RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17777
(1375 letters)
>d1t61a2 d.169.1.6 (A:115-225) Noncollagenous (NC1) domain of collagen
IV {Cow (Bos taurus) [TaxId: 9913]}
Length = 111
Score = 197 bits (503), Expect = 1e-59
Identities = 73/112 (65%), Positives = 92/112 (82%), Gaps = 1/112 (0%)
Query: 1260 ANVIAVHSQSVVIPECPVGWNSLWIGYSFVMHTAAGGDGGGQSLASPGSCLEEFRATPFI 1319
A V+AVHSQ++ IP+CP GW+SLWIGYSFVMHT+AG +G GQ+LASPGSCLEEFR+ PFI
Sbjct: 1 AMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFI 60
Query: 1320 ECNGEHGSCHYFANKLSFWLATIDPQDQWSRPQQQTLKSGNLRQRISRCQVC 1371
EC+G G+C+Y+AN SFWLATI+ + + +P TLK+G LR +SRCQVC
Sbjct: 61 ECHG-RGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVC 111
Score = 190 bits (485), Expect = 3e-57
Identities = 71/110 (64%), Positives = 90/110 (81%), Gaps = 1/110 (0%)
Query: 908 ANVIAVHSQSVVIPECPVGWNSLWIGYSFVMHTAAGGDGGGQSLASPGSCLEEFRATPFI 967
A V+AVHSQ++ IP+CP GW+SLWIGYSFVMHT+AG +G GQ+LASPGSCLEEFR+ PFI
Sbjct: 1 AMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFI 60
Query: 968 ECNGEHGSCHYFANKLSFWLATIDPQDQWSRPQQQTLKSGNLRQRISRCQ 1017
EC+G G+C+Y+AN SFWLATI+ + + +P TLK+G LR +SRCQ
Sbjct: 61 ECHG-RGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQ 109
Score = 154 bits (390), Expect = 2e-44
Identities = 36/116 (31%), Positives = 60/116 (51%), Gaps = 13/116 (11%)
Query: 1148 ILMVKHSQTAEVPSCTDDKTNTQFTKLWEGYS-LLYVEGNEQAHNQDLGFAGSCVRKFST 1206
++M HSQT ++P C ++ LW GYS +++ + Q L GSC+ +F +
Sbjct: 2 MVMAVHSQTIQIPQCPTG-----WSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRS 56
Query: 1207 MPFLFCDPNNVCNYASRNDRSYWLSTEEPMPMM------PVESTQIQKFISRCVVC 1256
PF+ C CNY + N S+WL+T E M +++ +++ +SRC VC
Sbjct: 57 APFIECHGRGTCNYYA-NAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVC 111
Score = 56.0 bits (135), Expect = 5e-10
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
Query: 871 RNDRSYWLSTEEPMPMM------PVESTQIQKFISRCVVC 904
N S+WL+T E M +++ +++ +SRC VC
Sbjct: 72 ANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVC 111
>d1t61c2 d.169.1.6 (C:115-225) Noncollagenous (NC1) domain of collagen
IV {Cow (Bos taurus) [TaxId: 9913]}
Length = 111
Score = 196 bits (500), Expect = 3e-59
Identities = 79/111 (71%), Positives = 87/111 (78%)
Query: 1263 IAVHSQSVVIPECPVGWNSLWIGYSFVMHTAAGGDGGGQSLASPGSCLEEFRATPFIECN 1322
IAVHSQ V IP CP GW SLWIGYSF+MHTAAG +GGGQSL SPGSCLE+FRATPFIECN
Sbjct: 1 IAVHSQDVSIPHCPAGWRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECN 60
Query: 1323 GEHGSCHYFANKLSFWLATIDPQDQWSRPQQQTLKSGNLRQRISRCQVCIK 1373
G G+CHY+ANK SFWL TI Q P TLK+G +R ISRCQVC+K
Sbjct: 61 GARGTCHYYANKYSFWLTTIPEQSFQGTPSADTLKAGLIRTHISRCQVCMK 111
Score = 186 bits (475), Expect = 5e-56
Identities = 76/107 (71%), Positives = 83/107 (77%)
