RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17785
(180 letters)
>gnl|CDD|215689 pfam00067, p450, Cytochrome P450. Cytochrome P450s are
haem-thiolate proteins involved in the oxidative
degradation of various compounds. They are particularly
well known for their role in the degradation of
environmental toxins and mutagens. They can be divided
into 4 classes, according to the method by which
electrons from NAD(P)H are delivered to the catalytic
site. Sequence conservation is relatively low within the
family - there are only 3 absolutely conserved residues
- but their general topography and structural fold are
highly conserved. The conserved core is composed of a
coil termed the 'meander', a four-helix bundle, helices
J and K, and two sets of beta-sheets. These constitute
the haem-binding loop (with an absolutely conserved
cysteine that serves as the 5th ligand for the haem
iron), the proton-transfer groove and the absolutely
conserved EXXR motif in helix K. While prokaryotic P450s
are soluble proteins, most eukaryotic P450s are
associated with microsomal membranes. their general
enzymatic function is to catalyze regiospecific and
stereospecific oxidation of non-activated hydrocarbons
at physiological temperatures.
Length = 461
Score = 107 bits (270), Expect = 8e-28
Identities = 48/132 (36%), Positives = 74/132 (56%), Gaps = 8/132 (6%)
Query: 52 TGHSDHRDSTLDDIKLADLQEELGEAHLDEL----GLFNIAGIETLTTAFSAVIFLLSMH 107
+ RD LD + LA +E+ + +EL AG +T ++ S ++ L+ H
Sbjct: 233 SAKKSPRD-FLDALLLAKEEEDGSKLTDEELRATVLELFFAGTDTTSSTLSWALYELAKH 291
Query: 108 PEVQAKVYDELISIIGEDFHKKPSLSELENLKYLDMVIKESLRLYPPAYVA-PRRATEDI 166
PEVQ K+ +E+ +IG + P+ +L+N+ YLD VIKE+LRL+P + PR T+D
Sbjct: 292 PEVQEKLREEIDEVIG--DKRSPTYDDLQNMPYLDAVIKETLRLHPVVPLLLPREVTKDT 349
Query: 167 HIGEFTIPKGTL 178
I + IPKGTL
Sbjct: 350 VIPGYLIPKGTL 361
>gnl|CDD|215164 PLN02290, PLN02290, cytokinin trans-hydroxylase.
Length = 516
Score = 85.3 bits (211), Expect = 1e-19
Identities = 43/98 (43%), Positives = 56/98 (57%), Gaps = 3/98 (3%)
Query: 79 LDELGLFNIAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKKPSLSELENL 138
+DE F AG ET + + LL+ +P Q KV E+ + G + PS+ L L
Sbjct: 318 MDECKTFFFAGHETTALLLTWTLMLLASNPTWQDKVRAEVAEVCGGE---TPSVDHLSKL 374
Query: 139 KYLDMVIKESLRLYPPAYVAPRRATEDIHIGEFTIPKG 176
L+MVI ESLRLYPPA + PR A EDI +G+ IPKG
Sbjct: 375 TLLNMVINESLRLYPPATLLPRMAFEDIKLGDLHIPKG 412
>gnl|CDD|225035 COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis,
transport, and catabolism].
Length = 411
Score = 76.3 bits (188), Expect = 9e-17
Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 18/100 (18%)
Query: 79 LDELGLFNIAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKKPSLSELENL 138
DEL +AG ET A + ++ L HP+ AK+ E +
Sbjct: 238 RDELITLLVAGHETTANALAWALYALLRHPDQLAKLRAEP------------------DR 279
Query: 139 KYLDMVIKESLRLYPPAYVAPRRATEDIHIGEFTIPKGTL 178
L+ V++E+LRLYPP +A R ATED+ +G + IP GT+
Sbjct: 280 PLLEAVVEETLRLYPPVPLARRVATEDVELGGYRIPAGTV 319
>gnl|CDD|215086 PLN00168, PLN00168, Cytochrome P450; Provisional.
