RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17785
(180 letters)
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide,
monooxygenase, metab enzyme, oxidoreductase, heme,
cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo
sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A*
Length = 456
Score = 123 bits (311), Expect = 7e-34
Identities = 35/98 (35%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 80 DELGLFNIAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKKPSLSELENLK 139
D F IAG ET + + LS PE+ A++ E+ +IG + +L L+
Sbjct: 246 DNFVTFFIAGHETSANHLAFTVMELSRQPEIVARLQAEVDEVIGSK--RYLDFEDLGRLQ 303
Query: 140 YLDMVIKESLRLYPPAYVAPRRATEDIHIGEFTIPKGT 177
YL V+KESLRLYPPA+ R E+ I +P T
Sbjct: 304 YLSQVLKESLRLYPPAWGTFRLLEEETLIDGVRVPGNT 341
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo
sapiens} PDB: 3eqm_A* 3s7s_A*
Length = 503
Score = 123 bits (310), Expect = 1e-33
Identities = 30/126 (23%), Positives = 64/126 (50%), Gaps = 4/126 (3%)
Query: 53 GHSDHRDSTLDDIKLADLQEELGEAHL-DELGLFNIAGIETLTTAFSAVIFLLSMHPEVQ 111
+ ++ LA+ + +L ++ + IA +T++ + ++FL++ HP V+
Sbjct: 270 EKLEECMDFATELILAEKRGDLTRENVNQCILEMLIAAPDTMSVSLFFMLFLIAKHPNVE 329
Query: 112 AKVYDELISIIGEDFHKKPSLSELENLKYLDMVIKESLRLYPPAYVAPRRATEDIHIGEF 171
+ E+ ++IGE + + +++ LK ++ I ES+R P + R+A ED I +
Sbjct: 330 EAIIKEIQTVIGE---RDIKIDDIQKLKVMENFIYESMRYQPVVDLVMRKALEDDVIDGY 386
Query: 172 TIPKGT 177
+ KGT
Sbjct: 387 PVKKGT 392
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1,
molecular mechanism, heme, iron, metal-binding,
monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor
A3} PDB: 3el3_A*
Length = 467
Score = 121 bits (305), Expect = 5e-33
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Query: 80 DELGLFNIAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKKPSLSELENLK 139
D++ G ET+ + ++ L+ HPE ++ DE+ ++ G + ++ L+
Sbjct: 266 DQVVAILTPGSETIASTIMWLLQALADHPEHADRIRDEVEAVTGGR---PVAFEDVRKLR 322
Query: 140 YLDMVIKESLRLYPPAYVAPRRATEDIHIGEFTIPKGTL 178
+ VI E++RL P +V RRA + +G + IP G
Sbjct: 323 HTGNVIVEAMRLRPAVWVLTRRAVAESELGGYRIPAGAD 361
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding,
monooxygenase, NADP, oxidoreductase, protein-inhibitor
complex; HET: HEM CM6; 1.50A {Mycobacterium
tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A*
2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A*
1e9x_A* 1u13_A*
Length = 455
Score = 118 bits (297), Expect = 6e-32
Identities = 31/125 (24%), Positives = 48/125 (38%), Gaps = 5/125 (4%)
Query: 56 DHRD--STLDDIKLADLQEELGEAHL-DELGLFNIAGIETLTTAFSAVIFLLSMHPEVQA 112
RD L +K + AG T + S + L H + A
Sbjct: 221 SDRDMLDVLIAVKAETGTPRFSADEITGMFISMMFAGHHTSSGTASWTLIELMRHRDAYA 280
Query: 113 KVYDELISIIGEDFHKKPSLSELENLKYLDMVIKESLRLYPPAYVAPRRATEDIHIGEFT 172
V DEL + G+ + S L + L+ V+KE+LRL+PP + R A + +
Sbjct: 281 AVIDELDELYGDG--RSVSFHALRQIPQLENVLKETLRLHPPLIILMRVAKGEFEVQGHR 338
Query: 173 IPKGT 177
I +G
Sbjct: 339 IHEGD 343
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial;
mitochondrial cytochrome P450, monotopic membrane
protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus
norvegicus} PDB: 3k9y_A*
Length = 482
Score = 117 bits (294), Expect = 2e-31
Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 9/136 (6%)
Query: 50 FVTGHSDHRDSTLDDIKLAD-LQEELGEAHLDELGL------FNIAGIETLTTAFSAVIF 102
V D+R AD L + + HL + L +A +ET + +++
Sbjct: 249 SVKPCIDNRLQRYSQQPGADFLCDIYQQDHLSKKELYAAVTELQLAAVETTANSLMWILY 308
Query: 103 LLSMHPEVQAKVYDELISIIGEDFHKKPSLSELENLKYLDMVIKESLRLYPPAYVAPRRA 162
LS +P+ Q ++ E+ S++ ++ + P +L N+ YL +KES+RL P R
Sbjct: 309 NLSRNPQAQRRLLQEVQSVLPDN--QTPRAEDLRNMPYLKACLKESMRLTPSVPFTTRTL 366
Query: 163 TEDIHIGEFTIPKGTL 178
+ +GE+ +PKGT+
Sbjct: 367 DKPTVLGEYALPKGTV 382
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase,
metal-binding, heme, iron; HET: HEM REA; 2.10A
{Synechocystis SP} PDB: 2ve4_A*
Length = 444
Score = 113 bits (286), Expect = 2e-30
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 3/98 (3%)
Query: 80 DELGLFNIAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKKPSLSELENLK 139
D++ L AG ETLT+A S+ LL H +++ +V E + ++ + L+ +
Sbjct: 246 DQILLLLFAGHETLTSALSSFCLLLGQHSDIRERVRQEQNKLQLS---QELTAETLKKMP 302
Query: 140 YLDMVIKESLRLYPPAYVAPRRATEDIHIGEFTIPKGT 177
YLD V++E LRL PP R +D F PKG
Sbjct: 303 YLDQVLQEVLRLIPPVGGGFRELIQDCQFQGFHFPKGW 340
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein,
alternative splicing, cholesterol biosynthesis,
endoplasmic reticulum, heme, iron; HET: HEM KLN BCD;
2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Length = 461
Score = 113 bits (285), Expect = 3e-30
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 80 DELGLFNIAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKKPSLSELENLK 139
L +AG T +T + + F L+ +Q K Y E ++ GE+ + +L++L
Sbjct: 255 GMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQKKCYLEQKTVCGENL-PPLTYDQLKDLN 313
Query: 140 YLDMVIKESLRLYPPAYVAPRRATEDIHIGEFTIPKGT 177
LD IKE+LRL PP + R A + +TIP G
Sbjct: 314 LLDRCIKETLRLRPPIMIMMRMARTPQTVAGYTIPPGH 351
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic
resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus
megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A*
1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A*
2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A*
2ij3_A* 2ij4_A* 3hf2_A* ...
Length = 470
Score = 111 bits (281), Expect = 1e-29
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 80 DELGLFNIAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKKPSLSELENLK 139
++ F IAG ET + S ++ L +P V K +E ++ + PS +++ LK
Sbjct: 256 YQIITFLIAGHETTSGLLSFALYFLVKNPHVLQKAAEEAARVLVD---PVPSYKQVKQLK 312
Query: 140 YLDMVIKESLRLYPPAYVAPRRATEDIHI-GEFTIPKGT 177
Y+ MV+ E+LRL+P A A ED + GE+ + KG
Sbjct: 313 YVGMVLNEALRLWPTAPAFSLYAKEDTVLGGEYPLEKGD 351
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450,
cholesterol SIDE chain cleavage, structural genomics,
structural genomics consortium, SGC; HET: HEM CLR; 2.10A
{Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Length = 487
Score = 109 bits (275), Expect = 1e-28
Identities = 20/92 (21%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 87 IAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKKPSLSELENLKYLDMVIK 146
G++T + ++ ++ + +VQ + E+++ + + + L+ + L IK
Sbjct: 285 AGGVDTTSMTLQWHLYEMARNLKVQDMLRAEVLAARHQA--QGDMATMLQLVPLLKASIK 342
Query: 147 ESLRLYPPAYVAPRRATEDIHIGEFTIPKGTL 178
E+LRL+P + R D+ + ++ IP TL
Sbjct: 343 ETLRLHPISVTLQRYLVNDLVLRDYMIPAKTL 374
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme,
oxidoreductase, monooxygenase, sterol biosynthesis,
lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A
{Trypanosoma brucei} PDB: 3g1q_A* 3p99_A* 2wv2_A*
2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Length = 450
Score = 103 bits (258), Expect = 2e-26
Identities = 17/100 (17%), Positives = 39/100 (39%), Gaps = 6/100 (6%)
Query: 80 DELGLFNIAGIETLTTAFSAVIFLLSMHPEVQA--KVYDELISIIGEDFHKKPSLSELEN 137
+ AG T + + + L V+ + E+ + + ++
Sbjct: 256 GMIVAAMFAGQHTSSITTTWSMLHLMHPANVKHLEALRKEIEEFPAQL----NYNNVMDE 311
Query: 138 LKYLDMVIKESLRLYPPAYVAPRRATEDIHIGEFTIPKGT 177
+ + + +ES+R PP + R+ D+ +G + +PKG
Sbjct: 312 MPFAERCARESIRRDPPLLMLMRKVMADVKVGSYVVPKGD 351
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty
acid biosynthesis, heme, iron, lipid synthesis, lyase,
metal-binding; HET: HEM; 1.80A {Parthenium argentatum}
PDB: 3dam_A* 3dbm_A*
Length = 473
Score = 99 bits (249), Expect = 3e-25
Identities = 23/149 (15%), Positives = 51/149 (34%), Gaps = 11/149 (7%)
