056)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccccccccccccc
Confidence 333333333333344444444444444444455555555554433333333
No 4
>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} PDB: 1ygv_B 3hqv_B 3hr2_B
Probab=100.00 E-value=2.1e-82 Score=820.99 Aligned_cols=16 Identities=50% Similarity=1.080 Sum_probs=6.0
Q ss_pred CCCCCCCCCCCCCCCC
Q psy17777 1125 TGPPGENGLPGAPCES 1140 (1375)
Q Consensus 1125 ~G~~G~~G~pG~pg~~ 1140 (1375)
.+++++++.++.++.+
T Consensus 1005 ~G~~G~pGppGpPGpp 1020 (1026)
T 1y0f_B 1005 AGPPGPPGPPGPPGPP 1020 (1026)
T ss_pred CCCCCCCCCCCCCCCC
Confidence 3333333333333333
No 5
>3hqv_B Collagen alpha-2(I) chain; native, in SITU, molecular envelope, triple-helical, supermolecular, supramolecular, packing structure; 5.16A {Rattus norvegicus} PDB: 3hr2_B
Probab=100.00 E-value=4.2e-81 Score=821.08 Aligned_cols=20 Identities=40% Similarity=0.733 Sum_probs=7.7
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q psy17777 5 DGLKGELGPPGYPGSIGFPG 24 (1375)
Q Consensus 5 ~G~~G~~G~~G~pG~~G~~G 24 (1375)
+|.+|.+|+.|++|.+|.+|
T Consensus 5 kG~~G~~G~~G~~G~~G~~G 24 (1028)
T 3hqv_B 5 KGVSAGPGPMGLMGPRGPPG 24 (1028)
T ss_pred CCCCCCCCCCCCCCCCCCCC
Confidence 33344333333333333333
No 6
>3hqv_A Collagen alpha-1(I) chain; native, in SITU, molecular envelope, triple-helical, supermolecular, supramolecular, packing structure; 5.16A {Rattus norvegicus} PDB: 3hr2_A
Probab=100.00 E-value=1.7e-81 Score=823.17 Aligned_cols=101 Identities=43% Similarity=0.828 Sum_probs=52.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy17777 1051 GDKGSEGREGKPGQPGYRGPPGPQGLPGLAGIPGARGDKGDWGPQGLDGPVGPPGLRGEPGPPGRPGLDGLQGNTGPPGE 1130 (1375)
Q Consensus 1051 G~~g~~g~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~ 1130 (1375)
|+++..+.+|.+|++|++|++|.+|++|.+|..|.+|++|++|++|.+|.+|.+|++|.+|+.|++|.+|.+|..++.++
T Consensus 938 G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~~~~~~ 1017 (1056)
T 3hqv_A 938 GEQGDRGIKGHRGFSGLQGPPGSPGSPGEQGPSGASGPAGPRGPPGSAGSPGKDGLNGLPGPIGPPGPRGRTGDSGPAGP 1017 (1056)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccc
Confidence 33333333444444444444444444444444455555555555555555555555555555555555555666666666
Q ss_pred CCCCCCCCCCCCCccccceeec
Q psy17777 1131 NGLPGAPCESTPDYMTGILMVK 1152 (1375)
Q Consensus 1131 ~G~pG~pg~~g~~~~~g~~~~r 1152 (1375)
++++++++++++. ..+|.|..
