RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17779
(141 letters)
>gnl|CDD|227381 COG5048, COG5048, FOG: Zn-finger [General function prediction
only].
Length = 467
Score = 44.3 bits (104), Expect = 6e-06
Identities = 28/69 (40%), Positives = 42/69 (60%)
Query: 24 SHEQSMKAKNQRPKKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEE 83
+ + ++K+ + P+ +CP+C +FS L HIR HTGE+P +C C KSF+R E
Sbjct: 19 TPKSTLKSLSNAPRPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLE 78
Query: 84 LTRHKRIHS 92
L+RH R H
Sbjct: 79 LSRHLRTHH 87
Score = 42.4 bits (99), Expect = 3e-05
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIR--IHTGE--RPYKCDAENCGKSFTRNEELTRHKRIHS 92
CN++FS + L H+R H+GE +P+ C CGK F+RN+ L RH +H+
Sbjct: 288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHT 347
Query: 93 GLRPYPC--THCGKKFGRKDHLKKHLRTHF 120
+ P + KF + +
Sbjct: 348 SISPAKEKLLNSSSKFSPLLNNEPPQSLQQ 377
Score = 38.5 bits (89), Expect = 5e-04
Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 65 RPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTH--CGKKFGRKDHLKKHLRTHFPQ 122
RP C NC SF+R E LTRH R H+G +P C++ C K F R L +HLRTH
Sbjct: 32 RPDSCP--NCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTHHNN 89
Query: 123 PRYVSCYP 130
P ++
Sbjct: 90 PSDLNSKS 97
Score = 32.7 bits (74), Expect = 0.043
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 67 YKCDAENCGKSFTRNEELTRHKR--IHSG--LRPYPCTH--CGKKFGRKDHLKKHLRTHF 120
++ C SF+R+ LTRH R HSG L+P+ C + CGK F R D LK+H+ H
Sbjct: 288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHT 347
Query: 121 PQPRY 125
Sbjct: 348 SISPA 352
Score = 27.7 bits (61), Expect = 2.5
Identities = 26/74 (35%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Query: 44 CNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTHCG 103
C F + L HI H RPY C C KSF R+ L HK+IH+ P
Sbjct: 394 CIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTNHAPL-LCSIL 452
Query: 104 KKFGRKDHLKKHLR 117
K F R L H +
Sbjct: 453 KSFRRDLDLSNHGK 466
>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M
transition [Transcription / Cell division and chromosome
partitioning].
Length = 423
Score = 39.7 bits (92), Expect = 2e-04
Identities = 21/99 (21%), Positives = 32/99 (32%), Gaps = 24/99 (24%)
Query: 45 NVAFSNNGQL----KGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKR----------- 89
N ++ G+ + +PYKC E C K + L H
Sbjct: 324 NGKLAHGGERNIDTPSRMLKVKDGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHEN 383
Query: 90 --------IHSGLRPYPCTHCGKKFGRKDHLKKHLRTHF 120
+ +PY C C K++ + LK H R H
Sbjct: 384 PSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYH-RKHS 421
>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain.
Length = 26
Score = 35.1 bits (81), Expect = 6e-04
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 83 ELTRHKRIHSGLRPYPCTHCGKKFGR 108
L RH R H+G +PY C CGK F
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 33.5 bits (77), Expect = 0.002
Identities = 16/27 (59%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
Query: 54 LKGHIRIHTGERPYKCDAENCGKSFTR 80
L+ H+R HTGE+PYKC CGKSF+
Sbjct: 2 LRRHMRTHTGEKPYKCP--VCGKSFSS 26
>gnl|CDD|200998 pfam00096, zf-C2H2, Zinc finger, C2H2 type. The C2H2 zinc finger
is the classical zinc finger domain. The two conserved
cysteines and histidines co-ordinate a zinc ion. The
following pattern describes the zinc finger.
#-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can
be any amino acid, and numbers in brackets indicate the
number of residues. The positions marked # are those
that are important for the stable fold of the zinc
finger. The final position can be either his or cys. The
C2H2 zinc finger is composed of two short beta strands
followed by an alpha helix. The amino terminal part of
the helix binds the major groove in DNA binding zinc
fingers. The accepted consensus binding sequence for Sp1
is usually defined by the asymmetric hexanucleotide core
GGGCGG but this sequence does not include, among others,
the GAG (=CTC) repeat that constitutes a high-affinity
site for Sp1 binding to the wt1 promoter.
