Query psy17788
Match_columns 365
No_of_seqs 327 out of 2024
Neff 9.2
Searched_HMMs 46136
Date Fri Aug 16 23:02:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17788.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17788hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1070|consensus 100.0 4.1E-55 8.9E-60 438.6 31.0 347 15-364 1356-1707(1710)
2 KOG1915|consensus 100.0 3.2E-27 7E-32 217.0 30.6 258 93-360 88-398 (677)
3 KOG1915|consensus 99.9 4.4E-25 9.6E-30 203.0 24.6 238 100-350 61-302 (677)
4 KOG0495|consensus 99.9 1.2E-23 2.7E-28 199.9 26.7 256 96-365 534-790 (913)
5 KOG0495|consensus 99.9 8.2E-23 1.8E-27 194.3 26.8 260 92-365 598-888 (913)
6 KOG4626|consensus 99.9 1E-22 2.2E-27 192.8 21.1 252 92-356 198-450 (966)
7 KOG4626|consensus 99.9 1.4E-22 2.9E-27 191.9 20.0 258 87-357 158-417 (966)
8 KOG2047|consensus 99.9 5.2E-21 1.1E-25 181.8 29.7 264 94-363 363-728 (835)
9 TIGR00990 3a0801s09 mitochondr 99.9 1.3E-20 2.9E-25 191.1 33.9 261 86-360 134-499 (615)
10 PRK15174 Vi polysaccharide exp 99.9 2.7E-20 5.9E-25 189.2 34.4 253 92-357 90-381 (656)
11 TIGR00990 3a0801s09 mitochondr 99.9 1E-20 2.2E-25 191.9 31.1 252 96-360 312-574 (615)
12 PRK15174 Vi polysaccharide exp 99.9 2.9E-20 6.4E-25 188.9 32.9 266 79-357 42-347 (656)
13 PRK11788 tetratricopeptide rep 99.9 1.1E-19 2.3E-24 174.4 32.9 260 90-359 47-313 (389)
14 TIGR02917 PEP_TPR_lipo putativ 99.9 7E-20 1.5E-24 192.0 32.6 255 92-355 615-898 (899)
15 TIGR02917 PEP_TPR_lipo putativ 99.9 2.5E-19 5.4E-24 187.8 33.4 253 92-357 479-732 (899)
16 PF13429 TPR_15: Tetratricopep 99.9 2.1E-21 4.5E-26 178.1 12.9 259 89-359 19-279 (280)
17 KOG1070|consensus 99.9 1.2E-19 2.7E-24 184.4 24.8 211 133-357 1445-1663(1710)
18 PRK11447 cellulose synthase su 99.9 9.7E-19 2.1E-23 188.7 32.9 253 92-357 365-700 (1157)
19 PRK11447 cellulose synthase su 99.8 1.9E-18 4.2E-23 186.4 32.9 201 92-297 283-535 (1157)
20 KOG2047|consensus 99.8 4.4E-19 9.6E-24 168.8 23.5 252 104-360 341-618 (835)
21 KOG1126|consensus 99.8 1.8E-19 3.9E-24 172.8 20.3 254 95-356 336-619 (638)
22 PRK11788 tetratricopeptide rep 99.8 1.1E-17 2.4E-22 160.4 29.2 233 116-358 39-279 (389)
23 PRK09782 bacteriophage N4 rece 99.8 1.8E-17 3.9E-22 173.2 32.8 242 97-354 495-737 (987)
24 PRK09782 bacteriophage N4 rece 99.8 1.8E-17 3.9E-22 173.1 30.4 249 96-360 459-709 (987)
25 KOG0547|consensus 99.8 1.6E-17 3.4E-22 154.2 24.6 238 87-335 335-578 (606)
26 KOG1155|consensus 99.8 4.8E-17 1E-21 150.2 27.0 247 98-357 247-495 (559)
27 PRK12370 invasion protein regu 99.8 2.3E-17 4.9E-22 165.1 27.2 243 96-354 279-532 (553)
28 PF13429 TPR_15: Tetratricopep 99.8 1.3E-18 2.8E-23 159.6 14.9 216 92-319 58-276 (280)
