BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17788
(365 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q14690|RRP5_HUMAN Protein RRP5 homolog OS=Homo sapiens GN=PDCD11 PE=1 SV=3
Length = 1871
Score = 246 bits (627), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 126/330 (38%), Positives = 202/330 (61%), Gaps = 4/330 (1%)
Query: 30 GFTWGMAMEDLNLLKPNQDDSEDEEEEVEIKKVKPKLTKAEKLAAAKAEEARIRQAEDEL 89
GF W + ++ L P +S D EE+ + + K +K E+ + E + + E+ L
Sbjct: 1536 GFAWNVGLDSLTPALPPLAESSDSEEDEKPHQATIKKSKKERELEKQKAEKELSRIEEAL 1595
Query: 90 LQNG-EPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEE 148
+ G +P S D FDR++L PN+S LW++YMA+HLQATEIEKAR++A RAL I+ R E+
Sbjct: 1596 MDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQ 1655
Query: 149 DRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVK 208
++LNVW +LLNLE++YG++ESL + AV+ N+ KV++++ +IYA S + ++
Sbjct: 1656 EKLNVWVALLNLENMYGSQESLTKVFERAVQYNEPLKVFLHLADIYAKSEKFQEAGELYN 1715
Query: 209 LLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAEN 268
+LK+ Q + ++++ LLR Q + +LQR L LP HV +I +FA E
Sbjct: 1716 RMLKRFRQEKA---VWIKYGAFLLRRSQAAASHRVLQRALECLPSKEHVDVIAKFAQLEF 1772
Query: 269 KFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLK 328
+ GDA RA+A+ E+TL++YP R DVW VY+DM +K R + +R + L PK++K
Sbjct: 1773 QLGDAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKDVRDIFERVIHLSLAPKRMK 1832
Query: 329 PLYMKWLKLEEQYGDAEAVENVKKEIEQYV 358
+ ++L E+Q+G + V+ VK + +YV
Sbjct: 1833 FFFKRYLDYEKQHGTEKDVQAVKAKALEYV 1862
>sp|Q6NS46|RRP5_MOUSE Protein RRP5 homolog OS=Mus musculus GN=Pdcd11 PE=2 SV=2
Length = 1862
Score = 237 bits (604), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 128/343 (37%), Positives = 207/343 (60%), Gaps = 5/343 (1%)
Query: 17 TQSNSIPDSLPQVGFTWGMAMEDLNLLKPNQDDSEDEEEEVEIKKVKPKLTKAEKLAAAK 76
T+S +P GF W + ++ L P +++S D E+E + K K K +L K
Sbjct: 1515 TKSTEVPRLHLSSGFLWDVGLDSLTPALPLREESSDSEDEQPHQAKKKKGKKERELEKQK 1574
Query: 77 AEEARIRQAEDELLQNG-EPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIA 135
AE+ + + E+ L+ G +P S D FDR++L PN+S LW++YMA+HLQATEIEKAR++A
Sbjct: 1575 AEK-ELSRIEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVA 1633
Query: 136 RRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYA 195
RAL I+ R E+++LNVW +LLNLE++YG++ESL + AV+ N+ KV++++ +IY
Sbjct: 1634 ERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFERAVQYNEPLKVFLHLADIYT 1693
Query: 196 ASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV 255
S + ++ +LK+ Q + ++++ +L Q + +LQR L LP
Sbjct: 1694 KSEKYKEAGELYNRMLKRFRQEKA---VWIKYGAFVLGRSQAGASHRVLQRALECLPAKE 1750
Query: 256 HVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQ 315
HV +I +FA E + GD RA+A+ E+TL++YP R DVW VY+DM +K R + +
Sbjct: 1751 HVDVIVKFAQLEFQLGDVERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQTAVRDIFE 1810
Query: 316 RAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYV 358
R + L PK++K + ++L E+Q+G + V+ VK + +YV
Sbjct: 1811 RVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYV 1853
>sp|A7MB10|RRP5_BOVIN Protein RRP5 homolog OS=Bos taurus GN=PDCD11 PE=2 SV=1
Length = 1874
Score = 226 bits (575), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 124/331 (37%), Positives = 205/331 (61%), Gaps = 5/331 (1%)
Query: 30 GFTWGMAMEDLN-LLKPNQDDSEDEEEEVEIKKVKPKLTKAEKLAAAKAEEARIRQAEDE 88
GF W + ++ L L P+ D S+ EE+E + + K +K E+ + E + + E+
Sbjct: 1538 GFVWDVGLDTLTPALPPHGDSSDSEEDEKPEQATQKKKSKKERELEKQKAEKELSRIEEA 1597
Query: 89 LLQNG-EPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNE 147
L+ G +P S + FDR++L P++S LW++YMA+HLQATEIEKAR++A RAL I+ R E
Sbjct: 1598 LMDPGRQPESAEDFDRLVLSSPSSSLLWLQYMAFHLQATEIEKARAVAERALKTISFREE 1657
Query: 148 EDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTV 207
+++LNVW +LLNLE++YG++ESL + AV+ N+ KV++++ +IY S + ++
Sbjct: 1658 QEKLNVWVALLNLENMYGSQESLTKVFERAVQYNEPLKVFLHLADIYTKSEKFQEAGELY 1717
Query: 208 KLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAE 267
+LK+ Q + ++++ LLR G+ + + ++QR L LP HV +I +FA E
Sbjct: 1718 NRMLKRFRQEKA---VWVKYGAFLLRRGKAEASHRVMQRALECLPKKEHVDVIAKFAQLE 1774
Query: 268 NKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKL 327
+ GDA RA+A+ E TL+ YP R DVW VY+DM++K R + +R + L PK++
Sbjct: 1775 FQLGDAERARAIFESTLSIYPKRTDVWSVYIDMIIKHGSQKEARAIFERVIHLSLAPKRM 1834
Query: 328 KPLYMKWLKLEEQYGDAEAVENVKKEIEQYV 358
K + ++L E+Q+G + V+ VK + +YV
Sbjct: 1835 KFFFKRYLDYEKQHGSEKDVQAVKAKALEYV 1865
>sp|Q05022|RRP5_YEAST rRNA biogenesis protein RRP5 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RRP5 PE=1 SV=1
Length = 1729
Score = 180 bits (457), Expect = 1e-44, Method: Composition-based stats.
Identities = 96/270 (35%), Positives = 153/270 (56%), Gaps = 2/270 (0%)
Query: 95 PVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVW 154
P S F+R+L+G PN+S +W+ YMA+ LQ +EIEKAR +A RAL IN R E ++LN+W
Sbjct: 1458 PESVADFERLLIGNPNSSVVWMNYMAFQLQLSEIEKARELAERALKTINFREEAEKLNIW 1517
Query: 155 TSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKA 214
++LNLE+ +GT+E+L+E A + D ++ ++ IY S + K KK
Sbjct: 1518 IAMLNLENTFGTEETLEEVFSRACQYMDSYTIHTKLLGIYEISEKFDKAAELFKATAKKF 1577
Query: 215 GQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDAS 274
G V+I++ L+ ++ AR IL L LP H+ ++ +FA E GD
Sbjct: 1578 GG--EKVSIWVSWGDFLISHNEEQEARTILGNALKALPKRNHIEVVRKFAQLEFAKGDPE 1635
Query: 275 RAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKW 334
R ++L E + P R+D+W VYVD VK+ + +R +T+K+ K+ K + KW
Sbjct: 1636 RGRSLFEGLVADAPKRIDLWNVYVDQEVKAKDKKKVEDLFERIITKKITRKQAKFFFNKW 1695
Query: 335 LKLEEQYGDAEAVENVKKEIEQYVRNSKNK 364
L+ EE GD + +E VK + +YV + +++
Sbjct: 1696 LQFEESEGDEKTIEYVKAKATEYVASHESQ 1725
>sp|O74835|RRP5_SCHPO rRNA biogenesis protein rrp5 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rrp5 PE=1 SV=1
Length = 1690
Score = 177 bits (450), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 106/267 (39%), Positives = 157/267 (58%), Gaps = 3/267 (1%)
Query: 95 PVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVW 154
P + F+R LL PN+S LW+ YMAYHL E+++AR + +RAL+ IN R E+++LNVW
Sbjct: 1423 PSTAADFERQLLSSPNSSLLWISYMAYHLNLNELQEAREVGKRALSTINYREEDEKLNVW 1482
Query: 155 TSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKA 214
+LLNLE YGT++SL+E EA D VY + I ++ + ++L+LK
Sbjct: 1483 MALLNLEVAYGTEDSLKEVFKEACAYCDALIVYEKLCGILIKGGKVDLADEYMQLMLKNF 1542
Query: 215 GQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDAS 274
Q S +++Q AT LL + + A +L+R L +LP + HV +I +FA+ E K GD
Sbjct: 1543 KQVPS---VWIQYATFLLNNDKAEKAHGLLERSLQSLPKSEHVGIIEKFAILEFKNGDPE 1599
Query: 275 RAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKW 334
R + + E L+SYP R+D+W V +DM +K D + R++ QR + L KK K + KW
Sbjct: 1600 RGRTIFEGLLSSYPKRLDLWNVLIDMEMKQDDPSIVRRLFQRLLALNLSTKKAKFAFKKW 1659
Query: 335 LKLEEQYGDAEAVENVKKEIEQYVRNS 361
L E+ GD E E VK+ +YV S
Sbjct: 1660 LAYEKNIGDDEGAEQVKRRAIEYVSES 1686
>sp|Q7SGD2|CLF1_NEUCR Pre-mRNA-splicing factor clf-1 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=clf-1 PE=3 SV=1
Length = 695
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/277 (22%), Positives = 118/277 (42%), Gaps = 41/277 (14%)
Query: 101 FDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALT-------------------- 140
F+R L PNN++LW++Y+ ++ I AR++ RA+T
Sbjct: 95 FERALDVHPNNTQLWIRYVQAEIKNRNINHARNLLDRAVTRLPRVTSLWYQYLYVMEMLG 154
Query: 141 -VINIRNEEDRL-------NVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMME 192
+ R DR W++ + LE YG + +E + E + ++ +
Sbjct: 155 DIPGTRQVFDRWMKWQPDEQAWSAYIRLEKRYGEFDRAREIFRAFTAVHPEPRTWLKWAK 214
Query: 193 I---YAASAQIRD-LESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGL 248
Y S +R+ ++ ++ + + G I++ A RL + + AR I + GL
Sbjct: 215 FEEEYGTSDTVREVFQTAIQTIAETLGDDAVDERIFIAFARYEARLREYERARAIYKFGL 274
Query: 249 NNLPPAVHVTLITRFALAENKFGDA--------SRAQALLEHTLTSYPARVDVWGVYVDM 300
+NLP + +TL + E +FGD ++ + L E + DVW + +
Sbjct: 275 DNLPRSKSMTLHAHYTTFEKQFGDKEGVEDVILTKRRRLYEEQVKENAKNYDVWFDFARL 334
Query: 301 LVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKL 337
VD R+V +RA+ Q +PP + K + +++ L
Sbjct: 335 EESGGDVDRTREVYERAIAQ-VPPTQEKRHWRRYIFL 370
Score = 37.7 bits (86), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 43/201 (21%), Positives = 74/201 (36%), Gaps = 19/201 (9%)
Query: 136 RRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDET------KVYMN 189
RR L ++ +VW LE G + +E A+ T + Y+
Sbjct: 310 RRRLYEEQVKENAKNYDVWFDFARLEESGGDVDRTREVYERAIAQVPPTQEKRHWRRYIF 369
Query: 190 MMEIYAAS--------AQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTAR 241
+ YA + R + T L+ T + V ++ A +R GQ TAR
Sbjct: 370 LFLFYAIWEERETKDIGRARQIYDTCLNLIPHKKFTFAKV--WVAKAHFEIRQGQLTTAR 427
Query: 242 HILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDML 301
L R + P + + L E K + R + L E + PA W + ++
Sbjct: 428 KTLGRAIGMCPKD---KIFKEYILLEQKLYEFERCRTLYEKHVMYNPANCQTWIKWAELE 484