T Consensus 1018 ~~~~~~~~~~~~~-~~~~~~~~ 1038 (1056)
T 3hqv_A 1018 PGPPGPPGPPGPP-SGGYDFSF 1038 (1056)
T ss_pred ccccccccccccc-cccccccc
Confidence 6666666666643 34555543
No 7
>1t60_A Type IV collagen; basement membrane, NC1 domain, structural protein; 1.50A {Bos taurus} SCOP: d.169.1.6 d.169.1.6 PDB: 1m3d_A 1t61_A 1li1_A
Probab=100.00 E-value=3.5e-81 Score=664.29 Aligned_cols=225 Identities=65% Similarity=1.241 Sum_probs=219.5
Q ss_pred cccceeecccCCCCCCccCCCCCccceeeeeeeccccccccCccccccCcCcccccccccCCCCccccCCCCccccCCCC
Q psy17777 1145 MTGILMVKHSQTAEVPSCTDDKTNTQFTKLWEGYSLLYVEGNEQAHNQDLGFAGSCVRKFSTMPFLFCDPNNVCNYASRN 1224 (1375)
Q Consensus 1145 ~~g~~~~rhsqs~~~p~cp~g~~~~~~~~l~~Gysll~~~g~~~a~~qdlG~~gScl~~fstmPf~~C~~~~~C~~a~~~ 1224 (1375)
.++||||||||+++||.||.+ +++||+||||||+++|+++|+||||+++|||++|+||||++|+.+++||||+||
T Consensus 3 ~~g~l~trHSQt~~iP~CP~g-----~~~Lw~GYSll~~~g~~~~~gQDLG~~gSCl~rFstmPf~~C~~~~vC~~a~rn 77 (229)
T 1t60_A 3 DHGFLVTRHSQTTDDPQCPPG-----TKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRN 77 (229)
T ss_dssp --CEEEEEECSSSSCCCCCTT-----CEEEEEEEEEEEEEETTEEEECCTTSGGGEESSCCSCCEEEECTTSCEEESCSC
T ss_pred cceEEEEEecCCCCCCCCCCC-----CCccccceeeEEeecCCcccCcccCCCcchhccccCCCceEeCCCCeecccccC
Confidence 469999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCCCCCC--CCCccccceecccceeeccCcceeEeccCCcccCCCCCCCccceeeeEEEEEcCCCCCCCCCC
Q psy17777 1225 DRSYWLSTEEPMPMM--PVESTQIQKFISRCVVCEVPANVIAVHSQSVVIPECPVGWNSLWIGYSFVMHTAAGGDGGGQS 1302 (1375)
Q Consensus 1225 d~sYWld~n~~~p~~--p~~~d~i~~~isrC~vCe~pt~~iavhs~~~~ip~Cp~gW~~~w~Gysf~~~t~~g~~g~gq~ 1302 (1375)
|+||||+|++++||| ||++++|+.|||||+|||+++.+||||||+..||+||.+|++||+||||+|||+++++++||+
T Consensus 78 d~SyWLst~~~~p~~~~pv~~~~i~~yISRC~VCe~~~~~ia~HSQt~~IP~CP~Gw~~LW~GYSflm~t~~g~~g~gQd 157 (229)
T 1t60_A 78 DYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQA 157 (229)
T ss_dssp CEEEEEBCSCCCCTTCCCBCGGGGGGGBCEEEEEEESSCEEEEECSSSSCCCCCTTCEEEEEEEEEEEEECGGGCEEECC
T ss_pred CcceeecCCCCCCcccCCCCHHHhHhhhcccceeecccccEEEecCCCCCCCCCCCChhhccceeEEEEeccCCcccccc
Confidence 999999999999988 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhhhcccCCceeeecCCCceeeccCCcceeeeccCCCCCcCCCccccccCCcCCCceeeeEecccCC
Q psy17777 1303 LASPGSCLEEFRATPFIECNGEHGSCHYFANKLSFWLATIDPQDQWSRPQQQTLKSGNLRQRISRCQVCIKRN 1375 (1375)
Q Consensus 1303 l~spgscl~~~r~~~~iec~~~~g~c~~~~~~~s~w~~~~~~~~~~~~p~~~t~~~~~~~~~~src~vc~~~~ 1375 (1375)
|.||||||++||.+||||||. +++||||+|.+||||+|+++..||.+|+++|||+.+++++||||+||||+.