29 TIGR00540 hemY_coli hemY prote 99.8 2.2E-15 4.7E-20 145.5 34.2 276 80-363 86-405 (409)
30 COG3063 PilF Tfp pilus assembl 99.8 2.1E-16 4.5E-21 134.4 23.4 202 151-358 35-237 (250)
31 TIGR02521 type_IV_pilW type IV 99.8 4.5E-16 9.8E-21 136.9 26.5 199 112-318 31-230 (234)
32 PRK12370 invasion protein regu 99.8 4.9E-16 1.1E-20 155.5 29.4 236 108-358 252-503 (553)
33 KOG1155|consensus 99.8 2E-16 4.3E-21 146.1 24.1 254 94-357 278-536 (559)
34 PRK10049 pgaA outer membrane p 99.8 8.2E-16 1.8E-20 159.4 31.4 255 92-357 97-422 (765)
35 PF05843 Suf: Suppressor of fo 99.8 7.4E-18 1.6E-22 154.0 13.8 136 222-360 2-139 (280)
36 TIGR02521 type_IV_pilW type IV 99.8 9.4E-16 2E-20 134.9 26.8 201 150-356 30-231 (234)
37 PRK10049 pgaA outer membrane p 99.8 1.6E-15 3.4E-20 157.4 32.0 266 88-359 125-458 (765)
38 PLN03218 maturation of RBCL 1; 99.8 3E-15 6.6E-20 157.6 33.8 249 96-355 490-746 (1060)
39 KOG1126|consensus 99.7 5.8E-17 1.3E-21 155.7 17.7 210 104-325 413-623 (638)
40 PRK10747 putative protoheme IX 99.7 1.1E-14 2.4E-19 140.0 33.7 265 82-360 88-393 (398)
41 PRK11189 lipoprotein NlpI; Pro 99.7 2.1E-15 4.5E-20 139.3 27.0 228 98-342 46-285 (296)
42 PLN03218 maturation of RBCL 1; 99.7 8.3E-15 1.8E-19 154.3 32.9 237 111-355 436-676 (1060)
43 COG2956 Predicted N-acetylgluc 99.7 1E-14 2.2E-19 129.5 27.6 259 86-351 43-306 (389)
44 KOG1125|consensus 99.7 5.9E-16 1.3E-20 146.7 19.3 256 87-351 293-565 (579)
45 KOG2002|consensus 99.7 5.6E-15 1.2E-19 147.0 26.4 258 96-362 148-447 (1018)
46 COG3063 PilF Tfp pilus assembl 99.7 7.9E-15 1.7E-19 124.8 22.1 192 113-312 36-228 (250)
47 KOG1173|consensus 99.7 3E-15 6.5E-20 141.4 20.1 230 103-342 303-541 (611)
48 KOG0547|consensus 99.7 1.2E-14 2.6E-19 135.2 22.9 237 112-361 326-570 (606)
49 KOG2076|consensus 99.7 3.3E-14 7.1E-19 140.7 27.2 165 77-249 138-308 (895)
50 PLN03081 pentatricopeptide (PP 99.7 1.6E-14 3.4E-19 148.9 26.3 247 92-357 273-523 (697)
51 PLN03081 pentatricopeptide (PP 99.7 2.7E-14 5.8E-19 147.2 26.2 259 85-356 296-556 (697)
52 KOG1173|consensus 99.6 5.4E-14 1.2E-18 133.0 23.5 253 92-357 258-518 (611)
53 TIGR00540 hemY_coli hemY prote 99.6 1.4E-13 3E-18 133.0 25.6 219 92-320 167-399 (409)
54 PRK11189 lipoprotein NlpI; Pro 99.6 5.9E-13 1.3E-17 122.9 26.4 221 125-357 39-265 (296)
55 KOG1914|consensus 99.6 5.1E-13 1.1E-17 125.8 25.8 238 113-359 238-503 (656)
56 KOG1129|consensus 99.6 1.1E-13 2.3E-18 123.2 18.8 229 116-358 227-459 (478)
57 PLN03077 Protein ECB2; Provisi 99.6 2.4E-13 5.3E-18 143.2 25.2 254 87-355 331-616 (857)
58 PRK10747 putative protoheme IX 99.6 7.8E-13 1.7E-17 127.2 26.2 215 92-320 132-390 (398)
59 PLN03077 Protein ECB2; Provisi 99.6 5.9E-13 1.3E-17 140.3 27.5 249 87-353 432-716 (857)