Query: 911 IAVHSQSVVIPECPVGWNSLWIGYSFVMHTAAGGDGGGQSLASPGSCLEEFRATPFIECN 970
IAVHSQ V IP CP GW SLWIGYSF+MHTAAG +GGGQSL SPGSCLE+FRATPFIECN
Sbjct: 1 IAVHSQDVSIPHCPAGWRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECN 60
Query: 971 GEHGSCHYFANKLSFWLATIDPQDQWSRPQQQTLKSGNLRQRISRCQ 1017
G G+CHY+ANK SFWL TI Q P TLK+G +R ISRCQ
Sbjct: 61 GARGTCHYYANKYSFWLTTIPEQSFQGTPSADTLKAGLIRTHISRCQ 107
Score = 145 bits (367), Expect = 3e-41
Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 14/115 (12%)
Query: 1150 MVKHSQTAEVPSCTDDKTNTQFTKLWEGYS-LLYVEGNEQAHNQDLGFAGSCVRKFSTMP 1208
+ HSQ +P C + LW GYS L++ ++ Q L GSC+ F P
Sbjct: 1 IAVHSQDVSIPHCPAG-----WRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATP 55
Query: 1209 FLFCD-PNNVCNYASRNDRSYWLSTEEPMPMMP------VESTQIQKFISRCVVC 1256
F+ C+ C+Y N S+WL+T +++ I+ ISRC VC
Sbjct: 56 FIECNGARGTCHYY-ANKYSFWLTTIPEQSFQGTPSADTLKAGLIRTHISRCQVC 109
Score = 56.4 bits (136), Expect = 3e-10
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
Query: 871 RNDRSYWLSTEEPMPMMP------VESTQIQKFISRCVVC 904
N S+WL+T +++ I+ ISRC VC
Sbjct: 70 ANKYSFWLTTIPEQSFQGTPSADTLKAGLIRTHISRCQVC 109
>d1t61c1 d.169.1.6 (C:6-114) Noncollagenous (NC1) domain of collagen
IV {Cow (Bos taurus) [TaxId: 9913]}
Length = 109
Score = 173 bits (441), Expect = 3e-51
Identities = 71/112 (63%), Positives = 83/112 (74%), Gaps = 5/112 (4%)
Query: 1149 LMVKHSQTAEVPSCTDDKTNTQFTKLWEGYSLLYVEGNEQAHNQDLGFAGSCVRKFSTMP 1208
L+VKHSQT + P C KLW GYSLLY EG E+AHNQDLG AGSC+ +FSTMP
Sbjct: 1 LLVKHSQTDQEPMCPVG-----MNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMP 55
Query: 1209 FLFCDPNNVCNYASRNDRSYWLSTEEPMPMMPVESTQIQKFISRCVVCEVPA 1260
FL+C+P +VC YASRND+SYWLST P+PMMPV I+ +ISRC VCE PA
Sbjct: 56 FLYCNPGDVCYYASRNDKSYWLSTTAPLPMMPVAEEDIRPYISRCSVCEAPA 107
Score = 161 bits (408), Expect = 6e-47
Identities = 38/110 (34%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 1262 VIAVHSQSVVIPECPVGWNSLWIGYSFVMHTAAGGDGGGQSLASPGSCLEEFRATPFIEC 1321
++ HSQ+ P CPVG N LW GYS + Q L GSCL F PF+ C
Sbjct: 1 LLVKHSQTDQEPMCPVGMNKLWSGYSLLYFEG-QEKAHNQDLGLAGSCLARFSTMPFLYC 59
Query: 1322 NGEHGSCHYFANKLSFWLATIDPQDQWSRPQQQTLKSGNLRQRISRCQVC 1371
N + N S+WL+T P + ++R ISRC VC
Sbjct: 60 NPGDVCYYASRNDKSYWLSTTAPLP------MMPVAEEDIRPYISRCSVC 103
Score = 154 bits (391), Expect = 1e-44
Identities = 36/108 (33%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 910 VIAVHSQSVVIPECPVGWNSLWIGYSFVMHTAAGGDGGGQSLASPGSCLEEFRATPFIEC 969
++ HSQ+ P CPVG N LW GYS + Q L GSCL F PF+ C
Sbjct: 1 LLVKHSQTDQEPMCPVGMNKLWSGYSLLYFEG-QEKAHNQDLGLAGSCLARFSTMPFLYC 59
Query: 970 NGEHGSCHYFANKLSFWLATIDPQDQWSRPQQQTLKSGNLRQRISRCQ 1017
N + N S+WL+T P + ++R ISRC
Sbjct: 60 NPGDVCYYASRNDKSYWLSTTAPLP------MMPVAEEDIRPYISRCS 101
Score = 70.2 bits (172), Expect = 5e-15
