RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17779
(141 letters)
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 129 bits (327), Expect = 2e-40
Identities = 38/89 (42%), Positives = 52/89 (58%)
Query: 32 KNQRPKKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIH 91
K + C ++ + LK H+R HTGE+PY CD + CG F R++ELTRH R H
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH 60
Query: 92 SGLRPYPCTHCGKKFGRKDHLKKHLRTHF 120
+G RP+ C C + F R DHL H++ HF
Sbjct: 61 TGHRPFQCQKCDRAFSRSDHLALHMKRHF 89
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 125 bits (317), Expect = 6e-39
Identities = 37/88 (42%), Positives = 53/88 (60%)
Query: 32 KNQRPKKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIH 91
+ +R + P C ++ + LK H+R HTGE+PYKC E C F R++ELTRH R H
Sbjct: 11 EKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKH 70
Query: 92 SGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G +P+ C C + F R DHL H++ H
Sbjct: 71 TGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 79.6 bits (197), Expect = 1e-20
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Query: 47 AFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTH--CGK 104
+ ++G RIH + P C K +T++ L H R H+G +PY CT C
Sbjct: 2 SSGSSGPDLEKRRIHYCDYPG------CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDW 55
Query: 105 KFGRKDHLKKHLRTH 119
+F R D L +H R H
Sbjct: 56 RFARSDELTRHYRKH 70
Score = 33.4 bits (77), Expect = 0.005
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHT 62
K F C CN +FS + L H++ H
Sbjct: 74 KPFQCGVCNRSFSRSDHLALHMKRHQ 99
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 114 bits (287), Expect = 5e-34
Identities = 39/85 (45%), Positives = 57/85 (67%), Gaps = 2/85 (2%)
Query: 37 KKFNC--PHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGL 94
+ F C P CN + L+ H R HTGE+PY+CD ++C + F+R+++L RH+R H+G+
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGV 64
Query: 95 RPYPCTHCGKKFGRKDHLKKHLRTH 119
+P+ C C +KF R DHLK H RTH
Sbjct: 65 KPFQCKTCQRKFSRSDHLKTHTRTH 89
Score = 102 bits (256), Expect = 3e-29
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 35 RPKKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGL 94
+P + + C FS + QLK H R HTG +P++C + C + F+R++ L H R H+G
Sbjct: 35 KPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQC--KTCQRKFSRSDHLKTHTRTHTGE 92
Query: 95 RPYPC--THCGKKFGRKDHLKKHLRTH 119
+P+ C C KKF R D L +H H
Sbjct: 93 KPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 83.0 bits (206), Expect = 7e-22
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 62 TGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCT--HCGKKFGRKDHLKKHLRTH 119
+ +RP+ C C K + + L H R H+G +PY C C ++F R D LK+H R H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 107 bits (271), Expect = 5e-32
Identities = 36/85 (42%), Positives = 55/85 (64%), Gaps = 4/85 (4%)
Query: 37 KKFNCP--HCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGL 94
+ + CP C+ FS +G L HIRIHTG++P++C C ++F+R++ LT H R H+G
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTGE 60
Query: 95 RPYPCTHCGKKFGRKDHLKKHLRTH 119
+P+ C CG+KF R D K+H + H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 87.5 bits (218), Expect = 6e-24
Identities = 28/56 (50%), Positives = 38/56 (67%)
Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
ERPY C E+C + F+++ LTRH RIH+G +P+ C C + F R DHL H+RTH
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 57
Score = 76.4 bits (189), Expect = 1e-19
Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSG 93
K F C C FS + L HIR HTGE+P+ C + CG+ F R++E RH +IH
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC--DICGRKFARSDERKRHTKIHLR 87
Score = 37.1 bits (87), Expect = 2e-04
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGER 65
K F C C F+ + + K H +IH ++
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 109 bits (274), Expect = 6e-32
Identities = 38/86 (44%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 36 PKKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLR 95
P+ C C AF + +LK H +HTGE+P++C E CGK F+ + L H RIH+G R
Sbjct: 32 PRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDR 91
Query: 96 PYPCTH--CGKKFGRKDHLKKHLRTH 119
PY C C KKF + +LK H+ TH
Sbjct: 92 PYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 95.3 bits (238), Expect = 2e-26
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 7/89 (7%)
Query: 35 RPKKFNCPH--CNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHS 92
P+ CPH C F +N ++ H+ H G R + C CGK+F + +L RH+ +H+
Sbjct: 2 EPRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVC--AECGKAFVESSKLKRHQLVHT 58
Query: 93 GLRPYPCTH--CGKKFGRKDHLKKHLRTH 119
G +P+ CT CGK+F +L+ H+R H
Sbjct: 59 GEKPFQCTFEGCGKRFSLDFNLRTHVRIH 87
Score = 77.9 bits (193), Expect = 8e-20
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 37 KKFNCPH--CNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGL 94
K F C C FS + L+ H+RIHTG+RPY C + C K F ++ L H H+
Sbjct: 61 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKA 120
Query: 95 RPY 97
+
Sbjct: 121 KNN 123
Score = 41.3 bits (98), Expect = 9e-06
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 37 KKFNCPH--CNVAFSNNGQLKGHIRIHTGERPYK 68
+ + CP CN F+ + LK HI H + +
Sbjct: 91 RPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ 124
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 108 bits (271), Expect = 3e-31
Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 40 NCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPC 99
CP +F +L HIR+HTGE+P+ C CGK F R+E L HKR H+G +P+ C
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123
Query: 100 TH--CGKKFGRKDHLKKHLRTH 119
C ++F KKH+ H
Sbjct: 124 EFEGCDRRFANSSDRKKHMHVH 145
Score = 97.0 bits (242), Expect = 9e-27
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 9/93 (9%)
Query: 36 PKKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDA-------ENCGKSFTRNEELTRHK 88
C+ FS +L H+ + P + + GKSF +L H
Sbjct: 23 QLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI 82
Query: 89 RIHSGLRPYPCTH--CGKKFGRKDHLKKHLRTH 119
R+H+G +P+PC CGK F R ++LK H RTH
Sbjct: 83 RVHTGEKPFPCPFPGCGKIFARSENLKIHKRTH 115
Score = 81.6 bits (202), Expect = 8e-21
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 37 KKFNCPH--CNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGL 94
K F CP C F+ + LK H R HTGE+P+KC+ E C + F + + +H +H+
Sbjct: 89 KPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSD 148
Query: 95 RPYPCT 100
+ P +
Sbjct: 149 KSGPSS 154
Score = 78.1 bits (193), Expect = 2e-19
Identities = 17/85 (20%), Positives = 26/85 (30%), Gaps = 11/85 (12%)
Query: 44 CNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPY------ 97
+ Q I + ++C ++F+ EL H + P
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPK--KSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC 60
Query: 98 ---PCTHCGKKFGRKDHLKKHLRTH 119
C GK F K L H+R H
Sbjct: 61 YWEECPREGKSFKAKYKLVNHIRVH 85
Score = 58.8 bits (143), Expect = 5e-12
Identities = 9/47 (19%), Positives = 14/47 (29%)
Query: 73 NCGKSFTRNEELTRHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+ G S ++ K I P C + F L H+
Sbjct: 2 SSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTME 48
Score = 46.1 bits (110), Expect = 2e-07
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 37 KKFNCPH--CNVAFSNNGQLKGHIRIHTGERPYKCDA 71
K F C C+ F+N+ K H+ +HT ++
Sbjct: 119 KPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSSG 155
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 104 bits (262), Expect = 2e-30
Identities = 31/83 (37%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
C C FS +LK H+R HTG +PYKC + C + + L +H RIHS RP
Sbjct: 7 GPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKC--KTCDYAAADSSSLNKHLRIHSDERP 64
Query: 97 YPCTHCGKKFGRKDHLKKHLRTH 119
+ C C L HLR+H
Sbjct: 65 FKCQICPYASRNSSQLTVHLRSH 87
Score = 85.9 bits (214), Expect = 3e-23
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 61 HTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
P+KC E CGK F+R ++L H R H+G++PY C C L KHLR H
Sbjct: 3 SGSSGPHKC--EVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIH 59
Score = 79.8 bits (198), Expect = 9e-21
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
K + C C+ A +++ L H+RIH+ ERP+KC + C + + +LT H R H+G
Sbjct: 35 KPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC--QICPYASRNSSQLTVHLRSHTGDSG 92
Query: 97 YPC 99
Sbjct: 93 PSS 95
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 103 bits (259), Expect = 6e-30
Identities = 33/83 (39%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
K+F C C F+ + L H R HT ERPY C + C K+F R + L H+ IHS +P
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTC--DICHKAFRRQDHLRDHRYIHSKEKP 73
Query: 97 YPCTHCGKKFGRKDHLKKHLRTH 119
+ C CGK F + L H H
Sbjct: 74 FKCQECGKGFCQSRTLAVHKTLH 96
Score = 93.7 bits (234), Expect = 4e-26
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 54 LKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTHCGKKFGRKDHLK 113
G ++ + C + CG+ FT++ L H+R H+ RPY C C K F R+DHL+
Sbjct: 5 SSGGRLPSKTKKEFIC--KFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLR 62
Query: 114 KHLRTH 119
H H
Sbjct: 63 DHRYIH 68
Score = 79.8 bits (198), Expect = 1e-20
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
+ + C C+ AF L+ H IH+ E+P+KC + CGK F ++ L HK +H
Sbjct: 44 RPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKC--QECGKGFCQSRTLAVHKTLHMQTSS 101
Query: 97 YPCT 100
Sbjct: 102 PTAA 105
Score = 43.6 bits (104), Expect = 9e-07
Identities = 8/35 (22%), Positives = 11/35 (31%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDA 71
K F C C F + L H +H +
Sbjct: 72 KPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTAAS 106
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 101 bits (255), Expect = 8e-30
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 46 VAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTHCGKK 105
+ L ++ RPY C E+C + F+R++ELTRH RIH+G +P+ C C +
Sbjct: 1 MEPHPMNNLLNYVV--PKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRN 58
Query: 106 FGRKDHLKKHLRTH 119
F R DHL H+RTH
Sbjct: 59 FSRSDHLTTHIRTH 72
Score = 61.6 bits (150), Expect = 6e-14
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 24 SHEQSMKAKNQRPKKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEE 83
++ + RP C+ FS + +L HIRIHTG++P++C C ++F+R++
Sbjct: 7 NNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQC--RICMRNFSRSDH 64
Query: 84 LTRHKRIHS 92
LT H R H+
Sbjct: 65 LTTHIRTHT 73
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 105 bits (265), Expect = 8e-30
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 35 RPKKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGL 94
+ + C A++ N +L+ H+ HTGE+P+ C E C K FT LTRH H+G
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 70
Query: 95 RPYPCTH--CGKKFGRKDHLKKHLRTH 119
+ + C C +F K ++KKH
Sbjct: 71 KNFTCDSDGCDLRFTTKANMKKHFNRF 97
Score = 96.5 bits (241), Expect = 3e-26
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 35 RPKKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSG- 93
+P C F++ L H HTGE+ + CD++ C FT + +H
Sbjct: 41 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNI 100
Query: 94 -LRPYPCT--HCGKKFGRKDHLKKHLRTH 119
+ Y C +CGK F + + LK H +H
Sbjct: 101 KICVYVCHFENCGKAFKKHNQLKVHQFSH 129
Score = 94.6 bits (236), Expect = 1e-25
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 34 QRPKKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSG 93
+ +C AF + QLK H HT + PY+C E C K F+ L RH+++H+G
Sbjct: 102 ICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 161
Query: 94 L---RPYPCTHCGKKFGRKDHLKKHLRTH 119
+ C+ GK + +LK H
Sbjct: 162 YPCKKDDSCSFVGKTWT--LYLKHVAECH 188
Score = 93.4 bits (233), Expect = 5e-25
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 56 GHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTH--CGKKFGRKDHLK 113
G + + Y C +CG ++ +N +L H H+G +P+PC C K F HL
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLT 61
Query: 114 KHLRTH 119
+H TH
Sbjct: 62 RHSLTH 67
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 101 bits (255), Expect = 1e-29
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 39 FNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYP 98
F+C C +F + L H+ IH+ RPY C + CGK F + ++ +H IH+G +P+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPC--QYCGKRFHQKSDMKKHTFIHTGEKPHK 59
Query: 99 CTHCGKKFGRKDHLKKHLRTH 119
C CGK F + +L H R H
Sbjct: 60 CQVCGKAFSQSSNLITHSRKH 80
Score = 71.3 bits (176), Expect = 1e-17
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSG 93
+ + C +C F +K H IHTGE+P+KC + CGK+F+++ L H R H+G
Sbjct: 28 RPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC--QVCGKAFSQSSNLITHSRKHTG 82
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 104 bits (263), Expect = 1e-29
Identities = 41/83 (49%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
K + CP C +FS + L H R HTGE+PYKC CGKSF+ ++LTRH+R H+G +P
Sbjct: 20 KPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCP--ECGKSFSDKKDLTRHQRTHTGEKP 77
Query: 97 YPCTHCGKKFGRKDHLKKHLRTH 119
Y C CGK F ++ +L+ H RTH
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTH 100
Score = 104 bits (262), Expect = 2e-29
Identities = 40/83 (48%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
K + CP C +FS L+ H R HTGE+PY C CGKSF++ L H+R H+G +P
Sbjct: 76 KPYKCPECGKSFSQRANLRAHQRTHTGEKPYACP--ECGKSFSQLAHLRAHQRTHTGEKP 133
Query: 97 YPCTHCGKKFGRKDHLKKHLRTH 119
Y C CGK F R+D+L H RTH
Sbjct: 134 YKCPECGKSFSREDNLHTHQRTH 156
Score = 104 bits (261), Expect = 3e-29
Identities = 42/83 (50%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
K + CP C +FS L+ H R HTGE+PYKC CGKSF+R + L H+R H+G +P
Sbjct: 104 KPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCP--ECGKSFSREDNLHTHQRTHTGEKP 161
Query: 97 YPCTHCGKKFGRKDHLKKHLRTH 119
Y C CGK F R+D L H RTH
Sbjct: 162 YKCPECGKSFSRRDALNVHQRTH 184
Score = 99.4 bits (249), Expect = 2e-27
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 46 VAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTHCGKK 105
++ + + GE+PY C CGKSF+R++ L H+R H+G +PY C CGK
Sbjct: 1 ISEFGSSSSVAQAALEPGEKPYAC--PECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKS 58
Query: 106 FGRKDHLKKHLRTH 119
F K L +H RTH
Sbjct: 59 FSDKKDLTRHQRTH 72
Score = 72.9 bits (180), Expect = 4e-17
Identities = 28/60 (46%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
K + CP C +FS L H R HTGE+PYKC CGKSF+R + L H+R H+G +
Sbjct: 132 KPYKCPECGKSFSREDNLHTHQRTHTGEKPYKC--PECGKSFSRRDALNVHQRTHTGKKT 189
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 103 bits (260), Expect = 2e-29
Identities = 35/83 (42%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 40 NCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPC 99
C F L H+R HTGE+P+KC E C KS++R E L H R H+G +PY C
Sbjct: 41 GCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMC 100
Query: 100 TH--CGKKFGRKDHLKKH-LRTH 119
H C K F KH RTH
Sbjct: 101 EHEGCSKAFSNASDRAKHQNRTH 123
Score = 96.5 bits (241), Expect = 1e-26
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 37 KKFNCPH--CNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHK-RIHSG 93
K C C ++S LK H+R HTGE+PY C+ E C K+F+ + +H+ R HS
Sbjct: 66 KPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSN 125
Query: 94 LRPYPCTH--CGKKFGRKDHLKKHLRTH 119
+PY C C K++ L+KH++T
Sbjct: 126 EKPYVCKLPGCTKRYTDPSSLRKHVKTV 153
Score = 93.8 bits (234), Expect = 1e-25
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHI---RIHTGERPYKCDAENC---GKSFTRNEELTRHKRI 90
C+ F + QL HI IH + + C C + F L H R
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR 61
Query: 91 HSGLRPYPCTH--CGKKFGRKDHLKKHLRTH 119