Query: 35 KTILETVTKMGMVNFFVTGHSDHRDSTLDDIKLADLQEELGEAHLDELGLFNIAGIETLT 94
L T + ++F ++ + + ++ EA + L +
Sbjct: 229 PAFLIKSTYNKLYDYF----QSVATPVMEQAEKLGVPKD--EAVHNILFAVCFNTFGGVK 282
Query: 95 TAFSAVIFLLSM-HPEVQAKVYDELISIIGEDFHKKPSLSELENLKYLDMVIKESLRLYP 153
F + + + + ++ +E+ I +L +E + V+ ESLR+ P
Sbjct: 283 ILFPNTLKWIGLAGENLHTQLAEEIRGAIKSYGDGNVTLEAIEQMPLTKSVVYESLRIEP 342
Query: 154 PAYVAPRRATEDI----HIGEFTIPKGTL 178
P +A + H F + KG +
Sbjct: 343 PVPPQYGKAKSNFTIESHDATFEVKKGEM 371
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase,
structural genomics, structural genomics consortium,
SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo
sapiens} PDB: 3sn5_A*
Length = 491
Score = 99.4 bits (248), Expect = 5e-25
Identities = 31/151 (20%), Positives = 52/151 (34%), Gaps = 22/151 (14%)
Query: 46 MVNFFVTGHSDHRDSTLDDIKLADLQEELGEAHLDE------LGLFNIAGIET-LTTAFS 98
+ + R+S + I L + D L + A + F
Sbjct: 221 LAESLRHENLQKRESISELISLRMFLNDTLSTFDDLEKAKTHLVVL-WASQANTIPATFW 279
Query: 99 AVIFLLSMHPEVQAKVYDELISIIGED--------FHKKPSLSELENLKYLDMVIKESLR 150
++ ++ +PE +E+ + S +EL +L LD +IKESLR
Sbjct: 280 SLFQMIR-NPEAMKAATEEVKRTLENAGQKVSLEGNPICLSQAELNDLPVLDSIIKESLR 338
Query: 151 LYPPAYVAPRRATEDIHI----GEFTIPKGT 177
L + R A ED + G + I K
Sbjct: 339 LSSASLN-IRTAKEDFTLHLEDGSYNIRKDD 368
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus
thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Length = 389
Score = 98.5 bits (246), Expect = 6e-25
Identities = 28/121 (23%), Positives = 46/121 (38%), Gaps = 21/121 (17%)
Query: 59 DSTLDDIKLADLQEELGEAHL-DELGLFNIAGIETLTTAFSAVIFLLSMHPEVQAKVYDE 117
+ + + L E +AG ET+ +A + LLS P+ Q +V +
Sbjct: 191 YREAEALIVHPPLSHLPRERALSEAVTLLVAGHETVASALTWSFLLLSHRPDWQKRVAES 250
Query: 118 LISIIGEDFHKKPSLSELENLKYLDMVIKESLRLYPPAYVAPRRATEDIHIGEFTIPKGT 177
+ +E+LRLYPPA++ RR + +GE +P GT
Sbjct: 251 E--------------------EAALAAFQEALRLYPPAWILTRRLERPLLLGEDRLPPGT 290
Query: 178 L 178
Sbjct: 291 T 291
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid
biosynthesis, heme, iron, synthesis, lyase,
metal-binding, oxylipin biosynthesis; HET: HEM T25;
1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A*
3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Length = 495
Score = 97.3 bits (242), Expect = 3e-24
Identities = 31/183 (16%), Positives = 63/183 (34%), Gaps = 14/183 (7%)
Query: 1 MFNTKDIFSLFRESIKSVLTQIKCLERFTAFQSKKTILETVTKMGMVNFFVTGHSDHRDS 60
+ +F+L + I+ E S L + FF +
Sbjct: 215 LITKWVLFNLHPLLSIGLPRVIE--EPLIHTFSLPPALVKSDYQRLYEFF----LESAGE 268
Query: 61 TLDDIKLADLQEELGEAHLDELGLFNIAGIETLTTAFSAVI-FLLSMHPEVQAKVYDELI 119
L + + E EA + L + F ++ + +V ++ +E+
Sbjct: 269 ILVEADKLGISRE--EATHNLLFATCFNTWGGMKILFPNMVKRIGRAGHQVHNRLAEEIR 326
Query: 120 SIIGEDFHKKPSLSELENLKYLDMVIKESLRLYPPAYVAPRRATEDIHI----GEFTIPK 175
S+I + + ++ +E ++ V+ E LR PP RA +D+ I F +
Sbjct: 327 SVIKSN-GGELTMGAIEKMELTKSVVYECLRFEPPVTAQYGRAKKDLVIESHDAAFKVKA 385
Query: 176 GTL 178
G +
Sbjct: 386 GEM 388
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold,
hemoprotein, monoo cytochrome P450 reductase,
endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo
sapiens} PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A*
1tqn_A* 3ua1_A* 3tjs_A*
Length = 485
Score = 96.1 bits (240), Expect = 8e-24
Identities = 32/94 (34%), Positives = 55/94 (58%), Gaps = 2/94 (2%)
Query: 84 LFNIAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKKPSLSELENLKYLDM 143
+F AG ET ++ S +++ L+ HP+VQ K+ +E+ +++ P+ + ++YLDM
Sbjct: 279 IFIFAGYETTSSVLSFIMYELATHPDVQQKLQEEIDAVLPN--KAPPTYDTVLQMEYLDM 336
Query: 144 VIKESLRLYPPAYVAPRRATEDIHIGEFTIPKGT 177
V+ E+LRL+P A R +D+ I IPKG
Sbjct: 337 VVNETLRLFPIAMRLERVCKKDVEINGMFIPKGV 370
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome
P450, endoplasmic reticulum, fatty acid biosynthesis,
heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo
sapiens} PDB: 2iag_A*
Length = 498
Score = 93.3 bits (232), Expect = 8e-23
Identities = 30/135 (22%), Positives = 50/135 (37%), Gaps = 12/135 (8%)
Query: 54 HSDHRDSTLDDIKLADLQEELGEAHLDELGLFNI-AGIETLTTAFSAVIFLLSMHPEVQA 112
HR L+ L + + E + + A + A ++ L +PE A
Sbjct: 238 RRAHRSKWLESYLLHLEEMGVSEEMQARALVLQLWATQGNMGPAAFWLLLFLLKNPEALA 297
Query: 113 KVYDELISIIGEDFHKKP-----SLSELENLKYLDMVIKESLRLYPPAYVAPRRATEDIH 167
V EL SI+ + L++ LD V+ ESLRL ++ R D+
Sbjct: 298 AVRGELESILWQAEQPVSQTTTLPQKVLDSTPVLDSVLSESLRLTAAPFI-TREVVVDLA 356
Query: 168 I-----GEFTIPKGT 177
+ EF + +G
Sbjct: 357 MPMADGREFNLRRGD 371
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid
complex, riken structural genomics/proteomics
initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus
subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Length = 417
Score = 92.0 bits (229), Expect = 2e-22
Identities = 16/99 (16%), Positives = 28/99 (28%), Gaps = 20/99 (20%)
Query: 80 DELGLFNIAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKKPSLSELENLK 139
EL + + I ++ L HP+ + + N +
Sbjct: 235 IEL-INVLRPIVAISYFLVFSALALHEHPKYKEWLRSG-------------------NSR 274
Query: 140 YLDMVIKESLRLYPPAYVAPRRATEDIHIGEFTIPKGTL 178
+M ++E R YP +D KGT
Sbjct: 275 EREMFVQEVRRYYPFGPFLGALVKKDFVWNNCEFKKGTS 313
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase,
oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas
paucimobilis} PDB: 3awq_A* 3awp_A*
Length = 415
Score = 87.4 bits (217), Expect = 6e-21
Identities = 17/126 (13%), Positives = 37/126 (29%), Gaps = 22/126 (17%)
Query: 55 SDHRDSTLDDIKLA-DLQEELGEAHL-DELGLFNIAGIETLTTAFSAVIFLLSMHPEVQA 112
+ I D ++L H+ + + + + V L ++A
Sbjct: 206 GSGSGTAAYAIAWHRDRHDDLLSPHVAAVELVNVLRPTVAIAVYITFVAHALQTCSGIRA 265
Query: 113 KVYDELISIIGEDFHKKPSLSELENLKYLDMVIKESLRLYPPAYVAPRRATEDIHIGEFT 172
+ ++ Y ++ ++E R YP RA++D
Sbjct: 266 AL--------------------VQQPDYAELFVQEVRRFYPFFPAVVARASQDFEWEGMA 305
Query: 173 IPKGTL 178
P+G
Sbjct: 306 FPEGRQ 311
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1,
P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme
protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Length = 494
Score = 84.9 bits (211), Expect = 7e-20
Identities = 35/95 (36%), Positives = 55/95 (57%), Gaps = 4/95 (4%)
Query: 84 LFNIAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKKPSLSELENLKYLDM 143
+F AG+ET T+ + L +P+V+ K+Y+E+ +G F + P++S+ L L+
Sbjct: 281 IF-GAGVETTTSVVKWTLAFLLHNPQVKKKLYEEIDQNVG--FSRTPTISDRNRLLLLEA 337
Query: 144 VIKESLRLYPPAYVA-PRRATEDIHIGEFTIPKGT 177
I+E LRL P A + P +A D IGEF + KGT
Sbjct: 338 TIREVLRLRPVAPMLIPHKANVDSSIGEFAVDKGT 372
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET:
HEM 3QZ; 3.00A {Bos taurus}
Length = 496
Score = 84.2 bits (209), Expect = 1e-19
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 84 LFNIAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDF-HKKPSLSELENLKYLD 142
LF I G ET + S + L HPE+Q ++ +EL +G + + + L L+
Sbjct: 287 LF-IGGTETTASTLSWAVAFLLHHPEIQRRLQEELDRELGPGASCSRVTYKDRARLPLLN 345
Query: 143 MVIKESLRLYPPAYVA-PRRATEDIHIGEFTIPKGT 177
I E LRL P +A P R T I + IP+G
Sbjct: 346 ATIAEVLRLRPVVPLALPHRTTRPSSIFGYDIPEGM 381
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase,
alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase;
HET: HEM BHF; 2.70A {Homo sapiens}
Length = 507
Score = 83.0 bits (206), Expect = 4e-19
Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 84 LFNIAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKKPSLSELENLKYLDM 143
+F A +TL+TA ++ L + +P+VQ +V EL ++G + P + + NL Y+
Sbjct: 287 IF-GASQDTLSTALQWLLLLFTRYPDVQTRVQAELDQVVG--RDRLPCMGDQPNLPYVLA 343
Query: 144 VIKESLRLYPPAYVA-PRRATEDIHIGEFTIPKGT 177