Query: 302 VKSDRVDLGRQVIQRAVTQKL 322
D ++ R + + AV+Q +
Sbjct: 485 RGLDDLERTRAIFELAVSQPI 505
>sp|Q527H0|CLF1_MAGO7 Pre-mRNA-splicing factor CLF1 OS=Magnaporthe oryzae (strain 70-15 /
ATCC MYA-4617 / FGSC 8958) GN=CLF1 PE=3 SV=1
Length = 691
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 120/295 (40%), Gaps = 40/295 (13%)
Query: 82 IRQAEDELLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALT- 140
++ A+ EL Q S F+R L N LW++Y+ L++ I AR++ RA+T
Sbjct: 76 LQYAQWELEQKEYARSRSVFERALNLHANKVTLWIRYVEAELKSRNINFARNLLDRAVTH 135
Query: 141 --------------------VINIRNEEDRL-------NVWTSLLNLEHLYGTKESLQEC 173
+ +R +R W++ + LE YG + +E
Sbjct: 136 LPRVDKLWYKYVWVEEMLGNIPGVRQVFERWMEWQPDEAAWSAFIKLEQRYGEYDRAREI 195
Query: 174 LHEAVRCNDETKVYM---NMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATL 230
+ E + ++ E Y S ++R++ L K G +++ A
Sbjct: 196 FTRFTMVHPEPRNWIKWSKFEEEYGTSDRVREVFERAIEELSKYGDEFVEERLFIAYARY 255
Query: 231 LLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDA--------SRAQALLEH 282
+L D AR I + GL NLP + + L + E ++GD S+ + E
Sbjct: 256 EAKLHDLDRARAIYKFGLENLPRSKAMLLHKEYTTFEKQYGDREGVEDVVLSKRRRHYED 315
Query: 283 TLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKL 337
+ P DVW Y + S +D R+V ++A+ Q +PP + K + +++ L
Sbjct: 316 LVRENPKNYDVWFDYARLEEASGDIDRTREVYEKAIAQ-VPPTQAKRHWRRYIYL 369
Score = 40.0 bits (92), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 274 SRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMK 333
+R++++ E L + +V +W YV+ +KS ++ R ++ RAVT LP ++ L+ K
Sbjct: 89 ARSRSVFERALNLHANKVTLWIRYVEAELKSRNINFARNLLDRAVTH-LP--RVDKLWYK 145
Query: 334 WLKLEEQYGDAEAVENV 350
++ +EE G+ V V
Sbjct: 146 YVWVEEMLGNIPGVRQV 162
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 40/105 (38%), Gaps = 3/105 (2%)
Query: 216 QTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASR 275
+T + +++ A +R G AR L R + P L + E K + R
Sbjct: 401 RTFTFAKVWMHKAHFEIRQGDLAAARKTLGRAIGMCPKD---RLFKGYIEMEQKLYEFGR 457
Query: 276 AQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ 320
+ L E + PA W + ++ D +D R ++ + Q
Sbjct: 458 CRILYEKHIAYNPANCSTWVKWAELERGLDDLDRARAILDMGIAQ 502
>sp|Q5K654|CLF1_PARBR Pre-mRNA-splicing factor CLF1 OS=Paracoccidioides brasiliensis
GN=CLF1 PE=3 SV=1
Length = 677
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 120/295 (40%), Gaps = 43/295 (14%)
Query: 82 IRQAEDELLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTV 141
+R A+ EL Q + F+R L P LW++Y+ ++ I AR++ RA+T+
Sbjct: 76 MRYAQWELEQKEFRRARSVFERALDVDPTAVVLWIRYIEAEMKTRNINHARNLLDRAVTI 135
Query: 142 IN---------IRNEEDRLNV-------------------WTSLLNLEHLYGTKESLQEC 173
+ + EE N+ W + + LE Y + ++
Sbjct: 136 YSRVDKLWYKYVYMEEMLGNIPGTRQVFERWMSWEPDEGAWGAYIKLEKRYNEFDRVRAI 195
Query: 174 LHEAVRCNDETKVYMN---MMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATL 230
+ E K ++ E Y S +R++ L ++ G+ +++ A
Sbjct: 196 FERFTVVHPEPKNWIKWARFEEEYGTSDMVREVYG---LAIETLGEDFMDEKLFIAYARY 252
Query: 231 LLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDA--------SRAQALLEH 282
+L + + AR I + L+ LP A V L + E +FGD S+ + E
Sbjct: 253 EAKLKEFERARAIYKYALDRLPRAKSVALHKAYTTFEKQFGDREGVEDVILSKRRVQYEE 312
Query: 283 TLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKL 337
+ P D+W +V + S V+ R V +RA+ Q +PP + K + +++ L
Sbjct: 313 QIKENPKNYDIWFDFVRLEESSGDVERVRDVYERAIAQ-MPPSQEKRHWRRYIYL 366
>sp|Q4WT84|CLF1_ASPFU Pre-mRNA-splicing factor clf1 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=clf1 PE=3
SV=1
Length = 676
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 65/306 (21%), Positives = 122/306 (39%), Gaps = 43/306 (14%)
Query: 82 IRQAEDELLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTV 141
+R A EL Q + F+R L P + LW++Y+ ++ I AR++ RA+T+
Sbjct: 76 MRYASWELEQKEFRRARSIFERALDVNPTSVVLWIRYIESEMRNRNINHARNLLDRAVTI 135
Query: 142 I---------NIRNEEDRLNV-------------------WTSLLNLEHLYGTKESLQEC 173
+ + EE N+ W++ + LE Y E +
Sbjct: 136 LPRVDKFWYKYVYMEETLGNIQGTRQVFERWMSWEPDEGAWSAYIKLEKRYNEFERARAI 195
Query: 174 LHEAVRCNDETKVYM---NMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATL 230
+ E + ++ E Y S +R++ + ++ G+ +++ A
Sbjct: 196 FQRFTIVHPEPRNWIKWARFEEEYGTSDLVREVYG---MAIETLGEDFMDEKLFIAYAKF 252
Query: 231 LLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDA--------SRAQALLEH 282
+L + + AR I + L+ LP + + L + E +FGD S+ + E
Sbjct: 253 EAKLKEYERARAIYKYALDRLPRSKAMALHKAYTTFEKQFGDREGVEDVILSKRRVQYEE 312
Query: 283 TLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYG 342
L P DVW + + S D R + +RA+ Q +PP + K + +++ L Y
Sbjct: 313 QLKENPRNYDVWFDFARLEETSGDPDRVRDIYERAIAQ-IPPSQEKRHWRRYIYLWIFYA 371
Query: 343 DAEAVE 348
E +E
Sbjct: 372 IWEEME 377
Score = 39.7 bits (91), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/132 (20%), Positives = 57/132 (43%), Gaps = 7/132 (5%)
Query: 219 SSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQA 278
+SV ++++ +R + AR++L R + LP ++ E G+ +
Sbjct: 104 TSVVLWIRYIESEMRNRNINHARNLLDRAVTILPRVD--KFWYKYVYMEETLGNIQGTRQ 161
Query: 279 LLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLE 338
+ E ++ P W Y+ + + + + R + QR P+ ++KW + E
Sbjct: 162 VFERWMSWEPDE-GAWSAYIKLEKRYNEFERARAIFQRFTIVHPEPRN----WIKWARFE 216
Query: 339 EQYGDAEAVENV 350
E+YG ++ V V
Sbjct: 217 EEYGTSDLVREV 228
Score = 33.5 bits (75), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/93 (20%), Positives = 44/93 (47%), Gaps = 11/93 (11%)
Query: 101 FDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLN----VWTS 156
+++ + P NS+ W+KY E+E+ + RA + + ++ L+ VW +
Sbjct: 459 YEKQIEWNPANSQSWIKY-------AELERGLDDSERARAIFELGIDQPMLDMPELVWKA 511
Query: 157 LLNLEHLYGTKESLQECLHEAVRCNDETKVYMN 189
++ E G + +++ ++ D KV++N
Sbjct: 512 YIDFEEYEGEYDRVRQLYERLLQKTDHVKVWIN 544
>sp|P0CO10|CLF1_CRYNJ Pre-mRNA-splicing factor CLF1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=CLF1 PE=3 SV=1
Length = 726
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 81/363 (22%), Positives = 138/363 (38%), Gaps = 67/363 (18%)
Query: 53 EEEEVEIKKVKPKLTKAEKLAAAKAE-----EARIRQAEDELL-----------QNGEPV 96
E +E I+ K ++ E+L+ +A E+RIR + D +L QN
Sbjct: 34 ERQEPAIQAPKQRVQDLEELSEFQARKRTEFESRIRYSRDSILAWTKYAQWEASQNEYER 93
Query: 97 SPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVI---------NIRNE 147
S F+R L P + +LW+KY L+A I AR++ RA+T++ + E
Sbjct: 94 SRSVFERALDVDPRSVDLWIKYTDMELKARNINHARNLFDRAITLLPRVDALWYKYVYLE 153
Query: 148 EDRLNV-------------------WTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYM 188
E LNV W S + LE Y + + C K ++
Sbjct: 154 ELLLNVSGARQIFERWMQWEPNDKAWQSYIKLEERYNELDRASAIYERWIACRPIPKNWV 213
Query: 189 NMMEIYAASAQIRDLESTVKLLLKKAG----QTHSSVNIYLQCATLLLRLGQKDTARHIL 244
+ Q + L+ G Q + +++ A + RL + + AR I
Sbjct: 214 TWAKFEEDRGQPDKAREVFQTALEFFGDEEEQVEKAQSVFAAFARMETRLKEFERARVIY 273
Query: 245 QRGLNNLPPAVHVTLITRFALAENKFGDASRAQALL--------EHTLTSYPARVDVWGV 296
+ L LP + +L ++ E + GD + + + E L P D W
Sbjct: 274 KFALARLPRSKSASLYAQYTKFEKQHGDRAGVELTVLGKRRIQYEEELAYDPTNYDAWFS 333
Query: 297 YVDM---LVKSDRVD-------LGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEA 346
+ ++DR D R+V +RAV +PP K + +++ L QY E
Sbjct: 334 LARLEEDAYRADREDGEDVEPMRVREVYERAVAN-VPPALEKRYWRRYIYLWLQYAAFEE 392
Query: 347 VEN 349
++
Sbjct: 393 IDT 395
>sp|P0CO11|CLF1_CRYNB Pre-mRNA-splicing factor CLF1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=CLF1 PE=3 SV=1
Length = 726
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 81/363 (22%), Positives = 138/363 (38%), Gaps = 67/363 (18%)
Query: 53 EEEEVEIKKVKPKLTKAEKLAAAKAE-----EARIRQAEDELL-----------QNGEPV 96
E +E I+ K ++ E+L+ +A E+RIR + D +L QN
Sbjct: 34 ERQEPAIQAPKQRVQDLEELSEFQARKRTEFESRIRYSRDSILAWTKYAQWEASQNEYER 93
Query: 97 SPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVI---------NIRNE 147
S F+R L P + +LW+KY L+A I AR++ RA+T++ + E
Sbjct: 94 SRSVFERALDVDPRSVDLWIKYTDMELKARNINHARNLFDRAITLLPRVDALWYKYVYLE 153
Query: 148 EDRLNV-------------------WTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYM 188
E LNV W S + LE Y + + C K ++
Sbjct: 154 ELLLNVSGARQIFERWMQWEPNDKAWQSYIKLEERYNELDRASAIYERWIACRPIPKNWV 213
Query: 189 NMMEIYAASAQIRDLESTVKLLLKKAG----QTHSSVNIYLQCATLLLRLGQKDTARHIL 244
+ Q + L+ G Q + +++ A + RL + + AR I
Sbjct: 214 TWAKFEEDRGQPDKAREVFQTALEFFGDEEEQVEKAQSVFAAFARMETRLKEFERARVIY 273
Query: 245 QRGLNNLPPAVHVTLITRFALAENKFGDASRAQALL--------EHTLTSYPARVDVWGV 296
+ L LP + +L ++ E + GD + + + E L P D W
Sbjct: 274 KFALARLPRSKSASLYAQYTKFEKQHGDRAGVELTVLGKRRIQYEEELAYDPTNYDAWFS 333
Query: 297 YVDM---LVKSDRVD-------LGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEA 346
+ ++DR D R+V +RAV +PP K + +++ L QY E
Sbjct: 334 LARLEEDAYRADREDGEDVEPMRVREVYERAVAN-VPPALEKRYWRRYIYLWLQYAAFEE 392
Query: 347 VEN 349
++
Sbjct: 393 IDT 395
>sp|Q9HF03|CLF1_CRYNH Pre-mRNA-splicing factor CLF1 OS=Cryptococcus neoformans var.
