BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17788
(365 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3E08|A Chain A, H55s Mutant Xanthomonas Campestris Tryptophan 2,3-
Dioxygenase
pdb|3E08|B Chain B, H55s Mutant Xanthomonas Campestris Tryptophan 2,3-
Dioxygenase
pdb|3E08|C Chain C, H55s Mutant Xanthomonas Campestris Tryptophan 2,3-
Dioxygenase
pdb|3E08|D Chain D, H55s Mutant Xanthomonas Campestris Tryptophan 2,3-
Dioxygenase
pdb|3E08|E Chain E, H55s Mutant Xanthomonas Campestris Tryptophan 2,3-
Dioxygenase
pdb|3E08|F Chain F, H55s Mutant Xanthomonas Campestris Tryptophan 2,3-
Dioxygenase
pdb|3E08|G Chain G, H55s Mutant Xanthomonas Campestris Tryptophan 2,3-
Dioxygenase
pdb|3E08|H Chain H, H55s Mutant Xanthomonas Campestris Tryptophan 2,3-
Dioxygenase
Length = 298
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 9/71 (12%)
Query: 87 DELLQNGEPVS-PDGFDRML-LGQPNNSELWVKYMAY-------HLQATEIEKARSIARR 137
D+LL +P+S P D ML + Q SELW+K +A+ HLQ E+ + R + R
Sbjct: 31 DQLLSAQQPLSEPAHHDEMLFIIQSQTSELWLKLLAHELRAAIVHLQRDEVWQCRKVLAR 90
Query: 138 ALTVINIRNEE 148
+ V+ E+
Sbjct: 91 SKQVLRQLTEQ 101
>pdb|3BK9|A Chain A, H55a Mutant Of Tryptophan 2,3-Dioxygenase From Xanthomonas
Campestris
pdb|3BK9|B Chain B, H55a Mutant Of Tryptophan 2,3-Dioxygenase From Xanthomonas
Campestris
pdb|3BK9|C Chain C, H55a Mutant Of Tryptophan 2,3-Dioxygenase From Xanthomonas
Campestris
pdb|3BK9|D Chain D, H55a Mutant Of Tryptophan 2,3-Dioxygenase From Xanthomonas
Campestris
pdb|3BK9|E Chain E, H55a Mutant Of Tryptophan 2,3-Dioxygenase From Xanthomonas
Campestris
pdb|3BK9|F Chain F, H55a Mutant Of Tryptophan 2,3-Dioxygenase From Xanthomonas
Campestris
pdb|3BK9|G Chain G, H55a Mutant Of Tryptophan 2,3-Dioxygenase From Xanthomonas
Campestris
pdb|3BK9|H Chain H, H55a Mutant Of Tryptophan 2,3-Dioxygenase From Xanthomonas
Campestris
Length = 306
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 9/71 (12%)
Query: 87 DELLQNGEPVS-PDGFDRML-LGQPNNSELWVKYMAY-------HLQATEIEKARSIARR 137
D+LL +P+S P D ML + Q SELW+K +A+ HLQ E+ + R + R
Sbjct: 31 DQLLSAQQPLSEPAHHDEMLFIIQAQTSELWLKLLAHELRAAIVHLQRDEVWQCRKVLAR 90
Query: 138 ALTVINIRNEE 148
+ V+ E+
Sbjct: 91 SKQVLRQLTEQ 101
>pdb|2NW7|A Chain A, Crystal Structure Of Tryptophan 2,3-Dioxygenase (Tdo) From
Xanthomonas Campestris In Complex With Ferric Heme.
Northeast Structural Genomics Target Xcr13
pdb|2NW7|B Chain B, Crystal Structure Of Tryptophan 2,3-Dioxygenase (Tdo) From
Xanthomonas Campestris In Complex With Ferric Heme.
Northeast Structural Genomics Target Xcr13
pdb|2NW7|C Chain C, Crystal Structure Of Tryptophan 2,3-Dioxygenase (Tdo) From
Xanthomonas Campestris In Complex With Ferric Heme.
Northeast Structural Genomics Target Xcr13
pdb|2NW7|D Chain D, Crystal Structure Of Tryptophan 2,3-Dioxygenase (Tdo) From
Xanthomonas Campestris In Complex With Ferric Heme.
Northeast Structural Genomics Target Xcr13
pdb|2NW9|A Chain A, Crystal Structure Of Tryptophan 2,3-Dioxygenase (Tdo) From
Xanthomonas Campestris In Complex With Ferrous Heme And
6-Fluoro-Tryptophan. Northeast Structural Genomics
Target Xcr13
pdb|2NW9|B Chain B, Crystal Structure Of Tryptophan 2,3-Dioxygenase (Tdo) From
Xanthomonas Campestris In Complex With Ferrous Heme And
6-Fluoro-Tryptophan. Northeast Structural Genomics
Target Xcr13
pdb|2NW8|A Chain A, Crystal Structure Of Tryptophan 2,3-Dioxygenase (Tdo) From
Xanthomonas Campestris In Complex With Ferrous Heme And
Tryptophan. Northeast Structural Genomics Target Xcr13.
