RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1778
(66 letters)
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 79
Score = 47.9 bits (115), Expect = 1e-09
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 4 FPCPLVTCGKSFLRSEHLQEHM-LQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHST 62
PC CG+ F ++L H QH K F+CP C S+ K L H +HS
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKS-FSCPEPACGKSFNFKKHLKEH-MKLHSD 65
Query: 63 NK 64
+
Sbjct: 66 TR 67
Score = 38.3 bits (90), Expect = 7e-06
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 4 FPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCP 38
F CP CGKSF +HL+EHM H++ + + C
Sbjct: 39 FSCPEPACGKSFNFKKHLKEHMKLHSDTRD-YICE 72
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 47.7 bits (114), Expect = 7e-09
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 4 FPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHSTN 63
FPCP CGK F RSE+L+ H H KP F C ++ C + S H HVH+++
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKP-FKCEFEGCDRRFANSSDRKKH-MHVHTSD 148
Query: 64 K 64
K
Sbjct: 149 K 149
Score = 34.6 bits (80), Expect = 6e-04
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHL 56
GKSF L H+ H KP F CP+ C + +L H
Sbjct: 68 EGKSFKAKYKLVNHIRVHTGEKP-FPCPFPGCGKIFARSENLKIHK 112
Score = 33.4 bits (77), Expect = 0.001
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 6/57 (10%)
Query: 5 PCPLVTCGKSFLRSEHLQEHMLQHNENKPK---FTCPYQDCL---MSYVAKSSLYAH 55
P +C ++F L H+ + P+ C +++C S+ AK L H
Sbjct: 25 SRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNH 81
Score = 30.7 bits (70), Expect = 0.016
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 4 FPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTC 37
F C C + F S ++HM H +K
Sbjct: 121 FKCEFEGCDRRFANSSDRKKHMHVHTSDKS-GPS 153
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 43.7 bits (104), Expect = 2e-07
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 4 FPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHSTN 63
C C KS+ R E+L+ H+ H KP + C ++ C ++ S H HS
Sbjct: 68 HKCTFEGCRKSYSRLENLKTHLRSHTGEKP-YMCEHEGCSKAFSNASDRAKHQNRTHSNE 126
Query: 64 K 64
K
Sbjct: 127 K 127
Score = 36.4 bits (85), Expect = 1e-04
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 4 FPCPLVTCGKSFLRSEHLQEHMLQ-HNENKPKFTCPYQDCLMSYVAKSSLYAHLK 57
+ C C K+F + +H + H+ KP + C C Y SSL H+K
Sbjct: 98 YMCEHEGCSKAFSNASDRAKHQNRTHSNEKP-YVCKLPGCTKRYTDPSSLRKHVK 151
Score = 31.8 bits (73), Expect = 0.006
Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 6 CPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAH 55
+ F L HM +H KP C ++ C SY +L H
Sbjct: 40 GGCSRELRPFKAQYMLVVHMRRHTGEKP-HKCTFEGCRKSYSRLENLKTH 88
Score = 31.0 bits (71), Expect = 0.013
Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 4/58 (6%)
Query: 5 PCPLVTCGKSFLRSEHLQEHMLQ---HNENKPKFTCPYQDCLMSYVAKSSLYAHLKHV 59
C C + F E L H+ H E K F C + C + Y + H+
Sbjct: 3 DCRWDGCSQEFDSQEQLVHHINSEHIHGERKE-FVCHWGGCSRELRPFKAQYMLVVHM 59
Score = 25.2 bits (56), Expect = 1.2
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 6 CPLVTCGKSFLRSEHLQEHMLQH 28
C L C K + L++H+
Sbjct: 131 CKLPGCTKRYTDPSSLRKHVKTV 153
>2epa_A Krueppel-like factor 10; transforming growth
factor-beta-inducible early growth response protein 1,
TGFB-inducible early growth response protein 1; NMR
{Homo sapiens}
Length = 72
Score = 42.0 bits (99), Expect = 2e-07
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 2 RMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDC 42
R C CGK++ +S HL+ H H KP F+C ++ C
Sbjct: 16 RSHICSHPGCGKTYFKSSHLKAHTRTHTGEKP-FSCSWKGC 55
Score = 27.7 bits (62), Expect = 0.10
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 4 FPCPLVTCGKSFLRSEHLQEHMLQH 28
F C C + F RS+ L H H
Sbjct: 48 FSCSWKGCERRFARSDELSRHRRTH 72
Score = 25.0 bits (55), Expect = 1.1
Identities = 8/39 (20%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Query: 18 SEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHL 56
S + + + C + C +Y S L AH
Sbjct: 2 SSGSSGPQIDSSRIRS-HICSHPGCGKTYFKSSHLKAHT 39
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 41.0 bits (97), Expect = 6e-07
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 11 CGKSFLRSEHLQEHMLQHN-ENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHS 61
C F +S ++ H+LQ + EN KF CP+ C KS L HL+ HS
Sbjct: 21 CHARFTQSGTMKMHILQKHTENVAKFHCPH--CDTVIARKSDLGVHLRKQHS 70
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 40.2 bits (95), Expect = 3e-06
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 4 FPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAH 55
F C CGK F +L+ H+ H ++P + CP+ C + ++L +H
Sbjct: 63 FQCTFEGCGKRFSLDFNLRTHVRIHTGDRP-YVCPFDGCNKKFAQSTNLKSH 113
Score = 38.3 bits (90), Expect = 2e-05
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAH 55
CGK+F+ S L+ H L H KP F C ++ C + +L H
Sbjct: 40 CGKAFVESSKLKRHQLVHTGEKP-FQCTFEGCGKRFSLDFNLRTH 83
Score = 36.3 bits (85), Expect = 8e-05
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 4 FPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAH 55
CP C K F + +++H+ H + C +C ++V S L H
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHLHTHGP-RV-HVC--AECGKAFVESSKLKRH 53
Score = 33.3 bits (77), Expect = 0.001
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 4 FPCPLVTCGKSFLRSEHLQEHMLQHNENKP 33
+ CP C K F +S +L+ H+L H + K
Sbjct: 93 YVCPFDGCNKKFAQSTNLKSHILTHAKAKN 122
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 38.0 bits (89), Expect = 1e-05
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 1 MRMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDC 42
R+ C C K + +S HL+ H+ H KP + C ++ C
Sbjct: 13 RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKP-YKCTWEGC 53
Score = 36.8 bits (86), Expect = 5e-05
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 4 FPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLK 57
