Query psy17782
Match_columns 256
No_of_seqs 261 out of 1295
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 22:52:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17782.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17782hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3953|consensus 100.0 1.7E-37 3.6E-42 253.7 15.5 207 37-246 26-242 (242)
2 smart00449 SPRY Domain in SPla 99.9 1.7E-24 3.7E-29 166.1 14.8 117 80-204 1-120 (122)
3 PF00622 SPRY: SPRY domain; I 99.9 3E-22 6.5E-27 153.6 15.9 117 80-204 1-119 (124)
4 KOG0349|consensus 99.8 2.3E-21 5E-26 172.2 8.7 156 37-207 88-245 (725)
5 KOG4367|consensus 99.8 1.3E-17 2.9E-22 147.4 14.5 154 37-204 534-691 (699)
6 KOG2626|consensus 99.7 4.1E-17 8.8E-22 148.0 9.1 155 38-206 293-492 (544)
7 KOG4030|consensus 99.7 8E-16 1.7E-20 118.7 13.5 143 36-198 27-170 (197)
8 cd03743 SOCS_SSB4 SOCS (suppre 99.0 3.6E-10 7.7E-15 69.5 3.1 39 208-246 1-42 (42)
9 cd03733 SOCS_WSB_SWIP SOCS (su 99.0 5.1E-10 1.1E-14 67.8 3.3 37 210-246 3-39 (39)
10 cd03746 SOCS_WSB1_SWIP1 SOCS ( 99.0 6.5E-10 1.4E-14 67.6 3.6 37 210-246 3-39 (40)
11 cd03718 SOCS_SSB1_4 SOCS (supp 99.0 5.6E-10 1.2E-14 68.9 3.4 39 208-246 1-42 (42)
12 cd03717 SOCS_SOCS_like SOCS (s 99.0 8E-10 1.7E-14 67.2 3.9 37 209-245 2-38 (39)
13 cd03744 SOCS_SSB1 SOCS (suppre 99.0 5.9E-10 1.3E-14 68.6 3.1 39 208-246 1-42 (42)
14 cd03719 SOCS_SSB2 SOCS (suppre 98.9 6.8E-10 1.5E-14 68.0 3.0 38 209-246 2-42 (42)
15 cd03742 SOCS_Rab40 SOCS (suppr 98.9 1.2E-09 2.7E-14 66.9 3.6 37 209-245 2-38 (43)
16 cd03740 SOCS_SOCS6 SOCS (suppr 98.9 1.7E-09 3.7E-14 66.2 3.6 36 210-245 3-38 (41)
17 PF13765 PRY: SPRY-associated 98.9 3.7E-09 8.1E-14 67.8 4.7 40 38-78 1-49 (49)
18 smart00253 SOCS suppressors of 98.9 3.2E-09 6.9E-14 66.0 4.1 37 209-245 6-42 (43)
19 cd03728 SOCS_ASB_9_11 SOCS (su 98.9 1.7E-09 3.8E-14 66.4 2.8 37 210-246 3-42 (42)
20 cd03738 SOCS_SOCS4 SOCS (suppr 98.9 3.7E-09 7.9E-14 68.4 4.2 37 209-245 2-38 (56)
21 cd03729 SOCS_ASB13 SOCS (suppr 98.8 2.7E-09 5.8E-14 65.8 3.4 38 209-246 2-42 (42)
22 cd03726 SOCS_ASB7 SOCS (suppre 98.8 2.5E-09 5.4E-14 66.7 3.3 38 210-247 3-43 (45)
23 cd03724 SOCS_ASB5 SOCS (suppre 98.8 2.5E-09 5.5E-14 65.6 2.9 38 209-246 2-42 (42)
24 cd03739 SOCS_SOCS5 SOCS (suppr 98.8 5.2E-09 1.1E-13 67.8 4.3 37 209-245 2-38 (57)
25 cd03745 SOCS_WSB2_SWIP2 SOCS ( 98.8 3.7E-09 8.1E-14 63.7 3.4 37 210-246 3-39 (39)
26 cd03741 SOCS_SOCS7 SOCS (suppr 98.8 4.2E-09 9E-14 66.9 3.7 37 210-246 3-39 (49)
27 PF07525 SOCS_box: SOCS box; 98.8 2.3E-09 5E-14 65.6 2.4 37 210-246 1-40 (40)
28 cd03725 SOCS_ASB6 SOCS (suppre 98.8 4.6E-09 9.9E-14 65.3 3.4 37 209-245 2-42 (44)
29 cd03727 SOCS_ASB8 SOCS (suppre 98.8 4.2E-09 9.2E-14 64.5 3.1 36 209-244 2-41 (43)
30 cd03720 SOCS_ASB1 SOCS (suppre 98.8 3.5E-09 7.7E-14 65.1 2.7 38 209-246 2-42 (42)
31 cd03721 SOCS_ASB2 SOCS (suppre 98.8 4.1E-09 8.8E-14 65.9 3.0 37 210-246 3-42 (45)
32 cd03716 SOCS_ASB_like SOCS (su 98.8 5.6E-09 1.2E-13 64.6 3.5 38 209-246 2-42 (42)
33 cd03735 SOCS_SOCS1 SOCS (suppr 98.8 7.9E-09 1.7E-13 63.6 4.1 36 210-245 3-38 (43)
34 KOG2243|consensus 98.7 3.4E-08 7.3E-13 97.6 9.1 108 76-195 1101-1215(5019)
35 cd03587 SOCS SOCS (suppressors 98.7 9E-09 1.9E-13 63.4 3.4 36 210-245 2-40 (41)
36 cd03723 SOCS_ASB4_ASB18 SOCS ( 98.7 8.2E-09 1.8E-13 65.5 3.3 39 209-247 2-43 (48)
37 cd03730 SOCS_ASB14 SOCS (suppr 98.7 1.5E-08 3.4E-13 66.2 4.1 37 210-246 3-45 (57)
38 cd03722 SOCS_ASB3 SOCS (suppre 98.7 1.5E-08 3.3E-13 64.9 3.7 38 210-247 3-46 (51)
39 cd03731 SOCS_ASB15 SOCS (suppr 98.6 2.5E-08 5.3E-13 65.1 3.3 38 209-246 2-45 (56)
40 cd03736 SOCS_SOCS2 SOCS (suppr 98.6 8.4E-08 1.8E-12 58.7 4.1 34 210-245 3-36 (41)
41 cd03734 SOCS_CIS1 SOCS (suppre 98.5 1.6E-07 3.4E-12 57.3 4.0 34 210-245 3-36 (41)
42 smart00589 PRY associated with 98.2 1.6E-06 3.5E-11 55.9 4.1 40 38-78 4-52 (52)
43 cd03737 SOCS_SOCS3 SOCS (suppr 98.0 3.9E-06 8.5E-11 51.4 2.4 34 210-245 3-37 (42)
44 KOG1477|consensus 96.5 0.0098 2.1E-07 55.7 7.5 155 39-204 33-199 (469)
45 PF07177 Neuralized: Neuralize 95.8 0.069 1.5E-06 36.5 7.1 64 38-105 2-67 (69)
46 KOG2243|consensus 95.5 0.014 3E-07 59.7 3.9 119 81-203 677-808 (5019)
47 KOG2177|consensus 95.1 0.12 2.7E-06 44.5 8.4 145 38-198 207-367 (386)
48 smart00588 NEUZ domain in neur 92.8 2.1 4.6E-05 32.7 10.1 65 38-106 3-69 (123)
49 PF01847 VHL: von Hippel-Linda 88.3 1 2.2E-05 35.8 4.8 57 186-245 77-133 (156)
50 PHA02956 hypothetical protein; 76.6 2 4.4E-05 33.2 2.2 33 210-242 154-186 (189)
51 KOG1477|consensus 67.8 5.7 0.00012 37.5 3.4 70 140-214 18-88 (469)
52 PF15409 PH_8: Pleckstrin homo 64.2 19 0.00041 25.9 4.8 22 153-174 16-37 (89)
53 KOG4625|consensus 57.1 51 0.0011 31.7 7.5 125 46-179 109-239 (595)
54 PF11393 IcmL: Macrophage kill 50.9 15 0.00032 27.3 2.5 21 70-90 85-105 (108)
55 KOG2242|consensus 47.7 2.9 6.2E-05 40.3 -2.2 126 117-244 120-264 (558)
56 PHA02698 hypothetical protein; 42.4 9.8 0.00021 26.2 0.3 22 1-22 18-39 (89)
57 smart00135 LY Low-density lipo 32.7 95 0.0021 17.6 3.7 26 152-177 10-35 (43)
58 PF08893 DUF1839: Domain of un 32.3 91 0.002 27.8 4.8 71 151-227 122-203 (319)
59 COG0139 HisI Phosphoribosyl-AM 29.2 1.4E+02 0.003 22.4 4.6 62 95-170 29-91 (111)
60 PF10665 Minor_capsid_1: Minor 25.6 1.6E+02 0.0034 22.1 4.5 14 76-89 100-113 (114)
61 PRK00051 hisI phosphoribosyl-A 24.0 2.1E+02 0.0046 21.9 4.9 62 95-170 25-87 (125)
62 COG5513 Predicted secreted pro 20.8 3.7E+02 0.008 20.1 6.0 15 79-93 70-84 (113)
No 1
>KOG3953|consensus
Probab=100.00 E-value=1.7e-37 Score=253.74 Aligned_cols=207 Identities=29% Similarity=0.485 Sum_probs=183.5
Q ss_pred ceeEeCCCCCCCEEEecCCCceEEeCCCCCCCcceEEecccccCceEEEEEEEeccccCceEEEEEEecccccccccccc
Q psy17782 37 WWTWDRNDKSPDTKLFGKNHRTVNFHPTWSKGAAGIRGTRQLNNGRYYWELATSQRLFGTSMMFGIGTRKARIHQNAFIN 116 (256)
Q Consensus 37 ~~~ld~~~~~~~l~ls~d~~~~v~~~p~r~~~~~~V~g~~~~~sG~hYWEV~v~~~~~~~~~~vGv~~~~~~~~~~~~~~ 116 (256)
.+.|++++++.++.+..++..++++||.. .++++++|+.+++.|+|+|||.|..++.||+.+|||+++.++++..++..
T Consensus 26 ~~~w~~~drs~nv~vk~~~~~tfhrhpva-qstd~~rGk~g~~~g~h~w~i~w~~r~~GT~avVGIaTk~Aplha~gy~a 104 (242)
T KOG3953|consen 26 QHGWSPSDRSLNVFVKLPDGLTFHRHPVA-QSTDGIRGKRGYSRGRHAWEIAWPNRQRGTHAVVGIATKVAPLHAVGYTA 104 (242)
T ss_pred hhccCcccccceeEEecCCcceEEecCCc-cccccccceeeeccCceEEEEEecCCccCCcceEEEEcccCchhhhHHHH
Confidence 48999999999999998867999999986 45899999999999999999999999999999999999999999988889
Q ss_pred ccCCCCceeEEEeC-cEEEeCCeee-ecCCCCC---CCCCCEEEEEEeCCCCEEEEEEcCeeeeeeeeccccCCCceEEE
Q psy17782 117 LIGKDEHSWGLSHK-GLIFHGGKFY-NYTKPFP---ENEATRIGVLFDGIAGTLSFYKDGEYLGIAFQGLQHVQEPLYPM 191 (256)
Q Consensus 117 ~lG~~~~sw~~~~~-g~~~h~~~~~-~~~~~~~---~~~~~~IGv~LD~~~G~lsFy~~g~~lg~af~~~~~f~~~lyP~ 191 (256)
++|.|++||||... +.+||++... .|+.... ...+++|+|.|||++|+|+|+.+++.||+||++++ ..+|||+
T Consensus 105 LlGs~~qswGw~l~~~~l~H~g~~~~~yp~~~~~p~~~vp~ri~viLDm~egtl~F~~~~e~LGvAFRgL~--~~~LYP~ 182 (242)
T KOG3953|consen 105 LLGSNSQSWGWDLGRNVLYHDGQVAGLYPALNRQPKYNVPDRILVILDMIEGTLSFAADGEYLGVAFRGLK--DKKLYPA 182 (242)
T ss_pred HhCCCCCccceecccceeeecCccccccccccCCchhcCCceEEEEEeeccceEEEEECCeEEeeeecCCC--CCcceee
Confidence 99999999999975 4899998322 2332111 24789999999999999999999999999999876 5799999
Q ss_pred EeecCCceeEEEeeec----ccccchhHHHHHHHHhccCc-CCcCcCCCChhHHHHHHHh
Q psy17782 192 ICSTAVKTQISLEVAR----RDFINLQDRCRSIIIKTMNQ-ADLDLVKLPTPIRTYIEEA 246 (256)
Q Consensus 192 ~~~~~~~~~v~l~~~~----~~~~sLq~lcr~~Ir~~~~~-~~i~~l~LP~~l~~~l~~~ 246 (256)
+|..+++++|++.+.. ..+.++..+||+++|..+++ ..|..+++|+.+|.|++|+
T Consensus 183 Vsav~g~~Evtm~Ylg~~~~~e~~~~~~~~r~~~r~~~~~~~~i~~l~~~~~~k~~~l~~ 242 (242)
T KOG3953|consen 183 VSAVWGHCEVTMKYLGTLDVDEPDPLANLCRRRLRSSLGGDELITALVHEPCDKYYLLYQ 242 (242)
T ss_pred eeehhcceeEEEEEeCCcCcCCccccchhhhhhhhhccCCcccccccccchhhcchhccC
Confidence 9999999999999743 45789999999999999998 7799999999999999874
No 2
>smart00449 SPRY Domain in SPla and the RYanodine Receptor. Domain of unknown function. Distant homologues are domains in butyrophilin/marenostrin/pyrin homologues.