60 KOG2002|consensus 99.6 9.5E-13 2.1E-17 131.4 27.0 261 92-359 178-483 (1018)
61 PF05843 Suf: Suppressor of fo 99.6 1.1E-13 2.4E-18 126.5 17.2 141 152-295 2-145 (280)
62 KOG1840|consensus 99.6 3.1E-12 6.7E-17 124.0 27.8 254 109-362 196-484 (508)
63 PLN02789 farnesyltranstransfer 99.6 2.6E-12 5.7E-17 119.0 25.5 203 92-304 51-268 (320)
64 COG2956 Predicted N-acetylgluc 99.5 6.3E-12 1.4E-16 112.0 24.4 225 123-357 46-278 (389)
65 KOG1914|consensus 99.5 1.1E-11 2.3E-16 117.1 26.0 251 96-356 37-359 (656)
66 PLN02789 farnesyltranstransfer 99.5 1.6E-11 3.6E-16 113.7 27.2 218 108-338 33-265 (320)
67 PRK14574 hmsH outer membrane p 99.5 2.1E-11 4.6E-16 125.6 30.3 86 92-183 116-201 (822)
68 KOG1125|consensus 99.5 1.6E-12 3.5E-17 123.6 20.2 232 116-360 289-530 (579)
69 KOG4162|consensus 99.5 4.6E-12 1E-16 123.9 23.8 255 96-359 462-785 (799)
70 TIGR03302 OM_YfiO outer membra 99.5 4.4E-12 9.5E-17 113.2 21.7 188 108-319 29-231 (235)
71 KOG1129|consensus 99.5 1.8E-12 3.9E-17 115.5 18.5 241 109-356 178-423 (478)
72 KOG2076|consensus 99.5 1.7E-11 3.8E-16 121.7 26.3 238 107-353 202-508 (895)
73 TIGR03302 OM_YfiO outer membra 99.5 6.3E-12 1.4E-16 112.1 21.0 182 151-356 33-231 (235)
74 KOG1258|consensus 99.5 4.1E-11 8.8E-16 115.1 27.2 248 94-348 95-420 (577)
75 KOG1258|consensus 99.5 4.5E-11 9.7E-16 114.8 27.4 251 99-358 66-396 (577)
76 KOG0624|consensus 99.5 3.8E-11 8.2E-16 107.8 24.0 270 85-360 78-373 (504)
77 PRK15359 type III secretion sy 99.5 3.9E-12 8.4E-17 104.6 15.7 125 171-302 13-137 (144)
78 KOG1174|consensus 99.4 5.9E-11 1.3E-15 108.9 23.7 251 92-356 246-499 (564)
79 cd05804 StaR_like StaR_like; a 99.4 2.5E-10 5.4E-15 108.1 29.1 260 92-360 20-296 (355)
80 PRK14574 hmsH outer membrane p 99.4 4.8E-11 1E-15 123.0 25.6 202 104-316 26-228 (822)
81 cd05804 StaR_like StaR_like; a 99.4 5.7E-11 1.2E-15 112.5 22.9 205 107-319 1-214 (355)
82 KOG2003|consensus 99.4 4.4E-11 9.6E-16 110.8 19.9 242 88-342 464-708 (840)
83 KOG3060|consensus 99.4 2.9E-10 6.3E-15 98.4 23.6 199 92-300 25-234 (289)
84 KOG1840|consensus 99.4 6.1E-11 1.3E-15 115.1 21.8 235 85-319 205-478 (508)
85 KOG2003|consensus 99.4 1.4E-10 3E-15 107.5 22.6 267 78-358 419-690 (840)
86 PRK15179 Vi polysaccharide bio 99.4 1.7E-10 3.8E-15 116.9 24.6 133 183-320 85-217 (694)
87 PRK14720 transcript cleavage f 99.4 1.7E-10 3.7E-15 118.1 24.3 140 100-250 17-178 (906)
88 PRK15359 type III secretion sy 99.4 2.4E-11 5.3E-16 99.9 14.6 123 99-232 14-137 (144)
89 PRK10370 formate-dependent nit 99.4 5.9E-11 1.3E-15 102.9 17.1 119 197-320 52-173 (198)
90 KOG3060|consensus 99.3 5.9E-10 1.3E-14 96.5 22.7 186 166-359 27-222 (289)
91 PRK10370 formate-dependent nit 99.3 1.3E-10 2.8E-15 100.8 18.5 125 164-293 52-180 (198)