T Consensus 158 LgspGSCL~~Frt~PFi~C~~-~~~C~y~~n~~SfWLst~~~~~~~~~P~~~~~~~~~i~~~ISRC~VC~~~~ 229 (229)
T 1t60_A 158 LASPGSCLEEFRSAPFIECHG-RGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMRRT 229 (229)
T ss_dssp TTSGGGEESSCCSSCEEEEET-TSCEECCTTCEEEEEBCCCGGGTTSCCCCEEECTTSSGGGBCEEEEEEC--
T ss_pred ccCCcccccccccCCeEEeCC-CCcEeECCCCcceeeccCCccccccCcccccccccchhhhcccceeeeccC
Confidence 999999999999999999999 999999999999999999999999999999999999999999999999973
No 8
>1t60_C Type IV collagen; basement membrane, NC1 domain, structural protein; 1.50A {Bos taurus} PDB: 1m3d_C 1t61_C 1li1_C
Probab=100.00 E-value=2.5e-79 Score=650.67 Aligned_cols=226 Identities=67% Similarity=1.248 Sum_probs=220.7
Q ss_pred cccceeecccCCCCCCccCCCCCccceeeeeeeccccccccCccccccCcCcccccccccCCCCccccCCCCccccCCCC
Q psy17777 1145 MTGILMVKHSQTAEVPSCTDDKTNTQFTKLWEGYSLLYVEGNEQAHNQDLGFAGSCVRKFSTMPFLFCDPNNVCNYASRN 1224 (1375)
Q Consensus 1145 ~~g~~~~rhsqs~~~p~cp~g~~~~~~~~l~~Gysll~~~g~~~a~~qdlG~~gScl~~fstmPf~~C~~~~~C~~a~~~ 1224 (1375)
.+|||++||||+++||.||.+ +++||+||||||+++|+++|+|||++++|||++|+||||++|+.+++||||+||
T Consensus 2 ~~g~~~~~HSQt~~iP~CP~g-----~~~LW~GySll~~~g~~~~~gQdLgs~GSCL~~Fst~Pf~~C~~~~~C~yasrn 76 (227)
T 1t60_C 2 SIGYLLVKHSQTDQEPMCPVG-----MNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPGDVCYYASRN 76 (227)
T ss_dssp -CCEEEEEECSSSSCCCCCTT-----CEEEEEEEEEEEEEETTEEEECCTTSGGGEESSCCSCCEEEEETTTEEEESCSS
T ss_pred cceEEEEEecCCCCCCCCCCC-----chhhhcceeeeeeccCCcccCCcCCCCcchhhhhcCCCceEeCCCCeecccccC
Confidence 468999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCCCCCCCCCccccceecccceeeccCcceeEeccCCcccCCCCCCCccceeeeEEEEEcCCCCCCCCCCCC
Q psy17777 1225 DRSYWLSTEEPMPMMPVESTQIQKFISRCVVCEVPANVIAVHSQSVVIPECPVGWNSLWIGYSFVMHTAAGGDGGGQSLA 1304 (1375)
Q Consensus 1225 d~sYWld~n~~~p~~p~~~d~i~~~isrC~vCe~pt~~iavhs~~~~ip~Cp~gW~~~w~Gysf~~~t~~g~~g~gq~l~ 1304 (1375)
|+||||+|++++||||+++++|+.|||||+|||+++.+||||||+..||+||.+|++||+||||+|||+++++++||+|.
T Consensus 77 d~SyWLst~~~~p~~p~~~~~i~~~ISRC~VCe~~~~~ia~HSQt~~iP~CP~Gw~~LW~GYSflm~t~~g~~g~gQdL~ 156 (227)
T 1t60_C 77 DKSYWLSTTAPLPMMPVAEEDIRPYISRCSVCEAPAVAIAVHSQDVSIPHCPAGWRSLWIGYSFLMHTAAGDEGGGQSLV 156 (227)
T ss_dssp CEEEEEBCSCCCCSSCEEGGGTGGGBCEEEEEEESSCEEEEECSSSSCCCCCTTCEEEEEEEEEEEEECSTTCEEECCTT
T ss_pred CcceeccCCCCCccCCCchhHhhhhccccceecccCCceEEecCCCCCCCCCCCChhhcceeeEEEEcccCCccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhhcccCCceeeecCCCceeeccCCcceeeeccCCCCCcCCCccccccCCcCCCceeeeEecccCC
Q psy17777 1305 SPGSCLEEFRATPFIECNGEHGSCHYFANKLSFWLATIDPQDQWSRPQQQTLKSGNLRQRISRCQVCIKRN 1375 (1375)
Q Consensus 1305 spgscl~~~r~~~~iec~~~~g~c~~~~~~~s~w~~~~~~~~~~~~p~~~t~~~~~~~~~~src~vc~~~~ 1375 (1375)
||||||++||.+||||||+++++||||+|.+||||+|+++..||.+|+++|||+.+++++||||+||||+.