Probab=99.92 E-value=1.7e-24 Score=166.07 Aligned_cols=117 Identities=31% Similarity=0.584 Sum_probs=94.9
Q ss_pred CceEEEEEEEeccccCceEEEEEEeccccccccccccccCCCCceeEEEeCc-EEEeCCeeeecCCCCCCCCCCEEEEEE
Q psy17782 80 NGRYYWELATSQRLFGTSMMFGIGTRKARIHQNAFINLIGKDEHSWGLSHKG-LIFHGGKFYNYTKPFPENEATRIGVLF 158 (256)
Q Consensus 80 sG~hYWEV~v~~~~~~~~~~vGv~~~~~~~~~~~~~~~lG~~~~sw~~~~~g-~~~h~~~~~~~~~~~~~~~~~~IGv~L 158 (256)
+|+|||||+|.+. ..|+||||++.+++.. ...+|.+..||+++.++ ..||+.....++.++. ..+|+|||+|
T Consensus 1 sG~~YwEV~v~~~---~~~~vGv~~~~~~r~~---~~~~G~~~~sw~~~~~~g~~~~~~~~~~~~~~~~-~~gd~iGv~l 73 (122)
T smart00449 1 SGRHYFEVEIFDG---GHWRVGVATKSVPRGY---FALLGEDKGSWGYDGDGGKKYHNSTGPEYGLPLQ-EPGDVIGCFL 73 (122)
T ss_pred CCcEEEEEEEcCC---CeEEEEEEcCccCCCc---cccCCCCCCEEEEEcCCCcEEeCCCCCccCcccc-CCCCEEEEEE
Confidence 6999999999984 4799999999988632 34799999999999865 7888876555555543 2489999999
Q ss_pred eCCCCEEEEEEcCeee-eeeeeccccCCCceEEEEeecCC-ceeEEEe
Q psy17782 159 DGIAGTLSFYKDGEYL-GIAFQGLQHVQEPLYPMICSTAV-KTQISLE 204 (256)
Q Consensus 159 D~~~G~lsFy~~g~~l-g~af~~~~~f~~~lyP~~~~~~~-~~~v~l~ 204 (256)
|+++|+|+||+|++.+ +++|.. ..|+++|||+|++... ..+++++
T Consensus 74 D~~~g~l~F~~ng~~~~~~~f~~-~~~~~~l~P~~~~~~~~~~~~n~g 120 (122)
T smart00449 74 DLEAGTISFYKNGKYLHGLAFFD-VKFSGPLYPAVSLGSGCSVRLNFG 120 (122)
T ss_pred ECCCCEEEEEECCCEeeeEEEec-cCCCCcEeeEEEcCCCCEEEEEec
Confidence 9999999999999987 788875 4588899999999765 3555654
No 3
>PF00622 SPRY: SPRY domain; InterPro: IPR003877 The SPRY domain is of unknown function. Distant homologues are domains in butyrophilin/marenostrin/pyrin []. Ca2+-release from the sarcoplasmic or endoplasmic reticulum, the intracellular Ca2+ store, is mediated by the ryanodine receptor (RyR) and/or the inositol trisphosphate receptor (IP3R).; GO: 0005515 protein binding; PDB: 2V24_A 3EK9_A 2AFJ_A 2IWG_E 3EMW_A 2WL1_A 3TOJ_B 2VOK_A 2VOL_B 2FNJ_A ....
Probab=99.89 E-value=3e-22 Score=153.61 Aligned_cols=117 Identities=36% Similarity=0.659 Sum_probs=92.8
Q ss_pred CceEEEEEEEeccccCceEEEEEEeccccccccccccccCCCCceeEEEeCc-EEEeCCeeeecCCCCCCCCCCEEEEEE
Q psy17782 80 NGRYYWELATSQRLFGTSMMFGIGTRKARIHQNAFINLIGKDEHSWGLSHKG-LIFHGGKFYNYTKPFPENEATRIGVLF 158 (256)
Q Consensus 80 sG~hYWEV~v~~~~~~~~~~vGv~~~~~~~~~~~~~~~lG~~~~sw~~~~~g-~~~h~~~~~~~~~~~~~~~~~~IGv~L 158 (256)
+|+|||||+|.... .|.|||++++...+.. ...+|.+..+|++...+ ..+|+.....+...+.. .+|+|||+|
T Consensus 1 sG~~YwEV~v~~~~---~~~iGv~~~~~~~~~~--~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~dvIG~~l 74 (124)
T PF00622_consen 1 SGKHYWEVEVDSGG---SISIGVATSSASVSGD--ENLSGYDPFSWGFHGDGGKKYHGGTSEETGSPFQE-PGDVIGCGL 74 (124)
T ss_dssp SSEEEEEEEETGGC---TEEEEEEETTSEESSS--TS-TTSSTTEEEEETTTTTEEESTSSSECSCTSST-TTSEEEEEE
T ss_pred CcCEEEEEEEecCc---CEEEEEeECccccCCc--cccCCccccceeeeccccccceeeccccccccccc-CCcEEEEEE
Confidence 69999999999864 4999999998833222 34688888999999876 78888776666665542 389999999
Q ss_pred eCCCCEEEEEEcCeeee-eeeeccccCCCceEEEEeecCCceeEEEe
Q psy17782 159 DGIAGTLSFYKDGEYLG-IAFQGLQHVQEPLYPMICSTAVKTQISLE 204 (256)
Q Consensus 159 D~~~G~lsFy~~g~~lg-~af~~~~~f~~~lyP~~~~~~~~~~v~l~ 204 (256)
|+++|+|+||+||+.++ ++|+. ..++++|||+|++.. +.++.++
T Consensus 75 D~~~g~l~F~~ng~~~~~~~f~~-~~~~~~l~P~v~~~~-~~~~~~n 119 (124)
T PF00622_consen 75 DLDNGELSFYKNGKFLGIYAFTD-IDFSEPLYPAVSLGG-GQSVELN 119 (124)
T ss_dssp ETTTTEEEEEETTEEEEEEEEES-CTTSSSBEEEEEEES-TSEEEEE
T ss_pred eecccEEEEEECCccceeEEEEC-CCCCCcEEEEEEecC-CCEEEEE
Confidence 99999999999999988 88884 346789999999985 4444444
No 4
>KOG0349|consensus
Probab=99.85 E-value=2.3e-21 Score=172.16 Aligned_cols=156 Identities=22% Similarity=0.356 Sum_probs=134.7
Q ss_pred ceeEeCCCCCCCEEEecCCCceEEeCCCCCCCcceEEeccccc-CceEEEEEEEeccccCceEEEEEEeccccccccccc
Q psy17782 37 WWTWDRNDKSPDTKLFGKNHRTVNFHPTWSKGAAGIRGTRQLN-NGRYYWELATSQRLFGTSMMFGIGTRKARIHQNAFI 115 (256)
Q Consensus 37 ~~~ld~~~~~~~l~ls~d~~~~v~~~p~r~~~~~~V~g~~~~~-sG~hYWEV~v~~~~~~~~~~vGv~~~~~~~~~~~~~ 115 (256)
.|++++.+....+.|.+| ++.-+ ...+.-|.++||+.|+. .|+||+||.+.+++ -++|||++..++++
T Consensus 88 ~w~mn~~Drg~alaI~~d-GL~Cq--Sre~KeWhGcRaT~Gl~gkGK~YyEvtitd~G---LCRVGWsT~qasLd----- 156 (725)
T KOG0349|consen 88 EWKMNKQDRGLALAIDED-GLACQ--SREKKEWHGCRATAGLYGKGKYYYEVTITDKG---LCRVGWSTLQASLD----- 156 (725)
T ss_pred ccccCccccCceeeEcCC-ccccc--hhHHhhhhccccccccccCceEEEEEEeccCc---eeeechhhcccccc-----
Confidence 499999999999999999 44332 22245688999999997 79999999999985 69999999988774
Q ss_pred cccCCCCceeEEEeCcEEEeCCeeeecCCCCCCCCCCEEEEEEeCCCCEEEEEEcCeeeeeeeecccc-CCCceEEEEee
Q psy17782 116 NLIGKDEHSWGLSHKGLIFHGGKFYNYTKPFPENEATRIGVLFDGIAGTLSFYKDGEYLGIAFQGLQH-VQEPLYPMICS 194 (256)
Q Consensus 116 ~~lG~~~~sw~~~~~g~~~h~~~~~~~~~~~~~~~~~~IGv~LD~~~G~lsFy~~g~~lg~af~~~~~-f~~~lyP~~~~ 194 (256)
+|....++|++.+|++.||.++..|+++|. ..|+||||||.+.++++|.+||+.++.||+.... ..+.|||++-+
T Consensus 157 --lGt~~~gFGfGGTGkKS~nkqFDdYGe~Ft--~~DvIGCyLDld~~~v~fsKNG~~lg~AF~ip~~~kn~~lfPAvvl 232 (725)
T KOG0349|consen 157 --LGTGLDGFGFGGTGKKSTNKQFDDYGEPFT--LNDVIGCYLDLDSRTVWFSKNGEQLGAAFSIPVKYKNSNLFPAVVL 232 (725)
T ss_pred --cCccccccccCccCccccccccccccCccc--ccceeeEEEeccCceEEEecCccccceeEEcChhhcccccchheee
Confidence 899999999999999999999999999987 5699999999999999999999999999997544 36789999999
Q ss_pred cCCceeEEEeeec
Q psy17782 195 TAVKTQISLEVAR 207 (256)
Q Consensus 195 ~~~~~~v~l~~~~ 207 (256)
+++.-+++++...
T Consensus 233 kNael~fNFG~~~ 245 (725)
T KOG0349|consen 233 KNAELSFNFGSQP 245 (725)
T ss_pred ccceEEEecCCCc
Confidence 9988888887543
No 5
>KOG4367|consensus
Probab=99.76 E-value=1.3e-17 Score=147.45 Aligned_cols=154 Identities=21% Similarity=0.365 Sum_probs=123.0
Q ss_pred ceeEeCCCCCCCEEEecCCCceEEeCCCCCCCcceEEecccccCceEEEEEEEeccccCceEEEEEEecccccccccccc
Q psy17782 37 WWTWDRNDKSPDTKLFGKNHRTVNFHPTWSKGAAGIRGTRQLNNGRYYWELATSQRLFGTSMMFGIGTRKARIHQNAFIN 116 (256)
Q Consensus 37 ~~~ld~~~~~~~l~ls~d~~~~v~~~p~r~~~~~~V~g~~~~~sG~hYWEV~v~~~~~~~~~~vGv~~~~~~~~~~~~~~ 116 (256)
.+.|+|..++..+.||++ ..+++.. ......|+|+.+|+.|.|||||.|..........||||...++++ .
T Consensus 534 wfqlt~spsqrdmilsne-catlsgs---sleyrtilgsiafskgvhywevtidrhdgnsdivigvaqpavnrn-----v 604 (699)
T KOG4367|consen 534 WFQLTPSPSQRDMILSNE-CATLSGS---SLEYRTILGSIAFSKGVHYWEVTIDRHDGNSDIVIGVAQPAVNRN-----V 604 (699)
T ss_pred eeeccCCchhhceeeecc-cceeccc---ccchheeeeecccccceeEEEEEEeccCCCCCceEEecchhhhhc-----e
Confidence 478899999999999998 7777653 223568999999999999999999876545689999999988875 4
Q ss_pred ccCCCCceeEEEeCc---EEEeCCeeeecCCCCCCCCCCEEEEEEeCCCCEEEEEEcCee-eeeeeeccccCCCceEEEE
Q psy17782 117 LIGKDEHSWGLSHKG---LIFHGGKFYNYTKPFPENEATRIGVLFDGIAGTLSFYKDGEY-LGIAFQGLQHVQEPLYPMI 192 (256)
Q Consensus 117 ~lG~~~~sw~~~~~g---~~~h~~~~~~~~~~~~~~~~~~IGv~LD~~~G~lsFy~~g~~-lg~af~~~~~f~~~lyP~~ 192 (256)
.||.|...|.+..+| .+.||...++-... ...+|.+|||.||++.|++.|+.|.+. =..||++. .+-+||+|
T Consensus 605 mlgkdlhgwsmyvdgerswylhnethhnrvlg-gvtrgtvigvrldcdrgtmeytvndrqddsmaftnm---rglyypaf 680 (699)
T KOG4367|consen 605 MLGKDLHGWSMYVDGERSWYLHNETHHNRVLG-GVTRGTVIGVRLDCDRGTMEYTVNDRQDDSMAFTNM---RGLYYPAF 680 (699)
T ss_pred eecccccceeEEEcCcceeEEecccccccccc-ccccccEEEEEEeccCCceEEEeccccCCceeeecc---cceeeeee
Confidence 799999999999876 56787655421111 134689999999999999999999863 34789863 47799999
Q ss_pred eecCCceeEEEe
Q psy17782 193 CSTAVKTQISLE 204 (256)
Q Consensus 193 ~~~~~~~~v~l~ 204 (256)
++ +.+.+|++.
T Consensus 681 sv-nanssitvh 691 (699)
T KOG4367|consen 681 SV-NANSSITVH 691 (699)
T ss_pred Ee-ccCceEEEe
Confidence 97 667788876
No 6
>KOG2626|consensus
Probab=99.70 E-value=4.1e-17 Score=147.97 Aligned_cols=155 Identities=19% Similarity=0.353 Sum_probs=131.1
Q ss_pred eeEeCCCCCCCEEEecCCCceEEeCCCCCCCcceEEecccccCceEEEEEEEeccccCceEEEEEEeccccccccccccc
Q psy17782 38 WTWDRNDKSPDTKLFGKNHRTVNFHPTWSKGAAGIRGTRQLNNGRYYWELATSQRLFGTSMMFGIGTRKARIHQNAFINL 117 (256)
Q Consensus 38 ~~ld~~~~~~~l~ls~d~~~~v~~~p~r~~~~~~V~g~~~~~sG~hYWEV~v~~~~~~~~~~vGv~~~~~~~~~~~~~~~ 117 (256)
+.+...+..+.|.|++| +++++- ..++..||+++++..|.|||||.|.+...++++++||++.-.++. ..