H+G +P+ CT C K + R ++LK HLR+H
Sbjct: 62 HTGEKPHKCTFEGCRKSYSRLENLKTHLRSH 92
Score = 69.2 bits (170), Expect = 4e-16
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 37 KKFNCPH--CNVAFSNNGQLKGHI-RIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSG 93
K + C H C+ AFSN H R H+ E+PY C C K +T L +H + G
Sbjct: 96 KPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 63.0 bits (154), Expect = 1e-13
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 10/64 (15%)
Query: 64 ERPYKCDAENCGKSFTRNEELTRH---KRIHSGLRPYPCTHCG-----KKFGRKDHLKKH 115
E + + C + F E+L H + IH + + C G + F + L H
Sbjct: 1 ETDCRW--DGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVH 58
Query: 116 LRTH 119
+R H
Sbjct: 59 MRRH 62
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 100 bits (252), Expect = 5e-29
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
K F C C FS + L HIR HTGE+P+ C + CG+ F R++E RH+ I P
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC--DICGRKFARSDERKRHRDIQHI-LP 58
Query: 97 YPCTHCGKKFGRKDHLKKH---LRTH 119
+ + HL+ L+
Sbjct: 59 ILEDKVEELLSKNYHLENEVARLKKL 84
Score = 43.6 bits (104), Expect = 6e-07
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 94 LRPYPCTHCGKKFGRKDHLKKHLRTH 119
++P+ C C + F R DHL H+RTH
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTH 26
Score = 32.9 bits (76), Expect = 0.007
Identities = 6/32 (18%), Positives = 9/32 (28%), Gaps = 3/32 (9%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHI---RIHTGER 65
S N L+ + + GER
Sbjct: 57 LPILEDKVEELLSKNYHLENEVARLKKLVGER 88
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 100 bits (251), Expect = 7e-29
Identities = 32/86 (37%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSG--L 94
C C F + L H H+GE+PY C CG F R + ++ H R H G
Sbjct: 6 SGVACEICGKIFRDVYHLNRHKLSHSGEKPYSC--PVCGLRFKRKDRMSYHVRSHDGSVG 63
Query: 95 RPYPCTHCGKKFGRKDHLKKHL-RTH 119
+PY C CGK F R DHL H+ + H
Sbjct: 64 KPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 87.5 bits (218), Expect = 7e-24
Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 61 HTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G C E CGK F L RHK HSG +PY C CG +F RKD + H+R+H
Sbjct: 2 SSGSSGVAC--EICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSH 58
Score = 31.7 bits (73), Expect = 0.023
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 36 PKKFNCPHCNVAFSNNGQLKGHI-RIHTGER 65
K + C C FS L GHI ++H+G
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 99.2 bits (248), Expect = 1e-28
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 40 NCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPC 99
+ +C AF + QLK H HT + PY+C E C K F+ L RH+++H+G
Sbjct: 5 HFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD 64
Query: 100 THCGKKFGRKDHLKKHL-RTH 119
C KH+ H
Sbjct: 65 DSCSFVGKTWTLYLKHVAECH 85
Score = 73.4 bits (181), Expect = 2e-18
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 67 YKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTH--CGKKFGRKDHLKKHLRTH 119
Y C ENCGK+F ++ +L H+ H+ PY C H C K+F LK+H + H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 56
Score = 49.2 bits (118), Expect = 5e-09
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Query: 37 KKFNCPH--CNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRH-KRIH 91
+ CPH C+ FS +LK H ++H G K ++C +H H
Sbjct: 30 LPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD--DSCSFVGKTWTLYLKHVAECH 85
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 100 bits (251), Expect = 2e-28
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKR---IHSG 93
CP C+ F + LK H R HTGE+P++C CGK + R E L H+ ++
Sbjct: 6 SGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECP--KCGKCYFRKENLLEHEARNCMNRS 63
Query: 94 LRPYPCTHCGKKFGRKDHLKKHLRTH 119
+ + C+ C + F R+ L+ H+ +H
Sbjct: 64 EQVFTCSVCQETFRRRMELRLHMVSH 89
Score = 96.0 bits (240), Expect = 7e-27
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIR---IHTGERPYKCDAENCGKSFTRNEELTRHKRIHSG 93
K F CP C + L H ++ E+ + C C ++F R EL H H+G
Sbjct: 34 KPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCS--VCQETFRRRMELRLHMVSHTG 91
Query: 94 LRPYPCTHCGKKFGRKDHLKKH-LRTH 119
PY C+ C ++F +K L+ H ++ H
Sbjct: 92 EMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 80.2 bits (199), Expect = 1e-20
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 61 HTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G +C C K F L H R H+G +P+ C CGK + RK++L +H +
Sbjct: 2 SSGSSGVECP--TCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARN 58
Score = 30.9 bits (71), Expect = 0.051
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 37 KKFNCPHCNVAFSNNGQLKGH-IRIHTGER 65
+ C C+ F L+ H I++H+G
Sbjct: 93 MPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 96.4 bits (241), Expect = 1e-27
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 52 GQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSG--LRPYPCTHCGKKFGRK 109
G R H+GE+PY+C C FT++ + H + + C HC RK
Sbjct: 1 GSSGSSGRTHSGEKPYECY--ICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARK 58
Query: 110 DHLKKHLRTH 119
L HLR
Sbjct: 59 SDLGVHLRKQ 68
Score = 69.9 bits (172), Expect = 4e-17
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGE--RPYKCDAENCGKSFTRNEELTRH-KRIHSG 93
K + C C+ F+ +G +K HI E + C +C R +L H ++ HS
Sbjct: 14 KPYECYICHARFTQSGTMKMHILQKHTENVAKFHC--PHCDTVIARKSDLGVHLRKQHSY 71
Query: 94 LRPY 97
P
Sbjct: 72 SGPS 75
Score = 43.3 bits (103), Expect = 7e-07
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 35 RPKKFNCPHCNVAFSNNGQLKGHIR-IHTGERPY 67
KF+CPHC+ + L H+R H+ P
Sbjct: 42 NVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPS 75
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 94.8 bits (237), Expect = 2e-26
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
K + C C +F++ Q H+ +H G RPY C CGK F L H +IH+G++P
Sbjct: 9 KLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCG--VCGKKFKMKHHLVGHMKIHTGIKP 65
Query: 97 YPCTHCGKKFGRKDHLKKHLRTH 119
Y C C K+F +D H
Sbjct: 66 YECNICAKRFMWRDSF--HRHVT 86
Score = 92.1 bits (230), Expect = 1e-25
Identities = 28/61 (45%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 59 RIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRT 118
+G++ Y C CGKSFT + RH +H GLRPY C CGKKF K HL H++
Sbjct: 3 SGSSGDKLYPCQ---CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI 59
Query: 119 H 119
H
Sbjct: 60 H 60
Score = 86.0 bits (214), Expect = 4e-23
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
+ + C C F L GH++IHTG +PY+C+ C K F + H+ + S +
Sbjct: 36 RPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN--ICAKRFMWRDSF--HRHVTSCTKS 91
Query: 97 YPCTHCGKKFGRKDHL 112
Y +
Sbjct: 92 YEAAKAEQNTTEASGP 107
Score = 52.1 bits (126), Expect = 7e-10
Identities = 7/49 (14%), Positives = 15/49 (30%), Gaps = 4/49 (8%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELT 85
K + C C F H + + + Y+ ++ T +
Sbjct: 64 KPYECNICAKRFMWRDSF--HRHVTSCTKSYEAA--KAEQNTTEASGPS 108
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 93.4 bits (233), Expect = 2e-26
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Query: 35 RPKKFNCPHCNVAFSNNGQLKGHIRI-HTGERPYKCDAENCGKSFTRNEELTRHKRIHSG 93
+ P C FSN L H + H ++ + C CGKSF + L H ++HS
Sbjct: 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSD 65
Query: 94 LRPYPCTHCGKKFG 107
R Y C G G
Sbjct: 66 TRDYICEFSGPSSG 79
Score = 88.0 bits (219), Expect = 3e-24
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 61 HTGERPYKCDAENCGKSFTRNEELTRHKRI-HSGLRPYPCTH--CGKKFGRKDHLKKHLR 117
+G CD CG+ F+ + L HK+ H + + C CGK F K HLK+H++
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 118 TH 119
H
Sbjct: 62 LH 63
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 92.6 bits (231), Expect = 3e-26
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 59 RIHTGERPYKCDAENCGKSFTRNEELTRHKRI--HSGLRPYPCTHCGKKFGRKDHLKKHL 116
GE Y+C + C + +T RH ++ YPC C K+F RKD++ H+
Sbjct: 3 FTKEGEHTYRC--KVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60
Query: 117 RTH 119
+
Sbjct: 61 KII 63
Score = 63.3 bits (155), Expect = 1e-14
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRI--HTGERPYKCDAENCGKSFTRNEELTRHKRIHSGL 94
+ C C+ +++ H + Y C C K FTR + +T H +I +
Sbjct: 9 HTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPC--PFCFKEFTRKDNMTAHVKIIHKI 66
Score = 47.5 bits (114), Expect = 1e-08
Identities = 6/32 (18%), Positives = 11/32 (34%)
Query: 88 KRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+ G Y C C + + + +H T
Sbjct: 2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTS 33
Score = 34.8 bits (81), Expect = 8e-04
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 22 FKSHEQSMKAKNQRPKKFNCPHCNVAFSNNGQLKGHIRIHTG 63
F H + +N + + CP C F+ + H++I
Sbjct: 26 FCRHYVTSHKRNVKV--YPCPFCFKEFTRKDNMTAHVKIIHK 65
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 91.7 bits (229), Expect = 9e-26
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 51 NGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTHCGKKFGRKD 110
+G R YKCD CGKSF+ + +L++H+R H+G +PY C CGK F ++
Sbjct: 3 SGSSGRSEWQQRERRRYKCD--ECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRS 60
Query: 111 HLKKHLRTH 119
HL H R H
Sbjct: 61 HLIGHHRVH 69
Score = 75.2 bits (186), Expect = 4e-19
Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
+++ C C +FS++ L H R HTGE+PYKCD CGK+F + L H R+H+G P
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCD--ECGKAFIQRSHLIGHHRVHTGSGP 74
Query: 97 Y 97
Sbjct: 75 S 75
Score = 41.3 bits (98), Expect = 4e-06
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYK 68
K + C C AF L GH R+HTG P
Sbjct: 45 KPYKCDECGKAFIQRSHLIGHHRVHTGSGPSS 76
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 91.4 bits (228), Expect = 1e-25
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 54 LKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTHCGKKFGRKDHLK 113
H + ++PYKC + C SF L HK +H+G +PY C CG +F R +LK
Sbjct: 5 HHHHSHMTHSDKPYKC--DRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLK 62
Query: 114 KHLRTH 119
H R H
Sbjct: 63 THTRIH 68
Score = 76.7 bits (190), Expect = 8e-20
Identities = 27/61 (44%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
K + C C +F G L H +HTGE+PY+C CG F R L H RIHSG +P
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRC--NICGAQFNRPANLKTHTRIHSGEKP 73
Query: 97 Y 97
Y
Sbjct: 74 Y 74
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 91.0 bits (227), Expect = 2e-25
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 54 LKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTHCGKKFGRKDHLK 113
G IH+GE+PY C CGK+F+R+ L +H+R+H+G +PY C CGK F + L
Sbjct: 2 SSGSSGIHSGEKPYGC--VECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLI 59
Query: 114 KHLRTH 119
H R H
Sbjct: 60 NHQRIH 65
Score = 75.6 bits (187), Expect = 2e-19
Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
K + C C AFS + L H R+HTGE+PYKC CGK+F++N L H+RIH+
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCL--ECGKAFSQNSGLINHQRIHTSGPS 70
Query: 97 Y 97
Sbjct: 71 S 71
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 89.5 bits (223), Expect = 1e-24
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 52 GQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSG----LRPYPCTHCGKKFG 107
G R HTGE+PY C +C K+F + + L H + + + C+ CGK F
Sbjct: 1 GSSGSSGRTHTGEKPYACS--HCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFT 58
Query: 108 RKDHLKKHLRTH 119
R++ + +H
Sbjct: 59 RRNTMARHADNC 70
Score = 86.0 bits (214), Expect = 2e-23
Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 6/75 (8%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGE----RPYKCDAENCGKSFTRNEELTRHKRIHS 92
K + C HC+ F L H + + + C CGK+FTR + RH +
Sbjct: 14 KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCS--KCGKTFTRRNTMARHADNCA 71
Query: 93 GLRPYPCTHCGKKFG 107
G + G G
Sbjct: 72 GPDGVEGENSGPSSG 86
Score = 53.7 bits (130), Expect = 8e-11
Identities = 12/46 (26%), Positives = 15/46 (32%), Gaps = 2/46 (4%)
Query: 33 NQRPKKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSF 78
N P F C C F+ + H G + EN G S
Sbjct: 42 NFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEG--ENSGPSS 85
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 84.5 bits (210), Expect = 5e-23
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 59 RIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRT 118
+ P KC C S + L H+RIH RP+ C +C + +L KH++
Sbjct: 2 SSGSSGHPEKCS--ECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKK 59
Query: 119 H 119
Sbjct: 60 F 60
Score = 69.8 bits (172), Expect = 3e-17
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
C C+ + S+ L+ H RIH +RP+KC+ C + L++H + G
Sbjct: 8 HPEKCSECSYSCSSKAALRIHERIHCTDRPFKCN--YCSFDTKQPSNLSKHMKKFHGDMS 65
Query: 97 YPCT 100
P +
Sbjct: 66 GPSS 69
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 82.8 bits (205), Expect = 2e-22
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 53 QLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTH--CGKKFGRKD 110
G + R + C CGK++ ++ L H R H+G +P+ C+ C ++F R D
Sbjct: 4 GSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSD 63
Query: 111 HLKKHLRTH 119
L +H RTH
Sbjct: 64 ELSRHRRTH 72
Score = 74.3 bits (183), Expect = 6e-19
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 23 KSHEQSMKAKNQRPKKFNCPH--CNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTR 80
S + + R + C H C + + LK H R HTGE+P+ C + C + F R
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 81 NEELTRHKRIH 91
++EL+RH+R H
Sbjct: 62 SDELSRHRRTH 72
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 80.9 bits (200), Expect = 2e-21
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 61 HTGERPYKCDAENCGKSFTRNEELTRHKRIHS---GLRPYPCTHCGKKFGRKDHLKKHLR 117
+G +C+ CG + + L H+R H+ +PC CGK+F + D + H
Sbjct: 2 SSGSSGLQCEI--CGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRS 59
Query: 118 THFPQPRYVSC 128
P
Sbjct: 60 KSHPALLLAPQ 70
Score = 68.6 bits (168), Expect = 1e-16
Identities = 18/75 (24%), Positives = 23/75 (30%), Gaps = 6/75 (8%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHT---GERPYKCDAENCGKSFTRNEELTRHKRI-HS 92
C C L H R H + C E CGK F + + + H+ H
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPC--EFCGKRFEKPDSVAAHRSKSHP 63
Query: 93 GLRPYPCTHCGKKFG 107
L P G G
Sbjct: 64 ALLLAPQESSGPSSG 78
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 77.7 bits (192), Expect = 2e-20
Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCT 100
TGE+P+ C CG F+R++EL+RH+R HSG++P +
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 50.0 bits (120), Expect = 1e-09
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 87 HKRIHSGLRPYPCTH--CGKKFGRKDHLKKHLRTH 119
+G +P+ CT CG +F R D L +H R+H
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSH 37
Score = 39.6 bits (93), Expect = 9e-06
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 35 RPKKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDA 71
+P P C FS + +L H R H+G +P +
Sbjct: 11 KPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSS 47
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 77.5 bits (192), Expect = 2e-20
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 65 RPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTHCGKKFGRKDHLKKHL-RTH 119
R + C E C ++F R E L RH R H+ +PYPC C + F R+D L +H + H
Sbjct: 1 RSFVC--EVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 70.6 bits (174), Expect = 1e-17
Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRH-KRIHSG 93
+ F C C AF+ LK H R HT E+PY C C ++FTR + L RH ++IHSG
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCG--LCNRAFTRRDLLIRHAQKIHSG 56