T Consensus 157 spGSCL~~Frt~PFi~C~~~~g~C~y~~n~~SfWLst~~~~~~~~~P~~~~~~~~~i~~~ISRC~VC~~~~ 227 (227)
T 1t60_C 157 SPGSCLEDFRATPFIECNGARGTCHYYANKYSFWLTTIPEQSFQGTPSADTLKAGLIRTHISRCQVCMKNL 227 (227)
T ss_dssp SGGGEESSCCSSCEEEEETTTTEEECCTTCEEEEEBCCSSSSEESSCCCEEECTTTGGGGBCEEEEEEC--
T ss_pred CCcccccccccCCeEEecCCCCeeeecCCCCceeeeccCccccccCCcccccchhhhhhhcccceeeeccC
Confidence 99999999999999999976999999999999999999999999999999999999999999999999973
No 9
>1t60_A Type IV collagen; basement membrane, NC1 domain, structural protein; 1.50A {Bos taurus} SCOP: d.169.1.6 d.169.1.6 PDB: 1m3d_A 1t61_A 1li1_A
Probab=100.00 E-value=2.2e-52 Score=443.94 Aligned_cols=188 Identities=54% Similarity=1.035 Sum_probs=179.0
Q ss_pred CCCCCCCCCCCCCCCCCCCC-------------------------cCcccc--cccccccccceeccCCCcccccCCCCC
Q psy17777 832 KENRDPRDGMDPGVYPDLWD-------------------------PRFCRI--LRPEVLHNAVLILRNDRSYWLSTEEPM 884 (1375)
Q Consensus 832 ~~~g~~g~~~~pg~~~~~~~-------------------------~~~~~~--~~~~~~~~~~~a~rn~~sywlst~~~~ 884 (1375)
+|++..-+|.||..+-.+|+ ++|++| ++|+.+++|+||+||||||||||+|+|
T Consensus 10 rHSQt~~iP~CP~g~~~Lw~GYSll~~~g~~~~~gQDLG~~gSCl~rFstmPf~~C~~~~vC~~a~rnd~SyWLst~~~~ 89 (229)
T 1t60_A 10 RHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPM 89 (229)
T ss_dssp EECSSSSCCCCCTTCEEEEEEEEEEEEEETTEEEECCTTSGGGEESSCCSCCEEEECTTSCEEESCSCCEEEEEBCSCCC
T ss_pred EecCCCCCCCCCCCCCccccceeeEEeecCCcccCcccCCCcchhccccCCCceEeCCCCeecccccCCcceeecCCCCC
Confidence 47777788888888777766 667777 889999999999999999999999999
Q ss_pred CCC--CccccccccccccccccccCcceEEEeccccccCCCCCCcccccccCCcccccCCCCCCCCCCCCCCCCcccCcc
Q psy17777 885 PMM--PVESTQIQKFISRCVVCEVPANVIAVHSQSVVIPECPVGWNSLWIGYSFVMHTAAGGDGGGQSLASPGSCLEEFR 962 (1375)
Q Consensus 885 p~~--pv~~~~~~~~isrc~vce~~~~~~a~hsq~~~ip~cp~gw~~l~~~~~~~~~~g~~g~~g~~~~~spGscl~~~~ 962 (1375)
||+ ||.+.+|++|||||+|||+++.+||||||+..||+||.+|++||.+|||+||++++.+.+.|.|.||||||+.||
T Consensus 90 p~~~~pv~~~~i~~yISRC~VCe~~~~~ia~HSQt~~IP~CP~Gw~~LW~GYSflm~t~~g~~g~gQdLgspGSCL~~Fr 169 (229)
T 1t60_A 90 PMSMAPITGENIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFR 169 (229)
T ss_dssp CTTCCCBCGGGGGGGBCEEEEEEESSCEEEEECSSSSCCCCCTTCEEEEEEEEEEEEECGGGCEEECCTTSGGGEESSCC
T ss_pred CcccCCCCHHHhHhhhcccceeecccccEEEecCCCCCCCCCCCChhhccceeEEEEeccCCccccccccCCcccccccc
Confidence 987 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccCCCCCCCCccccccceeEeeeCCCccccccccccccccccccccccccccC
Q psy17777 963 ATPFIECNGEHGSCHYFANKLSFWLATIDPQDQWSRPQQQTLKSGNLRQRISRCQLFL 1020 (1375)
Q Consensus 963 ~~pfie~~G~~G~~~~~g~~~~fwl~~i~~~~~~~~p~~~tlk~g~~~~risrC~g~~ 1020 (1375)
