RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17782
(256 letters)
>gnl|CDD|240456 cd12876, SPRY_SOCS3, SPRY domain in the suppressor of cytokine
signaling 3 (SOCS3) family. The SPRY domain-containing
SOCS box protein family (SPSB1-4, also known as SSB-1 to
-4) is composed of a central SPRY protein interaction
domain and a C-terminal SOCS box. All four SPSB proteins
interact with c-Met, the hepatocyte growth factor
receptor, but SOCS3 regulates cellular response to a
variety of cytokines such as leukemia inhibitory factor
(LIF) and interleukin 6. SOCS3, along with SOCS1, are
expressed by immune cells and cells of the central
nervous system (CNS) and have the potential to impact
immune processes within the CNS. In non-small cell lung
cancer (NSCLC), SOCS3 is silenced and proline-rich
tyrosine kinase 2 (Pyk2) is over-expressed; it has been
suggested that SOCS3 could be an effective way to
prevent the progression of NSCLC due to its role in
regulating Pyk2 expression.
Length = 187
Score = 269 bits (690), Expect = 3e-92
Identities = 87/188 (46%), Positives = 124/188 (65%), Gaps = 5/188 (2%)
Query: 38 WTWDRNDKSPDTKLFGKNHRTVNFHPTWSKGAAGIRGTRQL-NNGRYYWELATSQRLFGT 96
W WD +DKSP + +++R V FHP +S G A +RG++ L G++YWE+ ++GT
Sbjct: 2 WVWDEDDKSPSV-VLSEDNREVYFHPDYSCGTAAVRGSKPLTEGGQHYWEIKMLSPVYGT 60
Query: 97 SMMFGIGTRKARIHQNA--FINLIGKDEHSWGLSHKGLIFHGGKFYNYTKPFPENEATRI 154
SMM GIGT A +H F +L+G DE SWGLS+KGL++H G+ YT+ F N+ T I
Sbjct: 61 SMMVGIGTDDADLHAYRYEFCSLLGLDEESWGLSYKGLLWHNGESRPYTEKFG-NQGTII 119
Query: 155 GVLFDGIAGTLSFYKDGEYLGIAFQGLQHVQEPLYPMICSTAVKTQISLEVARRDFINLQ 214
GV D +GTL+FYK+G+ LG+AF GLQ+ + LYPM+ STA K+++ L AR ++LQ
Sbjct: 120 GVHLDMWSGTLTFYKNGKPLGVAFTGLQNDGKKLYPMVSSTAAKSEMKLINARSFPVSLQ 179
Query: 215 DRCRSIII 222
RC + I
Sbjct: 180 YRCCAAIR 187
>gnl|CDD|240455 cd12875, SPRY_SOCS_Fbox, SPRY domain in Fbxo45 and suppressors of
cytokine signaling (SOCS) proteins. This family
consists of the SPRY domain-containing SOCS box protein
family (SPSB1-4, also known as SSB-1 to -4) as well as
F-box protein 45 (Fbxo45), a novel synaptic E3 and
ubiquitin ligase. The SPSB protein is composed of a
central SPRY protein interaction domain and a C-terminal
SOCS box. SPSB1, SPSB2, and SPSB4 interact with prostate
apoptosis response protein 4 (Par-4) and are negative
regulators that recruit the ECS E3 ubiquitin ligase
complex to polyubiquitinate inducible nitric-oxide
synthase (iNOS), resulting in its proteasomal
degradation. Fbxo45 is related to this family; it is
located N-terminal to the SPRY domain, and known to
induce the degradation of a synaptic vesicle-priming
factor, Munc13-1, via the SPRY domain, thus playing an
important role in the regulation of neurotransmission by
modulating Munc13-1 at the synapse. Suppressor of
cytokine signaling (SOCS) proteins negatively regulate
signaling from JAK-associated cytokine receptor
complexes, and play key roles in the regulation of
immune homeostasis.
Length = 171
Score = 94.0 bits (234), Expect = 8e-24
Identities = 49/171 (28%), Positives = 82/171 (47%), Gaps = 12/171 (7%)
Query: 40 WDRNDKSPDTKLFGKNHRTVNFHPTWSKGAAGIRGTRQLNNGRYYWELATSQRLFGTSMM 99
W+ D S + + ++ T + P ++ IRG + G + WE+ R G+ +
Sbjct: 3 WNPADCSKNIYI-KEDGLTFHRRPV-AQSTDAIRGKIGYSRGLHAWEVKWEGRQRGSHAV 60
Query: 100 FGIGTRKARIHQNAFINLIGKDEHSWG--LSHKGLIFHGGKFYNYTKPFPENEAT----- 152
G+ T+ A + + ++ L+G D SWG LS L +H GK + P
Sbjct: 61 VGVATKDAPLQCDGYVALLGSDSESWGWDLSTNKL-YHDGKVVIGSYPAGSATENYSVPD 119
Query: 153 RIGVLFDGIAGTLSFYKDGEYLGIAFQGLQHVQEPLYPMICSTAVKTQISL 203
R+ V+ D GTL+F +GEYLG+AF+GL + LYP + + +I +
Sbjct: 120 RVLVILDMEDGTLAFEANGEYLGVAFRGL--PGKLLYPAVSAVYGNCEIRI 168
>gnl|CDD|240486 cd12906, SPRY_SOCS1-2-4, SPRY domain in the suppressor of cytokine
signaling 1, 2, 4 families (SOCS1, SOCS2, SOCS4). The
SPRY domain-containing SOCS box protein family (SPSB1-4,
also known as SSB-1 to -4) is composed of a central SPRY
protein interaction domain and a C-terminal SOCS box.
All four SPSB proteins interact with c-Met, the
hepatocyte growth factor receptor, but only SPSB1,
SPSB2, and SPSB4 interact with prostate apoptosis
response protein 4 (Par-4). They are negative regulators
that recruit the ECS E3 ubiquitin ligase complex to
polyubiquitinate inducible nitric-oxide synthase (iNOS),
resulting in its proteasomal degradation, thus
contributing to protection against the cytotoxic effect
of iNOS in activated macrophages. It has been shown that
SPSB1 and SPSB4 induce the degradation of iNOS more
strongly than SPSB2. The Drosophila melanogaster SPSB1
homolog, GUSTAVUS, interacts with the DEAD box RNA
helicase Vasa. Suppressor of cytokine signaling (SOCS)
proteins negatively regulate signaling from
JAK-associated cytokine receptor complexes, and play key
roles in the regulation of immune homeostasis.
Length = 174
Score = 83.9 bits (208), Expect = 6e-20
Identities = 51/167 (30%), Positives = 82/167 (49%), Gaps = 19/167 (11%)
Query: 38 WTWDRNDKSPDTKLFGKNHRTVNFHPTWSKGAAGIRGTRQLNNGRYYWELATSQRLFGTS 97
W+ D+S + + + T + HP ++ GIRG + G + WE+ R GT
Sbjct: 1 HAWNPEDRSLNIFVKEDDPLTFHRHPV-AQSTDGIRGKVGYSRGLHVWEINWPTRQRGTH 59
Query: 98 MMFGIGTRKARIHQNAFINLIGKDEHSWG-------LSHKGLIFHGGKFYNYTKP----- 145
+ G+ T +A +H + +L+G +E SWG L H G + + KP
Sbjct: 60 AVVGVATAEAPLHCVGYQSLVGSNEESWGWDLGRNKLYHDSKNNPGVTYPAFLKPDENFV 119
Query: 146 FPENEATRIGVLFDGIAGTLSFYKDGEYLGIAFQGLQHVQEPLYPMI 192
P+ + V+ D GTLSF DG+YLG+AF+GL+ + LYP++
Sbjct: 120 VPD----KFLVVLDMDEGTLSFVVDGQYLGVAFRGLK--GKTLYPIV 160
>gnl|CDD|240451 cd11709, SPRY, SPRY domain. SPRY domains, first identified in the
SP1A kinase of Dictyostelium and rabbit Ryanodine
receptor (hence the name), are homologous to B30.2. SPRY
domains have been identified in at least 11 protein
families, covering a wide range of functions, including
regulation of cytokine signaling (SOCS), RNA metabolism
(DDX1 and hnRNP), immunity to retroviruses (TRIM5alpha),
intracellular calcium release (ryanodine receptors or
RyR) and regulatory and developmental processes (HERC1
and Ash2L). B30.2 also contains residues in the
N-terminus that form a distinct PRY domain structure;
i.e. B30.2 domain consists of PRY and SPRY subdomains.
B30.2 domains comprise the C-terminus of three protein
families: BTNs (receptor glycoproteins of immunoglobulin
superfamily); several TRIM proteins (composed of
RING/B-box/coiled-coil or RBCC core); Stonutoxin
(secreted poisonous protein of the stonefish Synanceia
horrida). While SPRY domains are evolutionarily ancient,
B30.2 domains are a more recent adaptation where the
SPRY/PRY combination is a possible component of immune
defense. Mutations found in the SPRY-containing proteins
have shown to cause Mediterranean fever and Opitz
syndrome.
Length = 118
Score = 78.2 bits (193), Expect = 2e-18
Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 7/114 (6%)
Query: 81 GRYYWELATSQRLFGTSMMFGIGTRKARIHQNAFINLIGKDEHSWGLS-HKGLIFHGGKF 139
G++Y+E+ G + G T+ + +G DE SWG + HGG
Sbjct: 1 GKWYYEVRVDSGNGGL-IQVGWATKSFSLDGE---RGVGDDEGSWGFDGSRLRKGHGGSS 56
Query: 140 YNYTKPFPENEATRIGVLFDGIAGTLSFYKDGEYLGIAFQGLQHVQEPLYPMIC 193
+P+ + +G L D AGTLSF +G LG+AF+ L PLYP +
Sbjct: 57 EPGGRPWKSGD--VVGCLLDLDAGTLSFSLNGVDLGVAFENLFRKGGPLYPAVS 108
>gnl|CDD|216029 pfam00622, SPRY, SPRY domain. SPRY Domain is named from SPla and
the RYanodine Receptor. Domain of unknown function.
Distant homologues are domains in
butyrophilin/marenostrin/pyrin homologues.
Length = 125
Score = 73.9 bits (182), Expect = 9e-17
Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 9/127 (7%)
Query: 80 NGRYYWELATSQRLFGTSMMFGIGTRKARIHQNAFINLIGKDEHSWGL-SHKGLIFHGGK 138
+G++Y+E+ G + G T+ + L+G DE SWG G +H G+
Sbjct: 1 SGKHYFEVEVDTGG-GGHVRVGWATKSVKKP---GFRLLGDDEGSWGYDGSGGSKYHNGE 56
Query: 139 FYNYTKPFPENEATRIGVLFDGIAGTLSFYKDGEYLGI-AFQGLQHVQEPLYPMICSTAV 197
Y F E IG D G +SF K+G+ LG F+ ++ PLYP + +
Sbjct: 57 SEPYGLKFQEG--DVIGCFLDLEEGEISFTKNGKDLGGYTFRNVEF-GGPLYPAVSLGST 113
Query: 198 KTQISLE 204
+
Sbjct: 114 GEAVQFN 120
>gnl|CDD|214669 smart00449, SPRY, Domain in SPla and the RYanodine Receptor.