T Consensus 293 v~l~~hdrA~ql~Is~d-rlt~tg----eKGy~MvRAshgv~~G~WYFEI~vd~~pd~~a~RlGwsq~~g~Lq-----Ap 362 (544)
T KOG2626|consen 293 VNLSWHDRAEQLKISED-RLTATG----EKGYRMVRASHGVLEGAWYFEIKVDEMPDDAAIRLGWSQLYGNLQ-----AP 362 (544)
T ss_pred hhhhhhccccccccccc-ceeeec----ccceeeeeecccccccceeEEEEeecCCCccceeeeccccccccc-----cc
Confidence 56667788999999999 998876 357789999999999999999999887778899999999988875 47
Q ss_pred cCCCCceeEEEe-CcEEEeCCeeeecCCCCCCCCCCEEEEEEeCCC----------------------------------
Q psy17782 118 IGKDEHSWGLSH-KGLIFHGGKFYNYTKPFPENEATRIGVLFDGIA---------------------------------- 162 (256)
Q Consensus 118 lG~~~~sw~~~~-~g~~~h~~~~~~~~~~~~~~~~~~IGv~LD~~~---------------------------------- 162 (256)
+|.|..||++.- +|.++|......|...|. .||+||.+++..+
T Consensus 363 vGYdkfsY~wRdk~GtKfh~s~gk~Y~~gf~--qGDvLGf~I~LP~~~~~~~~lp~~~kdk~lI~yK~~lyfe~~d~v~k 440 (544)
T KOG2626|consen 363 VGYDKFSYGWRDKKGTKFHESLGKHYSDGFG--QGDVLGFYINLPKDLSPEKYLPLTHKDKFLIKYKGHLYFEDPDNVAK 440 (544)
T ss_pred cccccccccccccCCcchhhhhhhhhhhhcc--CCceEEEEEecCCcccccccCCccccccceeeeeeeeEEEccchhhh
Confidence 999999999985 578899887777877776 7999999998754
Q ss_pred ----------CEEEEEEcCeeeeeeeeccccCCCceEEEEeecCCceeEEEeee
Q psy17782 163 ----------GTLSFYKDGEYLGIAFQGLQHVQEPLYPMICSTAVKTQISLEVA 206 (256)
Q Consensus 163 ----------G~lsFy~~g~~lg~af~~~~~f~~~lyP~~~~~~~~~~v~l~~~ 206 (256)
..|.||+||..+|.||.++-. .+..||++|+.++ +.++|++-
T Consensus 441 ~~k~l~~~pgS~I~f~KNG~~qG~Ay~ni~~-~G~YyPaIS~yks-~tv~~nfG 492 (544)
T KOG2626|consen 441 IEKTLKIKPGSEIEFFKNGVSQGVAYENIYK-AGAYYPAISIYKS-CTVKFNFG 492 (544)
T ss_pred hhhccccCCCceEEEeecccchhhhhhhhhc-cccccceeeeccc-ceEEEecc
Confidence 278999999999999997431 4789999998654 77888753
No 7
>KOG4030|consensus
Probab=99.69 E-value=8e-16 Score=118.68 Aligned_cols=143 Identities=23% Similarity=0.409 Sum_probs=115.4
Q ss_pred CceeEeCCCCCCCEEEecCCCceEEeCCCCCCCcceEEecccccCceEEEEEEEeccccCceEEEEEEeccccccccccc
Q psy17782 36 DWWTWDRNDKSPDTKLFGKNHRTVNFHPTWSKGAAGIRGTRQLNNGRYYWELATSQRLFGTSMMFGIGTRKARIHQNAFI 115 (256)
Q Consensus 36 ~~~~ld~~~~~~~l~ls~d~~~~v~~~p~r~~~~~~V~g~~~~~sG~hYWEV~v~~~~~~~~~~vGv~~~~~~~~~~~~~ 115 (256)
+.++||.....+.+.|-.. ++. ..++.+++++.++...+.||||++... ..|.||++++..+++.
T Consensus 27 P~V~LD~~hMG~dVvilk~-g~R-------icGtGG~lAtaPlvQnKsYFevkiQ~t---G~WgiGlat~q~~l~~---- 91 (197)
T KOG4030|consen 27 PTVRLDVGHMGKDVVILKE-GER-------ICGTGGALATAPLVQNKSYFEVKIQQT---GTWGIGLATKQSPLDK---- 91 (197)
T ss_pred CcEEeehhccCCcEEEEec-CcE-------EeccCceeeeeeeecccceEEEEEeec---ceeeeeeeeccCcccc----
Confidence 4689999999999877665 443 357789999999999999999999985 3799999999988875
Q ss_pred cccCCCCceeEEEeCcEEEeCCeee-ecCCCCCCCCCCEEEEEEeCCCCEEEEEEcCeeeeeeeeccccCCCceEEEEee
Q psy17782 116 NLIGKDEHSWGLSHKGLIFHGGKFY-NYTKPFPENEATRIGVLFDGIAGTLSFYKDGEYLGIAFQGLQHVQEPLYPMICS 194 (256)
Q Consensus 116 ~~lG~~~~sw~~~~~g~~~h~~~~~-~~~~~~~~~~~~~IGv~LD~~~G~lsFy~~g~~lg~af~~~~~f~~~lyP~~~~ 194 (256)
...|.+..||+++-+|...||+++. ..+.......+|+|||..|.- +|.||.||+.+-..+++ ..+++||.+.+
T Consensus 92 ~p~g~d~~sw~~r~dga~~hnnee~~r~pa~~~p~EGDvVGvayDHV--ELnfY~NGKn~e~p~~g---vRG~vyPvvYV 166 (197)
T KOG4030|consen 92 VPGGCDEKSWGIRDDGAIAHNNEEVARMPATVFPEEGDVVGVAYDHV--ELNFYVNGKNVEDPITG---VRGPVYPVVYV 166 (197)
T ss_pred CCCCCcceeEEEccCCchhcccHHHhcCccccCCccCcEEEEEeeeE--EEEEEEcCceecccccc---cccceeeEEEe
Confidence 3589999999999899999998764 222221134799999998855 99999999998887875 34799999998
Q ss_pred cCCc
Q psy17782 195 TAVK 198 (256)
Q Consensus 195 ~~~~ 198 (256)
..+.
T Consensus 167 ddsA 170 (197)
T KOG4030|consen 167 DDSA 170 (197)
T ss_pred CCce
Confidence 6543
No 8
>cd03743 SOCS_SSB4 SOCS (suppressors of cytokine signaling) box of SSB4 (SPRY domain-containing SOCS box proteins)-like proteins. SSB proteins contain a central SPRY domain and a C-terminal SOCS. SSB4 has been shown to bind to MET, the receptor protein-tyrosine kinase for hepatocyte growth factor (HGF). SSB4, like SSB2 and SSB1, also interacts with prostate apoptosis response protein-4. Both types of interactions are mediated through the SPRY domain. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=98.99 E-value=3.6e-10 Score=69.54 Aligned_cols=39 Identities=18% Similarity=0.451 Sum_probs=35.9
Q ss_pred ccccchhHHHHHHHHhccCc---CCcCcCCCChhHHHHHHHh
Q psy17782 208 RDFINLQDRCRSIIIKTMNQ---ADLDLVKLPTPIRTYIEEA 246 (256)
Q Consensus 208 ~~~~sLq~lcr~~Ir~~~~~---~~i~~l~LP~~l~~~l~~~ 246 (256)
|+|.+|+++||.+||+++|. ..|++|+||+.+|+||+|+
T Consensus 1 p~P~sL~~lCRl~IR~~lg~~~l~~I~~L~LP~~Lk~yLly~ 42 (42)
T cd03743 1 PEPLPLMDLCRRSARQALGRHRLHHIQSLPLPQTLKNYLQYQ 42 (42)
T ss_pred CCCcCHHHHHHHHHHHHHhHhhhccCccCCCCHHHHHHHccC
Confidence 46899999999999999998 5899999999999999874
No 9
>cd03733 SOCS_WSB_SWIP SOCS (suppressors of cytokine signaling) box of WSB/SWiP-like proteins. This subfamily contains WSB-1 (SOCS-box-containing WD-40 protein), part of an E3 ubiquitin ligase for the thyroid-hormone-activating type 2 iodothyronine deiodinase (D2), and SWiP-1 (SOCS box and WD-repeats in Protein), a WD40-containing protein that is expressed in embryonic structures of chickens and regulated by Sonic Hedgehog (Shh), as well as, their isoforms WSB-2 and SWiP-2. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=98.97 E-value=5.1e-10 Score=67.76 Aligned_cols=37 Identities=16% Similarity=0.398 Sum_probs=34.7
Q ss_pred ccchhHHHHHHHHhccCcCCcCcCCCChhHHHHHHHh
Q psy17782 210 FINLQDRCRSIIIKTMNQADLDLVKLPTPIRTYIEEA 246 (256)
Q Consensus 210 ~~sLq~lcr~~Ir~~~~~~~i~~l~LP~~l~~~l~~~ 246 (256)
+.+||++||.+|+++++.+.|..||||+.||+||.|+
T Consensus 3 v~sLqhLCR~~Ir~~~~~~~i~~LpLP~~Lk~YL~y~ 39 (39)
T cd03733 3 VSSLQHLCRMALRRVMTTQQVLALPIPKKMKEFLTYR 39 (39)
T ss_pred CCCHHHHHHHHHHHHccccccccCCCCHHHHHHHccC
Confidence 5799999999999999998999999999999999874
No 10
>cd03746 SOCS_WSB1_SWIP1 SOCS (suppressors of cytokine signaling) box of WSB1/SWiP1-like proteins. This subfamily contains WSB-1 (SOCS-box-containing WD-40 protein), part of an E3 ubiquitin ligase for the thyroid-hormone-activating type 2 iodothyronine deiodinase (D2) and SWiP-1 (SOCS box and WD-repeats in Protein), a WD40-containing protein that is expressed in embryonic structures of chickens and regulated by Sonic Hedgehog (Shh). The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=98.97 E-value=6.5e-10 Score=67.65 Aligned_cols=37 Identities=19% Similarity=0.402 Sum_probs=35.0
Q ss_pred ccchhHHHHHHHHhccCcCCcCcCCCChhHHHHHHHh
Q psy17782 210 FINLQDRCRSIIIKTMNQADLDLVKLPTPIRTYIEEA 246 (256)
Q Consensus 210 ~~sLq~lcr~~Ir~~~~~~~i~~l~LP~~l~~~l~~~ 246 (256)
+.+||++||.+|+++++...|..||||+.||+||.|+
T Consensus 3 v~sLQhLCR~~Ir~~~~~~~i~~LpLP~~Lk~YL~y~ 39 (40)
T cd03746 3 VASLQHLCRMAIRRVMPTQQVKELPIPSKLLEFLTYR 39 (40)
T ss_pred CcCHHHHHHHHHHHHccccccccCCCCHHHHHHHhcc
Confidence 5799999999999999998999999999999999885
No 11
>cd03718 SOCS_SSB1_4 SOCS (suppressors of cytokine signaling) box of SSB1 and SSB4 (SPRY domain-containing SOCS box proteins)-like proteins. SSB proteins contain a central SPRY domain and a C-terminal SOCS. SSB1 and SSB4 has been shown to bind to MET, the receptor protein-tyrosine kinase for hepatocyte growth factor (HGF) and also interacts with prostate apoptosis response protein-4. Both types of interactions are mediated through the SPRY domain. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=98.97 E-value=5.6e-10 Score=68.93 Aligned_cols=39 Identities=18% Similarity=0.463 Sum_probs=35.7
Q ss_pred ccccchhHHHHHHHHhccCc---CCcCcCCCChhHHHHHHHh
Q psy17782 208 RDFINLQDRCRSIIIKTMNQ---ADLDLVKLPTPIRTYIEEA 246 (256)
Q Consensus 208 ~~~~sLq~lcr~~Ir~~~~~---~~i~~l~LP~~l~~~l~~~ 246 (256)
++|.+||++||.+||+++|. ..|+.|+||+.+|+||+|+
T Consensus 1 ~~P~sLq~LCR~~Ir~~lg~~~~~~I~~LpLP~~Lk~yLly~ 42 (42)
T cd03718 1 PEPLPLMDLCRRRVRVALGRDRLEEIEQLPLPPSLKNYLLYQ 42 (42)
T ss_pred CCCCCHHHHHHHHHHHHhCcccccccccCCCCHHHHHHHccC
Confidence 35899999999999999988 6899999999999999874
No 12
>cd03717 SOCS_SOCS_like SOCS (suppressors of cytokine signaling) box of SOCS-like proteins. The CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. These intracellular proteins regulate the responses of immune cells to cytokines. Identified as negative regulators of the cytokine-JAK-STAT pathway, they seem to play a role in many immunological and pathological processes. The function of the SOCS box is the recruitment of the ubiquitin-transferase system. Related SOCS boxes are also present in Rab40-like proteins and insect proteins of unknown function that also contain a NEUZ (domain in neuralized proteins) domain.