..|||||++ +++|+|+.|.+||||+++++..||.+|.+++||+.+++++||||+||+
T Consensus 170 t~PFi~C~~-~~~C~y~~n~~SfWLst~~~~~~~~~P~~~~~~~~~i~~~ISRC~VC~ 226 (229)
T 1t60_A 170 SAPFIECHG-RGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCM 226 (229)
T ss_dssp SSCEEEEET-TSCEECCTTCEEEEEBCCCGGGTTSCCCCEEECTTSSGGGBCEEEEEE
T ss_pred cCCeEEeCC-CCcEeECCCCcceeeccCCccccccCcccccccccchhhhcccceeee
Confidence 999999999 799999999999999999999999999999999999999999999997
No 10
>1t60_C Type IV collagen; basement membrane, NC1 domain, structural protein; 1.50A {Bos taurus} PDB: 1m3d_C 1t61_C 1li1_C
Probab=100.00 E-value=1.1e-51 Score=439.05 Aligned_cols=189 Identities=58% Similarity=1.055 Sum_probs=177.9
Q ss_pred CCCCCCCCCCCCCCCCCCCC-------------------------cCcccc--cccccccccceeccCCCcccccCCCCC
Q psy17777 832 KENRDPRDGMDPGVYPDLWD-------------------------PRFCRI--LRPEVLHNAVLILRNDRSYWLSTEEPM 884 (1375)
Q Consensus 832 ~~~g~~g~~~~pg~~~~~~~-------------------------~~~~~~--~~~~~~~~~~~a~rn~~sywlst~~~~ 884 (1375)
.|++..-+|.||...-.+|+ ++|++| ++|+.+++|+||+||||||||||.+++
T Consensus 9 ~HSQt~~iP~CP~g~~~LW~GySll~~~g~~~~~gQdLgs~GSCL~~Fst~Pf~~C~~~~~C~yasrnd~SyWLst~~~~ 88 (227)
T 1t60_C 9 KHSQTDQEPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPGDVCYYASRNDKSYWLSTTAPL 88 (227)
T ss_dssp EECSSSSCCCCCTTCEEEEEEEEEEEEEETTEEEECCTTSGGGEESSCCSCCEEEEETTTEEEESCSSCEEEEEBCSCCC
T ss_pred EecCCCCCCCCCCCchhhhcceeeeeeccCCcccCCcCCCCcchhhhhcCCCceEeCCCCeecccccCCcceeccCCCCC
Confidence 36677777777777666665 456666 888888999999999999999999999
Q ss_pred CCCCccccccccccccccccccCcceEEEeccccccCCCCCCcccccccCCcccccCCCCCCCCCCCCCCCCcccCcccC
Q psy17777 885 PMMPVESTQIQKFISRCVVCEVPANVIAVHSQSVVIPECPVGWNSLWIGYSFVMHTAAGGDGGGQSLASPGSCLEEFRAT 964 (1375)
Q Consensus 885 p~~pv~~~~~~~~isrc~vce~~~~~~a~hsq~~~ip~cp~gw~~l~~~~~~~~~~g~~g~~g~~~~~spGscl~~~~~~ 964 (1375)
+|+||.+.+|++|||||+|||+++.+||||||+..||+||.+|++||.+|||+||++++++.+.|.|.|||||||.||.+
T Consensus 89 p~~p~~~~~i~~~ISRC~VCe~~~~~ia~HSQt~~iP~CP~Gw~~LW~GYSflm~t~~g~~g~gQdL~spGSCL~~Frt~ 168 (227)
T 1t60_C 89 PMMPVAEEDIRPYISRCSVCEAPAVAIAVHSQDVSIPHCPAGWRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRAT 168 (227)
T ss_dssp CSSCEEGGGTGGGBCEEEEEEESSCEEEEECSSSSCCCCCTTCEEEEEEEEEEEEECSTTCEEECCTTSGGGEESSCCSS
T ss_pred ccCCCchhHhhhhccccceecccCCceEEecCCCCCCCCCCCChhhcceeeEEEEcccCCccccccCCCCcccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccceeEeeeCCCccccccccccccccccccccccccccC
Q psy17777 965 PFIECNGEHGSCHYFANKLSFWLATIDPQDQWSRPQQQTLKSGNLRQRISRCQLFL 1020 (1375)
Q Consensus 965 pfie~~G~~G~~~~~g~~~~fwl~~i~~~~~~~~p~~~tlk~g~~~~risrC~g~~ 1020 (1375)
