RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy1778
         (66 letters)



>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M
           transition [Transcription / Cell division and chromosome
           partitioning].
          Length = 423

 Score = 28.1 bits (62), Expect = 0.22
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 2   RMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLY 53
           + + CP+  C K +     L+ HML  ++N+     P  + +  + AK   Y
Sbjct: 348 KPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPY 399


>gnl|CDD|148473 pfam06874, FBPase_2, Firmicute fructose-1,6-bisphosphatase.  This
           family consists of several bacterial
           fructose-1,6-bisphosphatase proteins (EC:3.1.3.11) which
           seem to be specific to phylum Firmicutes.
           Fructose-1,6-bisphosphatase (FBPase) is a well known
           enzyme involved in gluconeogenesis. This family does not
           seem to be structurally related to pfam00316.
          Length = 641

 Score = 27.2 bits (61), Expect = 0.44
 Identities = 13/40 (32%), Positives = 14/40 (35%), Gaps = 18/40 (45%)

Query: 14  SFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLY 53
           SF  SE LQ HM                 L S   K S+Y
Sbjct: 379 SFQNSEKLQRHM---------------RFLYS---KGSMY 400


>gnl|CDD|235329 PRK05007, PRK05007, PII uridylyl-transferase; Provisional.
          Length = 884

 Score = 25.7 bits (57), Expect = 1.5
 Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 5/24 (20%)

Query: 15  FLRSEHLQ-----EHMLQHNENKP 33
           FLR    Q      H+LQH+ +KP
Sbjct: 666 FLRHTPNQLAWHARHLLQHDLDKP 689


>gnl|CDD|227381 COG5048, COG5048, FOG: Zn-finger [General function prediction
          only].
          Length = 467

 Score = 25.4 bits (55), Expect = 2.3
 Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 3  MFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHS 61
            P     C  SF R EHL  H+  H   KP   C Y  C  S+     L  HL+  H+
Sbjct: 31 PRPDSCPNCTDSFSRLEHLTRHIRSHTGEKP-SQCSYSGCDKSFSRPLELSRHLRTHHN 88


>gnl|CDD|165133 PHA02768, PHA02768, hypothetical protein; Provisional.
          Length = 55

 Score = 23.9 bits (51), Expect = 4.5
 Identities = 9/34 (26%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 4  FPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTC 37
          + CP+  CG+ +++ + +  H+ +HN N     C
Sbjct: 6  YECPI--CGEIYIKRKSMITHLRKHNTNLKLSNC 37


>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger. 
          Length = 23

 Score = 22.8 bits (49), Expect = 5.2
 Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 2/25 (8%)

Query: 4  FPCPLVTCGKSFLRSEHLQEHMLQH 28
          + CP   CGK F     L+EHM  H
Sbjct: 1  YRCPE--CGKVFKSKSALREHMRTH 23


>gnl|CDD|200998 pfam00096, zf-C2H2, Zinc finger, C2H2 type.  The C2H2 zinc finger
          is the classical zinc finger domain. The two conserved
          cysteines and histidines co-ordinate a zinc ion. The
          following pattern describes the zinc finger.
          #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can
          be any amino acid, and numbers in brackets indicate the
          number of residues. The positions marked # are those
          that are important for the stable fold of the zinc
          finger. The final position can be either his or cys.
          The C2H2 zinc finger is composed of two short beta
          strands followed by an alpha helix. The amino terminal
          part of the helix binds the major groove in DNA binding
          zinc fingers. The accepted consensus binding sequence
          for Sp1 is usually defined by the asymmetric
          hexanucleotide core GGGCGG but this sequence does not
          include, among others, the GAG (=CTC) repeat that
          constitutes a high-affinity site for Sp1 binding to the
          wt1 promoter.
          Length = 22

 Score = 22.7 bits (49), Expect = 6.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 11 CGKSFLRSEHLQEHMLQH 28
          CGKSF R  +L+ H+  H
Sbjct: 5  CGKSFSRKSNLKRHLRTH 22


>gnl|CDD|227917 COG5630, ARG2, Acetylglutamate synthase [Amino acid transport and
           metabolism].
          Length = 495

 Score = 24.2 bits (52), Expect = 6.4
 Identities = 9/32 (28%), Positives = 12/32 (37%)

Query: 10  TCGKSFLRSEHLQEHMLQHNENKPKFTCPYQD 41
           T  K   RS++L   M    +      C Y D
Sbjct: 224 TLTKREPRSQNLLHRMEVKKDEISSLECEYHD 255


>gnl|CDD|149846 pfam08908, DUF1852, Domain of unknown function (DUF1852).  This
           family of proteins are functionally uncharacterized.
          Length = 322

 Score = 24.2 bits (53), Expect = 6.5
 Identities = 7/14 (50%), Positives = 13/14 (92%)

Query: 25  MLQHNENKPKFTCP 38
           +L+HN++KP+F+ P
Sbjct: 128 LLEHNKDKPQFSTP 141


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.324    0.132    0.428 

Gapped
Lambda     K      H
   0.267   0.0655    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 2,950,941
Number of extensions: 185698
Number of successful extensions: 198
Number of sequences better than 10.0: 1
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 16
Length of query: 66
Length of database: 10,937,602
Length adjustment: 37
Effective length of query: 29
Effective length of database: 9,296,504
Effective search space: 269598616
Effective search space used: 269598616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.3 bits)