Identities = 25/38 (65%), Positives = 29/38 (76%)
Query: 871 RNDRSYWLSTEEPMPMMPVESTQIQKFISRCVVCEVPA 908
RND+SYWLST P+PMMPV I+ +ISRC VCE PA
Sbjct: 70 RNDKSYWLSTTAPLPMMPVAEEDIRPYISRCSVCEAPA 107
>d1t61a1 d.169.1.6 (A:6-114) Noncollagenous (NC1) domain of collagen
IV {Cow (Bos taurus) [TaxId: 9913]}
Length = 109
Score = 164 bits (417), Expect = 4e-48
Identities = 71/113 (62%), Positives = 82/113 (72%), Gaps = 7/113 (6%)
Query: 1149 LMVKHSQTAEVPSCTDDKTNTQFTKLWEGYSLLYVEGNEQAHNQDLGFAGSCVRKFSTMP 1208
L+ +HSQT + P C L+ GYSLLYV+GNE+AH QDLG AGSC+RKFSTMP
Sbjct: 2 LVTRHSQTTDDPQCPPG-----TKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMP 56
Query: 1209 FLFCDPNNVCNYASRNDRSYWLSTEEPMPM--MPVESTQIQKFISRCVVCEVP 1259
FLFC+ NNVCN+ASRND SYWLST EPMPM P+ I+ FISRC VCE P
Sbjct: 57 FLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAP 109
Score = 161 bits (408), Expect = 6e-47
Identities = 38/110 (34%), Positives = 53/110 (48%), Gaps = 5/110 (4%)
Query: 1262 VIAVHSQSVVIPECPVGWNSLWIGYSFVMHTAAGGDGGGQSLASPGSCLEEFRATPFIEC 1321
++ HSQ+ P+CP G L+ GYS + GQ L + GSCL +F PF+ C
Sbjct: 2 LVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNER-AHGQDLGTAGSCLRKFSTMPFLFC 60
Query: 1322 NGEHGSCHYFANKLSFWLATIDPQDQWSRPQQQTLKSGNLRQRISRCQVC 1371
N + N S+WL+T +P P + N+R ISRC VC
Sbjct: 61 NINNVCNFASRNDYSYWLSTPEPMPMSMAP----ITGENIRPFISRCAVC 106
Score = 154 bits (391), Expect = 1e-44
Identities = 36/108 (33%), Positives = 51/108 (47%), Gaps = 5/108 (4%)
Query: 910 VIAVHSQSVVIPECPVGWNSLWIGYSFVMHTAAGGDGGGQSLASPGSCLEEFRATPFIEC 969
++ HSQ+ P+CP G L+ GYS + GQ L + GSCL +F PF+ C
Sbjct: 2 LVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNER-AHGQDLGTAGSCLRKFSTMPFLFC 60
Query: 970 NGEHGSCHYFANKLSFWLATIDPQDQWSRPQQQTLKSGNLRQRISRCQ 1017
N + N S+WL+T +P P + N+R ISRC
Sbjct: 61 NINNVCNFASRNDYSYWLSTPEPMPMSMAP----ITGENIRPFISRCA 104
Score = 62.9 bits (153), Expect = 2e-12
Identities = 25/39 (64%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 871 RNDRSYWLSTEEPMPM--MPVESTQIQKFISRCVVCEVP 907
RND SYWLST EPMPM P+ I+ FISRC VCE P
Sbjct: 71 RNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAP 109
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.145 0.469
Gapped
Lambda K H
0.267 0.0574 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 5,677,698
Number of extensions: 302247
Number of successful extensions: 393
Number of sequences better than 10.0: 1
Number of HSP's gapped: 369
Number of HSP's successfully gapped: 21
Length of query: 1375
Length of database: 2,407,596
Length adjustment: 97
Effective length of query: 1278
Effective length of database: 1,075,786
Effective search space: 1374854508
Effective search space used: 1374854508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 59 (26.8 bits)