Score = 29.4 bits (67), Expect = 0.073
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHI-RIHTGE 64
K + C CN AF+ L H +IH+G
Sbjct: 29 KPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 67.2 bits (165), Expect = 2e-16
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRH-KRIHSGLRPYPCTHCGKKF 106
+ +PY C ++CGK F+R + L H K++H+ RP+ C
Sbjct: 3 SGSSGSVGKPYIC--QSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 51.8 bits (125), Expect = 2e-10
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHI-RIHTGERPYKCDAENCGKSFT 79
K + C C FS L GHI ++HT ERP+KC + +
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC--QVWVSGPS 52
Score = 44.1 bits (105), Expect = 2e-07
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 87 HKRIHSGLRPYPCTHCGKKFGRKDHLKKHLR 117
S +PY C CGK F R DHL H++
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIK 33
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.8 bits (164), Expect = 3e-16
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCT 100
+GE+PYKC CGK+F R+ L H+RIH+G RP +
Sbjct: 3 SGSSGSGEKPYKC--SECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 49.4 bits (119), Expect = 2e-09
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 86 RHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
SG +PY C+ CGK F R HL +H R H
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIH 35
Score = 44.0 bits (105), Expect = 2e-07
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDA 71
K + C C AF + L H RIHTG RP +
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSS 45
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 66.8 bits (164), Expect = 3e-16
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTH 101
TGE+ YKC+ CGK F+RN +L++H++IH+G +P +
Sbjct: 3 SGSSGTGEKRYKCN--ECGKVFSRNSQLSQHQKIHTGEKPSGPSS 45
Score = 47.1 bits (113), Expect = 1e-08
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 86 RHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G + Y C CGK F R L +H + H
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIH 35
Score = 44.0 bits (105), Expect = 2e-07
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKC 69
K++ C C FS N QL H +IHTGE+P
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.8 bits (164), Expect = 3e-16
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTH 101
TG++PYKC CGK FT+N L RH+ IH+G +P +
Sbjct: 3 SGSSGTGKKPYKC--NECGKVFTQNSHLARHRGIHTGEKPSGPSS 45
Score = 47.1 bits (113), Expect = 1e-08
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 87 HKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G +PY C CGK F + HL +H H
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 43.6 bits (104), Expect = 2e-07
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDA 71
K + C C F+ N L H IHTGE+P +
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS 45
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.8 bits (164), Expect = 3e-16
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTH 101
TGE+PY C+ CGK+F + L +H R+H+ +
Sbjct: 3 SGSSGTGEKPYSCN--VCGKAFVLSAHLNQHLRVHTQETLSGPSS 45
Score = 48.3 bits (116), Expect = 5e-09
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 86 RHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G +PY C CGK F HL +HLR H
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 44.4 bits (106), Expect = 1e-07
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDA 71
K ++C C AF + L H+R+HT E +
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS 45
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 66.8 bits (164), Expect = 3e-16
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCT 100
+GERPY C+ CGK+F R+ L H + H + +
Sbjct: 3 SGSSGSGERPYGCN--ECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 54.8 bits (133), Expect = 1e-11
Identities = 17/33 (51%), Positives = 19/33 (57%)
Query: 87 HKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
SG RPY C CGK FGR HL +HL+ H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRH 35
Score = 42.9 bits (102), Expect = 4e-07
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDA 71
+ + C C F + L H++ H E+ +
Sbjct: 11 RPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSS 45
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.4 bits (163), Expect = 4e-16
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTH 101
+GE+PYKC CGK FT+N LT H RIH+G +P +
Sbjct: 3 SGSSGSGEKPYKC--NECGKVFTQNSHLTNHWRIHTGEKPSGPSS 45
Score = 49.4 bits (119), Expect = 2e-09
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 86 RHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
SG +PY C CGK F + HL H R H
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIH 35
Score = 43.6 bits (104), Expect = 2e-07
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKC 69
K + C C F+ N L H RIHTGE+P
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.4 bits (163), Expect = 4e-16
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTH 101
TGE+PYKC+ CGK FT+N L RH+ IH+G +P +
Sbjct: 3 SGSSGTGEKPYKCN--ECGKVFTQNSHLARHRGIHTGEKPSGPSS 45
Score = 47.1 bits (113), Expect = 1e-08
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 87 HKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G +PY C CGK F + HL +H H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 43.6 bits (104), Expect = 2e-07
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDA 71
K + C C F+ N L H IHTGE+P +
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS 45
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.3 bits (163), Expect = 4e-16
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTH 101
TGE+PYKC CGK FT+N L RH+ IH+G +P +
Sbjct: 3 SGSSGTGEKPYKC--NECGKVFTQNSHLVRHRGIHTGEKPSGPSS 45
Score = 48.2 bits (116), Expect = 4e-09
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 86 RHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G +PY C CGK F + HL +H H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIH 35
Score = 43.6 bits (104), Expect = 3e-07
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDA 71
K + C C F+ N L H IHTGE+P +
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS 45
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 66.4 bits (163), Expect = 4e-16
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTH 101
TGE+P+ C +CGK+F+ + L +H+RIH+G +P +
Sbjct: 3 SGSSGTGEKPFDCI--DCGKAFSDHIGLNQHRRIHTGEKPSGPSS 45
Score = 47.1 bits (113), Expect = 1e-08
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 87 HKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G +P+ C CGK F L +H R H
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIH 35
Score = 44.4 bits (106), Expect = 1e-07
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDA 71
K F+C C AFS++ L H RIHTGE+P +
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSS 45
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.4 bits (163), Expect = 5e-16
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTH 101
TGE+PY+CD C K+F+ + LT+H+R+HSG +P +
Sbjct: 3 SGSSGTGEKPYECD--VCRKAFSHHASLTQHQRVHSGEKPSGPSS 45
Score = 46.7 bits (112), Expect = 2e-08
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 87 HKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G +PY C C K F L +H R H
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVH 35
Score = 44.0 bits (105), Expect = 2e-07
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKC 69
K + C C AFS++ L H R+H+GE+P
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 66.4 bits (163), Expect = 5e-16
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTH 101
TGE+PY+C CGK+F + LT+H+RIH+G +P +
Sbjct: 3 SGSSGTGEKPYRCG--ECGKAFAQKANLTQHQRIHTGEKPSGPSS 45
Score = 47.9 bits (115), Expect = 6e-09
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 86 RHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G +PY C CGK F +K +L +H R H
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIH 35
Score = 43.3 bits (103), Expect = 3e-07
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKC 69
K + C C AF+ L H RIHTGE+P
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 66.4 bits (163), Expect = 5e-16
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTH 101
TGERP+KC+ CGKSF ++ L +H+RIH+G +P +
Sbjct: 3 SGSSGTGERPHKCN--ECGKSFIQSAHLIQHQRIHTGEKPSGPSS 45
Score = 49.0 bits (118), Expect = 2e-09
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 86 RHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G RP+ C CGK F + HL +H R H
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIH 35
Score = 42.9 bits (102), Expect = 5e-07
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDA 71
+ C C +F + L H RIHTGE+P +
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSS 45
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.1 bits (162), Expect = 5e-16
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTH 101
TGE+PYKC CGK+F N T+H+R+H+G RP +
Sbjct: 3 SGSSGTGEKPYKC--MECGKAFGDNSSCTQHQRLHTGQRPSGPSS 45
Score = 46.0 bits (110), Expect = 3e-08
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 87 HKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G +PY C CGK FG +H R H
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLH 35
Score = 44.9 bits (107), Expect = 1e-07
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDA 71
K + C C AF +N H R+HTG+RP +
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSS 45
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 66.0 bits (162), Expect = 6e-16
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTH 101
TGE+P+KC CGK F+R L H ++H+G +P +
Sbjct: 3 SGSSGTGEKPFKCV--ECGKGFSRRSALNVHHKLHTGEKPSGPSS 45
Score = 47.1 bits (113), Expect = 1e-08
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 86 RHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G +P+ C CGK F R+ L H + H
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLH 35
Score = 44.4 bits (106), Expect = 1e-07
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDA 71
K F C C FS L H ++HTGE+P +
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSS 45
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.0 bits (162), Expect = 6e-16
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTH 101
TGE+PYKC+ CGK FT+N L RH+R+H+G +P +
Sbjct: 3 SGSSGTGEKPYKCN--ECGKVFTQNSHLARHRRVHTGGKPSGPSS 45
Score = 47.1 bits (113), Expect = 1e-08
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 87 HKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G +PY C CGK F + HL +H R H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVH 35
Score = 43.3 bits (103), Expect = 3e-07
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDA 71
K + C C F+ N L H R+HTG +P +
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSS 45
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 66.0 bits (162), Expect = 6e-16
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCT 100
TGE+PYKC + CGK+F + L +H +HSG RP +
Sbjct: 3 SGSSGTGEKPYKC--QVCGKAFRVSSHLVQHHSVHSGERPSGPS 44
Score = 47.5 bits (114), Expect = 9e-09
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 86 RHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G +PY C CGK F HL +H H
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVH 35
Score = 43.7 bits (104), Expect = 3e-07
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDA 71
K + C C AF + L H +H+GERP +
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS 45
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.6 bits (161), Expect = 7e-16
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTH 101
TGE+PY C CGK+FT L +H++IH+ +P +
Sbjct: 3 SGSSGTGEKPYICA--ECGKAFTIRSNLIKHQKIHTKQKPSGPSS 45
Score = 47.1 bits (113), Expect = 1e-08
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 87 HKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G +PY C CGK F + +L KH + H
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIH 35
Score = 44.0 bits (105), Expect = 2e-07
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKC 69
K + C C AF+ L H +IHT ++P
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 65.6 bits (161), Expect = 7e-16
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTH 101
TGE+P++C CGKSF+ + +L H+RIH+G +P +
Sbjct: 3 SGSSGTGEKPFEC--AECGKSFSISSQLATHQRIHTGEKPSGPSS 45
Score = 48.3 bits (116), Expect = 4e-09
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 86 RHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G +P+ C CGK F L H R H
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIH 35
Score = 45.6 bits (109), Expect = 5e-08
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDA 71
K F C C +FS + QL H RIHTGE+P +
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS 45
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 65.6 bits (161), Expect = 7e-16
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCT 100
TGE+ Y C + CGKSF+R L +H+R+HSG +P +
Sbjct: 3 SGSSGTGEKLYNC--KECGKSFSRAPCLLKHERLHSGEKPSGPS 44
Score = 47.1 bits (113), Expect = 1e-08
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 87 HKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G + Y C CGK F R L KH R H
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLH 35
Score = 45.2 bits (108), Expect = 7e-08
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDA 71
K +NC C +FS L H R+H+GE+P +
Sbjct: 11 KLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSS 45
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.6 bits (161), Expect = 7e-16
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTH 101
TGE+PY+C CGK+F+ + L+ H+RIHSG +P +
Sbjct: 3 SGSSGTGEKPYECS--VCGKAFSHRQSLSVHQRIHSGKKPSGPSS 45
Score = 48.3 bits (116), Expect = 4e-09
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 86 RHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G +PY C+ CGK F + L H R H
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIH 35
Score = 43.3 bits (103), Expect = 4e-07
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKC 69
K + C C AFS+ L H RIH+G++P
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 65.6 bits (161), Expect = 7e-16
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTH 101
TGE+P+KC CGKS+ + LT+H+R+H+G +P +
Sbjct: 3 SGSSGTGEKPFKCG--ECGKSYNQRVHLTQHQRVHTGEKPSGPSS 45
Score = 49.1 bits (118), Expect = 2e-09
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 86 RHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G +P+ C CGK + ++ HL +H R H
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVH 35
Score = 43.3 bits (103), Expect = 3e-07
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDA 71
K F C C +++ L H R+HTGE+P +
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSS 45
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.6 bits (161), Expect = 8e-16
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTH 101
+GE+PY CD CGK+F + EL RH+RIH+G +P +
Sbjct: 3 SGSSGSGEKPYVCD--YCGKAFGLSAELVRHQRIHTGEKPSGPSS 45
Score = 49.0 bits (118), Expect = 2e-09
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 86 RHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
SG +PY C +CGK FG L +H R H
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIH 35
Score = 44.4 bits (106), Expect = 1e-07
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDA 71
K + C +C AF + +L H RIHTGE+P +
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSS 45
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.6 bits (161), Expect = 9e-16
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCT 100
TGE+P+KCD CGKSF L RH +H+ +P +
Sbjct: 3 SGSSGTGEKPFKCD--ICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 47.9 bits (115), Expect = 5e-09