+ E++R V P T + + + IPK T
Sbjct: 344 FLYEAMRFSSFVPVTIPHATTANTSVLGYHIPKDT 378
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing
enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8-
benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo
sapiens}
Length = 495
Score = 81.8 bits (203), Expect = 9e-19
Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
Query: 84 LFNIAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKKPSLSELENLKYLDM 143
+F AG +T+TTA S + L PE+Q K+ EL ++IG ++P LS+ L YL+
Sbjct: 290 IF-GAGFDTVTTAISWSLMYLVTKPEIQRKIQKELDTVIG--RERRPRLSDRPQLPYLEA 346
Query: 144 VIKESLRLYPPAYVA-PRRATEDIHIGEFTIPKGT 177
I E+ R P T D + F IPK
Sbjct: 347 FILETFRHSSFLPFTIPHSTTRDTTLNGFYIPKKC 381
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug
metabolism, structural genomics, structural genomics
consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens}
SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Length = 481
Score = 81.5 bits (202), Expect = 9e-19
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 10/98 (10%)
Query: 84 LFNIAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKKPSLSELENLKYLDM 143
L IAG ET T I ++++P +Q +V E+ I+G + KPS + + Y +
Sbjct: 281 LI-IAGTETTTNVLRWAILFMALYPNIQGQVQKEIDLIMGPN--GKPSWDDKCKMPYTEA 337
Query: 144 VIKESLRLYPPAYVAP----RRATEDIHIGEFTIPKGT 177
V+ E LR + P +ED + ++IPKGT
Sbjct: 338 VLHEVLRF---CNIVPLGIFHATSEDAVVRGYSIPKGT 372
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase;
HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Length = 479
Score = 81.4 bits (202), Expect = 1e-18
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 10/98 (10%)
Query: 84 LFNIAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKKPSLSELENLKYLDM 143
LF AG+ T +T + + L+ +HP+VQ +V E+ +IG+ ++P + + ++ Y
Sbjct: 280 LF-SAGMVTTSTTLAWGLLLMILHPDVQRRVQQEIDDVIGQV--RRPEMGDQAHMPYTTA 336
Query: 144 VIKESLRLYPPAYVAP----RRATEDIHIGEFTIPKGT 177
VI E R + P + DI + F IPKGT
Sbjct: 337 VIHEVQRF---GDIVPLGVTHMTSRDIEVQGFRIPKGT 371
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme,
oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP:
a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A*
2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Length = 477
Score = 80.3 bits (199), Expect = 2e-18
Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 10/98 (10%)
Query: 84 LFNIAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKKPSLSELENLKYLDM 143
LF AG ET +T + LL HPEV AKV +E+ +IG ++ P + + ++ Y D
Sbjct: 277 LF-GAGTETTSTTLRYALLLLLKHPEVTAKVQEEIERVIGR--NRSPCMQDRSHMPYTDA 333
Query: 144 VIKESLRLYPPAYVAP----RRATEDIHIGEFTIPKGT 177
V+ E R + P T DI + IPKGT
Sbjct: 334 VVHEVQRY---IDLLPTSLPHAVTCDIKFRNYLIPKGT 368
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing
enzyme, coumarin 7-hydroxylase, nicotine oxidase,
oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB:
1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A*
2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Length = 476
Score = 79.1 bits (196), Expect = 6e-18
Identities = 35/98 (35%), Positives = 53/98 (54%), Gaps = 10/98 (10%)
Query: 84 LFNIAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKKPSLSELENLKYLDM 143
LF I G ET++T LL HPEV+AKV++E+ +IG+ +++P + + Y++
Sbjct: 276 LF-IGGTETVSTTLRYGFLLLMKHPEVEAKVHEEIDRVIGK--NRQPKFEDRAKMPYMEA 332
Query: 144 VIKESLRLYPPAYVAP----RRATEDIHIGEFTIPKGT 177
VI E R V P RR +D +F +PKGT
Sbjct: 333 VIHEIQRF---GDVIPMSLARRVKKDTKFRDFFLPKGT 367
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP
LM2, cytochro monooxygenase; HET: HEM; 1.60A
{Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A*
2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A*
3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Length = 476
Score = 78.8 bits (195), Expect = 9e-18
Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 84 LFNIAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKKPSLSELENLKYLDM 143
LF AG ET +T L+ +P V +V E+ +IG H+ P+L + + Y D
Sbjct: 276 LF-FAGTETTSTTLRYGFLLMLKYPHVTERVQKEIEQVIGS--HRPPALDDRAKMPYTDA 332
Query: 144 VIKESLRLYPPAYVAP----RRATEDIHIGEFTIPKGT 177
VI E RL + P T+D + IPK T
Sbjct: 333 VIHEIQRL---GDLIPFGVPHTVTKDTQFRGYVIPKNT 367
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase,
acetaminophen, oxidoreductase, heme, endoplasmic
reticulum, iron, membrane; HET: HEM; 2.20A {Homo
sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Length = 476
Score = 78.7 bits (195), Expect = 1e-17
Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 10/98 (10%)
Query: 84 LFNIAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKKPSLSELENLKYLDM 143
LF AG ET +T + +L +PE++ K+++E+ +IG + P++ + + + Y+D
Sbjct: 275 LF-FAGTETTSTTLRYGLLILMKYPEIEEKLHEEIDRVIGPS--RIPAIKDRQEMPYMDA 331
Query: 144 VIKESLRLYPPAYVAP----RRATEDIHIGEFTIPKGT 177
V+ E R + P AT D + IPKGT
Sbjct: 332 VVHEIQRF---ITLVPSNLPHEATRDTIFRGYLIPKGT 366
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450
8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio}
PDB: 3b99_A*
Length = 475
Score = 78.1 bits (193), Expect = 2e-17
Identities = 37/187 (19%), Positives = 63/187 (33%), Gaps = 30/187 (16%)
Query: 5 KDIFSLFRESIKSVLTQIKCLERFTAFQSKKTILETVTKMGMVNFFVTGHSDHRDSTLDD 64
I+ FR K + L R T + +K I + + + D +
Sbjct: 182 TQIYEEFRRFDKL----LPKLARTTVNKEEKQIASAAREK-LWKWLTPSGLDRKPREQSW 236
Query: 65 IK-LADLQEELG-------EAHLDELGLFNIAGIE-TLTTAFSAVIFLLSMHPEVQAKVY 115
+ ++ G A L +L AF + +LL+ HPE V
Sbjct: 237 LGSYVKQLQDEGIDAEMQRRAMLLQL----WVTQGNAGPAAFWVMGYLLT-HPEALRAVR 291
Query: 116 DELISIIGEDFHKKPSLSELENLKYLDMVIKESLRLYPPAYVAPRRATEDIHI-----GE 170
+E+ + +N D V+ E+LRL A + R T+D I E
Sbjct: 292 EEI-----QGGKHLRLEERQKNTPVFDSVLWETLRLTAAALI-TRDVTQDKKICLSNGQE 345
Query: 171 FTIPKGT 177
+ + +G
Sbjct: 346 YHLRRGD 352
>2yjn_B Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase; transferase,
cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Length = 381
Score = 53.1 bits (128), Expect = 6e-09
Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 20/118 (16%)
Query: 59 DSTLDDIKLADLQEELGEAHLDELGLFNIAGIETLTTAFSAVIFLLSMHPEVQAKVYDEL 118
D+ L +LA + + D AG E + +S P + ++ D+
Sbjct: 193 DAQLSPQQLAVTEAAVAALPADPALRALFAGAEMTANTVVDAVLAVSAEPGLAERIADD- 251
Query: 119 ISIIGEDFHKKPSLSELENLKYLDMVIKESLRLYPPAYVAPRRATEDIHIGEFTIPKG 176
P+ + E LRL+P ++ R AT ++ +GE I +G
Sbjct: 252 -----------PAA--------AQRTVAEVLRLHPALHLERRTATAEVRLGEHVIGEG 290
>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A
{Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A*
4dnz_A*
Length = 412
Score = 52.3 bits (126), Expect = 1e-08
Identities = 22/133 (16%), Positives = 43/133 (32%), Gaps = 27/133 (20%)
Query: 50 FVTGHSDHRDSTLDDIKLADLQEELGEAHL--DEL----GLFNIAGIETLTTAFSAVIFL 103
+V + A + + +E AG++T +A ++
Sbjct: 208 YVAEQCQRPNLAPGGF-GACIHAFSDTGEITPEEAPLLVRSLLSAGLDTTVNGIAAAVYC 266
Query: 104 LSMHPEVQAKVYDELISIIGEDFHKKPSLSELENLKYLDMVIKESLRLYPPAYVAPRRAT 163
L+ P+ A++ + PSL +E++R P R T
Sbjct: 267 LARFPDEFARLRAD------------PSL--------ARNAFEEAVRFESPVQTFFRTTT 306
Query: 164 EDIHIGEFTIPKG 176
D+ + TI +G
Sbjct: 307 RDVELAGATIGEG 319
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein,
oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB:
3nc5_A* 3nc6_A* 3nc7_A*
Length = 441
Score = 51.9 bits (125), Expect = 2e-08
Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 26/115 (22%)
Query: 63 DDIKLADLQEELGEAHLDELGLFNIAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISII 122
+ + L+D +++ L + +A E + +I+ L +PE V +
Sbjct: 250 EGMALSD--KDI----LALILNVLLAATEPADKTLALMIYHLLNNPEQMNDVLAD----- 298