+ C C F RS+ L H +H KP F C C S+ L H+K
Sbjct: 46 YKCTWEGCDWRFARSDELTRHYRKHTGAKP-FQCG--VCNRSFSRSDHLALHMK 96
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 37.6 bits (88), Expect = 2e-05
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 3 MFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAH 55
M+ C CGK+F + L+ H H + P + CP++ C + S L H
Sbjct: 1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLP-YECPHEGCDKRFSLPSRLKRH 52
Score = 32.6 bits (75), Expect = 0.001
Identities = 11/57 (19%), Positives = 15/57 (26%), Gaps = 3/57 (5%)
Query: 4 FPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVH 60
+ CP C K F L+ H H C + H+ H
Sbjct: 32 YECPHEGCDKRFSLPSRLKRHEKVHAGYPC-KKD--DSCSFVGKTWTLYLKHVAECH 85
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 36.7 bits (86), Expect = 4e-05
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 2 RMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDC 42
C CGK++ +S HL+ H+ H KP + C + C
Sbjct: 4 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKP-YHCDWDGC 43
Score = 36.0 bits (84), Expect = 7e-05
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 4 FPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLK 57
+ C CG F RS+ L H +H ++P F C C ++ L H+K
Sbjct: 36 YHCDWDGCGWKFARSDELTRHYRKHTGHRP-FQCQ--KCDRAFSRSDHLALHMK 86
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 36.7 bits (86), Expect = 6e-05
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 4 FPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAH 55
F C C K + + HLQ H +H KP + C ++DC + L H
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKP-YQCDFKDCERRFSRSDQLKRH 57
Score = 34.8 bits (81), Expect = 3e-04
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAH 55
C + F RS+HL+ H H KP F+C + C + L H
Sbjct: 72 CQRKFSRSDHLKTHTRTHTGEKP-FSCRWPSCQKKFARSDELVRH 115
Score = 31.7 bits (73), Expect = 0.005
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 4 FPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAH 55
+ C C + F RS+ L+ H +H KP F C + C + L H
Sbjct: 37 YQCDFKDCERRFSRSDQLKRHQRRHTGVKP-FQC--KTCQRKFSRSDHLKTH 85
Score = 28.6 bits (65), Expect = 0.078
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 4 FPCPLVTCGKSFLRSEHLQEHMLQH 28
F C +C K F RS+ L H H
Sbjct: 95 FSCRWPSCQKKFARSDELVRHHNMH 119
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 35.7 bits (83), Expect = 7e-05
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 4 FPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCP 38
+ CP+ +C + F RS+ L H+ H KP F C
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCR 53
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 35.2 bits (82), Expect = 9e-05
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 11 CGKSFLRSEHLQEHM--LQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVH 60
C + + + H K + CP+ C + K ++ AH+K +H
Sbjct: 16 CSRVYTHISNFCRHYVTSHKRNVKV-YPCPF--CFKEFTRKDNMTAHVKIIH 64
Score = 30.2 bits (69), Expect = 0.010
Identities = 8/29 (27%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 2 RMFPCPLVTCGKSFLRSEHLQEHMLQHNE 30
+++PCP C K F R +++ H+ ++
Sbjct: 39 KVYPCPF--CFKEFTRKDNMTAHVKIIHK 65
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 34.2 bits (79), Expect = 2e-04
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 4 FPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTC 37
F C CG F RS+ L H H+ KP
Sbjct: 13 FACTWPGCGWRFSRSDELSRHRRSHSGVKP-SGP 45
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 36.0 bits (84), Expect = 2e-04
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 6 CPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAH 55
C CGK+F + L+ H H + P + CP++ C + S L H
Sbjct: 107 CHFENCGKAFKKHNQLKVHQFSHTQQLP-YECPHEGCDKRFSLPSRLKRH 155
Score = 34.9 bits (81), Expect = 4e-04
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 4 FPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAH 55
FPC C K F HL H L H K FTC C + + K+++ H
Sbjct: 43 FPCKEEGCEKGFTSLHHLTRHSLTHTGEKN-FTCDSDGCDLRFTTKANMKKH 93
Score = 33.0 bits (76), Expect = 0.002
Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 4 FPCPLVTCGKSFLRSEHLQEHMLQHNENKPK-FTCPYQDCLMSYVAKSSLYAH 55
F C C F ++++H + + K + C +++C ++ + L H
Sbjct: 73 FTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVH 125
Score = 32.6 bits (75), Expect = 0.003
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 6 CPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAH 55
C CG ++ ++ LQ H+ +H KP F C + C + + L H
Sbjct: 15 CSFADCGAAYNKNWKLQAHLCKHTGEKP-FPCKEEGCEKGFTSLHHLTRH 63
Score = 27.9 bits (63), Expect = 0.17
Identities = 12/57 (21%), Positives = 16/57 (28%), Gaps = 3/57 (5%)
Query: 4 FPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVH 60
+ CP C K F L+ H H K C + H+ H
Sbjct: 135 YECPHEGCDKRFSLPSRLKRHEKVHAGYPCK--KDDS-CSFVGKTWTLYLKHVAECH 188
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 34.8 bits (81), Expect = 2e-04
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 11 CGKSFLRSEHLQEHMLQHN--ENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHS 61
CG F R + + H+ H+ KP + C Q C + L H+K VHS
Sbjct: 41 CGLRFKRKDRMSYHVRSHDGSVGKP-YIC--QSCGKGFSRPDHLNGHIKQVHS 90
Score = 33.6 bits (78), Expect = 6e-04
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAH 55
CGK F HL H L H+ KP ++CP C + + K + H
Sbjct: 13 CGKIFRDVYHLNRHKLSHSGEKP-YSCP--VCGLRFKRKDRMSYH 54
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 33.4 bits (77), Expect = 2e-04
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 2 RMFPCPLVTCGKSFLRSEHLQEHMLQH 28
R F C CGK F RS+ LQ H H
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 34.0 bits (79), Expect = 3e-04
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 10 TCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHS 61
C ++F R EHL+ H H KP + C C ++ + L H + +HS