grubii serotype A (strain H99 / ATCC 208821 / CBS 10515
/ FGSC 9487) GN=CLF1 PE=3 SV=1
Length = 724
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 81/363 (22%), Positives = 138/363 (38%), Gaps = 67/363 (18%)
Query: 53 EEEEVEIKKVKPKLTKAEKLAAAKAE-----EARIRQAEDELL-----------QNGEPV 96
E +E I+ K ++ E+L+ +A E+RIR + D +L QN
Sbjct: 34 ERQEPTIQAPKQRVQDLEELSEFQARKRTEFESRIRYSRDSILAWTKYAQWEASQNEYER 93
Query: 97 SPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVI---------NIRNE 147
S F+R L P + +LW+KY L+A I AR++ RA+T++ + E
Sbjct: 94 SRSVFERALDVDPRSVDLWIKYTDMELKARNINHARNLFDRAITLLPRVDALWYKYVYLE 153
Query: 148 EDRLNV-------------------WTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYM 188
E LNV W S + LE Y + + C K ++
Sbjct: 154 ELLLNVSGARQIFERWMQWEPNDKAWQSYIKLEERYNELDRASAIYERWIACRPIPKNWV 213
Query: 189 NMMEIYAASAQIRDLESTVKLLLKKAG----QTHSSVNIYLQCATLLLRLGQKDTARHIL 244
+ Q + L+ G Q + +++ A + RL + + AR I
Sbjct: 214 AWAKFEEDRGQPDKAREVFQTALEFFGDEEEQVEKAQSVFAAFARMETRLKEFERARVIY 273
Query: 245 QRGLNNLPPAVHVTLITRFALAENKFGDASRAQALL--------EHTLTSYPARVDVWGV 296
+ L LP + +L ++ E + GD + + + E L P D W
Sbjct: 274 KFALARLPRSKSASLYAQYTKFEKQHGDRAGVELTVLGKRRIQYEEELAYDPTNYDAWFS 333
Query: 297 YVDM---LVKSDRVD-------LGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEA 346
+ ++DR D R+V +RAV +PP K + +++ L QY E
Sbjct: 334 LARLEEDAYRADREDGEDVEPMRVREVYERAVAN-VPPALEKRYWRRYIYLWLQYAAFEE 392
Query: 347 VEN 349
++
Sbjct: 393 IDT 395
>sp|Q5BDX1|CLF1_EMENI Pre-mRNA-splicing factor clf1 OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=clf1
PE=3 SV=2
Length = 673
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/267 (20%), Positives = 106/267 (39%), Gaps = 21/267 (7%)
Query: 82 IRQAEDELLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTV 141
IR E E+ + + DR + P +LW KY+ I R + R ++
Sbjct: 110 IRYIESEMRNRNINHARNLLDRAVTILPRVDKLWYKYVYMEETLGNIPGTRQVFERWMSW 169
Query: 142 INIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMN---MMEIYAASA 198
E W++ + LE Y E + + E + ++ E Y S
Sbjct: 170 ------EPDEGAWSAYIKLEKRYNEFERARAIFQRFTIVHPEPRNWIKWARFEEEYGTSD 223
Query: 199 QIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVT 258
+R++ L ++ G+ +++ A +L + + AR I + L+ LP + +T
Sbjct: 224 LVREV---YGLAVETLGEDFMDEKLFIAYARFETKLKEYERARAIYKYALDRLPRSKSIT 280
Query: 259 LITRFALAENKFGDA--------SRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLG 310
L + E +FGD ++ + E L DVW + + +S +
Sbjct: 281 LHKAYTTFEKQFGDREGVENVILAKRRVQYEEQLKENLRNYDVWFDFARLEEQSGDPERV 340
Query: 311 RQVIQRAVTQKLPPKKLKPLYMKWLKL 337
R V +RA+ Q +PP + K + +++ L
Sbjct: 341 RDVYERAIAQ-IPPSQEKRHWRRYIYL 366
Score = 35.0 bits (79), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 89/243 (36%), Gaps = 23/243 (9%)
Query: 115 WVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECL 174
W++Y A+ L+ E +ARSI RAL V + + +W + E + L
Sbjct: 75 WMRYAAWELEQKEFRRARSIFERALDV-----DSTSVPLWIRYIESEMRNRNINHARNLL 129
Query: 175 HEAV----RCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATL 230
AV R + Y+ M E R + ++ + L
Sbjct: 130 DRAVTILPRVDKLWYKYVYMEETLGNIPGTRQ-------VFERWMSWEPDEGAWSAYIKL 182
Query: 231 LLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQ---ALLEHTLTSY 287
R + + AR I QR P + RF E ++G + + L TL
Sbjct: 183 EKRYNEFERARAIFQRFTIVHPEPRNWIKWARF---EEEYGTSDLVREVYGLAVETLGED 239
Query: 288 PARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAV 347
++ Y K + R + + A+ +LP K L+ + E+Q+GD E V
Sbjct: 240 FMDEKLFIAYARFETKLKEYERARAIYKYALD-RLPRSKSITLHKAYTTFEKQFGDREGV 298
Query: 348 ENV 350
ENV
Sbjct: 299 ENV 301
>sp|Q6C186|CLF1_YARLI Pre-mRNA-splicing factor CLF1 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=CLF1 PE=3 SV=1
Length = 676
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 101/272 (37%), Gaps = 67/272 (24%)
Query: 111 NSELWVKYMAYHLQATEIEKARSIARRALTV------------------INIRNEEDRLN 152
N+ W++Y + L+ E +ARS+ RAL V NI + + L+
Sbjct: 65 NTGQWMRYAQWELEQREFARARSVFERALEVNSTHVPTWIRYIQCELKEKNINHARNLLD 124
Query: 153 VWTSLL-NLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLE------S 205
+LL ++ L+ T + +E L C + +M+ A A ++E
Sbjct: 125 RAVTLLPRVDKLWFTYVATEETLGNIAGCRAVFERWMHWRPPVTAWAAYVNMEKRYREFD 184
Query: 206 TVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHV-------T 258
+ +L++ H + + A + G +DT R + G++ L H +
Sbjct: 185 RARGILRRYVTVHPGAPAWNKWAKFEMEAGNRDTVREVYALGIDTLVEMAHGGVDFLDES 244
Query: 259 LITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAV 318
L+ +A E + + RA+AL + L
Sbjct: 245 LLAGWASFETRHREYERARALYTYGL---------------------------------- 270
Query: 319 TQKLPPKKLKPLYMKWLKLEEQYGDAEAVENV 350
+KLP K LY + E+QYG E +ENV
Sbjct: 271 -EKLPKSKSAKLYADYTAFEKQYGAKEGIENV 301
Score = 38.5 bits (88), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 47/223 (21%), Positives = 89/223 (39%), Gaps = 13/223 (5%)
Query: 82 IRQAEDELLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYH-LQATEIEKARSIARRALT 140
IR+ + + N P S + R + LW+KY + L+ E+EKAR I + ++
Sbjct: 341 IREIFERAVSNVPPHSKRLWRRYIF-------LWIKYAIWEELENKEVEKAREIYKTCIS 393
Query: 141 VINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAV-RCNDETKVYMNMMEIYAASAQ 199
+I + VW E +G ++ L + + +Y + A A+
Sbjct: 394 IIP-HKKFTFAKVWLLWAKFEIRHGNLPEARKILGRGLGMSGGKPALYKGYI---ALEAK 449
Query: 200 IRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTL 259
+R+ + KL K + +++ A L LG ++ AR I + ++ + +
Sbjct: 450 LREFDRCRKLYDKYVEKFAEFAAPWMEYAELEQMLGDEERARAIFELAVSQPEMEMPELV 509
Query: 260 ITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLV 302
RF E + + RA+A+ L + VW + V
Sbjct: 510 WKRFIEFEAEEENYDRARAIYRQLLDRTHGHIKVWISFAQFEV 552
>sp|P63155|CRNL1_RAT Crooked neck-like protein 1 OS=Rattus norvegicus GN=Crnkl1 PE=2
SV=1
Length = 690
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 98/260 (37%), Gaps = 23/260 (8%)
Query: 101 FDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNL 160
+DR + P ++ W KY + AR + R + + EE W S +N
Sbjct: 138 WDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWM---EWQPEE---QAWHSYINF 191
Query: 161 EHLYGTKESLQECLHEAVRCNDETK---VYMNMMEIYAASAQIRDL-ESTVKLLLKKAGQ 216
E Y E + V + K Y E +A A R + E V+ G
Sbjct: 192 ELRYKEVERARTIYERFVLVHPAVKNWIKYARFEEKHAYFAHARKVYERAVEFF----GD 247
Query: 217 THSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGD---- 272
H ++Y+ A + + R I + L+ + L + + E KFGD
Sbjct: 248 EHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFGDRRGI 307
Query: 273 ----ASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLK 328
S+ + E + + P D W Y+ ++ D R+V +RA+ +PP + K
Sbjct: 308 EDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEADTVREVYERAIAN-VPPIQEK 366
Query: 329 PLYMKWLKLEEQYGDAEAVE 348
+ +++ L Y E +E
Sbjct: 367 RHWKRYIYLWVNYALYEELE 386
Score = 36.2 bits (82), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 52/249 (20%), Positives = 96/249 (38%), Gaps = 35/249 (14%)
Query: 115 WVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLE----HLYGTKESL 170
W+KY + EI++ARSI RAL V + RN + +W +E + +
Sbjct: 84 WIKYAQWEESLKEIQRARSIYERALDV-DYRN----ITLWLKYAEMEMKNRQVNHARNIW 138
Query: 171 QECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATL 230
+ R N Y M E+ A R + + HS +N
Sbjct: 139 DRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQAWHSYIN-------F 191
Query: 231 LLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPAR 290
LR + + AR I +R + + PAV + K+ A H Y
Sbjct: 192 ELRYKEVERARTIYERFV-LVHPAVKNWI---------KYARFEEKHAYFAHARKVYERA 241
Query: 291 VDVWG-------VYVDML-VKSDRVDLGR-QVIQRAVTQKLPPKKLKPLYMKWLKLEEQY 341
V+ +G +YV + ++ + R +VI + ++ ++ + L+ + E+++
Sbjct: 242 VEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKF 301
Query: 342 GDAEAVENV 350
GD +E++
Sbjct: 302 GDRRGIEDI 310
>sp|P63154|CRNL1_MOUSE Crooked neck-like protein 1 OS=Mus musculus GN=Crnkl1 PE=2 SV=1
Length = 690
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 98/260 (37%), Gaps = 23/260 (8%)
Query: 101 FDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNL 160
+DR + P ++ W KY + AR + R + + EE W S +N
Sbjct: 138 WDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWM---EWQPEE---QAWHSYINF 191
Query: 161 EHLYGTKESLQECLHEAVRCNDETK---VYMNMMEIYAASAQIRDL-ESTVKLLLKKAGQ 216
E Y E + V + K Y E +A A R + E V+ G
Sbjct: 192 ELRYKEVERARTIYERFVLVHPAVKNWIKYARFEEKHAYFAHARKVYERAVEFF----GD 247
Query: 217 THSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGD---- 272
H ++Y+ A + + R I + L+ + L + + E KFGD
Sbjct: 248 EHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFGDRRGI 307
Query: 273 ----ASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLK 328
S+ + E + + P D W Y+ ++ D R+V +RA+ +PP + K
Sbjct: 308 EDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEADTVREVYERAIAN-VPPIQEK 366
Query: 329 PLYMKWLKLEEQYGDAEAVE 348
+ +++ L Y E +E
Sbjct: 367 RHWKRYIYLWVNYALYEELE 386
Score = 36.2 bits (82), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 52/249 (20%), Positives = 96/249 (38%), Gaps = 35/249 (14%)
Query: 115 WVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLE----HLYGTKESL 170
W+KY + EI++ARSI RAL V + RN + +W +E + +
Sbjct: 84 WIKYAQWEESLKEIQRARSIYERALDV-DYRN----ITLWLKYAEMEMKNRQVNHARNIW 138
Query: 171 QECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATL 230
+ R N Y M E+ A R + + HS +N