Query: 123 GEDFHKKPSLSELENLKYLDMVIKESLRLYPPAYVAPRRATEDIHIGEFTIPKGT 177
SL + I E+LR PP + PR+ ++D +G I K T
Sbjct: 299 -------RSL--------VPRAIAETLRYKPPVQLIPRQLSQDTVVGGMEIKKDT 338
>2uuq_A CYP130, cytochrome P450 130; iron, heme, monooxygenase,
metal-binding, oxidoreductase, hypothetical protein;
HET: HEM; 1.46A {Mycobacterium tuberculosis} PDB:
2uvn_A* 2whf_A* 2wh8_A* 2wgy_A*
Length = 414
Score = 50.0 bits (120), Expect = 7e-08
Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 20/90 (22%)
Query: 87 IAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKKPSLSELENLKYLDMVIK 146
G +T+T + LL P+ + + D+ P + ++
Sbjct: 249 TGGNDTVTGMLGGSMPLLHRRPDQRRLLLDD------------PEG--------IPDAVE 288
Query: 147 ESLRLYPPAYVAPRRATEDIHIGEFTIPKG 176
E LRL P R T D+ IG+ TIP G
Sbjct: 289 ELLRLTSPVQGLARTTTRDVTIGDTTIPAG 318
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase,
metal-binding, AN biosynthesis, TIE-ROD mechanism of
action; HET: HEM; 1.59A {Saccharopolyspora erythraea}
PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A*
Length = 411
Score = 50.0 bits (120), Expect = 8e-08
Identities = 22/114 (19%), Positives = 34/114 (29%), Gaps = 26/114 (22%)
Query: 63 DDIKLADLQEELGEAHLDELGLFNIAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISII 122
D L D EE + +AG T T ++ L HP ++
Sbjct: 222 DGRALDD--EEA----ANFSTALLLAGHITTTVLLGNIVRTLDEHPAHWDAAAED----- 270
Query: 123 GEDFHKKPSLSELENLKYLDMVIKESLRLYPPAYVAPRRATEDIHIGEFTIPKG 176
P + +++E LR PP R T+ + IP
Sbjct: 271 -------PGR--------IPAIVEEVLRYRPPFPQMQRTTTKATEVAGVPIPAD 309
>3oft_A Cytochrome P450, CYP101C1; oxidoreductase; HET: HEM; 1.90A
{Novosphingobium aromaticivorans} PDB: 3ofu_A*
Length = 396
Score = 49.9 bits (120), Expect = 8e-08
Identities = 26/121 (21%), Positives = 40/121 (33%), Gaps = 29/121 (23%)
Query: 63 DDIKLADL-QEELGEAHLDELGLFN------IAGIETLTTAFSAVIFLLSMHPEVQAKVY 115
DD+ + + E +G G++T+ V L+ HPE Q +
Sbjct: 203 DDL-FSRILSEPVGGRPWTVDEARRMCRNLLFGGLDTVAAMIGMVALHLARHPEDQRLLR 261
Query: 116 DELISIIGEDFHKKPSLSELENLKYLDMVIKESLRLYPPAYVAPRRATEDIHIGEFTIPK 175
+ P L + E +R YP V+ R A D+ TI K
Sbjct: 262 ER------------PDL--------IPAAADELMRRYPTVAVS-RNAVADVDADGVTIRK 300
Query: 176 G 176
G
Sbjct: 301 G 301
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.5 bits (117), Expect = 1e-07
Identities = 32/165 (19%), Positives = 47/165 (28%), Gaps = 38/165 (23%)
Query: 23 KCLERFTAFQSKKTILETVTKMGMVNFFVTGHSDHRDSTLDDIKLADLQEELGEAHLDEL 82
K F K IL T + +F + H I L L + L
Sbjct: 257 KAWNAFN-LSCK--ILLTTRFKQVTDFLSAATTTH-------ISLDHHSMTLTPDEVKSL 306
Query: 83 GLFNIAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKKPSLSELENLKY-- 140
L L P +SII E + +N K+
Sbjct: 307 -LLKYLDCR---------PQDL---PREVLTTNPRRLSIIAESIRDGLAT--WDNWKHVN 351
Query: 141 ---LDMVIKESLRLYPPAYVAPRRATEDIHIGEF----TIPKGTL 178
L +I+ SL + PA R+ + + + F IP L
Sbjct: 352 CDKLTTIIESSLNVLEPAEY--RKMFDRLSV--FPPSAHIPTILL 392
Score = 28.3 bits (62), Expect = 1.8
Identities = 26/175 (14%), Positives = 49/175 (28%), Gaps = 42/175 (24%)
Query: 8 FSLFRESIKSVLTQI--KCLERF---TAFQSKKTILETVTKMGMVNFFVTGHSDHRDSTL 62
S+F S I L ++ + K +V ++
Sbjct: 378 LSVFPPSAH-----IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE----KQPKESTISI 428
Query: 63 DDIKLADLQ---EELGEAHLDELGLFNIAGIETLTTAFSAVIFLLSMHPEVQAKVY-DEL 118
I L +L+ E H ++ ++ + + Y D+
Sbjct: 429 PSIYL-ELKVKLENEYALH------------RSIVDHYN---IPKTFDSDDLIPPYLDQY 472
Query: 119 I-SIIGEDFH-KKPSLSELENL---KYLDM-VIKESLRLYPPAYVAPRRATEDIH 167
S IG H K E L +LD +++ +R A+ A +
Sbjct: 473 FYSHIG--HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ 525
Score = 27.5 bits (60), Expect = 3.2
Identities = 29/157 (18%), Positives = 59/157 (37%), Gaps = 24/157 (15%)
Query: 5 KDIFSLFRESIKSVLTQIKCLERFTAFQSKKTILETVTKMGMVNFFVTGHSDHRDSTLDD 64
KDI S+F ++ K ++ K+IL +K + + ++ + L
Sbjct: 19 KDILSVFEDAFVDNF-DCKDVQDMP-----KSIL---SKEEIDHIIMSKDAVSGTLRLFW 69
Query: 65 IKLADLQEELGEAHLDELGLFNIAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGE 124
L QEE+ + ++E+ N + L + P + ++Y E +
Sbjct: 70 T-LLSKQEEMVQKFVEEVLRIN---YKFLMSPIKTE----QRQPSMMTRMYIEQRDRLYN 121
Query: 125 DFH--KKPSLSELENLKYLDMVIKESL-RLYPPAYVA 158
D K ++S L+ ++++L L P V
Sbjct: 122 DNQVFAKYNVSRLQPYL----KLRQALLELRPAKNVL 154
Score = 26.7 bits (58), Expect = 5.6
Identities = 17/91 (18%), Positives = 38/91 (41%), Gaps = 14/91 (15%)
Query: 6 DIFSLFRESIKSVLTQIKCLER-----FTAFQSKKTILETVTKMGMVNFFVTGHSDHRDS 60
+ +LFR V + LE+ TA+ + +IL T+ ++ ++ + +
Sbjct: 488 ERMTLFRM----VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543
Query: 61 TLDDIK--LADLQEELGEA-HLD--ELGLFN 86
++ I L ++E L + + D + L
Sbjct: 544 LVNAILDFLPKIEENLICSKYTDLLRIALMA 574
>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans} PDB: 3lxi_A*
Length = 421
Score = 48.8 bits (117), Expect = 2e-07
Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 21/90 (23%)
Query: 87 IAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKKPSLSELENLKYLDMVIK 146
+ G++T+ ++ LS HPE A++ E P L ++
Sbjct: 255 LGGLDTVVNFLGFMMIYLSRHPETVAEMRRE------------PLK--------LQRGVE 294
Query: 147 ESLRLYPPAYVAPRRATEDIHIGEFTIPKG 176
E R + A R D+ + +G
Sbjct: 295 ELFRRFAVVSDA-RYVVSDMEFHGTMLKEG 323
>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450
fold, structural genomics, PSI, protein structure
initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis}
SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A*
3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A*
Length = 396
Score = 48.8 bits (117), Expect = 2e-07
Identities = 23/136 (16%), Positives = 57/136 (41%), Gaps = 30/136 (22%)
Query: 50 FVTGHSDHRDSTLDDI-KLADLQEELGEAHLDE-------LGLFNIAGIETLTTAFSAVI 101
++ G ++ + T + +L+ L+++ +H+ + + F AG+ + + + +
Sbjct: 188 YMAGILENPNITTGLMGELSRLRKDPAYSHVSDELFATIGVTFF-GAGVISTGSFLTTAL 246
Query: 102 FLLSMHPEVQAKVYDELISIIGEDFHKKPSLSELENLKYLDMVIKESLRLYPPAYVAPRR 161
L P+++ ++++ P L + ++E LR+ R
Sbjct: 247 ISLIQRPQLRNLLHEK------------PEL--------IPAGVEELLRINLSFADGLPR 286
Query: 162 -ATEDIHIGEFTIPKG 176
AT DI +G+ + KG
Sbjct: 287 LATADIQVGDVLVRKG 302
>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM
EDO; 1.37A {Citrobacter braakii} PDB: 1t2b_A* 3bdz_A*
3be0_A*
Length = 398
Score = 48.4 bits (116), Expect = 2e-07
Identities = 23/114 (20%), Positives = 46/114 (40%), Gaps = 27/114 (23%)
Query: 63 DDIKLADLQEELGEAHLDELGLFNIAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISII 122
D L++ ++L + + + GI+ S+V + L+ E++ ++
Sbjct: 213 DGESLSE--DDL----IGFFTILLLGGIDNTARFLSSVFWRLAWDIELRRRLIAH----- 261
Query: 123 GEDFHKKPSLSELENLKYLDMVIKESLRLYPPAYVAPRRATEDIHIGEFTIPKG 176
P L + + E LR Y PA V R T+++ +G+ T+ G
Sbjct: 262 -------PEL--------IPNAVDELLRFYGPAMVG-RLVTQEVTVGDITMKPG 299
>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12;
1.89A {Mycobacterium smegmatis} PDB: 3r9c_A*
Length = 418
Score = 48.4 bits (116), Expect = 3e-07
Identities = 23/91 (25%), Positives = 34/91 (37%), Gaps = 20/91 (21%)
Query: 87 IAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKKPSLSELENLKYLDMVIK 146
IAG ET + + P A + + S VI+
Sbjct: 255 IAGHETTVNLIANAALAMLRTPGQWAALAAD------------GSR--------ASAVIE 294
Query: 147 ESLRLYPPAYVAPRRATEDIHIGEFTIPKGT 177
E++R PP + R A +D+ IG T+PKG
Sbjct: 295 ETMRYDPPVQLVSRYAGDDLTIGTHTVPKGD 325
>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron,
metal-binding, oxidoreductase, substrate-soaking,
cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB:
1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A*
2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A*
1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ...