Sbjct: 7 VCTRAFARQEHLKRHYRSHTNEKP-YPCG--LCNRAFTRRDLLIRHAQKIHS 55
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 34.3 bits (79), Expect = 3e-04
Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 6/54 (11%)
Query: 11 CGKSFLRSEHLQEHMLQHNEN---KPKFTCPYQDCLMSYVAKSSLYAHLKHVHS 61
CG + + L H +H E F C + C + S+ AH H
Sbjct: 13 CGFTCRQKASLNWHQRKHAETVAALR-FPCEF--CGKRFEKPDSVAAHRSKSHP 63
Score = 28.9 bits (65), Expect = 0.030
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 4 FPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTC 37
FPC CGK F + + + H + +
Sbjct: 39 FPCEF--CGKRFEKPDSVAAHRSKSHPALLLAPQ 70
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 34.4 bits (80), Expect = 3e-04
Identities = 8/48 (16%), Positives = 13/48 (27%), Gaps = 4/48 (8%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKH 58
CG+ F RS+ + H + P L +
Sbjct: 37 CGRKFARSDERKRHRDIQHI-LP-ILE--DKVEELLSKNYHLENEVAR 80
Score = 30.5 bits (70), Expect = 0.010
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAH 55
C ++F RS+HL H+ H KP F C C + H
Sbjct: 9 CMRNFSRSDHLTTHIRTHTGEKP-FAC--DICGRKFARSDERKRH 50
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A
{Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB:
1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A*
1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 34.0 bits (79), Expect = 4e-04
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 4 FPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAH 55
+ CP+ +C + F +S L H+ H KP F C + C+ ++ L H
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKP-FQC--RICMRNFSRSDHLTTH 53
Score = 32.1 bits (74), Expect = 0.003
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLK 57
C ++F RS+HL H+ H KP F C C + H K
Sbjct: 40 CMRNFSRSDHLTTHIRTHTGEKP-FACD--ICGRKFARSDERKRHTK 83
Score = 27.4 bits (62), Expect = 0.16
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 11 CGKSFLRSEHLQEHMLQH 28
CG+ F RS+ + H H
Sbjct: 68 CGRKFARSDERKRHTKIH 85
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 32.2 bits (73), Expect = 0.001
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKPKFTC 37
CGK F HL H L H+ KP ++
Sbjct: 18 CGKIFRDVYHLNRHKLSHSGEKP-YSS 43
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2
zinc fingers, beta-BETA-alpha, solution structure; NMR
{Saccharomyces cerevisiae}
Length = 64
Score = 31.9 bits (72), Expect = 0.002
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 6/56 (10%)
Query: 11 CGKSFLRSEHLQEHML------QHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVH 60
C +S LQ H+L C ++DC +S+ H+ H
Sbjct: 9 CPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH 64
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 32.6 bits (74), Expect = 0.002
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 7/64 (10%)
Query: 4 FPCPLVTCGKSFLRSEHLQEHMLQ---HNENKPKFTCPYQDCL---MSYVAKSSLYAHLK 57
P +C ++F L H+ + C +++C S+ AK L H+
Sbjct: 24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI- 82
Query: 58 HVHS 61
VH+
Sbjct: 83 RVHT 86
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 32.9 bits (76), Expect = 0.002
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHS 61
C ++F R L+ HM+ H P + C C ++ K L +H+ +HS
Sbjct: 72 CQETFRRRMELRLHMVSHTGEMP-YKC--SSCSQQFMQKKDLQSHMIKLHS 119
Score = 32.5 bits (75), Expect = 0.003
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAH 55
C K FL +L+ H +H KP F CP C Y K +L H
Sbjct: 13 CHKKFLSKYYLKVHNRKHTGEKP-FECP--KCGKCYFRKENLLEH 54
Score = 28.2 bits (64), Expect = 0.091
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 11 CGKSFLRSEHLQEHMLQ---HNENKPKFTCPYQDCLMSYVAKSSLYAH 55
CGK + R E+L EH + + + FTC C ++ + L H
Sbjct: 41 CGKCYFRKENLLEHEARNCMNRSEQV-FTC--SVCQETFRRRMELRLH 85
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 31.4 bits (71), Expect = 0.002
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 2 RMFPCPLVTCGKSFLRSEHLQEHMLQHNENK 32
+ F C C K+F R +++ H+ H E++
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 31.3 bits (72), Expect = 0.003
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLK 57
C S L+ H H ++P F C Y C S+L H+K
Sbjct: 15 CSYSCSSKAALRIHERIHCTDRP-FKCNY--CSFDTKQPSNLSKHMK 58
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 30.4 bits (69), Expect = 0.004
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 2 RMFPCPLVTCGKSFLRSEHLQEHMLQH 28
+ F CP C +SF RS+HL H +H
Sbjct: 10 KPFQCPD--CDRSFSRSDHLALHRKRH 34
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 30.0 bits (68), Expect = 0.006
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 2 RMFPCPLVTCGKSFLRSEHLQEHMLQH 28
+ C + CGK + ++ HL+ H+ H
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWH 33
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic
acid binding, KIAA1227 protein, structural genomics;
NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 31.4 bits (70), Expect = 0.007
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 4 FPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHSTN 63
CP C F E QEH + K TC +C+ ++ + S++ H VH+ N
Sbjct: 43 AVCPY--CSLRFFSPELKQEHESKCEYK--KLTCL--ECMRTFKSSFSIWRHQVEVHNQN 96
Query: 64 KIT 66
+
Sbjct: 97 NMA 99
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.007
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKPKFTC 37
CGK+F R HL EH+ +H K
Sbjct: 18 CGKNFGRHSHLIEHLKRHFREKS-SGP 43
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 29.5 bits (66), Expect = 0.008
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 4 FPCPLVTCGKSFLRSEHLQEHMLQHNENKPK 34
F CP C K F+RS+HL +H+ H +
Sbjct: 3 FACP--ECPKRFMRSDHLSKHITLHELLGEE 31
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 29.4 bits (67), Expect = 0.012
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 10 TCGKSFLRSEHLQEHMLQHNENKP 33
TCG F++ HL+ H+L H + P
Sbjct: 16 TCGARFVQVAHLRAHVLIHTGSGP 39