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 87 HKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G +P+ C CGK F + L +H H
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVH 35
Score = 44.4 bits (106), Expect = 1e-07
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDA 71
K F C C +F +L H +HT E+P +
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSS 45
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.6 bits (161), Expect = 9e-16
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTH 101
TGE+PY+C+ CGK+F+ LT H+ IH+G +P +
Sbjct: 3 SGSSGTGEKPYECN--QCGKAFSVRSSLTTHQAIHTGKKPSGPSS 45
Score = 47.5 bits (114), Expect = 8e-09
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 86 RHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G +PY C CGK F + L H H
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIH 35
Score = 42.9 bits (102), Expect = 5e-07
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKC 69
K + C C AFS L H IHTG++P
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.6 bits (161), Expect = 9e-16
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTH 101
TGE+PYKC+ CGK+F++ +L RH+RIH+G +P +
Sbjct: 3 SGSSGTGEKPYKCN--ECGKAFSQTSKLARHQRIHTGEKPSGPSS 45
Score = 47.1 bits (113), Expect = 1e-08
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 86 RHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G +PY C CGK F + L +H R H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIH 35
Score = 43.7 bits (104), Expect = 2e-07
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDA 71
K + C C AFS +L H RIHTGE+P +
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSS 45
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.6 bits (161), Expect = 9e-16
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTH 101
TGE PY+C CGK+F+R +L H+R H+G +P +
Sbjct: 3 SGSSGTGENPYECH--ECGKAFSRKYQLISHQRTHAGEKPSGPSS 45
Score = 50.2 bits (121), Expect = 9e-10
Identities = 15/34 (44%), Positives = 16/34 (47%)
Query: 86 RHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G PY C CGK F RK L H RTH
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTH 35
Score = 43.3 bits (103), Expect = 3e-07
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDA 71
+ C C AFS QL H R H GE+P +
Sbjct: 11 NPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSS 45
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 65.6 bits (161), Expect = 9e-16
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCT 100
+ E+PYKC E+CGK + R L H+R+H G + +
Sbjct: 3 SGSSGSVEKPYKC--EDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
Score = 48.6 bits (117), Expect = 4e-09
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 87 HKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
S +PY C CGK + R+ +L H R H
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35
Score = 43.6 bits (104), Expect = 3e-07
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDA 71
K + C C ++ L H R+H GE+ +
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSS 45
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.2 bits (160), Expect = 1e-15
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCT 100
TGE+PYKCD C KSF LT H+RIH+G +P +
Sbjct: 3 SGSSGTGEKPYKCD--VCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 45.6 bits (109), Expect = 4e-08
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 87 HKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G +PY C C K F L H R H
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35
Score = 43.7 bits (104), Expect = 3e-07
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKC 69
K + C C+ +F L H RIHTGE+P
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.2 bits (160), Expect = 1e-15
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTH 101
TG +PY+C+ CGK+F++ +L RH+R+H+G +P +
Sbjct: 3 SGSSGTGGKPYQCN--ECGKAFSQTSKLARHQRVHTGEKPSGPSS 45
Score = 46.0 bits (110), Expect = 3e-08
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 87 HKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G +PY C CGK F + L +H R H
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVH 35
Score = 43.7 bits (104), Expect = 3e-07
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDA 71
K + C C AFS +L H R+HTGE+P +
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS 45
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 65.2 bits (160), Expect = 1e-15
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTH 101
TGE+PY+C CGK+F++ L +H+R+H+G +P +
Sbjct: 3 SGSSGTGEKPYECK--ECGKAFSQTTHLIQHQRVHTGEKPSGPSS 45
Score = 47.9 bits (115), Expect = 6e-09
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 86 RHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G +PY C CGK F + HL +H R H
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVH 35
Score = 44.4 bits (106), Expect = 1e-07
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDA 71
K + C C AFS L H R+HTGE+P +
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSS 45
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.2 bits (160), Expect = 1e-15
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTH 101
TGER Y+C CGK+F R L H+RIH+G +P +
Sbjct: 3 SGSSGTGERHYEC--SECGKAFARKSTLIMHQRIHTGEKPSGPSS 45
Score = 49.8 bits (120), Expect = 1e-09
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 86 RHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G R Y C+ CGK F RK L H R H
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIH 35
Score = 42.9 bits (102), Expect = 6e-07
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKC 69
+ + C C AF+ L H RIHTGE+P
Sbjct: 11 RHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.3 bits (160), Expect = 1e-15
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTH 101
TGE+PY+C CGKSFT+ +L H++IH+G +P +
Sbjct: 3 SGSSGTGEKPYECS--ICGKSFTKKSQLHVHQQIHTGEKPSGPSS 45
Score = 47.9 bits (115), Expect = 5e-09
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 86 RHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G +PY C+ CGK F +K L H + H
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIH 35
Score = 43.7 bits (104), Expect = 2e-07
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKC 69
K + C C +F+ QL H +IHTGE+P
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.2 bits (160), Expect = 1e-15
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTH 101
TG +PY C CGK+F+ LT H+ IH+G +P +
Sbjct: 3 SGSSGTGVKPYMC--NECGKAFSVYSSLTTHQVIHTGEKPSGPSS 45
Score = 47.1 bits (113), Expect = 1e-08
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 86 RHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G++PY C CGK F L H H
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIH 35
Score = 42.9 bits (102), Expect = 5e-07
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKC 69
K + C C AFS L H IHTGE+P
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.2 bits (160), Expect = 1e-15
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCT 100
TGE+PYKC CGK+F + LT H+ IH+G +P +
Sbjct: 3 SGSSGTGEKPYKC--NECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 46.0 bits (110), Expect = 3e-08
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 87 HKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G +PY C CGK F +L H H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIH 35
Score = 43.7 bits (104), Expect = 2e-07
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKC 69
K + C C AF + L H IHTGE+P
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.9 bits (159), Expect = 1e-15
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTH 101
TGE+PY+C +CGKSF + +L H+RIH+G P +
Sbjct: 3 SGSSGTGEKPYECS--DCGKSFIKKSQLHVHQRIHTGENPSGPSS 45
Score = 47.2 bits (113), Expect = 1e-08
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 87 HKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G +PY C+ CGK F +K L H R H
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIH 35
Score = 43.7 bits (104), Expect = 2e-07
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKC 69
K + C C +F QL H RIHTGE P
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.8 bits (159), Expect = 1e-15
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTH 101
TG + ++C CGK+FTR L+ H++IH+G +P +
Sbjct: 3 SGSSGTGGKHFECT--ECGKAFTRKSTLSMHQKIHTGEKPSGPSS 45
Score = 47.5 bits (114), Expect = 8e-09
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 86 RHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G + + CT CGK F RK L H + H
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIH 35
Score = 43.3 bits (103), Expect = 3e-07
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKC 69
K F C C AF+ L H +IHTGE+P
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.9 bits (159), Expect = 2e-15
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTH 101
TGE+P++C CGKSF+ N +L H+RIH+G P +
Sbjct: 3 SGSSGTGEKPHECR--ECGKSFSFNSQLIVHQRIHTGENPSGPSS 45
Score = 47.1 bits (113), Expect = 1e-08
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 86 RHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G +P+ C CGK F L H R H
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIH 35
Score = 43.7 bits (104), Expect = 3e-07
Identities = 16/35 (45%), Positives = 18/35 (51%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDA 71
K C C +FS N QL H RIHTGE P +
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSS 45
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 64.9 bits (159), Expect = 2e-15
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCT 100
TGE+PYKC E CGK F +L H +H+G +P +
Sbjct: 3 SGSSGTGEKPYKC--EECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 46.8 bits (112), Expect = 2e-08
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 87 HKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G +PY C CGK F + L H H
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVH 35
Score = 44.1 bits (105), Expect = 2e-07
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDA 71
K + C C F L H +HTGE+P +
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSS 45
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.9 bits (159), Expect = 2e-15
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCT 100
TGE+PY C E CGK+F + +L H+RIH+G +P +
Sbjct: 3 SGSSGTGEKPYNC--EECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 47.5 bits (114), Expect = 8e-09
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 86 RHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G +PY C CGK F L++H R H
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIH 35
Score = 44.8 bits (107), Expect = 8e-08
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDA 71
K +NC C AF ++ QL+ H RIHTGE+P +
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS 45
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.8 bits (159), Expect = 2e-15
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTH 101
TGE+PY+C CGK+FT L H++IH+G +P +
Sbjct: 3 SGSSGTGEKPYRC--AECGKAFTDRSNLFTHQKIHTGEKPSGPSS 45
Score = 46.3 bits (111), Expect = 2e-08
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 86 RHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G +PY C CGK F + +L H + H
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIH 35
Score = 44.0 bits (105), Expect = 2e-07
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKC 69
K + C C AF++ L H +IHTGE+P
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.5 bits (158), Expect = 2e-15
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTH 101
TGER Y+C CGK+F + L+ H+RIH G +P +
Sbjct: 3 SGSSGTGERHYECS--ECGKAFIQKSTLSMHQRIHRGEKPSGPSS 45
Score = 47.5 bits (114), Expect = 9e-09
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 87 HKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G R Y C+ CGK F +K L H R H
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIH 35
Score = 42.9 bits (102), Expect = 4e-07
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKC 69
+ + C C AF L H RIH GE+P
Sbjct: 11 RHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.4 bits (158), Expect = 2e-15
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCT 100
TGE+PYKC CGK F RN L RH+ IH+G +P +
Sbjct: 3 SGSSGTGEKPYKC--HECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 48.6 bits (117), Expect = 3e-09
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 86 RHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G +PY C CGK F R HL +H H
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIH 35
Score = 43.2 bits (103), Expect = 3e-07
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKC 69
K + C C F N L H IHTGE+P
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.5 bits (158), Expect = 2e-15
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCT 100
TGE+PY C+ CGKSF + L RH+RIH+G +P +
Sbjct: 3 SGSSGTGEKPYICN--ECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 49.4 bits (119), Expect = 2e-09
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 87 HKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G +PY C CGK F +K HL +H R H
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIH 35
Score = 43.3 bits (103), Expect = 4e-07
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKC 69
K + C C +F L H RIHTGE+P
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.5 bits (158), Expect = 2e-15
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCT 100
TGE+PYKC E CGK + L H+++H+G RP +
Sbjct: 3 SGSSGTGEKPYKC--EKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 47.1 bits (113), Expect = 1e-08
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 87 HKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G +PY C CGK + K +L H + H
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVH 35
Score = 43.3 bits (103), Expect = 4e-07
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKC 69
K + C C +++ L H ++HTGERP
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.4 bits (158), Expect = 2e-15
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCT 100
+GE+P+KC CGK+F +N L H RIH+G +P +
Sbjct: 3 SGSSGSGEKPFKCK--ECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 49.8 bits (120), Expect = 1e-09
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 86 RHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
SG +P+ C CGK F + HL HLR H
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIH 35
Score = 46.0 bits (110), Expect = 3e-08
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDA 71
K F C C AF N L H+RIHTGE+P +
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSS 45
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.5 bits (158), Expect = 3e-15
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCT 100
GE+ YKCD CGK F+++ L H+R+H+G +P +
Sbjct: 3 SGSSGMGEKCYKCD--VCGKEFSQSSHLQTHQRVHTGEKPSGPS 44
Score = 47.1 bits (113), Expect = 1e-08
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 87 HKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
G + Y C CGK+F + HL+ H R H
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVH 35
Score = 44.8 bits (107), Expect = 8e-08
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDA 71
K + C C FS + L+ H R+HTGE+P +
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS 45
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.4 bits (158), Expect = 3e-15
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTH 101
TGERPY C CGK+FT L +H++IH+G +P +
Sbjct: 3 SGSSGTGERPYICT--VCGKAFTDRSNLIKHQKIHTGEKPSGPSS 45
Score = 48.3 bits (116), Expect = 4e-09
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 86 RHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G RPY CT CGK F + +L KH + H
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIH 35