Probab=98.96 E-value=8e-10 Score=67.19 Aligned_cols=37 Identities=27% Similarity=0.528 Sum_probs=34.9
Q ss_pred cccchhHHHHHHHHhccCcCCcCcCCCChhHHHHHHH
Q psy17782 209 DFINLQDRCRSIIIKTMNQADLDLVKLPTPIRTYIEE 245 (256)
Q Consensus 209 ~~~sLq~lcr~~Ir~~~~~~~i~~l~LP~~l~~~l~~ 245 (256)
.+.|||++||.+|+++++.+.|+.||||+.+|+||++
T Consensus 2 ~~~sLq~LCR~~Ir~~~~~~~i~~LpLP~~Lk~yL~~ 38 (39)
T cd03717 2 SVRSLQHLCRFVIRQCTRRDLIDQLPLPRRLKDYLKE 38 (39)
T ss_pred CCCCHHHHHHHHHHHHccccccccCCCCHHHHHHHHc
Confidence 3789999999999999999999999999999999986
No 13
>cd03744 SOCS_SSB1 SOCS (suppressors of cytokine signaling) box of SSB1 (SPRY domain-containing SOCS box proteins)-like proteins. SSB proteins contain a central SPRY domain and a C-terminal SOCS. SSB1 has been shown to bind to MET, the receptor protein-tyrosine kinase for hepatocyte growth factor (HGF), both the absence and the presence of HGF and enhances the HGF-MET-induced mitogen-activated protein kinases Erk-transcription factor Elk-1-serum response elements (SRE) pathway. SSB1, like SSB2 and SSB4, also interacts with prostate apoptosis response protein-4. Both types of interactions are mediated through the SPRY domain. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=98.95 E-value=5.9e-10 Score=68.56 Aligned_cols=39 Identities=18% Similarity=0.462 Sum_probs=36.1
Q ss_pred ccccchhHHHHHHHHhccCc---CCcCcCCCChhHHHHHHHh
Q psy17782 208 RDFINLQDRCRSIIIKTMNQ---ADLDLVKLPTPIRTYIEEA 246 (256)
Q Consensus 208 ~~~~sLq~lcr~~Ir~~~~~---~~i~~l~LP~~l~~~l~~~ 246 (256)
|+|.+|+++||.+||+++|. ..|++|+||+.+|+||+|+
T Consensus 1 p~P~sL~~LCRl~iR~~lg~~~l~~I~~L~LP~~Lk~YLly~ 42 (42)
T cd03744 1 PEPLPLMDLCRRSVRLALGRERLSEIHTLPLPASLKNYLLYQ 42 (42)
T ss_pred CCCCCHHHHHHHHHHHHHhHhhhccCcCCCCCHHHHHHHccC
Confidence 46899999999999999999 8899999999999999874
No 14
>cd03719 SOCS_SSB2 SOCS (suppressors of cytokine signaling) box of SSB2 (SPRY domain-containing SOCS box proteins)-like proteins. SSB proteins contain a central SPRY domain and a C-terminal SOCS. SSB2 has been shown to bind to MET, the receptor protein-tyrosine kinase for hepatocyte growth factor (HGF). SSB2, like SSB4 and SSB1, also interacts with prostate apoptosis response protein-4. Both types of interactions are mediated through the SPRY domain. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=98.94 E-value=6.8e-10 Score=68.00 Aligned_cols=38 Identities=13% Similarity=0.277 Sum_probs=35.5
Q ss_pred cccchhHHHHHHHHhccCc---CCcCcCCCChhHHHHHHHh
Q psy17782 209 DFINLQDRCRSIIIKTMNQ---ADLDLVKLPTPIRTYIEEA 246 (256)
Q Consensus 209 ~~~sLq~lcr~~Ir~~~~~---~~i~~l~LP~~l~~~l~~~ 246 (256)
.|.+|+++||.+||+++|+ ..|..|+||+.+|+||+|+
T Consensus 2 ~P~sL~~LcRl~IR~~lg~~~l~~i~~L~LP~~Lk~YLly~ 42 (42)
T cd03719 2 EPHSLLHLSRLCVRHALGDTRLGQVSALPLPPAMKRYLLYQ 42 (42)
T ss_pred CCCCHHHHHHHHHHHHHhHHHhccCccCCCCHHHHHHHccC
Confidence 4789999999999999999 8899999999999999874
No 15
>cd03742 SOCS_Rab40 SOCS (suppressors of cytokine signaling) box of Rab40-like proteins. Rab40 is part of the Rab family of small GTP-binding proteins that form the largest family within the Ras superfamily. Rab proteins regulate vesicular trafficking pathways, behaving as membrane-associated molecular switches. Rab40 is characterized by a SOCS box c-terminal to the GTPase domain. The SOCS boxes interact with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=98.92 E-value=1.2e-09 Score=66.94 Aligned_cols=37 Identities=24% Similarity=0.434 Sum_probs=34.5
Q ss_pred cccchhHHHHHHHHhccCcCCcCcCCCChhHHHHHHH
Q psy17782 209 DFINLQDRCRSIIIKTMNQADLDLVKLPTPIRTYIEE 245 (256)
Q Consensus 209 ~~~sLq~lcr~~Ir~~~~~~~i~~l~LP~~l~~~l~~ 245 (256)
+++|||++||.+|.+++..+.|++||||..||+||++
T Consensus 2 k~~SLQ~LCR~~I~~~t~~~~I~~LPLP~~Lk~yLke 38 (43)
T cd03742 2 KVLSLQDLCCRAIVSCTPVYLIDKLPLPVSIKSHLKS 38 (43)
T ss_pred ccccHHHHHHHHHHHhCCcchhhhCCCCHHHHHHHHh
Confidence 4789999999999999999999999999999999964
No 16
>cd03740 SOCS_SOCS6 SOCS (suppressors of cytokine signaling) box of SOCS6-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=98.89 E-value=1.7e-09 Score=66.24 Aligned_cols=36 Identities=25% Similarity=0.384 Sum_probs=34.0
Q ss_pred ccchhHHHHHHHHhccCcCCcCcCCCChhHHHHHHH
Q psy17782 210 FINLQDRCRSIIIKTMNQADLDLVKLPTPIRTYIEE 245 (256)
Q Consensus 210 ~~sLq~lcr~~Ir~~~~~~~i~~l~LP~~l~~~l~~ 245 (256)
+.|||++||.+|+++++.+.|..||||+.||+||++
T Consensus 3 v~sLqhLCR~~Ir~~~~~~~i~~LpLP~~Lk~yL~~ 38 (41)
T cd03740 3 VRSLQYLCRFVIRQYTRIDLIQKLPLPNKMKGYLLE 38 (41)
T ss_pred cccHHHHHHHHHHHHcchhhcccCCCCHHHHHHHHc
Confidence 679999999999999988999999999999999976
No 17
>PF13765 PRY: SPRY-associated domain; PDB: 3KB5_A 2VOK_A 2VOL_B 2FBE_B 2WL1_A 2IWG_E.
Probab=98.87 E-value=3.7e-09 Score=67.77 Aligned_cols=40 Identities=20% Similarity=0.295 Sum_probs=31.4
Q ss_pred eeEeCCCCCCCEEEecCCCceEEe---------CCCCCCCcceEEecccc
Q psy17782 38 WTWDRNDKSPDTKLFGKNHRTVNF---------HPTWSKGAAGIRGTRQL 78 (256)
Q Consensus 38 ~~ld~~~~~~~l~ls~d~~~~v~~---------~p~r~~~~~~V~g~~~~ 78 (256)
++|||+|||++|.||+| +++|++ +|+||+.+.+|+|+++|
T Consensus 1 ltlDp~TAh~~L~lS~d-~k~v~~~~~~~~~p~~peRF~~~~~VLg~~~F 49 (49)
T PF13765_consen 1 LTLDPNTAHPSLVLSED-GKSVRYSEQPQNYPDNPERFDHWPQVLGSEGF 49 (49)
T ss_dssp -EB-TTTS-TTEEEETT-SSEEEE-SST-S--S-TTS-SSSSEEEBS--B
T ss_pred CEECcccCCCCeEECCC-CeEEEEccCCccCCCCCCccCCcCeEEECCCC
Confidence 58999999999999999 999987 68999999999999987
No 18
>smart00253 SOCS suppressors of cytokine signalling. suppressors of cytokine signalling
Probab=98.86 E-value=3.2e-09 Score=66.02 Aligned_cols=37 Identities=22% Similarity=0.454 Sum_probs=35.2
Q ss_pred cccchhHHHHHHHHhccCcCCcCcCCCChhHHHHHHH
Q psy17782 209 DFINLQDRCRSIIIKTMNQADLDLVKLPTPIRTYIEE 245 (256)
Q Consensus 209 ~~~sLq~lcr~~Ir~~~~~~~i~~l~LP~~l~~~l~~ 245 (256)
.+.+||++||.+|+++++.+.|+.||||+.+|+||+|
T Consensus 6 ~~~sLqhLCR~~I~~~~~~~~i~~LpLP~~lk~yL~~ 42 (43)
T smart00253 6 NVPSLQHLCRFTIRRCTRTDQIKTLPLPPKLKDYLSY 42 (43)
T ss_pred CCCCHHHHHHHHHHHHcCCcCcccCCCCHHHHHHHHh
Confidence 5899999999999999999999999999999999986
No 19
>cd03728 SOCS_ASB_9_11 SOCS (suppressors of cytokine signaling) box of ASB9 and 11 proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=98.86 E-value=1.7e-09 Score=66.44 Aligned_cols=37 Identities=22% Similarity=0.418 Sum_probs=35.0
Q ss_pred ccchhHHHHHHHHhccCc---CCcCcCCCChhHHHHHHHh
Q psy17782 210 FINLQDRCRSIIIKTMNQ---ADLDLVKLPTPIRTYIEEA 246 (256)
Q Consensus 210 ~~sLq~lcr~~Ir~~~~~---~~i~~l~LP~~l~~~l~~~ 246 (256)
|.+|+++||.+||+++|. ..|++|+||+.+|+||+|+
T Consensus 3 P~sL~~LCRl~iR~~lg~~~~~~I~~L~lP~~Lk~yLly~ 42 (42)
T cd03728 3 PPSLMQLCRLCIRKCFGRKQHHKIHKLHLPEPLKHFLLYR 42 (42)
T ss_pred CcCHHHHHHHHHHHHHhHHHHccCccCCCCHHHHHHHccC
Confidence 789999999999999999 8899999999999999874
No 20
>cd03738 SOCS_SOCS4 SOCS (suppressors of cytokine signaling) box of SOCS4-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=98.85 E-value=3.7e-09 Score=68.38 Aligned_cols=37 Identities=24% Similarity=0.536 Sum_probs=34.8
Q ss_pred cccchhHHHHHHHHhccCcCCcCcCCCChhHHHHHHH
Q psy17782 209 DFINLQDRCRSIIIKTMNQADLDLVKLPTPIRTYIEE 245 (256)
Q Consensus 209 ~~~sLq~lcr~~Ir~~~~~~~i~~l~LP~~l~~~l~~ 245 (256)
+++|||++||.+|++++..+.|..||||..||+||.+
T Consensus 2 ~~fSLQHLCR~~I~~~t~~~~I~~LPLP~~LK~YLke 38 (56)
T cd03738 2 FPFSLQHICRTVICNCTTYDGIDALPIPSSMKLYLKE 38 (56)
T ss_pred CCcCHHHHHHHHHHhcCCccccccCCCCHHHHHHHHh
Confidence 6899999999999999988999999999999999974
No 21
>cd03729 SOCS_ASB13 SOCS (suppressors of cytokine signaling) box of ASB13-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=98.85 E-value=2.7e-09 Score=65.84 Aligned_cols=38 Identities=21% Similarity=0.415 Sum_probs=34.6
Q ss_pred cccchhHHHHHHHHhccCc---CCcCcCCCChhHHHHHHHh
Q psy17782 209 DFINLQDRCRSIIIKTMNQ---ADLDLVKLPTPIRTYIEEA 246 (256)
Q Consensus 209 ~~~sLq~lcr~~Ir~~~~~---~~i~~l~LP~~l~~~l~~~ 246 (256)
.|.+||++||.+||+++|. ..|+.|+||+.+|+||+|+
T Consensus 2 ~P~sLqhLCR~~Ir~~lg~~~~~~i~~L~LP~~Lk~yL~y~ 42 (42)
T cd03729 2 TPLSLQQLCRINLRKALGTRALEKIAKLNIPNRIIDYLSYN 42 (42)
T ss_pred CCCCHHHHHHHHHHHHhchhhhccCccCCCCHHHHHHHccC
Confidence 4789999999999999987 5789999999999999874
No 22
>cd03726 SOCS_ASB7 SOCS (suppressors of cytokine signaling) box of ASB7-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=98.85 E-value=2.5e-09 Score=66.74 Aligned_cols=38 Identities=24% Similarity=0.365 Sum_probs=35.4
Q ss_pred ccchhHHHHHHHHhccCc---CCcCcCCCChhHHHHHHHhc
Q psy17782 210 FINLQDRCRSIIIKTMNQ---ADLDLVKLPTPIRTYIEEAM 247 (256)
Q Consensus 210 ~~sLq~lcr~~Ir~~~~~---~~i~~l~LP~~l~~~l~~~~ 247 (256)
|.+||++||.+||+++|. +.|+.|+||+.+|+||+|+.
T Consensus 3 P~sL~~LCRl~IR~~lG~~~l~~I~~L~lP~~Lk~yLl~~~ 43 (45)
T cd03726 3 PRTLQDLCRIKIRHCIGLQNLKLLDELPIAKVMKDYLKHKF 43 (45)
T ss_pred CcCHHHHHHHHHHHHHhhhhcccCccCCCCHHHHHHHhccc
Confidence 679999999999999998 68999999999999999875
No 23
>cd03724 SOCS_ASB5 SOCS (suppressors of cytokine signaling) box of ASB5-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. ASB5 has been implicated in the initiation of arteriogenesis. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=98.83 E-value=2.5e-09 Score=65.60 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=35.3
Q ss_pred cccchhHHHHHHHHhccCc---CCcCcCCCChhHHHHHHHh
Q psy17782 209 DFINLQDRCRSIIIKTMNQ---ADLDLVKLPTPIRTYIEEA 246 (256)
Q Consensus 209 ~~~sLq~lcr~~Ir~~~~~---~~i~~l~LP~~l~~~l~~~ 246 (256)
.|.+|+++||.+||+++|. +.|+.|+||+.+|+||+|+
T Consensus 2 ~P~sL~~lCRl~iR~~lg~~~~~~I~~L~lP~~Lk~yLly~ 42 (42)
T cd03724 2 TPSSLCQLCRLCIRNYIGRSRLHLIPQLQLPTLLKNFLQYR 42 (42)
T ss_pred CCcCHHHHHHHHHHHHHhHhhhccCccCCCCHHHHHHHccC
Confidence 3789999999999999998 8899999999999999874
No 24
>cd03739 SOCS_SOCS5 SOCS (suppressors of cytokine signaling) box of SOCS5-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS5 inhibits Th2 differentiation by inhibiting IL-4 signaling. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=98.82 E-value=5.2e-09 Score=67.83 Aligned_cols=37 Identities=24% Similarity=0.485 Sum_probs=34.8
Q ss_pred cccchhHHHHHHHHhccCcCCcCcCCCChhHHHHHHH
Q psy17782 209 DFINLQDRCRSIIIKTMNQADLDLVKLPTPIRTYIEE 245 (256)
Q Consensus 209 ~~~sLq~lcr~~Ir~~~~~~~i~~l~LP~~l~~~l~~ 245 (256)
+++|||++||.+|.++++.+.|+.||||..||+||.+
T Consensus 2 ~~fSLQhLCR~~In~~t~~~~I~~LPLP~~LKdyLke 38 (57)
T cd03739 2 FPFSLQYICRAVICRCTTYDGIDALPLPSMLQDFLKE 38 (57)
T ss_pred CCcCHHHHHHHHHHHhcCCCCcccCcCCHHHHHHHHh
Confidence 6899999999999999988999999999999999975
No 25
>cd03745 SOCS_WSB2_SWIP2 SOCS (suppressors of cytokine signaling) box of WSB2/SWiP2-like proteins. This family consists of WSB-2 (SOCS-box-containing WD-40 protein) and SWiP-2 (SOCS box and WD-repeats in Protein). No functional information is available for WSB2 or SWiP-2, but limited information is available for the isoforms WSB-1 and SWiP-1. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=98.82 E-value=3.7e-09 Score=63.69 Aligned_cols=37 Identities=11% Similarity=0.340 Sum_probs=33.8
Q ss_pred ccchhHHHHHHHHhccCcCCcCcCCCChhHHHHHHHh
Q psy17782 210 FINLQDRCRSIIIKTMNQADLDLVKLPTPIRTYIEEA 246 (256)
Q Consensus 210 ~~sLq~lcr~~Ir~~~~~~~i~~l~LP~~l~~~l~~~ 246 (256)
..|||++||.+|+++++...+..||||..||+||.|+
T Consensus 3 v~SLQHLCR~~I~~~~~~~~~~~LPLP~~Lk~yL~y~ 39 (39)
T cd03745 3 LPSLRHLCRKALRHFLTTYQVLALPIPKKMKEFLTYR 39 (39)
T ss_pred cccHHHHHHHHHHHhccccccccCCCcHHHHHHHccC
Confidence 4689999999999998888889999999999999874
No 26
>cd03741 SOCS_SOCS7 SOCS (suppressors of cytokine signaling) box of SOCS7-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS7 is important in the functioning of neuronal cells. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=98.82 E-value=4.2e-09 Score=66.86 Aligned_cols=37 Identities=27% Similarity=0.494 Sum_probs=34.5
Q ss_pred ccchhHHHHHHHHhccCcCCcCcCCCChhHHHHHHHh
Q psy17782 210 FINLQDRCRSIIIKTMNQADLDLVKLPTPIRTYIEEA 246 (256)
Q Consensus 210 ~~sLq~lcr~~Ir~~~~~~~i~~l~LP~~l~~~l~~~ 246 (256)
+.|||++||.+||+++..+.|..||||..||+||.+.