Length = 519
Score = 71.5 bits (175), Expect = 6e-15
Identities = 46/132 (34%), Positives = 67/132 (50%), Gaps = 26/132 (19%)
Query: 61 TLDDIKL-ADLQEELGEAHLDELGL----FNIAGIETLTTAFSAVIFLLSMHPEVQAKVY 115
TL DI+L D L + DE+ F AG +T +TA ++ L +P +Q+K++
Sbjct: 288 TLLDIRLPEDGDRALTD---DEIVNLCSEFLNAGTDTTSTALQWIMAELVKNPSIQSKLH 344
Query: 116 DELISIIG--------EDFHKKPSLSELENLKYLDMVIKESLRLYPPA-YVAPRRATEDI 166
DE+ + G ED HK P YL V+ E LR +PPA +V P +A ED+
Sbjct: 345 DEIKAKTGDDQEEVSEEDVHKMP---------YLKAVVLEGLRKHPPAHFVLPHKAAEDM 395
Query: 167 HIGEFTIPKGTL 178
+G + IPKG
Sbjct: 396 EVGGYLIPKGAT 407
>gnl|CDD|215393 PLN02738, PLN02738, carotene beta-ring hydroxylase.
Length = 633
Score = 71.1 bits (174), Expect = 8e-15
Identities = 38/97 (39%), Positives = 57/97 (58%), Gaps = 3/97 (3%)
Query: 80 DELGLFNIAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKKPSLSELENLK 139
D+L IAG ET + +LLS P V AK+ +E+ S++G+ F P++ +++ LK
Sbjct: 394 DDLMTMLIAGHETSAAVLTWTFYLLSKEPSVVAKLQEEVDSVLGDRF---PTIEDMKKLK 450
Query: 140 YLDMVIKESLRLYPPAYVAPRRATEDIHIGEFTIPKG 176
Y VI ESLRLYP V RR+ E+ +G + I +G
Sbjct: 451 YTTRVINESLRLYPQPPVLIRRSLENDMLGGYPIKRG 487
>gnl|CDD|215371 PLN02687, PLN02687, flavonoid 3'-monooxygenase.
Length = 517
Score = 64.1 bits (156), Expect = 2e-12
Identities = 37/97 (38%), Positives = 54/97 (55%), Gaps = 4/97 (4%)
Query: 82 LGLFNIAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKKPSLSELENLKYL 141
L LF AG +T ++ I L HP++ K +EL +++G D + S S+L L YL
Sbjct: 303 LNLF-TAGTDTTSSTVEWAIAELIRHPDILKKAQEELDAVVGRD--RLVSESDLPQLTYL 359
Query: 142 DMVIKESLRLYPPAYVA-PRRATEDIHIGEFTIPKGT 177
VIKE+ RL+P ++ PR A E+ I + IPKG
Sbjct: 360 QAVIKETFRLHPSTPLSLPRMAAEECEINGYHIPKGA 396
>gnl|CDD|178524 PLN02936, PLN02936, epsilon-ring hydroxylase.
Length = 489
Score = 62.9 bits (153), Expect = 5e-12
Identities = 37/108 (34%), Positives = 58/108 (53%), Gaps = 5/108 (4%)
Query: 71 QEELGEAHL-DELGLFNIAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKK 129
+EE+ L D+L +AG ET + + ++LLS +PE K +EL ++ +
Sbjct: 271 REEVSSVQLRDDLLSMLVAGHETTGSVLTWTLYLLSKNPEALRKAQEELDRVLQG---RP 327
Query: 130 PSLSELENLKYLDMVIKESLRLYPPAYVAPRRA-TEDIHIGEFTIPKG 176
P+ +++ LKYL I ES+RLYP V RRA ED+ G + + G
Sbjct: 328 PTYEDIKELKYLTRCINESMRLYPHPPVLIRRAQVEDVLPGGYKVNAG 375
>gnl|CDD|173595 PTZ00404, PTZ00404, cytochrome P450; Provisional.