Score = 43.6 bits (104), Expect = 3e-07
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKC 69
+ + C C AF++ L H +IHTGE+P
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.5 bits (158), Expect = 3e-15
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTH 101
TGE+PYKC+ CGK F N L+RH+RIH+G +P +
Sbjct: 3 SGSSGTGEKPYKCN--ECGKVFRHNSYLSRHQRIHTGEKPSGPSS 45
Score = 47.5 bits (114), Expect = 1e-08
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 86 RHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G +PY C CGK F +L +H R H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIH 35
Score = 43.7 bits (104), Expect = 2e-07
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKC 69
K + C C F +N L H RIHTGE+P
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 64.1 bits (157), Expect = 3e-15
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCT 100
TGE+PY C + CGKSF L +H+R+HSG +P +
Sbjct: 3 SGSSGTGEKPYNC--KECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 48.3 bits (116), Expect = 5e-09
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 86 RHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G +PY C CGK F L KH R H
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVH 35
Score = 44.5 bits (106), Expect = 1e-07
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKC 69
K +NC C +F L H R+H+GE+P
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.1 bits (157), Expect = 3e-15
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCT 100
+GE+PYKC CGK + R +L H+R+H+G + +
Sbjct: 3 SGSSGSGEKPYKC--VECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 48.3 bits (116), Expect = 4e-09
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 87 HKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
SG +PY C CGK + R+ L H R H
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVH 35
Score = 44.8 bits (107), Expect = 8e-08
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDA 71
K + C C + L H R+HTGE+ +
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSS 45
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.7 bits (156), Expect = 4e-15
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCT 100
+GE+P+KC E CGK FT+N +L H+R+H+G +P +
Sbjct: 3 SGSSGSGEKPFKC--EECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
Score = 48.7 bits (117), Expect = 3e-09
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 86 RHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
SG +P+ C CGK+F + L H R H
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVH 35
Score = 44.8 bits (107), Expect = 8e-08
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDA 71
K F C C F+ N QL H R+HTGE+P +
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSS 45
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.7 bits (156), Expect = 4e-15
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 56 GHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCT 100
G++ +KC+ C K+FT++ LT H+RIH+G +P +
Sbjct: 2 SSGSSGAGKKLFKCN--ECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
Score = 45.6 bits (109), Expect = 5e-08
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 87 HKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G + + C C K F + L H R H
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIH 35
Score = 43.7 bits (104), Expect = 2e-07
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDA 71
K F C C F+ + L H RIHTGE+P +
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS 45
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.7 bits (156), Expect = 4e-15
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCT 100
TGE+PYKC+ CGK FT+N L H+RIH+G++P +
Sbjct: 3 SGSSGTGEKPYKCN--ECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 48.3 bits (116), Expect = 5e-09
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 86 RHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G +PY C CGK F + HL H R H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIH 35
Score = 44.4 bits (106), Expect = 1e-07
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDA 71
K + C C F+ N L H RIHTG +P +
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSS 45
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 63.7 bits (156), Expect = 4e-15
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCT 100
TG++P++C +CGKSF L H+RIH+G + P +
Sbjct: 3 SGSSGTGQKPFECT--HCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 49.5 bits (119), Expect = 1e-09
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 87 HKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G +P+ CTHCGK F K +L H R H
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIH 35
Score = 46.8 bits (112), Expect = 2e-08
Identities = 15/35 (42%), Positives = 17/35 (48%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDA 71
K F C HC +F G L H RIHTGE+
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSSG 45
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 6e-15
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCT 100
TGE+PYKC +CGKSFT L H++ H+G R +
Sbjct: 3 SGSSGTGEKPYKC--SDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
Score = 46.8 bits (112), Expect = 2e-08
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 87 HKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G +PY C+ CGK F K L+ H + H
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCH 35
Score = 43.7 bits (104), Expect = 3e-07
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKC 69
K + C C +F+ +L+ H + HTGER
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 7e-15
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCT 100
TGE+PYKC +CGK+FTR L H++ H+G R +
Sbjct: 3 SGSSGTGEKPYKCS--DCGKAFTRKSGLHIHQQSHTGERHSGPS 44
Score = 49.0 bits (118), Expect = 2e-09
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 86 RHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G +PY C+ CGK F RK L H ++H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSH 35
Score = 43.7 bits (104), Expect = 2e-07
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDA 71
K + C C AF+ L H + HTGER +
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPSS 45
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 7e-15
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCT 100
+GE+P++C+ CGK FT+N L H+R+H+G +P +
Sbjct: 3 SGSSGSGEKPFQCE--ECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 49.5 bits (119), Expect = 1e-09
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 86 RHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
SG +P+ C CGK+F + HL H R H
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVH 35
Score = 46.0 bits (110), Expect = 3e-08
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDA 71
K F C C F+ N L H R+HTGE+P +
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS 45
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 63.3 bits (155), Expect = 7e-15
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTHCG 103
+GE+P+KC E CGK F N + H+R HSG +P + G
Sbjct: 3 SGSSGSGEKPFKC--EECGKGFYTNSQCYSHQRSHSGEKPSGPS-SG 46
Score = 47.2 bits (113), Expect = 1e-08
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 87 HKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
SG +P+ C CGK F H R+H
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSH 35
Score = 44.9 bits (107), Expect = 8e-08
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCG 75
K F C C F N Q H R H+GE+P + G
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP---SSG 46
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 62.9 bits (154), Expect = 1e-14
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCT 100
TG+RPY+C CGK+F L H+R H+G +P +
Sbjct: 3 SGSSGTGQRPYECI--ECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 49.5 bits (119), Expect = 2e-09
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 86 RHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G RPY C CGK F K L H R+H
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSH 35
Score = 42.5 bits (101), Expect = 7e-07
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKC 69
+ + C C AF L H R HTGE+P
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.5 bits (153), Expect = 1e-14
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCT 100
TGE P+ C CGK FT L H++IH+G RP +
Sbjct: 3 SGSSGTGENPFICS--ECGKVFTHKTNLIIHQKIHTGERPSGPS 44
Score = 46.3 bits (111), Expect = 2e-08
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 87 HKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G P+ C+ CGK F K +L H + H
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIH 35
Score = 43.6 bits (104), Expect = 3e-07
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKC 69
F C C F++ L H +IHTGERP
Sbjct: 11 NPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.5 bits (153), Expect = 1e-14
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCT 100
TGE+P++C C K+F L H+R H+G +P +
Sbjct: 3 SGSSGTGEKPFECS--ECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 49.0 bits (118), Expect = 2e-09
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 86 RHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G +P+ C+ C K F K +L H RTH
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTH 35
Score = 44.0 bits (105), Expect = 2e-07
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDA 71
K F C C AF+ L H R HTGE+P +
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS 45
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.6 bits (153), Expect = 1e-14
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCT 100
GE+PY+C CGKSF+ + LT+H H+ +P +
Sbjct: 3 SGSSGEGEKPYQC--SECGKSFSGSYRLTQHWITHTREKPSGPS 44
Score = 44.8 bits (107), Expect = 9e-08
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 87 HKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
G +PY C+ CGK F L +H TH
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITH 35
Score = 43.3 bits (103), Expect = 4e-07
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDA 71
K + C C +FS + +L H HT E+P +
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSS 45
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.2 bits (152), Expect = 2e-14
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCT 100
TGE+PY+C C K+FT+ L +H++ H+G +P +
Sbjct: 3 SGSSGTGEKPYECK--VCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 51.0 bits (123), Expect = 4e-10
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 86 RHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G +PY C C K F +K HL +H +TH
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTH 35
Score = 44.1 bits (105), Expect = 2e-07
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKC 69
K + C C+ AF+ L H + HTGE+P
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.2 bits (152), Expect = 2e-14
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCT 100
GE+PY C CGK+F+ L H R HSG +P +
Sbjct: 3 SGSSGAGEKPYGCS--ECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 49.9 bits (120), Expect = 1e-09
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 86 RHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G +PY C+ CGK F K +L H+RTH
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTH 35
Score = 42.9 bits (102), Expect = 5e-07
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDA 71
K + C C AFS+ L H+R H+GE+P +
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSS 45
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 61.8 bits (151), Expect = 2e-14
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 56 GHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPY 97
G GE+PYKC E CG F + L H IH+G P
Sbjct: 1 GSSGSSGGEKPYKC--ETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 48.7 bits (117), Expect = 3e-09
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 87 HKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
G +PY C CG +F + HL+ H+ H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 43.7 bits (104), Expect = 3e-07
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPY 67
K + C C F L+ H+ IHTG P
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.8 bits (151), Expect = 2e-14
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCT 100
TGE+PYKC+ CGK+F L H+ HSG +P +
Sbjct: 3 SGSSGTGEKPYKCN--ECGKAFRARSSLAIHQATHSGEKPSGPS 44
Score = 47.9 bits (115), Expect = 7e-09
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 86 RHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G +PY C CGK F + L H TH
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATH 35
Score = 42.9 bits (102), Expect = 4e-07
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKC 69
K + C C AF L H H+GE+P
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.8 bits (151), Expect = 2e-14
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCT 100
+GE+PY C+ CGK+F++ L+ H+R H+G +P +
Sbjct: 3 SGSSGSGEKPYGCN--ECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 48.7 bits (117), Expect = 3e-09
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 87 HKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
SG +PY C CGK F +K L H RTH
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTH 35
Score = 42.1 bits (100), Expect = 1e-06
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKC 69
K + C C FS L H R HTGE+P
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 61.3 bits (150), Expect = 3e-14
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPC 99
TGE+PY+C+ C K+F L H+R H+G
Sbjct: 3 SGSSGTGEKPYECN--ECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 48.2 bits (116), Expect = 4e-09
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 87 HKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G +PY C C K F K +L H RTH
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTH 35
Score = 42.1 bits (100), Expect = 8e-07
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKC 69
K + C C AF+ L H R HTGE
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 61.4 bits (150), Expect = 3e-14
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 56 GHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPY 97
G GE+PY+CD CGK+F++ L H R+H+G P
Sbjct: 1 GSSGSSGGEKPYRCD--QCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 47.9 bits (115), Expect = 5e-09
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 87 HKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
G +PY C CGK F +K L H+R H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 41.4 bits (98), Expect = 2e-06
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPY 67
K + C C AFS G L HIR+HTG P
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 61.4 bits (150), Expect = 4e-14
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCT 100
TG +PY C C K+F+ +L H+R H+G++P +
Sbjct: 3 SGSSGTGVKPYGCS--QCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 49.1 bits (118), Expect = 2e-09
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 86 RHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G++PY C+ C K F K L H R+H
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSH 35
Score = 43.7 bits (104), Expect = 3e-07
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCG 75
K + C C FS QL H R HTG +P + G
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP---SSG 46
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 5e-14
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPC 99
+G++PY+C C K+F + L +HKR+H+G R
Sbjct: 3 SGSSGSGKKPYECK--ECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 46.8 bits (112), Expect = 1e-08