T Consensus 3 v~SLQhLCR~~Ir~~~~~~~i~~LPLP~~Lk~YL~~~ 39 (49)
T cd03741 3 VQSLQHLCRFVIRKLVRRDHIPALPLPRRLIDYLREK 39 (49)
T ss_pred CccHHHHHHHHHHHHccccccccCCCCHHHHHHHhcc
Confidence 6799999999999999889999999999999999864
No 27
>PF07525 SOCS_box: SOCS box; InterPro: IPR001496 The SOCS box was first identified in SH2-domain-containing proteins of the suppressor of cytokines signalling (SOCS) family [] but was later also found in: the WSB (WD-40-repeat-containing proteins with a SOCS box) family, the SSB (SPRY domain-containing proteins with a SOCS box) family, the ASB (ankyrin-repeat-containing proteins with a SOCS box) family, and ras and ras-like GTPases []. The SOCS box found in these proteins is an about 50 amino acid carboxy-terminal domain composed of two blocks of well-conserved residues separated by between 2 and 10 non-conserved residues []. The C-terminal conserved region is an L/P-rich sequence of unknown function, whereas the N-terminal conserved region is a consensus BC box [], which binds to the Elongin BC complex [, ]. It has been proposed that this association could couple bound proteins to the ubiquitination or proteasomal compartments [].; GO: 0035556 intracellular signal transduction; PDB: 2XAI_A 2JZ3_A 2C9W_A 2FNJ_A 2IZV_A.
Probab=98.82 E-value=2.3e-09 Score=65.65 Aligned_cols=37 Identities=24% Similarity=0.454 Sum_probs=30.6
Q ss_pred ccchhHHHHHHHHhccCcCC---cCcCCCChhHHHHHHHh
Q psy17782 210 FINLQDRCRSIIIKTMNQAD---LDLVKLPTPIRTYIEEA 246 (256)
Q Consensus 210 ~~sLq~lcr~~Ir~~~~~~~---i~~l~LP~~l~~~l~~~ 246 (256)
|.+||++||.+||++++... |.+|+||..+++||+|+
T Consensus 1 p~sLq~LCR~~Ir~~l~~~~~~~i~~LpLP~~L~~yL~y~ 40 (40)
T PF07525_consen 1 PPSLQHLCRLAIRRSLGKKGLERIDKLPLPPRLKDYLLYR 40 (40)
T ss_dssp ---HHHHHHHHHHHHSSCCHGGGGGGSSS-HHHHHHHCTE
T ss_pred CccHHHHHHHHHHHHhChhhccccccCCCCHHHHHHHccC
Confidence 47899999999999999955 99999999999999864
No 28
>cd03725 SOCS_ASB6 SOCS (suppressors of cytokine signaling) box of ASB6-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. ASB6 interacts with the adaptor protein APS and recruits elongin B/C to the insulin receptor signaling complex. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=98.80 E-value=4.6e-09 Score=65.29 Aligned_cols=37 Identities=19% Similarity=0.313 Sum_probs=33.6
Q ss_pred cccchhHHHHHHHHhccCc----CCcCcCCCChhHHHHHHH
Q psy17782 209 DFINLQDRCRSIIIKTMNQ----ADLDLVKLPTPIRTYIEE 245 (256)
Q Consensus 209 ~~~sLq~lcr~~Ir~~~~~----~~i~~l~LP~~l~~~l~~ 245 (256)
.|.+||++||.+||+++|. ..|..|+||..||+||++
T Consensus 2 ~P~sLqhLCR~~Ir~~lg~~~~~~~i~~LpLP~~Lk~yLl~ 42 (44)
T cd03725 2 YPPPLKHLCRVFIRLCLRPWPVDVKVKALPLPDRLKWYLLP 42 (44)
T ss_pred CCcCHHHHHHHHHHHhcCccccccccccCCCCHHHHHHhCc
Confidence 4789999999999999985 578899999999999976
No 29
>cd03727 SOCS_ASB8 SOCS (suppressors of cytokine signaling) box of ASB8-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. Human ASB8 is highly transcribed in skeletal muscle and in lung carcinoma cell lines. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=98.80 E-value=4.2e-09 Score=64.51 Aligned_cols=36 Identities=14% Similarity=0.286 Sum_probs=33.1
Q ss_pred cccchhHHHHHHHHhccCcC----CcCcCCCChhHHHHHH
Q psy17782 209 DFINLQDRCRSIIIKTMNQA----DLDLVKLPTPIRTYIE 244 (256)
Q Consensus 209 ~~~sLq~lcr~~Ir~~~~~~----~i~~l~LP~~l~~~l~ 244 (256)
.|.+||++||.+||+.+|.+ .|..||||+.+|+||+
T Consensus 2 ~P~~Lq~LcR~aiR~~lg~~~l~~aI~~LpLP~sLK~YLl 41 (43)
T cd03727 2 APGTLKALARYAVRRSLGVQYLPEAVKQLPLPRSVKEYLL 41 (43)
T ss_pred CCcCHHHHHHHHHHHHHhhhhHHhhcccCCCCHHHHHHHc
Confidence 47899999999999999984 7999999999999985
No 30
>cd03720 SOCS_ASB1 SOCS (suppressors of cytokine signaling) box of ASB1-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=98.80 E-value=3.5e-09 Score=65.12 Aligned_cols=38 Identities=18% Similarity=0.415 Sum_probs=35.1
Q ss_pred cccchhHHHHHHHHhccCc---CCcCcCCCChhHHHHHHHh
Q psy17782 209 DFINLQDRCRSIIIKTMNQ---ADLDLVKLPTPIRTYIEEA 246 (256)
Q Consensus 209 ~~~sLq~lcr~~Ir~~~~~---~~i~~l~LP~~l~~~l~~~ 246 (256)
.|.+|+++||.+||+++|. ..|+.|+||+.+|+||+|+
T Consensus 2 ~P~sL~~LcR~~iR~~lG~~~l~~I~~L~lP~~lk~yLl~~ 42 (42)
T cd03720 2 NPRSLLSLCRIAVRRALGKQRLSLICSLPLPDPIKKFLLHE 42 (42)
T ss_pred CCCCHHHHHHHHHHHHHHHhHhccCcCCCCCHHHHHHHccC
Confidence 3789999999999999999 7899999999999999874
No 31
>cd03721 SOCS_ASB2 SOCS (suppressors of cytokine signaling) box of ASB2-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. ASB2 targets specific proteins to destruction by the proteasome in leukemia cells that have been induced to differentiate. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=98.80 E-value=4.1e-09 Score=65.89 Aligned_cols=37 Identities=19% Similarity=0.300 Sum_probs=34.6
Q ss_pred ccchhHHHHHHHHhccCc---CCcCcCCCChhHHHHHHHh
Q psy17782 210 FINLQDRCRSIIIKTMNQ---ADLDLVKLPTPIRTYIEEA 246 (256)
Q Consensus 210 ~~sLq~lcr~~Ir~~~~~---~~i~~l~LP~~l~~~l~~~ 246 (256)
|.+||++||.+||+++|. ..|.+|+||+.+|+||+|+
T Consensus 3 P~sLq~LCRl~IR~~lg~~~l~~I~~L~LP~~Lk~YLly~ 42 (45)
T cd03721 3 PRPLAHLCRLKVRTLIGINRIKLIDTLPLPPRLIRYLNHQ 42 (45)
T ss_pred CCCHHHHHHHHHHHHHhHHhhccCccCCCCHHHHHHHccc
Confidence 789999999999999997 6899999999999999875
No 32
>cd03716 SOCS_ASB_like SOCS (suppressors of cytokine signaling) box of ASB (ankyrin repeat and SOCS box) and SSB (SPRY domain-containing SOCS box proteins) protein families. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence of a variable number of repeats. SSB proteins contain a central SPRY domain and a C-terminal SOCS. Recently, it has been shown that all four SSB proteins interact with the MET, the receptor protein-tyrosine kinase for hepatocyte growth factor (HGF), and that SSB-1, SSB-2, and SSB-4 interact with prostate apoptosis response protein-4. Both types of interactions are mediated through the SPRY domain.
Probab=98.79 E-value=5.6e-09 Score=64.62 Aligned_cols=38 Identities=21% Similarity=0.363 Sum_probs=34.7
Q ss_pred cccchhHHHHHHHHhccCc---CCcCcCCCChhHHHHHHHh
Q psy17782 209 DFINLQDRCRSIIIKTMNQ---ADLDLVKLPTPIRTYIEEA 246 (256)
Q Consensus 209 ~~~sLq~lcr~~Ir~~~~~---~~i~~l~LP~~l~~~l~~~ 246 (256)
.|.+||++||.+||+++|. +.|+.|+||..+|+||+|+
T Consensus 2 ~P~sLq~LCR~~Ir~~lg~~~~~~i~~LplP~~Lk~yLl~~ 42 (42)
T cd03716 2 TPRSLQHLCRLAIRRCLGRRRLELIKKLPLPPRLKDYLLYE 42 (42)
T ss_pred CCCCHHHHHHHHHHHHhCccccccCccCCCCHHHHHHHccC
Confidence 4789999999999999987 6899999999999999863
No 33
>cd03735 SOCS_SOCS1 SOCS (suppressors of cytokine signaling) box of SOCS1-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS1, like CIS1 and SOCS3, is involved in the down-regulation of the JAK/STAT pathway. SOCS1 has a dual function as a direct potent JAK kinase inhibitor and as a component of an E3 ubiquitin-ligase complex recruiting substrates to the protein degradation machinery.
Probab=98.79 E-value=7.9e-09 Score=63.57 Aligned_cols=36 Identities=25% Similarity=0.522 Sum_probs=33.5
Q ss_pred ccchhHHHHHHHHhccCcCCcCcCCCChhHHHHHHH
Q psy17782 210 FINLQDRCRSIIIKTMNQADLDLVKLPTPIRTYIEE 245 (256)
Q Consensus 210 ~~sLq~lcr~~Ir~~~~~~~i~~l~LP~~l~~~l~~ 245 (256)
..|||++||.+|+++++.+.|+.+|||+.||+||.+
T Consensus 3 ~~sLQhLCR~tI~~~~~~~~i~~lpLP~~LKdyL~~ 38 (43)
T cd03735 3 VRPLQELCRKSIVATFGRENLARIPLNPVLKDYLKS 38 (43)
T ss_pred ccCHHHHHHHHHHHhcCccccccCcCCHHHHHHHHh
Confidence 568999999999999998888999999999999975
No 34
>KOG2243|consensus
Probab=98.75 E-value=3.4e-08 Score=97.60 Aligned_cols=108 Identities=20% Similarity=0.449 Sum_probs=85.5
Q ss_pred ccccCceEEEEEEEeccccCceEEEEEEeccccccccccccccCCCCceeEEEe-CcEEEeCCeeeecCCCCCCCCCCEE
Q psy17782 76 RQLNNGRYYWELATSQRLFGTSMMFGIGTRKARIHQNAFINLIGKDEHSWGLSH-KGLIFHGGKFYNYTKPFPENEATRI 154 (256)
Q Consensus 76 ~~~~sG~hYWEV~v~~~~~~~~~~vGv~~~~~~~~~~~~~~~lG~~~~sw~~~~-~g~~~h~~~~~~~~~~~~~~~~~~I 154 (256)
..+.+|+||||.++...+ .++|||++..+..+. -+|.|...+++.. +++.||.+.. .++..+. .+|+|
T Consensus 1101 yavkagkwyfefe~vt~g---dmrvgwarpgc~pd~-----elgadd~af~fdg~k~qrwhqg~~-~~grswq--~gdvv 1169 (5019)
T KOG2243|consen 1101 YAVKAGKWYFEFETVTAG---DMRVGWARPGCQPDQ-----ELGADDQAFAFDGFKAQRWHQGNE-HFGRSWQ--AGDVV 1169 (5019)
T ss_pred heeeccceEEEEEEeecc---ceeecccCCCCCcch-----hhCCccceeeeccchhhhhhcccc-ccccccC--CCCeE
Confidence 445689999999988753 799999999887652 4999999999986 4688998875 4777654 79999
Q ss_pred EEEEeCCCCEEEEEEcCeeee------eeeeccccCCCceEEEEeec
Q psy17782 155 GVLFDGIAGTLSFYKDGEYLG------IAFQGLQHVQEPLYPMICST 195 (256)
Q Consensus 155 Gv~LD~~~G~lsFy~~g~~lg------~af~~~~~f~~~lyP~~~~~ 195 (256)
||++|+++.++-|..||+.|+ .||.+. .....+.|..|+.
T Consensus 1170 gcmi~l~d~sm~ftlngeili~~~gselaf~d~-di~~gfipic~lg 1215 (5019)
T KOG2243|consen 1170 GCMIDLDDASMIFTLNGEILIDDKGSELAFADF-DIEDGFIPICCLG 1215 (5019)
T ss_pred EEEEecccceEEEEEcCeEEEcCCCCeeeeccc-cccCCceeeeehh
Confidence 999999999999999998653 566542 2345677888763
No 35
>cd03587 SOCS SOCS (suppressors of cytokine signaling) box. The SOCS box is found in the C-terminal region of CIS/SOCS family proteins (in combination with a SH2 domain), ASBs (ankyrin repeat-containing proteins with a SOCS box), SSBs (SPRY domain-containing proteins with a SOCS box), and WSBs (WD40 repeat-containing proteins with a SOCS box), as well as, other miscellaneous proteins. The function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=98.75 E-value=9e-09 Score=63.38 Aligned_cols=36 Identities=25% Similarity=0.419 Sum_probs=33.5
Q ss_pred ccchhHHHHHHHHhccCc---CCcCcCCCChhHHHHHHH
Q psy17782 210 FINLQDRCRSIIIKTMNQ---ADLDLVKLPTPIRTYIEE 245 (256)
Q Consensus 210 ~~sLq~lcr~~Ir~~~~~---~~i~~l~LP~~l~~~l~~ 245 (256)
+.+||++||.+||+++|. +.|+.|+||..+|+||++
T Consensus 2 p~sLq~LCR~~Ir~~lg~~~~~~i~~LpLP~~Lk~yL~~ 40 (41)
T cd03587 2 PRSLQHLCRLAIRRCLGKRRLDLIDKLPLPPRLKDYLLY 40 (41)
T ss_pred CcCHHHHHHHHHHHHHCcccccccccCCCCHHHHHHHcc
Confidence 689999999999999974 899999999999999976
No 36
>cd03723 SOCS_ASB4_ASB18 SOCS (suppressors of cytokine signaling) box of ASB4 and ASB18 proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. Asb4 was identified as imprinted gene in mice. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=98.75 E-value=8.2e-09 Score=65.48 Aligned_cols=39 Identities=26% Similarity=0.361 Sum_probs=35.2
Q ss_pred cccchhHHHHHHHHhccCc---CCcCcCCCChhHHHHHHHhc
Q psy17782 209 DFINLQDRCRSIIIKTMNQ---ADLDLVKLPTPIRTYIEEAM 247 (256)
Q Consensus 209 ~~~sLq~lcr~~Ir~~~~~---~~i~~l~LP~~l~~~l~~~~ 247 (256)
.|.|||++||.+||+++|. ..|+.|+||+.+|+||+|+.
