BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17779
         (141 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
           To Dna
 pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
           To Dna
 pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
           To Dna
          Length = 87

 Score = 93.2 bits (230), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 56/83 (67%), Gaps = 2/83 (2%)

Query: 37  KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
           K + CP C  +FS +  L+ H R HTGE+PYKC    CGKSF+++ +L +H+R H+G +P
Sbjct: 3   KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCP--ECGKSFSQSSDLQKHQRTHTGEKP 60

Query: 97  YPCTHCGKKFGRKDHLKKHLRTH 119
           Y C  CGK F R DHL +H RTH
Sbjct: 61  YKCPECGKSFSRSDHLSRHQRTH 83



 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 38/56 (67%), Gaps = 2/56 (3%)

Query: 64  ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
           E+PYKC    CGKSF+++  L +H+R H+G +PY C  CGK F +   L+KH RTH
Sbjct: 2   EKPYKCP--ECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTH 55



 Score = 25.4 bits (54), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGER 65
          K + CP C  +FS +  L  H R H  ++
Sbjct: 59 KPYKCPECGKSFSRSDHLSRHQRTHQNKK 87


>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
           Triplets
 pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
           Triplets
          Length = 190

 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 52/83 (62%), Gaps = 2/83 (2%)

Query: 37  KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
           K + CP C  +FS    L+ H R HTGE+PYKC    CGKSF+R + L  H+R H+G +P
Sbjct: 104 KPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCP--ECGKSFSREDNLHTHQRTHTGEKP 161

Query: 97  YPCTHCGKKFGRKDHLKKHLRTH 119
           Y C  CGK F R+D L  H RTH
Sbjct: 162 YKCPECGKSFSRRDALNVHQRTH 184



 Score = 87.8 bits (216), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 42/90 (46%), Positives = 57/90 (63%), Gaps = 2/90 (2%)

Query: 37  KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
           K + CP C  +FS +  L  H R HTGE+PYKC    CGKSF+  ++LTRH+R H+G +P
Sbjct: 20  KPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCP--ECGKSFSDKKDLTRHQRTHTGEKP 77

Query: 97  YPCTHCGKKFGRKDHLKKHLRTHFPQPRYV 126
           Y C  CGK F ++ +L+ H RTH  +  Y 
Sbjct: 78  YKCPECGKSFSQRANLRAHQRTHTGEKPYA 107



 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/83 (48%), Positives = 51/83 (61%), Gaps = 2/83 (2%)

Query: 37  KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
           K + CP C  +FS    L+ H R HTGE+PY C    CGKSF++   L  H+R H+G +P
Sbjct: 76  KPYKCPECGKSFSQRANLRAHQRTHTGEKPYACP--ECGKSFSQLAHLRAHQRTHTGEKP 133

Query: 97  YPCTHCGKKFGRKDHLKKHLRTH 119
           Y C  CGK F R+D+L  H RTH
Sbjct: 134 YKCPECGKSFSREDNLHTHQRTH 156



 Score = 59.7 bits (143), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 6/77 (7%)

Query: 19  LEYFKSHEQSMKAKNQRPKKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSF 78
           L + ++H+++   +    K + CP C  +FS    L  H R HTGE+PYKC    CGKSF
Sbjct: 118 LAHLRAHQRTHTGE----KPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCP--ECGKSF 171

Query: 79  TRNEELTRHKRIHSGLR 95
           +R + L  H+R H+G +
Sbjct: 172 SRRDALNVHQRTHTGKK 188


>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
           To Its Target Dna
          Length = 90

 Score = 87.0 bits (214), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 37/77 (48%), Positives = 50/77 (64%)

Query: 44  CNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTHCG 103
           C   ++ +  LK H+R HTGE+PY CD + CG  F R++ELTRH R H+G RP+ C  C 
Sbjct: 14  CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73

Query: 104 KKFGRKDHLKKHLRTHF 120
           + F R DHL  H++ HF
Sbjct: 74  RAFSRSDHLALHMKRHF 90



 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 2/56 (3%)

Query: 66  PYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTH--CGKKFGRKDHLKKHLRTH 119
            + CD   CGK++T++  L  H R H+G +PY C    CG KF R D L +H R H
Sbjct: 6   THTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH 61



 Score = 39.3 bits (90), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 34 QRPKKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIH 91
          ++P   +   C   F+ + +L  H R HTG RP++C  + C ++F+R++ L  H + H
Sbjct: 34 EKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQC--QKCDRAFSRSDHLALHMKRH 89



 Score = 26.9 bits (58), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 102 CGKKFGRKDHLKKHLRTHFPQPRY 125
           CGK + +  HLK HLRTH  +  Y
Sbjct: 14  CGKTYTKSSHLKAHLRTHTGEKPY 37


>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
           To Its Target Dna
          Length = 89

 Score = 87.0 bits (214), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 37/77 (48%), Positives = 50/77 (64%)

Query: 44  CNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTHCG 103
           C   ++ +  LK H+R HTGE+PY CD + CG  F R++ELTRH R H+G RP+ C  C 
Sbjct: 13  CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72

Query: 104 KKFGRKDHLKKHLRTHF 120
           + F R DHL  H++ HF
Sbjct: 73  RAFSRSDHLALHMKRHF 89



 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 2/56 (3%)

Query: 66  PYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTH--CGKKFGRKDHLKKHLRTH 119
            + CD   CGK++T++  L  H R H+G +PY C    CG KF R D L +H R H
Sbjct: 5   THTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH 60



 Score = 39.3 bits (90), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 34 QRPKKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIH 91
          ++P   +   C   F+ + +L  H R HTG RP++C  + C ++F+R++ L  H + H
Sbjct: 33 EKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQC--QKCDRAFSRSDHLALHMKRH 88



 Score = 26.9 bits (58), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 102 CGKKFGRKDHLKKHLRTHFPQPRY 125
           CGK + +  HLK HLRTH  +  Y
Sbjct: 13  CGKTYTKSSHLKAHLRTHTGEKPY 36


>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
           Finger Domain Bound To Dna
 pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
           Finger Domain Bound To Dna
 pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
           Finger Domain Bound To Dna
          Length = 119

 Score = 86.3 bits (212), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 58/89 (65%)

Query: 31  AKNQRPKKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRI 90
           A  +RP     P CN  +     L+ H R HTGE+PY+CD ++C + F+R+++L RH+R 
Sbjct: 1   ASEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR 60

Query: 91  HSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
           H+G++P+ C  C +KF R DHLK H RTH
Sbjct: 61  HTGVKPFQCKTCQRKFSRSDHLKTHTRTH 89



 Score = 63.5 bits (153), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 58/104 (55%), Gaps = 7/104 (6%)

Query: 21  YFK-SHEQ--SMKAKNQRPKKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKS 77
           YFK SH Q  S K   ++P + +   C   FS + QLK H R HTG +P++C  + C + 
Sbjct: 18  YFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQC--KTCQRK 75

Query: 78  FTRNEELTRHKRIHSGLRPYPCT--HCGKKFGRKDHLKKHLRTH 119
           F+R++ L  H R H+G +P+ C    C KKF R D L +H   H
Sbjct: 76  FSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119


>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
           Domains From Human Kruppel-Like Factor 5
          Length = 100

 Score = 83.2 bits (204), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 36/78 (46%), Positives = 49/78 (62%)

Query: 42  PHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTH 101
           P C   ++ +  LK H+R HTGE+PYKC  E C   F R++ELTRH R H+G +P+ C  
Sbjct: 21  PGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGV 80

Query: 102 CGKKFGRKDHLKKHLRTH 119
           C + F R DHL  H++ H
Sbjct: 81  CNRSFSRSDHLALHMKRH 98



 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 65  RPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTH--CGKKFGRKDHLKKHLRTH 119
           R + CD   C K +T++  L  H R H+G +PY CT   C  +F R D L +H R H
Sbjct: 14  RIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKH 70



 Score = 40.0 bits (92), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 34 QRPKKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIH 91
          ++P K     C+  F+ + +L  H R HTG +P++C    C +SF+R++ L  H + H
Sbjct: 43 EKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGV--CNRSFSRSDHLALHMKRH 98


>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
          Length = 90

 Score = 79.0 bits (193), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 39/91 (42%), Positives = 58/91 (63%), Gaps = 6/91 (6%)

Query: 34  QRPKKFNCP--HCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIH 91
           +RP  + CP   C+  FS +G L  HIRIHTG++P++C    C ++F+R++ LT H R H
Sbjct: 2   ERP--YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTH 57

Query: 92  SGLRPYPCTHCGKKFGRKDHLKKHLRTHFPQ 122
           +G +P+ C  CG+KF R D  K+H + H  Q
Sbjct: 58  TGEKPFACDICGRKFARSDERKRHTKIHLRQ 88


>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
 pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
          Length = 90

 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 58/91 (63%), Gaps = 6/91 (6%)

Query: 34  QRPKKFNCP--HCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIH 91
           +RP  + CP   C+  FS + +L  HIRIHTG++P++C    C ++F+R++ LT H R H
Sbjct: 2   ERP--YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTH 57

Query: 92  SGLRPYPCTHCGKKFGRKDHLKKHLRTHFPQ 122
           +G +P+ C  CG+KF R D  K+H + H  Q
Sbjct: 58  TGEKPFACDICGRKFARSDERKRHTKIHLRQ 88


>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
 pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
          Length = 90

 Score = 77.4 bits (189), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 58/91 (63%), Gaps = 6/91 (6%)

Query: 34  QRPKKFNCP--HCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIH 91
           +RP  + CP   C+  FS++  L  HIRIHTG++P++C    C ++F+R++ LT H R H
Sbjct: 2   ERP--YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTH 57

Query: 92  SGLRPYPCTHCGKKFGRKDHLKKHLRTHFPQ 122
           +G +P+ C  CG+KF R D  K+H + H  Q
Sbjct: 58  TGEKPFACDICGRKFARSDERKRHTKIHLRQ 88


>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
 pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
          Length = 90

 Score = 77.0 bits (188), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 58/91 (63%), Gaps = 6/91 (6%)

Query: 34  QRPKKFNCP--HCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIH 91
           +RP  + CP   C+  FS + +L  HIRIHTG++P++C    C ++F+R++ LT H R H
Sbjct: 2   ERP--YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTH 57

Query: 92  SGLRPYPCTHCGKKFGRKDHLKKHLRTHFPQ 122
           +G +P+ C  CG+KF R D  K+H + H  Q
Sbjct: 58  TGEKPFACDICGRKFARSDERKRHTKIHLRQ 88


>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
 pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
 pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
          Length = 90

 Score = 77.0 bits (188), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 57/91 (62%), Gaps = 6/91 (6%)

Query: 34  QRPKKFNCP--HCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIH 91
           +RP  + CP   C+  FS +  L  HIRIHTG++P++C    C ++F+R++ LT H R H
Sbjct: 2   ERP--YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTH 57

Query: 92  SGLRPYPCTHCGKKFGRKDHLKKHLRTHFPQ 122
           +G +P+ C  CG+KF R D  K+H + H  Q
Sbjct: 58  TGEKPFACDICGRKFARSDERKRHTKIHLRQ 88


>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
           Dna
 pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
           Dna
          Length = 87

 Score = 77.0 bits (188), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 58/91 (63%), Gaps = 6/91 (6%)

Query: 34  QRPKKFNCP--HCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIH 91
           +RP  + CP   C+  FS + +L  HIRIHTG++P++C    C ++F+R++ LT H R H
Sbjct: 1   ERP--YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTH 56

Query: 92  SGLRPYPCTHCGKKFGRKDHLKKHLRTHFPQ 122
           +G +P+ C  CG+KF R D  K+H + H  Q
Sbjct: 57  TGEKPFACDICGRKFARSDERKRHTKIHLRQ 87


>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
           Zif268- Dna Complex At 2.1 Angstroms
          Length = 87

 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 58/90 (64%), Gaps = 6/90 (6%)

Query: 33  NQRPKKFNCP--HCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRI 90
           ++RP  + CP   C+  FS + +L  HIRIHTG++P++C    C ++F+R++ LT H R 
Sbjct: 1   HERP--YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRT 56

Query: 91  HSGLRPYPCTHCGKKFGRKDHLKKHLRTHF 120
           H+G +P+ C  CG+KF R D  K+H + H 
Sbjct: 57  HTGEKPFACDICGRKFARSDERKRHTKIHL 86



 Score = 28.9 bits (63), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)

Query: 95  RPYPC--THCGKKFGRKDHLKKHLRTHFPQ 122
           RPY C    C ++F R D L +H+R H  Q
Sbjct: 3   RPYACPVESCDRRFSRSDELTRHIRIHTGQ 32


>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
           To The Adeno-Associated Virus P5 Initiator Element
          Length = 124

 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/86 (44%), Positives = 51/86 (59%), Gaps = 2/86 (2%)

Query: 36  PKKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLR 95
           P+   C  C  AF  + +LK H  +HTGE+P++C  E CGK F+ +  L  H RIH+G R
Sbjct: 32  PRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDR 91

Query: 96  PYPC--THCGKKFGRKDHLKKHLRTH 119
           PY C    C KKF +  +LK H+ TH
Sbjct: 92  PYVCPFDGCNKKFAQSTNLKSHILTH 117



 Score = 60.1 bits (144), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 52/95 (54%), Gaps = 7/95 (7%)

Query: 36  PKKFNCPH--CNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSG 93
           P+   CPH  C   F +N  ++ H+  H G R + C    CGK+F  + +L RH+ +H+G
Sbjct: 3   PRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVC--AECGKAFVESSKLKRHQLVHTG 59

Query: 94  LRPYPCTH--CGKKFGRKDHLKKHLRTHFPQPRYV 126
            +P+ CT   CGK+F    +L+ H+R H     YV
Sbjct: 60  EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYV 94



 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 28/49 (57%)

Query: 44  CNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHS 92
           C   FS +  L+ H+RIHTG+RPY C  + C K F ++  L  H   H+
Sbjct: 70  CGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHA 118


>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
           Dna
 pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
           Dna
 pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
           Dna
 pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
           Dna
 pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
           Dna
 pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
           Dna
          Length = 73

 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 39/55 (70%)

Query: 65  RPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
           RPY C  E+C + F+R++ELTRH RIH+G +P+ C  C + F R DHL  H+RTH
Sbjct: 18  RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72



 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 4/58 (6%)

Query: 37 KKFNCP--HCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHS 92
          + + CP   C+  FS + +L  HIRIHTG++P++C    C ++F+R++ LT H R H+
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHT 73



 Score = 30.4 bits (67), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 94  LRPYPC--THCGKKFGRKDHLKKHLRTHFPQ 122
           +RPY C    C ++F R D L +H+R H  Q
Sbjct: 17  MRPYACPVESCDRRFSRSDELTRHIRIHTGQ 47


>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
           Human Zinc Finger Protein Zic 3
          Length = 155

 Score = 67.0 bits (162), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 2/82 (2%)

Query: 40  NCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPC 99
            CP    +F    +L  HIR+HTGE+P+ C    CGK F R+E L  HKR H+G +P+ C
Sbjct: 64  ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123

Query: 100 TH--CGKKFGRKDHLKKHLRTH 119
               C ++F      KKH+  H
Sbjct: 124 EFEGCDRRFANSSDRKKHMHVH 145



 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 37  KKFNCPH--CNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGL 94
           K F CP   C   F+ +  LK H R HTGE+P+KC+ E C + F  + +  +H  +H+  
Sbjct: 89  KPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSD 148