Length = 22
Score = 32.7 bits (75), Expect = 0.004
Identities = 14/21 (66%), Positives = 16/21 (76%)
Query: 99 CTHCGKKFGRKDHLKKHLRTH 119
C CGK F RK +LK+HLRTH
Sbjct: 2 CPDCGKSFSRKSNLKRHLRTH 22
Score = 28.5 bits (64), Expect = 0.17
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 72 ENCGKSFTRNEELTRHKRIH 91
+CGKSF+R L RH R H
Sbjct: 3 PDCGKSFSRKSNLKRHLRTH 22
Score = 26.9 bits (60), Expect = 0.59
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 41 CPHCNVAFSNNGQLKGHIRIH 61
CP C +FS LK H+R H
Sbjct: 2 CPDCGKSFSRKSNLKRHLRTH 22
>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger.
Length = 23
Score = 32.1 bits (73), Expect = 0.008
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 97 YPCTHCGKKFGRKDHLKKHLRTH 119
Y C CGK F K L++H+RTH
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 26.7 bits (59), Expect = 0.62
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 39 FNCPHCNVAFSNNGQLKGHIRIH 61
+ CP C F + L+ H+R H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 25.9 bits (57), Expect = 1.2
Identities = 10/25 (40%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 67 YKCDAENCGKSFTRNEELTRHKRIH 91
Y+C CGK F L H R H
Sbjct: 1 YRC--PECGKVFKSKSALREHMRTH 23
>gnl|CDD|206065 pfam13894, zf-C2H2_4, C2H2-type zinc finger. This family contains
a number of divergent C2H2 type zinc fingers.
Length = 24
Score = 30.3 bits (68), Expect = 0.034
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 97 YPCTHCGKKFGRKDHLKKHLRTH 119
+ C CGK F KD LK+HLR H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 25.7 bits (56), Expect = 1.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 39 FNCPHCNVAFSNNGQLKGHIRIH 61
F CP C +FS+ LK H+R H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
>gnl|CDD|177301 PHA00733, PHA00733, hypothetical protein.
Length = 128
Score = 31.4 bits (71), Expect = 0.080
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
Query: 39 FNCPHCNVAFSNNGQLKGHIRI--HTGERPYKCDAENCGKSFTRNEELTRH 87
+ CP C + FS++ LK HIR H+ P CGK F + H
Sbjct: 74 YVCPLCLMPFSSSVSLKQHIRYTEHSKVCPV------CGKEFRNTDSTLDH 118
>gnl|CDD|227293 COG4957, COG4957, Predicted transcriptional regulator
[Transcription].
Length = 148
Score = 30.0 bits (68), Expect = 0.25
Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 3/22 (13%)
Query: 99 CTHCGKKFGRKDHLKKHLRTHF 120
C GKKF LK+HL TH+
Sbjct: 79 CLEDGKKF---KSLKRHLTTHY 97
>gnl|CDD|212564 cd11674, lambda-1, inner capsid protein lambda-1 or VP3. The
reovirus inner capsid protein lambda-1 displays
nucleoside triphosphate phosphohydrolase (NTPase),
RNA-5'-triphosphatase (RTPase), and RNA helicase
activity and may play a role in the transcription of
the virus genome, the unwinding or reannealing of
double-stranded RNA during RNA synthesis. The RTPase
activity constitutes the first step in the capping of
RNA, resulting in a 5'-diphosphorylated RNA
plus-strand. lambda1 is an Orthoreovirus core protein,
VP3 is the homologous core protein in Aquareoviruses.
Length = 1166
Score = 30.1 bits (68), Expect = 0.42
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 27 QSMKAKNQRPKKFNCPHCNVAFSNNGQLKGHIR 59
QS KA P + C C FS+ QL H R
Sbjct: 62 QSKKATPINPSSYVCNVCMAEFSSMDQLAEHQR 94
>gnl|CDD|203053 pfam04606, Ogr_Delta, Ogr/Delta-like zinc finger. This is a
viral family of phage zinc-binding transcriptional
activators, which also contains cryptic members in some
bacterial genomes. The P4 phage delta protein contains
two such domains attached covalently, while the P2
phage Ogr proteins possess one domain but function as
dimers. All the members of this family have the
following consensus sequence:
C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F. This
family also includes zinc fingers in recombinase
proteins.