92 PRK15179 Vi polysaccharide bio 99.3 1.5E-10 3.2E-15 117.4 21.7 165 186-358 51-218 (694)
93 KOG1128|consensus 99.3 6.1E-11 1.3E-15 115.6 17.9 221 113-360 399-619 (777)
94 KOG2396|consensus 99.3 1.7E-09 3.7E-14 101.7 24.8 98 261-361 464-563 (568)
95 PRK14720 transcript cleavage f 99.3 5E-10 1.1E-14 114.7 21.8 245 85-339 37-302 (906)
96 KOG1174|consensus 99.3 9.6E-10 2.1E-14 101.0 21.0 220 110-343 298-520 (564)
97 KOG1128|consensus 99.3 3.1E-10 6.7E-15 110.8 18.3 205 92-320 412-616 (777)
98 COG5107 RNA14 Pre-mRNA 3'-end 99.3 6.1E-10 1.3E-14 103.3 18.9 241 100-360 290-534 (660)
99 KOG0548|consensus 99.2 5.1E-09 1.1E-13 99.3 24.6 261 92-360 16-458 (539)
100 COG3071 HemY Uncharacterized e 99.2 7.5E-08 1.6E-12 88.5 31.0 258 89-359 95-392 (400)
101 KOG1156|consensus 99.2 9.4E-09 2E-13 99.4 26.3 72 92-168 55-126 (700)
102 TIGR02552 LcrH_SycD type III s 99.2 5.6E-10 1.2E-14 90.5 15.6 116 173-293 5-121 (135)
103 KOG4162|consensus 99.2 1.2E-08 2.7E-13 100.3 25.7 219 128-357 460-749 (799)
104 TIGR02552 LcrH_SycD type III s 99.2 8.2E-10 1.8E-14 89.5 14.6 111 205-320 4-114 (135)
105 COG4783 Putative Zn-dependent 99.2 1E-08 2.2E-13 96.5 23.5 232 76-319 198-436 (484)
106 COG5010 TadD Flp pilus assembl 99.2 3.5E-09 7.5E-14 92.4 18.9 177 97-284 52-229 (257)
107 PF12569 NARP1: NMDA receptor- 99.2 2.1E-08 4.5E-13 98.5 26.2 246 92-350 18-284 (517)
108 KOG0624|consensus 99.2 2E-08 4.2E-13 90.6 23.2 221 92-320 120-370 (504)
109 KOG0548|consensus 99.2 1.4E-08 3.1E-13 96.3 22.8 220 92-319 238-488 (539)
110 KOG0550|consensus 99.1 1.9E-09 4.2E-14 99.1 16.4 254 94-358 65-351 (486)
111 KOG1127|consensus 99.1 1.5E-09 3.1E-14 109.1 16.1 218 92-319 472-699 (1238)
112 KOG1127|consensus 99.1 5.8E-09 1.3E-13 104.9 20.1 187 165-357 472-659 (1238)
113 COG5010 TadD Flp pilus assembl 99.1 2E-08 4.2E-13 87.7 20.7 159 151-315 67-226 (257)
114 KOG1156|consensus 99.1 5.5E-08 1.2E-12 94.2 25.3 220 92-319 21-247 (700)
115 COG5107 RNA14 Pre-mRNA 3'-end 99.1 1.2E-07 2.5E-12 88.5 24.9 163 101-269 31-208 (660)
116 COG3071 HemY Uncharacterized e 99.0 3.7E-07 8.1E-12 84.0 25.4 232 81-321 156-391 (400)
117 PF12569 NARP1: NMDA receptor- 99.0 3E-07 6.6E-12 90.4 26.4 262 88-359 47-336 (517)
118 COG4783 Putative Zn-dependent 99.0 1.2E-07 2.6E-12 89.5 21.5 163 109-298 303-466 (484)
119 PLN03088 SGT1, suppressor of 99.0 1.7E-08 3.7E-13 95.5 15.6 110 189-303 7-116 (356)
120 PF09976 TPR_21: Tetratricopep 99.0 5.9E-08 1.3E-12 79.8 16.2 122 196-318 23-145 (145)
121 TIGR02795 tol_pal_ybgF tol-pal 99.0 3.3E-08 7.1E-13 77.8 14.1 108 185-292 3-111 (119)
122 PF13525 YfiO: Outer membrane 98.9 2E-07 4.3E-12 81.2 19.4 158 187-345 8-195 (203)