Query: 95  RPYPCT 100
           +  P +
Sbjct: 149 KSGPSS 154


>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
           (Tatazf;clone #6)
 pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
           (Tatazf;clone #6)
          Length = 90

 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 51/90 (56%), Gaps = 10/90 (11%)

Query: 34  QRPKKFNCP--HCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIH 91
           +RP  + CP   C+  FS    L  HIRIHTG++P++C    C ++F++   L  H R H
Sbjct: 2   ERP--YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRI--CMRNFSQQASLNAHIRTH 57

Query: 92  SGLRPYPCTHCGKKFG----RKDHLKKHLR 117
           +G +P+ C  CG+KF     R  H K HLR
Sbjct: 58  TGEKPFACDICGRKFATLHTRTRHTKIHLR 87



 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 34/56 (60%)

Query: 64  ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
           ERPY C  E+C + F++   L  H RIH+G +P+ C  C + F ++  L  H+RTH
Sbjct: 2   ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTH 57


>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
           #2)
 pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
           #2)
          Length = 90

 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 53/90 (58%), Gaps = 10/90 (11%)

Query: 34  QRPKKFNCP--HCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIH 91
           +RP  + CP   C+  FS    L  HIRIHTG++P++C    C ++F+++  L +H R H
Sbjct: 2   ERP--YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRI--CMRNFSQHTGLNQHIRTH 57

Query: 92  SGLRPYPCTHCGKKFG----RKDHLKKHLR 117
           +G +P+ C  CG+KF     R  H K HLR
Sbjct: 58  TGEKPFACDICGRKFATLHTRDRHTKIHLR 87



 Score = 53.5 bits (127), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 34/56 (60%)

Query: 64  ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
           ERPY C  E+C + F++   L  H RIH+G +P+ C  C + F +   L +H+RTH
Sbjct: 2   ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTH 57


>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
          Length = 82

 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 2/81 (2%)

Query: 39  FNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYP 98
           F+C  C  +F  +  L  H+ IH+  RPY C  + CGK F +  ++ +H  IH+G +P+ 
Sbjct: 2   FDCKICGKSFKRSSTLSTHLLIHSDTRPYPC--QYCGKRFHQKSDMKKHTFIHTGEKPHK 59

Query: 99  CTHCGKKFGRKDHLKKHLRTH 119
           C  CGK F +  +L  H R H
Sbjct: 60  CQVCGKAFSQSSNLITHSRKH 80



 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 4/61 (6%)

Query: 33 NQRPKKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHS 92
          + RP  + C +C   F     +K H  IHTGE+P+KC    CGK+F+++  L  H R H+
Sbjct: 26 DTRP--YPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQV--CGKAFSQSSNLITHSRKHT 81

Query: 93 G 93
          G
Sbjct: 82 G 82


>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
          Length = 155

 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 39/94 (41%), Positives = 47/94 (50%), Gaps = 3/94 (3%)

Query: 48  FSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTH--CGKK 105
           F     L  H+R HTGE+P+KC  E C KS++R E L  H R H+G +PY C H  C K 
Sbjct: 49  FKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKA 108

Query: 106 FGRKDHLKKHL-RTHFPQPRYVSCYPYMYGGYTS 138
           F       KH  RTH  +  YV   P     YT 
Sbjct: 109 FSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTD 142



 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 34  QRPKKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHK-RIHS 92
           ++P K     C  ++S    LK H+R HTGE+PY C+ E C K+F+   +  +H+ R HS
Sbjct: 65  EKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHS 124

Query: 93  GLRPYPCT--HCGKKFGRKDHLKKHLRT 118
             +PY C    C K++     L+KH++T
Sbjct: 125 NEKPYVCKLPGCTKRYTDPSSLRKHVKT 152



 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 8/91 (8%)

Query: 44  CNVAFSNNGQLKGHIR---IHTGERPYKCDAENCGKS---FTRNEELTRHKRIHSGLRPY 97
           C+  F +  QL  HI    IH   + + C    C +    F     L  H R H+G +P+
Sbjct: 9   CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPH 68

Query: 98  PCTH--CGKKFGRKDHLKKHLRTHFPQPRYV 126
            CT   C K + R ++LK HLR+H  +  Y+
Sbjct: 69  KCTFEGCRKSYSRLENLKTHLRSHTGEKPYM 99



 Score = 33.9 bits (76), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 8/77 (10%)

Query: 19  LEYFKSHEQSMKAKNQRPKKFNCPH--CNVAFSNNGQLKGHI-RIHTGERPYKCDAENCG 75
           LE  K+H +S   +    K + C H  C+ AFSN      H  R H+ E+PY C    C 
Sbjct: 82  LENLKTHLRSHTGE----KPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCT 137

Query: 76  KSFTRNEELTRH-KRIH 91
           K +T    L +H K +H
Sbjct: 138 KRYTDPSSLRKHVKTVH 154


>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
           Protein Odd-Skipped-Related 2 Splicing Isoform 2
          Length = 106

 Score = 59.7 bits (143), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 43/84 (51%), Gaps = 2/84 (2%)

Query: 37  KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
           K+F C  C   F+ +  L  H R HT ERPY CD   C K+F R + L  H+ IHS  +P
Sbjct: 16  KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDI--CHKAFRRQDHLRDHRYIHSKEKP 73

Query: 97  YPCTHCGKKFGRKDHLKKHLRTHF 120
           + C  CGK F +   L  H   H 
Sbjct: 74  FKCQECGKGFCQSRTLAVHKTLHM 97


>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
          Length = 92

 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 2/75 (2%)

Query: 44  CNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTH-- 101
           C  A++ N +L+ H+  HTGE+P+ C  E C K FT    LTRH   H+G + + C    
Sbjct: 11  CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70

Query: 102 CGKKFGRKDHLKKHL 116
           C  +F  K ++KKH 
Sbjct: 71  CDLRFTTKANMKKHF 85


>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
           Of Human Zinc Finger Protein 297b
          Length = 110

 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 2/75 (2%)

Query: 44  CNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTHCG 103
           C  +F++  Q   H+ +H G RPY C    CGK F     L  H +IH+G++PY C  C 
Sbjct: 15  CGKSFTHKSQRDRHMSMHLGLRPYGCGV--CGKKFKMKHHLVGHMKIHTGIKPYECNICA 72

Query: 104 KKFGRKDHLKKHLRT 118
           K+F  +D   +H+ +
Sbjct: 73  KRFMWRDSFHRHVTS 87



 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 35/58 (60%), Gaps = 3/58 (5%)

Query: 62  TGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
           +G++ Y C    CGKSFT   +  RH  +H GLRPY C  CGKKF  K HL  H++ H
Sbjct: 6   SGDKLYPC---QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 60


>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
           Bound To The 5s Ribosomal Rna Gene Internal Control
           Region
 pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
           Bound To The 5s Ribosomal Rna Gene Internal Control
           Region
          Length = 190

 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 2/75 (2%)

Query: 44  CNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTH-- 101
           C  A++ N +L+ H+  HTGE+P+ C  E C K FT    LTRH   H+G + + C    
Sbjct: 20  CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79

Query: 102 CGKKFGRKDHLKKHL 116
           C  +F  K ++KKH 
Sbjct: 80  CDLRFTTKANMKKHF 94



 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 6/93 (6%)

Query: 37  KKFNCPH--CNVAFSNNGQLKGHI-RIHTGER-PYKCDAENCGKSFTRNEELTRHKRIHS 92
           K F C    C++ F+    +K H  R H  +   Y C  ENCGK+F ++ +L  H+  H+
Sbjct: 71  KNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHT 130

Query: 93  GLRPYPCTH--CGKKFGRKDHLKKHLRTHFPQP 123
              PY C H  C K+F     LK+H + H   P
Sbjct: 131 QQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYP 163



 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 44  CNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPC 99
           C  AF  + QLK H   HT + PY+C  E C K F+    L RH+++H+G   YPC
Sbjct: 112 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPC 164


>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
           Of Zinc Finger Protein 435
          Length = 77

 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 37/55 (67%), Gaps = 2/55 (3%)

Query: 65  RPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
           R YKCD   CGKSF+ + +L++H+R H+G +PY C  CGK F ++ HL  H R H
Sbjct: 17  RRYKCD--ECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69



 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 2/60 (3%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          +++ C  C  +FS++  L  H R HTGE+PYKCD   CGK+F +   L  H R+H+G  P
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCD--ECGKAFIQRSHLIGHHRVHTGSGP 74



 Score = 28.9 bits (63), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 15/31 (48%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTHFPQPRY 125
           R Y C  CGK F     L KH RTH  +  Y
Sbjct: 17  RRYKCDECGKSFSHSSDLSKHRRTHTGEKPY 47


>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
           Human Zinc Finger Protein 24
          Length = 72

 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 64  ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTHFPQP 123
           E+PY C    CGK+F+R+  L +H+R+H+G +PY C  CGK F +   L  H R H   P
Sbjct: 12  EKPYGCV--ECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGP 69



 Score = 56.2 bits (134), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 2/56 (3%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHS 92
          K + C  C  AFS +  L  H R+HTGE+PYKC    CGK+F++N  L  H+RIH+
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCL--ECGKAFSQNSGLINHQRIHT 66



 Score = 30.8 bits (68), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 16/31 (51%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTHFPQPRY 125
           +PY C  CGK F R   L +H R H  +  Y
Sbjct: 13  KPYGCVECGKAFSRSSILVQHQRVHTGEKPY 43


>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
           Zinc-Binding Domain Of The Zinc Finger Protein 64,
           Isoforms 1 And 2
          Length = 96

 Score = 56.2 bits (134), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 40/79 (50%), Gaps = 2/79 (2%)

Query: 41  CPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCT 100
           C  C   FS   +LK H+R HTG +PYKC  + C  +   +  L +H RIHS  RP+ C 
Sbjct: 11  CEVCGKCFSRKDKLKTHMRCHTGVKPYKC--KTCDYAAADSSSLNKHLRIHSDERPFKCQ 68

Query: 101 HCGKKFGRKDHLKKHLRTH 119
            C         L  HLR+H
Sbjct: 69  ICPYASRNSSQLTVHLRSH 87



 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 66  PYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTHFPQ 122
           P+KC  E CGK F+R ++L  H R H+G++PY C  C         L KHLR H  +
Sbjct: 8   PHKC--EVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE 62



 Score = 42.7 bits (99), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSG 93
          K + C  C+ A +++  L  H+RIH+ ERP+KC  + C  +   + +LT H R H+G
Sbjct: 35 KPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC--QICPYASRNSSQLTVHLRSHTG 89



 Score = 28.1 bits (61), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)

Query: 33 NQRPKKFNCPHCNVAFSNNGQLKGHIRIHTGE 64
          ++RP  F C  C  A  N+ QL  H+R HTG+
Sbjct: 61 DERP--FKCQICPYASRNSSQLTVHLRSHTGD 90


>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
           Zinc Finger Protein 278
          Length = 95

 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 41/85 (48%), Gaps = 4/85 (4%)

Query: 41  CPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGL--RPYP 98
           C  C   F +   L  H   H+GE+PY C    CG  F R + ++ H R H G   +PY 
Sbjct: 10  CEICGKIFRDVYHLNRHKLSHSGEKPYSCPV--CGLRFKRKDRMSYHVRSHDGSVGKPYI 67

Query: 99  CTHCGKKFGRKDHLKKHLRTHFPQP 123
           C  CGK F R DHL  H++     P
Sbjct: 68  CQSCGKGFSRPDHLNGHIKQVHSGP 92



 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 5/72 (6%)

Query: 25 HEQSMKAKNQRPKKFNCPHCNVAFSNNGQLKGHIRIHTGE--RPYKCDAENCGKSFTRNE 82
          H    K  +   K ++CP C + F    ++  H+R H G   +PY C  ++CGK F+R +
Sbjct: 22 HLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC--QSCGKGFSRPD 79

Query: 83 ELTRH-KRIHSG 93
           L  H K++HSG
Sbjct: 80 HLNGHIKQVHSG 91


>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
          Northeast Structural Genomics Consortium
          Length = 74

 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          K + C  C  +F   G L  H  +HTGE+PY+C+   CG  F R   L  H RIHSG +P
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNI--CGAQFNRPANLKTHTRIHSGEKP 73



 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 2/56 (3%)

Query: 64  ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
           ++PYKCD   C  SF     L  HK +H+G +PY C  CG +F R  +LK H R H
Sbjct: 15  DKPYKCD--RCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68



 Score = 31.6 bits (70), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 23/45 (51%)

Query: 22 FKSHEQSMKAKNQRPKKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          +K +  S K  +   K + C  C   F+    LK H RIH+GE+P
Sbjct: 29 YKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73


>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2
          Domains From Human Krueppel-Like Factor 10
          Length = 72

 Score = 52.8 bits (125), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 31/50 (62%)

Query: 42 PHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIH 91
          P C   +  +  LK H R HTGE+P+ C  + C + F R++EL+RH+R H
Sbjct: 23 PGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72



 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 2/57 (3%)

Query: 65  RPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTH--CGKKFGRKDHLKKHLRTH 119
           R + C    CGK++ ++  L  H R H+G +P+ C+   C ++F R D L +H RTH
Sbjct: 16  RSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72


>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
 pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
          Length = 88

 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGL 94
          K F C  C   FS +  L  HIR HTGE+P+ CD   CG+ F R++E  RH+ I   L
Sbjct: 2  KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRHRDIQHIL 57



 Score = 49.7 bits (117), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 34/51 (66%), Gaps = 2/51 (3%)

Query: 65  RPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTHCGKKFGRKDHLKKH 115
           +P++C    C ++F+R++ LT H R H+G +P+ C  CG+KF R D  K+H
Sbjct: 2   KPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50



 Score = 33.5 bits (75), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 94  LRPYPCTHCGKKFGRKDHLKKHLRTH 119
           ++P+ C  C + F R DHL  H+RTH
Sbjct: 1   MKPFQCRICMRNFSRSDHLTTHIRTH 26


>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
           Repeats Of Murine Gli-Kruppel Family Member Hkr3
          Length = 124

 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 47/107 (43%), Gaps = 29/107 (27%)

Query: 39  FNCPHCNVAFSNNGQLKGHIRIHTGERPYKC----------------DAENC-------- 74
             CP C+  F +   LK H R HTGE+P++C                +A NC        
Sbjct: 8   VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF 67

Query: 75  -----GKSFTRNEELTRHKRIHSGLRPYPCTHCGKKFGRKDHLKKHL 116
                 ++F R  EL  H   H+G  PY C+ C ++F +K  L+ H+
Sbjct: 68  TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHM 114



 Score = 42.7 bits (99), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 3/62 (4%)

Query: 33  NQRPKKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHK-RIH 91
           N+  + F C  C   F    +L+ H+  HTGE PYKC +  C + F + ++L  H  ++H
Sbjct: 61  NRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSS--CSQQFMQKKDLQSHMIKLH 118

Query: 92  SG 93
           SG
Sbjct: 119 SG 120


>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
          Length = 60

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 2/61 (3%)

Query: 63  GERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTHFPQ 122
            ERP+ C+   CGK++     L+RH+R H G RP  C  CGK F  +  + +HL+ H  +
Sbjct: 1   SERPFFCNF--CGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK 58

Query: 123 P 123
           P
Sbjct: 59  P 59



 Score = 35.4 bits (80), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 33 NQRPKKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIH 91
          ++RP  F C  C   + +   L  H R H G RP  C    CGK F    E+ RH ++H
Sbjct: 1  SERP--FFCNFCGKTYRDASGLSRHRRAHLGYRPRSC--PECGKCFRDQSEVNRHLKVH 55