Length = 47
Score = 27.2 bits (61), Expect = 0.53
Identities = 14/53 (26%), Positives = 17/53 (32%), Gaps = 14/53 (26%)
Query: 40 NCPHCNVAFSNNGQLKGHIR------IHTGERPYKCDAENCGKSFTRNEELTR 86
CPHC K IR E Y+C CG +F N +
Sbjct: 1 RCPHCGA--------KARIRTSRRLSALVRELYYQCTNPECGHTFVTNLSFSH 45
>gnl|CDD|137468 PRK09678, PRK09678, DNA-binding transcriptional regulator;
Provisional.
Length = 72
Score = 27.7 bits (61), Expect = 0.79
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 39 FNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTR 86
F+CP C + + + +I T ER ++C NC +F E + R
Sbjct: 2 FHCPLCQ--HAAHARTSRYITDTTKERYHQCQNVNCSATFITYESVQR 47
>gnl|CDD|218591 pfam05443, ROS_MUCR, ROS/MUCR transcriptional regulator protein.
This family consists of several ROS/MUCR transcriptional
regulator proteins. The ros chromosomal gene is present
in octopine and nopaline strains of Agrobacterium
tumefaciens as well as in Rhizobium meliloti. This gene
encodes a 15.5-kDa protein that specifically represses
the virC and virD operons in the virulence region of the
Ti plasmid and is necessary for succinoglycan
production. Sinorhizobium meliloti can produce two types
of acidic exopolysaccharides, succinoglycan and
galactoglucan, that are interchangeable for infection of
alfalfa nodules. MucR from Sinorhizobium meliloti acts
as a transcriptional repressor that blocks the
expression of the exp genes responsible for
galactoglucan production therefore allowing the
exclusive production of succinoglycan.
Length = 130
Score = 28.3 bits (64), Expect = 0.88
Identities = 13/22 (59%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Query: 99 CTHCGKKFGRKDHLKKHLRTHF 120
C GKKF K LK+HLRTH
Sbjct: 73 CLEDGKKF--KT-LKRHLRTHH 91
>gnl|CDD|204841 pfam12171, zf-C2H2_jaz, Zinc-finger double-stranded RNA-binding.
This domain family is found in archaea and eukaryotes,
and is approximately 30 amino acids in length. The
mammalian members of this group occur multiple times
along the protein, joined by flexible linkers, and are
referred to as JAZ - dsRNA-binding ZF protein -
zinc-fingers. The JAZ proteins are expressed in all
tissues tested and localise in the nucleus,
particularly the nucleolus. JAZ preferentially binds to
double-stranded (ds) RNA or RNA/DNA hybrids rather than
DNA. In addition to binding double-stranded RNA, these
zinc-fingers are required for nucleolar localisation.
Length = 27
Score = 26.0 bits (58), Expect = 0.99
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 38 KFNCPHCNVAFSNNGQLKGHIR 59
+F C C+ F + L+ H++
Sbjct: 1 QFYCVACDKYFKSENALENHLK 22
>gnl|CDD|218451 pfam05129, Elf1, Transcription elongation factor Elf1 like. This
family of short proteins contains a putative zinc
binding domain with four conserved cysteines. ELF1 has
been identified as a transcription elongation factor in
Saccharomyces cerevisiae.
Length = 74
Score = 27.3 bits (61), Expect = 1.1
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 23 KSHEQSMKAKNQRPKKFNCPHCN 45
K K K + P F+CP CN
Sbjct: 2 KRKPPKKKKKYKLPTVFDCPFCN 24
>gnl|CDD|177288 PHA00616, PHA00616, hypothetical protein.
Length = 44
Score = 25.9 bits (57), Expect = 1.7
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 97 YPCTHCGKKFGRKDHLKKHLRTHFPQPRYVSCYPYMY 133
Y C CG F +K + +HL + Q + Y Y+Y
Sbjct: 2 YQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEYFYIY 38
>gnl|CDD|224908 COG1997, RPL43A, Ribosomal protein L37AE/L43A [Translation,
ribosomal structure and biogenesis].
Length = 89
Score = 26.6 bits (59), Expect = 2.3
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 12/42 (28%)
Query: 65 RPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTHCGKKF 106
+ C CG+ T KRI +G+ + C CG KF
Sbjct: 34 AKHVC--PFCGR--------TTVKRIATGI--WKCRKCGAKF 63
>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component
[Posttranslational modification, protein turnover,
chaperones].