T Consensus 2 ~P~SLqhLCR~~IR~~lg~~~~~~I~~LpLP~~Lk~YLl~~~ 43 (48)
T cd03723 2 TPRSLQHLCRCAIRKLLGSRCHKLVPQLSLPTSLKNYLLLEP 43 (48)
T ss_pred CCCCHHHHHHHHHHHHhcccccccCccCCCCHHHHHHHcCCc
Confidence 3789999999999999988 57899999999999999864
No 37
>cd03730 SOCS_ASB14 SOCS (suppressors of cytokine signaling) box of ASB14-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=98.72 E-value=1.5e-08 Score=66.22 Aligned_cols=37 Identities=24% Similarity=0.373 Sum_probs=33.6
Q ss_pred ccchhHHHHHHHHhccCcC------CcCcCCCChhHHHHHHHh
Q psy17782 210 FINLQDRCRSIIIKTMNQA------DLDLVKLPTPIRTYIEEA 246 (256)
Q Consensus 210 ~~sLq~lcr~~Ir~~~~~~------~i~~l~LP~~l~~~l~~~ 246 (256)
|.|||++||.+||++++.+ .|..||||..||+||+|+
T Consensus 3 P~sLQHLCRl~IR~~lg~~~l~~~~~i~~LpLP~~LK~YLly~ 45 (57)
T cd03730 3 PRSLKHLCRLKIRACMGRLRLRCPVFMSFLPLPNRLKAYILYK 45 (57)
T ss_pred CCCHHHHHHHHHHHHcCccccccccccccCCCCHHHHHHHHHh
Confidence 7899999999999999983 378999999999999876
No 38
>cd03722 SOCS_ASB3 SOCS (suppressors of cytokine signaling) box of ASB3-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. ABS3 has been shown to be negative regulator of TNF-R2-mediated cellular responses to TNF-alpha by direct targeting of tumor necrosis factor receptor II (TNF-R2) for ubiquitination and proteasome-mediated degradation. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=98.71 E-value=1.5e-08 Score=64.94 Aligned_cols=38 Identities=18% Similarity=0.291 Sum_probs=34.2
Q ss_pred ccchhHHHHHHHHhccCcC------CcCcCCCChhHHHHHHHhc
Q psy17782 210 FINLQDRCRSIIIKTMNQA------DLDLVKLPTPIRTYIEEAM 247 (256)
Q Consensus 210 ~~sLq~lcr~~Ir~~~~~~------~i~~l~LP~~l~~~l~~~~ 247 (256)
+.+||++||.+||+++|.. .|..||||+.+|+||.|+-
T Consensus 3 ~~sLqhLCRl~IR~~lg~~~l~~~~~i~~LpLP~~Lk~YL~y~~ 46 (51)
T cd03722 3 VPSLTHLCRLEIRSSLKSERLRSDSFICQLPLPRSLQDYLLYSD 46 (51)
T ss_pred CccHHHHHHHHHHHHcchhhcccccccccCCCCHHHHHHHhhhh
Confidence 6799999999999999973 4899999999999999863
No 39
>cd03731 SOCS_ASB15 SOCS (suppressors of cytokine signaling) box of ASB15-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. Human ASB15 is expressed predominantly in skeletal muscle and participates in the regulation of protein turnover and muscle cell development by stimulating protein synthesis and regulating differentiation of muscle cells. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=98.65 E-value=2.5e-08 Score=65.15 Aligned_cols=38 Identities=26% Similarity=0.392 Sum_probs=34.1
Q ss_pred cccchhHHHHHHHHhccCc------CCcCcCCCChhHHHHHHHh
Q psy17782 209 DFINLQDRCRSIIIKTMNQ------ADLDLVKLPTPIRTYIEEA 246 (256)
Q Consensus 209 ~~~sLq~lcr~~Ir~~~~~------~~i~~l~LP~~l~~~l~~~ 246 (256)
.|.+||++||.+||+++|. ..|+.|+||+.+|+||+|+
T Consensus 2 ~P~sL~~LCRl~IR~~lG~~~l~~~~~I~~LpLP~~Lk~YLly~ 45 (56)
T cd03731 2 NPRPLKHLCRLKIRKLMGLQKLQQPSSMKKLPLPPALKRYILYK 45 (56)
T ss_pred CCCCHHHHHHHHHHHHHhHHhhccccccccCCCCHHHHHHHhhc
Confidence 3789999999999999995 3589999999999999876
No 40
>cd03736 SOCS_SOCS2 SOCS (suppressors of cytokine signaling) box of SOCS2-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS2 has recently been shown to regulate neuronal differentiation by controlling expression of a neurogenic transcription factor, Neurogenin-1. SOCS2 binds to GH receptors and inhibits the activation of STAT5b induced by GH. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=98.58 E-value=8.4e-08 Score=58.73 Aligned_cols=34 Identities=32% Similarity=0.532 Sum_probs=30.9
Q ss_pred ccchhHHHHHHHHhccCcCCcCcCCCChhHHHHHHH
Q psy17782 210 FINLQDRCRSIIIKTMNQADLDLVKLPTPIRTYIEE 245 (256)
Q Consensus 210 ~~sLq~lcr~~Ir~~~~~~~i~~l~LP~~l~~~l~~ 245 (256)
+.+||++||.+|+++.+ .|..||||..||+||.+
T Consensus 3 ~~sLQhLCR~~I~~~~~--~i~~LpLP~~Lk~yL~~ 36 (41)
T cd03736 3 TPSLQHLCRITINKCTR--QIQELPLPTRLKDYLTE 36 (41)
T ss_pred CCCHHHHHHHHHHHhcC--CCCcCCCCHHHHHHHHH
Confidence 67999999999999865 88899999999999975
No 41
>cd03734 SOCS_CIS1 SOCS (suppressors of cytokine signaling) box of CIS (cytokine-inducible SH2 protein) 1-like proteins. Together with the SOCS proteins, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. CIS1, like SOCS1 and SOCS3, is involved in the down-regulation of the JAK/STAT pathway. CIS1 binds to cytokine receptors at STAT5-docking sites, which prohibits recruitment of STAT5 to the receptor signaling complex and results in the down-regulation of activation by STAT5.
Probab=98.51 E-value=1.6e-07 Score=57.32 Aligned_cols=34 Identities=29% Similarity=0.579 Sum_probs=30.9
Q ss_pred ccchhHHHHHHHHhccCcCCcCcCCCChhHHHHHHH
Q psy17782 210 FINLQDRCRSIIIKTMNQADLDLVKLPTPIRTYIEE 245 (256)
Q Consensus 210 ~~sLq~lcr~~Ir~~~~~~~i~~l~LP~~l~~~l~~ 245 (256)
+.+||++||.+|+++++ .|..||||..|++||.+
T Consensus 3 ~~sLQHLCR~~I~~~~~--~i~~LpLP~~L~~yL~~ 36 (41)
T cd03734 3 ARSLQHLCRLVINRLVT--DVDCLPLPRRMADYLRQ 36 (41)
T ss_pred CccHHHHHHHHHHHhcC--CcccCCCCHHHHHHHHH
Confidence 56999999999999885 78899999999999975
No 42
>smart00589 PRY associated with SPRY domains.
Probab=98.23 E-value=1.6e-06 Score=55.87 Aligned_cols=40 Identities=20% Similarity=0.296 Sum_probs=35.6
Q ss_pred eeEeCCCCCCCEEEecCCCceEEe---------CCCCCCCcceEEecccc
Q psy17782 38 WTWDRNDKSPDTKLFGKNHRTVNF---------HPTWSKGAAGIRGTRQL 78 (256)
Q Consensus 38 ~~ld~~~~~~~l~ls~d~~~~v~~---------~p~r~~~~~~V~g~~~~ 78 (256)
++||+++|+++|.||+| +++|++ +|+||..+.+|||.++|
T Consensus 4 vtld~~tA~~~l~lS~d-~~~v~~~~~~~~~~~~~~rF~~~~~VL~~~~f 52 (52)
T smart00589 4 VTLDPDTAHPYLLLSED-RRSVRYGDLKQSLPDNPERFDSYPCVLGSQGF 52 (52)
T ss_pred CEECcccCCCCeEECCC-CCEEEECCCCCCCCCCcccccCCCeEecCCcC
Confidence 79999999999999998 899885 57788888889999876
No 43
>cd03737 SOCS_SOCS3 SOCS (suppressors of cytokine signaling) box of SOCS3-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS3, like CIS1 and SOCS1, is involved in the down-regulation of the JAK/STAT pathway. SOCS3 inhibits JAK activity indirectly through recruitment to the cytokine receptors. SOCS3 has been shown to play an essential role in placental development and a non-essential role in embryo development. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=98.02 E-value=3.9e-06 Score=51.44 Aligned_cols=34 Identities=24% Similarity=0.590 Sum_probs=26.2
Q ss_pred ccchhHHHHHHHHhccCc-CCcCcCCCChhHHHHHHH
Q psy17782 210 FINLQDRCRSIIIKTMNQ-ADLDLVKLPTPIRTYIEE 245 (256)
Q Consensus 210 ~~sLq~lcr~~Ir~~~~~-~~i~~l~LP~~l~~~l~~ 245 (256)
..|||++||.+|++++.. +.+. +||..||+||.+
T Consensus 3 v~SLQHLCR~~In~~~~~~~~~~--~LP~~Lk~yL~~ 37 (42)
T cd03737 3 VSTLQHLCRKTVNGHLDSYEKRT--QLPLPIKEFLDQ 37 (42)
T ss_pred cccHHHHHHHHHHHhcCcccchh--hccHHHHHHHHh
Confidence 579999999999998754 3344 555569999973
No 44
>KOG1477|consensus
Probab=96.47 E-value=0.0098 Score=55.66 Aligned_cols=155 Identities=16% Similarity=0.175 Sum_probs=96.9
Q ss_pred eEeCCCCCCCEE-EecCCCceEEeCCCC--CCCcceEEeccccc--CceEEEEEEEeccccCceEEEEEEeccccccccc
Q psy17782 39 TWDRNDKSPDTK-LFGKNHRTVNFHPTW--SKGAAGIRGTRQLN--NGRYYWELATSQRLFGTSMMFGIGTRKARIHQNA 113 (256)
Q Consensus 39 ~ld~~~~~~~l~-ls~d~~~~v~~~p~r--~~~~~~V~g~~~~~--sG~hYWEV~v~~~~~~~~~~vGv~~~~~~~~~~~ 113 (256)
.||+...+..+. .+.| ...+.++|.. ......+.+..... .|.||||+.+.+.+....+.||......+..
T Consensus 33 ~~~~~~~~~~~~~~~~~-~gi~f~~~~~~~~~dvg~~~~~~~~~~N~~~~~Fe~~i~d~g~~~~i~i~~~~~~~~~~--- 108 (469)
T KOG1477|consen 33 EVNTINGSDFFTKNGPD-MGIAFYTPPALLYHDVGVVQAGEPLPANFGIYYFEFDILDYGIEGRIKIGFLIDSFSII--- 108 (469)
T ss_pred eEeccCCceeEEEEcCC-cceeeecCccccCCCcceeeCCCCCCcccccceeeeeHHHhhhhhceEEEEEecccccc---
Confidence 455555444443 3344 4444443321 12234455555554 4799999999876543345666666655543
Q ss_pred cccccCCCCceeEEEeC-cEEEeCCe--eeecCCCCCCCCCCEEEEEEeCCCCEEEEEEcCeeeeeeeeccccCCCceEE
Q psy17782 114 FINLIGKDEHSWGLSHK-GLIFHGGK--FYNYTKPFPENEATRIGVLFDGIAGTLSFYKDGEYLGIAFQGLQHVQEPLYP 190 (256)
Q Consensus 114 ~~~~lG~~~~sw~~~~~-g~~~h~~~--~~~~~~~~~~~~~~~IGv~LD~~~G~lsFy~~g~~lg~af~~~~~f~~~lyP 190 (256)
...|+...+|++..+ |.+.+.+. ...++.+|. .+|.||+-.+.-..++.|++++..++.+++. +...++|
T Consensus 109 --~~~g~~~~s~~y~g~~g~l~~~~~~~~~~~~~~~~--~~D~ig~~~~~~~q~i~~t~~g~~~~~~~~~---~~~~~~~ 181 (469)
T KOG1477|consen 109 --ESEGYTMNSLGYHGNSGLLDNGGAELGEEFGPTFT--TGDEIGCGINEITQEIFFTKNGTEVGEIIKP---LSPDLLE 181 (469)
T ss_pred --cccchhhhhhcccCCchhhhhhhhhhchhhcCCCC--ccceeeeccchhhheeeeccCcccccccccc---ccccccc
Confidence 247776678988864 55555232 234555554 6899999999999999999999988888763 4455666
Q ss_pred E----EeecCCceeEEEe
Q psy17782 191 M----ICSTAVKTQISLE 204 (256)
Q Consensus 191 ~----~~~~~~~~~v~l~ 204 (256)
. +++..+...|.+.
T Consensus 182 ~~~n~~~~~s~~~~I~~~ 199 (469)
T KOG1477|consen 182 ENGNLAWLFSPNEEVEVN 199 (469)
T ss_pred cccceeeEeccCceeeee
Confidence 6 5555555555544
No 45
>PF07177 Neuralized: Neuralized; InterPro: IPR006573 NEUZ is a domain of unknown function found in neuralized proteins, i.e. proteins involved in the specification of the neuroblast during cellular differentiation. ; PDB: 2YUE_A 2E63_A.
Probab=95.77 E-value=0.069 Score=36.54 Aligned_cols=64 Identities=13% Similarity=0.180 Sum_probs=37.3
Q ss_pred eeEeCCCCCCCEEEecCCCceEEeCCCCCCCcceEEecccccCceEEEEEEEec--cccCceEEEEEEec
Q psy17782 38 WTWDRNDKSPDTKLFGKNHRTVNFHPTWSKGAAGIRGTRQLNNGRYYWELATSQ--RLFGTSMMFGIGTR 105 (256)
Q Consensus 38 ~~ld~~~~~~~l~ls~d~~~~v~~~p~r~~~~~~V~g~~~~~sG~hYWEV~v~~--~~~~~~~~vGv~~~ 105 (256)
+.|.++..+.++.|++| ++++++... | ..+-|+.+.++..|.. |+|+|.+ ..+.+..+|||++.