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 86 RHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
SG +PY C C K F + HL +H R H
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVH 35
Score = 44.1 bits (105), Expect = 2e-07
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKC 69
K + C C F G L H R+HTGER
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 5e-14
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCT 100
+GERP+KC+ CGK F R L H R+HS + +
Sbjct: 3 SGSSGSGERPFKCN--ECGKGFGRRSHLAGHLRLHSREKSSGPS 44
Score = 47.9 bits (115), Expect = 5e-09
Identities = 17/34 (50%), Positives = 19/34 (55%)
Query: 86 RHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
SG RP+ C CGK FGR+ HL HLR H
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLH 35
Score = 43.3 bits (103), Expect = 4e-07
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDA 71
+ F C C F L GH+R+H+ E+ +
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPSS 45
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 61.0 bits (149), Expect = 6e-14
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCT 100
GER ++C +CGK F + +H+RIH+G +P +
Sbjct: 3 SGSSGHGERGHRCS--DCGKFFLQASNFIQHRRIHTGEKPSGPS 44
Score = 45.2 bits (108), Expect = 7e-08
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 86 RHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
G R + C+ CGK F + + +H R H
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
Score = 40.2 bits (95), Expect = 5e-06
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKC 69
+ C C F H RIHTGE+P
Sbjct: 11 RGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 61.6 bits (149), Expect = 7e-14
Identities = 19/68 (27%), Positives = 24/68 (35%), Gaps = 9/68 (13%)
Query: 52 GQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTHCGKKFGRKDH 111
G +IH G+R KC CG F R L+R K C C K ++
Sbjct: 4 GSSGKRQKIHLGDRSQKC--SKCGIIFIRRSTLSRRK-------TPMCEKCRKDSCQEAA 54
Query: 112 LKKHLRTH 119
L K
Sbjct: 55 LNKDEGNE 62
Score = 45.0 bits (106), Expect = 2e-07
Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 9/61 (14%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
+ C C + F + + C E C K + L + + SG +
Sbjct: 17 RSQKCSKCGIIFI-------RRSTLSRRKTPMC--EKCRKDSCQEAALNKDEGNESGKKT 67
Query: 97 Y 97
Sbjct: 68 S 68
Score = 39.6 bits (92), Expect = 2e-05
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 80 RNEELTRHKRIHSGLRPYPCTHCGKKFGRKDHLKKH 115
+ + ++IH G R C+ CG F R+ L +
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR 37
Score = 29.6 bits (66), Expect = 0.084
Identities = 6/33 (18%), Positives = 9/33 (27%)
Query: 35 RPKKFNCPHCNVAFSNNGQLKGHIRIHTGERPY 67
R K C C L +G++
Sbjct: 36 RRKTPMCEKCRKDSCQEAALNKDEGNESGKKTS 68
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 60.2 bits (147), Expect = 9e-14
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPC 99
TG +PY C+ CGK+F L H R H+G
Sbjct: 3 SGSSGTGMKPYVCN--ECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 49.0 bits (118), Expect = 2e-09
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 86 RHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G++PY C CGK F K +L H RTH
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTH 35
Score = 41.7 bits (99), Expect = 1e-06
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKC 69
K + C C AF + L H R HTGE
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 60.3 bits (147), Expect = 9e-14
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPC 99
T + Y C CGK+FTR LTRH++IH+
Sbjct: 3 SGSSGTDSKSYNC--NECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 48.7 bits (117), Expect = 3e-09
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 87 HKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+ + Y C CGK F R HL +H + H
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIH 35
Score = 34.9 bits (81), Expect = 5e-04
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKC 69
K +NC C AF+ L H +IHT +
Sbjct: 11 KSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 60.2 bits (147), Expect = 1e-13
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 59 RIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPC 99
+GE PY+C CGK+F R ++L H+R H+G
Sbjct: 3 SGSSGENPYECS--ECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 44.8 bits (107), Expect = 7e-08
Identities = 17/32 (53%), Positives = 18/32 (56%)
Query: 88 KRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
SG PY C+ CGK F RKD L H RTH
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISHQRTH 33
Score = 42.9 bits (102), Expect = 4e-07
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKC 69
+ C C AF+ QL H R H GE
Sbjct: 9 NPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 60.3 bits (147), Expect = 1e-13
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCT 100
GE+ +KC C F++ L H+ +H G +P +
Sbjct: 3 SGSSGMGEKTWKC--RECDMCFSQASSLRLHQNVHVGEKPSGPS 44
Score = 45.2 bits (108), Expect = 7e-08
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKC 69
K + C C++ FS L+ H +H GE+P
Sbjct: 11 KTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 44.1 bits (105), Expect = 2e-07
Identities = 7/33 (21%), Positives = 11/33 (33%)
Query: 87 HKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
G + + C C F + L+ H H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVH 35
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 59.9 bits (146), Expect = 1e-13
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKR-IHSGLRPYPCT 100
TG++PY+C CGK+F +N L RH R H+G +P +
Sbjct: 3 SGSSGTGKKPYECI--ECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 43.7 bits (104), Expect = 3e-07
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 87 HKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRT 118
+G +PY C CGK F + L +H R
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRY 34
Score = 40.2 bits (95), Expect = 5e-06
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIR-IHTGERPYKCDA 71
K + C C AF N L H R HTGE+P +
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSS 46
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 44
Score = 59.9 bits (146), Expect = 1e-13
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPC 99
+GE+PY+C+ CGK+F L H+R H+G+
Sbjct: 3 SGSSGSGEKPYECN--ECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 48.7 bits (117), Expect = 3e-09
Identities = 15/34 (44%), Positives = 16/34 (47%)
Query: 86 RHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
SG +PY C CGK F K L H RTH
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTH 35
Score = 39.1 bits (92), Expect = 1e-05
Identities = 10/33 (30%), Positives = 11/33 (33%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKC 69
K + C C AF L H R H G
Sbjct: 11 KPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 59.5 bits (145), Expect = 2e-13
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCT 100
G PYKC C KSF+ L H+R+H+ +P +
Sbjct: 3 SGSSGAGVNPYKCS--QCEKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 45.6 bits (109), Expect = 5e-08
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKC 69
+ C C +FS +L H R+HT E+P
Sbjct: 11 NPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 45.2 bits (108), Expect = 7e-08
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 87 HKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G+ PY C+ C K F K L H R H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMH 35
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 59.5 bits (145), Expect = 2e-13
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTH 101
TGE+P++C + CG +F+ + L +H R H P +
Sbjct: 3 SGSSGTGEKPFQC--KECGMNFSWSCSLFKHLRSHERTDPSGPSS 45
Score = 48.7 bits (117), Expect = 3e-09
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 87 HKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G +P+ C CG F L KHLR+H
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSH 35
Score = 41.4 bits (98), Expect = 2e-06
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDA 71
K F C C + FS + L H+R H P +
Sbjct: 11 KPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPSS 45
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 59.4 bits (145), Expect = 2e-13
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPC 99
TGE PY+C CGK F+R ++L H++ HSG
Sbjct: 3 SGSSGTGENPYECC--ECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 47.1 bits (113), Expect = 1e-08
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 87 HKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G PY C CGK F RKD L H +TH
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTH 35
Score = 39.8 bits (94), Expect = 8e-06
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKC 69
+ C C FS QL H + H+G+
Sbjct: 11 NPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 2e-13
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCT 100
TGE+P KC CGK+F +L H+R H + +
Sbjct: 3 SGSSGTGEKPCKCT--ECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
Score = 45.2 bits (108), Expect = 6e-08
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 86 RHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G +P CT CGK F K L H RTH
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTH 35
Score = 42.9 bits (102), Expect = 5e-07
Identities = 10/35 (28%), Positives = 13/35 (37%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDA 71
K C C AF QL H R H ++ +
Sbjct: 11 KPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSS 45
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 58.7 bits (143), Expect = 4e-13
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCT 100
+ + ++C CG+ FT L +H+RIH+G +P +
Sbjct: 3 SGSSGSSTKSHQCH--ECGRGFTLKSHLNQHQRIHTGEKPSGPS 44
Score = 46.0 bits (110), Expect = 3e-08
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 86 RHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
S + + C CG+ F K HL +H R H
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
Score = 39.8 bits (94), Expect = 7e-06
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKC 69
K C C F+ L H RIHTGE+P
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 58.3 bits (142), Expect = 6e-13
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 56 GHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPY 97
G GE+PY C E CG F + L H RIH+G P
Sbjct: 1 GSSGSSGGEKPYPC--EICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 49.0 bits (118), Expect = 2e-09
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 87 HKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
G +PYPC CG +F LK HLR H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 45.2 bits (108), Expect = 6e-08
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPY 67
K + C C F + LK H+RIHTG P
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 57.9 bits (141), Expect = 7e-13
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 59 RIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCT 100
+GE+P+ C C K+F+ L H++ H+ +P +
Sbjct: 3 SGSSGEKPFGCS--CCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
Score = 44.4 bits (106), Expect = 1e-07
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDA 71
K F C C AFS+ L H + H E+P +
Sbjct: 9 KPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSS 43
Score = 43.7 bits (104), Expect = 2e-07
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 88 KRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
SG +P+ C+ C K F K +L H +TH
Sbjct: 2 SSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTH 33
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 56.4 bits (137), Expect = 3e-12
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCT 100
+GE+ + CD CGK+F L H+R+H G + +
Sbjct: 3 SGSSGSGEKSHTCD--ECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 43.3 bits (103), Expect = 3e-07
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 87 HKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
SG + + C CGK F L+ H R H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVH 35
Score = 35.6 bits (83), Expect = 3e-04
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDA 71
K C C F L+ H R+H GE+ +
Sbjct: 11 KSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSS 45
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 55.3 bits (134), Expect = 8e-12
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 59 RIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPY 97
+G+R Y+C CGKSF + LT H+RIH+G P
Sbjct: 3 SGSSGQRVYECQ--ECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 39.9 bits (94), Expect = 6e-06
Identities = 14/32 (43%), Positives = 15/32 (46%)
Query: 88 KRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
SG R Y C CGK F +K L H R H
Sbjct: 2 SSGSSGQRVYECQECGKSFRQKGSLTLHERIH 33
Score = 39.9 bits (94), Expect = 6e-06
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPY 67
+ + C C +F G L H RIHTG P
Sbjct: 9 RVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 56.1 bits (135), Expect = 1e-11
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Query: 34 QRPKKFNCPHCNVAFSNNGQLKGHI-RIHTGERP---YKCDAENC---GKSFTRNEELTR 86
+ C+ FS +L H+ H G + C E C GKSF +L
Sbjct: 21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVN 80
Query: 87 HKRIHSGLRPYPCT 100
H R+H+G + P +
Sbjct: 81 HIRVHTGEKSGPSS 94
Score = 53.0 bits (127), Expect = 2e-10
Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 11/69 (15%)
Query: 60 IHTGERPYKCDAENCGKSFTRNEELTRH-KRIHSGLRPYP--------CTHCGKKFGRKD 110
I + ++C ++F+ EL H H G C GK F K
Sbjct: 19 IDEAQLSRPK--KSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKY 76
Query: 111 HLKKHLRTH 119
L H+R H
Sbjct: 77 KLVNHIRVH 85
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 54.6 bits (132), Expect = 2e-11
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 56 GHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPY 97
G GE PY C CGKSFT+ L H+R S P
Sbjct: 1 GSSGSSGGETPYLCG--QCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 42.3 bits (100), Expect = 8e-07
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 87 HKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
G PY C CGK F ++ L H R+
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSC 34
Score = 38.4 bits (90), Expect = 2e-05
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYK 68
+ C C +F+ G L H R + P
Sbjct: 10 TPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 54.3 bits (131), Expect = 2e-11
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 87 HKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
R +G++P+ C C + F R DHL H + H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 48.1 bits (115), Expect = 5e-09
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 56 GHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIH 91
G R TG +P++C +C +SF+R++ L H++ H
Sbjct: 1 GSTRGSTGIKPFQC--PDCDRSFSRSDHLALHRKRH 34
Score = 28.8 bits (65), Expect = 0.086
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIH 61
K F CP C+ +FS + L H + H
Sbjct: 10 KPFQCPDCDRSFSRSDHLALHRKRH 34
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 54.0 bits (129), Expect = 4e-11
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 67 YKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
Y C E CG + L +H R H+ +RPY CT+C F K +L KH+++
Sbjct: 2 YIC--EECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 47.8 bits (113), Expect = 1e-08
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 38 KFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSG 93
K+ C C + LK HIR HT RPY C C SF LT+H + +
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCT--YCNFSFKTKGNLTKHMKSKAH 54
Score = 29.7 bits (66), Expect = 0.064