>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
          Reveals Two Modes Of Molecular Recognition
 pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
          Reveals Two Modes Of Molecular Recognition
 pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
          Reveals Two Modes Of Molecular Recognition
 pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
          Rrna 55mer (Nmr Structure)
          Length = 87

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 44 CNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPC 99
          C  AF  + QLK H   HT + PY+C  E C K F+    L RH+++H+G   YPC
Sbjct: 9  CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPC 61



 Score = 43.1 bits (100), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 67  YKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTH--CGKKFGRKDHLKKHLRTHFPQP 123
           Y C  ENCGK+F ++ +L  H+  H+   PY C H  C K+F     LK+H + H   P
Sbjct: 2   YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYP 60


>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of
          The Free Structure With Those In Nucleic-Acid Complexes
          Length = 85

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 44 CNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPC 99
          C  AF  + QLK H   HT + PY+C  E C K F+    L RH+++H+G   YPC
Sbjct: 9  CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPC 61



 Score = 43.1 bits (100), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 67  YKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTH--CGKKFGRKDHLKKHLRTHFPQP 123
           Y C  ENCGK+F ++ +L  H+  H+   PY C H  C K+F     LK+H + H   P
Sbjct: 2   YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYP 60


>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
          Nmr, 25 Structures
          Length = 60

 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 39 FNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRH-KRIHSG 93
          F C  C  AF+    LK H R HT E+PY C    C ++FTR + L RH ++IHSG
Sbjct: 3  FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGL--CNRAFTRRDLLIRHAQKIHSG 56



 Score = 45.8 bits (107), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 27/44 (61%)

Query: 72  ENCGKSFTRNEELTRHKRIHSGLRPYPCTHCGKKFGRKDHLKKH 115
           E C ++F R E L RH R H+  +PYPC  C + F R+D L +H
Sbjct: 6   EVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49



 Score = 28.9 bits (63), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 97  YPCTHCGKKFGRKDHLKKHLRTHFPQPRY 125
           + C  C + F R++HLK+H R+H  +  Y
Sbjct: 3   FVCEVCTRAFARQEHLKRHYRSHTNEKPY 31


>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
           Domain In Complex With Kaiso Binding Site Dna
 pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
           In Complex With Kaiso Binding Site Dna
 pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
           In Complex With Methylated Cpg Site Dna
          Length = 133

 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 2/84 (2%)

Query: 39  FNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYP 98
           + C  C  ++     L+ H  IH+ E+ Y C    C K F   E  T+H+  H+G R Y 
Sbjct: 23  YICIVCKRSYVCLTSLRRHFNIHSWEKKYPC--RYCEKVFPLAEYRTKHEIHHTGERRYQ 80

Query: 99  CTHCGKKFGRKDHLKKHLRTHFPQ 122
           C  CGK F     +  H+++   Q
Sbjct: 81  CLACGKSFINYQFMSSHIKSVHSQ 104



 Score = 34.7 bits (78), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 37  KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRH-KRIHS 92
           KK+ C +C   F        H   HTGER Y+C A  CGKSF   + ++ H K +HS
Sbjct: 49  KKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLA--CGKSFINYQFMSSHIKSVHS 103



 Score = 33.9 bits (76), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 26/52 (50%)

Query: 74  CGKSFTRNEELTRHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTHFPQPRY 125
           C +S+     L RH  IHS  + YPC +C K F   ++  KH   H  + RY
Sbjct: 28  CKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRY 79


>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
          Domain From Human Krueppel-Like Factor 15
          Length = 48

 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 25/33 (75%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          E+P+ C    CG  F+R++EL+RH+R HSG++P
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP 42



 Score = 28.9 bits (63), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)

Query: 95  RPYPCTH--CGKKFGRKDHLKKHLRTH 119
           +P+ CT   CG +F R D L +H R+H
Sbjct: 11  KPFACTWPGCGWRFSRSDELSRHRRSH 37


>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          508- 540) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 42.7 bits (99), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 25/33 (75%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          E+PYKC+   CGK FT+N  L  H+RIH+G++P
Sbjct: 10 EKPYKCN--ECGKVFTQNSHLANHQRIHTGVKP 40



 Score = 30.8 bits (68), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 14/25 (56%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           +PY C  CGK F +  HL  H R H
Sbjct: 11  KPYKCNECGKVFTQNSHLANHQRIH 35



 Score = 30.4 bits (67), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K + C  C   F+ N  L  H RIHTG +P
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVKP 40


>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          648- 680) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 25/33 (75%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          E+PYKC+   CGK FT+N  L RH+R+H+G +P
Sbjct: 10 EKPYKCN--ECGKVFTQNSHLARHRRVHTGGKP 40



 Score = 30.8 bits (68), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           +PY C  CGK F +  HL +H R H
Sbjct: 11  KPYKCNECGKVFTQNSHLARHRRVH 35



 Score = 28.9 bits (63), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K + C  C   F+ N  L  H R+HTG +P
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGKP 40


>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          760- 792) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 26/33 (78%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          E+PYKC+   CGK+F++  +L RH+RIH+G +P
Sbjct: 10 EKPYKCN--ECGKAFSQTSKLARHQRIHTGEKP 40



 Score = 34.3 bits (77), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 18/30 (60%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K + C  C  AFS   +L  H RIHTGE+P
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEKP 40



 Score = 29.3 bits (64), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           +PY C  CGK F +   L +H R H
Sbjct: 11  KPYKCNECGKAFSQTSKLARHQRIH 35


>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          396- 428) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          E+PYKC+   CGK FT+N  LT H RIH+G +P
Sbjct: 10 EKPYKCNE--CGKVFTQNSHLTNHWRIHTGEKP 40



 Score = 33.5 bits (75), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 17/30 (56%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K + C  C   F+ N  L  H RIHTGE+P
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40



 Score = 30.8 bits (68), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 14/25 (56%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           +PY C  CGK F +  HL  H R H
Sbjct: 11  KPYKCNECGKVFTQNSHLTNHWRIH 35


>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
          Factor Sp1f2, Minimized Average Structure
 pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna
          Binding Domain (Zinc Finger 2)
          Length = 31

 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 21/29 (72%)

Query: 65 RPYKCDAENCGKSFTRNEELTRHKRIHSG 93
          RP+ C    CGK FTR++EL RHKR H+G
Sbjct: 1  RPFMCTWSYCGKRFTRSDELQRHKRTHTG 29



 Score = 33.5 bits (75), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 15/27 (55%), Positives = 20/27 (74%), Gaps = 2/27 (7%)

Query: 95  RPYPCT--HCGKKFGRKDHLKKHLRTH 119
           RP+ CT  +CGK+F R D L++H RTH
Sbjct: 1   RPFMCTWSYCGKRFTRSDELQRHKRTH 27


>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          340- 372) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 24/33 (72%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          E+PYKC+   CGK FT+N  L RH+ IH+G +P
Sbjct: 10 EKPYKCN--ECGKVFTQNSHLVRHRGIHTGEKP 40



 Score = 28.9 bits (63), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K + C  C   F+ N  L  H  IHTGE+P
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40



 Score = 27.7 bits (60), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           +PY C  CGK F +  HL +H   H
Sbjct: 11  KPYKCNECGKVFTQNSHLVRHRGIH 35


>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          725- 757) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 24/33 (72%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          E+PY CD   CGK+F  + EL RH+RIH+G +P
Sbjct: 10 EKPYVCD--YCGKAFGLSAELVRHQRIHTGEKP 40



 Score = 32.3 bits (72), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 19/30 (63%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K + C +C  AF  + +L  H RIHTGE+P
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40



 Score = 30.8 bits (68), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           +PY C +CGK FG    L +H R H
Sbjct: 11  KPYVCDYCGKAFGLSAELVRHQRIH 35


>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          564- 596) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 24/33 (72%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          E+PYKC+   CGK FT+N  L RH+ IH+G +P
Sbjct: 10 EKPYKCN--ECGKVFTQNSHLARHRGIHTGEKP 40



 Score = 29.6 bits (65), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K + C  C   F+ N  L  H  IHTGE+P
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40



 Score = 28.1 bits (61), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           +PY C  CGK F +  HL +H   H
Sbjct: 11  KPYKCNECGKVFTQNSHLARHRGIH 35


>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
           Zinc Finger Protein 268
          Length = 42

 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 17/28 (60%), Positives = 18/28 (64%)

Query: 92  SGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
           SG  PY C+ CGK F RKD L  H RTH
Sbjct: 6   SGENPYECSECGKAFNRKDQLISHQRTH 33



 Score = 36.2 bits (82), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 2/32 (6%)

Query: 62 TGERPYKCDAENCGKSFTRNEELTRHKRIHSG 93
          +GE PY+C    CGK+F R ++L  H+R H+G
Sbjct: 6  SGENPYECS--ECGKAFNRKDQLISHQRTHAG 35



 Score = 26.2 bits (56), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query: 39 FNCPHCNVAFSNNGQLKGHIRIHTGE 64
          + C  C  AF+   QL  H R H GE
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAGE 36


>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          637- 667) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 25/35 (71%), Gaps = 2/35 (5%)

Query: 62 TGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          +GE+PY C+   CGK+FT   +L  HK +H+G++P
Sbjct: 6  SGEKPYSCN--ECGKAFTFKSQLIVHKGVHTGVKP 38



 Score = 28.5 bits (62), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 14/28 (50%)

Query: 92  SGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
           SG +PY C  CGK F  K  L  H   H
Sbjct: 6   SGEKPYSCNECGKAFTFKSQLIVHKGVH 33



 Score = 26.6 bits (57), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K ++C  C  AF+   QL  H  +HTG +P
Sbjct: 9  KPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38


>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          563- 595) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 25/33 (75%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          E+P+KC  E CGK FT+N +L  H+R+H+G +P
Sbjct: 10 EKPFKC--EECGKRFTQNSQLHSHQRVHTGEKP 40



 Score = 36.2 bits (82), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 18/30 (60%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K F C  C   F+ N QL  H R+HTGE+P
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40



 Score = 27.7 bits (60), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           +P+ C  CGK+F +   L  H R H
Sbjct: 11  KPFKCEECGKRFTQNSQLHSHQRVH 35


>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
           Domains Of Zinc Finger Protein 692
          Length = 79

 Score = 39.3 bits (90), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 3/68 (4%)

Query: 62  TGERPYKCDAENCGKSFTRNEELTRHKR---IHSGLRPYPCTHCGKKFGRKDHLKKHLRT 118
           +G     CD   CG+ F+  + L  HK+   IH      P   CGK F  K HLK+H++ 
Sbjct: 3   SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62

Query: 119 HFPQPRYV 126
           H     Y+
Sbjct: 63  HSDTRDYI 70



 Score = 38.5 bits (88), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 42  PHCNVAFSNNGQLKGHIRI-HTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCT 100
           P C   FSN   L  H +  H  ++ + C    CGKSF   + L  H ++HS  R Y C 
Sbjct: 13  PGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE 72

Query: 101 HCGKKFG 107
             G   G
Sbjct: 73  FSGPSSG 79



 Score = 28.1 bits (61), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 37 KKFNCPH--CNVAFSNNGQLKGHIRIHTGERPYKCD 70
          K F+CP   C  +F+    LK H+++H+  R Y C+
Sbjct: 37 KSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE 72


>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          426- 458) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 38.9 bits (89), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 23/33 (69%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          E+PYKC    CGK+F R+  L  H+RIH+G RP
Sbjct: 10 EKPYKCS--ECGKAFHRHTHLNEHRRIHTGYRP 40



 Score = 31.2 bits (69), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 13/25 (52%), Positives = 16/25 (64%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           +PY C+ CGK F R  HL +H R H
Sbjct: 11  KPYKCSECGKAFHRHTHLNEHRRIH 35



 Score = 29.3 bits (64), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 16/30 (53%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K + C  C  AF  +  L  H RIHTG RP
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40


>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
          592- 624) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 38.9 bits (89), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 24/33 (72%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          E+PYKC+   CGK F  N  L+RH+RIH+G +P
Sbjct: 10 EKPYKCN--ECGKVFRHNSYLSRHQRIHTGEKP 40



 Score = 31.2 bits (69), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 17/30 (56%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K + C  C   F +N  L  H RIHTGE+P
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40



 Score = 27.3 bits (59), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           +PY C  CGK F    +L +H R H
Sbjct: 11  KPYKCNECGKVFRHNSYLSRHQRIH 35


>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
           Human Transcriptional Repressor Ctcf
          Length = 86

 Score = 38.9 bits (89), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 6/62 (9%)

Query: 59  RIHTGERPYKCDAENCGKSFTRNEELTRH-KRIHS-GLRP--YPCTHCGKKFGRKDHLKK 114
           R HTGE+PY C   +C K+F + + L  H KR H     P  + C+ CGK F R++ + +
Sbjct: 8   RTHTGEKPYAC--SHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMAR 65

Query: 115 HL 116
           H 
Sbjct: 66  HA 67



 Score = 33.5 bits (75), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 89  RIHSGLRPYPCTHCGKKFGRKDHLKKHLRTHFPQPRYV 126
           R H+G +PY C+HC K F +K  L  H +  +  P +V
Sbjct: 8   RTHTGEKPYACSHCDKTFRQKQLLDMHFK-RYHDPNFV 44


>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          544- 576) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 38.9 bits (89), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 25/33 (75%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          ERP+KC+   CGKSF ++  L +H+RIH+G +P
Sbjct: 10 ERPHKCN--ECGKSFIQSAHLIQHQRIHTGEKP 40



 Score = 29.3 bits (64), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           RP+ C  CGK F +  HL +H R H
Sbjct: 11  RPHKCNECGKSFIQSAHLIQHQRIH 35



 Score = 28.9 bits (63), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 34 QRPKKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          +RP K  C  C  +F  +  L  H RIHTGE+P
Sbjct: 10 ERPHK--CNECGKSFIQSAHLIQHQRIHTGEKP 40


>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
          (781- 813) From Zinc Finger Protein 473
          Length = 46

 Score = 38.5 bits (88), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 24/33 (72%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          E+PY+C    CGK+F +   LT+H+RIH+G +P
Sbjct: 10 EKPYRCG--ECGKAFAQKANLTQHQRIHTGEKP 40



 Score = 33.1 bits (74), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 17/30 (56%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K + C  C  AF+    L  H RIHTGE+P
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKP 40



 Score = 30.4 bits (67), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           +PY C  CGK F +K +L +H R H
Sbjct: 11  KPYRCGECGKAFAQKANLTQHQRIH 35


>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          312- 344) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 38.5 bits (88), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 26/33 (78%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          E+ YKC+   CGK F+RN +L++H++IH+G +P
Sbjct: 10 EKRYKCN--ECGKVFSRNSQLSQHQKIHTGEKP 40



 Score = 36.6 bits (83), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 19/30 (63%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K++ C  C   FS N QL  H +IHTGE+P
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40



 Score = 26.6 bits (57), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 10/23 (43%), Positives = 12/23 (52%)

Query: 97  YPCTHCGKKFGRKDHLKKHLRTH 119
           Y C  CGK F R   L +H + H
Sbjct: 13  YKCNECGKVFSRNSQLSQHQKIH 35


>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
           Zinc Finger From The Human Enhancer Binding Protein
           Mbp-1
          Length = 57

 Score = 38.5 bits (88), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 27/47 (57%)

Query: 72  ENCGKSFTRNEELTRHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRT 118
           E CG    +   L +H R H+ +RPY CT+C   F  K +L KH+++
Sbjct: 5   EECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51