T Consensus 2 l~FH~~~~G~nV~L~~~-~~~A~R~~s-f-~~giVFS~rPl~~~E~-~~v~I~~~~~~wsG~L~~GvT~~ 67 (69)
T PF07177_consen 2 LRFHPNVHGKNVRLSND-GTVARRVSS-F-NNGIVFSSRPLRIGEK-FEVRIDEVEPSWSGSLRIGVTSC 67 (69)
T ss_dssp --EEC-EE-TTEEE-SS-S-EEEEST--S-SS-EEEESS-B-TT-E-EEEEEEEE-SSSSS--EEEEESS
T ss_pred ccccCcccCCCEEEcCC-CeEEEeccc-C-CceEEEecCCccCCCE-EEEEEEecCCCceeEEEEeeEcc
Confidence 56777777999999998 899988333 3 4568999999986653 4565544 34566899999864
No 46
>KOG2243|consensus
Probab=95.52 E-value=0.014 Score=59.65 Aligned_cols=119 Identities=18% Similarity=0.301 Sum_probs=73.1
Q ss_pred ceEEEEEEEeccc-----cCceEEEEEEeccc----ccccccc-ccccCCCCceeEEEeCc-EEEeCCeeeecCCC--CC
Q psy17782 81 GRYYWELATSQRL-----FGTSMMFGIGTRKA----RIHQNAF-INLIGKDEHSWGLSHKG-LIFHGGKFYNYTKP--FP 147 (256)
Q Consensus 81 G~hYWEV~v~~~~-----~~~~~~vGv~~~~~----~~~~~~~-~~~lG~~~~sw~~~~~g-~~~h~~~~~~~~~~--~~ 147 (256)
-+||||.-+.... ..++.+|||+.... +-.+..+ .+.+|.|-.|||+. | .+|.+.....+..+ ..
T Consensus 677 kkwy~el~id~~dpf~tae~thlrvgwass~gyap~pggge~wggngvgddl~sygfd--glhlwsg~i~r~vas~nqhl 754 (5019)
T KOG2243|consen 677 KKWYFELIIDHTDPFLTAEATHLRVGWASSEGYAPCPGGGEEWGGNGVGDDLFSYGFD--GLHLWSGCIARAVASPNQHL 754 (5019)
T ss_pred HHHHHHHhhhcCCcceecccceeeeeeeccCCCCCCCCCcccccCCCccchhhhcCCC--cchhhcccchhhhcChhhhh
Confidence 4699998765421 24689999997532 1111111 12355566666653 4 45655544333221 11
Q ss_pred CCCCCEEEEEEeCCCCEEEEEEcCeeeeeeeeccccCCCceEEEEeecCCceeEEE
Q psy17782 148 ENEATRIGVLFDGIAGTLSFYKDGEYLGIAFQGLQHVQEPLYPMICSTAVKTQISL 203 (256)
Q Consensus 148 ~~~~~~IGv~LD~~~G~lsFy~~g~~lg~af~~~~~f~~~lyP~~~~~~~~~~v~l 203 (256)
-..-|+|.|.||..+-.+||-.||+..--.|.+. ...+-+||.++.. ++..|++
T Consensus 755 lrsddvisccldl~~psisfringqpvqgmfenf-n~dglffpv~sfs-agikvrf 808 (5019)
T KOG2243|consen 755 LRSDDVISCCLDLGAPSISFRINGQPVQGMFENF-NIDGLFFPVMSFS-AGIKVRF 808 (5019)
T ss_pred hcccchhhhhhhcCCCceEEEECCccchhHHhcC-CCcceeeeeEeec-cCeEEEE
Confidence 2246899999999999999999998655556642 2457789999864 4455544
No 47
>KOG2177|consensus
Probab=95.09 E-value=0.12 Score=44.47 Aligned_cols=145 Identities=23% Similarity=0.307 Sum_probs=82.8
Q ss_pred eeEeCCCCC----CCEEEecCCCceEEe---------CCCCCCCcceEEecccccCceEEE-EEEEeccccCceEEEEEE
Q psy17782 38 WTWDRNDKS----PDTKLFGKNHRTVNF---------HPTWSKGAAGIRGTRQLNNGRYYW-ELATSQRLFGTSMMFGIG 103 (256)
Q Consensus 38 ~~ld~~~~~----~~l~ls~d~~~~v~~---------~p~r~~~~~~V~g~~~~~sG~hYW-EV~v~~~~~~~~~~vGv~ 103 (256)
.++++..++ ..+.++++ .+.+.. .+.++.....+++...+.+|+||| ||.+.... ...|.+|++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 284 (386)
T KOG2177|consen 207 VTLDPDTANRQLEEFLLLSED-LRSVRSGALRQLEPDSPERFRLLPCVLGSQVFTSGRHYWEEVEVGLKG-KEEWDLGVC 284 (386)
T ss_pred eecCccccccccccceeeccc-cceeecCCcCCCCCCCCCceeEEeEecccCccCccccceeEEeccCcc-Ccchhhhhh
Confidence 466666666 66777766 666654 234555566666678899999999 77776643 246888888
Q ss_pred eccccccccccccccCCCCceeEEEeCcEEEeCCeeeecCCCCCCCCCCEEEEEEeCCCCE--EEEEEcCeeeeeeeecc
Q psy17782 104 TRKARIHQNAFINLIGKDEHSWGLSHKGLIFHGGKFYNYTKPFPENEATRIGVLFDGIAGT--LSFYKDGEYLGIAFQGL 181 (256)
Q Consensus 104 ~~~~~~~~~~~~~~lG~~~~sw~~~~~g~~~h~~~~~~~~~~~~~~~~~~IGv~LD~~~G~--lsFy~~g~~lg~af~~~ 181 (256)
.+..... ...+......|...... ............ .....+. +|++.+. .+|++ ..+...+..
T Consensus 285 ~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~-l~~e~~~~~~~~~~--~~~~~~~~~- 350 (386)
T KOG2177|consen 285 LESARKL----LEPLSPESGFWLLGLLK-SQSGKKYAASTP-----PLTQLVL-LDYEAGSLSISFYN--GSLIYTFPK- 350 (386)
T ss_pred hhccccc----cccccCcCceEEEeeec-CCCCcceEEecC-----Ccccccc-cccccceeEEEEeC--Cceeeeccc-
Confidence 8762221 12344555677765321 000001111111 1111111 9999994 45554 234445543
Q ss_pred ccCCCceEEEEeecCCc
Q psy17782 182 QHVQEPLYPMICSTAVK 198 (256)
Q Consensus 182 ~~f~~~lyP~~~~~~~~ 198 (256)
..|.+++.|.++.....
T Consensus 351 ~~~~~~~~~~~~~~~~~ 367 (386)
T KOG2177|consen 351 DSFSEPLRPVFSPGTSG 367 (386)
T ss_pred cccCCCcCceeecCccc
Confidence 44788999999875543
No 48
>smart00588 NEUZ domain in neuralized proteins.
Probab=92.81 E-value=2.1 Score=32.68 Aligned_cols=65 Identities=15% Similarity=0.215 Sum_probs=46.8
Q ss_pred eeEeCCCCCCCEEEecCCCceEEeCCCCCCCcceEEecccccCceEEEEEEEec--cccCceEEEEEEecc
Q psy17782 38 WTWDRNDKSPDTKLFGKNHRTVNFHPTWSKGAAGIRGTRQLNNGRYYWELATSQ--RLFGTSMMFGIGTRK 106 (256)
Q Consensus 38 ~~ld~~~~~~~l~ls~d~~~~v~~~p~r~~~~~~V~g~~~~~sG~hYWEV~v~~--~~~~~~~~vGv~~~~ 106 (256)
+.|. .....++.|+.| ++++++....|. .+-|+.+.++..|.- |+|++.+ ..++...++|++..+
T Consensus 3 l~FH-~~~G~ni~l~~~-~~~A~R~~~~f~-~givFS~rPl~~~E~-~~v~i~~~~~~w~G~l~~G~Ts~d 69 (123)
T smart00588 3 LRFH-HRHGSNIRLSDS-GRVARRSASDFC-NALVFSARPLRINEL-FEVKIEKVVRKWSGALRFGVTTCD 69 (123)
T ss_pred cccc-cccCCCeEECCC-CcEEEcccCCcC-ceEEecCCCCcCCCE-EEEEEEEecCCccCceEEEEecCC
Confidence 5666 566889999998 899988544353 457899999987663 3666654 345568999999863
No 49
>PF01847 VHL: von Hippel-Lindau disease tumour suppressor protein; InterPro: IPR022772 Von Hippel-Lindau disease tumor suppressor (VHL) has two domains: a roughly 100-residue N-terminal domain rich in beta sheet (beta domain) and a smaller alpha-helical domain (alpha domain), held together by two linkers and a polar interface. A large portion of the alpha domain surface, and a small portion of the beta domain, interact with ElonginC. About half of the tumorigenic mutations map to the alpha domain and its residues that contact ElonginC. The remaining mutations map to the beta domain, and significantly, to a beta domain surface patch uninvolved in ElonginC binding. This suggests that two intact macromolecular binding sites may be required for the tumor suppressor effects of VHL []. This entry represents both beta and alpha domains of VHL.; PDB: 3ZRF_L 3ZRC_C 1LM8_V 1LQB_C 1VCB_F.
Probab=88.34 E-value=1 Score=35.80 Aligned_cols=57 Identities=16% Similarity=0.398 Sum_probs=34.5
Q ss_pred CceEEEEeecCCceeEEEeeecccccchhHHHHHHHHhccCcCCcCcCCCChhHHHHHHH
Q psy17782 186 EPLYPMICSTAVKTQISLEVARRDFINLQDRCRSIIIKTMNQADLDLVKLPTPIRTYIEE 245 (256)
Q Consensus 186 ~~lyP~~~~~~~~~~v~l~~~~~~~~sLq~lcr~~Ir~~~~~~~i~~l~LP~~l~~~l~~ 245 (256)
+-++|..........+.|..+ ..+|++.|-.+||..+.++.+.+|.||..|+.=|..
T Consensus 77 evF~P~~~~~~~pi~v~ItlP---v~sLke~cL~vIr~L~~~~~~~~LeIpr~L~~dL~~ 133 (156)
T PF01847_consen 77 EVFFPSPNVDGQPIFVNITLP---VYSLKERCLQVIRSLVRPEDYRRLEIPRSLQEDLED 133 (156)
T ss_dssp SCB----SSSSSSEEEEEE--------HHHHHHHHHHTTS-GGGGGGSSS-HHHHHHHHS
T ss_pred EEEeecCCCCCCeEEEEEEee---hHHHHHHHHHHHHHHcCHhhhhhcCccHHHHHHHHh
Confidence 345676554322223333322 679999999999999988899999999999998865
No 50
>PHA02956 hypothetical protein; Provisional
Probab=76.63 E-value=2 Score=33.21 Aligned_cols=33 Identities=30% Similarity=0.482 Sum_probs=29.5
Q ss_pred ccchhHHHHHHHHhccCcCCcCcCCCChhHHHH
Q psy17782 210 FINLQDRCRSIIIKTMNQADLDLVKLPTPIRTY 242 (256)
Q Consensus 210 ~~sLq~lcr~~Ir~~~~~~~i~~l~LP~~l~~~ 242 (256)
...|+++|-.-|++++.++.-++|.||..|-.-
T Consensus 154 vq~lkdicik~i~~tv~kd~~dkl~lp~sll~e 186 (189)
T PHA02956 154 VQKLKDICIKMINKTVKKDDCDKLELPRSLLKE 186 (189)
T ss_pred cccHHHHHHHHHHhhhchhhhhhhcCcHHHHHH
Confidence 567999999999999999999999999987543
No 51
>KOG1477|consensus
Probab=67.78 E-value=5.7 Score=37.45 Aligned_cols=70 Identities=20% Similarity=0.196 Sum_probs=50.8
Q ss_pred eecCCCCCCCCCCEEEEEEeCCCCEEEEEEcCeeeeeeeeccccCCCceEEEEeecCCceeEEEee-ecccccchh
Q psy17782 140 YNYTKPFPENEATRIGVLFDGIAGTLSFYKDGEYLGIAFQGLQHVQEPLYPMICSTAVKTQISLEV-ARRDFINLQ 214 (256)
Q Consensus 140 ~~~~~~~~~~~~~~IGv~LD~~~G~lsFy~~g~~lg~af~~~~~f~~~lyP~~~~~~~~~~v~l~~-~~~~~~sLq 214 (256)
..++..+. .+++||+.+|.-.+.-.|.+++..++.+|.... --++|-+.+...+..+..+. ..++-..+.
T Consensus 18 ~~~g~~~~--~~d~i~~~~~~~~~~~~~~~~~~~~gi~f~~~~---~~~~~dvg~~~~~~~~~~N~~~~~Fe~~i~ 88 (469)
T KOG1477|consen 18 QLYGPVFT--TGDVIPCEVNTINGSDFFTKNGPDMGIAFYTPP---ALLYHDVGVVQAGEPLPANFGIYYFEFDIL 88 (469)
T ss_pred cccCCcCC--ccccccceEeccCCceeEEEEcCCcceeeecCc---cccCCCcceeeCCCCCCcccccceeeeeHH
Confidence 34555443 689999999999999999999999999997533 23788888877777666652 223444444
No 52
>PF15409 PH_8: Pleckstrin homology domain
Probab=64.22 E-value=19 Score=25.86 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=17.2
Q ss_pred EEEEEEeCCCCEEEEEEcCeee
Q psy17782 153 RIGVLFDGIAGTLSFYKDGEYL 174 (256)
Q Consensus 153 ~IGv~LD~~~G~lsFy~~g~~l 174 (256)
+==..||++.|+|+||.+.+..