Domain of unknown function. Distant homologues are
domains in butyrophilin/marenostrin/pyrin homologues.
Length = 122
Score = 72.3 bits (178), Expect = 3e-16
Identities = 37/116 (31%), Positives = 53/116 (45%), Gaps = 10/116 (8%)
Query: 80 NGRYYWELATSQRLFGTSMMFGIGTRKARIHQNAFINLIGKDEHSWGL-SHKGLIFHGGK 138
+GR+Y+E+ G G+ T+ + L+G+D+ SWG G +H
Sbjct: 1 SGRHYFEVEIGD---GGHWRVGVATKSVPRG---YFALLGEDKGSWGYDGDGGKKYHNST 54
Query: 139 FYNYTKPFPENEATRIGVLFDGIAGTLSFYKDGEYLGI-AFQGLQHVQEPLYPMIC 193
Y P E IG D AGT+SFYK+G+YL AF ++ PLYP
Sbjct: 55 GPEYGLPLQE-PGDVIGCFLDLEAGTISFYKNGKYLHGLAFFDVK-FSGPLYPAFS 108
>gnl|CDD|240487 cd12907, SPRY_Fbox, SPRY domain in the F-box family Fbxo45. Fbxo45
is a novel synaptic E3 and ubiquitin ligase, related to
the suppressor of cytokine signaling (SOCS) proteins and
located N-terminal to a SPRY (SPla and the ryanodine
receptor) domain. Fbxo45 induces the degradation of a
synaptic vesicle-priming factor, Munc13-1, via the SPRY
domain, thus playing an important role in the regulation
of neurotransmission by modulating Munc13-1 at the
synapse. F-box motifs are found in proteins that
function as the substrate recognition component of SCF
E3 complexes.
Length = 175
Score = 74.1 bits (182), Expect = 3e-16
Identities = 52/169 (30%), Positives = 90/169 (53%), Gaps = 10/169 (5%)
Query: 40 WDRNDKSPDTKLFGKNHRTVNFHPTWSKGAAGIRGTRQLNNGRYYWELATSQRLFGTSMM 99
W+ ND S + + N T++ +P ++ G RG ++GR+ WE+ L GT +
Sbjct: 3 WNPNDCSRNVYI-KPNGFTLHRNPV-AQSTDGARGKIGFSSGRHAWEVWWEGPL-GTVAV 59
Query: 100 FGIGTRKARIHQNAFINLIGKDEHSWG--LSHKGLIFHGGKFYNYTK--PFPENE-ATRI 154
GI T++A + + ++ L+G D+ SWG L L+ +G NY + P+ + RI
Sbjct: 60 VGIATKEAPLQCHGYVALLGSDDQSWGWNLVDNHLLHNGDVQGNYPQCNNAPKYQVGERI 119
Query: 155 GVLFDGIAGTLSFYKDGEYLGIAFQGLQHVQEPLYPMICSTAVKTQISL 203
V+ D TL+F + E+LG+AF+GL V LYP + + T++++
Sbjct: 120 RVILDMEDNTLAFERGYEFLGVAFRGLPKVC--LYPAVSAVYGNTEVTM 166
>gnl|CDD|240453 cd12873, SPRY_DDX1, SPRY domain associated with DEAD box gene DDX1.
This SPRY domain is associated with the DEAD box gene,
DDX1, an RNA-dependent ATPase involved in HIV-1 Rev
function and virus replication. It is suggested that
DDX1 acts as a cellular cofactor by promoting
oligomerization of Rev on the Rev response element
(RRE). DDX1 RNA is overexpressed in breast cancer, data
showing a strong and independent association between
poor prognosis and deregulation of the DEAD box protein
DDX1, thus potentially serving as an effective
prognostic biomarker for early recurrence in primary
breast cancer. DDX1 also interacts with RelA and
enhances nuclear factor kappaB-mediated transcription.
DEAD-box proteins are associated with all levels of RNA
metabolism and function, and have been implicated in
translation initiation, transcription, RNA splicing,
ribosome assembly, RNA transport, and RNA decay.
Length = 155
Score = 67.6 bits (166), Expect = 3e-14
Identities = 42/133 (31%), Positives = 64/133 (48%), Gaps = 18/133 (13%)
Query: 65 WSKGAAGIRGTRQLN-NGRYYWELA-TSQRLFGTSMMFGIGTRKARIHQNAFINL-IGKD 121
KG G R T+ + G+YY+E+ T + L G T A +L +G D
Sbjct: 23 EEKGWQGCRATKGVKGKGKYYYEVTVTDEGL----CRVGWSTEDA--------SLDLGTD 70
Query: 122 EHSWGLSHKGLIFHGGKFYNYTKPFPENEATRIGVLFDGIAGTLSFYKDGEYLGIAFQGL 181
+ +G G HG +F +Y +PF + + IG L D GT+SF K+G+ LG+AF
Sbjct: 71 KFGFGYGGTGKKSHGRQFEDYGEPFGKGD--VIGCLLDLDNGTISFSKNGKDLGVAFDIP 128
Query: 182 QH-VQEPLYPMIC 193
+ L+P +C
Sbjct: 129 PKLRNQALFPAVC 141
>gnl|CDD|240464 cd12884, SPRY_hnRNP, SPRY domain in heterogeneous nuclear
ribonucleoprotein U-like (hnRNP) protein 1. This
domain, consisting of the distinct N-terminal PRY
subdomain followed by the SPRY subdomain, is found at
the C-terminus of heterogeneous nuclear
ribonucleoprotein U-like (hnRNP) protein 1 (also known
as HNRPUL1 ) which is a major constituent of nuclear
matrix or scaffold and binds directly to DNA sequences
through the N-terminal acidic region named serum amyloid
P (SAP). Its function is specifically modulated by
E1B-55kDa in adenovirus-infected cells. HNRPUL1 also
participates in ATR protein kinase signaling pathways
during adenovirus infection. Two transcript variants
encoding different isoforms have been found for this
gene. When associated with bromodomain-containing
protein 7 (BRD7), it activates transcription of
glucocorticoid-responsive promoter in the absence of
ligand-stimulation.
Length = 176
Score = 61.8 bits (151), Expect = 7e-12
Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 20/144 (13%)
Query: 70 AGIRGTRQLNNGRYYWELATSQRLFGTSMMFGIGTRKARIH--------QNAFINLIGKD 121
AG R T + G+ +E+ ++ + + T + H ++ + L G++
Sbjct: 34 AGARATYGVRKGKVCFEV----KVLENLPVKHLPTEETDPHVVRVGWSVDSSSLQL-GEE 88
Query: 122 EHSWGLSHKGLIFHGGKFYNYTKPFPENEATRIGVL--FDGIAGTLSFYKDGEYLGIAFQ 179
+ S+G G GKF +Y +PF E + IG + +SF K+G+ LG+AF+
Sbjct: 89 KLSYGYGSTGKKSTNGKFEDYGEPFGEGDV--IGCYLDLESEPVEISFTKNGKDLGVAFR 146
Query: 180 GLQHVQE--PLYPMICSTAVKTQI 201
+ E L+P I + ++
Sbjct: 147 -IDKELEGKALFPHILTKNCAVEV 169
>gnl|CDD|240471 cd12891, SPRY_PRY_C-IV_2, PRY/SPRY domain in tripartite
motif-containing (TRIM) proteins, including TRIM14-like,
TRIM16-like, TRIM25-like, TRIM47-like and RNF135 and
stonustoxin. This domain, consisting of the distinct
N-terminal PRY subdomain followed by the SPRY subdomain,
is found at the C-terminus of several Class IV TRIM
proteins, including TRIM14, TRIM16 and TRIM25, TRIM47
as well as RING finger protein RNF135 and stonustoxin, a
secreted poisonous protein of the stonefish Synanceja
horrida. TRIM16 (also known as estrogen-responsive B box
protein or EBBP) has E3 ubiquitin ligase activity. It is
a regulator of keratinocyte differentiation and a tumor
suppressor in retinoid-sensitive neuroblastoma. TRIM25
(also called Efp) ubiquitinates the N terminus of the
viral RNA receptor retinoic acid-inducible gene-I
(RIG-I) in response to viral infection, leading to
activation of the RIG-I signaling pathway, thus
resulting in type I interferon production to limit viral
replication. It has been shown that the influenza A
virus targets TRIM25 and disables its antiviral
function. TRIM47, also known as GOA (Gene overexpressed
in astrocytoma protein) or RNF100 (RING finger protein
100), is highly expressed in kidney tubular cells, but
low expressed in most tissue. It is overexpressed in
astrocytoma tumor cells and plays an important role in
the process of dedifferentiation that is associated with
astrocytoma tumorigenesis. RNF135 ubiquitinates RIG-I
(retinoic acid-inducible gene-I) to promote
interferon-beta induction during the early phase of
viral infection. Stonustoxin (STNX) is a hypotensive and
lethal protein factor that also possesses other
biological activities such as species-specific hemolysis
(due to its ability to form pores in the cell membrane)
and platelet aggregation, edema-induction, and
endothelium-dependent vasorelaxation (mediated by the
nitric oxide pathway and activation of potassium
channels).
Length = 169
Score = 56.4 bits (137), Expect = 5e-10
Identities = 41/123 (33%), Positives = 53/123 (43%), Gaps = 25/123 (20%)
Query: 78 LNNGRYYWELATSQRLFGTSMMF-GIGTRKARIHQNAFINLIGKDEHSWGL--SHKGLIF 134
L++GR+YWE+ S + + IG RK + G+++ SW L S
Sbjct: 49 LSSGRHYWEVEWSGSGVSVGVAYKSIG-RKGSGDDSRL----GRNDKSWCLEWSGDKYSA 103
Query: 135 -HGGKFYNYTKPFPENEATRIGVLFDGIAGTLSFY--KDGEYLGIAFQGLQHVQ----EP 187
H K P P ++RIGV D AGTLSFY D L L Q EP
Sbjct: 104 WHNNK----ETPLPGPPSSRIGVYLDYEAGTLSFYSVSDTMTL------LHTFQTTFTEP 153
Query: 188 LYP 190
LYP
Sbjct: 154 LYP 156
>gnl|CDD|240492 cd13734, SPRY_PRY_C-I, PRY/SPRY domain in tripartite
motif-containing proteins 1, 9, 18, 36, 46, 67,76
(TRIM1, TRIM9, TRIM18, TRIM36, TRIM46, TRIM67, TRIM76).
