RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17782
(256 letters)
>d2fnja1 b.29.1.22 (A:35-251) LD34464p {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 217
Score = 138 bits (348), Expect = 5e-41
Identities = 54/197 (27%), Positives = 89/197 (45%), Gaps = 18/197 (9%)
Query: 38 WTWDRNDKSPDTKLFGKNHRTVNFHPTWSKGAAGIRGTRQLNNGRYYWELATSQRLFGTS 97
+W+ D+S + + + T + HP ++ IRG L G + WE+ R GT
Sbjct: 24 HSWNSEDRSLNIFVKEDDKLTFHRHP-VAQSTDCIRGKVGLTKGLHIWEIYWPTRQRGTH 82
Query: 98 MMFGIGTRKARIHQNAFINLIGKDEHSWGLS-HKGLIFHGGK---------FYNYTKPFP 147
+ G+ T A +H + +L+G E SWG + ++H K + F
Sbjct: 83 AVVGVCTADAPLHSVGYQSLVGSTEQSWGWDLGRNKLYHDSKNCAGVTYPAILKNDEAFL 142
Query: 148 ENEATRIGVLFDGIAGTLSFYKDGEYLGIAFQGLQHVQEPLYPMICSTAVKTQISLEV-- 205
+ + V D GTLSF D +YLGIAF+GL+ + LYP++ + +I++
Sbjct: 143 VPD--KFLVALDMDEGTLSFIVDQQYLGIAFRGLRG--KKLYPIVSAVWGHCEITMRYIG 198
Query: 206 -ARRDFINLQDRCRSII 221
+ + L D CR I
Sbjct: 199 GLDPEPLPLMDLCRRTI 215
>d2afja1 b.29.1.22 (A:12-224) SPRY domain-containing SOCS box
protein 2 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 213
Score = 108 bits (271), Expect = 1e-29
Identities = 40/179 (22%), Positives = 69/179 (38%), Gaps = 11/179 (6%)
Query: 32 YGCDDWWTWDRNDKSPDTKLFGKNHRTVNFHPTWSKGAAGIRGTRQLNNGRYYWELATSQ 91
W+ D S + + P ++ G+RG R + G + WE++
Sbjct: 29 LVAQRHHGWNPKDCSENIDVKEGG-LCFERRP-VAQSTDGVRGKRGYSRGLHAWEISWPL 86
Query: 92 RLFGTSMMFGIGTRKARIHQNAFINLIGKDEHSWGLSHKGLIFHGGKFYNYTKPFPEN-- 149
GT + G+ T A + + + L+G + SWG + +P
Sbjct: 87 EQRGTHAVVGVATALAPLQADHYAALLGSNSESWGWDIGRGKLYHQSKGLEAPQYPAGPQ 146
Query: 150 -----EATRIGVLFDGIAGTLSFYKDGEYLGIAFQGLQHVQEPLYPMICSTAVKTQISL 203
R+ V+ D GTL + G YLG AF+GL+ LYP + + + Q+ +
Sbjct: 147 GEQLVVPERLLVVLDMEEGTLGYSIGGTYLGPAFRGLKG--RTLYPSVSAVWGQCQVRI 203
>d2iwgb1 b.29.1.22 (B:4-182) 52 kDa Ro protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 179
Score = 50.4 bits (120), Expect = 2e-08
Identities = 25/144 (17%), Positives = 49/144 (34%), Gaps = 9/144 (6%)
Query: 52 FGKNHRTVNFHPTWSKGAAGIRGTRQLNNGRYYWELATSQRLFGTSMMFGIGTRKARIHQ 111
G +++ + + G + ++G++YWE+ + +G + + +
Sbjct: 25 LGDTQQSIPGNEERFDSYPMVLGAQHFHSGKHYWEVD-----VTGKEAWDLGVCRDSVRR 79
Query: 112 NAFINLIGKDEHSWGLSHKGLIFHGGKFYNYTKPFPENEATRIGVLFDGIAGTLSFY--K 169
L K W + + Y T + ++G+ D AG +SFY
Sbjct: 80 KGHFLLSSKS-GFWTIWLWNKQKYEAGTYPQTPLHLQVPPCQVGIFLDYEAGMVSFYNIT 138
Query: 170 DGEYLGIAFQGLQHVQEPLYPMIC 193
D L +F PL P
Sbjct: 139 DHGSLIYSFSEC-AFTGPLRPFFS 161
>d2fbea1 b.29.1.22 (A:1-188) Similar to Ret finger protein-like 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 188
Score = 49.2 bits (117), Expect = 6e-08
Identities = 31/144 (21%), Positives = 56/144 (38%), Gaps = 10/144 (6%)
Query: 52 FGKNHRTVNFHPTWSKGAAGIRGTRQLNNGRYYWELATSQRLFGTSMMFGIGTRKARIHQ 111
G + A + GT + +GR+YWE+ GTS ++ +G K +++
Sbjct: 34 SGDLSQNRKEQAERFDTALCVLGTPRFTSGRHYWEVD-----VGTSQVWDVGVCKESVNR 88
Query: 112 NAFINLIGKDEHSWGLSHKGLIFHGGKFYNYTKPFPENEATRIGVLFDGIAGTLSFY--K 169
I L + +G +F T + + R+G+ D +++FY
Sbjct: 89 QGKIELSSEHGFLTVGCREGKVFAASTV-PMTPLWVSPQLHRVGIFLDVGMRSIAFYNVS 147
Query: 170 DGEYLGIAFQGLQHVQEPLYPMIC 193
DG ++ F + V EP P
Sbjct: 148 DGCHI-YTFIEI-PVCEPWRPFFA 169