|||||++.+++|+|+.|.+||||+++++..||.+|.+++||+.+++++||||+||+
T Consensus 169 PFi~C~~~~g~C~y~~n~~SfWLst~~~~~~~~~P~~~~~~~~~i~~~ISRC~VC~ 224 (227)
T 1t60_C 169 PFIECNGARGTCHYYANKYSFWLTTIPEQSFQGTPSADTLKAGLIRTHISRCQVCM 224 (227)
T ss_dssp CEEEEETTTTEEECCTTCEEEEEBCCSSSSEESSCCCEEECTTTGGGGBCEEEEEE
T ss_pred CeEEecCCCCeeeecCCCCceeeeccCccccccCCcccccchhhhhhhcccceeee
Confidence 99999998899999999999999999999999999999999999999999999997
No 11
>4ae2_A Procollagen III, collagen alpha-1(III) chain; structural protein, fibrillar collagen, extracellular matrix fibrosis; 1.68A {Homo sapiens} PDB: 4aej_A* 4ak3_A
Probab=99.14 E-value=3.6e-12 Score=142.96 Aligned_cols=135 Identities=11% Similarity=0.195 Sum_probs=92.0
Q ss_pred cccccCcCcccccccccCCCCccccCCCCccccCCCCCccccccCCCCCCCCCCCccccceecccceeeccCcceeEecc
Q psy17777 1188 QAHNQDLGFAGSCVRKFSTMPFLFCDPNNVCNYASRNDRSYWLSTEEPMPMMPVESTQIQKFISRCVVCEVPANVIAVHS 1267 (1375)
Q Consensus 1188 ~a~~qdlG~~gScl~~fstmPf~~C~~~~~C~~a~~~d~sYWld~n~~~p~~p~~~d~i~~~isrC~vCe~pt~~iavhs 1267 (1375)
++..+++.+..+.+ ..+.+|+++|+++.+||+ ++.|+.||||+|..+ ..|+|+|| |++.+.++||+.
T Consensus 29 ~~l~~~i~~~~~P~-Gt~~nPARtC~dl~~~~p-~~~sG~YwIDPngg~-----~~dai~V~------Cnmt~g~tci~~ 95 (256)
T 4ae2_A 29 KSVNGQIESLISPD-GSRKNPARNCRDLKFCHP-ELKSGEYWVDPNQGC-----KLDAIKVF------CNMETGETCISA 95 (256)
T ss_dssp ------------CC-SSSSSCBSCHHHHHHHCT-TCCSEEEEECTTCSS-----GGGCEEEE------EETTTTEEEECB
T ss_pred HHHHHHHHhccCCC-CCCCCccccHHHHHHcCC-CCCCCCEEECCCCCC-----CCCCEEEE------eEeecCCcEEec
Confidence 55566777776666 578899999999999998 789999999999987 78999999 888888888876
Q ss_pred CCcccCCC----------CCCCccce-e-eeEEEEEcCCCCCCCCCCCCCCCchhhhcccCCceeeecCCCceeeccCCc
Q psy17777 1268 QSVVIPEC----------PVGWNSLW-I-GYSFVMHTAAGGDGGGQSLASPGSCLEEFRATPFIECNGEHGSCHYFANKL 1335 (1375)
Q Consensus 1268 ~~~~ip~C----------p~gW~~~w-~-Gysf~~~t~~g~~g~gq~l~spgscl~~~r~~~~iec~~~~g~c~~~~~~~ 1335 (1375)
...+++.- +..|+++- . ++.|.|.... +....-.+||+||.+||-++ +|+.+|+|.++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~wf~~~~~gg~~~~Y~~~~---------~~~~~~~~QL~fL~llS~~c-~Q~ItY~C~~S 165 (256)
T 4ae2_A 96 NPLNVPRKHWWTDSSAEKKHVWFGESMDGGFQFSYGNPE---------LPEDVLDVQLAFLRLLSSRA-SQQITYHCKNS 165 (256)
T ss_dssp SSCEEEEECCCCC----CCCCCHHHHSTTCCCCCBSCTT---------SCHHHHHHHHHHHHHHCSCE-EEEEEEEEESC
T ss_pred cccccceeeeeccCCCCCCceeeeeeecCCeeeeecccc---------cCCCcCHHHHHHHHHhhhce-EEEEEEEeCCC
Confidence 55444321 11232211 1 5666662211 22233468999999999999 99999999999
Q ss_pred ceeeeccCCC
Q psy17777 1336 SFWLATIDPQ 1345 (1375)
Q Consensus 1336 s~w~~~~~~~ 1345 (1375)
..|++....+
T Consensus 166 ~~~~d~~~~~ 175 (256)
T 4ae2_A 166 IAYMDQASGN 175 (256)