This domain, consisting of the distinct N-terminal PRY
subdomain followed by the SPRY subdomain, is found at
the C-terminus of several Class I TRIM proteins,
including TRIM1, TRIM9, TRIM18, TRIM36, TRIM46, TRIM67
and TRIM76. TRIM1 (also known as MID2) and its close
homolog, TRIM18 (also known as MID1), both contain a
B30.2-like domain at their C-terminus and a single
fibronectin type III (FN3) motif between it and their
N-terminal RBCC domain. Their coiled-coil motifs mediate
both homo- and heterodimerization, a prerequisite for
association of the rapamycin-sensitive PP2A regulatory
subunit Alpha 4 with microtubules. Mutations in TRIM18
have shown to cause Opitz syndrome, a disorder causing
congenital anomalies such as cleft lip and palate as
well as heart defects. TRIM9 is expressed mainly in the
cerebral cortex, and functions as an E3 ubiquitin
ligase. Its immunoreactivity is severely decreased in
affected brain areas in Parkinson's disease and dementia
with Lewy bodies, possibly playing an important role in
the regulation of neuronal function and participating in
pathological process of Lewy body disease through its
ligase. TRIM36 interacts with centromere protein-H, one
of the kinetochore proteins and possibly associates with
chromosome segregation; an excess of TRIM36 may cause
chromosomal instability. TRIM46 has not yet been
characterized. TRIM67 negatively regulates Ras activity
via degradation of 80K-H, leading to neural
differentiation, including neuritogenesis. TRIM76 (also
known as cardiomyopathy-associated protein 5 or CMYA5)
is a muscle-specific member of the TRIM superfamily, but
lacks the RING domain. It is possibly involved in
protein kinase A signaling as well as vesicular
trafficking. It has also been implicated in Duchenne
muscular dystrophy and cardiac disease.
Length = 169
Score = 56.5 bits (137), Expect = 6e-10
Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 15/126 (11%)
Query: 68 GAAGIRGTRQLNNGRYYWELATSQRLFGTSMMFGIGTRKARIHQNAFINLIGKDEHSWGL 127
G+ + G +++GR+YWE++ + TS G+ + ++ + GK+ SW L
Sbjct: 42 GSYSVLGDTAISSGRHYWEVSVDR---STSYRVGVAYKSVP--RDEDL---GKNSTSWCL 93
Query: 128 SH---KGLIFHGGKFYNYTKPFPENEATRIGVLFDGIAGTLSFYKDGEYLGIAFQGLQHV 184
+ H GK + T RIGVL D GTLSFY +
Sbjct: 94 RRTNNRYSARHDGKVVDLTVTPH---PRRIGVLLDYDRGTLSFYDAESKQHL-HTFHVDF 149
Query: 185 QEPLYP 190
+EP+YP
Sbjct: 150 EEPVYP 155
>gnl|CDD|240465 cd12885, SPRY_RanBP_like, SPRY domain in Ran binding proteins,
SSH4, HECT E3 and SPRYD3. This family includes SPRY
domains found in Ran binding proteins (RBP or RanBPM) 9
and 10, SSH4 (suppressor of SHR3 null mutation protein
4), SPRY domain-containing protein 3 (SPRYD3) as well as
HECT, a C-terminal catalytic domain of a subclass of
ubiquitin-protein ligase (E3). RanBP9 and RanBP10 act as
androgen receptor (AR) coactivators. Both consist of the
N-terminal proline- and glutamine-rich regions, the SPRY
domain, and LisH-CTLH and CRA motifs. The SPRY domain in
SSH4 may be involved in cargo recognition, either
directly or by combination with other adaptors, possibly
leading to a higher selectivity. SPRYD3 is highly
expressed in most tissues in humans, possibly involved
in important cellular processes. HECT E3 mediates the
direct transfer of ubiquitin from E2 to substrate.
Length = 132
Score = 50.7 bits (122), Expect = 3e-08
Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 11/116 (9%)
Query: 79 NNGRYYWELATSQRLFGTSMMFGIGTRKARIHQNAFINLIGKDEHSWGLSHK-GLIFHGG 137
+Y+E+ + G T +++ + G ++ S+G G ++ GG
Sbjct: 12 KVPVFYFEVTILDLGEKGIVSIGFCTSGFPLNR-----MPGWEDGSYGYHGDDGRVYLGG 66
Query: 138 KFY-NYTKPFPENEATRIGVLFDGIAGTLSFYKDGEYLGIAFQGLQHVQEPLYPMI 192
NY PF + +G + G + F K+GE LG AF+ + LYP +
Sbjct: 67 GEGENYGPPFGTGD--VVGCGINFKTGEIFFTKNGELLGTAFENVVKG--RLYPTV 118
>gnl|CDD|240460 cd12880, SPRYD7, SPRY domain-containing protein 7. This family
contains SPRY domain-containing protein 7 (also known as
SPRY domain-containing protein 7 or CLL deletion region
gene 6 protein homolog or CLLD6 or chronic lymphocytic
leukemia deletion region gene 6 protein homolog). In
humans, CLLD6 is highly expressed in heart, skeletal
muscle, and testis as well as cancer cell lines. It also
has cross-species conservation, suggesting that it is
likely to carry out important cellular processes.
Length = 160
Score = 49.9 bits (120), Expect = 1e-07
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 10/93 (10%)
Query: 101 GIGTRKARIHQNAFINLIGKDEHSWGLSHKGLIFHGGKFYNYTKPFPENEATRIGVLFDG 160
G+ T K + N +G D SW L G I+H G+ K E E IGV +D
Sbjct: 46 GVATEKCDL--NRVP--LGNDSESWVLRSDGTIWHNGEVIAKLKQNVE-EGDVIGVTYD- 99
Query: 161 IAGTLSFYKDGEYLGIAFQGLQHVQEPLYPMIC 193
L+FY +G+ L G ++ +YP++
Sbjct: 100 -HVELNFYLNGKNLECPITG---IRGTVYPVVY 128
>gnl|CDD|240452 cd12872, SPRY_Ash2, SPRY domain in Ash2. This SPRY domain is found
at the C-terminus of Ash2 (absent, small, or homeotic
discs 2) -like proteins, core components of all
mixed-lineage leukemia (MLL) family histone
methyltransferases. Ash2 is a member of the trithorax
group of transcriptional regulators of the Hox genes.
Recent studies show that the SPRY domain of Ash2
mediates the interaction with RbBP5 and has an important
role in regulating the methyltransferase activity of MLL
complexes. In yeast, Ash2 is involved in histone
methylation and is required for the earliest stages of
embryogenesis.
Length = 149
Score = 48.7 bits (117), Expect = 2e-07
Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 14/132 (10%)
Query: 52 FGKNHRTVNFHPTWSKGAAGIRGTRQLNNGRYYWELA-TSQRLFGTSMMFGIGTRKARIH 110
++ TV T KG R + G++Y+E+ + G R+A +
Sbjct: 3 LSEDRLTV----TGEKGYRMARANHGVREGKWYFEVKILEGGGETGHVRVGWSRREASLQ 58
Query: 111 QNAFINLIGKDEHSWGL-SHKGLIFHGGKFYNYTKPFPENEATRIGVLFDGIAGTLSFYK 169
+G D++S+ G FH + Y +P E IG L + F+K
Sbjct: 59 AP-----VGYDKYSYAYRDKDGEKFHLSRGKPYGEP-GFKEGDVIGCLIT--LPKIEFFK 110
Query: 170 DGEYLGIAFQGL 181
+G+ G+AF+ +
Sbjct: 111 NGKSQGVAFEDI 122
>gnl|CDD|240495 cd13737, SPRY_PRY_TRIM25-like, PRY/SPRY domain in tripartite
motif-containing domain 25 (TRIM25)-like. This domain,
consisting of the distinct N-terminal PRY subdomain
followed by the SPRY subdomain, is found at the
C-terminus of proteins similar to TRIM25 (composed of
RING/B-box/coiled-coil core and also known as RBCC
proteins). TRIM25 (also called Efp) ubiquitinates the N
terminus of the viral RNA receptor retinoic
acid-inducible gene-I (RIG-I) in response to viral
infection, leading to activation of the RIG-I signaling
pathway, thus resulting in type I interferon production
to limit viral replication. It has been shown that the
influenza A virus targets TRIM25 and disables its
antiviral function.
Length = 177
Score = 49.2 bits (117), Expect = 2e-07
Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 5/128 (3%)
Query: 75 TRQLNNGRYYWELATSQRLFGTSMMFGIGTRKARIHQNAFINLIGKDEHSWGLSHKGLIF 134
TR L G +YWE S + + + + L+G++ +SW L L F
Sbjct: 49 TRGLCEGCHYWEAEVSNSWLCLGVTYRRSPPLEGRPRRNIVYLLGRNPYSWCLEWDSLKF 108
Query: 135 HGGKFYNYTKPFPENEATR-IGVLFDGIAGTLSFYKDGEYLGIAFQGLQHVQEPLYP--M 191
++N T+ + +GVL D AG LSFY + + ++ L EPLYP M
Sbjct: 109 --SVWHNNTQTVLHGNYHKTLGVLLDYTAGCLSFYGVAGTVNLLYRFLTSFLEPLYPAVM 166
Query: 192 ICSTAVKT 199
+ S A T
Sbjct: 167 VSSGASVT 174
>gnl|CDD|240476 cd12896, SPRY_PRY_TRIM65, PRY/SPRY domain in tripartite
motif-containing domain 65 (TRIM65). This domain,
consisting of the distinct N-terminal PRY subdomain
followed by the SPRY subdomain, is found at the
C-terminus of TRIM65 proteins (composed of
RING/B-box/coiled-coil core and also known as RBCC
proteins). The SPRY/PRY combination is a possible
component of immune defense. This protein family has not
been characterized.
Length = 182
Score = 47.0 bits (112), Expect = 1e-06
Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 14/115 (12%)
Query: 81 GRYYWELATSQRLFGTSMMFGIGTRKARIHQNAFINLIGKDEHSWGL---SHKGLIFHGG 137
G +YWE+ S + + RK + + N IG++ SWGL +H G
Sbjct: 63 GHHYWEVELSDHSVVLGVAYETLPRKKKGRKK---NNIGRNPLSWGLQVQEDCYSAWHNG 119
Query: 138 KFYNYTKPFPENEATRIGVLFDGIAGTLSFYKDGEYLGI--AFQGLQHVQEPLYP 190
+ + T++GV D AGTL+FY G+ +F + +PL+P
Sbjct: 120 E----EQQLQGPSYTKLGVSLDCEAGTLTFYGLGDGTQPLHSFHCI--FTQPLFP 168
>gnl|CDD|240469 cd12889, SPRY_PRY_TRIM67_9, PRY/SPRY domain in tripartite
motif-containing proteins, TRIM9 and TRIM67. This
domain, consisting of the distinct N-terminal PRY
subdomain followed by the SPRY subdomain, is found at
the C-terminus of TRIM9 proteins. TRIM9 protein is
expressed mainly in the cerebral cortex, and functions
as an E3 ubiquitin ligase. It has been shown that TRIM9
is localized to the neurons in the normal human brain
and its immunoreactivity in affected brain areas in
Parkinson's disease and dementia with Lewy bodies is
severely decreased, possibly playing an important role
in the regulation of neuronal function and participating
in pathological process of Lewy body disease through its
ligase. TRIM67 negatively regulates Ras activity via
degradation of 80K-H , leading to neural
differentiation, including neuritogenesis.