Length = 415
Score = 48.1 bits (115), Expect = 3e-07
Identities = 16/106 (15%), Positives = 32/106 (30%), Gaps = 22/106 (20%)
Query: 72 EELGEAHLDELG-LFNIAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKKP 130
+ + L + G++T+ S + L+ PE + ++ + P
Sbjct: 232 RPITSDEAKRMCGLLLVGGLDTVVNFLSFSMEFLAKSPEHRQELIER------------P 279
Query: 131 SLSELENLKYLDMVIKESLRLYPPAYVAPRRATEDIHIGEFTIPKG 176
+ +E LR + R T D + KG
Sbjct: 280 ER--------IPAACEELLRRFSLVADG-RILTSDYEFHGVQLKKG 316
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme,
monooxygenase, macrolide, filipi metal-binding; HET:
HEM; 2.30A {Streptomyces avermitilis}
Length = 408
Score = 47.6 bits (114), Expect = 5e-07
Identities = 32/122 (26%), Positives = 44/122 (36%), Gaps = 30/122 (24%)
Query: 63 DDIKLADL-QEELGEAHLDE-------LGLFNIAGIETLTTAFSAVIFLLSMHPEVQAKV 114
D + L +L +L E LD L L +AG ET A + L HPE +
Sbjct: 212 DGL-LDELIARQLEEGDLDHDEVVMIALVLL-VAGHETTVNAIALGALTLIQHPEQIDVL 269
Query: 115 YDELISIIGEDFHKKPSLSELENLKYLDMVIKESLRLYPPAYVAPRRATEDIHIGEFTIP 174
+ P + V++E LR + R A EDI +G TI
Sbjct: 270 LRD------------PGA--------VSGVVEELLRFTSVSDHIVRMAKEDIEVGGATIK 309
Query: 175 KG 176
G
Sbjct: 310 AG 311
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent,
mono-oxygenases, oxidoreductase; HET: HEM; 2.00A
{Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Length = 417
Score = 47.3 bits (113), Expect = 5e-07
Identities = 20/106 (18%), Positives = 36/106 (33%), Gaps = 22/106 (20%)
Query: 72 EELGEAHLDELG-LFNIAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKKP 130
E + L L + G++T+ S + L+ HPE+ A++ + P
Sbjct: 238 ERIAHDKAQGLISLLLLGGLDTVVNFLSFFMIHLARHPELVAELRSD------------P 285
Query: 131 SLSELENLKYLDMVIKESLRLYPPAYVAPRRATEDIHIGEFTIPKG 176
L +E R +P A R +D + +G
Sbjct: 286 LK--------LMRGAEEMFRRFPVVSEA-RMVAKDQEYKGVFLKRG 322
>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin,
oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora
erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A*
1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A*
Length = 404
Score = 46.8 bits (112), Expect = 8e-07
Identities = 30/124 (24%), Positives = 46/124 (37%), Gaps = 31/124 (25%)
Query: 63 DDIKLADL--QEELGEAHLDE-------LGLFNIAGIETLTTAFSAVIFLLSMHPEVQAK 113
DD+ L+ L ++ + L L L +AG E + +LL HP+ A
Sbjct: 209 DDL-LSALIRVQDDDDGRLSADELTSIALVLL-LAGFEASVSLIGIGTYLLLTHPDQLAL 266
Query: 114 VYDELISIIGEDFHKKPSLSELENLKYLDMVIKESLRLYPPAYVAPRRATEDIHIGEFTI 173
V + PS L ++E LR P R A E++ IG I
Sbjct: 267 VRRD------------PSA--------LPNAVEEILRYIAPPETTTRFAAEEVEIGGVAI 306
Query: 174 PKGT 177
P+ +
Sbjct: 307 PQYS 310
>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM;
1.60A {Mycobacterium tuberculosis}
Length = 398
Score = 46.8 bits (112), Expect = 9e-07
Identities = 22/101 (21%), Positives = 29/101 (28%), Gaps = 24/101 (23%)
Query: 80 DELGLF----NIAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKKPSLSEL 135
DEL + I G ET S L + + + + PSL
Sbjct: 218 DELVMETLLILIGGDETTRHTLSGGTEQLLRNRDQWDLLQRD------------PSL--- 262
Query: 136 ENLKYLDMVIKESLRLYPPAYVAPRRATEDIHIGEFTIPKG 176
L I+E LR P R T D + G
Sbjct: 263 -----LPGAIEEMLRWTAPVKNMCRVLTADTEFHGTALCAG 298
>3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreducta
binding protein; HET: HEM; 2.47A {Micromonospora
echinospora}
Length = 397
Score = 46.4 bits (111), Expect = 1e-06
Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 20/91 (21%)
Query: 87 IAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKKPSLSELENLKYLDMVIK 146
G ET+ + + L HP+ + P L L ++
Sbjct: 232 FTGHETVASQVGNAVLSLLAHPDQLDLLRRR------------PDL--------LAQAVE 271
Query: 147 ESLRLYPPAYVAPRRATEDIHIGEFTIPKGT 177
E LR P R+ D+ + + +
Sbjct: 272 ECLRYDPSVQSNTRQLDVDVELRGRRLRRDD 302
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET:
HEM; 2.90A {Streptomyces coelicolor}
Length = 417
Score = 46.1 bits (110), Expect = 2e-06
Identities = 28/123 (22%), Positives = 45/123 (36%), Gaps = 31/123 (25%)
Query: 63 DDIKLADL-QEELGEAHLDE-------LGLFNIAGIETLTTAFSAVIFLLSMHPEVQAKV 114
DD+ ++ L + L ++ AG ET T+ + LL PE+ A++
Sbjct: 218 DDL-ISKLVTDHLVPGNVTTEQLLSTLGITI-NAGRETTTSMIALSTLLLLDRPELPAEL 275
Query: 115 YDELISIIGEDFHKKPSLSELENLKYLDMVIKESLRLYPPAYVAPRR-ATEDIHIGEFTI 173
+ P L + + E LR+ A P R A EDI + T+
Sbjct: 276 RKD------------PDL--------MPAAVDELLRVLSVADSIPLRVAAEDIELSGRTV 315
Query: 174 PKG 176
P
Sbjct: 316 PAD 318
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450
vancomycin, oxidoreductase; HET: HEM; 1.70A
{Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A*
1lgf_A*
Length = 398
Score = 46.1 bits (110), Expect = 2e-06
Identities = 16/119 (13%), Positives = 32/119 (26%), Gaps = 32/119 (26%)
Query: 69 DLQEELGEAHLDEL----------GLFNIAGIETLTTAFSAVIFLLSMHPEVQAKVYDEL 118
+ + + D+ + +AG + ++ + + HPE +
Sbjct: 208 GMIGAVVAEYGDDATDEELRGFCVQVM-LAGDDNISGMIGLGVLAMLRHPEQIDAFRGD- 265
Query: 119 ISIIGEDFHKKPSLSELENLKYLDMVIKESLRLYPPAYVAPRR-ATEDIHIGEFTIPKG 176
+ E +R Y R A ED+ + I KG
Sbjct: 266 -----------EQS--------AQRAVDELIRYLTVPYSPTPRIAREDLTLAGQEIKKG 305
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide,
filipi metal-binding, oxidoreductase-antibiotic complex;
HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB:
3e5j_A* 3e5k_A* 3e5l_A*
Length = 403
Score = 46.1 bits (110), Expect = 2e-06
Identities = 27/123 (21%), Positives = 43/123 (34%), Gaps = 31/123 (25%)
Query: 63 DDIKLADL-QEELGEAHLDE-------LGLFNIAGIETLTTAFSAVIFLLSMHPEVQAKV 114
DD+ ++ L E + +D+ L IA +T LL P+ A +
Sbjct: 206 DDL-ISALITTEDPDGVVDDMFLMNAAGTLL-IAAHDTTACMIGLGTALLLDSPDQLALL 263
Query: 115 YDELISIIGEDFHKKPSLSELENLKYLDMVIKESLRLYPPAYVAPRR-ATEDIHIGEFTI 173
++ PSL + ++E LR R AT D+ +G I
Sbjct: 264 RED------------PSL--------VGNAVEELLRYLTIGQFGGERVATRDVELGGVRI 303
Query: 174 PKG 176
KG
Sbjct: 304 AKG 306
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding,
monooxygenase, oxidoreductase; HET: HEM; 1.50A
{Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A*
3cv9_A*
Length = 412
Score = 45.7 bits (109), Expect = 2e-06
Identities = 29/123 (23%), Positives = 44/123 (35%), Gaps = 31/123 (25%)
Query: 63 DDIKLADL-QEELGEAHLDE-------LGLFNIAGIETLTTAFSAVIFLLSMHPEVQAKV 114
+ + L ++L +D + L IAG ET + S + L HPE A +
Sbjct: 213 AGL-VGALVADQLANGEIDREELISTAMLLL-IAGHETTASMTSLSVITLLDHPEQYAAL 270
Query: 115 YDELISIIGEDFHKKPSLSELENLKYLDMVIKESLRLYPPAYVAPRR-ATEDIHIGEFTI 173
+ SL + ++E LR A +A R AT DI + I
Sbjct: 271 RAD------------RSL--------VPGAVEELLRYLAIADIAGGRVATADIEVEGQLI 310
Query: 174 PKG 176
G
Sbjct: 311 RAG 313
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR,
atomic resolutio structural genomics/proteomics
initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum}
SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A*
1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A*
1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A*
Length = 404
Score = 45.7 bits (109), Expect = 2e-06
Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 29/122 (23%)
Query: 63 DDIKLADL-QEELGEAHLDELGLFN------IAGIETLTTAFSAVIFLLSMHPEVQAKVY 115
DDI ++ L E++ ++D+ +AG T+ + + L+ HP+ A++
Sbjct: 209 DDI-ISKLCTEQVKPGNIDKSDAVQIAFLLLVAGNATMVNMIALGVATLAQHPDQLAQLK 267
Query: 116 DELISIIGEDFHKKPSLSELENLKYLDMVIKESLRLYPPAYVAPRR-ATEDIHIGEFTIP 174
PSL ++E R + + +A +R A ED+ IG+ +