>d2izva1 a.271.1.1 (A:386-429) Suppressor of cytokine signaling 4,
SOCS-4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 44
Score = 33.1 bits (76), Expect = 0.002
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 213 LQDRCRSIIIKTMNQADLDLVKLPTPIRTYIEE 245
LQ CR++I +D + +P+ ++ Y++E
Sbjct: 4 LQHICRTVICNCTTYDGIDALPIPSSMKLYLKE 36
>d2c9wa1 a.271.1.1 (A:149-198) Suppressor of cytokine signaling 2,
SOCS-2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 50
Score = 30.8 bits (70), Expect = 0.016
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 207 RRDFINLQDRCRSIIIKTMNQADLDLVKLPTPIRTYIEE 245
+LQ CR I K + LPT ++ Y+EE
Sbjct: 9 YTSAPSLQHLCRLTINKCTGAI--WGLPLPTRLKDYLEE 45
>d1jmxg_ a.137.9.1 (G:) Quinohemoprotein amine dehydrogenase C
chain {Pseudomonas putida [TaxId: 303]}
Length = 77
Score = 26.4 bits (58), Expect = 1.0
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 15/41 (36%)
Query: 32 YGCDD--WWTWDRNDKSPDTKLFGKNHRTVNFHPTWSKGAA 70
YGC D WW + PD ++ + W+ A+
Sbjct: 33 YGCSDPCWWP----AQVPDM---------MSTYQDWNAQAS 60
>d1pbyc_ a.137.9.1 (C:) Quinohemoprotein amine dehydrogenase C
chain {Paracoccus denitrificans [TaxId: 266]}
Length = 79
Score = 26.4 bits (58), Expect = 1.2
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 15/41 (36%)
Query: 32 YGCDD--WWTWDRNDKSPDTKLFGKNHRTVNFHPTWSKGAA 70
YGC D WW + DT +N +P WS GA
Sbjct: 35 YGCADPCWWP----AQVADT---------LNTYPNWSAGAD 62
>d1oaoc_ e.26.1.3 (C:) Bifunctional carbon monoxide
dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS)
subunit {Moorella thermoacetica [TaxId: 1525]}
Length = 729
Score = 27.0 bits (60), Expect = 2.3
Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 5 QVNGVLLA---FPSPTPLGLESSSMADM 29
+ NG+++ TP G+ S++A M
Sbjct: 607 ECNGIMITTRDHAGMTPSGMTFSTLAGM 634
>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP)
carboxykinase (ATP-oxaloacetate carboxy-lyase)
{Escherichia coli [TaxId: 562]}
Length = 313
Score = 26.1 bits (57), Expect = 4.9
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 96 TSMMFGI-GTRKARIHQNAFINLIGKDEHSWGLSHKGLIFHGGKFYNYTKPFPEN--EAT 152
++ FG+ GT K + + LIG DEH W G+ G Y T +
Sbjct: 16 VAVFFGLSGTGKTTLSTDPKRRLIGDDEHGW--DDDGVFNFEGGCYAKTIKLSKEAEPEI 73
Query: 153 RIGVLFDGIAGTLSFYKDGE 172
+ D + ++ +DG
Sbjct: 74 YNAIRRDALLENVTVREDGT 93
>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 150
Score = 25.2 bits (55), Expect = 6.1
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 187 PLYPMICSTAVKTQISLEVARRDFINLQDRCRSIIIKTMNQADL 230
P YP +C+T T+ + +V ++F+ I + A+L
Sbjct: 104 PAYPSMCATHNITESTKKVILQEFVRGVQITNDIFSNKKSWANL 147
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.436
Gapped
Lambda K H
0.267 0.0465 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,000,449
Number of extensions: 45332
Number of successful extensions: 124
Number of sequences better than 10.0: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 14
Length of query: 256
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 173
Effective length of database: 1,268,006
Effective search space: 219365038
Effective search space used: 219365038
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.5 bits)