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 28.7 bits (64), Expect = 0.017
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 4 FPCPLVTCGKSFLRSEHLQEHMLQHNENK 32
F CP C K F+RS+HL H+L H K
Sbjct: 3 FACP--ECPKRFMRSDHLTLHILLHENKK 29
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 28.8 bits (65), Expect = 0.017
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 2 RMFPCPLVTCGKSFLRSEHLQEHMLQH 28
R F C C ++F R EHL+ H H
Sbjct: 1 RSFVCE--VCTRAFARQEHLKRHYRSH 25
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 29.9 bits (66), Expect = 0.027
Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 7/58 (12%)
Query: 4 FPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHS 61
F CP C F S L++H+ K CP C + + S H+ H+
Sbjct: 75 FVCP--LCLMPFSSSVSLKQHIRYTEHTK---VCPV--CKKEFTSTDSALDHVCKKHN 125
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 29.7 bits (68), Expect = 0.028
Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAH 55
CGKSF HM H +P + C C + K L H
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRP-YGC--GVCGKKFKMKHHLVGH 56
Score = 27.0 bits (61), Expect = 0.27
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHS 61
CGK F HL HM H KP + C C ++ + S + +HV S
Sbjct: 43 CGKKFKMKHHLVGHMKIHTGIKP-YEC--NICAKRFMWRDSFH---RHVTS 87
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 29.7 bits (68), Expect = 0.036
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAH 55
CGKSF RS+HL EH H KP + C +C S+ K L H
Sbjct: 27 CGKSFSRSDHLAEHQRTHTGEKP-YKC--PECGKSFSDKKDLTRH 68
Score = 28.6 bits (65), Expect = 0.082
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAH 55
CGKSF + HL+ H H KP + C +C S+ + +L+ H
Sbjct: 111 CGKSFSQLAHLRAHQRTHTGEKP-YKC--PECGKSFSREDNLHTH 152
Score = 28.6 bits (65), Expect = 0.090
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAH 55
CGKSF + +L+ H H KP + CP +C S+ + L AH
Sbjct: 83 CGKSFSQRANLRAHQRTHTGEKP-YACP--ECGKSFSQLAHLRAH 124
Score = 27.4 bits (62), Expect = 0.22
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAH 55
CGKSF + L H H KP + C +C S+ +++L AH
Sbjct: 55 CGKSFSDKKDLTRHQRTHTGEKP-YKC--PECGKSFSQRANLRAH 96
Score = 27.0 bits (61), Expect = 0.29
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAH 55
CGKSF R ++L H H KP + C +C S+ + +L H
Sbjct: 139 CGKSFSREDNLHTHQRTHTGEKP-YKC--PECGKSFSRRDALNVH 180
Score = 24.7 bits (55), Expect = 2.1
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGKSF R + L H H K
Sbjct: 167 CGKSFSRRDALNVHQRTHTGKKT 189
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 28.5 bits (63), Expect = 0.042
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLK 57
CG + L++H+ H + +P + C C S+ K +L H+K
Sbjct: 7 CGIRXKKPSMLKKHIRTHTDVRP-YHC--TYCNFSFKTKGNLTKHMK 50
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 27.9 bits (63), Expect = 0.050
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 11 CGKSFLRSEHLQEHM 25
CGK F R +HL H+
Sbjct: 18 CGKGFSRPDHLNGHI 32
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 28.5 bits (65), Expect = 0.052
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAH 55
CGKSF RS L H+L H++ +P + C Q C + KS + H
Sbjct: 7 CGKSFKRSSTLSTHLLIHSDTRP-YPC--QYCGKRFHQKSDMKKH 48
Score = 25.8 bits (58), Expect = 0.57
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAH 55
CGK F + +++H H KP C Q C ++ S+L H
Sbjct: 35 CGKRFHQKSDMKKHTFIHTGEKP-HKC--QVCGKAFSQSSNLITH 76
Score = 23.5 bits (52), Expect = 3.4
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 11 CGKSFLRSEHLQEHMLQH 28
CGK+F +S +L H +H
Sbjct: 63 CGKAFSQSSNLITHSRKH 80
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.057
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK F R HL H+ H+ K
Sbjct: 18 CGKGFGRRSHLAGHLRLHSREKS 40
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.058
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK+F+ S HL +H+ H +
Sbjct: 18 CGKAFVLSAHLNQHLRVHTQETL 40
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.059
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CG +F S L +H+ H P
Sbjct: 18 CGMNFSWSCSLFKHLRSHERTDP 40
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.060
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK+F R HL EH H +P
Sbjct: 18 CGKAFHRHTHLNEHRRIHTGYRP 40
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 27.2 bits (61), Expect = 0.071
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGKSF + L H +++ P
Sbjct: 17 CGKSFTQRGSLAVHQRSCSQSGP 39
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear
protein, DNA- binding, transcription, C2H2-type zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 28.2 bits (64), Expect = 0.073
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAH 55
CGK F R + L+ HM H KP + C + C + SSL H
Sbjct: 14 CGKCFSRKDKLKTHMRCHTGVKP-YKC--KTCDYAAADSSSLNKH 55
Score = 28.2 bits (64), Expect = 0.085
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAH 55
C + S L +H+ H++ +P F C Q C + S L H
Sbjct: 42 CDYAAADSSSLNKHLRIHSDERP-FKC--QICPYASRNSSQLTVH 83
Score = 25.5 bits (57), Expect = 0.85
Identities = 5/23 (21%), Positives = 8/23 (34%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
C + S L H+ H +
Sbjct: 70 CPYASRNSSQLTVHLRSHTGDSG 92
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 27.5 bits (62), Expect = 0.075
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 10 TCGKSFLRSEHLQEHMLQHNENKP 33
CG F + L+ H+ H + P
Sbjct: 16 ICGTRFRHLQTLKSHLRIHTGSGP 39
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 27.9 bits (63), Expect = 0.080
Identities = 6/27 (22%), Positives = 8/27 (29%), Gaps = 1/27 (3%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKPKFTC 37
CGK+F R + H
Sbjct: 53 CGKTFTRRNTMARHADNCAGPDG-VEG 78
Score = 27.5 bits (62), Expect = 0.14
Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Query: 11 CGKSFLRSEHLQEHMLQH----NENKPKFTCPYQDCLMSYVAKSSLYAH 55
C K+F + + L H ++ F C C ++ ++++ H