Length = 482
Score = 61.3 bits (149), Expect = 2e-11
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 4/94 (4%)
Query: 85 FNIAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKKPSLSELENLKYLDMV 144
F +AG++T T+ ++ +L +PE+Q K Y+E+ S + K LS+ ++ Y +
Sbjct: 291 FFLAGVDTSATSLEWMVLMLCNYPEIQEKAYNEIKSTVNG--RNKVLLSDRQSTPYTVAI 348
Query: 145 IKESLRLYPPAYVA-PRRATEDIHIG-EFTIPKG 176
IKE+LR P + PR + DI IG IPK
Sbjct: 349 IKETLRYKPVSPFGLPRSTSNDIIIGGGHFIPKD 382
>gnl|CDD|215354 PLN02655, PLN02655, ent-kaurene oxidase.
Length = 466
Score = 60.1 bits (146), Expect = 4e-11
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 92 TLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKKPSLSELENLKYLDMVIKESLRL 151
TL T A ++ L+ +P+ Q ++Y E+ + G+ ++ + +L NL YL+ V E+LR
Sbjct: 278 TLVTTEWA-MYELAKNPDKQERLYREIREVCGD---ERVTEEDLPNLPYLNAVFHETLRK 333
Query: 152 YPPAYVAPRR-ATEDIHIGEFTIPKGT 177
Y P + P R ED +G + IP GT
Sbjct: 334 YSPVPLLPPRFVHEDTTLGGYDIPAGT 360
>gnl|CDD|215235 PLN02426, PLN02426, cytochrome P450, family 94, subfamily C
protein.
Length = 502
Score = 60.1 bits (146), Expect = 4e-11
Identities = 24/70 (34%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 85 FNIAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKKPSLSELENLKYLDMV 144
F +AG +T+ +A ++ +LLS HPEV + + +E ++G + + S E++ + YL
Sbjct: 301 FLLAGRDTVASALTSFFWLLSKHPEVASAIREEADRVMGPNQ-EAASFEEMKEMHYLHAA 359
Query: 145 IKESLRLYPP 154
+ ES+RL+PP
Sbjct: 360 LYESMRLFPP 369
>gnl|CDD|215221 PLN02394, PLN02394, trans-cinnamate 4-monooxygenase.
Length = 503
Score = 59.0 bits (143), Expect = 1e-10
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 86 NIAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKKPSLSELENLKYLDMVI 145
N+A IET + I L HPE+Q K+ DEL +++G + + + L YL V+
Sbjct: 302 NVAAIETTLWSIEWGIAELVNHPEIQKKLRDELDTVLGPG--NQVTEPDTHKLPYLQAVV 359
Query: 146 KESLRLYPP-AYVAPRRATEDIHIGEFTIPKGT 177
KE+LRL+ + P ED +G + IP +
Sbjct: 360 KETLRLHMAIPLLVPHMNLEDAKLGGYDIPAES 392
>gnl|CDD|215583 PLN03112, PLN03112, cytochrome P450 family protein; Provisional.
Length = 514
Score = 56.8 bits (137), Expect = 6e-10
Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 17/122 (13%)
Query: 67 LADLQEELGEAHLDE-----LGLFNIAGIETLTTAFSAVIFLLSM-----HPEVQAKVYD 116
L L E G+ H+D+ L IA T SAV +M +P V K+ +
Sbjct: 280 LLSLPGENGKEHMDDVEIKALMQDMIAA----ATDTSAVTNEWAMAEVIKNPRVLRKIQE 335
Query: 117 ELISIIGEDFHKKPSLSELENLKYLDMVIKESLRLYPPA-YVAPRRATEDIHIGEFTIPK 175
EL S++G + + S+L +L YL V++E+ R++P ++ P + I + IP
Sbjct: 336 ELDSVVGRN--RMVQESDLVHLNYLRCVVRETFRMHPAGPFLIPHESLRATTINGYYIPA 393
Query: 176 GT 177
T
Sbjct: 394 KT 395
>gnl|CDD|215171 PLN02302, PLN02302, ent-kaurenoic acid oxidase.