 Score = 35.8 bits (81), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 38 KFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRH 87
          K+ C  C +       LK HIR HT  RPY C    C  SF     LT+H
Sbjct: 1  KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTY--CNFSFKTKGNLTKH 48


>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          732- 764) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 38.5 bits (88), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 24/33 (72%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          ++PYKC+   CGK FT+N  L RH+ IH+G +P
Sbjct: 10 KKPYKCN--ECGKVFTQNSHLARHRGIHTGEKP 40



 Score = 29.3 bits (64), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K + C  C   F+ N  L  H  IHTGE+P
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40



 Score = 27.7 bits (60), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           +PY C  CGK F +  HL +H   H
Sbjct: 11  KPYKCNECGKVFTQNSHLARHRGIH 35


>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           425- 457) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 38.5 bits (88), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 16/28 (57%), Positives = 19/28 (67%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTHFPQ 122
           RPY C  CGK FGR  HL +HL+ HF +
Sbjct: 11  RPYGCNECGKNFGRHSHLIEHLKRHFRE 38



 Score = 26.2 bits (56), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIH 91
          ERPY C+   CGK+F R+  L  H + H
Sbjct: 10 ERPYGCN--ECGKNFGRHSHLIEHLKRH 35


>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          556- 588) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 38.5 bits (88), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 25/33 (75%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          E+PY+CD   C K+F+ +  LT+H+R+HSG +P
Sbjct: 10 EKPYECDV--CRKAFSHHASLTQHQRVHSGEKP 40



 Score = 32.0 bits (71), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K + C  C  AFS++  L  H R+H+GE+P
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEKP 40


>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          696- 728) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 38.1 bits (87), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          E+PYKC    CGK+F  N   T+H+R+H+G RP
Sbjct: 10 EKPYKC--MECGKAFGDNSSCTQHQRLHTGQRP 40



 Score = 32.0 bits (71), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K + C  C  AF +N     H R+HTG+RP
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40



 Score = 28.5 bits (62), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 14/28 (50%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTHFPQ 122
           +PY C  CGK FG      +H R H  Q
Sbjct: 11  KPYKCMECGKAFGDNSSCTQHQRLHTGQ 38


>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          255- 287) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 38.1 bits (87), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          E+PY C  E CGK+F  + +L  H+RIH+G +P
Sbjct: 10 EKPYNC--EECGKAFIHDSQLQEHQRIHTGEKP 40



 Score = 37.7 bits (86), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 16/30 (53%), Positives = 21/30 (70%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K +NC  C  AF ++ QL+ H RIHTGE+P
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40



 Score = 28.1 bits (61), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           +PY C  CGK F     L++H R H
Sbjct: 11  KPYNCEECGKAFIHDSQLQEHQRIH 35


>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 347
          Length = 46

 Score = 38.1 bits (87), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 14/32 (43%), Positives = 25/32 (78%), Gaps = 2/32 (6%)

Query: 65 RPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          +PY+C+   CGK+F++  +L RH+R+H+G +P
Sbjct: 11 KPYQCN--ECGKAFSQTSKLARHQRVHTGEKP 40



 Score = 33.9 bits (76), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K + C  C  AFS   +L  H R+HTGE+P
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40



 Score = 29.6 bits (65), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           +PY C  CGK F +   L +H R H
Sbjct: 11  KPYQCNECGKAFSQTSKLARHQRVH 35


>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 347
          Length = 46

 Score = 38.1 bits (87), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 22/33 (66%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          E+PYKC    CGK F RN  L RH+ IH+G +P
Sbjct: 10 EKPYKC--HECGKVFRRNSHLARHQLIHTGEKP 40



 Score = 28.5 bits (62), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 15/30 (50%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K + C  C   F  N  L  H  IHTGE+P
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQLIHTGEKP 40



 Score = 28.1 bits (61), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 14/25 (56%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           +PY C  CGK F R  HL +H   H
Sbjct: 11  KPYKCHECGKVFRRNSHLARHQLIH 35


>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          752- 784) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 38.1 bits (87), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 24/33 (72%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          E+PY+C    CGK+F+  + L+ H+RIHSG +P
Sbjct: 10 EKPYECSV--CGKAFSHRQSLSVHQRIHSGKKP 40



 Score = 29.6 bits (65), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K + C  C  AFS+   L  H RIH+G++P
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40



 Score = 28.1 bits (61), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           +PY C+ CGK F  +  L  H R H
Sbjct: 11  KPYECSVCGKAFSHRQSLSVHQRIH 35


>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           581- 609) Of Human Zinc Finger Protein 268
          Length = 42

 Score = 38.1 bits (87), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 17/28 (60%), Positives = 18/28 (64%)

Query: 92  SGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
           SG +PY CT CGK FG K  L  H RTH
Sbjct: 6   SGEKPYECTDCGKAFGLKSQLIIHQRTH 33



 Score = 33.1 bits (74), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 2/32 (6%)

Query: 62 TGERPYKCDAENCGKSFTRNEELTRHKRIHSG 93
          +GE+PY+C   +CGK+F    +L  H+R H+G
Sbjct: 6  SGEKPYECT--DCGKAFGLKSQLIIHQRTHTG 35



 Score = 26.6 bits (57), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 14/28 (50%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGE 64
          K + C  C  AF    QL  H R HTGE
Sbjct: 9  KPYECTDCGKAFGLKSQLIIHQRTHTGE 36


>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          479- 511) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 37.7 bits (86), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 24/33 (72%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          E+P++C  E CGK FT+N  L  H+R+H+G +P
Sbjct: 10 EKPFQC--EECGKRFTQNSHLHSHQRVHTGEKP 40



 Score = 34.3 bits (77), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 17/30 (56%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K F C  C   F+ N  L  H R+HTGE+P
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40



 Score = 30.0 bits (66), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           +P+ C  CGK+F +  HL  H R H
Sbjct: 11  KPFQCEECGKRFTQNSHLHSHQRVH 35


>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          715- 747) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 37.7 bits (86), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          E+PY C+   CGKSF +   L RH+RIH+G +P
Sbjct: 10 EKPYICN--ECGKSFIQKSHLNRHRRIHTGEKP 40



 Score = 32.3 bits (72), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 13/25 (52%), Positives = 16/25 (64%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           +PY C  CGK F +K HL +H R H
Sbjct: 11  KPYICNECGKSFIQKSHLNRHRRIH 35



 Score = 28.1 bits (61), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K + C  C  +F     L  H RIHTGE+P
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEKP 40


>pdb|1ZFD|A Chain A, Swi5 Zinc Finger Domain 2, Nmr, 45 Structures
          Length = 32

 Score = 37.7 bits (86), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 15/28 (53%), Positives = 19/28 (67%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIH 91
          +RPY CD   C K+F RN +L RHK+ H
Sbjct: 1  DRPYSCDHPGCDKAFVRNHDLIRHKKSH 28


>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           628- 660) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 37.4 bits (85), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 15/25 (60%), Positives = 17/25 (68%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           RP+ C  CGK FGR+ HL  HLR H
Sbjct: 11  RPFKCNECGKGFGRRSHLAGHLRLH 35



 Score = 31.2 bits (69), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 2/29 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHS 92
          ERP+KC+   CGK F R   L  H R+HS
Sbjct: 10 ERPFKCN--ECGKGFGRRSHLAGHLRLHS 36



 Score = 27.3 bits (59), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)

Query: 34 QRPKKFNCPHCNVAFSNNGQLKGHIRIHTGER 65
          +RP  F C  C   F     L GH+R+H+ E+
Sbjct: 10 ERP--FKCNECGKGFGRRSHLAGHLRLHSREK 39


>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
          Zinc Finger Protein 32
          Length = 41

 Score = 37.4 bits (85), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 25/35 (71%), Gaps = 2/35 (5%)

Query: 62 TGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          +GE+PY+C  + CGKSF++   L  H+R+H+G  P
Sbjct: 6  SGEKPYQC--KECGKSFSQRGSLAVHERLHTGSGP 38



 Score = 30.8 bits (68), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 92  SGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
           SG +PY C  CGK F ++  L  H R H
Sbjct: 6   SGEKPYQCKECGKSFSQRGSLAVHERLH 33



 Score = 30.8 bits (68), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K + C  C  +FS  G L  H R+HTG  P
Sbjct: 9  KPYQCKECGKSFSQRGSLAVHERLHTGSGP 38


>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          603- 635) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 37.4 bits (85), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 24/33 (72%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          E+PY+C    CGKSFT+  +L  H++IH+G +P
Sbjct: 10 EKPYECSI--CGKSFTKKSQLHVHQQIHTGEKP 40



 Score = 30.8 bits (68), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K + C  C  +F+   QL  H +IHTGE+P
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKP 40



 Score = 28.1 bits (61), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           +PY C+ CGK F +K  L  H + H
Sbjct: 11  KPYECSICGKSFTKKSQLHVHQQIH 35


>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          528- 560) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 37.4 bits (85), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 22/33 (66%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          E+PYKCD   C KSF     LT H+RIH+G +P
Sbjct: 10 EKPYKCDV--CHKSFRYGSSLTVHQRIHTGEKP 40



 Score = 28.9 bits (63), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K + C  C+ +F     L  H RIHTGE+P
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40


>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          859- 889) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 37.0 bits (84), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 22/32 (68%), Gaps = 2/32 (6%)

Query: 62 TGERPYKCDAENCGKSFTRNEELTRHKRIHSG 93
          T E+PY+C    CGK+F RN +L  H+R HSG
Sbjct: 8  TREKPYECS--ECGKAFIRNSQLIVHQRTHSG 37



 Score = 32.3 bits (72), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 13/25 (52%), Positives = 15/25 (60%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           +PY C+ CGK F R   L  H RTH
Sbjct: 11  KPYECSECGKAFIRNSQLIVHQRTH 35



 Score = 30.8 bits (68), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 18/37 (48%)

Query: 28 SMKAKNQRPKKFNCPHCNVAFSNNGQLKGHIRIHTGE 64
          S  +   R K + C  C  AF  N QL  H R H+GE
Sbjct: 2  SSGSSGTREKPYECSECGKAFIRNSQLIVHQRTHSGE 38


>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
 pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
 pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
          Form
 pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
 pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
          Length = 57

 Score = 37.0 bits (84), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 40 NCPHCNVAFSNNGQLKGHIRIHTGERPYKCD 70
           C +C   F +N  L  H+R HTGE+PYKC+
Sbjct: 6  ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCE 36



 Score = 37.0 bits (84), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 23/46 (50%)

Query: 74  CGKSFTRNEELTRHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
           CGK F  N  L  H R H+G +PY C  C     +K  L+ HL  H
Sbjct: 10  CGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55


>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          612- 644) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 37.0 bits (84), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 16/30 (53%), Positives = 19/30 (63%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K F C  C  +FS + QL  H RIHTGE+P
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEKP 40



 Score = 36.6 bits (83), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 24/33 (72%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          E+P++C    CGKSF+ + +L  H+RIH+G +P
Sbjct: 10 EKPFECA--ECGKSFSISSQLATHQRIHTGEKP 40



 Score = 28.1 bits (61), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 12/25 (48%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           +P+ C  CGK F     L  H R H
Sbjct: 11  KPFECAECGKSFSISSQLATHQRIH 35


>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           693- 723) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 37.0 bits (84), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 15/28 (53%), Positives = 20/28 (71%)

Query: 92  SGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
           SG++PY C+ CGK F  K +L  H+RTH
Sbjct: 6   SGVKPYGCSECGKAFRSKSYLIIHMRTH 33



 Score = 30.4 bits (67), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K + C  C  AF +   L  H+R HTGE+P
Sbjct: 9  KPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38



 Score = 29.6 bits (65), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 62 TGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          +G +PY C    CGK+F     L  H R H+G +P
Sbjct: 6  SGVKPYGCS--ECGKAFRSKSYLIIHMRTHTGEKP 38


>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          491- 523) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 36.6 bits (83), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          ERPY C    CGK+FT    L +H++IH+G +P
Sbjct: 10 ERPYICTV--CGKAFTDRSNLIKHQKIHTGEKP 40



 Score = 30.4 bits (67), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 13/25 (52%), Positives = 16/25 (64%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           RPY CT CGK F  + +L KH + H
Sbjct: 11  RPYICTVCGKAFTDRSNLIKHQKIH 35



 Score = 29.6 bits (65), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 34 QRPKKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          +RP  + C  C  AF++   L  H +IHTGE+P
Sbjct: 10 ERP--YICTVCGKAFTDRSNLIKHQKIHTGEKP 40


>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          584- 616) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 36.6 bits (83), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 16/30 (53%), Positives = 18/30 (60%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K F C  C  AF  N  L  H+RIHTGE+P
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEKP 40



 Score = 35.0 bits (79), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          E+P+KC  + CGK+F +N  L  H RIH+G +P
Sbjct: 10 EKPFKC--KECGKAFRQNIHLASHLRIHTGEKP 40



 Score = 30.4 bits (67), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           +P+ C  CGK F +  HL  HLR H
Sbjct: 11  KPFKCKECGKAFRQNIHLASHLRIH 35


>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          668- 700) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 36.6 bits (83), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 25/33 (75%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          E+PY+C  + CGK+F++   L +H+R+H+G +P
Sbjct: 10 EKPYEC--KECGKAFSQTTHLIQHQRVHTGEKP 40



 Score = 33.1 bits (74), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 17/30 (56%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K + C  C  AFS    L  H R+HTGE+P
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEKP 40



 Score = 31.2 bits (69), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           +PY C  CGK F +  HL +H R H
Sbjct: 11  KPYECKECGKAFSQTTHLIQHQRVH 35


>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          435- 467) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 36.6 bits (83), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          E+PY+C   +CGKSF +  +L  H+RIH+G  P
Sbjct: 10 EKPYECS--DCGKSFIKKSQLHVHQRIHTGENP 40



 Score = 30.8 bits (68), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 16/30 (53%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K + C  C  +F    QL  H RIHTGE P
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGENP 40



 Score = 29.6 bits (65), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           +PY C+ CGK F +K  L  H R H
Sbjct: 11  KPYECSDCGKSFIKKSQLHVHQRIH 35


>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
          Zinc Finger Protein 473
          Length = 42

 Score = 36.2 bits (82), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 15/32 (46%), Positives = 25/32 (78%), Gaps = 2/32 (6%)

Query: 62 TGERPYKCDAENCGKSFTRNEELTRHKRIHSG 93
          +GE+PY C  + CGK+FT++  L+ H+R+H+G
Sbjct: 6  SGEKPYVC--QECGKAFTQSSCLSIHRRVHTG 35



 Score = 29.6 bits (65), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 15/28 (53%)

Query: 92  SGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
           SG +PY C  CGK F +   L  H R H
Sbjct: 6   SGEKPYVCQECGKAFTQSSCLSIHRRVH 33



 Score = 26.9 bits (58), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGE 64
          K + C  C  AF+ +  L  H R+HTGE
Sbjct: 9  KPYVCQECGKAFTQSSCLSIHRRVHTGE 36


>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
           Of Zinc Finger Protein 484
          Length = 42

 Score = 36.2 bits (82), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 16/28 (57%), Positives = 17/28 (60%)

Query: 92  SGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
           SG +PY CT CGK F RK H   H R H
Sbjct: 6   SGEKPYVCTECGKAFIRKSHFITHERIH 33



 Score = 34.3 bits (77), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)

Query: 62 TGERPYKCDAENCGKSFTRNEELTRHKRIHSG 93
          +GE+PY C    CGK+F R      H+RIH+G
Sbjct: 6  SGEKPYVCT--ECGKAFIRKSHFITHERIHTG 35