Sbjct: 139 DRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQAWHSYIN-------F 191
Query: 231 LLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPAR 290
LR + + AR I +R + + PAV + K+ A H Y
Sbjct: 192 ELRYKEVERARTIYERFV-LVHPAVKNWI---------KYARFEEKHAYFAHARKVYERA 241
Query: 291 VDVWG-------VYVDML-VKSDRVDLGR-QVIQRAVTQKLPPKKLKPLYMKWLKLEEQY 341
V+ +G +YV + ++ + R +VI + ++ ++ + L+ + E+++
Sbjct: 242 VEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKF 301
Query: 342 GDAEAVENV 350
GD +E++
Sbjct: 302 GDRRGIEDI 310
>sp|Q54Z08|SYF1_DICDI Pre-mRNA-splicing factor SYF1 OS=Dictyostelium discoideum GN=xab2
PE=3 SV=1
Length = 850
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 64/314 (20%), Positives = 142/314 (45%), Gaps = 30/314 (9%)
Query: 59 IKKVKPKLTKAEKLAAAKAEEARIRQAEDEL------LQNGEPVSPDGFDRMLLGQPNNS 112
IK + P+L K KL+ + A + ++L +N V+ D + + +
Sbjct: 395 IKSIDPQLAKG-KLSTIYSTFAHFYEQNNKLSQARLIFENSLTVNFKTIDDLSTLYCDYA 453
Query: 113 ELWVKYMAYHLQATEIEKARSIARRALTVINIRNE--EDRL----NVWTSLLNLEHLYGT 166
E+ +K+ Y +A EI K +++ + I NE + RL +WT ++LE +GT
Sbjct: 454 EMELKHRNYE-KAIEILKRGTVSPKKQNTIIEENEPVQKRLFKSIKIWTFYVDLEESFGT 512
Query: 167 KESLQECLHEAVRCNDET-KVYMNMMEIYAASAQIRDL----ESTVKLLLKKAGQTHSSV 221
+ + + ++ T ++ +N + + D+ E V+L L Q
Sbjct: 513 FHNTKSIYEKMIQLKVVTPQIILNFAKYLEENKYFEDMFKAYEHGVQLFLFPHVQ----- 567
Query: 222 NIYLQCATLLLR--LGQK-DTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQA 278
+I++ T ++ G K + R + ++ L+ +PP + +A E ++G A + A
Sbjct: 568 DIWITYLTKFIQRYAGMKLERTRDLFEQVLSKVPPKESIIFYLMYANFEEQYGLARHSMA 627
Query: 279 LLEHTLTSYPA--RVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLK 336
+ + S R ++ +Y+ + V+ R++ +A+ Q LP + ++ + +K+
Sbjct: 628 VYDRAAKSVDKEDRFKMYLLYIHRASEFFGVNQTREIFSKAIEQ-LPDQYVRDMCLKFAD 686
Query: 337 LEEQYGDAEAVENV 350
+E++YG+ + ++
Sbjct: 687 MEKKYGEIDRARSI 700
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/181 (18%), Positives = 69/181 (38%), Gaps = 40/181 (22%)
Query: 105 LLGQPNNSELWVKYMAYHLQ---ATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLE 161
L P+ ++W+ Y+ +Q ++E+ R + + L+ + ++ + + N E
Sbjct: 560 LFLFPHVQDIWITYLTKFIQRYAGMKLERTRDLFEQVLSKVP---PKESIIFYLMYANFE 616
Query: 162 HLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSV 221
YG + M +Y +A+ D E K+ L
Sbjct: 617 EQYGLAR--------------------HSMAVYDRAAKSVDKEDRFKMYL---------- 646
Query: 222 NIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLE 281
+Y+ A+ + Q R I + + LP + +FA E K+G+ RA+++
Sbjct: 647 -LYIHRASEFFGVNQ---TREIFSKAIEQLPDQYVRDMCLKFADMEKKYGEIDRARSIYI 702
Query: 282 H 282
H
Sbjct: 703 H 703
>sp|Q9DCD2|SYF1_MOUSE Pre-mRNA-splicing factor SYF1 OS=Mus musculus GN=Xab2 PE=2 SV=1
Length = 855
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 103/241 (42%), Gaps = 26/241 (10%)
Query: 107 GQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGT 166
G+P+ LWV + ++ +++ AR I +A T +N + +D +VW LE +
Sbjct: 392 GKPHT--LWVAFAKFYEDNGQLDDARVILEKA-TKVNFKQVDDLASVWCQCGELELRHEN 448
Query: 167 KESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQ 226
+ + L +A T + E + S +++ + + S+ ++
Sbjct: 449 YDEALKLLRKA------TALPARRAEYFDGSEPVQN-------------RVYKSLKVWSM 489
Query: 227 CATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTS 286
A L LG + + + R L+ + + L E+K+ + S +L
Sbjct: 490 LADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFK 549
Query: 287 YPARVDVWGVYVDMLVK---SDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGD 343
+P D+W Y+ + +++ R + ++A+ PPK K LY+ + +LEE++G
Sbjct: 550 WPNVSDIWSTYLTKFISRYGGRKLERARDLFEQAL-DGCPPKYAKTLYLLYAQLEEEWGL 608
Query: 344 A 344
A
Sbjct: 609 A 609
>sp|Q99PK0|SYF1_RAT Pre-mRNA-splicing factor SYF1 OS=Rattus norvegicus GN=Xab2 PE=2
SV=1
Length = 855
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 103/241 (42%), Gaps = 26/241 (10%)
Query: 107 GQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGT 166
G+P+ LWV + ++ +++ AR I +A T +N + +D +VW LE +
Sbjct: 392 GKPHT--LWVAFAKFYEDNGQLDDARVILEKA-TKVNFKQVDDLASVWCQCGELELRHEN 448
Query: 167 KESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQ 226
+ + L +A T + E + S +++ + + S+ ++
Sbjct: 449 YDEALKLLRKA------TALPARRAEYFDGSEPVQN-------------RVYKSLKVWSM 489
Query: 227 CATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTS 286
A L LG + + + R L+ + + L E+K+ + S +L
Sbjct: 490 LADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFK 549
Query: 287 YPARVDVWGVYVDMLVK---SDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGD 343
+P D+W Y+ + +++ R + ++A+ PPK K LY+ + +LEE++G
Sbjct: 550 WPNVSDIWSTYLTKFISRYGGRKLERARDLFEQAL-DGCPPKYAKTLYLLYAQLEEEWGL 608
Query: 344 A 344
A
Sbjct: 609 A 609
>sp|Q9HCS7|SYF1_HUMAN Pre-mRNA-splicing factor SYF1 OS=Homo sapiens GN=XAB2 PE=1 SV=2
Length = 855
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/242 (21%), Positives = 102/242 (42%), Gaps = 28/242 (11%)
Query: 107 GQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGT 166
G+P+ LWV + ++ +++ AR I +A T +N + +D +VW G
Sbjct: 392 GKPHT--LWVAFAKFYEDNGQLDDARVILEKA-TKVNFKQVDDLASVWCQC-------GE 441
Query: 167 KESLQECLHEAVRC-NDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYL 225
E E EA+R T + E + S +++ + + S+ ++
Sbjct: 442 LELRHENYDEALRLLRKATALPARRAEYFDGSEPVQN-------------RVYKSLKVWS 488
Query: 226 QCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLT 285
A L LG + + + R L+ + + L E+K+ + S +L
Sbjct: 489 MLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLF 548
Query: 286 SYPARVDVWGVYVDMLVK---SDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYG 342
+P D+W Y+ + +++ R + ++A+ PPK K LY+ + +LEE++G
Sbjct: 549 KWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQAL-DGCPPKYAKTLYLLYAQLEEEWG 607
Query: 343 DA 344
A
Sbjct: 608 LA 609
>sp|Q9BZJ0|CRNL1_HUMAN Crooked neck-like protein 1 OS=Homo sapiens GN=CRNKL1 PE=1 SV=4
Length = 848
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/260 (21%), Positives = 99/260 (38%), Gaps = 23/260 (8%)
Query: 101 FDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNL 160
+DR + P ++ W KY + AR + R + + EE W S +N
Sbjct: 299 WDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWM---EWQPEE---QAWHSYINF 352
Query: 161 EHLYGTKESLQECLHEAVRCNDETK---VYMNMMEIYAASAQIRDL-ESTVKLLLKKAGQ 216
E Y + + V + + K Y E +A A R + E V+ G
Sbjct: 353 ELRYKEVDRARTIYERFVLVHPDVKNWIKYARFEEKHAYFAHARKVYERAVEFF----GD 408
Query: 217 THSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGD---- 272
H ++Y+ A + + R I + L+ + L + + E KFGD
Sbjct: 409 EHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQDAQELFKNYTIFEKKFGDRRGI 468
Query: 273 ----ASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLK 328
S+ + E + + P D W Y+ ++ + R+V +RA+ +PP + K
Sbjct: 469 EDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIAN-VPPIQEK 527
Query: 329 PLYMKWLKLEEQYGDAEAVE 348
+ +++ L Y E +E
Sbjct: 528 RHWKRYIYLWINYALYEELE 547
Score = 36.2 bits (82), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 52/249 (20%), Positives = 92/249 (36%), Gaps = 35/249 (14%)
Query: 115 WVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLE----HLYGTKESL 170
W+KY + EI++ARSI RAL V + RN + +W +E + +
Sbjct: 245 WIKYAQWEESLKEIQRARSIYERALDV-DYRN----ITLWLKYAEMEMKNRQVNHARNIW 299
Query: 171 QECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATL 230
+ R N Y M E+ A R + + HS +N
Sbjct: 300 DRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQAWHSYIN-------F 352
Query: 231 LLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPAR 290
LR + D AR I +R + P + RF A H Y
Sbjct: 353 ELRYKEVDRARTIYERFVLVHPDVKNWIKYARF----------EEKHAYFAHARKVYERA 402
Query: 291 VDVWG-------VYVDML-VKSDRVDLGR-QVIQRAVTQKLPPKKLKPLYMKWLKLEEQY 341
V+ +G +YV + ++ + R +VI + ++ + + L+ + E+++
Sbjct: 403 VEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQDAQELFKNYTIFEKKF 462
Query: 342 GDAEAVENV 350
GD +E++
Sbjct: 463 GDRRGIEDI 471
>sp|Q54XP4|CRNL1_DICDI Crooked neck-like protein 1 OS=Dictyostelium discoideum GN=crnkl1
PE=3 SV=1
Length = 705
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/270 (20%), Positives = 112/270 (41%), Gaps = 33/270 (12%)
Query: 101 FDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNL 160
F++ +L P + W+KY + + IE AR+I +RA+ + +++L + +
Sbjct: 199 FEKYILVHPY-IKTWIKYTKFEERLGNIENARTIFQRAIEFLGEDGNDEQLFI--AFAKF 255
Query: 161 EHLYGTKESLQECLHEAV------RCNDETKVYMNMMEIYAASAQIRDLESTVKLL---- 210
E Y E + A+ R D + N + + I D+ K
Sbjct: 256 EEKYKEIERARVIYKYAIDHVPKSRAKDLFDTFTNFEKQHGDRIGIEDVVLGKKRFQYEE 315
Query: 211 -LKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPA-------VHVTLITR 262
+KK + + YL+ + G+ + R I +R + NLPP ++ L
Sbjct: 316 EIKKNSKNYDIWFDYLKMEEI---NGEIEKTREIYERSIGNLPPTNEKKHWKRYIYLWIN 372
Query: 263 FALAENKFG-DASRAQALLEHTLTSYPAR----VDVWGVYVDMLVKSDRVDLGRQVIQRA 317
+AL E D RA+++ + P + +W +Y + ++ +D R + +A
Sbjct: 373 YALFEELISKDMERARSVYSECIKLIPHKEFSFSKIWILYANFEIRQLNLDKARLIYGQA 432
Query: 318 VTQKLPPKKLKPLYMKWLKLEEQYGDAEAV 347
+ + PK ++ +++ LE + G+ + V
Sbjct: 433 IGRN--PK--SKIFDQYIHLEIELGNFDRV 458
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/283 (18%), Positives = 111/283 (39%), Gaps = 17/283 (6%)
Query: 82 IRQAEDELLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTV 141
I+ AE E+ ++ + +DR + P S+LW KY AR+I R +
Sbjct: 113 IKYAEMEMKNKNINLARNIWDRAVCLLPRVSQLWFKYTFMEDMLGNYPAARAIFERWMQW 172