Sbjct: 21 CDKTFRQKQLLDMHFKRYHDPNFVPAA-FVC--SKCGKTFTRRNTMARH 66
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 0.097
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Query: 5 PCP-LVTCGKSFLRSEHLQEHMLQHNENKP 33
P P L L E +Q+++ + N + P
Sbjct: 335 PSPMLSISN---LTQEQVQDYVNKTNSHLP 361
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.10
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK F R+ HL H L H KP
Sbjct: 18 CGKVFRRNSHLARHQLIHTGEKP 40
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.10
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGKSF++ HL H H KP
Sbjct: 18 CGKSFIQKSHLNRHRRIHTGEKP 40
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 27.4 bits (62), Expect = 0.15
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAH 55
C K+F R +HL++H H++ KP F C Q+C + +L H
Sbjct: 51 CHKAFRRQDHLRDHRYIHSKEKP-FKC--QECGKGFCQSRTLAVH 92
Score = 27.4 bits (62), Expect = 0.20
Identities = 9/27 (33%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKPKFTC 37
CGK F +S L H H + T
Sbjct: 79 CGKGFCQSRTLAVHKTLHMQTSS-PTA 104
Score = 27.0 bits (61), Expect = 0.21
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAH 55
CG+ F +S +L H H + +P +TC C ++ + L H
Sbjct: 23 CGRHFTKSYNLLIHERTHTDERP-YTC--DICHKAFRRQDHLRDH 64
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 26.5 bits (58), Expect = 0.16
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 2 RMFPCPLVTCGKSFLRSEHLQEHMLQHNEN 31
R + C C K+F+R+ L H H E
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQEK 31
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 0.16
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK F +S HLQ H H KP
Sbjct: 18 CGKEFSQSSHLQTHQRVHTGEKP 40
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 0.18
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK+F ++ HL H+ H KP
Sbjct: 18 CGKAFRQNIHLASHLRIHTGEKP 40
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 66
Score = 27.1 bits (59), Expect = 0.19
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 3 MFPCPLVTCGKSFLRSEHLQEHMLQH 28
+ PC L CGK F + L++H QH
Sbjct: 13 ILPCGL--CGKVFTDANRLRQHEAQH 36
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 0.21
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGKSF L H + H KP
Sbjct: 18 CGKSFCGRSRLNRHSMVHTAEKP 40
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 27.9 bits (61), Expect = 0.22
Identities = 5/27 (18%), Positives = 8/27 (29%), Gaps = 2/27 (7%)
Query: 2 RMFPCPLVTCGKSFLRSEHLQEHMLQH 28
+ C + C L H+ H
Sbjct: 179 HGYQCHV--CSAVLFSPLDLDAHVASH 203
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 25.9 bits (58), Expect = 0.24
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK+F S HL +H H+ +P
Sbjct: 18 CGKAFRVSSHLVQHHSVHSGERP 40
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 25.8 bits (56), Expect = 0.24
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Query: 4 FPCPLVTCGKSFLRSEHLQEHM 25
F CP C K F+RS+ L +H+
Sbjct: 3 FACP--ACPKRFMRSDALSKHI 22
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.0 bits (58), Expect = 0.26
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGKSF S L +H + H KP
Sbjct: 18 CGKSFSGSYRLTQHWITHTREKP 40
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 25.9 bits (58), Expect = 0.27
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGKS+ + HL +H H KP
Sbjct: 18 CGKSYNQRVHLTQHQRVHTGEKP 40
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 26.6 bits (60), Expect = 0.27
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAH 55
CGKSF S L +H H KP + C +C +++ +S L H
Sbjct: 24 CGKSFSHSSDLSKHRRTHTGEKP-YKC--DECGKAFIQRSHLIGH 65
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 25.9 bits (58), Expect = 0.28
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGKSF++S HL +H H KP
Sbjct: 18 CGKSFIQSAHLIQHQRIHTGEKP 40
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.0 bits (58), Expect = 0.30
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK F ++ HL H H KP
Sbjct: 18 CGKRFTQNSHLHSHQRVHTGEKP 40
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.0 bits (58), Expect = 0.31
Identities = 8/23 (34%), Positives = 9/23 (39%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK + R L H H K
Sbjct: 18 CGKGYKRRLDLDFHQRVHTGEKL 40
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.9 bits (58), Expect = 0.32
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK F ++ HL H H KP
Sbjct: 18 CGKVFTQNSHLTNHWRIHTGEKP 40
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.9 bits (58), Expect = 0.32
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK F ++ HL H H KP
Sbjct: 18 CGKVFTQNSHLARHRGIHTGEKP 40
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 25.6 bits (57), Expect = 0.33
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CG+ F HL +H H KP
Sbjct: 18 CGRGFTLKSHLNQHQRIHTGEKP 40
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 0.35
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK F ++ HL H H KP
Sbjct: 18 CGKVFTQNSHLARHRRVHTGGKP 40
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 0.35
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
C K+F++ HL +H H +
Sbjct: 18 CRKTFIQIGHLNQHKRVHTGERS 40
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.5 bits (57), Expect = 0.35
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK F ++ HL H H KP
Sbjct: 18 CGKVFTQNSHLARHRGIHTGEKP 40
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 25.6 bits (57), Expect = 0.35
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK F R+ L +H H KP
Sbjct: 18 CGKVFSRNSQLSQHQKIHTGEKP 40
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 25.9 bits (58), Expect = 0.40
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAH 55
C SF +L H H KP + C C + ++L H
Sbjct: 23 CQASFRYKGNLASHKTVHTGEKP-YRC--NICGAQFNRPANLKTH 64
Score = 25.9 bits (58), Expect = 0.41
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CG F R +L+ H H+ KP