Length = 491
Score = 27.6 bits (61), Expect = 2.5
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 25 HEQSMKAKNQRPKKFNCPHC 44
HE + + PK+ C H
Sbjct: 302 HEPLPRGLDMTPKRLPCGHI 321
>gnl|CDD|227225 COG4888, COG4888, Uncharacterized Zn ribbon-containing protein
[General function prediction only].
Length = 104
Score = 26.7 bits (59), Expect = 2.7
Identities = 6/10 (60%), Positives = 6/10 (60%)
Query: 36 PKKFNCPHCN 45
PK F CP C
Sbjct: 20 PKTFTCPRCG 29
>gnl|CDD|224119 COG1198, PriA, Primosomal protein N' (replication factor Y) -
superfamily II helicase [DNA replication, recombination,
and repair].
Length = 730
Score = 27.3 bits (61), Expect = 3.0
Identities = 18/98 (18%), Positives = 29/98 (29%), Gaps = 42/98 (42%)
Query: 39 FNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYP 98
CP+C+ + +H +C CG + I P
Sbjct: 445 AECPNCDSPLT----------LHKATGQLRC--HYCG----------YQEPI-----PQS 477
Query: 99 CTHCGKKFGRKDHLK----------KHLRTHFPQPRYV 126
C CG +HL+ + L+ FP R +
Sbjct: 478 CPECG-----SEHLRAVGPGTERIEEELKRLFPGARII 510
>gnl|CDD|236014 PRK07418, PRK07418, acetolactate synthase 3 catalytic subunit;
Reviewed.
Length = 616
Score = 26.9 bits (60), Expect = 3.7
Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 11/53 (20%)
Query: 64 ERPYKCDA-----ENC------GKSFTRNEELTRHKRIHSGLRPYPCTHCGKK 105
+ P D ENC GKS + L H + C++CG K
Sbjct: 549 DGPVLIDVHVRRDENCYPMVPPGKSNAQMVGLPEHPELALAAELIYCSNCGAK 601
>gnl|CDD|173607 PTZ00417, PTZ00417, lysine-tRNA ligase; Provisional.
Length = 585
Score = 26.9 bits (59), Expect = 3.9
Identities = 25/100 (25%), Positives = 37/100 (37%), Gaps = 19/100 (19%)
Query: 13 YWSNLALEYFKSHEQSMKAKNQRPKKFNCP-HCNVAFSNNGQLKGHIRIHTGERPYKCDA 71
Y N+ ++K H S N+ K CP HC F + K H+ GE+ K +
Sbjct: 11 YHKNVGSHFYKQHSFSKIILNKN-KNIICPVHCKQCFVTMSEKKEHVM--EGEK--KVRS 65
Query: 72 ENCGKSFTRNEELTRHKRIH-------------SGLRPYP 98
K + EE R++ G+ PYP
Sbjct: 66 VQASKDKKKEEEAEVDPRLYYENRSKFIQEQKAKGINPYP 105
>gnl|CDD|184886 PRK14892, PRK14892, putative transcription elongation factor
Elf1; Provisional.
Length = 99
Score = 25.8 bits (57), Expect = 4.4
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 23 KSHEQSMKAKNQRPKKFNCPHC-----NVAFSNNGQL 54
K ++ ++ K + PK F CP C +V N +
Sbjct: 6 KKRKKIIRPKPKLPKIFECPRCGKVSISVKIKKNIAI 42
>gnl|CDD|172627 PRK14138, PRK14138, NAD-dependent deacetylase; Provisional.
Length = 244
Score = 26.7 bits (59), Expect = 4.4
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 90 IHSGLRPYPCTHCGKKFGRKDHLKKHLRTHFPQ 122
+H + Y C CGK++ +D ++K ++ P+
Sbjct: 113 LHGNVEEYYCVRCGKRYTVEDVIEKLEKSDVPR 145
>gnl|CDD|224569 COG1655, COG1655, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 267
Score = 26.4 bits (58), Expect = 5.1
Identities = 11/28 (39%), Positives = 12/28 (42%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGE 64
K CP CN F G IRI G+
Sbjct: 18 KTIECPVCNTKFKKEEVKTGSIRIIAGD 45
>gnl|CDD|179886 PRK04860, PRK04860, hypothetical protein; Provisional.