Length = 490
Score = 54.3 bits (131), Expect = 4e-09
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 11/84 (13%)
Query: 99 AVIFLLSMHPEVQAKVYDELISIIGEDFHKKP------SLSELENLKYLDMVIKESLRLY 152
A IFL HPEV K E I K+P +L ++ ++YL VI E+LRL
Sbjct: 310 ATIFLQE-HPEVLQKAKAEQEEIA----KKRPPGQKGLTLKDVRKMEYLSQVIDETLRLI 364
Query: 153 PPAYVAPRRATEDIHIGEFTIPKG 176
+ R A D+ + +TIPKG
Sbjct: 365 NISLTVFREAKTDVEVNGYTIPKG 388
>gnl|CDD|165828 PLN02183, PLN02183, ferulate 5-hydroxylase.
Length = 516
Score = 54.1 bits (130), Expect = 6e-09
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 89 GIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKKPSLSELENLKYLDMVIKES 148
G ET+ +A + L PE +V EL ++G +++ S+LE L YL +KE+
Sbjct: 316 GTETVASAIEWAMAELMKSPEDLKRVQQELADVVG--LNRRVEESDLEKLTYLKCTLKET 373
Query: 149 LRLYPPAYVAPRRATEDIHIGEFTIPKGT 177
LRL+PP + ED + + IPK +
Sbjct: 374 LRLHPPIPLLLHETAEDAEVAGYFIPKRS 402
>gnl|CDD|178592 PLN03018, PLN03018, homomethionine N-hydroxylase.
Length = 534
Score = 50.0 bits (119), Expect = 1e-07
Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 85 FNIAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKKPSLSELENLKYLDMV 144
F IA I+ + + +PE+ K EL ++G+D + S++ NL YL
Sbjct: 322 FCIAAIDNPANNMEWTLGEMLKNPEILRKALKELDEVVGKD--RLVQESDIPNLNYLKAC 379
Query: 145 IKESLRLYPPA-YVAPRRATEDIHIGEFTIPKGT 177
+E+ R++P A YV P A +D +G + IPKG+
Sbjct: 380 CRETFRIHPSAHYVPPHVARQDTTLGGYFIPKGS 413
>gnl|CDD|215627 PLN03195, PLN03195, fatty acid omega-hydroxylase; Provisional.
Length = 516
Score = 49.8 bits (119), Expect = 2e-07
Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 18/99 (18%)
Query: 85 FNIAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGE-----DFHKKPSLSE----- 134
F IAG +T T S ++++ M+P V K+Y EL ++ E D S ++
Sbjct: 300 FVIAGRDTTATTLSWFVYMIMMNPHVAEKLYSELKALEKERAKEEDPEDSQSFNQRVTQF 359
Query: 135 --------LENLKYLDMVIKESLRLYPPAYVAPRRATED 165
L L+YL VI E+LRLYP P+ ED
Sbjct: 360 AGLLTYDSLGKLQYLHAVITETLRLYPAVPQDPKGILED 398
>gnl|CDD|178773 PLN03234, PLN03234, cytochrome P450 83B1; Provisional.
Length = 499
Score = 46.6 bits (110), Expect = 2e-06
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 87 IAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKKPSLSELENLKYLDMVIK 146
+ G +T + L +PE K DE+ ++IG+ + S ++ NL YL VIK
Sbjct: 298 VPGTDTAAAVVVWAMTYLIKYPEAMKKAQDEVRNVIGDKGYV--SEEDIPNLPYLKAVIK 355
Query: 147 ESLRLYPPAYVAPRRAT-EDIHIGEFTIPKGTL 178
ESLRL P + R T D IG + IP T+
Sbjct: 356 ESLRLEPVIPILLHRETIADAKIGGYDIPAKTI 388
>gnl|CDD|177826 PLN02169, PLN02169, fatty acid (omega-1)-hydroxylase/midchain
alkane hydroxylase.