123 KOG0553|consensus 98.9 2E-08 4.4E-13 89.3 12.8 124 191-319 88-214 (304)
124 cd00189 TPR Tetratricopeptide 98.9 2.7E-08 5.8E-13 73.5 11.6 96 188-288 4-99 (100)
125 PF13525 YfiO: Outer membrane 98.9 2.7E-07 5.9E-12 80.4 19.6 176 112-311 5-198 (203)
126 KOG0128|consensus 98.9 8.3E-07 1.8E-11 88.4 24.2 109 243-356 300-410 (881)
127 PRK10866 outer membrane biogen 98.9 6.9E-07 1.5E-11 79.9 22.0 165 154-318 35-239 (243)
128 KOG0128|consensus 98.9 1.5E-07 3.1E-12 93.6 18.6 249 99-358 299-564 (881)
129 PRK15363 pathogenicity island 98.9 9.5E-08 2.1E-12 78.1 14.4 98 185-287 36-133 (157)
130 PRK04841 transcriptional regul 98.9 2.2E-06 4.7E-11 91.3 29.1 243 118-360 458-763 (903)
131 PRK15363 pathogenicity island 98.9 5.1E-08 1.1E-12 79.7 12.2 100 218-319 32-131 (157)
132 TIGR02795 tol_pal_ybgF tol-pal 98.8 1.3E-07 2.9E-12 74.3 13.7 100 221-320 2-105 (119)
133 KOG0550|consensus 98.8 4.8E-07 1E-11 83.6 18.5 159 92-253 183-353 (486)
134 COG4235 Cytochrome c biogenesi 98.8 2.2E-07 4.8E-12 83.1 15.7 119 167-290 138-260 (287)
135 cd00189 TPR Tetratricopeptide 98.8 1.3E-07 2.9E-12 69.7 11.8 97 153-252 2-99 (100)
136 PLN03088 SGT1, suppressor of 98.8 1.9E-07 4.2E-12 88.4 15.3 107 116-230 6-113 (356)
137 PRK10866 outer membrane biogen 98.8 3.8E-06 8.3E-11 75.2 22.4 166 183-352 31-236 (243)
138 PF12895 Apc3: Anaphase-promot 98.8 2.2E-08 4.8E-13 74.2 6.8 81 235-316 3-83 (84)
139 PF13414 TPR_11: TPR repeat; P 98.8 6.1E-08 1.3E-12 68.8 8.5 67 220-288 2-69 (69)
140 KOG3785|consensus 98.8 4.4E-06 9.5E-11 76.0 22.1 160 85-254 29-218 (557)
141 PF08424 NRDE-2: NRDE-2, neces 98.7 8.8E-07 1.9E-11 82.7 18.4 147 99-250 6-183 (321)
142 PRK02603 photosystem I assembl 98.7 1.1E-06 2.4E-11 74.5 17.4 82 154-238 38-123 (172)
143 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 4.6E-07 9.9E-12 86.0 15.8 121 154-281 172-292 (395)
144 PF14938 SNAP: Soluble NSF att 98.7 9.2E-07 2E-11 81.2 17.5 206 113-319 36-265 (282)
145 PF09976 TPR_21: Tetratricopep 98.7 6E-07 1.3E-11 73.8 14.3 118 125-248 24-145 (145)
146 KOG0553|consensus 98.7 2.3E-07 4.9E-12 82.7 12.2 107 161-272 91-198 (304)
147 PRK10803 tol-pal system protei 98.7 5.2E-07 1.1E-11 81.4 14.7 105 185-292 143-252 (263)
148 COG4700 Uncharacterized protei 98.7 2.3E-06 4.9E-11 71.3 16.8 142 174-319 79-225 (251)
149 KOG2376|consensus 98.7 3.1E-05 6.6E-10 74.9 26.8 247 107-362 105-451 (652)
150 KOG2053|consensus 98.7 2.5E-05 5.3E-10 78.8 27.1 129 81-214 12-140 (932)
151 PRK02603 photosystem I assembl 98.7 5.8E-07 1.2E-11 76.2 13.7 90 186-277 37-126 (172)
152 PF04733 Coatomer_E: Coatomer 98.7 5.3E-07 1.2E-11 82.7 14.3 79 237-317 183-262 (290)