Length = 160
Score = 26.0 bits (58), Expect = 6.2
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 10/40 (25%)
Query: 66 PYKCDAENCGKSFTRNEELT--RHKRIHSGLRPYPCTHCG 103
PY+C C + +LT RH R+ G Y C CG
Sbjct: 119 PYRC---KC-----QEHQLTVRRHNRVVRGEAVYRCRRCG 150
>gnl|CDD|222419 pfam13854, Kelch_5, Kelch motif. The kelch motif was initially
discovered in Kelch. In this protein there are six
copies of the motif. It has been shown that the
Drosophila ring canal kelch protein is related to
Galactose Oxidase for which a structure has been solved.
The kelch motif forms a beta sheet. Several of these
sheets associate to form a beta propeller structure as
found in pfam00064, pfam00400 and pfam00415.
Length = 42
Score = 24.1 bits (53), Expect = 6.9
Identities = 11/25 (44%), Positives = 12/25 (48%), Gaps = 6/25 (24%)
Query: 120 FPQPRY------VSCYPYMYGGYTS 138
P PR V Y+YGGYTS
Sbjct: 1 LPVPRANHCAVVVGGEIYLYGGYTS 25
>gnl|CDD|223973 COG1043, LpxA, Acyl-[acyl carrier protein].
Length = 260
Score = 26.0 bits (58), Expect = 6.9
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 45 NVAFSNNGQLKGHIRI 60
N +NN L GH+ +
Sbjct: 130 NCILANNATLAGHVEV 145
>gnl|CDD|219148 pfam06719, AraC_N, AraC-type transcriptional regulator
N-terminus. This family represents the N-terminus of
bacterial ARAC-type transcriptional regulators. In E.
coli, these regulate the L-arabinose operon through
sensing the presence of arabinose, and when the sugar
is present, transmitting this information from the
arabinose-binding domains to the protein's DNA-binding
domains. This family might represent the N-terminal arm
of the protein, which binds to the C-terminal DNA
binding domains to hold them in a state where the
protein prefers to loop and remain non-activating. All
family members contain the pfam00165 domain.
Length = 155
Score = 25.5 bits (57), Expect = 7.7
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 54 LKGHIRIHTGERPYKCDAENC 74
L+G R++ G+ Y+ DA +
Sbjct: 30 LQGAKRVYLGDETYRYDAGHY 50
>gnl|CDD|227610 COG5290, COG5290, IkappaB kinase complex, IKAP component
[Transcription].
Length = 1243
Score = 26.1 bits (57), Expect = 7.8
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 86 RHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTHFPQPRYV 126
+HS L T G+ F + LKK + +H +V
Sbjct: 553 SVDPVHSTLVAIGITDIGQLFALQVLLKKSVFSHNGTKLFV 593
>gnl|CDD|206084 pfam13913, zf-C2HC_2, zinc-finger of a C2HC-type. This family
contains a number of divergent C2H2 type zinc fingers.
Length = 25
Score = 23.7 bits (52), Expect = 8.1
Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 98 PCTHCGKKFGRKDHLKKHLRT 118
PC CG+KF D L KH +
Sbjct: 4 PCPICGRKFAP-DRLAKHEKV 23
>gnl|CDD|219620 pfam07887, Calmodulin_bind, Calmodulin binding protein-like. The
members of this family are putative or actual calmodulin
binding proteins expressed by various plant species.
Some members , are known to be involved in the induction
of plant defence responses. However, their precise
function in this regards is as yet unknown.
Length = 301
Score = 25.8 bits (57), Expect = 8.5
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 8/53 (15%)
Query: 77 SFTRNEELTRHKRIHSGLRPYPCTHCGKK--------FGRKDHLKKHLRTHFP 121
FT N TR ++ G R ++ G + F KDH + + H P
Sbjct: 105 FFTDNSSWTRSRKFRLGARVVDGSYDGVRVREAVTESFVVKDHRGELYKKHHP 157
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.139 0.469
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,944,427
Number of extensions: 564874
Number of successful extensions: 657
Number of sequences better than 10.0: 1
Number of HSP's gapped: 650
Number of HSP's successfully gapped: 72
Length of query: 141
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 54
Effective length of database: 7,078,804
Effective search space: 382255416
Effective search space used: 382255416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.7 bits)