T ss_dssp CSSCBTTTTB
T ss_pred cccccCCCCC
Confidence 8888765444
No 12
>1wck_A BCLA protein; collagen-like protein, bacterial surface antigen, jelly- roll topology, structural protein; 1.36A {Bacillus anthracis}
Probab=98.15 E-value=3.1e-07 Score=100.82 Aligned_cols=7 Identities=14% Similarity=-0.273 Sum_probs=2.8
Q ss_pred CCCcccc
Q psy17777 1223 RNDRSYW 1229 (1375)
Q Consensus 1223 ~~d~sYW 1229 (1375)
+|+..+|
T Consensus 155 ~NG~~i~ 161 (220)
T 1wck_A 155 VNGVPVP 161 (220)
T ss_dssp ETTEECT
T ss_pred ECCEecC
Confidence 3444433
No 13
>3gxe_F Collagen alpha-1(I) chain; protein-peptide complex, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3gxe_E*
Probab=89.59 E-value=0.2 Score=35.10 Aligned_cols=15 Identities=40% Similarity=0.740 Sum_probs=5.8
Q ss_pred CCCCCCCCCCCCCCC
Q psy17777 67 GIPGFPGEKGDLGAP 81 (1375)
Q Consensus 67 G~~G~~G~kG~~G~~ 81 (1375)
|.+|++|+||++|++
T Consensus 4 G~pG~pG~KG~rG~~ 18 (23)
T 3gxe_F 4 GTAGLXGMKGHRGFS 18 (26)
T ss_pred CCCCCCCCCCCcCCC
Confidence 333333444333333
No 14
>1pwb_A SP-D, PSP-D, pulmonary surfactant-associated protein D; collectin, C-type lectin, alpha-helical coiled coil, carbohydrate recognition domain; HET: GLC; 1.40A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1 PDB: 1pw9_A* 3ikn_A* 3ikp_A* 3ikq_A* 3ikr_A* 2rie_A* 2ggx_A* 2ggu_A* 2ork_A* 2orj_A* 2ria_A* 2rib_A* 2ric_A* 2rid_A* 2os9_A* 3dbz_A 3g81_A* 3g83_A* 1b08_A 3g84_A* ...
Probab=31.95 E-value=9.7 Score=39.29 Aligned_cols=6 Identities=33% Similarity=0.451 Sum_probs=2.5
Q ss_pred cccccC
Q psy17777 1227 SYWLST 1232 (1375)
Q Consensus 1227 sYWld~ 1232 (1375)
.|||.-
T Consensus 112 ~~WIGl 117 (177)
T 1pwb_A 112 AAFLSM 117 (177)
T ss_dssp CEECSC
T ss_pred cEEEEE
Confidence 344443
No 15
>3f62_A Interleukin 18 binding protein; immunoglobulin, IL-18, beta trefoil, cytokine, secreted; 2.00A {Ectromelia virus}
Probab=22.09 E-value=34 Score=32.73 Aligned_cols=45 Identities=16% Similarity=0.404 Sum_probs=31.7
Q ss_pred cccCCceeeecCCCceeec-cC-Ccceeeecc---CCCCCcCCCccccccCCcC
Q psy17777 1313 FRATPFIECNGEHGSCHYF-AN-KLSFWLATI---DPQDQWSRPQQQTLKSGNL 1361 (1375)
Q Consensus 1313 ~r~~~~iec~~~~g~c~~~-~~-~~s~w~~~~---~~~~~~~~p~~~t~~~~~~ 1361 (1375)
.+..=.++|.+ |.+| .+ +|-|||..= ++++.|-.=...-|+++..
T Consensus 14 ~~s~~~lsCtg----Cs~~~p~FS~lYWL~ng~~~~~~~sFiEhLp~~l~E~~t 63 (109)
T 3f62_A 14 VTSSGEFHCSG----CVEHMPEFSYMYWLAKDMKSDEDTKFIEHLGDGINEDET 63 (109)
T ss_dssp EEETTEEEEEE----EECSSTTSCEEEEEEEETTSCCCCEEGGGSCTTEEECCC
T ss_pred EeecceEEEEe----ccccCCcceEEEEEeCCcccccccchhhhCCCcccccce
Confidence 44556789999 9998 64 899999765 4555676644446666655
Done!