Length = 172
Score = 45.7 bits (109), Expect = 4e-06
Identities = 45/163 (27%), Positives = 65/163 (39%), Gaps = 30/163 (18%)
Query: 37 WWTWDRNDKSPDTKLFGKNHRTV---NFHPTWSKGAAGIRGTRQLNNGRYYWELATSQRL 93
W+ +D + PD L N TV ++ G+ G + G +YWE+ +
Sbjct: 9 WFQFDPSSGHPDIILSNDN-LTVTCSSYEDRVVLGSVG------FSRGVHYWEVTIDRYD 61
Query: 94 FGTSMMFGIGTRKARIHQNAFINLIGKDEHSWGL---SHKGLIFHGGKFYNYTKPFPENE 150
FG+ AR L GKD+ W + S++ H + N T E
Sbjct: 62 GHPDPAFGV----ARADVAKDKML-GKDDKGWAMYIDSNRSWFLHNNEHSNRT------E 110
Query: 151 -----ATRIGVLFDGIAGTLSFYKDGEYLG-IAFQGLQHVQEP 187
+ IGVL D GTLSFY + E G +AF L + P
Sbjct: 111 GGITVGSVIGVLLDLDRGTLSFYVNDEPQGPVAFTNLPGLFYP 153
>gnl|CDD|240472 cd12892, SPRY_PRY_TRIM18, PRY/SPRY domain of TRIM18/MID1, also
known as FXY or RNF59. This domain, consisting of the
distinct N-terminal PRY subdomain followed by the SPRY
subdomain, is at the C-terminus of the overall domain
architecture of MID1 (also known as FXY, RNF59, TRIM18)
gene represented by a RING finger domain (RING), two
B-box motifs (BBOX), coiled-coil C-terminal to Bbox
domain (BBC) and fibronectin type 3 domain (FN3).
Mutations in the human MID1 gene result in X-linked
Opitz G/BBB syndrome (OS), a disorder affecting
development of midline structures, causing craniofacial,
urogenital, gastrointestinal and cardiovascular
abnormalities. A unique MID1 gene mutation located in a
variable loop in the SPRY domain alters conformation of
the binding pocket and may affect the binding affinity
to the PRY/SPRY domain.
Length = 177
Score = 42.7 bits (100), Expect = 4e-05
Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 16/107 (14%)
Query: 66 SKGAAGIRGTRQLNNGRYYWELATSQRLFGTSMMFGIGTRKARIHQNAFINLIGKDEHSW 125
S+G+ G+ G +++GR+YWE+ S T GI + A H+ IGK+ SW
Sbjct: 40 SQGSYGVAGNVFIDSGRHYWEVVISG---STWYAIGIAYKSAPKHE-----WIGKNSASW 91
Query: 126 GLS---HKGLIFHGGKFYNYTKPF-PENEATRIGVLFDGIAGTLSFY 168
L + ++ H K P P R+G+L D G+LSFY
Sbjct: 92 VLCRCNNNWVVRHNSK----EIPIEPSPHLRRVGILLDYDNGSLSFY 134
>gnl|CDD|240489 cd12909, SPRY_RanBP9_10, SPRY domain in Ran binding proteins 9 and
10. This family includes SPRY domain in Ran binding
protein (RBP or RanBPM) 9 and 10, and similar proteins.
RanBP9 (also known as RanBPM), a binding partner of Ran,
is a small Ras-like GTPase that exerts multiple
functions via interactions with various proteins. RanBP9
and RanBP10 also act as androgen receptor (AR)
coactivators. Both consist of the N-terminal proline-
and glutamine-rich regions, the SPRY domain, and
LisH-CTLH and CRA motifs. SPRY domain of RanBPM forms a
complex with CD39, a prototypic member of the NTPDase
family, thus down-regulating activity substantially.
RanBP10 enhances the transcriptional activity of AR in a
ligand-dependent manner and exhibits a protein
expression pattern different from RanBPM in various cell
lines. RanBP10 is highly expressed in AR-positive
prostate cancer LNCaP cells, while RanBPM is abundant in
WI-38 and MCF-7 cells.
Length = 153
Score = 41.8 bits (99), Expect = 7e-05
Identities = 38/132 (28%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 67 KGAAGIRGTRQLNN--GRYYWELATSQRLFGTSMMFGIGTRKARIHQNAFINLIGKDEHS 124
K AA +R + G YY+E+ + G GIG ++ N L G ++HS
Sbjct: 18 KDAAAVRANHPIPPQCGIYYFEVKILSK--GRDGYIGIGLSTKGVNLN---RLPGWEKHS 72
Query: 125 WGL-SHKGLIFHG---GKFYNYTKPFPENEATRIGVLFDGIAGTLSFYKDGEYLGIAFQG 180
WG G F GK Y F + IG + + T+ + K+G LG AF+
Sbjct: 73 WGYHGDDGHSFSSSGTGK--PYGPTFTTGDV--IGCGINFVDNTIFYTKNGVNLGTAFRD 128
Query: 181 LQHVQEPLYPMI 192
L + LYP +
Sbjct: 129 L--PDKNLYPTV 138
>gnl|CDD|240466 cd12886, SPRY_like, SPRY domain-like in bacteria. This family
contains SPRY-like domains that are found only in
bacterial and are mostly uncharacterized. SPRY domains,
first identified in the SP1A kinase of Dictyostelium and
rabbit Ryanodine receptor (hence the name), are
homologous to B30.2. SPRY domains have been identified
in at least 11 eukaryotic protein families, covering a
wide range of functions, including regulation of
cytokine signaling (SOCS), RNA metabolism (DDX1 and
hnRNP), immunity to retroviruses (TRIM5alpha),
intracellular calcium release (ryanodine receptors or
RyR) and regulatory and developmental processes (HERC1
and Ash2L).
Length = 128
Score = 40.5 bits (95), Expect = 1e-04
Identities = 29/127 (22%), Positives = 46/127 (36%), Gaps = 25/127 (19%)
Query: 81 GRYYWELATSQRLFGTSMMFGIGTRKARIHQNAFINLIGKDEHSWGLS---HKGLI-FHG 136
G++YWE+ ++ G+ ++ I L S+G S G G
Sbjct: 1 GKWYWEVTVVSSTSSSAAGIGVAPAAVTLNNGLGIEL-----SSYGYSLGVSSGNTYSGG 55
Query: 137 GKFYNYTKPFPENEATRIGVLFDGIAGTLSFYKDGEYLG---------IAFQGLQHVQEP 187
++ F + IGV D AG + FYK+G + G AF G
Sbjct: 56 STVASFGAGFTAGDV--IGVALDLDAGKIWFYKNGVWQGSGSPAPGTNPAFAG-----TQ 108
Query: 188 LYPMICS 194
+YP +
Sbjct: 109 VYPAVTG 115
>gnl|CDD|240494 cd13736, SPRY_PRY_TRIM25, PRY/SPRY domain in tripartite
motif-containing domain 25 (TRIM25). This domain,
consisting of the distinct N-terminal PRY subdomain
followed by the SPRY subdomain, is found at the
C-terminus of TRIM25 proteins (composed of
RING/B-box/coiled-coil core and also known as RBCC
proteins). TRIM25 (also called Efp) ubiquitinates the N
terminus of the viral RNA receptor retinoic
acid-inducible gene-I (RIG-I) in response to viral
infection, leading to activation of the RIG-I signaling
pathway, thus resulting in type I interferon production
to limit viral replication. It has been shown that the
influenza A virus targets TRIM25 and disables its
antiviral function.
Length = 169
Score = 39.1 bits (91), Expect = 6e-04
Identities = 31/134 (23%), Positives = 57/134 (42%), Gaps = 12/134 (8%)
Query: 60 NFHPTWSKGAAGIRGTRQLNNGRYYWELATSQRLFGTSMMFGIGTRKARIHQNAFINLIG 119
HP + + GT+ G +YWE+ F G+G + + + +G
Sbjct: 31 PEHPQRFTVCSQVLGTKCFKQGIHYWEVEMQSNNF-----CGLGICYGSMDRQGPSSRLG 85
Query: 120 KDEHSWGL---SHKGLIFHGGKFYNYTKPFPENEATRIGVLFDGIAGTLSFYKDGEYLGI 176
++ SW + + K +H + K P +ATR+GVL D G ++FY + +
Sbjct: 86 RNSESWCVEWFNVKISAWHN----SVEKVLPNTKATRVGVLLDCDQGFVTFYNVQDKAYL 141
Query: 177 AFQGLQHVQEPLYP 190
++ + E +YP
Sbjct: 142 FYKFVFPFTEAVYP 155
>gnl|CDD|240467 cd12887, SPRY_NHR_like, SPRY domain in neuralized homology repeat.
This family contains the neuralized homology repeat 1
(NHR1) domain similar to the SPRY domain (known to
mediate specific protein-protein interactions) at the
C-terminus of a conserved region within eukaryotic
neuralized and neuralized-like proteins. In Drosophila,
the neuralized protein (Neur) belongs to a group of
ubiquitin ligases and is required in a subset of Notch
pathway-mediated cell fate decisions during development
of the nervous system. Neur binds to the Notch receptor
ligand Delta through its first NHR1 domain and mediates
its ubiquitination for endocytosis. Multiple copies of
this region are found in some members of the family.
Length = 161
Score = 38.6 bits (91), Expect = 8e-04
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 123 HSWGLSHKGLIFHGGK--FYNYTKPFPE-NEATRIGVLFDGIAGTLSFYKDGEYLGIAFQ 179
+W LS +F G NY R+GV+ G+L FY +GE G+A
Sbjct: 82 GTWILSGSS-VFKNGNKVRENYGPDLDRLRVGDRVGVMRTP-DGSLHFYINGEDQGVAAS 139
Query: 180 GLQHVQEPLYPMIC 193
+ +P+Y ++
Sbjct: 140 N---IPQPVYAVVD 150
>gnl|CDD|240454 cd12874, SPRY_PRY, PRY/SPRY domain, also known as B30.2. This
domain contains residues in the N-terminus that form a
distinct PRY domain structure such that the B30.2 domain
consists of PRY and SPRY subdomains. B30.2 domains
comprise the C-terminus of three protein families: BTNs
(receptor glycoproteins of immunoglobulin superfamily);
several TRIM proteins (composed of
RING/B-box/coiled-coil core); Stonutoxin (secreted
poisonous protein of the stonefish Synanceia horrida).
While SPRY domains are evolutionarily ancient, B30.2
domains are a more recent adaptation where the SPRY/PRY
combination is a possible component of immune defense.
Among the TRIM proteins, also known as the N-terminal
RING finger/B-box/coiled coil (RBCC) family, only
Classes I and IV contain the B30.2 domain that has
evolved under positive selection. Class IV TRIM proteins
include multiple members involved in antiviral immunity
at various levels of interferon signaling cascade.