Query: 142 INIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIR 201
+ W S L E E+ + + + + K ++ + I
Sbjct: 173 ------KPEPQAWNSYLKFEQRLKLFENTRLIFEKYILVHPYIKTWIKYTKFEERLGNIE 226
Query: 202 DLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLIT 261
+ + + ++ G+ + +++ A + + + AR I + ++++P + L
Sbjct: 227 NARTIFQRAIEFLGEDGNDEQLFIAFAKFEEKYKEIERARVIYKYAIDHVPKSRAKDLFD 286
Query: 262 RFALAENKFGDA--------SRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQV 313
F E + GD + + E + D+W Y+ M + ++ R++
Sbjct: 287 TFTNFEKQHGDRIGIEDVVLGKKRFQYEEEIKKNSKNYDIWFDYLKMEEINGEIEKTREI 346
Query: 314 IQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQ 356
+R++ LPP K + +++ L Y E E + K++E+
Sbjct: 347 YERSIGN-LPPTNEKKHWKRYIYLWINYALFE--ELISKDMER 386
Score = 35.4 bits (80), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 7/104 (6%)
Query: 247 GLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDR 306
G N A+++ ++A E D +RA+++ E L VW Y +M +K+
Sbjct: 69 GRNRKTAAIYI----KYAAWEESQKDLTRARSVFERFLDIDHRIPTVWIKYAEMEMKNKN 124
Query: 307 VDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENV 350
++L R + RAV LP ++ L+ K+ +E+ G+ A +
Sbjct: 125 INLARNIWDRAVCL-LP--RVSQLWFKYTFMEDMLGNYPAARAI 165
>sp|Q4P7S1|SYF1_USTMA Pre-mRNA-splicing factor SYF1 OS=Ustilago maydis (strain 521 / FGSC
9021) GN=SYF1 PE=3 SV=1
Length = 1081
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/280 (21%), Positives = 115/280 (41%), Gaps = 32/280 (11%)
Query: 112 SELWVKYMAYHLQATEIEKA-RSIARRALTVIN---IRNEEDRLNVWTSLLNLEHLYGTK 167
+E+W ++ L+ + ++A R++AR N I+ +D L T L L+
Sbjct: 680 AEIWCEWAEMELRHSNYDEAIRTMARSVAPPRNTKGIQYHDDTLPPQTRLFKSLKLWSFY 739
Query: 168 ESLQECLHEAVRCNDETKVYMNMMEIYAASAQI-----------RDLESTVKLLLKKAGQ 216
L+E L + +VY M+E+ ASAQI + E + K+ +
Sbjct: 740 VDLEESLGD---VESTKRVYEKMLELKIASAQIIINYAAFLEDNKYFEESFKVFERGVEL 796
Query: 217 THSSV-----NIYLQCATLLLRLG--QKDTARHILQRGLNNLPPAVHVTLITRFALAENK 269
V N+YL + + R G + + AR + ++ L+ P L+ + E +
Sbjct: 797 FSYPVAFEIWNVYL--SKFVKRYGGAKLERARDLFEQALDKCPARFCKPLMLMYGQLEEE 854
Query: 270 FGDASRAQALLEHTL--TSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKL 327
G RA + E S R D++ Y+ + + R + +RA+ + LP ++
Sbjct: 855 HGLVKRAMKIYERATRAVSTDDRFDMYVFYIAKAAATFGLAATRPIYERAI-ESLPDRQT 913
Query: 328 KPLYMKWLKLEEQYGDAEAVENVKKEIEQYV--RNSKNKW 365
+ +++ LE + G+ + + Q+ R + W
Sbjct: 914 AEMCLRFAALERKLGEIDRARVIYAHASQFCDPRTQTDFW 953
Score = 32.0 bits (71), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 241 RHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPAR--VDVWGVYV 298
R I +R + +LP + RFA E K G+ RA+ + H R D W +
Sbjct: 898 RPIYERAIESLPDRQTAEMCLRFAALERKLGEIDRARVIYAHASQFCDPRTQTDFWKEWN 957
Query: 299 DMLVKSDRVDLGRQV--IQRAVTQKL 322
+++ D R++ I+R+V +
Sbjct: 958 QFEIETGSEDTFREMLRIKRSVQAQF 983
>sp|Q6FW76|CLF1_CANGA Pre-mRNA-splicing factor CLF1 OS=Candida glabrata (strain ATCC 2001
/ CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=CLF1
PE=3 SV=1
Length = 695
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 66/142 (46%), Gaps = 8/142 (5%)
Query: 210 LLKKAGQTH-SSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAEN 268
+ ++A + H S V ++++ L+LG + AR+IL+R + LP L ++ + E
Sbjct: 83 IFERALRVHISYVPLWIRYIESELKLGYINHARNILERAITKLPRV--DKLWYKYLIVEE 140
Query: 269 KFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLK 328
+ L + + PA VW + D V+ +R + R + + V + P+
Sbjct: 141 SLAHFDIVRNLFQKWCSLEPA-AHVWDSFTDFEVRQERYEDVRNIYSKYVL--IHPQ--F 195
Query: 329 PLYMKWLKLEEQYGDAEAVENV 350
+ KW+ E +YG + V +V
Sbjct: 196 STWRKWINFEVRYGSTKTVRSV 217
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 262 RFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQK 321
R+A+ E + D RA+++ E L + + V +W Y++ +K ++ R +++RA+T K
Sbjct: 66 RYAVFEIEQHDMRRARSIFERALRVHISYVPLWIRYIESELKLGYINHARNILERAIT-K 124
Query: 322 LPPKKLKPLYMKWLKLEEQYGDAEAVENV 350
LP ++ L+ K+L +EE + V N+
Sbjct: 125 LP--RVDKLWYKYLIVEESLAHFDIVRNL 151
>sp|Q750X3|CLF1_ASHGO Pre-mRNA-splicing factor CLF1 OS=Ashbya gossypii (strain ATCC 10895
/ CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=CLF1 PE=3
SV=1
Length = 683
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 262 RFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQK 321
R+A E + D RA+++ E L P V VW YVD +++ V+ R ++ RA T
Sbjct: 65 RYAAFEYEQRDMRRARSVFERALAVAPGDVVVWLRYVDCELRARDVNHARNLLVRA-TAL 123
Query: 322 LPPKKLKPLYMKWLKLEEQYGDAEAVENV 350
LP ++ L+ K++ +EE G E V V
Sbjct: 124 LP--RVDKLWYKYVLMEESLGQVELVRGV 150
Score = 36.2 bits (82), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 81/208 (38%), Gaps = 20/208 (9%)
Query: 109 PNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKE 168
P +LW KY+ ++E R + + T+ E W + ++ E G E
Sbjct: 125 PRVDKLWYKYVLMEESLGQVELVRGVYTKWCTL------EPAAAAWDAFVDFETRQGQVE 178
Query: 169 SLQECLHEAVRCNDETKVYMNMMEI---YAASAQIRDLES-TVKLLLKKAG-QTHSSVNI 223
++E V + ++ + + + +R + S L AG H +
Sbjct: 179 HVREVYSRYVMVHPVAATWLKWVAFERKHGDAGTVRRVYSLACDTLTAFAGADVHEVEQL 238
Query: 224 YLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALL--- 280
+ A + + +R +L ++ P + TL A E KFG A +++L
Sbjct: 239 VVSFAEWEATQQELERSRAVLSVAVSRWPESS--TLKDATAQLEKKFGGARAGESILFKR 296
Query: 281 ----EHTLTSYPARVDVWGVYVDMLVKS 304
E L ++P D W +Y+D+L +S
Sbjct: 297 KREYEEQLLAHPLDYDAWWLYLDLLEES 324
>sp|P0CO08|SYF1_CRYNJ Pre-mRNA-splicing factor SYF1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=SYF1 PE=3 SV=1
Length = 1031
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 4/100 (4%)
Query: 265 LAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVK---SDRVDLGRQVIQRAVTQK 321
L ENK+ + S L +P ++W +Y+ VK +++ R + ++A+ +
Sbjct: 730 LEENKYFEESFKVYERGIELFHFPIAFEIWNIYLSKFVKRYGGKKLERARDLFEQAL-EN 788
Query: 322 LPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNS 361
P K KPLY+ + KLEE++G A+ + V++S
Sbjct: 789 CPEKFCKPLYLMYAKLEEEHGLAKRAMGIYDRAASTVQDS 828
Score = 40.4 bits (93), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 94/230 (40%), Gaps = 18/230 (7%)
Query: 101 FDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNL 160
+D+++ + N+++ V Y + + E++ + R + + + + N++ S
Sbjct: 709 YDKIMELKIANAQVIVNYATFLEENKYFEESFKVYERGIELFHFPIAFEIWNIYLS--KF 766
Query: 161 EHLYGTK--ESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQT- 217
YG K E ++ +A+ N K + +YA + L + +A T
Sbjct: 767 VKRYGGKKLERARDLFEQALE-NCPEKFCKPLYLMYAKLEEEHGLAKRAMGIYDRAASTV 825
Query: 218 -----HSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGD 272
IY+ AT L R I +R L +LP + RFA E K G+
Sbjct: 826 QDSDKFEMYTIYIAKATANFGL---PATRPIYERALESLPDKQTAEMCRRFARMERKLGE 882
Query: 273 ASRAQALLEHTLTSYPARV--DVWGVYVDMLVKSDRVDLGRQV--IQRAV 318
RA+A+ H R+ + W + D +++ D R++ I+RAV
Sbjct: 883 IDRARAIYAHASQFCDPRIEPEFWQEWNDFEIETGSEDTFREMLRIKRAV 932
>sp|P0CO09|SYF1_CRYNB Pre-mRNA-splicing factor SYF1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=SYF1 PE=3 SV=1
Length = 1031
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 4/100 (4%)
Query: 265 LAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVK---SDRVDLGRQVIQRAVTQK 321
L ENK+ + S L +P ++W +Y+ VK +++ R + ++A+ +
Sbjct: 730 LEENKYFEESFKVYERGIELFHFPIAFEIWNIYLSKFVKRYGGKKLERARDLFEQAL-EN 788
Query: 322 LPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNS 361
P K KPLY+ + KLEE++G A+ + V++S
Sbjct: 789 CPEKFCKPLYLMYAKLEEEHGLAKRAMGIYDRAASTVQDS 828
Score = 40.4 bits (93), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 94/230 (40%), Gaps = 18/230 (7%)
Query: 101 FDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNL 160
+D+++ + N+++ V Y + + E++ + R + + + + N++ S
Sbjct: 709 YDKIMELKIANAQVIVNYATFLEENKYFEESFKVYERGIELFHFPIAFEIWNIYLS--KF 766
Query: 161 EHLYGTK--ESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQT- 217
YG K E ++ +A+ N K + +YA + L + +A T
Sbjct: 767 VKRYGGKKLERARDLFEQALE-NCPEKFCKPLYLMYAKLEEEHGLAKRAMGIYDRAASTV 825
Query: 218 -----HSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGD 272
IY+ AT L R I +R L +LP + RFA E K G+
Sbjct: 826 QDSDKFEMYTIYIAKATANFGL---PATRPIYERALESLPDKQTAEMCRRFARMERKLGE 882
Query: 273 ASRAQALLEHTLTSYPARV--DVWGVYVDMLVKSDRVDLGRQV--IQRAV 318
RA+A+ H R+ + W + D +++ D R++ I+RAV
Sbjct: 883 IDRARAIYAHASQFCDPRIEPEFWQEWNDFEIETGSEDTFREMLRIKRAV 932
>sp|Q9P7R9|SYF1_SCHPO Pre-mRNA-splicing factor cwf3 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cwf3 PE=1 SV=1
Length = 790
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 14/136 (10%)
Query: 218 HSSVNIYLQCATLLLRLGQKDTARHILQR--GLNNLPPAV---HVTLITRFALAENKFGD 272
H S I++ L +G +T R + R L P V + L+ A E+ F
Sbjct: 477 HKSSKIWMYYLDLEESVGTIETTRKLYDRVFELKIATPQVVVNYANLLEENAYFEDSFKI 536
Query: 273 ASRAQALLEHTLTSYPARVDVWGVYVDMLVK---SDRVDLGRQVIQRAVTQKLPPKKLKP 329
R AL SYP ++W +Y+ VK ++ R + ++A+ + PP+ K
Sbjct: 537 YERGVALF-----SYPVAFELWNLYLTKFVKRYQGTHMERTRDLFEQAL-EGCPPEFSKS 590
Query: 330 LYMKWLKLEEQYGDAE 345
+Y+ + EE++G A+
Sbjct: 591 IYLLYADFEEKFGKAK 606
Score = 38.9 bits (89), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 72/345 (20%), Positives = 139/345 (40%), Gaps = 53/345 (15%)
Query: 51 EDEEEEV------EIKKVKPKLTKAEKLAAAKAEEARIRQAEDELLQNGEPVSPDGFDRM 104
ED+ E+V IK V PKL L +E AR + D+L Q+ R+
Sbjct: 363 EDDSEKVVQVYTDAIKNVNPKLAHG-SLGKLFSEFARFYENFDDLEQS----------RI 411
Query: 105 LLGQPNN---------SELWVKYMAYHLQATEIEKARSIARRAL-----TVINIRNE--- 147