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 97 YPCTHCGKKFGRKDHLKKHLRTHFPQPRY 125
Y C CG + + LKKH+RTH Y
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPY 30
Score = 29.3 bits (65), Expect = 0.078
Identities = 8/43 (18%), Positives = 18/43 (41%)
Query: 23 KSHEQSMKAKNQRPKKFNCPHCNVAFSNNGQLKGHIRIHTGER 65
S + + + ++C +CN +F G L H++ +
Sbjct: 14 PSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 53.0 bits (128), Expect = 5e-11
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 65 RPYKCDAENCGKSFTRNEELTRHKRIHSGLR 95
RP+ C CGK FTR++EL RHKR H+G +
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 40.3 bits (95), Expect = 3e-06
Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Query: 95 RPYPCTH--CGKKFGRKDHLKKHLRTH 119
RP+ CT CGK+F R D L++H RTH
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
Score = 31.0 bits (71), Expect = 0.012
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 37 KKFNC--PHCNVAFSNNGQLKGHIRIHTGER 65
+ F C +C F+ + +L+ H R HTGE+
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 55.2 bits (132), Expect = 6e-11
Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 3/86 (3%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRI--HTGERPYKCDAEN-CGKSFTRNEELTRHKRIHSG 93
KF C C+ A+ +L H+ H + ++ D N S R L +
Sbjct: 18 SKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDA 77
Query: 94 LRPYPCTHCGKKFGRKDHLKKHLRTH 119
+ C +CG F L H+
Sbjct: 78 QKVLKCMYCGHSFESLQDLSVHMIKT 103
Score = 52.5 bits (125), Expect = 6e-10
Identities = 15/79 (18%), Positives = 24/79 (30%), Gaps = 7/79 (8%)
Query: 49 SNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRI-----HSGLRPYPCTHCG 103
S+ K + I TG ++C ++C ++ ELT H
Sbjct: 2 SSGSSGKLYGSIFTGASKFRC--KDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKR 59
Query: 104 KKFGRKDHLKKHLRTHFPQ 122
RK L + Q
Sbjct: 60 WSKPRKRSLLEMEGKEDAQ 78
Score = 25.5 bits (55), Expect = 4.7
Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 23 KSHEQSMKAKNQRPKKFNCPHCNVAFSNNGQLKGHI--RIHTGERPYK 68
K M+ K K C +C +F + L H+ H +
Sbjct: 65 KRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGP 112
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 51.9 bits (125), Expect = 2e-10
Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 59 RIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPC 99
+GE+PY C C ++F+ N L +H+++H+
Sbjct: 3 SGSSGEKPYSC--AECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 42.3 bits (100), Expect = 8e-07
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 88 KRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
SG +PY C C + F + L +H + H
Sbjct: 2 SSGSSGEKPYSCAECKETFSDNNRLVQHQKMH 33
Score = 36.9 bits (86), Expect = 8e-05
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKC 69
K ++C C FS+N +L H ++HT +
Sbjct: 9 KPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 44.6 bits (105), Expect = 9e-08
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIHS 92
+RPY CD C K+F RN +L RHK+ H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
Score = 28.8 bits (64), Expect = 0.071
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 95 RPYPCTH--CGKKFGRKDHLKKHLRTH 119
RPY C H C K F R L +H ++H
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSH 28
Score = 23.8 bits (51), Expect = 4.8
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 35 RPKKFNCPHCNVAFSNNGQLKGHIRIHT 62
RP + P C+ AF N L H + H
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 44.9 bits (106), Expect = 1e-07
Identities = 14/44 (31%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 59 RIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTHC 102
+ C+ CGK F L RHK HSG +PY
Sbjct: 5 SSGRTRKQVACEI--CGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 40.3 bits (94), Expect = 5e-06
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 28 SMKAKNQRPKKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKC 69
S + + K+ C C F + L H H+GE+PY
Sbjct: 2 SSGSSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSS 43
Score = 36.1 bits (83), Expect = 2e-04
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 89 RIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+ C CGK F HL +H +H
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSH 35
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 44.1 bits (104), Expect = 2e-07
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 57 HIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSG 93
GE P+KC C + FT+ L +H+R H+
Sbjct: 3 SGSSGAGENPFKCS--KCDRVFTQRNYLVQHERTHAR 37
Score = 42.2 bits (99), Expect = 1e-06
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 86 RHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+G P+ C+ C + F ++++L +H RTH
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTH 35
Score = 31.0 bits (70), Expect = 0.014
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGERP 66
F C C+ F+ L H R H +
Sbjct: 11 NPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 45.7 bits (107), Expect = 3e-07
Identities = 13/76 (17%), Positives = 21/76 (27%), Gaps = 4/76 (5%)
Query: 44 CNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTHCG 103
N + + + C C F+ + L +H R C C
Sbjct: 52 HNPQLLDESSYLYRLLASKAISQFVC--PLCLMPFSSSVSLKQHIRYTE--HTKVCPVCK 107
Query: 104 KKFGRKDHLKKHLRTH 119
K+F D H+
Sbjct: 108 KEFTSTDSALDHVCKK 123
Score = 39.9 bits (92), Expect = 4e-05
Identities = 12/87 (13%), Positives = 22/87 (25%), Gaps = 4/87 (4%)
Query: 37 KKFNCPHCNVAFSNNGQ--LKGHIRIHTGERPYKCD--AENCGKSFTRNEELTRHKRIHS 92
KK+ H + + + H +R +
Sbjct: 11 KKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASK 70
Query: 93 GLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+ + C C F LK+H+R
Sbjct: 71 AISQFVCPLCLMPFSSSVSLKQHIRYT 97
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 43.4 bits (101), Expect = 1e-06
Identities = 16/88 (18%), Positives = 28/88 (31%), Gaps = 5/88 (5%)
Query: 28 SMKAKNQRPKKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRH 87
S + + + + C CN S+ + H R+ C C F E H
Sbjct: 6 SGASPVENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVC--PYCSLRFFSPELKQEH 61
Query: 88 KRIHSGLRPYPCTHCGKKFGRKDHLKKH 115
+ + C C + F + +H
Sbjct: 62 ES-KCEYKKLTCLECMRTFKSSFSIWRH 88
Score = 35.6 bits (81), Expect = 9e-04
Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 4/57 (7%)
Query: 63 GERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+ Y+C C + E H+R+ C +C +F + ++H
Sbjct: 13 NKEVYQCRL--CNAKLSSLLEQGSHERLCR--NAAVCPYCSLRFFSPELKQEHESKC 65
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 40.4 bits (95), Expect = 4e-06
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 95 RPYPCTHCGKKFGRKDHLKKHLRTH 119
R + C C + F R++HLK+H R+H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
Score = 34.6 bits (80), Expect = 6e-04
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 65 RPYKCDAENCGKSFTRNEELTRHKRIHSG 93
R + C+ C ++F R E L RH R H+
Sbjct: 1 RSFVCEV--CTRAFARQEHLKRHYRSHTN 27
Score = 33.4 bits (77), Expect = 0.001
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGER 65
+ F C C AF+ LK H R HT E+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 38.5 bits (90), Expect = 2e-05
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 62 TGERPYKCDAENCGKSFTRNEELTRHKRIHSGLR 95
++ + C + CGK + + L H R H+G R
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 35.8 bits (83), Expect = 2e-04
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 95 RPYPCTH--CGKKFGRKDHLKKHLRTH 119
+ + C CGK +G+ HL+ HLR H
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWH 33
Score = 31.9 bits (73), Expect = 0.006
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 34 QRPKKFNCPH--CNVAFSNNGQLKGHIRIHTGER 65
+ K+ C C + L+ H+R HTGER
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 40.6 bits (94), Expect = 6e-05
Identities = 8/59 (13%), Positives = 14/59 (23%), Gaps = 2/59 (3%)
Query: 34 QRPKKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHS 92
+ + S + G + Y+C C +L H H
Sbjct: 148 KPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHV--CSAVLFSPLDLDAHVASHG 204
Score = 40.6 bits (94), Expect = 7e-05
Identities = 9/49 (18%), Positives = 14/49 (28%)
Query: 71 AENCGKSFTRNEELTRHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
AE +++ S Y C C L H+ +H
Sbjct: 155 AEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 37.5 bits (86), Expect = 7e-04
Identities = 5/39 (12%), Positives = 10/39 (25%)
Query: 23 KSHEQSMKAKNQRPKKFNCPHCNVAFSNNGQLKGHIRIH 61
+ + C C+ + L H+ H
Sbjct: 165 HPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 35.2 bits (81), Expect = 4e-04
Identities = 8/27 (29%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 95 RPYPCTH--CGKKFGRKDHLKKHLRTH 119
+ + C C K F R+ +++ H++TH
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQTH 43
Score = 33.7 bits (77), Expect = 0.002
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 56 GHIRIHTGERP---YKCDAENCGKSFTRNEELTRHKRIHSGLR 95
G I + E P ++C C K+F R + H + H R
Sbjct: 5 GSIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 28.7 bits (64), Expect = 0.13
Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 2/43 (4%)
Query: 25 HEQSMKAKNQRPKKFNCPH--CNVAFSNNGQLKGHIRIHTGER 65
K K F C C F ++ HI+ H +R
Sbjct: 5 GSIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 34.9 bits (80), Expect = 4e-04
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 97 YPCTHCGKKFGRKDHLKKHLRTHF 120
+ C C K+F R DHL KH+ H
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHE 26
Score = 25.3 bits (55), Expect = 1.4
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 38 KFNCPHCNVAFSNNGQLKGHIRIHTGERPYK 68
KF CP C F + L HI +H +
Sbjct: 2 KFACPECPKRFMRSDHLSKHITLHELLGEER 32
Score = 24.9 bits (54), Expect = 2.3
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 67 YKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
YK C K F R++ L++H +H L
Sbjct: 1 YKFACPECPKRFMRSDHLSKHITLHELLGE 30
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 34.9 bits (79), Expect = 5e-04
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 91 HSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
SG +PY C CG +F RKD + H+R+H
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSH 33
Score = 33.0 bits (74), Expect = 0.003
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 61 HTGERPYKCDAENCGKSFTRNEELTRHKRIHSG 93
+GE+PY C CG F R + ++ H R H G
Sbjct: 5 SSGEKPYSCPV--CGLRFKRKDRMSYHVRSHDG 35
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 34.7 bits (79), Expect = 6e-04
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 97 YPCTHCGKKFGRKDHLKKHLRTHF 120
+ C C K+F R D L KH++T F
Sbjct: 3 FACPACPKRFMRSDALSKHIKTAF 26
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 35.9 bits (82), Expect = 7e-04
Identities = 14/84 (16%), Positives = 24/84 (28%), Gaps = 7/84 (8%)
Query: 22 FKSHEQSMKAKNQRPKKFNCPHCNVAFSNNGQLKGHIRI-HTGER---PYKCDAENCGKS 77
H + + + C +C + H+ H Y C C
Sbjct: 2 AHHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVE--CNFL 59
Query: 78 FTRNEELTRH-KRIHSGLRPYPCT 100
R + L+ H + H G + T
Sbjct: 60 TKRYDALSEHNLKYHPGEENFKLT 83
Score = 26.7 bits (58), Expect = 1.5
Identities = 13/53 (24%), Positives = 16/53 (30%), Gaps = 1/53 (1%)
Query: 19 LEYFKSHEQSMKAKNQRPKKFNCPHCNVAFSNNGQLKGHI-RIHTGERPYKCD 70
L F H S + C CN L H + H GE +K
Sbjct: 31 LNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLT 83
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 34.5 bits (79), Expect = 7e-04
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 97 YPCTHCGKKFGRKDHLKKHLRTH 119
+ C C K+F R DHL H+ H
Sbjct: 3 FACPECPKRFMRSDHLTLHILLH 25
Score = 24.9 bits (54), Expect = 2.3
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 38 KFNCPHCNVAFSNNGQLKGHIRIHTGER 65
KF CP C F + L HI +H ++
Sbjct: 2 KFACPECPKRFMRSDHLTLHILLHENKK 29
Score = 23.7 bits (51), Expect = 5.7
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 67 YKCDAENCGKSFTRNEELTRHKRIHSGLR 95
YK C K F R++ LT H +H +
Sbjct: 1 YKFACPECPKRFMRSDHLTLHILLHENKK 29
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, classical zinc finger, transcription; NMR {Homo
sapiens}
Length = 30
Score = 34.0 bits (77), Expect = 9e-04
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGER 65
K + C HC F++ G L+ H+RIHTGE+
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 31.3 bits (70), Expect = 0.011
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 94 LRPYPCTHCGKKFGRKDHLKKHLRTH 119
++PY C HC ++F L++H+R H
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIH 26
Score = 26.6 bits (58), Expect = 0.51
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 65 RPYKCDAENCGKSFTRNEELTRHKRIHSG 93
+PY C +C + F L RH RIH+G
Sbjct: 2 KPYVC--IHCQRQFADPGALQRHVRIHTG 28
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA
binding protein; NMR {Escherichia coli} SCOP: k.12.1.1
PDB: 2ab7_A
Length = 29
Score = 33.9 bits (77), Expect = 0.001
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 67 YKCDAENCGKSFTRNEELTRHKRIHSG 93
Y C ENCG+SF +L RHK+IH+G
Sbjct: 3 YVCHFENCGRSFNDRRKLNRHKKIHTG 29
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation
domain, Zn finger, DNA-binding regulatory protein; NMR
{Homo sapiens} SCOP: g.37.1.1
Length = 38
Score = 32.3 bits (73), Expect = 0.005
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 64 ERPYKCDAENCGKSFTRNEELTRHKRIH 91
++P+ C A CG+ FT + L HK H
Sbjct: 4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH 31
Score = 25.4 bits (55), Expect = 1.7
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 95 RPYPCTH--CGKKFGRKDHLKKHLRTH 119
+P+ CT CG++F +DHL H H
Sbjct: 5 KPFLCTAPGCGQRFTNEDHLAVHKHKH 31
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 34.8 bits (79), Expect = 0.005
Identities = 12/85 (14%), Positives = 28/85 (32%), Gaps = 3/85 (3%)
Query: 40 NCPHCNV-AFSNNGQL--KGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRP 96
N+ AF ++ ++ + I GE +E+ K + T H+ + G +
Sbjct: 149 EEREQNLLAFQHSERIYFRACRDIRPGEWLRVWYSEDYMKRLHSMSQETIHRNLARGEKR 208
Query: 97 YPCTHCGKKFGRKDHLKKHLRTHFP 121
+ + L+ +
Sbjct: 209 LQREKSEQVLDNPEDLRGPIHLSVL 233
Score = 29.8 bits (66), Expect = 0.27
Identities = 9/55 (16%), Positives = 16/55 (29%), Gaps = 3/55 (5%)
Query: 11 DPYWSNLALEYFKSHEQSMKAKNQRPKKFNCPHCNVAFSNNGQLKGHIRIHTGER 65
+ Y L S E + + K+ N L+G I + +
Sbjct: 184 EDYMKRLH---SMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding
protein, DNA deadenylas hydrolase; 1.80A
{Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*
Length = 204
Score = 33.9 bits (77), Expect = 0.008
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 82 EELTRHKRIHSGL-RPYPCTHCGKKFGRK-DHLKKHLRTHF 120
L + S C CG+ FGR LK HL+ +
Sbjct: 154 SNLPTRGTLTSLFQEDLKCWRCGETFGRHFTKLKAHLQEEY 194
Score = 26.6 bits (58), Expect = 3.1
Identities = 6/22 (27%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 41 CPHCNVAFSNN-GQLKGHIRIH 61
C C F + +LK H++
Sbjct: 172 CWRCGETFGRHFTKLKAHLQEE 193
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 31.7 bits (71), Expect = 0.009
Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 61 HTGERPYKCDAENCGKSFTRNEELTRHKRIHS 92
E+ +KC+ C K+F+ ++ LT+H+RIH+
Sbjct: 7 GQKEKCFKCN--KCEKTFSCSKYLTQHERIHT 36
Score = 26.7 bits (58), Expect = 0.58
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 91 HSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
+ + C C K F +L +H R H
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIH 35
Score = 24.4 bits (52), Expect = 4.2
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 28 SMKAKNQRPKKFNCPHCNVAFSNNGQLKGHIRIHT 62
S + Q+ K F C C FS + L H RIHT
Sbjct: 2 SSGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 30.2 bits (67), Expect = 0.027