Length = 167
Score = 35.9 bits (83), Expect = 0.008
Identities = 27/125 (21%), Positives = 45/125 (36%), Gaps = 22/125 (17%)
Query: 57 RTVNFHPTWSKGAAGIR---------GTRQLNNGRYYWEL-ATSQRLFGTSMMFGIGTRK 106
R+V + KG G G +GR+YWE+ +++ + + +RK
Sbjct: 19 RSVTWGDKGQKGPEGPERFDSWYTVLGDTSFLSGRHYWEVEVQKSKVYIVGVAYKSLSRK 78
Query: 107 ARI---HQNAFINLIGKDEHSWGLSHKGLIFHGGKFYNYTKPFPENEATRIGVLFDGIAG 163
N + + + + SH + PE R+GV D G
Sbjct: 79 GSCRLGKNNGSWVVHCNNWNEFAASHNNPVTPLD-----VTVGPE----RVGVFLDFDVG 129
Query: 164 TLSFY 168
+LSFY
Sbjct: 130 SLSFY 134
>gnl|CDD|240496 cd13738, SPRY_PRY_TRIM14, PRY/SPRY domain of tripartite
motif-binding protein 14 (TRIM14). This is a TRIM14
domain family contains residues in the N-terminus that
form a distinct PRY domain structure such that the B30.2
domain consists of PRY and SPRY subdomains. TRIM14
domains have yet to be characterized. These B30.2
domains are a more recent adaptation where the SPRY/PRY
combination is a possible component of immune defense.
It belongs to Class IV TRIM protein family which has
members involved in antiviral immunity at various levels
of interferon signaling cascade.
Length = 173
Score = 35.7 bits (82), Expect = 0.010
Identities = 33/120 (27%), Positives = 49/120 (40%), Gaps = 22/120 (18%)
Query: 81 GRYYWELATSQRLFGTSMMFGIGTRKARIHQNAFINLIGKDEHSWGLSHKGL---IFHGG 137
GR+YWE+ + G G R ++ +G + SW + L FH G
Sbjct: 52 GRHYWEVDVQEA--GAGWWVGAAYPSLRRRGDSEAARLGCNRASWCIKRYDLEYWAFHDG 109
Query: 138 KFYNYTKPFPENEATRIGVLFDGIAGTLSFYKDGEYLGIAFQGLQHV-------QEPLYP 190
+ ++ ++ R+GV D AG LSFY G+ H+ QEPLYP
Sbjct: 110 Q---RSRLRIRDDPDRLGVFLDYEAGILSFYD-------VTGGMSHLHTFRAKFQEPLYP 159
>gnl|CDD|240497 cd13739, SPRY_PRY_TRIM1, PRY/SPRY domain of tripartite
motif-binding protein 1 (TRIM1) or MID2. This domain,
consisting of the distinct N-terminal PRY subdomain
followed by the SPRY subdomain, is found at the
C-terminus of TRIM1 (also known as MID2 or midline 2).
MID2 and its close homolog, TRIM18 (also known as MID1),
both contain a B30.2-like domain at their C-terminus and
a single fibronectin type III (FN3) motif between it and
their N-terminal RBCC domain. MID2 and MID1 coiled-coil
motifs mediate both homo- and heterodimerization, a
prerequisite for association of the rapamycin-sensitive
PP2A regulatory subunit Alpha 4 with microtubules.
Mutations in MID1 have shown to cause Opitz syndrome, a
disorder causing congenital anomalies such as cleft lip
and palate as well as heart defects.
Length = 168
Score = 34.7 bits (79), Expect = 0.019
Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 17/118 (14%)
Query: 54 KNHRTVNFHPTWSKGAAGIRGTRQLNNGRYYWELATSQRLFGTSMMFGIGTRKARIHQNA 113
K+H F T GAAG +++G +YWE+ G+S + IG +N
Sbjct: 30 KSHTPERFSGTGCYGAAG---NIFIDSGCHYWEVVV-----GSSTWYAIGIAYKSAPKNE 81
Query: 114 FINLIGKDEHSWGLS---HKGLIFHGGKFYNYTKPFPENEATRIGVLFDGIAGTLSFY 168
+I GK+ SW S + ++ H K P + R+GVL D LSFY
Sbjct: 82 WI---GKNASSWVFSRCNNNFVVRHNNKEMLVDVP---PQLKRLGVLLDYDNNMLSFY 133
>gnl|CDD|240461 cd12881, SPRY_HERC1, SPRY domain in HERC1. This SPRY domain is
found in the HERC1, a large protein related to
chromosome condensation regulator RCC1. It is widely
expressed in many tissues, playing an important role in
intracellular membrane trafficking in the cytoplasm as
well as Golgi apparatus. HERC1 also interacts with
tuberous sclerosis 2 (TSC2, tuberin), which suppresses
cell growth, and results in the destabilization of TSC2.
However, the biological function of HERC1 has yet to be
defined.
Length = 160
Score = 34.2 bits (79), Expect = 0.030
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 154 IGVLFDGIAGTLSFYKDGEYLGIAFQGLQHVQEPLYPMIC--STAVKTQISLE 204
I + D TLSF K+GE G+AF+ + LYP + S+ ++ ++
Sbjct: 108 ITCVLDMEERTLSFGKNGEEPGVAFEDVD--STELYPCVMFYSSNPGEKVKIK 158
>gnl|CDD|240503 cd13745, SPRY_PRY_TRIM39, PRY/SPRY domain in butyrophilins and
butyrophilins-like proteins, pyrin, as well as
tripartite motif-containing proteins (TRIM21, 27 and
others). This domain, consisting of the distinct
N-terminal PRY subdomain followed by the SPRY subdomain,
is found at the C-terminus of pyrin, several tripartite
motif-containing proteins (TRIMs), including E3
ubiquitin-protein ligase (TRIM21), RET finger protein
(RFP)/tripartite motif protein 27 (TRIM27), as well as
butyrophilin (Btns) and butyrophilin-like (Btnl) family
members, with the exception of Btnl2. Btn and Btnl
family members are novel regulators of immune responses,
with many of the genes located within the MHC. They are
implicated in T-cell inhibition and modulation of
epithelial cell-T cell interactions. TRIM21 (also known
as RO52, SSA1 or RNF81) is a major autoantigen in
autoimmune diseases such as rheumatoid arthritis,
systemic lupus erythematosus, and Sjorgen's syndrome.
TRIM27 (also known as Ret finger protein, RFP or RNF76)
negatively regulates CD4 T-cells by ubiquitinating and
inhibiting the class II phosphatidylinositol 3 kinase
C2beta (PI3K-C2beta), a kinase critical for KCa3.1
channel activation. The PRY/SPRY domain of Pyrin, which
is mutated in familial Mediterranean fever patients,
interacts with inflammasome components and inhibits
proIL-1beta processing.
Length = 184
Score = 32.7 bits (74), Expect = 0.11
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 14/101 (13%)
Query: 72 IRGTRQLNNGRYYWELATSQRLFGTSMMFGIGTRKARIHQNAFINLIGKDEHSWGLSHKG 131
+ T +GR+YWE+ G + +G + + + + + + + W +
Sbjct: 48 VLATEGFTSGRHYWEVEV-----GDKTHWAVGVCRDSVSRKGELTPLPETGY-WRVR--- 98
Query: 132 LIFHGGKFYNYTKPF-PEN---EATRIGVLFDGIAGTLSFY 168
+++G K+ T PF P + + R+G+ D AGTLSFY
Sbjct: 99 -LWNGDKYAATTTPFTPLHIKVKPKRVGIFLDYEAGTLSFY 138
>gnl|CDD|240478 cd12898, SPRY_PRY_TRIM76, PRY/SPRY domain in tripartite
motif-containing protein 76 (TRIM76), also called
cardiomyopathy-associated protein 5. This domain,
consisting of the distinct N-terminal PRY subdomain
followed by the SPRY subdomain, is found at the
C-terminus of TRIM76, a Class I TRIM protein. TRIM76
(also known as cardiomyopathy-associated protein 5 or
CMYA5 or myospryn or SPRYD2) is a muscle-specific member
of the TRIM superfamily, but lacks the RING domain. It
has been suggested that TRIM76 is involved in two
distinct processes, protein kinase A signaling and
vesicular trafficking. It has also been implicated in
Duchenne muscular dystrophy and cardiac disease; gene
polymorphism of TRIM76 is associated with left
ventricular wall thickness in patients with hypertension
while its interactions with M-band titin and calpain 3
link it to tibial and limb-girdle muscular dystrophies.
Length = 171
Score = 32.5 bits (74), Expect = 0.12
Identities = 37/154 (24%), Positives = 55/154 (35%), Gaps = 24/154 (15%)
Query: 46 SPDTKLFGKNHRTVNFHPTWSKGAAGIRGTRQLNNGRYYWELATSQRLFGTSMMFGIGTR 105
S D H PT + + G + GRYYWE ++ T+ GI
Sbjct: 18 SADRTTVIYCHEAPEGSPTDT-ECPSVLGELLPSPGRYYWETVVTR---CTAYRIGICYG 73
Query: 106 KARIHQNAFINLIGKDEHSWGL-------SHKGLIFHGGKFYNYTKPFPENEATRIGVLF 158
+G++ SW L S + + H + F RIG L
Sbjct: 74 TTSQRSP-----LGENSTSWCLHCVPTVSSCRYHLLHINV---QSDVFVTETPARIGTLL 125
Query: 159 DGIAGTLSFY--KDGEYLGIAFQGLQHVQEPLYP 190
D G LSF+ + G+ LG F+ +P +P
Sbjct: 126 DYNLGRLSFFNAESGQVLGA-FR--HKFAQPCHP 156
>gnl|CDD|240477 cd12897, SPRY_PRY_TRIM50_62_72, PRY/SPRY domain in tripartite
motif-binding (TRIM) proteins TRIM50, TRIM62 and TRIM72.
This domain, consisting of the distinct N-terminal PRY
subdomain followed by the SPRY subdomain, is found at
the C-terminus of several TRIM proteins, including
TRIM72, TRIM62 and TRIM50. TRIM72 (also known as MG53)
has been shown to perform a critical function in
membrane repair following acute muscle injury by
nucleating the assembly of the repair machinery at
injury sites. It is expressed specifically in skeletal
muscle and heart, and tethered to the plasma membrane
and cytoplasmic vesicles via its interaction with
phosphatidylserine. TRIM62 is involved in the
morphogenesis of the mammary gland; loss of TRIM62 gene
expression in breast is associated with increased risk
of recurrence in early-onset breast cancer. TRIM50, an
E3 ubiquitin ligase, is deleted in Williams-Beuren (WBS)
syndrome, a multi-system neurodevelopmental disorder
caused by the deletion of contiguous genes at chromosome
region 7q11.23.
