RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17785
         (180 letters)



>d1tqna_ a.104.1.1 (A:) Mammalian cytochrome P450 3a4 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 472

 Score = 57.8 bits (138), Expect = 7e-11
 Identities = 31/101 (30%), Positives = 55/101 (54%), Gaps = 2/101 (1%)

Query: 76  EAHLDELGLFNIAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKKPSLSEL 135
              + +  +F  AG ET ++  S +++ L+ HP+VQ K+ +E+ +++            +
Sbjct: 266 LELVAQSIIFIFAGYETTSSVLSFIMYELATHPDVQQKLQEEIDAVLPNKAPPTYD--TV 323

Query: 136 ENLKYLDMVIKESLRLYPPAYVAPRRATEDIHIGEFTIPKG 176
             ++YLDMV+ E+LRL+P A    R   +D+ I    IPKG
Sbjct: 324 LQMEYLDMVVNETLRLFPIAMRLERVCKKDVEINGMFIPKG 364


>d3czha1 a.104.1.1 (A:40-502) Vitamin D 25-hydroxylase Cyp2R1 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 463

 Score = 50.9 bits (120), Expect = 1e-08
 Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 7/132 (5%)

Query: 50  FVTGHSDHRDSTLDDIKLADLQEELGEAHLDELGLFNIAGIETLTTAFSAVIFLLSMHPE 109
           FV  + D  D   +D      +E L  +  +      IAG ET T      I  ++++P 
Sbjct: 237 FVDAYLDEMDQGKNDPSSTFSKENLIFSVGE----LIIAGTETTTNVLRWAILFMALYPN 292

Query: 110 VQAKVYDELISIIGEDFHKKPSLSELENLKYLDMVIKESLRLYPPAYVA-PRRATEDIHI 168
           +Q +V  E+  I+G +   KPS  +   + Y + V+ E LR      +      +ED  +
Sbjct: 293 IQGQVQKEIDLIMGPNG--KPSWDDKCKMPYTEAVLHEVLRFCNIVPLGIFHATSEDAVV 350

Query: 169 GEFTIPKGTLDF 180
             ++IPKGT   
Sbjct: 351 RGYSIPKGTTVI 362


>d1r9oa_ a.104.1.1 (A:) Mammalian cytochrome p450 2c9 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 467

 Score = 29.3 bits (64), Expect = 0.23
 Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 3/100 (3%)

Query: 78  HLDELGLFNIAGIETLTTAFSAVIFLLSMHPEVQAKVYDELISIIGEDFHKKPSLSELEN 137
             +       AG ET +T     + LL  HPEV AKV +E+  +IG +    P + +  +
Sbjct: 262 LENTAVDLFGAGTETTSTTLRYALLLLLKHPEVTAKVQEEIERVIGRNRS--PCMQDRSH 319

Query: 138 LKYLDMVIKESLRL-YPPAYVAPRRATEDIHIGEFTIPKG 176
           + Y D V+ E  R         P   T DI    + IPKG
Sbjct: 320 MPYTDAVVHEVQRYIDLLPTSLPHAVTCDIKFRNYLIPKG 359


>d1r4xa2 d.105.1.2 (A:763-873) Coatomer gamma subunit, C-terminal
           subdomain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 111

 Score = 25.9 bits (57), Expect = 1.5
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 72  EELGEAHLDELGLFNIAGIETLTTAFSAVIFLLSMHP 108
           +E+G+   ++   F ++ I+TL  A   ++  L MHP
Sbjct: 15  DEVGDEF-EKEETFTLSTIKTLEEAVGNIVKFLGMHP 50


>d1td6a_ a.234.1.1 (A:) Hypothetical protein MPN330 {Mycoplasma
           pneumoniae [TaxId: 2104]}
          Length = 286

 Score = 25.7 bits (56), Expect = 3.2
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 115 YDELISIIGEDFHKKPSLSELENLKYLDMVIKESLRLYPPAYVA 158
           +++LI+ I + F K+P  +E  N + +D  +     L+PP  +A
Sbjct: 203 FEQLITQIQQLFLKEPVNAEFAN-EIIDAFLVSYFPLHPPVPLA 245


>d1uz5a2 b.103.1.1 (A:5-180) Molybdenum cofactor biosynthesis
           protein MoeA, N-terminal and linker domains {Archaeon
           Pyrococcus horikoshii, PH0582 [TaxId: 53953]}
          Length = 176

 Score = 25.2 bits (54), Expect = 4.0
 Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 2/44 (4%)

Query: 135 LENLKYLDMVIKESLRLYPPAYVAPRRATEDIHIGEFTIPKGTL 178
            E+++ ++  I      YP   V   +   DI  G   + KG  
Sbjct: 113 FEDVERVNGEILIYKPAYPGLGV--MKKGIDIEKGRLLVKKGER 154


>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
          domain {Methanococcus maripaludis [TaxId: 39152]}
          Length = 179

 Score = 25.1 bits (53), Expect = 4.9
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 47 VNFFVTGHSDHRDSTLDD 64
          +N  + GH DH  +TL  
Sbjct: 6  INLGIFGHIDHGKTTLSK 23


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.138    0.386 

Gapped
Lambda     K      H
   0.267   0.0393    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 637,971
Number of extensions: 28133
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 20
Length of query: 180
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 100
Effective length of database: 1,309,196
Effective search space: 130919600
Effective search space used: 130919600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)