Sbjct: 268 AN------------PSL--------APQFVEELCRYHTASALAIKRTAKEDVMIGDKLVR 307
Query: 175 KG 176
Sbjct: 308 AN 309
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX,
bioremediation, electron transport; HET: HEM; 1.49A
{Rhodococcus} PDB: 2wiv_A*
Length = 394
Score = 45.7 bits (109), Expect = 2e-06
Identities = 20/90 (22%), Positives = 30/90 (33%), Gaps = 20/90 (22%)
Query: 87 IAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKKPSLSELENLKYLDMVIK 146
G + ++ I L + PEV ++ S +I
Sbjct: 232 AVGHMAIGYLIASGIELFARRPEVFTAFRND------------ESA--------RAAIIN 271
Query: 147 ESLRLYPPAYVAPRRATEDIHIGEFTIPKG 176
E +R+ PP R TED+ IG I G
Sbjct: 272 EMVRMDPPQLSFLRFPTEDVEIGGVLIEAG 301
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105,
oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea
recticatena}
Length = 413
Score = 45.7 bits (109), Expect = 2e-06
Identities = 31/123 (25%), Positives = 40/123 (32%), Gaps = 31/123 (25%)
Query: 63 DDIKLADL-QEELGEAHLDE-------LGLFNIAGIETLTTAFSAVIFLLSMHPEVQAKV 114
DD+ + + E LD L AG ET S + L HPE V
Sbjct: 214 DDL-FSRQIARQRQEGTLDHAGLVSLAFLLL-TAGHETTANMISLGVVGLLSHPEQLTVV 271
Query: 115 YDELISIIGEDFHKKPSLSELENLKYLDMVIKESLRLYPPAYVAPRR-ATEDIHIGEFTI 173
P M ++E LR + A R ATED+ IG +I
Sbjct: 272 KAN------------PGR--------TPMAVEELLRYFTIADGVTSRLATEDVEIGGVSI 311
Query: 174 PKG 176
G
Sbjct: 312 KAG 314
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A
{Streptomyces natalensis} PDB: 2x9p_A*
Length = 404
Score = 45.7 bits (109), Expect = 2e-06
Identities = 26/117 (22%), Positives = 46/117 (39%), Gaps = 30/117 (25%)
Query: 69 DLQEELGEAHLDE-------LGLFNIAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISI 121
D+ L + L E +GL AG++++ + + LL+ HP+ +A +
Sbjct: 216 DIISRLNDGELTEDRVAHLAMGLL-FAGLDSVASIMDNGVVLLAAHPDQRAAALAD---- 270
Query: 122 IGEDFHKKPSLSELENLKYLDMVIKESLRLYPPA--YVAPRRATEDIHIGEFTIPKG 176
P + + ++E LR + PR A+ED+ G TI G
Sbjct: 271 --------PDV--------MARAVEEVLRTARAGGSVLPPRYASEDMEFGGVTIRAG 311
>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: HEM; 1.50A {Sulfolobus
solfataricus} SCOP: a.104.1.1 PDB: 1f4u_A* 1f4t_A*
1io9_A* 1io8_A*
Length = 368
Score = 45.3 bits (108), Expect = 3e-06
Identities = 23/118 (19%), Positives = 40/118 (33%), Gaps = 29/118 (24%)
Query: 63 DDIKLADLQEELGEAHLDELG----LFNIAGIETLTTAFSAVIFLLSMHPEVQAKVYDEL 118
++ + L + E L IAG ET T S + + ++ +
Sbjct: 183 TEVVSRVVNSNLSD---IEKLGYIILLLIAGNETTTNLISNSVIDFTRFNL-WQRIRE-- 236
Query: 119 ISIIGEDFHKKPSLSELENLKYLDMVIKESLRLYPPAYVAPRRATEDIHIGEFTIPKG 176
+L I+E+LR PP R+ E + +G+ TI +G
Sbjct: 237 -----------ENL--------YLKAIEEALRYSPPVMRTVRKTKERVKLGDQTIEEG 275
>2z3t_A Cytochrome P450; monoxygenase, oxydoreductase, heme-enzyme,
oxidoreductase; HET: HEM; 1.90A {Streptomyces SP} PDB:
2z3u_A* 3a1l_A*
Length = 425
Score = 45.3 bits (108), Expect = 3e-06
Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 20/90 (22%)
Query: 87 IAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKKPSLSELENLKYLDMVIK 146
AG ET T + + L H +V ++ P ++
Sbjct: 253 TAGHETTTNFLAKAVLTLRAHRDVLDELRTT------------PES--------TPAAVE 292
Query: 147 ESLRLYPPAYVAPRRATEDIHIGEFTIPKG 176
E +R PP R A EDI +G+ IP+G
Sbjct: 293 ELMRYDPPVQAVTRWAYEDIRLGDHDIPRG 322
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein
complex, cytochrome P450 fold, carrier protein, 4-helix
bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus
subtilis} PDB: 3ejd_B* 3eje_B*
Length = 404
Score = 45.3 bits (108), Expect = 3e-06
Identities = 26/91 (28%), Positives = 35/91 (38%), Gaps = 20/91 (21%)
Query: 87 IAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKKPSLSELENLKYLDMVIK 146
IAG ET S + L HPE K+ + P L + ++
Sbjct: 233 IAGHETTVNLISNSVLCLLQHPEQLLKLREN------------PDL--------IGTAVE 272
Query: 147 ESLRLYPPAYVAPRRATEDIHIGEFTIPKGT 177
E LR P + R A+EDI I TI +G
Sbjct: 273 ECLRYESPTQMTARVASEDIDICGVTIRQGE 303
>3oo3_A OXY protein; cytochrome P450, monooxygenase, PCD-teicoplanin
aglycone, oxidoreductase; HET: HEM; 2.20A {Actinoplanes
teichomyceticus} PDB: 3o1a_A*
Length = 384
Score = 44.9 bits (107), Expect = 4e-06
Identities = 21/119 (17%), Positives = 35/119 (29%), Gaps = 32/119 (26%)
Query: 69 DLQEELGEAHLDEL----------GLFNIAGIETLTTAFSAVIFLLSMHPEVQAKVYDEL 118
+ + H E+ G I E + + + LL HP+ A + ++
Sbjct: 198 GMIGVIVREHGAEISDEELAGLAEGNL-IMAAEQMAAQLAVAVLLLVTHPDQMALLREK- 255
Query: 119 ISIIGEDFHKKPSLSELENLKYLDMVIKESLRLYPPAYVAPRR-ATEDIHIGEFTIPKG 176
P L +D +E LR R A D+ + I G
Sbjct: 256 -----------PEL--------IDSATEEVLRHASIVEAPAPRVALADVRMAGRDIHAG 295
>1ued_A P450 OXYC, P450 monooxygenase; cytochrome P450 vancomycin
biosynthesis, oxidoreductase; HET: HEM PG4; 1.90A
{Amycolatopsis orientalis} SCOP: a.104.1.1
Length = 406
Score = 44.9 bits (107), Expect = 4e-06
Identities = 20/119 (16%), Positives = 35/119 (29%), Gaps = 32/119 (26%)
Query: 69 DLQEELGEAHLDEL----------GLFNIAGIETLTTAFSAVIFLLSMHPEVQAKVYDEL 118
L + H D + L + G+ET+ + L +P +++
Sbjct: 217 GLLGMIVRDHGDNVTDEELKGLCTALI-LGGVETVAGMIGFGVLALLDNPGQIELLFES- 274
Query: 119 ISIIGEDFHKKPSLSELENLKYLDMVIKESLRLYPPAYVAPRR-ATEDIHIGEFTIPKG 176
P + V+ E +R P R A +D+ I I G
Sbjct: 275 -----------PEK--------AERVVNELVRYLSPVQAPNPRLAIKDVVIDGQLIKAG 314
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide
monooxygenase, antibiotic biosynthesis, heme, iron,
metal-binding; HET: HEM PXI; 1.7A {Streptomyces
venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A*
2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Length = 436
Score = 44.2 bits (105), Expect = 6e-06
Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 21/92 (22%)
Query: 87 IAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKKPSLSELENLKYLDMVIK 146
+AG ET + ++ L HP+ A + + +L LD ++
Sbjct: 262 VAGHETTVNLIANGMYALLSHPDQLAALRAD------------MTL--------LDGAVE 301
Query: 147 ESLRLYPPAYVAPRR-ATEDIHIGEFTIPKGT 177
E LR P A R E + + IP G
Sbjct: 302 EMLRYEGPVESATYRFPVEPVDLDGTVIPAGD 333
>2wm5_A CYP124, putative cytochrome P450 124; metal-binding,
oxidoreductase, omega-hydroxylation, iron, heme, fatty
acid, monooxygenase; HET: HEM; 1.50A {Mycobacterium
tuberculosis} PDB: 2wm4_A*
Length = 435
Score = 44.2 bits (105), Expect = 7e-06
Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 23/101 (22%)
Query: 80 DELGLFNI----AGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKKPSLSEL 135
E+ F I AG ET A + + LS +PE + + + + L
Sbjct: 262 REIASFFILLVVAGNETTRNAITHGVLALSRYPEQRDRWWSDF-----------DGL--- 307
Query: 136 ENLKYLDMVIKESLRLYPPAYVAPRRATEDIHIGEFTIPKG 176
++E +R P R T+DI + + G
Sbjct: 308 -----APTAVEEIVRWASPVVYMRRTLTQDIELRGTKMAAG 343
>1gwi_A CYP154C1, cytochrome P450 154C1; oxidoreductase, macrolide
antibiotics, 12- and 14- carbon macrolactone
monooxygenase, heme; HET: HEM; 1.92A {Streptomyces
coelicolor} SCOP: a.104.1.1
Length = 411
Score = 44.1 bits (105), Expect = 8e-06
Identities = 24/91 (26%), Positives = 34/91 (37%), Gaps = 21/91 (23%)
Query: 87 IAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKKPSLSELENLKYLDMVIK 146
AG ET + + LS HPE +A V + V++
Sbjct: 241 AAGHETTISLIVNAVVNLSTHPEQRALVLSG------------EAE--------WSAVVE 280
Query: 147 ESLRLYPPAYVAPRR-ATEDIHIGEFTIPKG 176
E+LR P R A ED+ +G+ IP G
Sbjct: 281 ETLRFSTPTSHVLIRFAAEDVPVGDRVIPAG 311
>3b4x_A 367AA long hypothetical cytochrome P450; HEM protein, heme, iron,