Length = 186
Score = 32.3 bits (74), Expect = 0.15
Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 30/107 (28%)
Query: 74 GTRQLNNGRYYWELATSQRLFGTSMMFGIG----TRKARIH---QNAFINLIGKDEHSWG 126
+ ++GR+YWE+ + T G+ +RK ++ +N F W
Sbjct: 58 ASEGFSSGRHYWEVDVGDK---TKWDLGVASETVSRKGKLQLSPENGF----------WT 104
Query: 127 LSHKGLIFHGGKFYN-----YTKPFPENEATRIGVLFDGIAGTLSFY 168
+ GK Y +T+ +IGV D G +SFY
Sbjct: 105 IG-----LKDGKEYEACTEPWTRLNVSGRPQKIGVFLDCEEGEVSFY 146
>gnl|CDD|240491 cd13733, SPRY_PRY_C-IV_1, PRY/SPRY domain in tripartite
motif-containing (TRIM) proteins, including TRIM7,
TRIM35, TRIM41, TRIM50, TRIM62, TRIM69, TRIM72, NF7 and
bloodthirsty (bty). This domain, consisting of the
distinct N-terminal PRY subdomain followed by the SPRY
subdomain, is found at the C-terminus of several Class
IV TRIM proteins, including TRIM7, TRIM35, TRIM41,
TRIM50, TRIM62, TRIM69, TRIM72, TRIM protein NF7 and
bloodthirsty (bty). TRIM7 interacts with glycogenin and
stimulates its self-glucosylating activity via its SPRY
domain. TRIM35 may play a role as a tumor suppressor and
is implicated in the cell death mechanism. TRIM41 is
localized to speckles in the cytoplasm and nucleus, and
functions as an E3 ligase that catalyzes the
ubiquitin-mediated degradation of protein kinase C.
TRIM50, an E3 ubiquitin ligase, is deleted in
Williams-Beuren (WBS) syndrome, a multi-system
neurodevelopmental disorder caused by the deletion of
contiguous genes at chromosome region 7q11.23. TRIM62 is
involved in the morphogenesis of the mammary gland; loss
of TRIM62 gene expression in breast is associated with
increased risk of recurrence in early-onset breast
cancer. TRIM69 is a novel testis E3 ubiquitin ligase
that may function to ubiquitinate its particular
substrates during spermatogenesis. In humans, TRIM69
localizes in the cytoplasm and nucleus, and requires an
intact RING finger domain to function. TRIM protein NF7,
which also contains a chromodomain (CHD) at the
N-terminus and an RFP (Ret finger protein)-like domain
at the C-terminus, is required for its association with
transcriptional units of RNA polymerase II which is
mediated by a trimeric B box. In Xenopus oocyte, xNF7
has been identified as a nuclear microtubule-associated
protein (MAP) whose microtubule-bundling activity, but
not E3-ligase activity, contributes to microtubule
organization and spindle integrity. Bloodthirsty (bty)
is a novel gene identified in zebrafish and has been
shown to likely play a role in in regulation of the
terminal steps of erythropoiesis. TRIM72 has been shown
to perform a critical function in membrane repair
following acute muscle injury by nucleating the assembly
of the repair machinery at injury sites.
Length = 176
Score = 32.1 bits (73), Expect = 0.16
Identities = 30/130 (23%), Positives = 44/130 (33%), Gaps = 25/130 (19%)
Query: 74 GTRQLNNGRYYWELATSQRLFGTSMMFGI----GTRKARIH---QNAFINLIGKDEHSWG 126
G+R ++GR+YWE+ TS G+ RK + + F + +
Sbjct: 46 GSRGFSSGRHYWEVEVGD---KTSWRLGVVRESIDRKGECYLDPEQGFWLVGLRQGKGLE 102
Query: 127 LSHKGLIFHGGKFYNYTKPFP---ENEATRIGVLFDGIAGTLSFYKDGEYLGIAFQGLQH 183
H P P RIGV D G LSFY + E + +
Sbjct: 103 ADHC-----------VPPPTPLVLAERPRRIGVYLDYEGGELSFY-NAEAMCHIYTFHAR 150
Query: 184 VQEPLYPMIC 193
P+YP
Sbjct: 151 FPGPVYPFFY 160
>gnl|CDD|177480 PHA02698, PHA02698, hypothetical protein; Provisional.
Length = 89
Score = 30.6 bits (69), Expect = 0.18
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 1 MDDHQVNGVLLAFPSPTPLGLESSSMADM 29
+DD QVNG L+ P PTP + S DM
Sbjct: 18 LDDVQVNGDLMPTPEPTPEEVPQCSPEDM 46
>gnl|CDD|239709 cd03740, SOCS_SOCS6, SOCS (suppressors of cytokine signaling) box
of SOCS6-like proteins. Together with CIS1, the CIS/SOCS
family of proteins is characterized by the presence of a
C-terminal SOCS box and a central SH2 domain. The
general function of the SOCS box is the recruitment of
the ubiquitin-transferase system. The SOCS box interacts
with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and
E2. Therefore, SOCS-box-containing proteins probably
function as E3 ubiquitin ligases and mediate the
degradation of proteins associated through their
N-terminal regions.
Length = 41
Score = 29.3 bits (66), Expect = 0.22
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 213 LQDRCRSIIIKTMNQADLDLVKLPTPIRTYIEEA 246
LQ CR +I + + + LP ++ Y+ E
Sbjct: 6 LQYLCRFVIRQYTRIDLIQKLPLPNKMKGYLLEK 39
>gnl|CDD|239687 cd03717, SOCS_SOCS_like, SOCS (suppressors of cytokine signaling)
box of SOCS-like proteins. The CIS/SOCS family of
proteins is characterized by the presence of a
C-terminal SOCS box and a central SH2 domain. These
intracellular proteins regulate the responses of immune
cells to cytokines. Identified as negative regulators of
the cytokine-JAK-STAT pathway, they seem to play a role
in many immunological and pathological processes. The
function of the SOCS box is the recruitment of the
ubiquitin-transferase system. Related SOCS boxes are
also present in Rab40-like proteins and insect proteins
of unknown function that also contain a NEUZ (domain in
neuralized proteins) domain.
Length = 39
Score = 28.7 bits (65), Expect = 0.32
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 213 LQDRCRSIIIKTMNQADLDLVKLPTPIRTYIEE 245
LQ CR +I + + +D + LP ++ Y++E
Sbjct: 6 LQHLCRFVIRQCTRRDLIDQLPLPRRLKDYLKE 38
>gnl|CDD|239707 cd03738, SOCS_SOCS4, SOCS (suppressors of cytokine signaling) box
of SOCS4-like proteins. Together with CIS1, the CIS/SOCS
family of proteins is characterized by the presence of a
C-terminal SOCS box and a central SH2 domain. The
general function of the SOCS box is the recruitment of
the ubiquitin-transferase system. The SOCS box interacts
with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and
E2. Therefore, SOCS-box-containing proteins probably
function as E3 ubiquitin ligases and mediate the
degradation of proteins associated through their
N-terminal regions.
Length = 56
Score = 29.2 bits (65), Expect = 0.35
Identities = 9/34 (26%), Positives = 20/34 (58%)
Query: 212 NLQDRCRSIIIKTMNQADLDLVKLPTPIRTYIEE 245
+LQ CR++I +D + +P+ ++ Y++E
Sbjct: 5 SLQHICRTVICNCTTYDGIDALPIPSSMKLYLKE 38
>gnl|CDD|240470 cd12890, SPRY_PRY_TRIM16, PRY/SPRY domain in tripartite
motif-containing protein 16 (TRIM16). This domain,
consisting of the distinct N-terminal PRY subdomain
followed by the SPRY subdomain, is found at the
C-terminus of TRIM16 proteins. TRIM16 (also known as
estrogen-responsive B box protein or EBBP) does not
possess a RING domain like the other TRIM proteins, but
contains two B-box domains and can heterodimerize with
other TRIM proteins such as TRIM24, Promyelocytic
leukemia (PML) protein and Midline-1 (MID1 or TRIM18).
It is a regulator of keratinocyte differentiation and a
tumor suppressor in retinoid-sensitive neuroblastoma. It
has been shown that loss of TRIM16 expression plays an
important role in the development of cutaneous squamous
cell carcinoma (SCC) and is a determinant of retinoid
sensitivity. TRIM16 also has E3 ubiquitin ligase
activity.
Length = 172
Score = 31.0 bits (70), Expect = 0.40
Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 9/112 (8%)
Query: 81 GRYYWELATSQRLFGTSMMFGIGTRKARIHQNAFINLIGKDEHSWGLSHKGLIFHGGKFY 140
GR+Y+E+ + G G+ + + + I + SW L G F
Sbjct: 53 GRHYFEV----EIKGEGTYVGLTYKGIDRKGSESNSCITGNNFSWCLQWNGKEF-SAWHS 107
Query: 141 NYTKPFPENEATRIGVLFDGIAGTLSFY--KDGEYLGIAFQGLQHVQEPLYP 190
+ P + +R+G+ D G LSFY G L F+ + EPLYP
Sbjct: 108 DVETPLKVGKFSRVGIYVDYPRGCLSFYGVTGGMTLLHKFRC--NFSEPLYP 157
>gnl|CDD|219451 pfam07525, SOCS_box, SOCS box. The SOCS box acts as a bridge
between specific substrate- binding domains and more
generic proteins that comprise a large family of E3
ubiquitin protein ligases.
Length = 38
Score = 28.2 bits (64), Expect = 0.42
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 213 LQDRCRSIIIKTMNQADLDLVK---LPTPIRTYI 243
LQ CR I +++ + L + LP ++ Y+
Sbjct: 4 LQHLCRLAIRRSLGRDRLHAIDKLPLPPRLKDYL 37
>gnl|CDD|240462 cd12882, SPRY_RNF123, SPRY domain at N-terminus of ring finger
protein 123. This SPRY domain is found at the
N-terminus of RING finger protein 123 domain (also known
as E3 ubiquitin-protein ligase RNF123). The ring finger
domain motif is present in a variety of functionally
distinct proteins and known to be involved in
protein-protein and protein-DNA interactions. RNF123
displays E3 ubiquitin ligase activity toward the
cyclin-dependent kinase inhibitor p27 (Kip1).
Length = 128
Score = 30.0 bits (68), Expect = 0.57
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 154 IGVLFDGIAGTLSFYKDGEYLGIAFQGL 181
IG D GT+SFY++G LG+AF +
Sbjct: 76 IGCCIDLDEGTISFYRNGRSLGVAFDNV 103
>gnl|CDD|240482 cd12902, SPRY_PRY_RNF135, PRY/SPRY domain in RING finger protein
RNF135. This domain, consisting of the distinct
N-terminal PRY subdomain followed by the SPRY subdomain,
is found at the C-terminus of the RING finger protein
RNF135 (also known as Riplet/RNF135), which
ubiquitinates RIG-I (retinoic acid-inducible gene-I) to
promote interferon-beta induction during the early phase
of viral infection. Normally, RIG-I is activated by
TRIM25 in response to viral infection, leading to
activation of the RIG-I signaling pathway, thus
resulting in type I interferon production to limit viral
replication. However, RNF135, consisting of an
N-terminal RING finger domain, C-terminal SPRY and PRY
motifs and showing sequence similarity to TRIM25, acts
as an alternative factor that promotes RIG-I activation
independent of TRIM25.