+ + + +++W+ + L+ + AR + A+ + I+ +E
Sbjct: 412 IFEKATHVPYKTVNELAQVWIDWAEMELRHQNFDAARKLIGDAVHAPRKSHISFFDESLS 471
Query: 148 -EDRLN----VWTSLLNLEHLYGTKESLQECLHEAVRCNDET-KVYMNMMEIYAASAQIR 201
+ RL+ +W L+LE GT E+ ++ T +V +N + +A
Sbjct: 472 PQVRLHKSSKIWMYYLDLEESVGTIETTRKLYDRVFELKIATPQVVVNYANLLEENAYFE 531
Query: 202 DLESTVKLLLKKAGQTHSSV-----NIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVH 256
D + K+ + V N+YL + + R + ++ L PP
Sbjct: 532 D---SFKIYERGVALFSYPVAFELWNLYLTKFVKRYQGTHMERTRDLFEQALEGCPPEFS 588
Query: 257 VTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVK---SDRVDLGRQV 313
++ +A E KFG A R+ ++LE D +Y +LVK + V R V
Sbjct: 589 KSIYLLYADFEEKFGKAKRSISILEKAADKVKT-ADRLAIYNVLLVKVALNYGVLATRTV 647
Query: 314 IQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYV 358
++A+ + L ++K + +++ ++E + G+ + + QY
Sbjct: 648 YEKAI-ESLSDSEVKDMCLRFAEMETKLGEIDRARLIYIHGSQYC 691
>sp|P17886|CRN_DROME Protein crooked neck OS=Drosophila melanogaster GN=crn PE=2 SV=2
Length = 702
Score = 39.7 bits (91), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 97/251 (38%), Gaps = 53/251 (21%)
Query: 71 KLAAAKAEEARIRQAEDELLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYH-LQATEIE 129
+L A+ + +IR+ + + N P + F R + LW+ Y Y L+A + E
Sbjct: 333 RLIEAEGDRDQIRETYERAISNVPPANEKNFWRRYIY------LWINYALYEELEAEDAE 386
Query: 130 KARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMN 189
+ R I + L +I + + L LY E +RC
Sbjct: 387 RTRQIYKTCLELIPHKQ--------FTFSKLWLLYAQFE---------IRC--------- 420
Query: 190 MMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLN 249
++L+ K L G ++ L ++L + + R + ++ L
Sbjct: 421 -----------KELQRARKALGLAIGMCPRD-KLFRGYIDLEIQLREFERCRMLYEKFLE 468
Query: 250 NLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVD----VWGVYVDMLVKSD 305
P VT + +FA EN GD RA+A+ E L R+D +W Y+D V
Sbjct: 469 -FGPENCVTWM-KFAELENLLGDTDRARAIFE--LAVQQPRLDMPELLWKAYIDFEVALG 524
Query: 306 RVDLGRQVIQR 316
+L RQ+ +R
Sbjct: 525 ETELARQLYER 535
Score = 37.4 bits (85), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 78/368 (21%), Positives = 132/368 (35%), Gaps = 87/368 (23%)
Query: 51 EDEEEEVEIKKVKPKLTKAEKLAAAKAEEARIRQAEDELLQNGEPVSPDGFDRMLLGQPN 110
E +E ++EI PK ++ A ++ + + ED L +N RM++
Sbjct: 31 EAKERDLEILPPPPKQKISDPAELADYQQRKRKTFEDNLRKN----------RMVVSH-- 78
Query: 111 NSELWVKYMAYHLQATEIEKARSIARRAL---------------------TVINIRNEED 149
W+KY + Q EI++ARSI RAL V + RN D
Sbjct: 79 ----WIKYAQWEEQQQEIQRARSIWERALDNEHRNVTLWLKYAEMEMKNKQVNHARNLWD 134
Query: 150 RL--------NVWTSLLNLEHLYGTKESLQECLHEAVRCNDET---KVYMNM-------- 190
R W +E + ++ + E + Y+N
Sbjct: 135 RAVTIMPRVNQFWYKYTYMEEMLENVAGARQVFERWMEWQPEEQAWQTYVNFELRYKEID 194
Query: 191 --MEIYAASAQIR-DLESTVKL--LLKKAGQTHSSVNIY---------------LQCATL 230
EIY + D+++ +K + G H S ++ L A
Sbjct: 195 RAREIYERFVYVHPDVKNWIKFARFEESHGFIHGSRRVFERAVEFFGDDYIEERLFIAFA 254
Query: 231 LLRLGQK--DTARHILQRGLNNLPPAVHVTLITRFALAENKFGD--------ASRAQALL 280
GQK D AR I + L++LP L + E K+GD S+ +
Sbjct: 255 RFEEGQKEHDRARIIYKYALDHLPKDRTQELFKAYTKHEKKYGDRAGIEDVIVSKRKYQY 314
Query: 281 EHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQ 340
E + + P D W Y+ ++ D R+ +RA++ +PP K + +++ L
Sbjct: 315 EQEVAANPTNYDAWFDYLRLIEAEGDRDQIRETYERAISN-VPPANEKNFWRRYIYLWIN 373
Query: 341 YGDAEAVE 348
Y E +E
Sbjct: 374 YALYEELE 381
>sp|O60293|ZC3H1_HUMAN Zinc finger C3H1 domain-containing protein OS=Homo sapiens GN=ZFC3H1
PE=1 SV=3
Length = 1989
Score = 39.3 bits (90), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 12/154 (7%)
Query: 105 LLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVIN--IRNEEDRLNVWTSLLNLEH 162
+L P++ +LW+K +L E E + S+ AL V+ + N +D +W L L
Sbjct: 1354 VLENPSHVQLWLKLAYKYLNQNEGECSESLDS-ALNVLARALENNKDNPEIWCHYLRLFS 1412
Query: 163 LYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRD--LESTVKLLLKKAGQTHSS 220
GTK+ +QE AV + + + + + ++ + +D E ++ L+ A Q S+
Sbjct: 1413 KRGTKDEVQEMCETAVEYAPDYQSFWTFLHL-ESTFEEKDYVCERMLEFLMGAAKQETSN 1471
Query: 221 VNIYLQCATLLLRL------GQKDTARHILQRGL 248
+ + LL R+ G+ +A ILQ L
Sbjct: 1472 ILSFQLLEALLFRVQLHIFTGRCQSALAILQNAL 1505
>sp|Q5RCC2|PRP6_PONAB Pre-mRNA-processing factor 6 OS=Pongo abelii GN=PRPF6 PE=2 SV=1
Length = 941
Score = 38.9 bits (89), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 109/263 (41%), Gaps = 60/263 (22%)
Query: 111 NSELWVKYMAYHLQATEIEKARSIAR-----RALTVINIRNEEDRLNVWTSLLNLEHLYG 165
N E W++ A E ++A S+A RA+ I I EEDR + W
Sbjct: 502 NREQWIQ------DAEECDRAGSVATCQAVMRAVIGIGI-EEEDRKHTWM---------- 544
Query: 166 TKESLQECL-HEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIY 224
E C+ H A+ C IYA + Q+ + +V L G+ H
Sbjct: 545 --EDADSCVAHNALEC---------ARAIYAYALQVFPSKKSVWLRAAYFGKNH------ 587
Query: 225 LQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKF--GDASRAQALLEH 282
G +++ +LQR + + P A + L+ A++K+ GD A+++L
Sbjct: 588 ----------GTRESLEALLQRAVAHCPKAEVLWLMG----AKSKWLTGDVPAARSILAL 633
Query: 283 TLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYG 342
+ P ++W V + ++D + R+++ +A + + ++MK +KLE
Sbjct: 634 AFQANPNSEEIWLAAVKLESENDEYERARRLLAKARSSAPTAR----VFMKSVKLEWVQD 689
Query: 343 DAEAVENVKKEIEQYVRNSKNKW 365
+ A +++ +E ++ + W
Sbjct: 690 NIRAAQDLCEEALRHYEDFPKLW 712
>sp|Q7SAK5|SYF1_NEUCR Pre-mRNA-splicing factor syf-1 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=syf-1 PE=3 SV=1
Length = 829
Score = 38.9 bits (89), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 100/239 (41%), Gaps = 37/239 (15%)
Query: 113 ELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQE 172
+LW Y ++ ++ AR I +A+ V ++ + ++W + E E
Sbjct: 407 QLWTNYAKFYEAGGDLSSARRIMEKAVKV-PYKSVAELADMWIE-------WAEMELRNE 458
Query: 173 CLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLL---LKKAGQTHSSVNIYLQCAT 229
C EA M++ A + Q STV L + H S ++
Sbjct: 459 CFDEA-------------MKVMAKAVQAPK-RSTVDYFDETLSPQQRVHKSWKLWSFYVD 504
Query: 230 LLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFA--LAENKFGDASRAQALLEHTLTSY 287
L+ + D R + +R + L A T++ +A L E+K+ + S L SY
Sbjct: 505 LVESVSSLDETRKVYER-IFELRIATPQTVVN-YANLLEEHKYFEESFKIYERGLDLFSY 562
Query: 288 PARVDVWGVY----VDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYG 342
P ++W +Y VD + +R+ R + ++AV + PPK K +Y+ + LEE+ G
Sbjct: 563 PVAFELWNLYLTKAVDRKISIERL---RDLFEQAV-EDCPPKFAKVIYLMYGNLEEERG 617
>sp|Q4WVF4|SYF1_ASPFU Pre-mRNA-splicing factor syf1 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=syf1 PE=3
SV=1
Length = 839
Score = 38.5 bits (88), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 103/240 (42%), Gaps = 37/240 (15%)
Query: 112 SELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ 171
SELWV Y ++ +++ AR I +A+ V ++ + + W +E
Sbjct: 403 SELWVNYAKFYESGGDLDTARVIFDKAVKV-PFKSVAELADTWCEWAEME---------- 451
Query: 172 ECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLL---LKKAGQTHSSVNIYLQCA 228
+R + K ++I A + Q +STV L + H S ++
Sbjct: 452 ------LRSENFDKA----VDIMAKATQAPK-KSTVDYFDETLSPQQRVHKSWKLWSFYV 500
Query: 229 TLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFA--LAENKFGDASRAQALLEHTLTS 286
L+ + + R + +R + L A T++ +A L E+K+ + S L S
Sbjct: 501 DLVESVATLEETRKVYER-IFELRIATPQTVVN-YANLLEEHKYFEDSFKVYERGLDLFS 558
Query: 287 YPARVDVWGVY----VDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYG 342
YP ++W +Y VD + +R+ R + ++A+ PPK KPLY+ + LEE+ G
Sbjct: 559 YPVAFELWNLYLTKAVDRKIGIERL---RDLFEQAL-DGCPPKFAKPLYLMYGNLEEERG 614
>sp|Q6CJK2|CLF1_KLULA Pre-mRNA-splicing factor CLF1 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=CLF1 PE=3 SV=1
Length = 684
Score = 38.5 bits (88), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 262 RFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQK 321
R+A E D RA+++ E L + +W Y+D +K ++ R ++ RA T
Sbjct: 68 RYAQFEFDQKDIRRARSIYERALLVDHGFIPLWIQYIDSEIKWKNINHARNLLDRA-TNA 126
Query: 322 LPPKKLKPLYMKWLKLEEQYGDAEAVENV 350
LP ++ L+ K+L LEE G+ V +
Sbjct: 127 LP--RVDKLWFKYLLLEESLGNQGIVRGI 153
Score = 35.0 bits (79), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 26/133 (19%), Positives = 57/133 (42%), Gaps = 7/133 (5%)
Query: 218 HSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQ 277
H + +++Q ++ + AR++L R N LP L ++ L E G+ +
Sbjct: 94 HGFIPLWIQYIDSEIKWKNINHARNLLDRATNALPRVD--KLWFKYLLLEESLGNQGIVR 151
Query: 278 ALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKL 337
+ + P D W +++ + + R + + V + P+ ++KW++
Sbjct: 152 GIYTRWCSFEPG-PDAWDSFIEFETRCLNFENVRNIYSKFVL--VHPQI--DTWLKWVRF 206
Query: 338 EEQYGDAEAVENV 350
E+ +GD +V V
Sbjct: 207 EQTHGDISSVRTV 219
>sp|Q4PB37|CLF1_USTMA Pre-mRNA-splicing factor CLF1 OS=Ustilago maydis (strain 521 / FGSC
9021) GN=CLF1 PE=3 SV=1
Length = 781
Score = 38.1 bits (87), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 64/160 (40%), Gaps = 41/160 (25%)
Query: 220 SVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQAL 279
+++ +++ A+ G+ D R I +R L+ P H+ L R+ E K + A+ L
Sbjct: 69 NMSTWIKYASWEASQGEMDRCRSIYERALDVEPH--HLPLWLRYTEQELKMRNVQHARNL 126
Query: 280 LEHTLTSYPARVD----------------------------------VWGVYVDMLVKSD 305
+ ++ P R+D W Y+++ V+ D
Sbjct: 127 YDRAVSILP-RIDQLWYKYVHLEELLGNIPGTRQVFERWMKWEPEEKAWHAYINLEVRYD 185
Query: 306 RVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAE 345
+D + +R VT PK+ +++W K EE G+ E
Sbjct: 186 ELDRASAIWERCVTCHPVPKQ----WIRWAKFEEDRGNLE 221