metal-binding, monooxygenase, oxidoreductase; HET: HEM;
1.94A {Sulfolobus tokodaii} PDB: 1ue8_A*
Length = 367
Score = 43.7 bits (104), Expect = 9e-06
Identities = 24/114 (21%), Positives = 40/114 (35%), Gaps = 29/114 (25%)
Query: 69 DLQEELGEAHLDE------LGLFNIAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISII 122
DL ++ ++L E L IAG ET T I +++ V ++
Sbjct: 185 DLTGKIANSNLSELEKEGYFILLMIAGNETTTNLIGNAIEDFTLYNS-WDYVREK----- 238
Query: 123 GEDFHKKPSLSELENLKYLDMVIKESLRLYPPAYVAPRRATEDIHIGEFTIPKG 176
+L ++E+LR PP R E + I + I +G
Sbjct: 239 -------GALK----------AVEEALRFSPPVMRTIRVTKEKVKIRDQVIDEG 275
>3mgx_A Putative P450 monooxygenase; cytochrome P450 oxidase, HAEM protein,
vancomycin biosynthes carrier protein, oxidoreductase;
HET: HEM; 2.10A {Amycolatopsis balhimycina}
Length = 415
Score = 43.8 bits (104), Expect = 9e-06
Identities = 27/120 (22%), Positives = 43/120 (35%), Gaps = 30/120 (25%)
Query: 63 DDI--KLADLQEELGEAHLDELGLFN----IAGIETLTTAFSAVIFLLSMHPEVQAKVYD 116
DD+ L ++L D++ L I G ET A + + L+ P + + D
Sbjct: 227 DDLVSTLVT-DDDLTI---DDVLLNCDNVLIGGNETTRHAITGAVHALATVPGLLTALRD 282
Query: 117 ELISIIGEDFHKKPSLSELENLKYLDMVIKESLRLYPPAYVAPRRATEDIHIGEFTIPKG 176
+ +D V++E LR PA R T D+ I +P G
Sbjct: 283 G------------SAD--------VDTVVEEVLRWTSPAMHVLRVTTADVTINGRDLPSG 322
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox
oxidoreductase; HET: HEM; 1.75A {Pseudonocardia
autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A*
Length = 411
Score = 43.0 bits (102), Expect = 2e-05
Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 21/92 (22%)
Query: 87 IAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKKPSLSELENLKYLDMVIK 146
IAG ET + L HP+ + + ++ PSL + ++
Sbjct: 235 IAGHETTVNLIGNGVLALLTHPDQRKLLAED------------PSL--------ISSAVE 274
Query: 147 ESLRLYPPAYVAPRR-ATEDIHIGEFTIPKGT 177
E LR P AP R ED+ TIP G
Sbjct: 275 EFLRFDSPVSQAPIRFTAEDVTYSGVTIPAGE 306
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2,
anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A
{Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A*
2d0e_A* 1t93_A* 2d09_A* 3tzo_A*
Length = 406
Score = 42.6 bits (101), Expect = 2e-05
Identities = 25/123 (20%), Positives = 37/123 (30%), Gaps = 32/123 (26%)
Query: 63 DDIKLADLQEELGEAHLDE-------LGLFNIAGIETLTTAFSAVIFLLSMHPEVQAKVY 115
+D+ + L +G + + L I G T + LL PE+ ++
Sbjct: 212 EDV-TSLLGAAVGRDEITLSEAVGLAVLLQ-IGGEAV-TNNSGQMFHLLLSRPELAERLR 268
Query: 116 DELISIIGEDFHKKPSLSELENLKYLDMVIKESLRLYPPAYVA--PRRATEDIHIGEFTI 173
E P + I E LR P R A ED+ I I
Sbjct: 269 SE------------PEI--------RPRAIDELLRWIPHRNAVGLSRIALEDVEIKGVRI 308
Query: 174 PKG 176
G
Sbjct: 309 RAG 311
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans}
Length = 450
Score = 42.7 bits (101), Expect = 2e-05
Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 20/90 (22%)
Query: 87 IAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKKPSLSELENLKYLDMVIK 146
AG +T + + + L+ P++ A+V + +L L +++
Sbjct: 288 SAGHDTTSASSAGAALALARDPDLFARVKAD------------RNL--------LPGIVE 327
Query: 147 ESLRLYPPAYVAPRRATEDIHIGEFTIPKG 176
E++R P R A D + I G
Sbjct: 328 EAIRWTTPVQHFMRTAATDTELCGQKIAAG 357
>3p3o_A Cytochrome P450; monooxygenase, oxidoreductase; HET: HEM; 1.54A
{Streptomyces thioluteus} PDB: 3p3x_A* 3p3z_A* 3p3l_A*
Length = 416
Score = 42.6 bits (101), Expect = 2e-05
Identities = 22/93 (23%), Positives = 33/93 (35%), Gaps = 21/93 (22%)
Query: 87 IAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKKPSLSELENLKYLDMVIK 146
+AG ET + ++ + HP+ K+ + P L ++
Sbjct: 252 VAGYETTNHQLALAMYDFAQHPDQWMKIKEN------------PEL--------APQAVE 291
Query: 147 ESLRLYPPAYVAPRR-ATEDIHIGEFTIPKGTL 178
E LR P V R A ED + IP GT
Sbjct: 292 EVLRWSPTLPVTATRVAAEDFEVNGVRIPTGTP 324
>2dkk_A Cytochrome P450; CYP158A1, INHI oxidoreductase; HET: HEM; 1.97A
{Streptomyces coelicolor} PDB: 2nz5_A* 2nza_A*
Length = 411
Score = 42.3 bits (100), Expect = 3e-05
Identities = 22/123 (17%), Positives = 36/123 (29%), Gaps = 32/123 (26%)
Query: 63 DDIKLADLQEELGEAHLDE-------LGLFNIAGIETLTTAFSAVIFLLSMHPEVQAKVY 115
D+ + L +G + E L I G T +++LL E+ A++
Sbjct: 215 GDV-YSMLGAAVGRGEVGETEAVGLAGPLQ-IGGEAV-THNVGQMLYLLLTRRELMARMR 271
Query: 116 DELISIIGEDFHKKPSLSELENLKYLDMVIKESLRLYPPAYVA--PRRATEDIHIGEFTI 173
+ P + E LR R A ED+ + I
Sbjct: 272 ER------------PGA--------RGTALDELLRWISHRTSVGLARIALEDVEVHGTRI 311
Query: 174 PKG 176
G
Sbjct: 312 AAG 314
>1cpt_A Cytochrome P450-TERP; oxidoreductase(oxygenase); HET: HEM; 2.30A
{Pseudomonas SP} SCOP: a.104.1.1
Length = 428
Score = 42.3 bits (100), Expect = 3e-05
Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 20/90 (22%)
Query: 87 IAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKKPSLSELENLKYLDMVIK 146
AG +T +++ I LS +PE A + P+L + ++
Sbjct: 266 TAGHDTTSSSSGGAIIGLSRNPEQLALAKSD------------PAL--------IPRLVD 305
Query: 147 ESLRLYPPAYVAPRRATEDIHIGEFTIPKG 176
E++R P R A D + I +G
Sbjct: 306 EAVRWTAPVKSFMRTALADTEVRGQNIKRG 335
>3rwl_A Cytochrome P450 alkane hydroxylase 1 CYP153A7; P450 monooxygenase,
oxidoreductase; HET: HEM; 2.00A {Sphingopyxis
macrogoltabida}
Length = 426
Score = 41.9 bits (99), Expect = 4e-05
Identities = 20/113 (17%), Positives = 38/113 (33%), Gaps = 27/113 (23%)
Query: 68 ADLQEELGEAHLDELGLF----NIAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIG 123
+ + +E + G +T + + + L +P+ AK+
Sbjct: 244 SPATRNMTP---EEYLGNVLLLIVGGNDTTRNSMTGGVLALHKNPDQFAKLKAN------ 294
Query: 124 EDFHKKPSLSELENLKYLDMVIKESLRLYPPAYVAPRRATEDIHIGEFTIPKG 176
P+L ++ ++ E +R P R A D +G TI KG
Sbjct: 295 ------PAL--------VETMVPEIIRWQTPLAHMRRTAIADSELGGKTIRKG 333
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis;
HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB:
2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Length = 417
Score = 41.9 bits (99), Expect = 4e-05
Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 30/123 (24%)
Query: 63 DDI--KLADLQEELGEAHLDEL-----GLFNIAGIETLTTAFSAVIFLLSMHPEVQAKVY 115
DD+ L +++ EL GL +AG E+ TT + ++LL PE++ ++
Sbjct: 223 DDLVSALVQARDQQDSLSEQELLDLAIGLL-VAGYESTTTQIADFVYLLMTRPELRRQLL 281
Query: 116 DELISIIGEDFHKKPSLSELENLKYLDMVIKESLRLYPP--AYVAPRRATEDIHIGEFTI 173
D P L + ++E R P PR A ED+ + TI
Sbjct: 282 DR------------PEL--------IPSAVEELTRWVPLGVGTAFPRYAVEDVTLRGVTI 321
Query: 174 PKG 176
G
Sbjct: 322 RAG 324
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase,
heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A
{Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A*
1pkf_A*
Length = 419
Score = 41.9 bits (99), Expect = 4e-05
Identities = 28/123 (22%), Positives = 40/123 (32%), Gaps = 29/123 (23%)
Query: 63 DDIKLADL-QEELGEAHL--DEL----GLFNIAGIETLTTAFSAVIFLLSMHPEVQAKVY 115
+D+ L L Q E + L EL G AG +T + + L PE V
Sbjct: 223 NDV-LTMLLQAEADGSRLSTKELVALVGAIIAAGTDTTIYLIAFAVLNLLRSPEALELVK 281
Query: 116 DELISIIGEDFHKKPSLSELENLKYLDMVIKESLRLYPPAYVAPRR-ATEDIHIGEFTIP 174
E P L + + E LR + R A +D+ +I
Sbjct: 282 AE------------PGL--------MRNALDEVLRFDNILRIGTVRFARQDLEYCGASIK 321
Query: 175 KGT 177
KG
Sbjct: 322 KGE 324
>3ivy_A Cytochrome P450 CYP125; cholesterol, monooxygenase, H iron,
metal-binding, oxidoreductase; HET: HEM; 1.35A
{Mycobacterium tuberculosis} PDB: 3iw0_A* 3iw1_A*
3iw2_A* 2x5w_A* 2x5l_A* 2xc3_A* 2xn8_A*
Length = 433
Score = 41.5 bits (98), Expect = 5e-05