Length = 168
Score = 30.2 bits (68), Expect = 0.58
Identities = 32/119 (26%), Positives = 47/119 (39%), Gaps = 20/119 (16%)
Query: 78 LNNGRYYWELATSQRLFGTSMMFGIGTRKARIHQNAFINLIGKDEHSWGLSHKG----LI 133
++G +YWE+ T S + +G I + + +G+ SW + G
Sbjct: 48 FSSGCHYWEVDTRN-----SSGWAVGVASWEIGRR---DKLGRTMDSWCIEWSGPKQLSA 99
Query: 134 FHGGKFYNYTKPFPENEATRIGVLFDGIAGTLSFYK--DGEYLGIAFQGLQHVQEPLYP 190
+H K K P +GV D GTLSFY + E L F+ PLYP
Sbjct: 100 WHKNKKTFLGKDKPS----VVGVFLDLENGTLSFYSVDNQERLLHEFE--VSFSSPLYP 152
>gnl|CDD|239641 cd03587, SOCS, SOCS (suppressors of cytokine signaling) box. The
SOCS box is found in the C-terminal region of CIS/SOCS
family proteins (in combination with a SH2 domain), ASBs
(ankyrin repeat-containing proteins with a SOCS box),
SSBs (SPRY domain-containing proteins with a SOCS box),
and WSBs (WD40 repeat-containing proteins with a SOCS
box), as well as, other miscellaneous proteins. The
function of the SOCS box is the recruitment of the
ubiquitin-transferase system. The SOCS box interacts
with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and
E2. Therefore, SOCS-box-containing proteins probably
function as E3 ubiquitin ligases and mediate the
degradation of proteins associated through their
N-terminal regions.
Length = 41
Score = 27.8 bits (63), Expect = 0.72
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 213 LQDRCRSIIIKTMNQADLDLVK---LPTPIRTYI 243
LQ CR I + + + LDL+ LP ++ Y+
Sbjct: 5 LQHLCRLAIRRCLGKRRLDLIDKLPLPPRLKDYL 38
>gnl|CDD|240480 cd12900, SPRY_PRY_Btn_TRIMs, PRY/SPRY domain in butyrophilins and
butyrophilins-like proteins, pyrin, as well as
tripartite motif-containing proteins (TRIM4, 5, 6, 11,
21, 22, 27, 30, 34, 38, 58, 60, 68, 75). This domain,
consisting of the distinct N-terminal PRY subdomain
followed by the SPRY subdomain, is found at the
C-terminus of pyrin, several tripartite motif-containing
proteins (TRIMs), as well as butyrophilin (Btns) and
butyrophilin-like (Btnl) family members, with the
exception of Btnl2. Btn and Btnl family members are
novel regulators of immune responses, with many of the
genes located within the MHC. They are implicated in
T-cell inhibition and modulation of epithelial cell-T
cell interactions. Expression of TRIM4 (also known as
ring finger protein 87 or RNF87) genes, including that
of CHCHD2 and PKIB, differs significantly in
Huntington's disease (HD), a prototypical genetic
disorder with delayed clinical onset, despite ubiquitous
expression of the mutated gene during development.
TRIM5-alpha is a cytoplasmic protein that recognizes the
incoming capsid (CA) protein of retroviruses and
potently inhibits virus infection in a species-specific
manner; it recognizes and interacts directly with HIV
CA, thus disrupting the ordered process of viral
uncoating, and subsequent reverse transcription and
virus replication, while species-specific differences
are determined by sequence variations within the
C-terminal B30.2/PRYSPRY domain. TRIM6 regulates the
transcriptional activity of proto-oncogene product Myc
during the maintenance of ES cell pluripotency,
suggesting that TRIM6 functions as a novel regulator for
Myc-mediated transcription in ES cells. TRIM11 is
involved in the function and development of the nervous
system and is overexpressed in high-grade gliomas and
promotes proliferation, invasion, migration and glial
tumor growth. TRIM21 (also known as RO52, SSA1 or RNF81)
is a major autoantigen in autoimmune diseases such as
rheumatoid arthritis, systemic lupus erythematosus, and
Sjorgen's syndrome. TRIM21 interacts with connexin 43
(Cx43) providing mechanisms for down-regulation of gap
junction (GJ) intercellular communication thus impacting
a variety of physiological processes. Expression of the
TRIM34 gene is up-regulated by interferon and is mapped
to chromosome 11p15, where it resides within a TRIM gene
cluster. TRIM30 alpha negatively regulates Toll-like
receptor (TLR)-mediated NF-kappa B activation by
targeting degradation of adaptors TAB2 and TAB3 that are
in complex with kinase TAK1. TRIM5 gene's closest human
paralogs are TRIM6, TRIM22 and TRIM34. It has also been
shown that the RBCC domains of TRIM6, 21 and 34 can
functionally replace the corresponding domains of
TRIM5alpha with respect to inhibition of HIV-1 infection
through binding of the chimeras to HIV-1 capsid
complexes. TRIM27 (also known as Ret finger protein, RFP
or RNF76) negatively regulates CD4 T-cells by
ubiquitinating and inhibiting the class II
phosphatidylinositol 3 kinase C2beta (PI3K-C2beta), a
kinase critical for KCa3.1 channel activation. It is
also a specific binding partner for NOD2, the
nucleotide-binding domain and leucine-rich repeat
containing gene family (NLR) member 2 involved in
mediating antimicrobial responses. It negatively
regulates NOD2-mediated signaling by degrading NOD2, and
therefore a potential target for therapeutic
intervention in NOD2-associated diseases such as
early-onset sarcoidosis and Blau syndrome. TRIM38
negatively regulates Toll-like receptor 3
(TLR3)-mediated type I interferon signaling by targeting
TIR domain-containing adaptor inducing IFN-beta (TRIF).
TRIM60 (also known as RNF33 or ring finger protein 33)
interacts with kinesin-2 family members 3A (KIF3A) and
3B (KIF3B) motor proteins known to transport cargos
along the microtubule, possibly contributing to
kinesin-dependent mobilization of specific cargos along
the microtubule. TRIM68 regulates ligand-dependent
transcription of androgen receptor in prostate cancer
cells; its overexpression causes an increase in
prostate-specific antigen (PSA), a reliable diagnostic
marker for prostate cancer, making TRIM68 a likely novel
diagnostic tool and a potentially therapeutic target.
The PRY/SPRY domain of pyrin, which is mutated in
familial Mediterranean fever patients, interacts with
inflammasome components and inhibits proIL-1beta
processing.
Length = 173
Score = 30.2 bits (69), Expect = 0.75
Identities = 30/132 (22%), Positives = 50/132 (37%), Gaps = 44/132 (33%)
Query: 81 GRYYWELATSQRLFGTSMMFGIG------TRKARIH---QNAFINLIGKDEHSWGLSHKG 131
GR+YWE+ G + +G +RK ++ +N F W + +
Sbjct: 56 GRHYWEVEV-----GDKTEWALGVCRESVSRKGKVPLSPENGF----------WVIGLQN 100
Query: 132 LIFHGGKFYNYTKP----FPENEATRIGVLFDGIAGTLSFY--KDGEYL----GIAFQGL 181
G +++ +T P + R+G+ D AG +SFY DG ++ F G
Sbjct: 101 ----GSEYWAFTSPPTPLSLKVPPRRVGIFLDYEAGEVSFYNVTDGSHIYTFSDCFFSG- 155
Query: 182 QHVQEPLYPMIC 193
PL P
Sbjct: 156 -----PLRPYFS 162
>gnl|CDD|128549 smart00253, SOCS, suppressors of cytokine signalling. suppressors
of cytokine signalling.
Length = 43
Score = 27.3 bits (61), Expect = 1.0
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 213 LQDRCRSIIIKTMNQADLDLVKLPTPIRTYIEE 245
LQ CR I + + + LP ++ Y+
Sbjct: 10 LQHLCRFTIRRCTRTDQIKTLPLPPKLKDYLSY 42
>gnl|CDD|239705 cd03736, SOCS_SOCS2, SOCS (suppressors of cytokine signaling) box
of SOCS2-like proteins. Together with CIS1, the CIS/SOCS
family of proteins is characterized by the presence of a
C-terminal SOCS box and a central SH2 domain. SOCS2 has
recently been shown to regulate neuronal differentiation
by controlling expression of a neurogenic transcription
factor, Neurogenin-1. SOCS2 binds to GH receptors and
inhibits the activation of STAT5b induced by GH. The
general function of the SOCS box is the recruitment of
the ubiquitin-transferase system. The SOCS box interacts
with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and
E2. Therefore, SOCS-box-containing proteins probably
function as E3 ubiquitin ligases and mediate the
degradation of proteins associated through their
N-terminal regions.
Length = 41
Score = 27.1 bits (60), Expect = 1.0
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 212 NLQDRCRSIIIKTMNQADLDLVKLPTPIRTYIEE 245
+LQ CR I K Q + + LPT ++ Y+ E
Sbjct: 5 SLQHLCRITINKCTRQ--IQELPLPTRLKDYLTE 36
>gnl|CDD|240097 cd04749, Commd1_MURR1, COMM_Domain containing protein 1, also
called Murr1. Murr1/Commd1 is a protein involved in
copper homeostasis, which has also been identified as a
regulator of the human delta epithelial sodium channel.
The COMM Domain is found at the C-terminus of a variety
of proteins; presumably all COMM_Domain containing
proteins are located in the nucleus and the COMM domain
plays a role in protein-protein interactions. Several
family members have been shown to bind and inhibit
NF-kappaB.
Length = 174
Score = 29.4 bits (66), Expect = 1.2
Identities = 10/47 (21%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 189 YPMICSTAVKTQISLEVARRDFINLQDRCRSIIIKTMNQADLDLVKL 235
I +++++ E +F L ++ R ++K++ AD+D+ +L
Sbjct: 16 NAEITEELLRSELYPEDPLEEFRALHNKMRG-LLKSIASADMDINQL 61
>gnl|CDD|149910 pfam08992, QH-AmDH_gamma, Quinohemoprotein amine dehydrogenase,
gamma subunit. Members of this family contain a
cross-linked, proteinous quinone cofactor, cysteine
tryptophylquinone, which is required for catalysis of
the oxidative deamination of a wide range of aliphatic
and aromatic amines. The domain assumes a globular
secondary structure, with two short alpha-helices
having many turns and bends.
Length = 78
Score = 27.8 bits (62), Expect = 1.6
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 17/46 (36%)
Query: 27 ADMFKYGCDD--WWTWDRNDKSPDTKLFGKNHRTVNFHPTWSKGAA 70
AD+ YGC D WW + PDT ++ +P WS A
Sbjct: 31 ADL--YGCSDPCWWP----AQVPDT---------MSTYPDWSADAD 61
>gnl|CDD|240483 cd12903, SPRY_PRY_SPRYD4, PRY/SPRY domain containing protein 4
(SPRYD4). This domain, consisting of the distinct
N-terminal PRY subdomain followed by the SPRY subdomain
and is encoded by the SPRYD4 gene. SPRYD4 (SPRY
containing domain 4) is ubiquitously expressed in many
human tissues, most strongly in kidney, bladder, brain,
thymus and stomach. Subcellular localization
demonstrates that SPRYD4 protein is localized in the
nucleus when overexpressed in COS-7 green monkey cell.