>pdb|2AB3|A Chain A, Solution Structures And Characterization Of Hiv Rre Iib
          Rna Targeting Zinc Finger Proteins
          Length = 29

 Score = 36.2 bits (82), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 15/27 (55%), Positives = 19/27 (70%)

Query: 67 YKCDAENCGKSFTRNEELTRHKRIHSG 93
          Y C  ENCG+SF    +L RHK+IH+G
Sbjct: 3  YVCHFENCGRSFNDRRKLNRHKKIHTG 29


>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 32
          Length = 41

 Score = 36.2 bits (82), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 24/35 (68%), Gaps = 2/35 (5%)

Query: 62 TGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          +G+R Y+C  + CGKSF +   LT H+RIH+G  P
Sbjct: 6  SGQRVYEC--QECGKSFRQKGSLTLHERIHTGSGP 38



 Score = 29.6 bits (65), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 15/28 (53%)

Query: 92  SGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
           SG R Y C  CGK F +K  L  H R H
Sbjct: 6   SGQRVYECQECGKSFRQKGSLTLHERIH 33



 Score = 28.5 bits (62), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 14/28 (50%)

Query: 39 FNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          + C  C  +F   G L  H RIHTG  P
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTGSGP 38


>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 347
          Length = 46

 Score = 35.8 bits (81), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          E+PY+C+   CGK+F+    LT H+ IH+G +P
Sbjct: 10 EKPYECN--QCGKAFSVRSSLTTHQAIHTGKKP 40



 Score = 28.9 bits (63), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K + C  C  AFS    L  H  IHTG++P
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40



 Score = 26.6 bits (57), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 12/25 (48%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           +PY C  CGK F  +  L  H   H
Sbjct: 11  KPYECNQCGKAFSVRSSLTTHQAIH 35


>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          369- 401) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 35.8 bits (81), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 24/33 (72%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          E+P+KC    CGKS+ +   LT+H+R+H+G +P
Sbjct: 10 EKPFKCG--ECGKSYNQRVHLTQHQRVHTGEKP 40



 Score = 29.3 bits (64), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K F C  C  +++    L  H R+HTGE+P
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40



 Score = 28.5 bits (62), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           +P+ C  CGK + ++ HL +H R H
Sbjct: 11  KPFKCGECGKSYNQRVHLTQHQRVH 35


>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
          Zinc Finger Protein 32
          Length = 42

 Score = 35.8 bits (81), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          E+PY+CD   CGK+F++   L  H R+H+G  P
Sbjct: 9  EKPYRCD--QCGKAFSQKGSLIVHIRVHTGSGP 39



 Score = 34.7 bits (78), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 17/30 (56%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K + C  C  AFS  G L  HIR+HTG  P
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39



 Score = 30.8 bits (68), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           +PY C  CGK F +K  L  H+R H
Sbjct: 10  KPYRCDQCGKAFSQKGSLIVHIRVH 34


>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          397- 429) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 35.8 bits (81), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          E+PYKC    CGK+F  +  L +H  +HSG RP
Sbjct: 10 EKPYKCQV--CGKAFRVSSHLVQHHSVHSGERP 40



 Score = 26.9 bits (58), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K + C  C  AF  +  L  H  +H+GERP
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40



 Score = 25.8 bits (55), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 13/25 (52%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           +PY C  CGK F    HL +H   H
Sbjct: 11  KPYKCQVCGKAFRVSSHLVQHHSVH 35


>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 347
          Length = 46

 Score = 35.8 bits (81), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          E+PYKC+   CGK+F  +  LT H+ IH+G +P
Sbjct: 10 EKPYKCN--ECGKAFRAHSNLTTHQVIHTGEKP 40



 Score = 28.1 bits (61), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K + C  C  AF  +  L  H  IHTGE+P
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40


>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          199- 231) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 35.4 bits (80), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          E+ YKCD   CGK F+++  L  H+R+H+G +P
Sbjct: 10 EKCYKCDV--CGKEFSQSSHLQTHQRVHTGEKP 40



 Score = 31.2 bits (69), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K + C  C   FS +  L+ H R+HTGE+P
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40



 Score = 28.5 bits (62), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 97  YPCTHCGKKFGRKDHLKKHLRTH 119
           Y C  CGK+F +  HL+ H R H
Sbjct: 13  YKCDVCGKEFSQSSHLQTHQRVH 35


>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
          Length = 30

 Score = 35.0 bits (79), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 14/29 (48%), Positives = 20/29 (68%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGER 65
          K + C HC   F++ G L+ H+RIHTGE+
Sbjct: 2  KPYVCIHCQRQFADPGALQRHVRIHTGEK 30



 Score = 30.4 bits (67), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 94  LRPYPCTHCGKKFGRKDHLKKHLRTH 119
           ++PY C HC ++F     L++H+R H
Sbjct: 1   MKPYVCIHCQRQFADPGALQRHVRIH 26


>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          719- 751) Of Human Zinc Finger Protein 268
          Length = 46

 Score = 35.0 bits (79), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          E+P++C    CGKSF+ N +L  H+RIH+G  P
Sbjct: 10 EKPHEC--RECGKSFSFNSQLIVHQRIHTGENP 40



 Score = 31.6 bits (70), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 16/30 (53%), Positives = 17/30 (56%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K   C  C  +FS N QL  H RIHTGE P
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIHTGENP 40


>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
           Suppressor Protein (Wt1) Finger 3
          Length = 29

 Score = 35.0 bits (79), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 14/25 (56%), Positives = 17/25 (68%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           +P+ C  C +KF R DHLK H RTH
Sbjct: 1   KPFQCKTCQRKFSRSDHLKTHTRTH 25



 Score = 32.0 bits (71), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 14/29 (48%), Positives = 16/29 (55%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGER 65
          K F C  C   FS +  LK H R HTGE+
Sbjct: 1  KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29



 Score = 25.8 bits (55), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 2/29 (6%)

Query: 65 RPYKCDAENCGKSFTRNEELTRHKRIHSG 93
          +P++C  + C + F+R++ L  H R H+G
Sbjct: 1  KPFQC--KTCQRKFSRSDHLKTHTRTHTG 27


>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          687- 719) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 35.0 bits (79), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          ER Y+C    CGK+F R   L  H+RIH+G +P
Sbjct: 10 ERHYECS--ECGKAFARKSTLIMHQRIHTGEKP 40



 Score = 31.6 bits (70), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 39 FNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          + C  C  AF+    L  H RIHTGE+P
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKP 40



 Score = 29.6 bits (65), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 13/25 (52%), Positives = 14/25 (56%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           R Y C+ CGK F RK  L  H R H
Sbjct: 11  RHYECSECGKAFARKSTLIMHQRIH 35


>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           355- 385) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 34.7 bits (78), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 15/27 (55%), Positives = 16/27 (59%)

Query: 96  PYPCTHCGKKFGRKDHLKKHLRTHFPQ 122
           PY C  CGK F RKD L  H +TH  Q
Sbjct: 12  PYECCECGKVFSRKDQLVSHQKTHSGQ 38



 Score = 32.0 bits (71), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSG 93
          E PY+C    CGK F+R ++L  H++ HSG
Sbjct: 10 ENPYECC--ECGKVFSRKDQLVSHQKTHSG 37


>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          641- 673) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 34.7 bits (78), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 2/35 (5%)

Query: 62 TGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          T E P+KC+   CGK+F+ +  L++H+ IH+G  P
Sbjct: 8  TKEHPFKCN--ECGKTFSHSAHLSKHQLIHAGENP 40



 Score = 27.3 bits (59), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 11/24 (45%), Positives = 12/24 (50%)

Query: 96  PYPCTHCGKKFGRKDHLKKHLRTH 119
           P+ C  CGK F    HL KH   H
Sbjct: 12  PFKCNECGKTFSHSAHLSKHQLIH 35



 Score = 26.9 bits (58), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 14/28 (50%)

Query: 39 FNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          F C  C   FS++  L  H  IH GE P
Sbjct: 13 FKCNECGKTFSHSAHLSKHQLIHAGENP 40


>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
          (699- 729) From Zinc Finger Protein 473
          Length = 44

 Score = 34.7 bits (78), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 26/35 (74%), Gaps = 2/35 (5%)

Query: 62 TGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          +G++P  C+   CGK+F ++  L++H+RIHSG +P
Sbjct: 6  SGKKPLVCN--ECGKTFRQSSCLSKHQRIHSGEKP 38



 Score = 28.5 bits (62), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 15/28 (53%)

Query: 92  SGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
           SG +P  C  CGK F +   L KH R H
Sbjct: 6   SGKKPLVCNECGKTFRQSSCLSKHQRIH 33



 Score = 26.2 bits (56), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K   C  C   F  +  L  H RIH+GE+P
Sbjct: 9  KPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38


>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          311- 343) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 34.7 bits (78), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)

Query: 62 TGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          T E+P++CD   C KSF +   L  H+ IH+G +P
Sbjct: 8  TAEKPFRCD--TCDKSFRQRSALNSHRMIHTGEKP 40



 Score = 30.4 bits (67), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K F C  C+ +F     L  H  IHTGE+P
Sbjct: 11 KPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40


>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          631- 663) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 34.7 bits (78), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          E+PY+C    CGK+FT    L  H++IH+G +P
Sbjct: 10 EKPYRC--AECGKAFTDRSNLFTHQKIHTGEKP 40



 Score = 31.6 bits (70), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K + C  C  AF++   L  H +IHTGE+P
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40



 Score = 25.8 bits (55), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           +PY C  CGK F  + +L  H + H
Sbjct: 11  KPYRCAECGKAFTDRSNLFTHQKIH 35


>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
           An Extension To The Rules For Zinc-FingerDNA RECOGNITION
 pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
           An Extension To The Rules For Zinc-FingerDNA RECOGNITION
          Length = 66

 Score = 34.3 bits (77), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 10/60 (16%)

Query: 63  GERPYKCDAENCGKSFTRNEE-----LTRHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLR 117
           GE  Y+C    C + +T         +T HKR    ++ YPC  C K+F RKD++  H++
Sbjct: 7   GEHTYRCKV--CSRVYTHISNFCRHYVTSHKR---NVKVYPCPFCFKEFTRKDNMTAHVK 61


>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          551- 583) Of Human Zinc Finger Protein 268
          Length = 46

 Score = 34.3 bits (77), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          E PY+C    CGK+F+R  +L  H+R H+G +P
Sbjct: 10 ENPYEC--HECGKAFSRKYQLISHQRTHAGEKP 40



 Score = 30.8 bits (68), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 14/24 (58%), Positives = 14/24 (58%)

Query: 96  PYPCTHCGKKFGRKDHLKKHLRTH 119
           PY C  CGK F RK  L  H RTH
Sbjct: 12  PYECHECGKAFSRKYQLISHQRTH 35



 Score = 29.3 bits (64), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 15/28 (53%)

Query: 39 FNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          + C  C  AFS   QL  H R H GE+P
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKP 40


>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           385- 413) Of Human Zinc Finger Protein 268
          Length = 42

 Score = 34.3 bits (77), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 15/28 (53%), Positives = 16/28 (57%)

Query: 92  SGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
           SG +PY C  CGK FG K  L  H R H
Sbjct: 6   SGQKPYVCNECGKAFGLKSQLIIHERIH 33



 Score = 33.5 bits (75), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 2/32 (6%)

Query: 62 TGERPYKCDAENCGKSFTRNEELTRHKRIHSG 93
          +G++PY C+   CGK+F    +L  H+RIH+G
Sbjct: 6  SGQKPYVCN--ECGKAFGLKSQLIIHERIHTG 35



 Score = 27.7 bits (60), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 28 SMKAKNQRPKKFNCPHCNVAFSNNGQLKGHIRIHTGE 64
          S  +  Q+P  + C  C  AF    QL  H RIHTGE
Sbjct: 2  SSGSSGQKP--YVCNECGKAFGLKSQLIIHERIHTGE 36


>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 34.3 bits (77), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 16/30 (53%), Positives = 20/30 (66%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K F+C  C  AFS++  L  H RIHTGE+P
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40



 Score = 33.5 bits (75), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 24/33 (72%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          E+P+ C   +CGK+F+ +  L +H+RIH+G +P
Sbjct: 10 EKPFDC--IDCGKAFSDHIGLNQHRRIHTGEKP 40


>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          887- 919) Of Human Zinc Finger Protein 268
          Length = 46

 Score = 34.3 bits (77), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          E+PY C+   CGK+F++   L+ H+R H+G +P
Sbjct: 10 EKPYGCN--ECGKTFSQKSILSAHQRTHTGEKP 40



 Score = 31.6 bits (70), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 13/25 (52%), Positives = 15/25 (60%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           +PY C  CGK F +K  L  H RTH
Sbjct: 11  KPYGCNECGKTFSQKSILSAHQRTH 35



 Score = 30.4 bits (67), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 15/30 (50%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K + C  C   FS    L  H R HTGE+P
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKP 40


>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          301- 331) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 33.9 bits (76), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%)

Query: 62 TGERPYKCDAENCGKSFTRNEELTRHKRIHSGLR 95
          +GE+PY C+   CGK F+    L  H+RIH+G +
Sbjct: 6  SGEKPYGCN--ECGKDFSSKSYLIVHQRIHTGEK 37



 Score = 32.3 bits (72), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 16/28 (57%)

Query: 92  SGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
           SG +PY C  CGK F  K +L  H R H
Sbjct: 6   SGEKPYGCNECGKDFSSKSYLIVHQRIH 33



 Score = 27.3 bits (59), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 16/29 (55%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGER 65
          K + C  C   FS+   L  H RIHTGE+
Sbjct: 9  KPYGCNECGKDFSSKSYLIVHQRIHTGEK 37


>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
           Finger Protein 278
          Length = 45

 Score = 33.9 bits (76), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 19/28 (67%)

Query: 92  SGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
           SG +PY C  CG +F RKD +  H+R+H
Sbjct: 6   SGEKPYSCPVCGLRFKRKDRMSYHVRSH 33



 Score = 28.1 bits (61), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 62 TGERPYKCDAENCGKSFTRNEELTRHKRIHSG 93
          +GE+PY C    CG  F R + ++ H R H G
Sbjct: 6  SGEKPYSCPV--CGLRFKRKDRMSYHVRSHDG 35


>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          395- 427) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 33.9 bits (76), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          E+P+KC  E CGK F  N +   H+R HSG +P
Sbjct: 10 EKPFKC--EECGKGFYTNSQCYSHQRSHSGEKP 40



 Score = 30.0 bits (66), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 15/30 (50%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K F C  C   F  N Q   H R H+GE+P
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40


>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          507- 539) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 33.9 bits (76), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          E+PYKC  E CGK +     L  H+++H+G RP
Sbjct: 10 EKPYKC--EKCGKGYNSKFNLDMHQKVHTGERP 40



 Score = 27.7 bits (60), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K + C  C   +++   L  H ++HTGERP
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40


>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
          Finger Protein 278
          Length = 54

 Score = 33.9 bits (76), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIR-IHTGERPYKCDAENCGKS 77
          K + C  C   FS    L GHI+ +HT ERP+KC     G S
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52



 Score = 32.7 bits (73), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 20/40 (50%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTHFPQPRYVSCYPYMYG 134
           +PY C  CGK F R DHL  H++      R   C  ++ G
Sbjct: 11  KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSG 50



 Score = 30.8 bits (68), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 3/36 (8%)