Sbjct: 51 CGAQFNRPANLKTHTRIHSGEKP 73
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 0.40
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
C K+F + HL +H H KP
Sbjct: 18 CSKAFTQKAHLAQHQKTHTGEKP 40
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.5 bits (57), Expect = 0.41
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK F ++ HL H H KP
Sbjct: 18 CGKVFTQNSHLVRHRGIHTGEKP 40
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 0.44
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK F ++ HL H H KP
Sbjct: 18 CGKVFTQNSHLANHQRIHTGVKP 40
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 25.5 bits (57), Expect = 0.46
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK+F ++ HL +H H KP
Sbjct: 18 CGKAFSQTTHLIQHQRVHTGEKP 40
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 25.2 bits (56), Expect = 0.47
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK+F + L H+ H + P
Sbjct: 17 CGKAFSQKGSLIVHIRVHTGSGP 39
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 72
Score = 25.9 bits (58), Expect = 0.47
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAH 55
CGK+F RS L +H H KP + C +C ++ S L H
Sbjct: 20 CGKAFSRSSILVQHQRVHTGEKP-YKC--LECGKAFSQNSGLINH 61
Score = 24.0 bits (53), Expect = 2.4
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK+F ++ L H H
Sbjct: 48 CGKAFSQNSGLINHQRIHTSGPS 70
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, transcription; NMR {Homo sapiens}
Length = 29
Score = 25.1 bits (54), Expect = 0.48
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 5 PCPLVTCGKSFLRSEHLQEHMLQHNENK 32
PC V CGK+F ++ L H+ QH K
Sbjct: 2 PCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 25.2 bits (56), Expect = 0.50
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
C K+F +L H H E KP
Sbjct: 16 CEKAFSSKSYLLVHQQTHAEEKP 38
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation
domain, Zn finger, DNA-binding regulatory protein; NMR
{Homo sapiens} SCOP: g.37.1.1
Length = 38
Score = 25.0 bits (54), Expect = 0.53
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 2 RMFPCPLVTCGKSFLRSEHLQEHMLQHN 29
+ F C CG+ F +HL H +H
Sbjct: 5 KPFLCTAPGCGQRFTNEDHLAVHKHKHE 32
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 0.54
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGKSF R+ L +H H+ KP
Sbjct: 18 CGKSFSRAPCLLKHERLHSGEKP 40
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 0.54
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK F ++ L H H KP
Sbjct: 18 CGKRFTQNSQLHSHQRVHTGEKP 40
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 0.56
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK F + +L H H KP
Sbjct: 18 CGKVFRHNSYLSRHQRIHTGEKP 40
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 0.63
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK+F S L H H KP
Sbjct: 18 CGKAFGLSAELVRHQRIHTGEKP 40
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 24.8 bits (55), Expect = 0.64
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK F + H H+ KP
Sbjct: 18 CGKGFYTNSQCYSHQRSHSGEKP 40
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 25.2 bits (56), Expect = 0.65
Identities = 10/23 (43%), Positives = 10/23 (43%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK F R L H H KP
Sbjct: 18 CGKGFSRRSALNVHHKLHTGEKP 40
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 24.8 bits (55), Expect = 0.66
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK F R + L H H+
Sbjct: 18 CGKVFSRKDQLVSHQKTHSGQSG 40
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 0.72
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK+F+ LQEH H KP
Sbjct: 18 CGKAFIHDSQLQEHQRIHTGEKP 40
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 0.74
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK+F ++ L H H KP
Sbjct: 18 CGKAFSQTSKLARHQRIHTGEKP 40
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 0.74
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK + R +L H H K
Sbjct: 18 CGKGYNRRLNLDMHQRVHMGEKT 40
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 0.75
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK+F R L H H KP
Sbjct: 18 CGKAFSRKYQLISHQRTHAGEKP 40
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 0.78
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK+F ++ L H H KP
Sbjct: 18 CGKAFSQTSKLARHQRVHTGEKP 40
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 25.7 bits (55), Expect = 0.78
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 5/64 (7%)
Query: 4 FPCPLVTCGKSFLRS-EHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHST 62
CP TC ++ L++HM + + C + C + +K+ L H HS
Sbjct: 25 AVCP--TCNVVTRKTLVGLKKHMEVCQKLQDALKCQH--CRKQFKSKAGLNYHTMAEHSA 80
Query: 63 NKIT 66
Sbjct: 81 KPSD 84
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 24.8 bits (55), Expect = 0.79
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK F+ L H + H KP
Sbjct: 18 CGKGFICRRDLYTHHMVHTGEKP 40
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 0.80
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK+F R L H H KP
Sbjct: 18 CGKAFARKSTLIMHQRIHTGEKP 40
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 24.8 bits (55), Expect = 0.80
Identities = 11/23 (47%), Positives = 11/23 (47%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGKSF S L H H KP
Sbjct: 18 CGKSFSISSQLATHQRIHTGEKP 40
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 24.8 bits (55), Expect = 0.82
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
C F ++ L+ H H KP
Sbjct: 18 CDMCFSQASSLRLHQNVHVGEKP 40
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 0.86
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK+F +L HM H+ KP
Sbjct: 18 CGKAFSSKSYLIIHMRTHSGEKP 40
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 24.5 bits (54), Expect = 0.98