T Consensus 16 kRyFvL~~~~G~LsYy~~~~~~ 37 (89)
T PF15409_consen 16 KRYFVLDFEKGTLSYYRNQNSG 37 (89)
T ss_pred eEEEEEEcCCcEEEEEecCCCC
Confidence 4445699999999999986543
No 53
>KOG4625|consensus
Probab=57.05 E-value=51 Score=31.72 Aligned_cols=125 Identities=14% Similarity=0.149 Sum_probs=66.5
Q ss_pred CCCEEEecCCCceEEeCCCCCCCcceEEecccccCceEEEEEEEec--cccCceEEEEEEeccccccccc---ccc-ccC
Q psy17782 46 SPDTKLFGKNHRTVNFHPTWSKGAAGIRGTRQLNNGRYYWELATSQ--RLFGTSMMFGIGTRKARIHQNA---FIN-LIG 119 (256)
Q Consensus 46 ~~~l~ls~d~~~~v~~~p~r~~~~~~V~g~~~~~sG~hYWEV~v~~--~~~~~~~~vGv~~~~~~~~~~~---~~~-~lG 119 (256)
..++.|+.+ ++.+++..+ |. .+-++.++++..|.- |+|++.+ ..|++++++||+...-..-... +.+ -+-
T Consensus 109 GsNi~I~~~-g~~A~RraS-F~-dAItFSnRPl~~~E~-f~v~ieki~~~WSG~irlGvT~~dPe~i~~~~~tfa~PDL~ 184 (595)
T KOG4625|consen 109 GSNIRIDNS-GTLAKRRAS-FC-DAITFSNRPLRIGEL-FLVEIEKIERGWSGHLRLGVTSLDPEDIRPSPETFACPDLV 184 (595)
T ss_pred CcceEECCC-cceeehhhh-hc-ceeeeccCcCCCCcE-EEEEEEEeccCccceeEeecccCCHhhccCCCccccCcchh
Confidence 578999998 888887322 42 356788888876653 4565554 4567799999997542221100 000 011
Q ss_pred CCCceeEEEeCcEEEeCCeeeecCCCCCCCCCCEEEEEEeCCCCEEEEEEcCeeeeeeee
Q psy17782 120 KDEHSWGLSHKGLIFHGGKFYNYTKPFPENEATRIGVLFDGIAGTLSFYKDGEYLGIAFQ 179 (256)
Q Consensus 120 ~~~~sw~~~~~g~~~h~~~~~~~~~~~~~~~~~~IGv~LD~~~G~lsFy~~g~~lg~af~ 179 (256)
.-.++|.+........++.- ..|......+|+..++-+ +.+.|+.+++..+++-+
T Consensus 185 nl~G~Wa~al~e~~~n~~~i----~~~~v~~~g~v~~~in~~-~~~~fftgi~~~~~a~~ 239 (595)
T KOG4625|consen 185 NLSGFWAKALPETYRNEGNI----LAFAVNPKGRVFYGINGS-GKMHFFTGIRTQGHACS 239 (595)
T ss_pred ccCchhhhhcchhhcccccc----hhhhhcCCCcceeeecCc-ceEEEeecccccchhhc
Confidence 12345555431111111110 112223456788888765 55566666655555443
No 54
>PF11393 IcmL: Macrophage killing protein with similarity to conjugation protein; InterPro: IPR021055 IcmL contains two amphipathic beta-sheet regions, required for the pore-forming ability which may be related to the transfer of this protein into a host cell membrane []. The icmL gene shows significant similarity to plasmid genes involved in conjugation however IcmL is thought to be required for macrophage killing. It is unknown whether conjugation plays a role in macrophage killing [].
Probab=50.93 E-value=15 Score=27.27 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=17.0
Q ss_pred ceEEecccccCceEEEEEEEe
Q psy17782 70 AGIRGTRQLNNGRYYWELATS 90 (256)
Q Consensus 70 ~~V~g~~~~~sG~hYWEV~v~ 90 (256)
++++-.++...|+++|+|++.
T Consensus 85 ~~vi~~~g~~~G~~~W~vq~P 105 (108)
T PF11393_consen 85 APVIVEEGVNNGVYAWKVQVP 105 (108)
T ss_pred CcEEEEEeccCCeEEEEEEec
Confidence 466777777799999999874
No 55
>KOG2242|consensus
Probab=47.73 E-value=2.9 Score=40.28 Aligned_cols=126 Identities=21% Similarity=0.280 Sum_probs=78.5
Q ss_pred ccCCCCceeEEEeCcEEEeCCeeeecCCCCCCCCCCEEEEEEeCC---CCEEEEEEcCeeeeeeeeccccC--CCceEEE
Q psy17782 117 LIGKDEHSWGLSHKGLIFHGGKFYNYTKPFPENEATRIGVLFDGI---AGTLSFYKDGEYLGIAFQGLQHV--QEPLYPM 191 (256)
Q Consensus 117 ~lG~~~~sw~~~~~g~~~h~~~~~~~~~~~~~~~~~~IGv~LD~~---~G~lsFy~~g~~lg~af~~~~~f--~~~lyP~ 191 (256)
.++.+..++.+...+..--+...+.+...|. ..+.|||++|.+ .-.|+|-++++.++.+|...... .+.++|+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~f~--e~~~i~c~~~~~~~d~~~l~~~k~~~~~~~~~~l~~~~~~~~~~~p~ 197 (558)
T KOG2242|consen 120 LLGDEPFSYGYSETGKKSCNSEVEKYGEKFP--ENDVIGCFADFEILDEVELSYEKNGQDLGESFLLSKEDLGGQALYPH 197 (558)
T ss_pred ccccccccccccccccchhhHHHHHHHhhcc--cccccchhhcccccccCcchhhhccchhhhhhcchhhhccCcccCcc
Confidence 4666666666554432222333345665554 568999998764 56899999999888888743221 3469999
Q ss_pred EeecCCceeEEEeee--ccc-----ccchhHHHHH-HHHhccCc------CCcCcCCCChhHHHHHH
Q psy17782 192 ICSTAVKTQISLEVA--RRD-----FINLQDRCRS-IIIKTMNQ------ADLDLVKLPTPIRTYIE 244 (256)
Q Consensus 192 ~~~~~~~~~v~l~~~--~~~-----~~sLq~lcr~-~Ir~~~~~------~~i~~l~LP~~l~~~l~ 244 (256)
+..+.+..+..+.+. ..+ ..-++.+|.. +++...++ ...++..||...+.-+.
T Consensus 198 vl~~~~~ve~~f~~~~ag~~~v~~~~~~i~~~~~~~~~~~~~~p~~~~~c~~~~~~g~~~~g~~~~~ 264 (558)
T KOG2242|consen 198 VLRKNCAVEGNFGQKAAGYEPVKEEYTFIQNYPLEERLRGPVGPETKKECEVFMMRGLPGAGKTSWA 264 (558)
T ss_pred cccCcceeccccccccccccccchhhhhhhhcchhhcccCCCCccccccchhhhcccccccccchhh
Confidence 998777666677652 122 2335555443 33333333 56788889988887663
No 56
>PHA02698 hypothetical protein; Provisional
Probab=42.40 E-value=9.8 Score=26.23 Aligned_cols=22 Identities=50% Similarity=0.786 Sum_probs=16.0
Q ss_pred CCcccccceeeecCCCCCCCCC
Q psy17782 1 MDDHQVNGVLLAFPSPTPLGLE 22 (256)
Q Consensus 1 ~~~~~~~~~~~~~~~~~p~~~~ 22 (256)
|||-|+|+.....|.|.|+..+
T Consensus 18 lddvqvnGDlmPtp~p~peeV~ 39 (89)
T PHA02698 18 LDDVQVNGDLMPTPEPTPEEVP 39 (89)
T ss_pred HhccccCCcccCCCCCChhhhc
Confidence 6899999988766666664433
No 57
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=32.66 E-value=95 Score=17.56 Aligned_cols=26 Identities=23% Similarity=0.120 Sum_probs=19.6
Q ss_pred CEEEEEEeCCCCEEEEEEcCeeeeee
Q psy17782 152 TRIGVLFDGIAGTLSFYKDGEYLGIA 177 (256)
Q Consensus 152 ~~IGv~LD~~~G~lsFy~~g~~lg~a 177 (256)
..-|+.+|+..+.|.|.+.....+..
T Consensus 10 ~~~~la~d~~~~~lYw~D~~~~~I~~ 35 (43)
T smart00135 10 HPNGLAVDWIEGRLYWTDWGLDVIEV 35 (43)
T ss_pred CcCEEEEeecCCEEEEEeCCCCEEEE
Confidence 34578999999999999987644433
No 58
>PF08893 DUF1839: Domain of unknown function (DUF1839); InterPro: IPR014989 This group of proteins are functionally uncharacterised.
Probab=32.32 E-value=91 Score=27.76 Aligned_cols=71 Identities=18% Similarity=0.323 Sum_probs=39.3
Q ss_pred CCEEEE-EEeCCCCEEEEEEcCee-------eeeeeeccccC---CCceEEEEeecCCceeEEEeeecccccchhHHHHH
Q psy17782 151 ATRIGV-LFDGIAGTLSFYKDGEY-------LGIAFQGLQHV---QEPLYPMICSTAVKTQISLEVARRDFINLQDRCRS 219 (256)
Q Consensus 151 ~~~IGv-~LD~~~G~lsFy~~g~~-------lg~af~~~~~f---~~~lyP~~~~~~~~~~v~l~~~~~~~~sLq~lcr~ 219 (256)
-.+||| .||.++++|.|+.|.-. .--.|...... ..+|+|++-. ++.......-..|.+.+..
T Consensus 122 KTTI~id~iD~~ar~l~YfHn~Gy~~l~GeDy~glf~~~~~~~~~~~~l~PYvE~------vk~~~~~~~~~~l~~~s~~ 195 (319)
T PF08893_consen 122 KTTIGIDRIDPEARRLGYFHNSGYHRLEGEDYDGLFRLDPPLSEWGAPLFPYVEF------VKRRRPPLDEAALREASLE 195 (319)
T ss_pred CceeeeeeeecccceEeeecCCceeecccCCcccccccCcccccCCCCCCCceeE------eecCCCCCchHHHHHHHHH
Confidence 368888 89999999999998532 11223321111 1267887764 3333322223344444555
Q ss_pred HHHhccCc
Q psy17782 220 IIIKTMNQ 227 (256)
Q Consensus 220 ~Ir~~~~~ 227 (256)
.+|.++.+
T Consensus 196 llr~Hl~R 203 (319)
T PF08893_consen 196 LLRRHLRR 203 (319)
T ss_pred HHHHHHhh
Confidence 56666544
No 59
>COG0139 HisI Phosphoribosyl-AMP cyclohydrolase [Amino acid transport and metabolism]
Probab=29.19 E-value=1.4e+02 Score=22.37 Aligned_cols=62 Identities=11% Similarity=0.171 Sum_probs=38.8
Q ss_pred CceEEEEEEeccccccccccccccCCCCceeEEEe-CcEEEeCCeeeecCCCCCCCCCCEEEEEEeCCCCEEEEEEc
Q psy17782 95 GTSMMFGIGTRKARIHQNAFINLIGKDEHSWGLSH-KGLIFHGGKFYNYTKPFPENEATRIGVLFDGIAGTLSFYKD 170 (256)
Q Consensus 95 ~~~~~vGv~~~~~~~~~~~~~~~lG~~~~sw~~~~-~g~~~h~~~~~~~~~~~~~~~~~~IGv~LD~~~G~lsFy~~ 170 (256)
+...++|+..+.+-.+. + .....|-|+. ++.+|+.|... | ..-.++.+.+|||.-+|-|-..
T Consensus 29 ~eVLMlaymN~eAl~kT------l-eTg~~~y~SRSR~~lW~KGetS--G-----~~q~v~~i~~DCD~Dall~~V~ 91 (111)
T COG0139 29 GEVLMLAYMNEEALAKT------L-ETGEAHYYSRSRQELWTKGETS--G-----HTQKVVEIRLDCDGDALLLLVE 91 (111)
T ss_pred CcEEEEEecCHHHHHHH------H-hcCeEEEEEcchhhhecccccc--C-----ceEEEEEEEcCCCCCEEEEEEE
Confidence 34567777765543321 1 2334566664 34789988643 2 1336899999999999977664
No 60
>PF10665 Minor_capsid_1: Minor capsid protein; InterPro: IPR019612 This entry is represented by Bacteriophage A118, Gp9. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a putative tail-knob protein from Listeria phage A118.
Probab=25.57 E-value=1.6e+02 Score=22.10 Aligned_cols=14 Identities=14% Similarity=0.214 Sum_probs=8.7
Q ss_pred ccccCceEEEEEEE
Q psy17782 76 RQLNNGRYYWELAT 89 (256)
Q Consensus 76 ~~~~sG~hYWEV~v 89 (256)
.+|+..-|.|||+|
T Consensus 100 ~~~~n~v~~yEveV 113 (114)
T PF10665_consen 100 EPFSNKVHHYEVEV 113 (114)
T ss_pred cCCCCCcEEEEEEE
Confidence 34444558888876
No 61
>PRK00051 hisI phosphoribosyl-AMP cyclohydrolase; Reviewed
Probab=23.97 E-value=2.1e+02 Score=21.88 Aligned_cols=62 Identities=11% Similarity=0.101 Sum_probs=39.4
Q ss_pred CceEEEEEEeccccccccccccccCCCCceeEEEe-CcEEEeCCeeeecCCCCCCCCCCEEEEEEeCCCCEEEEEEc
Q psy17782 95 GTSMMFGIGTRKARIHQNAFINLIGKDEHSWGLSH-KGLIFHGGKFYNYTKPFPENEATRIGVLFDGIAGTLSFYKD 170 (256)
Q Consensus 95 ~~~~~vGv~~~~~~~~~~~~~~~lG~~~~sw~~~~-~g~~~h~~~~~~~~~~~~~~~~~~IGv~LD~~~G~lsFy~~ 170 (256)
|...++|+..+.+-.+. + .....|-++. ++.+|+.+... + ..-.++.+++||+.-.|-|...
T Consensus 25 g~VLMlaymn~eAl~~T------l-~tg~~~y~SRSR~~lW~KGetS--G-----~~q~v~~i~~DCD~D~Ll~~V~ 87 (125)
T PRK00051 25 GEVLMVAWMNEEALAKT------L-ETGRAHYWSRSRQKLWRKGETS--G-----HVQKVHEVRLDCDGDAVLLKVE 87 (125)
T ss_pred CCEEEEEEcCHHHHHHH------H-hcCcEEEEeCccCcccCCCCCc--C-----CeEEEEEEEecCCCCEEEEEEE
Confidence 45678888876543321 1 2334455554 44789888642 2 1236889999999999988664
No 62
>COG5513 Predicted secreted protein [Function unknown]
Probab=20.75 E-value=3.7e+02 Score=20.13 Aligned_cols=15 Identities=20% Similarity=0.408 Sum_probs=12.7
Q ss_pred cCceEEEEEEEeccc
Q psy17782 79 NNGRYYWELATSQRL 93 (256)
Q Consensus 79 ~sG~hYWEV~v~~~~ 93 (256)
++|.|-||+++.+.+
T Consensus 70 ~~G~~~W~i~av~~G 84 (113)
T COG5513 70 SPGIHTWEIRAVKQG 84 (113)
T ss_pred CCceEEEEEEeecCC
Confidence 369999999999874
Done!