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/203 (17%), Positives = 77/203 (37%), Gaps = 32/203 (15%)
Query: 101 FDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVI------------------ 142
++R L +P++ LW++Y L+ ++ AR++ RA++++
Sbjct: 93 YERALDVEPHHLPLWLRYTEQELKMRNVQHARNLYDRAVSILPRIDQLWYKYVHLEELLG 152
Query: 143 NIRNE----------EDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMME 192
NI E W + +NLE Y + V C+ K ++ +
Sbjct: 153 NIPGTRQVFERWMKWEPEEKAWHAYINLEVRYDELDRASAIWERCVTCHPVPKQWIRWAK 212
Query: 193 IYAASAQIRDLESTVKLLLKKAGQTHSSV----NIYLQCATLLLRLGQKDTARHILQRGL 248
+ ++ L G+ ++ +++ A + RL + + AR I + L
Sbjct: 213 FEEDRGNLEKARIVFQMALDYIGEDEDAMEKAQSVFTAFAKMETRLKEYERARVIYKYAL 272
Query: 249 NNLPPAVHVTLITRFALAENKFG 271
LP + + + + E +FG
Sbjct: 273 ERLPRSKSEGIYSSYTRFEKQFG 295
Score = 34.7 bits (78), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 50/277 (18%), Positives = 94/277 (33%), Gaps = 79/277 (28%)
Query: 111 NSELWVKYMAYHLQATEIEKARSIARRAL---------------------TVINIRNEED 149
N W+KY ++ E+++ RSI RAL V + RN D
Sbjct: 69 NMSTWIKYASWEASQGEMDRCRSIYERALDVEPHHLPLWLRYTEQELKMRNVQHARNLYD 128
Query: 150 RL--------NVWTSLLNLEHLYGTKESLQECLHEAVRCNDETK---VYMNMMEIYAASA 198
R +W ++LE L G ++ ++ E K Y+N+ Y
Sbjct: 129 RAVSILPRIDQLWYKYVHLEELLGNIPGTRQVFERWMKWEPEEKAWHAYINLEVRY---- 184
Query: 199 QIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHV- 257
D + ++ H +++ A G + AR + Q L+ +
Sbjct: 185 ---DELDRASAIWERCVTCHPVPKQWIRWAKFEEDRGNLEKARIVFQMALDYIGEDEDAM 241
Query: 258 ----TLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQV 313
++ T FA E + + RA+ + ++ L
Sbjct: 242 EKAQSVFTAFAKMETRLKEYERARVIYKYAL----------------------------- 272
Query: 314 IQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENV 350
++LP K + +Y + + E+Q+G +VE+
Sbjct: 273 ------ERLPRSKSEGIYSSYTRFEKQFGTMNSVEDT 303
Score = 32.3 bits (72), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 254 AVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQV 313
++++ ++A E G+ R +++ E L P + +W Y + +K V R +
Sbjct: 67 GLNMSTWIKYASWEASQGEMDRCRSIYERALDVEPHHLPLWLRYTEQELKMRNVQHARNL 126
Query: 314 IQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENV 350
RAV+ LP ++ L+ K++ LEE G+ V
Sbjct: 127 YDRAVS-ILP--RIDQLWYKYVHLEELLGNIPGTRQV 160
>sp|Q12381|PRP1_SCHPO Pre-mRNA-splicing factor prp1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=prp1 PE=1 SV=1
Length = 906
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 86/205 (41%), Gaps = 10/205 (4%)
Query: 137 RALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAA 196
RA+ ++R +W + LE LYGT ES+ L +AV + ++ + +YA
Sbjct: 530 RAVFAFSLRVYPKSEKLWLRAVELEKLYGTTESVCSILEKAVESCPKAEI---LWLLYAK 586
Query: 197 SAQ-IRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV 255
+ + D+ +L + +S I+L + + + AR +L R +
Sbjct: 587 ERKNVNDIAGARNILGRAFEYNSNSEEIWLAAVRIEFVNNENERARKLLARA--RIESGT 644
Query: 256 HVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQ 315
+L E + RA LLE+ L YP ++ + + ++++L R
Sbjct: 645 ERIWTKSISL-ERILDEKDRALQLLENALKIYPHYDKLYMMKGQIFEDKEQIELARDAYL 703
Query: 316 RAVTQKLPPKKLKPLYMKWLKLEEQ 340
K+ P + PL++ KLEE+
Sbjct: 704 AGT--KVCPYSI-PLWLLLAKLEEK 725
>sp|Q86UA1|PRP39_HUMAN Pre-mRNA-processing factor 39 OS=Homo sapiens GN=PRPF39 PE=1 SV=3
Length = 669
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Query: 271 GDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPL 330
G R L E + S + W Y + ++ ++ R V RA T LP K + +
Sbjct: 367 GTHERVVVLFERCVISCALYEEFWIKYAKYM-ENHSIEGVRHVFSRACTIHLPKKPM--V 423
Query: 331 YMKWLKLEEQYGDAEAVENVKKEIEQYV 358
+M W EEQ G+ N+ K E+ V
Sbjct: 424 HMLWAAFEEQQGNINEARNILKTFEECV 451
>sp|Q5BH69|SYF1_EMENI Pre-mRNA-splicing factor syf1 OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=syf1
PE=3 SV=1
Length = 851
Score = 37.4 bits (85), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 54/240 (22%), Positives = 101/240 (42%), Gaps = 37/240 (15%)
Query: 112 SELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ 171
SELWV Y ++ + +++ AR I +A+ V + + L
Sbjct: 420 SELWVNYAKFYERGGDLDTARIIFEKAVKVP---------------------FKSVNELA 458
Query: 172 ECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLL---LKKAGQTHSSVNIYLQCA 228
E E ++ + +EI A + Q +STV L + H S ++
Sbjct: 459 ETWCEWAEMELRSENFDKAVEIMAKATQAPK-KSTVDYFDETLSPQQRIHKSWKLWSFYV 517
Query: 229 TLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFA--LAENKFGDASRAQALLEHTLTS 286
L+ + + + + +R + L A T++ +A L E+K+ + S L +
Sbjct: 518 DLVESVSSIEETKKVYER-IFELRIATPQTVVN-YANLLEEHKYFEESFKVYERGLDLFT 575
Query: 287 YPARVDVWGVY----VDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYG 342
YP ++W +Y VD + +R+ R + ++A+ PPK +PLY+ + LEE+ G
Sbjct: 576 YPVAFELWNLYLTKAVDRKIGIERL---RDLFEQAL-DGCPPKFARPLYLMYGNLEEERG 631
>sp|Q4PCV8|RNA14_USTMA mRNA 3'-end-processing protein RNA14 OS=Ustilago maydis (strain 521
/ FGSC 9021) GN=RNA14 PE=3 SV=1
Length = 945
Score = 37.0 bits (84), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 65/157 (41%), Gaps = 4/157 (2%)
Query: 199 QIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVT 258
QIR E + G +S ++++ L R AR + R + P
Sbjct: 601 QIRKQELQAAAKPEIEGLKEASALVWIKYMHFLRRTEGIRPARSVFSRARKS--PHCTWQ 658
Query: 259 LITRFALAENKFG-DASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRA 317
+ AL E DA A + E L ++ + Y+D L+ + R + +R
Sbjct: 659 VFEASALMEYHCSKDAVVATKVFELALKTFGSDEAFVVRYLDFLISMNDDSNARALFER- 717
Query: 318 VTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEI 354
V P++ +P++ +W K E +GD+ A++ ++ +
Sbjct: 718 VIGTFAPERARPIWERWAKYEYNFGDSVAIQKLESRL 754
>sp|Q43947|GYRB_ACICA DNA gyrase subunit B (Fragment) OS=Acinetobacter calcoaceticus
GN=gyrB PE=3 SV=2
Length = 388
Score = 36.6 bits (83), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 23/176 (13%)
Query: 80 ARIRQAEDELLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRAL 139
+R Q ++ Q+G+P P ++G+ + S V++ L T+ I R L
Sbjct: 30 SRAGQVHEQEYQHGDPQYP----LRVIGETDKSGTTVRFWPSELTFTQTIFNVEILARRL 85
Query: 140 TVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQ 199
++ N R+ + +NLEH+Y + L E V+ +E K ++N EI+ +A
Sbjct: 86 RELSFLNAGVRIVLRDERINLEHVY----DYEGGLSEFVKYINEGKTHLN--EIFHFTA- 138
Query: 200 IRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHI------LQRGLN 249
D +S + ++ A Q + S ++C T + QKD H+ L RGLN
Sbjct: 139 --DTDSGIG--VEVALQWNESYQENVRCFT--NNIPQKDGGSHLAGFRAALTRGLN 188
>sp|Q12309|CLF1_YEAST Pre-mRNA-splicing factor CLF1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=CLF1 PE=1 SV=1
Length = 687
Score = 36.2 bits (82), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 262 RFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQK 321
R+A E + D RA+++ E L + + +W Y+D +K ++ R ++ RA++
Sbjct: 70 RYAQFEIEQHDMRRARSIFERALLVDSSFIPLWIRYIDAELKVKCINHARNLMNRAIS-T 128
Query: 322 LPPKKLKPLYMKWLKLEEQYGDAEAVENV 350
LP ++ L+ K+L +EE + E V ++
Sbjct: 129 LP--RVDKLWYKYLIVEESLNNVEIVRSL 155
Score = 32.3 bits (72), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 45/235 (19%), Positives = 95/235 (40%), Gaps = 15/235 (6%)
Query: 82 IRQAEDELLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTV 141
IR A+ E+ Q+ + F+R LL + LW++Y+ L+ I AR++ RA++
Sbjct: 69 IRYAQFEIEQHDMRRARSIFERALLVDSSFIPLWIRYIDAELKVKCINHARNLMNRAIST 128
Query: 142 INIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIR 201
+ D+L W L +E E ++ + + + ++ +IR
Sbjct: 129 L---PRVDKL--WYKYLIVEESLNNVEIVRSLYTKWCSLEPGVNAWNSFVDF-----EIR 178
Query: 202 DLE-STVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLI 260
+ V+ + K H + +L+ R G + R + ++ + ++ +
Sbjct: 179 QKNWNGVREIYSKYVMAHPQMQTWLKWVRFENRHGNTEFTRSVYSLAIDTVANLQNLQIW 238
Query: 261 TRFALAE--NKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQV 313
+ +A+ N F AQ E + Y ++ W + L+K+ +D +Q
Sbjct: 239 SDMEVAKLVNSFAHWEAAQQEYERSSALYQIAIEKWP--SNQLLKAGLLDFEKQF 291
>sp|P87312|CLF1_SCHPO Pre-mRNA-splicing factor cwf4 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cwf4 PE=1 SV=1
Length = 674
Score = 35.8 bits (81), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 274 SRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMK 333
+RA+++ E L + +W Y++ +K+ ++ R + RAVTQ LP ++ L+ K
Sbjct: 87 ARARSVFERALDVDSTYIPLWLKYIECEMKNRNINHARNLFDRAVTQ-LP--RVDKLWYK 143
Query: 334 WLKLEEQYGDAEAVENV 350
++ +EE G+ V
Sbjct: 144 YVYMEEMLGNITGCRQV 160
Score = 35.4 bits (80), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 48/250 (19%), Positives = 96/250 (38%), Gaps = 37/250 (14%)
Query: 115 WVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLE----HLYGTKESL 170
W++Y + L E +ARS+ RAL V + + +W + E ++ +
Sbjct: 73 WMRYGQWELDQKEFARARSVFERALDV-----DSTYIPLWLKYIECEMKNRNINHARNLF 127
Query: 171 QECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATL 230
+ + R + Y+ M E+ R + ++ + N ++ +
Sbjct: 128 DRAVTQLPRVDKLWYKYVYMEEMLGNITGCRQ-------VFERWLKWEPDENCWMSYIRM 180
Query: 231 LLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPAR 290
R + + AR I +R + P VT R+A E + G+A+ + + Y A
Sbjct: 181 ERRYHENERARGIYERFVVVHP---EVTNWLRWARFEEECGNAANVRQV-------YLAA 230
Query: 291 VDVWG----------VYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQ 340
+D G + ++ + R + + A+ +P K LY ++ E+Q
Sbjct: 231 IDALGQEFLNERFFIAFAKFEIRQKEYERARTIFKYAI-DFMPRSKSMELYKEYTHFEKQ 289
Query: 341 YGDAEAVENV 350
+GD VE+