pdb|2NW8|B Chain B, Crystal Structure Of Tryptophan 2,3-Dioxygenase (Tdo) From
Xanthomonas Campestris In Complex With Ferrous Heme And
Tryptophan. Northeast Structural Genomics Target Xcr13
Length = 306
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 9/71 (12%)
Query: 87 DELLQNGEPVS-PDGFDRML-LGQPNNSELWVKYMAY-------HLQATEIEKARSIARR 137
D+LL +P+S P D ML + Q SELW+K +A+ HLQ E+ + R + R
Sbjct: 31 DQLLSAQQPLSEPAHHDEMLFIIQHQTSELWLKLLAHELRAAIVHLQRDEVWQCRKVLAR 90
Query: 138 ALTVINIRNEE 148
+ V+ E+
Sbjct: 91 SKQVLRQLTEQ 101
>pdb|2NOX|A Chain A, Crystal Structure Of Tryptophan 2,3-dioxygenase From
Ralstonia Metallidurans
pdb|2NOX|B Chain B, Crystal Structure Of Tryptophan 2,3-dioxygenase From
Ralstonia Metallidurans
pdb|2NOX|C Chain C, Crystal Structure Of Tryptophan 2,3-dioxygenase From
Ralstonia Metallidurans
pdb|2NOX|D Chain D, Crystal Structure Of Tryptophan 2,3-dioxygenase From
Ralstonia Metallidurans
pdb|2NOX|E Chain E, Crystal Structure Of Tryptophan 2,3-dioxygenase From
Ralstonia Metallidurans
pdb|2NOX|F Chain F, Crystal Structure Of Tryptophan 2,3-dioxygenase From
Ralstonia Metallidurans
pdb|2NOX|G Chain G, Crystal Structure Of Tryptophan 2,3-dioxygenase From
Ralstonia Metallidurans
pdb|2NOX|H Chain H, Crystal Structure Of Tryptophan 2,3-dioxygenase From
Ralstonia Metallidurans
pdb|2NOX|I Chain I, Crystal Structure Of Tryptophan 2,3-dioxygenase From
Ralstonia Metallidurans
pdb|2NOX|J Chain J, Crystal Structure Of Tryptophan 2,3-dioxygenase From
Ralstonia Metallidurans
pdb|2NOX|K Chain K, Crystal Structure Of Tryptophan 2,3-dioxygenase From
Ralstonia Metallidurans
pdb|2NOX|L Chain L, Crystal Structure Of Tryptophan 2,3-dioxygenase From
Ralstonia Metallidurans
pdb|2NOX|M Chain M, Crystal Structure Of Tryptophan 2,3-dioxygenase From
Ralstonia Metallidurans
pdb|2NOX|N Chain N, Crystal Structure Of Tryptophan 2,3-dioxygenase From
Ralstonia Metallidurans
pdb|2NOX|O Chain O, Crystal Structure Of Tryptophan 2,3-dioxygenase From
Ralstonia Metallidurans
pdb|2NOX|P Chain P, Crystal Structure Of Tryptophan 2,3-dioxygenase From
Ralstonia Metallidurans
Length = 281
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 87 DELLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQAT 126
D++L P+SPD + + + Q +ELW+K M + L+A
Sbjct: 32 DQILSAQHPLSPDHNEMLFIVQHQTTELWMKLMLHELRAA 71
>pdb|1I1R|B Chain B, Crystal Structure Of A CytokineRECEPTOR COMPLEX
Length = 181
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 97 SPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVI 142
SP FDR LLG+ + WV++ A + +EK A R L I
Sbjct: 126 SPPKFDRGLLGRLQGLKYWVRHFASFYVLSAMEKFAGQAVRVLDSI 171
>pdb|1YD7|A Chain A, Conserved Hypothetical Protein Pfu-1647980-001 From
Pyrococcus Furiosus
Length = 395
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 13/112 (11%)
Query: 118 YMAYHLQATEIEKARS--IARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLH 175
Y Y L+ EI + +AR AL + EE + LL +E ++ L E +
Sbjct: 284 YETYELEDAEIGVVATGIVARSALRAVKXLREE---GIKAGLLKIETIWPFDFELIERIA 340
Query: 176 EAVRCNDETKVYM---NMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIY 224
E V K+Y+ N+ ++Y + + ++ VKL+ K G+ H+ I+
Sbjct: 341 ERV-----DKLYVPEXNLGQLYHLIKEGANGKAEVKLISKIGGEVHTPXEIF 387
>pdb|1YW0|A Chain A, Crystal Structure Of The Tryptophan 2,3-Dioxygenase From
Xanthomonas Campestris. Northeast Structural Genomics
Target Xcr13.
pdb|1YW0|B Chain B, Crystal Structure Of The Tryptophan 2,3-Dioxygenase From
Xanthomonas Campestris. Northeast Structural Genomics
Target Xcr13.
pdb|1YW0|C Chain C, Crystal Structure Of The Tryptophan 2,3-Dioxygenase From
Xanthomonas Campestris. Northeast Structural Genomics
Target Xcr13.
pdb|1YW0|D Chain D, Crystal Structure Of The Tryptophan 2,3-Dioxygenase From
Xanthomonas Campestris. Northeast Structural Genomics
Target Xcr13
Length = 276
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Query: 87 DELLQNGEPVS-PDGFDR-MLLGQPNNSELWVKYMAY-------HLQATEIEKARSIARR 137
D+LL +P+S P D + + Q SELW+K +A+ HLQ E+ + R + R
Sbjct: 9 DQLLSAQQPLSEPAHHDEXLFIIQHQTSELWLKLLAHELRAAIVHLQRDEVWQCRKVLAR 68
Query: 138 ALTVINIRNEE 148
+ V+ E+
Sbjct: 69 SKQVLRQLTEQ 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,574,880
Number of Sequences: 62578
Number of extensions: 281097
Number of successful extensions: 718
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 716
Number of HSP's gapped (non-prelim): 8
length of query: 365
length of database: 14,973,337
effective HSP length: 100
effective length of query: 265
effective length of database: 8,715,537
effective search space: 2309617305
effective search space used: 2309617305
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)