Length = 500
Score = 45.8 bits (108), Expect = 4e-06
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 8/68 (11%)
Query: 87 IAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKKPSLSELENLKYLDMVIK 146
+AG +T ++A + +LLS HP+V AK+ E+ + K +LE L YL +
Sbjct: 311 LAGRDTTSSALTWFFWLLSKHPQVMAKIRHEI--------NTKFDNEDLEKLVYLHAALS 362
Query: 147 ESLRLYPP 154
ES+RLYPP
Sbjct: 363 ESMRLYPP 370
>gnl|CDD|178550 PLN02966, PLN02966, cytochrome P450 83A1.
Length = 502
Score = 39.3 bits (91), Expect = 5e-04
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 87 IAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKKPSLSELENLKYLDMVIK 146
+AG +T A + L +P+V K E+ + E + +++NL Y ++K
Sbjct: 299 VAGTDTAAAAVVWGMTYLMKYPQVLKKAQAEVREYMKEKGSTFVTEDDVKNLPYFRALVK 358
Query: 147 ESLRLYPP-AYVAPRRATEDIHIGEFTIPKGT 177
E+LR+ P + PR +D I + IP GT
Sbjct: 359 ETLRIEPVIPLLIPRACIQDTKIAGYDIPAGT 390
>gnl|CDD|177725 PLN00110, PLN00110, flavonoid 3',5'-hydroxylase (F3'5'H);
Provisional.
Length = 504
Score = 39.5 bits (92), Expect = 5e-04
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 82 LGLFNIAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKKPSLSELENLKYL 141
L LF AG +T ++ + + +P + + ++E+ +IG + ++ S+L L YL
Sbjct: 295 LNLF-TAGTDTSSSVIEWSLAEMLKNPSILKRAHEEMDQVIGRN--RRLVESDLPKLPYL 351
Query: 142 DMVIKESLRLYPPAYV-APRRATEDIHIGEFTIPKGT 177
+ KES R +P + PR +T+ + + IPK T
Sbjct: 352 QAICKESFRKHPSTPLNLPRVSTQACEVNGYYIPKNT 388
>gnl|CDD|166612 PLN02971, PLN02971, tryptophan N-hydroxylase.
Length = 543
Score = 38.9 bits (90), Expect = 8e-04
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 108 PEVQAKVYDELISIIGEDFHKKPSLSELENLKYLDMVIKESLRLYP-PAYVAPRRATEDI 166
PE+ K +E+ ++G++ + S++ L Y+ +I+E+ RL+P A+ P A D
Sbjct: 358 PEILHKAMEEIDRVVGKE--RFVQESDIPKLNYVKAIIREAFRLHPVAAFNLPHVALSDT 415
Query: 167 HIGEFTIPKGT 177
+ + IPKG+
Sbjct: 416 TVAGYHIPKGS 426
>gnl|CDD|166628 PLN02987, PLN02987, Cytochrome P450, family 90, subfamily A.
Length = 472
Score = 38.8 bits (90), Expect = 0.001
Identities = 23/93 (24%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 87 IAGIETLTTAFSAVIFLLSMHPEVQAKV---YDELISIIGEDFHKKPSLSELENLKYLDM 143
+AG ET +T + + L+ P A++ ++++ ++ + + + S+ +++ +
Sbjct: 277 VAGYETTSTIMTLAVKFLTETPLALAQLKEEHEKIRAMKSDSYSLE--WSDYKSMPFTQC 334
Query: 144 VIKESLRLYPPAYVAPRRATEDIHIGEFTIPKG 176
V+ E+LR+ RRA DI + +TIPKG
Sbjct: 335 VVNETLRVANIIGGIFRRAMTDIEVKGYTIPKG 367
>gnl|CDD|178373 PLN02774, PLN02774, brassinosteroid-6-oxidase.