Query: 65 RPYKCDAENCGKSFTRNEELTRH-KRIHSGLRPYPC 99
          +PY C  ++CGK F+R + L  H K++H+  RP+ C
Sbjct: 11 KPYIC--QSCGKGFSRPDHLNGHIKQVHTSERPHKC 44


>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          367- 399) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 33.9 bits (76), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          E+PY C  + CGKSF     L +H+R+HSG +P
Sbjct: 10 EKPYNC--KECGKSFRWASCLLKHQRVHSGEKP 40



 Score = 28.1 bits (61), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K +NC  C  +F     L  H R+H+GE+P
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSGEKP 40



 Score = 26.2 bits (56), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 13/25 (52%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           +PY C  CGK F     L KH R H
Sbjct: 11  KPYNCKECGKSFRWASCLLKHQRVH 35


>pdb|2AB7|A Chain A, Solution Structures And Characterization Of Hiv Rre Iib
          Rna Targeting Zinc Finger Proteins
          Length = 29

 Score = 33.9 bits (76), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 14/26 (53%), Positives = 18/26 (69%)

Query: 67 YKCDAENCGKSFTRNEELTRHKRIHS 92
          Y C  ENCG+SF    +L RHK+IH+
Sbjct: 3  YVCHFENCGRSFNDRRKLNRHKKIHT 28


>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          441- 469) Of Human Zinc Finger Protein 268
          Length = 42

 Score = 33.9 bits (76), Expect = 0.034,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 2/33 (6%)

Query: 62 TGERPYKCDAENCGKSFTRNEELTRHKRIHSGL 94
          +GE+PY C   +CGK+FT   +L  H+ IH+G+
Sbjct: 6  SGEKPYVC--SDCGKAFTFKSQLIVHQGIHTGV 36



 Score = 28.1 bits (61), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 15/28 (53%)

Query: 92  SGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
           SG +PY C+ CGK F  K  L  H   H
Sbjct: 6   SGEKPYVCSDCGKAFTFKSQLIVHQGIH 33


>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           775- 807) Of Human Zinc Finger Protein 268
          Length = 46

 Score = 33.9 bits (76), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 13/25 (52%), Positives = 17/25 (68%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           +PY C+ CGK F  K +L  H+RTH
Sbjct: 11  KPYGCSECGKAFSSKSYLIIHMRTH 35



 Score = 32.0 bits (71), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          E+PY C    CGK+F+    L  H R HSG +P
Sbjct: 10 EKPYGCS--ECGKAFSSKSYLIIHMRTHSGEKP 40



 Score = 31.6 bits (70), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K + C  C  AFS+   L  H+R H+GE+P
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40


>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          283- 315) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 33.5 bits (75), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          E+P+KCD   CGKSF     L RH  +H+  +P
Sbjct: 10 EKPFKCDI--CGKSFCGRSRLNRHSMVHTAEKP 40



 Score = 26.2 bits (56), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K F C  C  +F    +L  H  +HT E+P
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40


>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
          Zinc Finger Protein 224
          Length = 46

 Score = 33.5 bits (75), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSG 93
          E+PYKC  E+CGK + R   L  H+R+H G
Sbjct: 10 EKPYKC--EDCGKGYNRRLNLDMHQRVHMG 37



 Score = 28.9 bits (63), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTHFPQ 122
           +PY C  CGK + R+ +L  H R H  +
Sbjct: 11  KPYKCEDCGKGYNRRLNLDMHQRVHMGE 38


>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
          659- 691) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 33.5 bits (75), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 2/32 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLR 95
          E+PYKC   +CGK+FTR   L  H++ H+G R
Sbjct: 10 EKPYKCS--DCGKAFTRKSGLHIHQQSHTGER 39



 Score = 28.9 bits (63), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           +PY C+ CGK F RK  L  H ++H
Sbjct: 11  KPYKCSDCGKAFTRKSGLHIHQQSH 35



 Score = 25.4 bits (54), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGER 65
          K + C  C  AF+    L  H + HTGER
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGER 39


>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 32
          Length = 45

 Score = 33.5 bits (75), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 15/29 (51%), Positives = 17/29 (58%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGER 65
          K F C HC  +F   G L  H RIHTGE+
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEK 39



 Score = 31.6 bits (70), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 13/25 (52%), Positives = 16/25 (64%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           +P+ CTHCGK F  K +L  H R H
Sbjct: 11  KPFECTHCGKSFRAKGNLVTHQRIH 35



 Score = 31.2 bits (69), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)

Query: 64  ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCT 100
           ++P++C   +CGKSF     L  H+RIH+G +  P +
Sbjct: 10  QKPFECT--HCGKSFRAKGNLVTHQRIHTGEKSGPSS 44


>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
           Transcriptional Repressor Ctcf Protein
          Length = 77

 Score = 33.5 bits (75), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 59  RIHTGERPYKCDAENCGKSFTRNEELTRH--KRIHSGLRPYPCTHCGKKFGRKDHLKKHL 116
           R H+GE+PY+C    C   FT++  +  H  ++    +  + C HC     RK  L  HL
Sbjct: 8   RTHSGEKPYECYI--CHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL 65

Query: 117 R 117
           R
Sbjct: 66  R 66



 Score = 27.3 bits (59), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 9/31 (29%), Positives = 16/31 (51%)

Query: 29 MKAKNQRPKKFNCPHCNVAFSNNGQLKGHIR 59
          ++   +   KF+CPHC+   +    L  H+R
Sbjct: 36 LQKHTENVAKFHCPHCDTVIARKSDLGVHLR 66


>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          640- 672) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 33.1 bits (74), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          E+PY+C    C K+FT+   L +H++ H+G +P
Sbjct: 10 EKPYECKV--CSKAFTQKAHLAQHQKTHTGEKP 40



 Score = 30.4 bits (67), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K + C  C+ AF+    L  H + HTGE+P
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40



 Score = 30.0 bits (66), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           +PY C  C K F +K HL +H +TH
Sbjct: 11  KPYECKVCSKAFTQKAHLAQHQKTH 35


>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          379- 411) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 33.1 bits (74), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 17/30 (56%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K F C  C  AF+    L  H +IHTGE+P
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEKP 40



 Score = 32.7 bits (73), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 19/27 (70%)

Query: 70 DAENCGKSFTRNEELTRHKRIHSGLRP 96
          +   CGK+FTR   L+ H++IH+G +P
Sbjct: 14 ECTECGKAFTRKSTLSMHQKIHTGEKP 40



 Score = 26.9 bits (58), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 97  YPCTHCGKKFGRKDHLKKHLRTH 119
           + CT CGK F RK  L  H + H
Sbjct: 13  FECTECGKAFTRKSTLSMHQKIH 35


>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           809- 841) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 33.1 bits (74), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 13/25 (52%), Positives = 15/25 (60%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           +PY C  CGK F    HL +HLR H
Sbjct: 11  KPYSCNVCGKAFVLSAHLNQHLRVH 35



 Score = 30.8 bits (68), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHS 92
          E+PY C+   CGK+F  +  L +H R+H+
Sbjct: 10 EKPYSCNV--CGKAFVLSAHLNQHLRVHT 36



 Score = 25.8 bits (55), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGE 64
          K ++C  C  AF  +  L  H+R+HT E
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQE 38


>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          536- 568) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 33.1 bits (74), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)

Query: 65 RPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          +PY C+   CGK+F+    LT H+ IH+G +P
Sbjct: 11 KPYMCN--ECGKAFSVYSSLTTHQVIHTGEKP 40



 Score = 29.3 bits (64), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 16/30 (53%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K + C  C  AFS    L  H  IHTGE+P
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40



 Score = 25.8 bits (55), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 10/26 (38%), Positives = 12/26 (46%)

Query: 94  LRPYPCTHCGKKFGRKDHLKKHLRTH 119
           ++PY C  CGK F     L  H   H
Sbjct: 10  VKPYMCNECGKAFSVYSSLTTHQVIH 35


>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 268
          Length = 42

 Score = 32.7 bits (73), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 14/32 (43%), Positives = 24/32 (75%), Gaps = 2/32 (6%)

Query: 62 TGERPYKCDAENCGKSFTRNEELTRHKRIHSG 93
          +GE+ ++C+  NCGK+F+   +L  H+RIH+G
Sbjct: 6  SGEKLHECN--NCGKAFSFKSQLIIHQRIHTG 35



 Score = 27.7 bits (60), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 14/24 (58%), Positives = 15/24 (62%)

Query: 41 CPHCNVAFSNNGQLKGHIRIHTGE 64
          C +C  AFS   QL  H RIHTGE
Sbjct: 13 CNNCGKAFSFKSQLIIHQRIHTGE 36



 Score = 26.2 bits (56), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 15/28 (53%)

Query: 92  SGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
           SG + + C +CGK F  K  L  H R H
Sbjct: 6   SGEKLHECNNCGKAFSFKSQLIIHQRIH 33


>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          415- 447) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 32.7 bits (73), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 17/30 (56%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K F C  C   F+ +  L  H RIHTGE+P
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIHTGEKP 40



 Score = 32.7 bits (73), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 22/30 (73%), Gaps = 2/30 (6%)

Query: 67 YKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          +KC+   C K+FT++  LT H+RIH+G +P
Sbjct: 13 FKCN--ECKKTFTQSSSLTVHQRIHTGEKP 40


>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          519- 551) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 32.7 bits (73), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 2/32 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLR 95
          E+PYKC   +CGKSFT    L  H++ H+G R
Sbjct: 10 EKPYKCS--DCGKSFTWKSRLRIHQKCHTGER 39



 Score = 26.9 bits (58), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           +PY C+ CGK F  K  L+ H + H
Sbjct: 11  KPYKCSDCGKSFTWKSRLRIHQKCH 35



 Score = 26.6 bits (57), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGER 65
          K + C  C  +F+   +L+ H + HTGER
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGER 39


>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          368- 400) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 32.7 bits (73), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          E+PYKC+   CGK+F     L  H+  HSG +P
Sbjct: 10 EKPYKCN--ECGKAFRARSSLAIHQATHSGEKP 40



 Score = 26.9 bits (58), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 13/25 (52%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           +PY C  CGK F  +  L  H  TH
Sbjct: 11  KPYKCNECGKAFRARSSLAIHQATH 35


>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          547- 579) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 32.7 bits (73), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          ER Y+C    CGK+F +   L+ H+RIH G +P
Sbjct: 10 ERHYECS--ECGKAFIQKSTLSMHQRIHRGEKP 40



 Score = 28.9 bits (63), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 14/28 (50%)

Query: 39 FNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          + C  C  AF     L  H RIH GE+P
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKP 40



 Score = 27.3 bits (59), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 14/25 (56%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           R Y C+ CGK F +K  L  H R H
Sbjct: 11  RHYECSECGKAFIQKSTLSMHQRIH 35


>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 224
          Length = 46

 Score = 32.3 bits (72), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          E+ Y C  + CGKSF+R   L +H+R+HSG +P
Sbjct: 10 EKLYNC--KECGKSFSRAPCLLKHERLHSGEKP 40



 Score = 29.3 bits (64), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K +NC  C  +FS    L  H R+H+GE+P
Sbjct: 11 KLYNCKECGKSFSRAPCLLKHERLHSGEKP 40


>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
          771- 803) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 32.3 bits (72), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          E+PY C    CGK+FT    L +H++IH+  +P
Sbjct: 10 EKPYIC--AECGKAFTIRSNLIKHQKIHTKQKP 40



 Score = 28.9 bits (63), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTHFPQ 122
           +PY C  CGK F  + +L KH + H  Q
Sbjct: 11  KPYICAECGKAFTIRSNLIKHQKIHTKQ 38


>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From
          Human Zinc Finger Protein 224
          Length = 46

 Score = 32.3 bits (72), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          E+P+KC    CGK F+R   L  H ++H+G +P
Sbjct: 10 EKPFKCV--ECGKGFSRRSALNVHHKLHTGEKP 40



 Score = 29.6 bits (65), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K F C  C   FS    L  H ++HTGE+P
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKP 40



 Score = 26.6 bits (57), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           +P+ C  CGK F R+  L  H + H
Sbjct: 11  KPFKCVECGKGFSRRSALNVHHKLH 35


>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          463- 495) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 32.3 bits (72), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          E P+ C    CGK FT    L  H++IH+G RP
Sbjct: 10 ENPFICS--ECGKVFTHKTNLIIHQKIHTGERP 40



 Score = 28.9 bits (63), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 39 FNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          F C  C   F++   L  H +IHTGERP
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERP 40


>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
           Zinc Finger Protein
          Length = 28

 Score = 32.3 bits (72), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 94  LRPYPCTHCGKKFGRKDHLKKHLRTH 119
           +RPY C+ CGK+F  K  ++ H R H
Sbjct: 1   MRPYSCSVCGKRFSLKHQMETHYRVH 26



 Score = 28.9 bits (63), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)

Query: 65 RPYKCDAENCGKSFTRNEELTRHKRIHSG 93
          RPY C    CGK F+   ++  H R+H+G
Sbjct: 2  RPYSCSV--CGKRFSLKHQMETHYRVHTG 28


>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           495- 525) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 32.0 bits (71), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 13/26 (50%), Positives = 16/26 (61%)

Query: 94  LRPYPCTHCGKKFGRKDHLKKHLRTH 119
           ++PY C  CGK F  K +L  H RTH
Sbjct: 10  MKPYVCNECGKAFRSKSYLIIHTRTH 35



 Score = 25.8 bits (55), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)

Query: 65 RPYKCDAENCGKSFTRNEELTRHKRIHSG 93
          +PY C+   CGK+F     L  H R H+G
Sbjct: 11 KPYVCN--ECGKAFRSKSYLIIHTRTHTG 37


>pdb|1U86|A Chain A, 321-Tw-322 Insertion Mutant Of The Third Zinc Finger Of
          Bklf
          Length = 35

 Score = 32.0 bits (71), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 21/30 (70%)

Query: 62 TGERPYKCDAENCGKSFTRNEELTRHKRIH 91
          TG +P++C   +C +SF+R++ L  H++ H
Sbjct: 3  TGIKPFQCTWPDCDRSFSRSDHLALHRKRH 32



 Score = 28.9 bits (63), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 92  SGLRPYPCT--HCGKKFGRKDHLKKHLRTHF 120
           +G++P+ CT   C + F R DHL  H + H 
Sbjct: 3   TGIKPFQCTWPDCDRSFSRSDHLALHRKRHM 33


>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          339- 371) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 32.0 bits (71), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          E+PYKC  E CGK F    +L  H  +H+G +P
Sbjct: 10 EKPYKC--EECGKGFICRRDLYTHHMVHTGEKP 40


>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          607- 639) Of Human Zinc Finger Protein 268
          Length = 46

 Score = 31.6 bits (70), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 16/30 (53%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K F C  C  AF+    L  H R HTGE+P
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEKP 40



 Score = 28.5 bits (62), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          E+P++C    C K+F     L  H+R H+G +P
Sbjct: 10 EKPFECS--ECQKAFNTKSNLIVHQRTHTGEKP 40



 Score = 28.1 bits (61), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           +P+ C+ C K F  K +L  H RTH
Sbjct: 11  KPFECSECQKAFNTKSNLIVHQRTH 35


>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
          Length = 29

 Score = 31.2 bits (69), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 39 FNCPHCNVAFSNNGQLKGHIRIHTGER 65
            C  C   F+ +G LK H+RIH+GE+
Sbjct: 3  LKCRECGKQFTTSGNLKRHLRIHSGEK 29



 Score = 30.8 bits (68), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 16/28 (57%), Positives = 17/28 (60%), Gaps = 2/28 (7%)