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 11 CGKSFLRSEHLQEHMLQHN-ENKPK 34
CGK+F R HL H H ++ P
Sbjct: 18 CGKAFTRIFHLTRHQKIHTRKSGPS 42
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 0.99
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK+F L +H H KP
Sbjct: 18 CGKAFSDHIGLNQHRRIHTGEKP 40
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 24.4 bits (54), Expect = 1.0
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGKSF +L H H K
Sbjct: 18 CGKSFRAKGNLVTHQRIHTGEKS 40
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 24.4 bits (54), Expect = 1.0
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK FL++ + +H H KP
Sbjct: 18 CGKFFLQASNFIQHRRIHTGEKP 40
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 24.4 bits (54), Expect = 1.1
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK+F L H H KP
Sbjct: 18 CGKAFKTKSSLICHRRSHTGEKP 40
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 24.4 bits (54), Expect = 1.1
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK+F R + L H H
Sbjct: 16 CGKAFNRKDQLISHQRTHAGESG 38
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 24.4 bits (54), Expect = 1.1
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK+F +L H H
Sbjct: 18 CGKAFRSKSYLIIHTRTHTGESG 40
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 1.1
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK+F L H H ++K
Sbjct: 18 CGKAFCWKSQLIMHQRTHVDDKH 40
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 1.1
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK+F +L H + H KP
Sbjct: 18 CGKAFRAHSNLTTHQVIHTGEKP 40
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.5 bits (54), Expect = 1.2
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK+F + +H H +P
Sbjct: 18 CGKAFGDNSSCTQHQRLHTGQRP 40
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 1.2
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK+F + L H H KP
Sbjct: 18 CGKTFSQKSILSAHQRTHTGEKP 40
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 1.2
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK+F R L H H KP
Sbjct: 18 CGKAFTRKSTLSMHQKIHTGEKP 40
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 1.3
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK+F + +L +H H KP
Sbjct: 18 CGKAFAQKANLTQHQRIHTGEKP 40
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 24.1 bits (53), Expect = 1.3
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGKSF + L H H + P
Sbjct: 16 CGKSFRQKGSLTLHERIHTGSGP 38
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 1.4
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK+F R L H H +
Sbjct: 18 CGKAFTRKSGLHIHQQSHTGERH 40
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 24.1 bits (53), Expect = 1.4
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGKSF + L +H H+ KP
Sbjct: 18 CGKSFRWASCLLKHQRVHSGEKP 40
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 24.2 bits (53), Expect = 1.4
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 11 CGKSFLRSEHLQEHMLQH 28
C ++F + L +H H
Sbjct: 16 CKETFSDNNRLVQHQKMH 33
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 24.0 bits (53), Expect = 1.5
Identities = 6/23 (26%), Positives = 8/23 (34%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
C K+F +L H H
Sbjct: 18 CQKAFNTKSNLMVHQRTHTGESG 40
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 1.5
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGKSF++ L H H P
Sbjct: 18 CGKSFIKKSQLHVHQRIHTGENP 40
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 1.7
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
C K+F +S L H H KP
Sbjct: 18 CKKTFTQSSSLTVHQRIHTGEKP 40
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 1.7
Identities = 9/23 (39%), Positives = 9/23 (39%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
C KSF L H H KP
Sbjct: 18 CHKSFRYGSSLTVHQRIHTGEKP 40
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 24.0 bits (53), Expect = 1.8
Identities = 9/23 (39%), Positives = 9/23 (39%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
C KSF L H H KP
Sbjct: 18 CEKSFSGKLRLLVHQRMHTREKP 40
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 1.9
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK+F +L H H KP
Sbjct: 18 CGKAFTDRSNLFTHQKIHTGEKP 40
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 1.9
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK+F L H + H KP
Sbjct: 18 CGKAFSVYSSLTTHQVIHTGEKP 40
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 44
Score = 23.6 bits (52), Expect = 2.0
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK+F+ L H H
Sbjct: 18 CGKAFIWKSLLIVHERTHAGVSG 40
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 2.0
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK+F L H H KP
Sbjct: 18 CGKAFSVRSSLTTHQAIHTGKKP 40
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 2.1
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK+F +L +H H + KP
Sbjct: 18 CGKAFTIRSNLIKHQKIHTKQKP 40
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.7 bits (52), Expect = 2.1
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK+F L H H+ KP
Sbjct: 18 CGKAFRARSSLAIHQATHSGEKP 40
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 2.2
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
C K+F L +H H+ KP
Sbjct: 18 CRKAFSHHASLTQHQRVHSGEKP 40
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.7 bits (52), Expect = 2.3
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGKSF + L H H KP
Sbjct: 18 CGKSFTKKSQLHVHQQIHTGEKP 40
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding
domain; 1.90A {Mus musculus}
Length = 101
Score = 24.4 bits (52), Expect = 2.4
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 11/70 (15%)
Query: 2 RMFPCPLVTCGKSFLRSEHLQEHM----------LQHNENKPKFTCPY-QDCLMSYVAKS 50
RM PC V C + E + M ++ F C Q C +Y+++
Sbjct: 16 RMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQCTRGSLFMCSIVQGCKRTYLSQR 75