Length = 463
Score = 33.6 bits (77), Expect = 0.041
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 9/94 (9%)
Query: 88 AGIETL-TTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKKP----SLSELENLKYLD 142
+G ET+ TT+ AV +L HP+ ++ E ++I K+P ++ +++++
Sbjct: 275 SGYETVSTTSMMAVKYLHD-HPKALQELRKEHLAIRER---KRPEDPIDWNDYKSMRFTR 330
Query: 143 MVIKESLRLYPPAYVAPRRATEDIHIGEFTIPKG 176
VI E+ RL R+ T+D+ + + IPKG
Sbjct: 331 AVIFETSRLATIVNGVLRKTTQDMELNGYVIPKG 364
>gnl|CDD|215276 PLN02500, PLN02500, cytochrome P450 90B1.
Length = 490
Score = 33.3 bits (76), Expect = 0.050
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 88 AGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKKPSLSELENLKYLDM---- 143
AG ET + A + IF L P+ ++ +E + I K+ SEL Y M
Sbjct: 290 AGHETSSVAIALAIFFLQGCPKAVQELREEHLEI--ARAKKQSGESELNWEDYKKMEFTQ 347
Query: 144 -VIKESLRLYPPAYVAPRRATEDIHIGEFTIPKG 176
VI E+LRL R+A +D+ + IP G
Sbjct: 348 CVINETLRLGNVVRFLHRKALKDVRYKGYDIPSG 381
>gnl|CDD|133025 cd04182, GT_2_like_f, GT_2_like_f is a subfamily of the
glycosyltransferase family 2 (GT-2) with unknown
function. GT-2 includes diverse families of
glycosyltransferases with a common GT-A type structural
fold, which has two tightly associated beta/alpha/beta
domains that tend to form a continuous central sheet of
at least eight beta-strands. These are enzymes that
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. Glycosyltransferases have been
classified into more than 90 distinct sequence based
families.
Length = 186
Score = 30.6 bits (70), Expect = 0.26
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 88 AGIETLTTAFSAVIFLLSMHPEVQAKVYDELI 119
AG+E L AV+ LL+ P V A+ LI
Sbjct: 82 AGLEALPADADAVLILLADQPLVTAETLRALI 113
>gnl|CDD|233278 TIGR01123, ilvE_II, branched-chain amino acid aminotransferase,
group II. Among the class IV aminotransferases are two
phylogenetically separable groups of branched-chain
amino acid aminotransferase (IlvE). The last common
ancestor of the two lineages appears also to have given
rise to a family of D-amino acid aminotransferases
(DAAT). This model represents the IlvE family less
similar to the DAAT family [Amino acid biosynthesis,
Pyruvate family].
Length = 313
Score = 30.5 bits (69), Expect = 0.46
Identities = 29/111 (26%), Positives = 38/111 (34%), Gaps = 29/111 (26%)
Query: 40 TVTKMGMVNFF---------VTGHSDH------RDSTLDDIKLADLQEELGEAHLDELGL 84
+ ++G +NFF S RDS L K ++ E +DEL
Sbjct: 188 YIEEVGAMNFFFITGDGELVTPPLSGSILPGITRDSLLQLAKDLGMEVEERRIDIDELKA 247
Query: 85 FNIAGIETLTTAFSAVI--------------FLLSMHPEVQAKVYDELISI 121
F AG E +AVI F EV +YDEL I
Sbjct: 248 FVEAGEEVFACGTAAVITPVGEIQHGGKEVVFASGQPGEVTKALYDELTDI 298
>gnl|CDD|240359 PTZ00324, PTZ00324, glutamate dehydrogenase 2; Provisional.