Query: 66 PYKCDAENCGKSFTRNEELTRHKRIHSG 93
          P KC    CGK FT +  L RH RIHSG
Sbjct: 2  PLKC--RECGKQFTTSGNLKRHLRIHSG 27



 Score = 29.3 bits (64), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 96  PYPCTHCGKKFGRKDHLKKHLRTH 119
           P  C  CGK+F    +LK+HLR H
Sbjct: 2   PLKCRECGKQFTTSGNLKRHLRIH 25


>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          423- 455) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 31.2 bits (69), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSG 93
          E+PYKC    CGK + R  +L  H+R+H+G
Sbjct: 10 EKPYKC--VECGKGYKRRLDLDFHQRVHTG 37



 Score = 26.9 bits (58), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           +PY C  CGK + R+  L  H R H
Sbjct: 11  KPYKCVECGKGYKRRLDLDFHQRVH 35


>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
          Length = 37

 Score = 31.2 bits (69), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 92  SGLRPYPCTHCGKKFGRKDHLKKHLRTHF 120
           +G++P+ C  C + F R DHL  H + H 
Sbjct: 7   TGIKPFQCPDCDRSFSRSDHLALHRKRHM 35



 Score = 29.3 bits (64), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 2/36 (5%)

Query: 56 GHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIH 91
          G  R  TG +P++C   +C +SF+R++ L  H++ H
Sbjct: 1  GSTRGSTGIKPFQC--PDCDRSFSRSDHLALHRKRH 34


>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
          Zinc Finger Protein 406
          Length = 36

 Score = 31.2 bits (69), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGER 65
          K F C +CN  F     L+ H+RIHT E+
Sbjct: 8  KIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36


>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          284- 316) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 31.2 bits (69), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 2/32 (6%)

Query: 62 TGERPYKCDAENCGKSFTRNEELTRHKRIHSG 93
          T E+PYKC    CGK+F     LT H+ IH+G
Sbjct: 8  TKEKPYKC--YECGKAFRTRSNLTTHQVIHTG 37



 Score = 26.6 bits (57), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 17/38 (44%)

Query: 28 SMKAKNQRPKKFNCPHCNVAFSNNGQLKGHIRIHTGER 65
          S  +   + K + C  C  AF     L  H  IHTGE+
Sbjct: 2  SSGSSGTKEKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39



 Score = 25.8 bits (55), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTHFPQPR 124
           +PY C  CGK F  + +L  H   H  + R
Sbjct: 11  KPYKCYECGKAFRTRSNLTTHQVIHTGEKR 40


>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
          Zinc Finger Protein 268
          Length = 46

 Score = 31.2 bits (69), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)

Query: 65 RPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          +PY C    C K+F+   +L  H+R H+G++P
Sbjct: 11 KPYGCS--QCAKTFSLKSQLIVHQRSHTGVKP 40



 Score = 29.3 bits (64), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 94  LRPYPCTHCGKKFGRKDHLKKHLRTH 119
           ++PY C+ C K F  K  L  H R+H
Sbjct: 10  VKPYGCSQCAKTFSLKSQLIVHQRSH 35



 Score = 27.7 bits (60), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 15/30 (50%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K + C  C   FS   QL  H R HTG +P
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40


>pdb|1VA3|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
           Domain (Zinc Finger 3)
 pdb|1SP1|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
           Factor Sp1f3, Minimized Average Structure
          Length = 29

 Score = 31.2 bits (69), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 17/25 (68%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           + + C  C K+F R DHL KH++TH
Sbjct: 1   KKFACPECPKRFMRSDHLSKHIKTH 25



 Score = 26.6 bits (57), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGER 65
          KKF CP C   F  +  L  HI+ H  ++
Sbjct: 1  KKFACPECPKRFMRSDHLSKHIKTHQNKK 29


>pdb|2EJ4|A Chain A, Functional And Structural Basis Of Nuclear Localization
           Signal In Zic3 Zinc Finger Domain: A Role Of Conserved
           Tryptophan Residue In The Zinc Finger Domain
          Length = 95

 Score = 31.2 bits (69), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 17/101 (16%)

Query: 7   GGSLDPYWSNLALEYFKSHEQSMKAKNQRPKKFNCPHCNVAFSNNGQLKGHIRI-HTG-- 63
           G S  P    L+ ++        +A+  RPKK     C+  FS   +L  H+ + H G  
Sbjct: 4   GSSGQPIKQELSCKWID------EAQLSRPKK----SCDRTFSTMHELVTHVTMEHVGGP 53

Query: 64  -ERPYKCDAENC---GKSFTRNEELTRHKRIHSGLRPYPCT 100
            +  + C  E C   GKSF    +L  H R+H+G +  P +
Sbjct: 54  EQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSS 94


>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 268
          Length = 44

 Score = 30.8 bits (68), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGL 94
          E+PY+C+   CGK+F     L  H+R H+G+
Sbjct: 10 EKPYECN--ECGKAFIWKSLLIVHERTHAGV 38



 Score = 29.3 bits (64), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 13/25 (52%), Positives = 14/25 (56%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           +PY C  CGK F  K  L  H RTH
Sbjct: 11  KPYECNECGKAFIWKSLLIVHERTH 35


>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           626- 654) Of Human B-Cell Lymphoma 6 Protein
          Length = 42

 Score = 30.8 bits (68), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 13/25 (52%), Positives = 15/25 (60%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           +PYPC  CG +F     LK HLR H
Sbjct: 10  KPYPCEICGTRFRHLQTLKSHLRIH 34



 Score = 28.1 bits (61), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          E+PY C  E CG  F   + L  H RIH+G  P
Sbjct: 9  EKPYPC--EICGTRFRHLQTLKSHLRIHTGSGP 39



 Score = 28.1 bits (61), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K + C  C   F +   LK H+RIHTG  P
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39


>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          598- 626) Of Human B-Cell Lymphoma 6 Protein
          Length = 42

 Score = 30.8 bits (68), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          E+PYKC  E CG  F +   L  H  IH+G  P
Sbjct: 9  EKPYKC--ETCGARFVQVAHLRAHVLIHTGSGP 39



 Score = 28.1 bits (61), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           +PY C  CG +F +  HL+ H+  H
Sbjct: 10  KPYKCETCGARFVQVAHLRAHVLIH 34



 Score = 28.1 bits (61), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K + C  C   F     L+ H+ IHTG  P
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTGSGP 39


>pdb|2M0E|A Chain A, Solution Structure Of Miz-1 Zinc Finger 6
          Length = 29

 Score = 30.4 bits (67), Expect = 0.33,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGE 64
          K+  CPHC+  F+  G LK H++IH  +
Sbjct: 1  KEHKCPHCDKKFNQVGNLKAHLKIHIAD 28



 Score = 26.6 bits (57), Expect = 4.7,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           + + C HC KKF +  +LK HL+ H
Sbjct: 1   KEHKCPHCDKKFNQVGNLKAHLKIH 25


>pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8
           Specific Inhibitor
          Length = 396

 Score = 30.4 bits (67), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 10/68 (14%)

Query: 68  KCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTHFPQPRYVS 127
           KC  ++C + F++ E+LT + R +       C+HC     R+D LKK      P    V 
Sbjct: 247 KCTLQDCLRLFSKEEKLTDNNRFY-------CSHCR---ARRDSLKKIEIWKLPPVLLVH 296

Query: 128 CYPYMYGG 135
              + Y G
Sbjct: 297 LKRFSYDG 304


>pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin
           Carboxyl-terminal Hydrolase 8
          Length = 396

 Score = 30.4 bits (67), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 10/68 (14%)

Query: 68  KCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTHFPQPRYVS 127
           KC  ++C + F++ E+LT + R +       C+HC     R+D LKK      P    V 
Sbjct: 247 KCTLQDCLRLFSKEEKLTDNNRFY-------CSHCR---ARRDSLKKIEIWKLPPVLLVH 296

Query: 128 CYPYMYGG 135
              + Y G
Sbjct: 297 LKRFSYDG 304


>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
          Zinc Finger Protein 224
          Length = 46

 Score = 30.0 bits (66), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K + C  C++ FS    L+ H  +H GE+P
Sbjct: 11 KTWKCRECDMCFSQASSLRLHQNVHVGEKP 40


>pdb|1U85|A Chain A, Arg326-Trp Mutant Of The Third Zinc Finger Of Bklf
          Length = 33

 Score = 30.0 bits (66), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 92  SGLRPYPCTHCGKKFGRKDHLKKHLRTHF 120
           +G++P+ C  C   F R DHL  H + H 
Sbjct: 3   TGIKPFQCPDCDWSFSRSDHLALHRKRHM 31



 Score = 26.9 bits (58), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 2/30 (6%)

Query: 62 TGERPYKCDAENCGKSFTRNEELTRHKRIH 91
          TG +P++C   +C  SF+R++ L  H++ H
Sbjct: 3  TGIKPFQC--PDCDWSFSRSDHLALHRKRH 30


>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          724- 756) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 30.0 bits (66), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          +RPY+C    CGK+F     L  H+R H+G +P
Sbjct: 10 QRPYECI--ECGKAFKTKSSLICHRRSHTGEKP 40



 Score = 29.3 bits (64), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 2/33 (6%)

Query: 34 QRPKKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          QRP  + C  C  AF     L  H R HTGE+P
Sbjct: 10 QRP--YECIECGKAFKTKSSLICHRRSHTGEKP 40



 Score = 28.9 bits (63), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 13/25 (52%), Positives = 14/25 (56%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           RPY C  CGK F  K  L  H R+H
Sbjct: 11  RPYECIECGKAFKTKSSLICHRRSH 35


>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
           Of Zinc Finger Protein 692
          Length = 78

 Score = 30.0 bits (66), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 5/54 (9%)

Query: 72  ENCGKSFTRNEELTRHKRIHS----GLRPYPCTHCGKKFGRKDHLKKHLRTHFP 121
           E CG +  +   L  H+R H+     LR +PC  CGK+F + D +  H     P
Sbjct: 11  EICGFTCRQKASLNWHQRKHAETVAALR-FPCEFCGKRFEKPDSVAAHRSKSHP 63


>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          341- 373) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 30.0 bits (66), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          ER ++C   +CGK F +     +H+RIH+G +P
Sbjct: 10 ERGHRCS--DCGKFFLQASNFIQHRRIHTGEKP 40


>pdb|2EOX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          315- 345) Of Human Zinc Finger Protein 473
          Length = 44

 Score = 29.6 bits (65), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 2/26 (7%)

Query: 67 YKCDAENCGKSFTRNEELTRHKRIHS 92
          Y C+   CGK+FTR   LTRH++IH+
Sbjct: 13 YNCN--ECGKAFTRIFHLTRHQKIHT 36



 Score = 26.2 bits (56), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 97  YPCTHCGKKFGRKDHLKKHLRTH 119
           Y C  CGK F R  HL +H + H
Sbjct: 13  YNCNECGKAFTRIFHLTRHQKIH 35


>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
           Implications For Dna Binding
          Length = 29

 Score = 29.6 bits (65), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 96  PYPCTHCGKKFGRKDHLKKHLRTH 119
            + C  C + F R++HLK+H R+H
Sbjct: 2   SFVCEVCTRAFARQEHLKRHYRSH 25



 Score = 26.2 bits (56), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 14/27 (51%)

Query: 39 FNCPHCNVAFSNNGQLKGHIRIHTGER 65
          F C  C  AF+    LK H R HT E+
Sbjct: 3  FVCEVCTRAFARQEHLKRHYRSHTNEK 29


>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 28 Homolog
          Length = 47

 Score = 29.6 bits (65), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 3/34 (8%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKR-IHSGLRP 96
          ++PY+C    CGK+F +N  L RH R  H+G +P
Sbjct: 10 KKPYECI--ECGKAFIQNTSLIRHWRYYHTGEKP 41



 Score = 25.8 bits (55), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLR 117
           +PY C  CGK F +   L +H R
Sbjct: 11  KPYECIECGKAFIQNTSLIRHWR 33


>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          780- 812) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 29.3 bits (64), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 15/29 (51%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGER 65
          K + C  C   F   G L  H R+HTGER
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGER 39



 Score = 28.5 bits (62), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 2/32 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLR 95
          ++PY+C  + C K+F +   L +HKR+H+G R
Sbjct: 10 KKPYEC--KECRKTFIQIGHLNQHKRVHTGER 39



 Score = 26.2 bits (56), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           +PY C  C K F +  HL +H R H
Sbjct: 11  KPYECKECRKTFIQIGHLNQHKRVH 35


>pdb|2WBT|A Chain A, The Structure Of A Double C2h2 Zinc Finger Protein From A
           Hyperthermophilic Archaeal Virus In The Absence Of Dna
 pdb|2WBT|B Chain B, The Structure Of A Double C2h2 Zinc Finger Protein From A
           Hyperthermophilic Archaeal Virus In The Absence Of Dna
          Length = 129

 Score = 29.3 bits (64), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 8/52 (15%)

Query: 38  KFNCPHCNVAFSNNGQLKGHIRI--HTGERPYKCDAENCGKSFTRNEELTRH 87
           +F CP C + FS++  LK HIR   HT   P       C K FT  +    H
Sbjct: 74  QFVCPLCLMPFSSSVSLKQHIRYTEHTKVCPV------CKKEFTSTDSALDH 119


>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
           From Human Insulinoma-Associated Protein 1 (Fragment
           424-497), Northeast Structural Genomics Consortium
           Target Hr7614b
          Length = 85

 Score = 29.3 bits (64), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 2/73 (2%)

Query: 50  NNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTHCGKKFGRK 109
            +G+  G + +      + C    CG+SF       RH R+    + +PC +C   F   
Sbjct: 12  GDGEGAGVLGLSASAECHLCPV--CGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSS 69

Query: 110 DHLKKHLRTHFPQ 122
             L +H+    P 
Sbjct: 70  PGLTRHINKCHPS 82



 Score = 27.3 bits (59), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 41 CPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRH 87
          CP C  +F++ G  + H+R+    + + C  + C  +F  +  LTRH
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPC--KYCPATFYSSPGLTRH 75


>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           411- 441) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 29.3 bits (64), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 14/25 (56%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           +PY C  C K F  K +L  H RTH
Sbjct: 11  KPYECNECQKAFNTKSNLMVHQRTH 35



 Score = 27.7 bits (60), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSG 93
          E+PY+C+   C K+F     L  H+R H+G
Sbjct: 10 EKPYECNE--CQKAFNTKSNLMVHQRTHTG 37



 Score = 26.6 bits (57), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 14/28 (50%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGE 64
          K + C  C  AF+    L  H R HTGE
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTGE 38


>pdb|2LVU|A Chain A, Solution Structure Of Miz-1 Zinc Finger 10
          Length = 26

 Score = 29.3 bits (64), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           +PY C  CGK+F +   L  H+R H
Sbjct: 1   KPYVCERCGKRFVQSSQLANHIRHH 25


>pdb|2KFQ|A Chain A, Nmr Structure Of Fp1
          Length = 32

 Score = 29.3 bits (64), Expect = 0.80,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 97  YPCTHCGKKFGRKDHLKKHLRTHF 120
           + C  C K+F R D L KH++T F
Sbjct: 3   FACPACPKRFMRSDALSKHIKTAF 26


>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          329- 359) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 29.3 bits (64), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 16/30 (53%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K   C  C   FS + QL  H RIHTGE P
Sbjct: 9  KLHECSECRKTFSFHSQLVIHQRIHTGENP 38



 Score = 28.5 bits (62), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 2/35 (5%)