Identities = 19/101 (18%), Positives = 28/101 (27%), Gaps = 26/101 (25%)
Query: 80 DELGLFNI----AGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKKPSLSEL 135
DE G F + AG ET + + + + HP+
Sbjct: 256 DEFGFFVVMLAVAGNETTRNSITQGMMAFAEHPDQWELYKKVRP---------------- 299
Query: 136 ENLKYLDMVIKESLRLYPPAYVAPRRATEDIHIGEFTIPKG 176
+ E +R P R A D + I KG
Sbjct: 300 ------ETAADEIVRWATPVTAFQRTALRDYELSGVQIKKG 334
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 40.3 bits (93), Expect = 6e-05
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 14/39 (35%)
Query: 128 KKPSLSELENLKYLDMVIKESLRLYPPAYVAPR---RAT 163
+K +L +L+ SL+LY AP +AT
Sbjct: 18 EKQALKKLQA----------SLKLYADD-SAPALAIKAT 45
>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase,
oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus}
PDB: 2rfc_A*
Length = 343
Score = 41.0 bits (97), Expect = 9e-05
Identities = 22/91 (24%), Positives = 32/91 (35%), Gaps = 24/91 (26%)
Query: 87 IAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKKPSLSELENLKYLDMVIK 146
I G ET T +I ++ +P++ S ++
Sbjct: 187 IGGNETTTNLIGNMIRVIDENPDIIDDALKN------------RSG-----------FVE 223
Query: 147 ESLRLYPPAYVAPRR-ATEDIHIGEFTIPKG 176
E+LR Y P P R A ED +I I KG
Sbjct: 224 ETLRYYSPIQFLPHRFAAEDSYINNKKIKKG 254
>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase;
HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP:
a.104.1.1
Length = 408
Score = 40.3 bits (95), Expect = 1e-04
Identities = 31/121 (25%), Positives = 41/121 (33%), Gaps = 28/121 (23%)
Query: 58 RDSTLDDIKLADLQEELGEAHLDELGLFNIAGIETLTTAFSAVIFLLSMHPEVQAKVYDE 117
RD D +L+ EEL D L L AG ET + L P+ A V
Sbjct: 218 RDDEGDGDRLSP--EEL----RDTLLLMISAGYETTVNVIDQAVHTLLTRPDQLALVRKG 271
Query: 118 LISIIGEDFHKKPSLSELENLKYLDMVIKESLRLYPPAYVAPRR-ATEDIHIGE-FTIPK 175
V++E+LR P P R A DI + + TI +
Sbjct: 272 ------------EVT--------WADVVEETLRHEPAVKHLPLRYAVTDIALPDGRTIAR 311
Query: 176 G 176
G
Sbjct: 312 G 312
>2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1,
possible sugar phosphatase, structural genomics; HET:
MSE EPE; 2.10A {Cytophaga hutchinsonii}
Length = 284
Score = 32.6 bits (75), Expect = 0.055
Identities = 7/49 (14%), Positives = 16/49 (32%), Gaps = 7/49 (14%)
Query: 77 AHLDELGLFNIAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGED 125
+LGLF+I + +++ ++ V +G
Sbjct: 65 DSYHKLGLFSITADKIISSGMITKEYIDLKVD--GGIVA-----YLGTA 106
>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural
genomics, NYSGXRC, NEW YORK SGX research center for
structural genomics, PSI-2; 1.72A {Homo sapiens} PDB:
2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A*
Length = 306
Score = 30.7 bits (70), Expect = 0.20
Identities = 8/52 (15%), Positives = 16/52 (30%), Gaps = 8/52 (15%)
Query: 77 AHLDELGLFNIAGIETLTTAFSAVIFLLSMHPEV---QAKVYDELISIIGED 125
LG + + ++A A L P V+ ++G +
Sbjct: 72 LRFARLGFGGLRAEQLFSSALCAARLLRQRLPGPPDAPGAVF-----VLGGE 118
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 0.56
Identities = 39/243 (16%), Positives = 68/243 (27%), Gaps = 79/243 (32%)
Query: 5 KDIFSL---FRESIKSVLTQIKCLERFTAFQSKKTILETVTKM-----------GMVNFF 50
DI +L + + L + K L + ++ K G
Sbjct: 99 NDIHALAAKLLQENDTTLVKTKELIK-NYITARIMAKRPFDKKSNSALFRAVGEGNAQLV 157
Query: 51 VT----GHSDH-----RD------STLDDI--KLADLQEELGEAHLDELGLF----NIA- 88
G++D RD + D+ A+ EL LD +F NI
Sbjct: 158 AIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE 217
Query: 89 ---------GIETLTTA-FSA-VIFLLSM-HPEVQAKVYD----ELISII---------- 122
+ L + S +I ++ + H V AK+ EL S +
Sbjct: 218 WLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL 277
Query: 123 -----------GEDFHKKPSLSELENLKYLDMVIKESLRLYPPAYVAPRRATEDIHIGEF 171
E F + L ++ + YP + P + + E
Sbjct: 278 VTAVAIAETDSWESFFVS-VRKAITVLFFIGV---RCYEAYPNTSLPPSILEDSLENNE- 332
Query: 172 TIP 174
+P
Sbjct: 333 GVP 335
>3apg_A Beta-glucosidase; TIM barrel, hydrolase, sugar binding, hydrolysis;
2.35A {Pyrococcus furiosus}
Length = 473
Score = 28.8 bits (65), Expect = 0.98
Identities = 7/28 (25%), Positives = 9/28 (32%), Gaps = 1/28 (3%)
Query: 153 PPAYVAPRRATEDIHIGEFTIPKGTLDF 180
V R +D KG LD+
Sbjct: 276 YKDEVEEIRK-KDYEFVTILHSKGKLDW 302
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory
domain, oxidized form, transcription; 2.30A {Escherichia
coli} SCOP: c.94.1.1 PDB: 1i69_A
Length = 219
Score = 27.2 bits (61), Expect = 2.5
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 49 FFVTGHSDHRDSTLDDIKLADLQEE----LGEAH 78
+ + DH + + + +ADL E L + H
Sbjct: 79 MLLAIYEDHPWANREAVPMADLAGEKLLMLEDGH 112
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type
transcriptional regulator, LTTR, redox, structural
genomics, OPPF; 2.39A {Neisseria meningitidis}
Length = 219
Score = 26.9 bits (60), Expect = 3.2
Identities = 11/34 (32%), Positives = 13/34 (38%), Gaps = 4/34 (11%)
Query: 49 FFVTGHSDHRDSTLDDIKLADLQEE----LGEAH 78
FFV H LD + L EE L E +
Sbjct: 78 FFVIVPKGHSFEELDAVSPRMLGEEQVLLLTEGN 111
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio
regulation; 1.58A {Porphyromonas gingivalis}
Length = 232
Score = 26.9 bits (60), Expect = 3.7
Identities = 6/34 (17%), Positives = 9/34 (26%), Gaps = 4/34 (11%)
Query: 49 FFVTGHSDHRDSTLDDIKLADLQEE----LGEAH 78
F D I+ ++ L E H
Sbjct: 85 FLGYVSRCEPLFEQDVIRTTEVNPHRLWLLDEGH 118
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme
biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4
cluster; HET: SAM; 2.07A {Escherichia coli} SCOP:
c.1.28.2
Length = 457
Score = 26.1 bits (58), Expect = 7.3
Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 125 DFHKKPSLSELENLKYLDMVIKESLRLYPPAYVAPRRATEDIHIG 169
+K + + + +YLD + +E + A + R +H G
Sbjct: 70 GCNKIVTRQQHKADQYLDALEQE-IVHR--APLFAGRHVSQLHWG 111
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A
{Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A*
2bgm_A*
Length = 278
Score = 26.0 bits (58), Expect = 7.3
Identities = 4/17 (23%), Positives = 11/17 (64%)
Query: 67 LADLQEELGEAHLDELG 83
+AD+ ++ G+ + +G
Sbjct: 45 IADIADDHGQKVCNNIG 61
>4ayb_B DNA-directed RNA polymerase; transferase, multi-subunit,
transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_B
2y0s_B 2waq_B 4b1o_B 4b1p_R 2pmz_B 3hkz_B
Length = 1131
Score = 26.0 bits (57), Expect = 8.3
Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 5/49 (10%)
Query: 10 LFRESIKSVLTQI-----KCLERFTAFQSKKTILETVTKMGMVNFFVTG 53
LFR + K+ + + K R K + + + + TG
Sbjct: 356 LFRVAFKAFVKDLTYQLEKSKVRGRKLALKALVRPDIVTERIRHALATG 404
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas
mycobacterium avium, structural genomics; 2.00A
{Mycobacterium avium}
Length = 281
Score = 25.7 bits (57), Expect = 9.1
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 67 LADLQEELGEAHLDELG 83
+ADL E G+A DELG
Sbjct: 59 IADLAAEKGKALADELG 75
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.386
Gapped
Lambda K H
0.267 0.0762 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,682,779
Number of extensions: 154898
Number of successful extensions: 693
Number of sequences better than 10.0: 1
Number of HSP's gapped: 595
Number of HSP's successfully gapped: 98
Length of query: 180
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 92
Effective length of database: 4,244,745
Effective search space: 390516540
Effective search space used: 390516540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.5 bits)