RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1778
(66 letters)
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 35.5 bits (82), Expect = 2e-05
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 4 FPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY 39
F CP CGKSF +HL+EHM H++ + + C +
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRD-YICEF 36
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 31.6 bits (72), Expect = 4e-04
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 2 RMFPCPLVTCGKSFLRSEHLQEHMLQH 28
R + CP C K F +S +L+ H+L H
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTH 27
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 31.1 bits (71), Expect = 7e-04
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 4 FPCPLVTCGKSFLRSEHLQEHMLQHNE 30
+ C C K+F+R+ L H H E
Sbjct: 4 YSCDHPGCDKAFVRNHDLIRHKKSHQE 30
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 31.1 bits (71), Expect = 8e-04
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 2 RMFPCPLVTCGKSFLRSEHLQEHMLQH 28
R + CP+ +C + F RS L H+ H
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIH 27
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 30
Score = 30.4 bits (69), Expect = 0.001
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 2 RMFPCPLVTCGKSFLRSEHLQEHMLQH 28
+ C C KS+ R E+L+ H+ H
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSH 27
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 30.0 bits (68), Expect = 0.002
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 4 FPCPLVTCGKSFLRSEHLQEHMLQH 28
F C CGK F RS+ LQ H H
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTH 27
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 28.9 bits (65), Expect = 0.006
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 2 RMFPCPLVTCGKSFLRSEHLQEHMLQH 28
+ F C CGK F +L+ H+ H
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIH 27
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 26.8 bits (60), Expect = 0.038
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 11 CGKSFLRSEHLQEHMLQH 28
C ++F R EHL+ H H
Sbjct: 8 CTRAFARQEHLKRHYRSH 25
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 26.2 bits (58), Expect = 0.080
Identities = 5/20 (25%), Positives = 12/20 (60%)
Query: 11 CGKSFLRSEHLQEHMLQHNE 30
C K+F + + L H ++++
Sbjct: 14 CDKTFRQKQLLDMHFKRYHD 33
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 35
Score = 25.9 bits (57), Expect = 0.086
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 5 PCPLVTCGKSFLRSEHLQEHMLQHNEN 31
P C +F + H+ H +
Sbjct: 7 PFVCRICLSAFTTKANCARHLKVHTDT 33
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 25.7 bits (57), Expect = 0.098
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 11 CGKSFLRSEHLQEHMLQH 28
CGK+F RS L +H H
Sbjct: 13 CGKAFSRSSILVQHQRVH 30
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 25.6 bits (57), Expect = 0.100
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 11 CGKSFLRSEHLQEHMLQH 28
C ++F RS+HL H+ H
Sbjct: 9 CMRNFSRSDHLTTHIRTH 26
>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 25.6 bits (56), Expect = 0.13
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 2 RMFPCPLVTCGKSFLRSEHLQEHMLQH 28
+ F C CG+ F +HL H +H
Sbjct: 5 KPFLCTAPGCGQRFTNEDHLAVHKHKH 31
>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 53
Score = 25.7 bits (56), Expect = 0.14
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 3 MFPCPLVTCGKSFLRSEHLQEHMLQH 28
+ PC L CGK F + L++H QH
Sbjct: 6 ILPCGL--CGKVFTDANRLRQHEAQH 29
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 25.8 bits (56), Expect = 0.14
Identities = 13/47 (27%), Positives = 15/47 (31%), Gaps = 3/47 (6%)
Query: 11 CGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLK 57
CGKSF HM H C + K L H+K
Sbjct: 8 CGKSFTHKSQRDRHMSMHLGL---RPYGCGVCGKKFKMKHHLVGHMK 51
Score = 23.1 bits (49), Expect = 1.7
Identities = 9/18 (50%), Positives = 9/18 (50%)
Query: 11 CGKSFLRSEHLQEHMLQH 28
CGK F HL HM H