Length = 1002
Score = 29.0 bits (65), Expect = 1.8
Identities = 36/155 (23%), Positives = 59/155 (38%), Gaps = 16/155 (10%)
Query: 12 RESIKSVLTQIKCLERFTAFQSKKTILETVTK-MGMVNFFVTG-HSDHRD--STLDDIKL 67
R S ++ + F S +E + + + FF+ G +D S D L
Sbjct: 240 RYYTASFFSRFGEIVTFHGAYSMSKYVEPFSNGVQVYTFFIRGLTADDNPDLSIEDRASL 299
Query: 68 ADLQEELGEAHLDELGLFNIAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFH 127
L L + L L + E A +AVIF P Y L +++
Sbjct: 300 IRLLYILPFSSLTRLHEERVLSCEETAYADAAVIFAFHFTPSPTTDDYRHLEALL----A 355
Query: 128 KKPS-LSELENLK-------YLDMVIKESLRLYPP 154
K+P+ +S L NL+ + + I E++ LYP
Sbjct: 356 KEPNGVSRLNNLRTRLTQEVFSERYIGEAIALYPE 390
>gnl|CDD|131323 TIGR02270, TIGR02270, conserved hypothetical protein. Members are
found in Myxococcus xanthus (six members), Geobacter
sulfurreducens, and Pseudomonas aeruginosa; a short
protein homologous to the N-terminal region is found in
Mesorhizobium loti. All sequence are from
Proteobacteria. The function is unknown [Hypothetical
proteins, Conserved].
Length = 410
Score = 28.7 bits (64), Expect = 1.9
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 13/61 (21%)
Query: 59 DSTLDDIKLADLQEELGEAHLDELGLFNIAGIETLTTA----------FSAVIFLLSMHP 108
D L+D LA+L+E L AH+D L L A E L +A A + LL+
Sbjct: 28 DYVLED--LAELEERL-LAHVDGLVLAGKAATELLVSALAEADEPGRVACAALALLAQED 84
Query: 109 E 109
Sbjct: 85 A 85
>gnl|CDD|227927 COG5640, COG5640, Secreted trypsin-like serine protease
[Posttranslational modification, protein turnover,
chaperones].
Length = 413
Score = 28.7 bits (64), Expect = 1.9
Identities = 12/52 (23%), Positives = 19/52 (36%)
Query: 25 LERFTAFQSKKTILETVTKMGMVNFFVTGHSDHRDSTLDDIKLADLQEELGE 76
+ F A + + TV+ M F VT SD S+ L ++
Sbjct: 142 ITSFDASDTFLNSVTTVSPMTNGTFGVTTPSDVPRSSPKGTILHEVAVLFVP 193
>gnl|CDD|177847 PLN02196, PLN02196, abscisic acid 8'-hydroxylase.
Length = 463
Score = 28.4 bits (63), Expect = 2.2
Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Query: 86 NIAGI-----ETLTTAFSAVIFLLSMHPEVQAKVYDELISII-GEDFHKKPSLSELENLK 139
NI G+ +T + + ++ L+ +P V V +E ++I ++ + + + + +
Sbjct: 268 NIIGVIFAARDTTASVLTWILKYLAENPSVLEAVTEEQMAIRKDKEEGESLTWEDTKKMP 327
Query: 140 YLDMVIKESLRLYPPAYVAPRRATEDIHIGEFTIPKG 176
VI+E+LR+ R A ED+ + IPKG
Sbjct: 328 LTSRVIQETLRVASILSFTFREAVEDVEYEGYLIPKG 364
>gnl|CDD|143430 cd07112, ALDH_GABALDH-PuuC, Escherichia coli NADP+-dependent
gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase
PuuC-like. NADP+-dependent,
gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase
(GABALDH) PuuC of Escherichia coli which catalyzes the
conversion of putrescine to 4-aminobutanoate and other
similar sequences are present in this CD.
Length = 462
Score = 28.0 bits (63), Expect = 3.1
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 15/69 (21%)
Query: 57 HRDSTLDDIKLADLQEELGEAHLDELGLFN-------IAGIETLTTAFSAVIFLLSMHPE 109
R + L ++LADL E AH DEL L I+ + L + + E
Sbjct: 49 ERKAVL--LRLADLIE----AHRDELALLETLDMGKPIS--DALAVDVPSAANTFRWYAE 100
Query: 110 VQAKVYDEL 118
KVY E+
Sbjct: 101 AIDKVYGEV 109
>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED.