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGER 65
K F C +CN F L+ H+RIHT E+
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 27.1 bits (59), Expect = 0.32
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 92 SGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
S + + C +C K F K L+ HLR H
Sbjct: 5 SSGKIFTCEYCNKVFKFKHSLQAHLRIH 32
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 29.7 bits (66), Expect = 0.044
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 91 HSGLRPYPCTHCGKKFGRKDHLKKHLRTH 119
SG RP+ C C F K + +HL+ H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 28.6 bits (63), Expect = 0.11
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 61 HTGERPYKCDAENCGKSFTRNEELTRHKRIHS 92
+G+RP+ C C +FT RH ++H+
Sbjct: 2 SSGKRPFVC--RICLSAFTTKANCARHLKVHT 31
Score = 23.6 bits (50), Expect = 7.7
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 34 QRPKKFNCPHCNVAFSNNGQLKGHIRIHT 62
+RP F C C AF+ H+++HT
Sbjct: 5 KRP--FVCRICLSAFTTKANCARHLKVHT 31
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 29.4 bits (65), Expect = 0.050
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 94 LRPYPCTHCGKKFGRKDHLKKHLRTH 119
+RPY C+ CGK+F K ++ H R H
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVH 26
Score = 25.9 bits (56), Expect = 0.77
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 65 RPYKCDAENCGKSFTRNEELTRHKRIHSG 93
RPY C CGK F+ ++ H R+H+G
Sbjct: 2 RPYSCSV--CGKRFSLKHQMETHYRVHTG 28
Score = 24.0 bits (51), Expect = 4.3
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTG 63
+ ++C C FS Q++ H R+HTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 29.4 bits (65), Expect = 0.055
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 31 AKNQRPKKFNCPHCNVAFSNNGQLKGHIRIHTGER 65
+ K + CP C+ A + L H+R HTGE+
Sbjct: 2 SSGSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 25.2 bits (54), Expect = 1.6
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 95 RPYPCTHCGKKFGRKDHLKKHLRTH 119
+PY C C K +L HLR H
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKH 32
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain
associated with ring and TRAF domains protein 1,
malignant 62; NMR {Homo sapiens}
Length = 76
Score = 29.5 bits (66), Expect = 0.11
Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 2/47 (4%)
Query: 72 ENCGKSFTRNEELTRHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRT 118
C +R + L H + R C CG F + + H
Sbjct: 21 NRCPMKLSRRD-LPAHLQHDCPKRRLKCEFCGCDFSGEA-YESHEGM 65
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 29.8 bits (66), Expect = 0.11
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 82 EELTRHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRT-HFPQP 123
E L +H + C HCGK+ +K H+ H P
Sbjct: 49 EGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLP 90
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 28.3 bits (63), Expect = 0.12
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 95 RPYPCTHCGKKFGRKDHLKKHLRT 118
+ Y C C + F R+D L +H +
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQK 24
Score = 24.8 bits (54), Expect = 1.9
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Query: 65 RPYKCDAENCGKSFTRNEELTRH-KRIHSG 93
+ Y C C ++FTR + L RH ++IHSG
Sbjct: 1 KAYACGL--CNRAFTRRDLLIRHAQKIHSG 28
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 29.5 bits (65), Expect = 0.13
Identities = 10/38 (26%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 82 EELTRH-KRIHSGLRPYPCTHCGKKFGRKDHLKKHLRT 118
L +H + C HC K+F K L H
Sbjct: 39 VGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMA 76
Score = 24.5 bits (52), Expect = 8.1
Identities = 11/49 (22%), Positives = 17/49 (34%)
Query: 29 MKAKNQRPKKFNCPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKS 77
M+ + C HC F + L H +P +A G+S
Sbjct: 45 MEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPSDAEASEGGES 93
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 26
Score = 27.4 bits (60), Expect = 0.21
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 95 RPYPCTHCGKKFGRKDHLKKHLRTH 119
+PY C CGK+F + L H+R H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
Score = 23.5 bits (50), Expect = 6.8
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 65 RPYKCDAENCGKSFTRNEELTRHKRIH 91
+PY C+ CGK F ++ +L H R H
Sbjct: 1 KPYVCE--RCGKRFVQSSQLANHIRHH 25
>1njq_A Superman protein; zinc-finger, peptide-zinc complex,
beta-BETA-ALFA motif, metal binding protein; NMR
{Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 27.8 bits (62), Expect = 0.22
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 36 PKKFNCPHCNVAFSNNGQLKGHIRIHTGER 65
P+ + C C F + L GH+ +H +R
Sbjct: 4 PRSYTCSFCKREFRSAQALGGHMNVHRRDR 33
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 27.2 bits (59), Expect = 0.39
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 63 GERPYKCDAENCGKSFTRNEELTRHKRIHSG 93
+ +C + CGK F + L H+ +H+G
Sbjct: 9 AKTTSEC--QECGKIFRHSSLLIEHQALHAG 37
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 28.0 bits (62), Expect = 0.40
Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 54 LKGHIRIHTGERPYKCDAENCGKSFTRNEELTRHKRIHSGLRPYPCTHCGKKFGRKDHLK 113
GH R C ++C + + L H+ + G R C +CG+ KD LK
Sbjct: 5 SSGHEETECPLRLAVC--QHCDLELSILK-LKEHED-YCGARTELCGNCGRNVLVKD-LK 59
Query: 114 KHLRTH 119
H
Sbjct: 60 THPEVC 65
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 27.1 bits (59), Expect = 0.44
Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 62 TGERPYKCDAENCGKSFTRNEELTRHKRIHSG 93
+ E+ ++C CG+ F + L H+ +H G
Sbjct: 8 SREKSHQC--RECGEIFFQYVSLIEHQVLHMG 37
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 29.4 bits (65), Expect = 0.46
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 31 AKNQRPKKFNCPHCNVAFSNNGQLKGHIR 59
P + C CN FS L H+R
Sbjct: 109 TPIVNPSSYVCNVCNARFSTMSALSEHLR 137
Score = 27.5 bits (60), Expect = 2.1
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 97 YPCTHCGKKFGRKDHLKKHLRT 118
Y C C +F L +HLR+
Sbjct: 117 YVCNVCNARFSTMSALSEHLRS 138
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 0.48
Identities = 24/134 (17%), Positives = 36/134 (26%), Gaps = 53/134 (39%)
Query: 10 LDPYWSNLA---LEYF--KSHEQSMKAKNQRPKKFNCPHCNVAFSNNGQLKGHIRIHTGE 64
L W ++ + K H+ S+ K PK+ I I +
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQ--PKES-----------------TISIPSIY 432
Query: 65 RPYKCDAENCGKSFTRNEELTRHKRIHSGLRPY--PCTHCGKKFGRKDHLKKHLRTHFPQ 122
K EN E H+ I + Y P T
Sbjct: 433 LELKVKLEN---------EYALHRSI---VDHYNIPKTFDSDDLI--------------- 465
Query: 123 PRYVSCYPYMYGGY 136
P Y+ Y Y + G+
Sbjct: 466 PPYLDQYFYSHIGH 479
Score = 26.4 bits (57), Expect = 4.0
Identities = 8/60 (13%), Positives = 17/60 (28%), Gaps = 3/60 (5%)
Query: 73 NCGKSFTRNEELTRHKRIHSGLRPYPCTHCGKKFG---RKDHLKKHLRTHFPQPRYVSCY 129
N + L +++ + P + R ++ LR Y +C
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2
zinc fingers, beta-BETA-alpha, solution structure; NMR
{Saccharomyces cerevisiae}
Length = 64
Score = 27.3 bits (60), Expect = 0.54
Identities = 11/62 (17%), Positives = 19/62 (30%), Gaps = 9/62 (14%)
Query: 67 YKCDAENCGKSFTRNEELTRH-------KRIHSGLRPYPC--THCGKKFGRKDHLKKHLR 117
KC + C +S + +L RH + + P C C + H+
Sbjct: 2 LKCKWKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHIN 61
Query: 118 TH 119
Sbjct: 62 AQ 63
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 28.1 bits (62), Expect = 0.78
Identities = 22/98 (22%), Positives = 30/98 (30%), Gaps = 5/98 (5%)
Query: 32 KNQRPKKFNCPHCNVAFSNNGQLKGHIRIHT-GERPYKCDAENCGKSFTRNEELTRHKRI 90
K+ R CP N N + KC E C +
Sbjct: 47 KSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRH--LEDHQA 104
Query: 91 HSGLRPYPCTHCGKKFGRKDHLKKHLRTHFPQPRYVSC 128
H C C + F +K H+ H+ P+ R VSC
Sbjct: 105 HCEFALMDCPQCQRPF-QKFHINIHILKDCPR-RQVSC 140
Score = 27.0 bits (59), Expect = 2.0
Identities = 8/46 (17%), Positives = 15/46 (32%), Gaps = 2/46 (4%)
Query: 73 NCGKSFTRNEELTRHKRIHSGLRPYPCTHCGKKFGRKDHLKKHLRT 118
C + F + + H R C +C +D + H +
Sbjct: 115 QCQRPFQKFH-INIHILKDCPRRQVSCDNCAASMAFED-KEIHDQN 158
>3dtz_A Putative chlorite dismutase TA0507; putatvie chlorite dismutase
TA0507 thermoplasma acidophilum, structural genomics,
PSI-2; HET: MSE; 1.81A {Thermoplasma acidophilum}
Length = 244
Score = 27.6 bits (61), Expect = 1.5
Identities = 3/40 (7%), Positives = 15/40 (37%), Gaps = 4/40 (10%)
Query: 6 LGGSLDPYWSNLAL----EYFKSHEQSMKAKNQRPKKFNC 41
+ +S++++ Y +++ + P ++
Sbjct: 102 MRPIAVSSFSSISIYDESPYNAMNKKLEDSLRLPPLRYFV 141
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, transcription; NMR {Homo sapiens}
Length = 29
Score = 25.1 bits (54), Expect = 1.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 41 CPHCNVAFSNNGQLKGHIRIHTGER 65
C C AF+ L H+R HTGE+
Sbjct: 5 CVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 24.0 bits (51), Expect = 4.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 69 CDAENCGKSFTRNEELTRHKRIHSG 93
C CGK+FT+ L H R H+G
Sbjct: 3 CQCVMCGKAFTQASSLIAHVRQHTG 27
Score = 23.6 bits (50), Expect = 6.9
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 95 RPYPCTHCGKKFGRKDHLKKHLRTH 119
+P C CGK F + L H+R H
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQH 25
>3p2h_A AHL synthase; acyl-ACP binding, SAM binding, signaling protein-I
MTA complex, signaling protein-inhibitor complex; HET:
MTA NOO; 2.00A {Burkholderia glumae} PDB: 3p2f_A*
Length = 201
Score = 26.8 bits (59), Expect = 2.0
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 41 CPHCNVAFSNNGQLKGHIRIHTGERPY 67
+ NG++ G R+ RPY
Sbjct: 51 DTVYVLGRDANGEICGCARLLPTTRPY 77
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 2.0
Identities = 3/12 (25%), Positives = 7/12 (58%), Gaps = 1/12 (8%)
Query: 88 KRIHSGLRPY-P 98
K++ + L+ Y
Sbjct: 23 KKLQASLKLYAD 34
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction,
transcription; NMR {Drosophila melanogaster} SCOP:
g.37.1.2 PDB: 1y0j_B 2l6z_B
Length = 36
Score = 25.1 bits (54), Expect = 2.1
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 35 RPKKFNCPHCNVAFSNNGQLKGHIRIHTGER 65
+P +F C C +AFS+ L+ H + R
Sbjct: 5 KPARFMCLPCGIAFSSPSTLEAHQAYYCSHR 35
>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type
zinc finger, KIAA0530, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.37.1.1
Length = 73
Score = 25.7 bits (55), Expect = 2.3
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 61 HTGERPYKCDAENCGKSFTRNEELTRHKR-IHSGLRPYPCTHCGK 104
++ RPY+C + C +FT + L H + +H P +
Sbjct: 22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAEVEE 66
>2hpu_A NOSL protein; alpha beta topology, metal transport; NMR
{Achromobacter cycloclastes} SCOP: d.357.1.1 PDB:
2hq3_A
Length = 175
Score = 26.2 bits (57), Expect = 3.2
Identities = 6/43 (13%), Positives = 12/43 (27%)
Query: 41 CPHCNVAFSNNGQLKGHIRIHTGERPYKCDAENCGKSFTRNEE 83
+C + + K I + P ++ R E
Sbjct: 21 GHYCQMNLLEHPGPKAQIFLEGSPAPLFFSQVRDAIAYARGPE 63
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI,
protein structure initiative, center for eukaryotic
structural genomics, CESG; NMR {Homo sapiens} SCOP:
g.37.1.4
Length = 124
Score = 25.8 bits (56), Expect = 3.5
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 93 GLRPYPCTHCGKKFGRKDHLKKHLRT 118
G + C C + F +LK H R+
Sbjct: 47 GGGLHRCLACARYFIDSTNLKTHFRS 72
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 24.4 bits (52), Expect = 4.1
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 95 RPYPCTHCGKKFGRKDHLKKHLRTHFPQ 122
R Y C C K F +K H++T+ P+
Sbjct: 8 RSYSCPVCEKSFSEDRLIKSHIKTNHPE 35
Score = 24.1 bits (51), Expect = 4.5
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 37 KKFNCPHCNVAFSNNGQLKGHIRIHTGE 64
+ ++CP C +FS + +K HI+ + E
Sbjct: 8 RSYSCPVCEKSFSEDRLIKSHIKTNHPE 35
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 24.0 bits (51), Expect = 4.7
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 67 YKCDAENCGKSFTRNEELTRHKRIHS 92
YKC C +SF L+RH+R+H
Sbjct: 2 YKCGL--CERSFVEKSALSRHQRVHK 25
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL
protein structure initiative, midwest center for
structural genomics, MCSG; 2.98A {Veillonella parvula}
Length = 349
Score = 26.1 bits (58), Expect = 4.9
Identities = 5/30 (16%), Positives = 10/30 (33%)
Query: 84 LTRHKRIHSGLRPYPCTHCGKKFGRKDHLK 113
H + + Y KK ++ + K
Sbjct: 298 YQAHAIVLETMDSYEIGKSMKKIIKEGNYK 327
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB:
3tii_A* 3tin_A*
Length = 380
Score = 25.7 bits (56), Expect = 5.6
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 104 KKFGRKDHLKKHLRTHFPQPRYVSCYPYMYGGY 136
K RK L K ++T + +P Y Y
Sbjct: 72 DKLCRKASLVKLIKTSPELTETCTWFPESYVIY 104
>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1
Length = 88
Score = 24.8 bits (53), Expect = 6.2
Identities = 9/23 (39%), Positives = 9/23 (39%)
Query: 97 YPCTHCGKKFGRKDHLKKHLRTH 119
Y C HC K L HL H
Sbjct: 26 YQCKHCDSKLQSTAELTSHLNIH 48
>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase;
UDP-N-acetylglucosamine acyltransferase, LPXA,
LEFT-handed B structure; HET: SOG TLA; 2.10A
{Helicobacter pylori} SCOP: b.81.1.1
Length = 270
Score = 25.7 bits (57), Expect = 6.5
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 45 NVAFSNNGQLKGHIRI 60
+ +N L GHI I
Sbjct: 128 HCILANGVTLAGHIEI 143
>1io2_A Ribonuclease HII; endonuclease, hydrolase; 2.00A {Thermococcus
kodakarensis} SCOP: c.55.3.1 PDB: 2dfh_A 2dff_A 2dfe_A
1x1p_A
Length = 213
Score = 25.3 bits (56), Expect = 6.6
Identities = 5/24 (20%), Positives = 8/24 (33%)
Query: 103 GKKFGRKDHLKKHLRTHFPQPRYV 126
+ L+ + R H P V
Sbjct: 171 PSDPRTRAFLENYYREHGEFPPIV 194
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans
agrobacterium tumefaciens, structural genomics, PSI-2;
HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Length = 259
Score = 25.6 bits (56), Expect = 6.7
Identities = 3/37 (8%), Positives = 8/37 (21%), Gaps = 2/37 (5%)
Query: 4 LPLGGSLDPYWSNLALEYFKSHEQSMK--AKNQRPKK 38
D ++N ++ H +
Sbjct: 90 WKPAQKADLLYANAVFQWVPDHLAVLSQLMDQLESGG 126
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 23.6 bits (50), Expect = 7.8
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 37 KKFNCPHCNVAFSNNG-QLKGHIRIHTG 63
+ CP+C+ F NG L+ HI H G
Sbjct: 8 RAMKCPYCDFYFMKNGSDLQRHIWAHEG 35
>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase;
structural genomics; 2.30A {Campylobacter jejuni subsp}
Length = 266
Score = 25.3 bits (56), Expect = 8.3
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 45 NVAFSNNGQLKGHIRI 60
N+ +NN L GH+ +
Sbjct: 132 NIILANNATLAGHVEL 147
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 66
Score = 24.0 bits (51), Expect = 8.3
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 97 YPCTHCGKKFGRKDHLKKHLRTH 119
PC CGK F + L++H H
Sbjct: 14 LPCGLCGKVFTDANRLRQHEAQH 36
>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein;
LEFT-handed parallel beta helix, lipid A biosynthesis,
lipid synthesis; 2.10A {Arabidopsis thaliana}
Length = 305
Score = 25.1 bits (55), Expect = 9.9
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 45 NVAFSNNGQLKGHIRI 60
F+NN L GH+ +
Sbjct: 156 RNIFANNTLLAGHVVV 171
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.469
Gapped
Lambda K H
0.267 0.0744 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,211,603
Number of extensions: 114771
Number of successful extensions: 1280
Number of sequences better than 10.0: 1
Number of HSP's gapped: 985
Number of HSP's successfully gapped: 557
Length of query: 141
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 57
Effective length of database: 4,356,429
Effective search space: 248316453
Effective search space used: 248316453
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (23.8 bits)