It has remained uncharacterized thus far.
Length = 169
Score = 28.7 bits (64), Expect = 2.1
Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 18/122 (14%)
Query: 50 KLFGKNHRTVNFHPTWSKGAAGIRGTRQLNNGRYYWELATSQRLFGTSMMFGIGTRKARI 109
++ G + V +P + A + + +GR+YWE+ + S F IG +
Sbjct: 24 RMLGVDPTKVQQNPERFRDWAVVLADTPVESGRHYWEVTVKR-----SQEFRIGVADVDM 78
Query: 110 HQNAFINLIGKDEHSWGLSHKGLIFHGGKFY----NYTKPFPE-NEATRIGVLFDGIAGT 164
++ IG D SW + + K+Y + T P P + R+G+L D AG
Sbjct: 79 SRDE---CIGVDSRSWVFA-----YAQRKWYAMIASETVPVPNIGKPERVGLLLDYEAGK 130
Query: 165 LS 166
LS
Sbjct: 131 LS 132
>gnl|CDD|240479 cd12899, SPRY_PRY_TRIM76_like, PRY/SPRY domain in tripartite
motif-containing protein 76 (TRIM76)-like. This domain
is similar to the distinct PRY/SPRY subdomain found at
the C-terminus of TRIM76, a Class I TRIM protein. TRIM76
(also known as cardiomyopathy-associated protein 5 or
CMYA5 or myospryn or SPRYD2) is a muscle-specific member
of the TRIM superfamily, but lacks the RING domain. It
has been suggested that TRIM76 is involved in two
distinct processes, protein kinase A signaling and
vesicular trafficking.
Length = 176
Score = 28.6 bits (64), Expect = 2.4
Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 18/95 (18%)
Query: 81 GRYYWELATSQRLFGTSMMFGIGTRKARIHQNAFINLIGKDEHSWGLSH-------KGLI 133
G++YWE+ + T G+ R + +G + SW + H K
Sbjct: 56 GKHYWEVEVDE---HTEYRIGVAFEDTRRNG-----YLGANSTSWCMRHILTPSRHKYEF 107
Query: 134 FHGGKFYNYTKPFPENEATRIGVLFDGIAGTLSFY 168
H G + P +IG+L D LSF+
Sbjct: 108 LHNGTTPDIRITVP---PKKIGILLDYEHSKLSFF 139
>gnl|CDD|240485 cd12905, SPRY_PRY_TRIM_Bty_69_NF7, PRY/SPRY domain in tripartite
motif-containing protein 69 (TRIM69), Bloodthirsty (bty)
and NF7. This domain, consisting of the distinct
N-terminal PRY subdomain followed by the SPRY subdomain,
is found at the C-terminus of TRIM69 and TRIM proteins
NF7 and bloodthirsty (bty). TRIM69 is a novel testis E3
ubiquitin ligase that may function to ubiquitinate its
particular substrates during spermatogenesis. In humans,
TRIM69 localizes in the cytoplasm and nucleus, and
requires an intact RING finger domain to function. TRIM
protein NF7, which also contains a chromodomain (CHD) at
the N-terminus and an RFP (Ret finger protein)-like
domain at the C-terminus, is required for its
association with transcriptional units of RNA polymerase
II which is mediated by a trimeric B box. In Xenopus
oocyte, xNF7 has been identified as a nuclear
microtubule-associated protein (MAP) whose
microtubule-bundling activity, but not E3-ligase
activity, contributes to microtubule organization and
spindle integrity. Bloodthirsty (bty) is a novel gene
identified in zebrafish and has been shown to likely
play a role in in regulation of the terminal steps of
erythropoiesis.
Length = 176
Score = 28.0 bits (63), Expect = 3.7
Identities = 27/125 (21%), Positives = 49/125 (39%), Gaps = 15/125 (12%)
Query: 74 GTRQLNNGRYYWELATSQRLFGTSMMFGIGTRKARIHQNAFINLIGKDEHSWGLSHKGLI 133
G +GR+YWE+ + T + +G + I++ I L ++ W L +
Sbjct: 48 GKEGFTSGRHYWEVQVGDK---TD--WDLGVARESINRKGKITLNPENGF-WTLWLRN-- 99
Query: 134 FHGGKFYNYTKPF----PENEATRIGVLFDGIAGTLSFYKDGEYLGIAFQGLQHVQEPLY 189
G ++ P ++ ++GV D G +SFY D + + + E LY
Sbjct: 100 --GNEYKALDSPSTSLSLRSKPQKVGVFLDYEGGQVSFY-DADTMTHIYTFTDTFTEKLY 156
Query: 190 PMICS 194
P
Sbjct: 157 PYFSP 161
>gnl|CDD|182175 PRK09971, PRK09971, xanthine dehydrogenase subunit XdhB;
Provisional.
Length = 291
Score = 28.1 bits (63), Expect = 4.1
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 233 VKLPTPIRTYIEEAMVKGFLMNKE 256
V PTPIR E KG +N E
Sbjct: 219 VAAPTPIRCQHAEQTAKGAPLNLE 242
>gnl|CDD|240481 cd12901, SPRY_PRY_FSD1, Fibronectin type III and SPRY containing 1
(FSD1) domain includes PRY at the N-terminus. This
domain is part of the fibronectin type III and SPRY
domain containing 1 (FSD1) and FSD1-like (FSD1L)
proteins. These are centrosome-associated proteins that
are characterized by an N-terminal coiled-coil region
downstream of B-box (BBC) domain, a central fibronectin
type III (FN3) domain, and C-terminal repeats in
PRY/SPRY domain. The FSD1 protein associates with a
subset of microtubules and may be involved in the
stability and organization of microtubules during
cytokinesis.
Length = 203
Score = 27.5 bits (61), Expect = 6.2
Identities = 30/128 (23%), Positives = 46/128 (35%), Gaps = 28/128 (21%)
Query: 74 GTRQLNNGRYYWELATSQRLFGTSMMFGIGTRK-ARIHQNAFINLIGKDEHSW------- 125
G ++ G++YWE+ + S G+ R + Q +GK SW
Sbjct: 74 GDTPIDGGQHYWEVRAQKD--SKSFSVGVAYRSLGKFDQ------LGKTNTSWCIHVNNW 125
Query: 126 ---GLSHKGLIFHGGKFYNYTKPFPENEATRIGVLFDGIAGTLSFYKDGEYLGIAFQGLQ 182
+ K H K P P+ RIGV + G LSFY D + +
Sbjct: 126 LQNTFAAK----HNNKAKALDVPVPD----RIGVYCNYDNGFLSFY-DADTKQLLHTFKT 176
Query: 183 HVQEPLYP 190
+P+ P
Sbjct: 177 KFTQPVLP 184
>gnl|CDD|107361 cd06366, PBP1_GABAb_receptor, Ligand-binding domain of GABAb
receptors, which are metabotropic transmembrane
receptors for gamma-aminobutyric acid (GABA).
Ligand-binding domain of GABAb receptors, which are
metabotropic transmembrane receptors for
gamma-aminobutyric acid (GABA). GABA is the major
inhibitory neurotransmitter in the mammalian CNS and,
like glutamate and other transmitters, acts via both
ligand gated ion channels (GABAa receptors) and
G-protein coupled receptors (GABAb). GABAa receptors are
members of the ionotropic receptor superfamily which
includes alpha-adrenergic and glycine receptors. The
GABAb receptor is a member of a receptor superfamily
which includes the mGlu receptors. The GABAb receptor is
coupled to G alpha_i proteins, and activation causes a
decrease in calcium, an increase in potassium membrane
conductance, and inhibition of cAMP formation. The
response is thus inhibitory and leads to
hyperpolarization and decreased neurotransmitter
release, for example.
Length = 350
Score = 27.6 bits (62), Expect = 7.8
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 158 FDGIAGTLSFYKDGEYLGIAFQGLQ 182
F+G++G + F AF+ +
Sbjct: 304 FNGLSGPVQFDGGRRLASPAFEIIN 328
>gnl|CDD|240474 cd12894, SPRY_PRY_TRIM36, PRY/SPRY domain in tripartite
motif-containing protein 36 (TRIM36). This domain,
consisting of the distinct N-terminal PRY subdomain
followed by the SPRY subdomain, is found at the
C-terminus of TRIM36, a Class I TRIM protein. TRIM36
(also known as Haprin or RNF98) has a ubiquitin ligase
activity and interacts with centromere protein-H, one of
the kinetochore proteins. It has been shown that TRIM36
is potentially associated with chromosome segregation
and that an excess of TRIM36 may cause chromosomal
instability. In Xenopus laevis, TRIM36 is expressed
during early embryogenesis and plays an important role
in the arrangement of somites during their formation.
Length = 202
Score = 27.2 bits (60), Expect = 7.8
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 9/46 (19%)
Query: 137 GKFYNYTKPFPENEA--------TRIGVLFDGIAGTLSFYKDGEYL 174
GK + P ENE TRIG+ D G + FY D + +
Sbjct: 127 GKLFIPKSPHVENEPASRVLPLPTRIGICLDYDEGKVGFY-DADSM 171
>gnl|CDD|199206 cd08962, GatD, GatD subunit of archaeal Glu-tRNA amidotransferase.
GatD is involved in the alternative synthesis of
Gln-tRNA(Gln) in archaea via the transamidation of
incorrectly charged Glu-tRNA(Gln). GatD is active as a
dimer, and it provides the amino group required for this
reaction. GatD is related to bacterial L-asparaginases
(amidohydrolases), which catalyze the hydrolysis of
asparagine to aspartic acid and ammonia. This CD spans
both the L-asparaginase_like domain and an N-terminal
supplementary domain.
Length = 402
Score = 27.6 bits (62), Expect = 8.0
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 165 LSFYKDGEYLGIAFQ--GLQHVQEPLYPMI 192
+ FY D Y GI + GL HV E L P I
Sbjct: 300 IDFYVDKGYKGIVIEGTGLGHVSEDLIPSI 329
>gnl|CDD|146306 pfam03598, CdhC, CO dehydrogenase/acetyl-CoA synthase complex beta
subunit.
Length = 412
Score = 27.2 bits (61), Expect = 8.3
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 5 QVNGVLLA---FPSPTPLGLESSSMADM 29
+VNG+ + + TPLG+ S++A M
Sbjct: 291 EVNGIGIVNREYAGMTPLGMTFSTLAGM 318
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.138 0.436
Gapped
Lambda K H
0.267 0.0737 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,201,235
Number of extensions: 1230028
Number of successful extensions: 919
Number of sequences better than 10.0: 1
Number of HSP's gapped: 887
Number of HSP's successfully gapped: 62
Length of query: 256
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 161
Effective length of database: 6,723,972
Effective search space: 1082559492
Effective search space used: 1082559492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.1 bits)