Sbjct: 36 CGKKFKMKHHLVGHMKIH 53
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 25.4 bits (55), Expect = 0.17
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 10 TCGKSFLRSEHLQEHMLQHNENKP 33
CGK F HL H L H+ KP
Sbjct: 10 ICGKIFRDVYHLNRHKLSHSGEKP 33
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 24.9 bits (55), Expect = 0.18
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 11 CGKSFLRSEHLQEHMLQH 28
C F +S ++ H+LQ
Sbjct: 14 CHARFTQSGTMKMHILQK 31
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 24.6 bits (54), Expect = 0.30
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 11 CGKSFLRSEHLQEHM-LQHNENKPKFTC 37
CGK F R +HL H+ H +P C
Sbjct: 11 CGKGFSRPDHLNGHIKQVHTSERP-HKC 37
>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 24.4 bits (53), Expect = 0.30
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 35 FTCPYQDCLMSYVAKSSLYAHLKHVH 60
+ C C Y SSL H+K VH
Sbjct: 3 YVCKLPGCTKRYTDPSSLRKHVKTVH 28
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 24.2 bits (53), Expect = 0.36
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 11 CGKSFLRSEHLQEHMLQHNENK 32
C K F+RS+HL +H+ H K
Sbjct: 8 CPKRFMRSDHLSKHIKTHQNKK 29
>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 30
Score = 23.5 bits (50), Expect = 0.67
Identities = 11/27 (40%), Positives = 12/27 (44%)
Query: 2 RMFPCPLVTCGKSFLRSEHLQEHMLQH 28
+ FPC C K F HL H L H
Sbjct: 1 KPFPCKEEGCEKGFTSLHHLTRHSLTH 27
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 22.9 bits (50), Expect = 0.96
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 11 CGKSFLRSEHLQEHMLQH 28
CGK+F ++ L H H
Sbjct: 8 CGKAFSQNSGLINHQRIH 25
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 22.7 bits (48), Expect = 1.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 11 CGKSFLRSEHLQEHMLQH 28
CGK+F+ S L+ H L H
Sbjct: 8 CGKAFVESSKLKRHQLVH 25
>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 31
Score = 21.9 bits (46), Expect = 3.1
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 1 MRMFPCPLVTCGKSFLRSEHLQEHMLQH 28
M+ + C CG ++ ++ LQ H+ +H
Sbjct: 1 MKRYICSFADCGAAYNKNWKLQAHLSKH 28
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 21.6 bits (46), Expect = 3.8
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 11 CGKSFLRSEHLQEHMLQH 28
C +SF RS+HL H +H
Sbjct: 17 CDRSFSRSDHLALHRKRH 34
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 37
Score = 21.2 bits (45), Expect = 5.2
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 2 RMFPCPLVTCGKSFLRSEHLQEHMLQHNENKPK 34
R + C C + F ++ L HM H ++ +
Sbjct: 4 RSYTCS--FCKREFRSAQALGGHMNVHRRDRAR 34
>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase
{Alfalfa (Medicago sativa) [TaxId: 3879]}
Length = 227
Score = 22.4 bits (47), Expect = 6.0
Identities = 6/16 (37%), Positives = 12/16 (75%)
Query: 13 KSFLRSEHLQEHMLQH 28
KS L+S+ L +++L+
Sbjct: 1 KSLLQSDALYQYILET 16
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 21.4 bits (45), Expect = 6.6
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 2 RMFPCPLVTCGKSFLRSEHLQEHMLQHNENK 32
+ F C C K+F R +++ H+ H E++
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>d1v32a_ a.42.1.1 (A:) Hypothetical protein AT5G08430
(rafl09-47-k03) {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 101
Score = 21.7 bits (46), Expect = 8.8
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 19 EHLQEHMLQHNENKPKFTC 37
+++ + L NK K C
Sbjct: 46 KYISKEGLLDPSNKKKVVC 64
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.132 0.428
Gapped
Lambda K H
0.267 0.0516 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 227,779
Number of extensions: 7436
Number of successful extensions: 81
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 52
Length of query: 66
Length of database: 2,407,596
Length adjustment: 35
Effective length of query: 31
Effective length of database: 1,927,046
Effective search space: 59738426
Effective search space used: 59738426
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.4 bits)