Query: 62 TGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          +GE+ ++C    C K+F+ + +L  H+RIH+G  P
Sbjct: 6  SGEKLHECS--ECRKTFSFHSQLVIHQRIHTGENP 38


>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          768- 800) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 29.3 bits (64), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 74 CGKSFTRNEELTRHKRIHSGLRP 96
          CG+ FT    L +H+RIH+G +P
Sbjct: 18 CGRGFTLKSHLNQHQRIHTGEKP 40



 Score = 28.1 bits (61), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 15/30 (50%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          K   C  C   F+    L  H RIHTGE+P
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40


>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
          Zinc Finger Protein 406
          Length = 36

 Score = 28.9 bits (63), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGER 65
          K + CP C+ A +    L  H+R HTGE+
Sbjct: 8  KPYKCPQCSYASAIKANLNVHLRKHTGEK 36


>pdb|1BHI|A Chain A, Structure Of Transactivation Domain Of Cre-Bp1ATF-2,
          Nmr, 20 Structures
          Length = 38

 Score = 28.9 bits (63), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 62 TGERPYKCDAENCGKSFTRNEELTRHKRIHS 92
          + ++P+ C A  CG+ FT  + L  HK  H 
Sbjct: 2  SDDKPFLCTAPGCGQRFTNEDHLAVHKHKHE 32


>pdb|1ZNM|A Chain A, A Zinc Finger With An Artificial Beta-Turn, Original
          Sequence Taken From The Third Zinc Finger Domain Of The
          Human Transcriptional Repressor Protein Yy1 (Ying And
          Yang 1, A Delta Transcription Factor), Nmr, 34
          Structures
          Length = 28

 Score = 28.9 bits (63), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 66 PYKCDAENCGKSFTRNEELTRHKRIHSG 93
          P++C    CGK F+ +  L  H +IH+G
Sbjct: 1  PFQCTFXCCGKRFSLDFNLKTHVKIHTG 28


>pdb|1RIM|A Chain A, E6-Binding Zinc Finger (E6apc2)
          Length = 33

 Score = 28.5 bits (62), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 97  YPCTHCGKKFGRKDHLKKHLRTH 119
           + C  C K+F R DHL KH+  H
Sbjct: 3   FACPECPKRFMRSDHLSKHITLH 25


>pdb|2EPW|A Chain A, Solution Structure Of The 24th C2h2 Type Zinc Finger
           Domain Of Zinc Finger Protein 268
          Length = 46

 Score = 28.5 bits (62), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 13/26 (50%), Positives = 14/26 (53%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTHF 120
           +P  CT CGK F  K  L  H RTH 
Sbjct: 11  KPCKCTECGKAFCWKSQLIMHQRTHV 36



 Score = 25.8 bits (55), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIH 91
          E+P KC    CGK+F    +L  H+R H
Sbjct: 10 EKPCKC--TECGKAFCWKSQLIMHQRTH 35


>pdb|1ARF|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
           Implications For Dna Binding
          Length = 29

 Score = 28.1 bits (61), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 9/24 (37%), Positives = 16/24 (66%)

Query: 96  PYPCTHCGKKFGRKDHLKKHLRTH 119
            + C  C + F R+++LK+H R+H
Sbjct: 2   SFVCEVCTRAFARQEYLKRHYRSH 25



 Score = 26.2 bits (56), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 14/27 (51%)

Query: 39 FNCPHCNVAFSNNGQLKGHIRIHTGER 65
          F C  C  AF+    LK H R HT E+
Sbjct: 3  FVCEVCTRAFARQEYLKRHYRSHTNEK 29


>pdb|3UIU|A Chain A, Crystal Structure Of Apo-Pkr Kinase Domain
 pdb|3UIU|B Chain B, Crystal Structure Of Apo-Pkr Kinase Domain
          Length = 306

 Score = 28.1 bits (61), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 3/91 (3%)

Query: 7   GGSLDPYWSNLALEYFKSHEQSMKAKNQRPKKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
           G   DP  S+ +LE   S      +KN    K  C    + F + G L+  I    GE+ 
Sbjct: 76  GFDYDPETSDDSLE--SSDYDPENSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKL 133

Query: 67  YKCDAENCGKSFTRNEELTRHKR-IHSGLRP 96
            K  A    +  T+  +    K+ IH  L+P
Sbjct: 134 DKVLALELFEQITKGVDYIHSKKLIHRDLKP 164


>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           273- 303) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 27.7 bits (60), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 92  SGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
           SG +P+ C+ C K F  K +L  H +TH
Sbjct: 6   SGEKPFGCSCCEKAFSSKSYLLVHQQTH 33


>pdb|2M0D|A Chain A, Solution Structure Of Miz-1 Zinc Finger 5
          Length = 30

 Score = 27.7 bits (60), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 94  LRPYPCTHCGKKFGRKDHLKKHLRTH 119
           ++PY C +CG+ F       +HL TH
Sbjct: 1   MKPYQCDYCGRSFSDPTSKMRHLETH 26


>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
          Zinc Finger Protein 278
          Length = 48

 Score = 27.3 bits (59), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 14/26 (53%), Positives = 15/26 (57%)

Query: 72 ENCGKSFTRNEELTRHKRIHSGLRPY 97
          E CGK F     L RHK  HSG +PY
Sbjct: 16 EICGKIFRDVYHLNRHKLSHSGEKPY 41


>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           204- 236) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 27.3 bits (59), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           +PY C+ CGK F     L +H  TH
Sbjct: 11  KPYQCSECGKSFSGSYRLTQHWITH 35



 Score = 26.9 bits (58), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)

Query: 65 RPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          +PY+C    CGKSF+ +  LT+H   H+  +P
Sbjct: 11 KPYQCS--ECGKSFSGSYRLTQHWITHTREKP 40


>pdb|2WAQ|A Chain A, The Complete Structure Of The Archaeal 13-Subunit Dna-
           Directed Rna Polymerase
 pdb|2WB1|A Chain A, The Complete Structure Of The Archaeal 13-Subunit Dna-
           Directed Rna Polymerase
 pdb|2WB1|W Chain W, The Complete Structure Of The Archaeal 13-Subunit Dna-
           Directed Rna Polymerase
 pdb|2Y0S|A Chain A, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
           P21 Space Group
 pdb|2Y0S|W Chain W, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
           P21 Space Group
 pdb|4AYB|A Chain A, Rnap At 3.2ang
 pdb|4B1O|A Chain A, Archaeal Rnap-Dna Binary Complex At 4.32ang
 pdb|4B1P|W Chain W, Archaeal Rnap-Dna Binary Complex At 4.32ang
          Length = 880

 Score = 26.9 bits (58), Expect = 3.4,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 34/95 (35%), Gaps = 30/95 (31%)

Query: 41  CPHCNVAFSNNGQLKGHIR-----IHTGERPY-----KCDAENCGKSFTRNEELTRHKRI 90
           CP C     N     GHI      IH G   +     K     CG+     +E+ ++ RI
Sbjct: 58  CPTCGNTLGNCPGHFGHIELVRPVIHVGFVKHVYEFLKATCRRCGRVKISEDEIEKYSRI 117

Query: 91  HSGLRP-YP-------------------CTHCGKK 105
           ++ ++  +P                   C HCG+K
Sbjct: 118 YNAIKKRWPSAARRLTEYVKKTAMKAQVCPHCGEK 152


>pdb|2YU5|A Chain A, Solution Structure Of The Zf-C2h2 Domain (669-699aa) In
           Zinc Finger Protein 473
          Length = 44

 Score = 26.9 bits (58), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 9/24 (37%), Positives = 17/24 (70%)

Query: 96  PYPCTHCGKKFGRKDHLKKHLRTH 119
           P+ C+ C + F ++++L +H RTH
Sbjct: 12  PFKCSKCDRVFTQRNYLVQHERTH 35


>pdb|2EN3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           796- 828) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 26.6 bits (57), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRTH 119
           +P+ C  CG  F     L KHLR+H
Sbjct: 11  KPFQCKECGMNFSWSCSLFKHLRSH 35


>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
           Human Zinc Finger Protein 64, Isoforms 1 And 2
          Length = 70

 Score = 26.6 bits (57), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 84  LTRHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLR 117
           L  H+RIH   RP+ C +C     +  +L KH++
Sbjct: 25  LRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58


>pdb|2EOY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          557- 589) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 26.6 bits (57), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 26/36 (72%), Gaps = 3/36 (8%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHS-GLRPYP 98
          E+ +KC+   C K+F+ ++ LT+H+RIH+ G++  P
Sbjct: 10 EKCFKCN--KCEKTFSCSKYLTQHERIHTRGVKSGP 43



 Score = 25.8 bits (55), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 17/35 (48%)

Query: 28 SMKAKNQRPKKFNCPHCNVAFSNNGQLKGHIRIHT 62
          S  +  Q+ K F C  C   FS +  L  H RIHT
Sbjct: 2  SSGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36


>pdb|3I16|A Chain A, Crystal Structure Of Carbon-Sulfur Lyase Involved In
           Aluminum Resistance (Yp_878183.1) From Clostridium Novyi
           Nt At 2.00 A Resolution
 pdb|3I16|B Chain B, Crystal Structure Of Carbon-Sulfur Lyase Involved In
           Aluminum Resistance (Yp_878183.1) From Clostridium Novyi
           Nt At 2.00 A Resolution
 pdb|3I16|C Chain C, Crystal Structure Of Carbon-Sulfur Lyase Involved In
           Aluminum Resistance (Yp_878183.1) From Clostridium Novyi
           Nt At 2.00 A Resolution
 pdb|3I16|D Chain D, Crystal Structure Of Carbon-Sulfur Lyase Involved In
           Aluminum Resistance (Yp_878183.1) From Clostridium Novyi
           Nt At 2.00 A Resolution
          Length = 427

 Score = 26.6 bits (57), Expect = 4.8,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)

Query: 105 KFGRKDHLK---KHLRTHFPQPRYVSCYPYMYGGYTSVIL 141
           KF  KD L    K ++T  P   +VSC P+   GYT  ++
Sbjct: 338 KFNDKDKLIEFCKGIQTGSPIDSFVSCEPWDXPGYTDQVI 377


>pdb|3GWP|A Chain A, Crystal Structure Of Carbon-Sulfur Lyase Involved In
           Aluminum Resistance (Yp_878183.1) From Clostridium Novyi
           Nt At 2.90 A Resolution
 pdb|3GWP|B Chain B, Crystal Structure Of Carbon-Sulfur Lyase Involved In
           Aluminum Resistance (Yp_878183.1) From Clostridium Novyi
           Nt At 2.90 A Resolution
 pdb|3GWP|C Chain C, Crystal Structure Of Carbon-Sulfur Lyase Involved In
           Aluminum Resistance (Yp_878183.1) From Clostridium Novyi
           Nt At 2.90 A Resolution
 pdb|3GWP|D Chain D, Crystal Structure Of Carbon-Sulfur Lyase Involved In
           Aluminum Resistance (Yp_878183.1) From Clostridium Novyi
           Nt At 2.90 A Resolution
          Length = 427

 Score = 26.6 bits (57), Expect = 4.8,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)

Query: 105 KFGRKDHLK---KHLRTHFPQPRYVSCYPYMYGGYTSVIL 141
           KF  KD L    K ++T  P   +VSC P+   GYT  ++
Sbjct: 338 KFNDKDKLIEFCKGIQTGSPIDSFVSCEPWDXPGYTDQVI 377


>pdb|2EPC|A Chain A, Solution Structure Of Zinc Finger Domain 7 In Zinc
          Finger Protein 32
          Length = 42

 Score = 26.6 bits (57), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)

Query: 64 ERPYKCDAENCGKSFTRNEELTRHKR 89
          E PY C    CGKSFT+   L  H+R
Sbjct: 9  ETPYLCG--QCGKSFTQRGSLAVHQR 32



 Score = 25.8 bits (55), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 96  PYPCTHCGKKFGRKDHLKKHLRT 118
           PY C  CGK F ++  L  H R+
Sbjct: 11  PYLCGQCGKSFTQRGSLAVHQRS 33


>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
          Zinc Finger Protein 268
          Length = 46

 Score = 26.6 bits (57), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 39 FNCPHCNVAFSNNGQLKGHIRIHTGERP 66
          + C  C  +FS   +L  H R+HT E+P
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQRMHTREKP 40



 Score = 25.8 bits (55), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 66 PYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
          PYKC    C KSF+    L  H+R+H+  +P
Sbjct: 12 PYKCS--QCEKSFSGKLRLLVHQRMHTREKP 40


>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
          Length = 29

 Score = 26.2 bits (56), Expect = 6.4,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGER 65
          K   C  C  AF+    L  H+R HTGE+
Sbjct: 1  KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29


>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          484- 512) Of Human Zinc Finger Protein 473
          Length = 42

 Score = 25.8 bits (55), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHT 62
          K ++C  C   FS+N +L  H ++HT
Sbjct: 9  KPYSCAECKETFSDNNRLVQHQKMHT 34


>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
           Protein Zfy: 2d Nmr Structure Of An Even Finger And
           Implications For "jumping-Linker" Dna Recognition
          Length = 30

 Score = 25.8 bits (55), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 95  RPYPCTHCGKKFGRKDHLKKHLRT 118
           + Y C +C K+F    +LK H++T
Sbjct: 1   KTYQCQYCEKRFADSSNLKTHIKT 24


>pdb|1RIK|A Chain A, E6-Binding Zinc Finger (E6apc1)
          Length = 29

 Score = 25.8 bits (55), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 97  YPCTHCGKKFGRKDHLKKHLRTH 119
           + C  C K+F R DHL  H+  H
Sbjct: 3   FACPECPKRFMRSDHLTLHILLH 25


>pdb|1FV5|A Chain A, Solution Structure Of The First Zinc Finger From The
          Drosophila U-Shaped Transcription Factor
 pdb|1Y0J|B Chain B, Zinc Fingers As Protein Recognition Motifs: Structural
          Basis For The Gata-1FRIEND OF GATA INTERACTION
 pdb|2L6Z|B Chain B, Haddock Model Of Gata1nf:lmo2lim2-Ldb1lid With Fog
          Length = 36

 Score = 25.8 bits (55), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 35 RPKKFNCPHCNVAFSNNGQLKGH 57
          +P +F C  C +AFS+   L+ H
Sbjct: 5  KPARFMCLPCGIAFSSPSTLEAH 27


>pdb|1VA1|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
           Domain (Zinc Finger 1)
          Length = 37

 Score = 25.8 bits (55), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 10/18 (55%), Positives = 13/18 (72%)

Query: 102 CGKKFGRKDHLKKHLRTH 119
           CGK +G+  HL+ HLR H
Sbjct: 16  CGKVYGKTSHLRAHLRWH 33


>pdb|4DQN|A Chain A, Crystal Structure Of The Branched-Chain Aminotransferase
          From Streptococcus Mutans
          Length = 345

 Score = 25.4 bits (54), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query: 5  PLGGSLDPYWSNLALEYFK 23
          PLG ++D  W NL  EY K
Sbjct: 2  PLGSTVDLDWKNLGFEYHK 20


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.139    0.469 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,884,996
Number of Sequences: 62578
Number of extensions: 192889
Number of successful extensions: 1042
Number of sequences better than 100.0: 209
Number of HSP's better than 100.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 327
Number of HSP's gapped (non-prelim): 580
length of query: 141
length of database: 14,973,337
effective HSP length: 89
effective length of query: 52
effective length of database: 9,403,895
effective search space: 489002540
effective search space used: 489002540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)