Query: 51 SLYAHLKHVH 60
L AH+ H H
Sbjct: 76 DLQAHINHRH 85
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 2.5
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK+F +L +H H KP
Sbjct: 18 CGKAFTDRSNLIKHQKIHTGEKP 40
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 2.5
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGKSF + L H H P
Sbjct: 18 CGKSFSFNSQLIVHQRIHTGENP 40
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.3 bits (51), Expect = 2.6
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK + +L H H +P
Sbjct: 18 CGKGYNSKFNLDMHQKVHTGERP 40
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 24.8 bits (53), Expect = 2.7
Identities = 4/25 (16%), Positives = 11/25 (44%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKPKF 35
GK+++ + + +Q + F
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIF 185
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.3 bits (51), Expect = 2.8
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGKSF L+ H H +
Sbjct: 18 CGKSFTWKSRLRIHQKCHTGERH 40
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.3 bits (51), Expect = 2.9
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK+F++ L H H KP
Sbjct: 18 CGKAFIQKSTLSMHQRIHRGEKP 40
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.2 bits (51), Expect = 3.3
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
C K+F +L H H KP
Sbjct: 18 CQKAFNTKSNLIVHQRTHTGEKP 40
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.2 bits (51), Expect = 3.6
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK F +L H H +P
Sbjct: 18 CGKVFTHKTNLIIHQKIHTGERP 40
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 22.9 bits (50), Expect = 3.7
Identities = 8/23 (34%), Positives = 9/23 (39%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
C K+F L H H KP
Sbjct: 18 CAKTFSLKSQLIVHQRSHTGVKP 40
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.9 bits (50), Expect = 3.8
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK+F + L H H+ KP
Sbjct: 18 CGKAFSHRQSLSVHQRIHSGKKP 40
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 22.9 bits (50), Expect = 4.1
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 11 CGKSFLRSEHLQEH 24
CGK+F+++ L H
Sbjct: 18 CGKAFIQNTSLIRH 31
>2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron
oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP:
b.33.1.2 d.129.3.3 PDB: 2b24_A
Length = 470
Score = 23.7 bits (51), Expect = 5.3
Identities = 5/9 (55%), Positives = 5/9 (55%)
Query: 31 NKPKFTCPY 39
N F CPY
Sbjct: 102 NTSHFRCPY 110
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 23.1 bits (49), Expect = 5.9
Identities = 4/23 (17%), Positives = 7/23 (30%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
C K + L + + K
Sbjct: 45 CRKDSCQEAALNKDEGNESGKKT 67
>3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S,
aromatic hydroc catabolism, iron, iron-sulfur,
metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas
testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A*
2xr8_A* 2yfi_A 2yfj_A*
Length = 457
Score = 23.7 bits (51), Expect = 6.2
Identities = 5/9 (55%), Positives = 5/9 (55%)
Query: 31 NKPKFTCPY 39
N FTC Y
Sbjct: 114 NAKAFTCTY 122
>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske
non-heme dioxygenase, substrate specificity iron-
sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP:
b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A*
2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A
1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A*
Length = 447
Score = 23.6 bits (51), Expect = 6.2
Identities = 4/9 (44%), Positives = 4/9 (44%)
Query: 31 NKPKFTCPY 39
N F C Y
Sbjct: 93 NAKGFVCGY 101
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 22.5 bits (49), Expect = 6.5
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKP 33
CGK+F L+ H H K
Sbjct: 18 CGKNFCYISALRIHQRVHMGEKC 40
>1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer,
oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2
d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A
Length = 460
Score = 23.7 bits (51), Expect = 6.7
Identities = 5/9 (55%), Positives = 5/9 (55%)
Query: 31 NKPKFTCPY 39
N FTC Y
Sbjct: 112 NAKSFTCSY 120
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 23.2 bits (49), Expect = 7.0
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 11 CGKSFLRSEHLQEHMLQHN 29
CG SF + L HM++
Sbjct: 86 CGHSFESLQDLSVHMIKTK 104
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol
protease, UBL conjugation pathway, metal-binding,
zinc-finger,structural genomics; 2.80A {Homo sapiens}
Length = 854
Score = 23.3 bits (49), Expect = 8.5
Identities = 4/27 (14%), Positives = 9/27 (33%)
Query: 6 CPLVTCGKSFLRSEHLQEHMLQHNENK 32
+ CG+ + H ++H
Sbjct: 233 DGSILCGRRYFDGSGGNNHAVEHYRET 259
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 22.9 bits (48), Expect = 9.5
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 7/61 (11%)
Query: 6 CPLVTCGKSFLRS-EHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLKHVHSTNK 64
CP TC ++ E L++HM + FTC + C + + + H+ H++
Sbjct: 37 CP--TCQAVGRKTIEGLKKHMENCK--QEMFTCHH--CGKQLRSLAGMKYHVMANHNSLP 90
Query: 65 I 65
Sbjct: 91 S 91
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.132 0.428
Gapped
Lambda K H
0.267 0.0478 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 898,437
Number of extensions: 35599
Number of successful extensions: 355
Number of sequences better than 10.0: 1
Number of HSP's gapped: 322
Number of HSP's successfully gapped: 220
Length of query: 66
Length of database: 6,701,793
Length adjustment: 37
Effective length of query: 29
Effective length of database: 5,668,716
Effective search space: 164392764
Effective search space used: 164392764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.0 bits)