Length = 590
Score = 27.7 bits (62), Expect = 3.5
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 7 IFSLFRESIKSVLTQIKCLERFTAFQSKKTILETVT---KMGMVN 48
IF+ ES++SVL++I+ L T +++ I+ + GMVN
Sbjct: 429 IFNESDESLRSVLSEIR-LNLRTGESTRRPIISGEQVNLEAGMVN 472
>gnl|CDD|176103 cd08411, PBP2_OxyR, The C-terminal substrate-binding domain of the
LysR-type transcriptional regulator OxyR, a member of
the type 2 periplasmic binding fold protein superfamily.
OxyR senses hydrogen peroxide and is activated through
the formation of an intramolecular disulfide bond. The
OxyR activation induces the transcription of genes
necessary for the bacterial defense against oxidative
stress. The OxyR of LysR-type transcriptional regulator
family is composed of two functional domains joined by a
linker helix involved in oligomerization: an N-terminal
HTH (helix-turn-helix) domain, which is responsible for
the DNA-binding specificity, and a C-terminal
substrate-binding domain, which is structurally
homologous to the type 2 periplasmic binding proteins.
As also observed in the periplasmic binding proteins,
the C-terminal domain of the bacterial transcriptional
repressor undergoes a conformational change upon
substrate binding which in turn changes the DNA binding
affinity of the repressor. The C-terminal domain also
contains the redox-active cysteines that mediate the
redox-dependent conformational switch. Thus, the
interaction between the OxyR-tetramer and DNA is notably
different between the oxidized and reduced forms. The
structural topology of this substrate-binding domain is
most similar to that of the type 2 periplasmic binding
proteins (PBP2), which are responsible for the uptake of
a variety of substrates such as phosphate, sulfate,
polysaccharides, lysine/arginine/ornithine, and
histidine. The PBP2 bind their ligand in the cleft
between these domains in a manner resembling a Venus
flytrap. After binding their specific ligand with high
affinity, they can interact with a cognate membrane
transport complex comprised of two integral membrane
domains and two cytoplasmically located ATPase domains.
This interaction triggers the ligand translocation
across the cytoplasmic membrane energized by ATP
hydrolysis.
Length = 200
Score = 26.7 bits (60), Expect = 5.2
Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 4/34 (11%)
Query: 49 FFVTGHSDHRDSTLDDIKLADLQEE----LGEAH 78
F + DH + + DL E L E H
Sbjct: 75 FLLAVPKDHPLAKRKSVTPEDLAGERLLLLEEGH 108
>gnl|CDD|221611 pfam12508, DUF3714, Protein of unknown function (DUF3714). This
domain family is found in bacteria, and is approximately
200 amino acids in length.
Length = 200
Score = 26.8 bits (60), Expect = 6.0
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 161 RATEDIHIGEFTIPKGTL 178
R EDI +G IPKGTL
Sbjct: 74 RLLEDITVGGTVIPKGTL 91
>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated.
Length = 484
Score = 27.2 bits (61), Expect = 6.1
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 4/28 (14%)
Query: 141 LDMVIKESLRLYPPAYVAP-RRATEDIH 167
LD+VI+ L L+ YV+ +R ED+H
Sbjct: 411 LDVVIRYKLPLH---YVSNGQRVPEDLH 435
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.138 0.386
Gapped
Lambda K H
0.267 0.0770 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,194,226
Number of extensions: 860124
Number of successful extensions: 896
Number of sequences better than 10.0: 1
Number of HSP's gapped: 870
Number of HSP's successfully gapped: 53
Length of query: 180
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 89
Effective length of database: 6,901,388
Effective search space: 614223532
Effective search space used: 614223532
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.3 bits)