Sbjct: 290 FGDHLGVEST 299
>sp|Q91YR7|PRP6_MOUSE Pre-mRNA-processing factor 6 OS=Mus musculus GN=Prpf6 PE=2 SV=1
Length = 941
Score = 35.8 bits (81), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 92/216 (42%), Gaps = 15/216 (6%)
Query: 128 IEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVY 187
+E AR+I AL V + +VW E +GT+ESL+ L AV + +V
Sbjct: 556 LECARAIYAYALQVF-----PSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVL 610
Query: 188 MNMMEIYAASAQIRDLESTVKLLLKKAGQTH-SSVNIYLQCATLLLRLGQKDTARHILQR 246
M A S + + +L A Q + +S I+L L + + AR +L +
Sbjct: 611 WLMG---AKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYERARRLLAK 667
Query: 247 GLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDR 306
++ P A + + E G+ S AQ L E L Y +W + + + +
Sbjct: 668 ARSSAPTA---RVFMKSVKLEWVLGNISAAQELCEEALRHYEDFPKLWMMKGQIEEQGEL 724
Query: 307 VDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYG 342
++ R+ + + +K P PL++ +LEE+ G
Sbjct: 725 MEKAREAYNQGL-KKCP--HSTPLWLLLSRLEEKIG 757
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 10/172 (5%)
Query: 76 KAEEARIRQAEDELLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIA 135
KAE + A+ + L P + PN+ E+W+ + + E E+AR +
Sbjct: 606 KAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYERARRLL 665
Query: 136 RRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVR-CNDETKVYMNMMEIY 194
+A R+ V+ + LE + G + QE EA+R D K++M +I
Sbjct: 666 AKA------RSSAPTARVFMKSVKLEWVLGNISAAQELCEEALRHYEDFPKLWMMKGQIE 719
Query: 195 AASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQR 246
+ LKK S ++L + L ++GQ AR IL++
Sbjct: 720 EQGELMEKAREAYNQGLKKCPH---STPLWLLLSRLEEKIGQLTRARAILEK 768
>sp|Q6BSP7|CLF1_DEBHA Pre-mRNA-splicing factor CLF1 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=CLF1 PE=3 SV=2
Length = 714
Score = 35.0 bits (79), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 52/291 (17%), Positives = 113/291 (38%), Gaps = 54/291 (18%)
Query: 82 IRQAEDELLQNGE-PVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALT 140
+R A+ E+ N + P + F+R L + W Y+ + L I AR++ RA+T
Sbjct: 72 LRYAKWEVKHNHDFPRARSIFERALEVNVQHIPFWTHYIQFELSHKNITHARNLLDRAVT 131
Query: 141 ---------VINIRNEEDRLN-------------------VWTSLLNLEHLYGTKESLQE 172
+ ++ EE N W + +N E Y ++ +E
Sbjct: 132 TLPRVDKLWFLYVQTEETLKNYQMVRIIFERWLSWNPNPSAWDAYINYEKRYDEYDNARE 191
Query: 173 CLHEAVRCNDETKVYMN-----MMEIYAASAQIRDLESTVKL-----LLKKAGQTHSSVN 222
V+ + ++++ M ++ Q++ + + +L L +A + S+
Sbjct: 192 IYIRYVQIHSSGEIWLKWIDFEMNDVPIDPEQVKRIRNVFELSVDSMLASEALRGDISLA 251
Query: 223 IYLQCATLL-LRLGQKDTARHILQRGLNN------LPPAVHVTLITRFALAENKFGDASR 275
+ +L + + + + AR I Q L + + P + + + E +GD
Sbjct: 252 EIINKWSLWEISVKEYERARAIFQLMLKSDTIQEIITPEQRNQIYSSYTEFEKSYGDKDT 311
Query: 276 AQALL--------EHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAV 318
++ + E + P+ D W Y+ +L + D ++ R+ +RA+
Sbjct: 312 IESSIMIKRKLKYEEEVNKSPSDYDSWWSYISILQQEDNNEVTRETFERAI 362
>sp|Q2KJJ0|PRP6_BOVIN Pre-mRNA-processing factor 6 OS=Bos taurus GN=PRPF6 PE=2 SV=1
Length = 941
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 46/219 (21%), Positives = 80/219 (36%), Gaps = 44/219 (20%)
Query: 76 KAEEARIRQAEDELLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIA 135
KAE + A+ + L P + PN+ E+W+ + + E E+AR +
Sbjct: 606 KAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYERARRLL 665
Query: 136 RRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYA 195
+A R+ V+ + LE + G + QE EA+ K Y + +++
Sbjct: 666 AKA------RSSAPTARVFMKSVKLEWVLGNLVAAQELCEEAL------KHYEDFPKLWM 713
Query: 196 ASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV 255
QI + E V + AR +GL P +
Sbjct: 714 MKGQIEEQEELV------------------------------EKAREAYNQGLKKCPHST 743
Query: 256 HVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVW 294
+ L+ + E K G +RA+A+LE + P +W
Sbjct: 744 PLWLL--LSRLEEKVGQLTRARAILEKSRLKNPKNPGLW 780
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 91/216 (42%), Gaps = 15/216 (6%)
Query: 128 IEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVY 187
+E AR+I AL V + +VW E +GT+ESL+ L AV + +V
Sbjct: 556 LECARAIYAYALQVF-----PSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVL 610
Query: 188 MNMMEIYAASAQIRDLESTVKLLLKKAGQTH-SSVNIYLQCATLLLRLGQKDTARHILQR 246
M A S + + +L A Q + +S I+L L + + AR +L +
Sbjct: 611 WLMG---AKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYERARRLLAK 667
Query: 247 GLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDR 306
++ P A + + E G+ AQ L E L Y +W + + + +
Sbjct: 668 ARSSAPTA---RVFMKSVKLEWVLGNLVAAQELCEEALKHYEDFPKLWMMKGQIEEQEEL 724
Query: 307 VDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYG 342
V+ R+ + + +K P PL++ +LEE+ G
Sbjct: 725 VEKAREAYNQGL-KKCP--HSTPLWLLLSRLEEKVG 757
>sp|A1A5S1|PRP6_RAT Pre-mRNA-processing factor 6 OS=Rattus norvegicus GN=Prpf6 PE=2
SV=1
Length = 941
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 92/216 (42%), Gaps = 15/216 (6%)
Query: 128 IEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVY 187
+E AR+I AL V + +VW E +GT+ESL+ L AV + +V
Sbjct: 556 LECARAIYAYALQVF-----PSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVL 610
Query: 188 MNMMEIYAASAQIRDLESTVKLLLKKAGQTH-SSVNIYLQCATLLLRLGQKDTARHILQR 246
M A S + + +L A Q + +S I+L L + + AR +L +
Sbjct: 611 WLMG---AKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYERARRLLAK 667
Query: 247 GLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDR 306
++ P A + + E G+ + AQ L E L Y +W + + + +
Sbjct: 668 ARSSAPTA---RVFMKSVKLEWVLGNITAAQELCEEALRHYEDFPKLWMMKGQIEEQGEL 724
Query: 307 VDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYG 342
++ R+ + + +K P PL++ +LEE+ G
Sbjct: 725 MERAREAYNQGL-KKCP--HSTPLWLLLSRLEEKIG 757
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 10/172 (5%)
Query: 76 KAEEARIRQAEDELLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIA 135
KAE + A+ + L P + PN+ E+W+ + + E E+AR +
Sbjct: 606 KAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYERARRLL 665
Query: 136 RRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVR-CNDETKVYMNMMEIY 194
+A R+ V+ + LE + G + QE EA+R D K++M +I
Sbjct: 666 AKA------RSSAPTARVFMKSVKLEWVLGNITAAQELCEEALRHYEDFPKLWMMKGQIE 719
Query: 195 AASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQR 246
+ LKK S ++L + L ++GQ AR IL++
Sbjct: 720 EQGELMERAREAYNQGLKKCPH---STPLWLLLSRLEEKIGQLTRARAILEK 768
>sp|O16883|CPG4_CAEEL Chondroitin proteoglycan 4 OS=Caenorhabditis elegans GN=cpg-4 PE=1
SV=3
Length = 782
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 173 CLHEAVRCNDETKVYMNMMEI---YAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCAT 229
C++E RCN E + M Y Q +T+K + +AG S + Q
Sbjct: 174 CVNEDTRCNKEDRDMFETMTSGLNYMCVEQKLAFNATIKCIDDEAGVVQSECDTQCQTKN 233
Query: 230 LLLRLGQKDTARHILQRGLNNLPPAVHVT 258
L + K + +Q+G+N + A T
Sbjct: 234 LFMNWMMKTAFQDTIQQGVNGIVGAATGT 262
>sp|Q52DF3|SYF1_MAGO7 Pre-mRNA-splicing factor SYF1 OS=Magnaporthe oryzae (strain 70-15 /
ATCC MYA-4617 / FGSC 8958) GN=SYF1 PE=3 SV=2
Length = 832
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 98/236 (41%), Gaps = 31/236 (13%)
Query: 113 ELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQE 172
+LW Y ++ + ++ AR I +A+ V ++ + ++W + E +
Sbjct: 410 QLWANYAKFYERGGDLRSARIIMEKAVKV-PFKSVVELADMWIE-------WAEMELRND 461
Query: 173 CLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLL 232
EAVR + A A R L + H S ++ L+
Sbjct: 462 NFEEAVRIMAK-----------AVQAPKRSTVDYFDETLTPQQRVHKSWKLWSFYVDLVE 510
Query: 233 RLGQKDTARHILQRGLNNLPPAVHVTLITRFA--LAENKFGDASRAQALLEHTLTSYPAR 290
+G + + + +R + L A T++ +A L E+K+ + S L SYP
Sbjct: 511 SVGTLEDTKKVYER-IFELRIATPQTVVN-YANLLEEHKYYEESFKIYERGLDLFSYPVA 568
Query: 291 VDVWGVY----VDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYG 342
++W +Y VD + +R+ R + ++AV + PPK K +Y+ + LEE+ G
Sbjct: 569 FELWNMYLTKAVDRKISIERL---RDLFEQAV-EGCPPKFAKIIYLMYGNLEEERG 620
>sp|Q7VYS6|T23O_BORPE Tryptophan 2,3-dioxygenase OS=Bordetella pertussis (strain Tohama I
/ ATCC BAA-589 / NCTC 13251) GN=kynA PE=3 SV=1
Length = 284
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 87 DELLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQA 125
DELL P+SP+ + + + Q SELW+K M + L+A
Sbjct: 35 DELLGAQHPLSPEHNEMLFIVQHQTSELWMKLMLHELRA 73
>sp|Q7WHE8|T23O_BORBR Tryptophan 2,3-dioxygenase OS=Bordetella bronchiseptica (strain
ATCC BAA-588 / NCTC 13252 / RB50) GN=kynA PE=3 SV=1
Length = 284
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 87 DELLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQA 125
DELL P+SP+ + + + Q SELW+K M + L+A
Sbjct: 35 DELLGAQHPLSPEHNEMLFIVQHQTSELWMKLMLHELRA 73
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.129 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127,464,729
Number of Sequences: 539616
Number of extensions: 5103927
Number of successful extensions: 21402
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 157
Number of HSP's that attempted gapping in prelim test: 20851
Number of HSP's gapped (non-prelim): 551
length of query: 365
length of database: 191,569,459
effective HSP length: 119
effective length of query: 246
effective length of database: 127,355,155
effective search space: 31329368130
effective search space used: 31329368130
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)