153 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 1.4E-06 3E-11 82.8 17.0 120 188-315 173-292 (395)
154 COG0457 NrfG FOG: TPR repeat [ 98.7 5E-05 1.1E-09 64.9 25.8 216 96-320 41-265 (291)
155 COG0457 NrfG FOG: TPR repeat [ 98.7 0.00018 4E-09 61.4 29.2 225 125-358 36-266 (291)
156 PRK10153 DNA-binding transcrip 98.7 4E-06 8.6E-11 83.0 20.7 159 99-291 324-487 (517)
157 PF13414 TPR_11: TPR repeat; P 98.7 1.6E-07 3.5E-12 66.6 8.1 67 183-252 2-69 (69)
158 PF14938 SNAP: Soluble NSF att 98.6 1.4E-06 3.1E-11 79.9 16.4 184 160-345 44-251 (282)
159 PF13432 TPR_16: Tetratricopep 98.6 2.5E-07 5.3E-12 64.8 8.6 53 266-318 6-58 (65)
160 PF13432 TPR_16: Tetratricopep 98.6 8.9E-08 1.9E-12 67.1 6.3 62 227-290 3-64 (65)
161 COG4235 Cytochrome c biogenesi 98.6 1.2E-06 2.7E-11 78.4 14.9 120 200-325 138-260 (287)
162 KOG2396|consensus 98.6 1.4E-06 3E-11 82.5 15.8 99 200-303 87-186 (568)
163 PF08424 NRDE-2: NRDE-2, neces 98.6 2.1E-06 4.6E-11 80.1 17.2 147 206-358 7-184 (321)
164 CHL00033 ycf3 photosystem I as 98.6 9.2E-07 2E-11 74.6 13.1 97 220-316 34-138 (168)
165 PF13512 TPR_18: Tetratricopep 98.6 2E-06 4.3E-11 69.2 13.8 109 184-292 10-134 (142)
166 PF12688 TPR_5: Tetratrico pep 98.6 1.7E-06 3.6E-11 68.3 13.1 98 222-319 2-103 (120)
167 PF12895 Apc3: Anaphase-promot 98.6 2.4E-07 5.3E-12 68.5 7.9 81 197-283 2-84 (84)
168 PF04733 Coatomer_E: Coatomer 98.6 2.4E-06 5.2E-11 78.4 16.1 163 114-291 104-270 (290)
169 PRK10153 DNA-binding transcrip 98.6 5.7E-06 1.2E-10 81.9 19.8 159 183-352 336-509 (517)
170 PRK10803 tol-pal system protei 98.6 2.3E-06 5.1E-11 77.2 15.2 100 220-319 141-245 (263)
171 CHL00033 ycf3 photosystem I as 98.6 2.5E-06 5.4E-11 71.9 14.5 123 236-361 14-146 (168)
172 PRK04841 transcriptional regul 98.6 6.7E-05 1.4E-09 80.0 28.5 207 113-319 410-640 (903)
173 PRK11906 transcriptional regul 98.5 4.7E-06 1E-10 79.2 15.9 147 200-351 274-430 (458)
174 PRK11906 transcriptional regul 98.5 1.5E-05 3.3E-10 75.7 19.2 125 127-257 273-408 (458)
175 COG1729 Uncharacterized protei 98.5 3.5E-06 7.5E-11 74.7 13.1 104 191-294 148-252 (262)
176 PF14559 TPR_19: Tetratricopep 98.5 5.1E-07 1.1E-11 63.7 6.4 35 218-252 22-56 (68)
177 KOG0543|consensus 98.4 3.4E-06 7.3E-11 78.3 12.8 129 189-319 213-354 (397)
178 KOG0543|consensus 98.4 6.3E-06 1.4E-10 76.5 13.3 125 159-288 216-357 (397)
179 COG4105 ComL DNA uptake lipopr 98.4 0.00014 3.1E-09 64.0 21.1 184 111-319 33-231 (254)
180 KOG2376|consensus 98.4 0.00032 6.9E-09 68.1 24.8 255 102-360 164-490 (652)
181 PF14559 TPR_19: Tetratricopep 98.4 1.5E-06 3.2E-11 61.4 6.9 67 231-299 1-67 (68)
182 PRK15331 chaperone protein Sic 98.4 2.7E-05 5.9E-10 64.1 15.2 99 187-291 40-138 (165)
183 COG4105 ComL DNA uptake lipopr 98.4 0.00015 3.1E-09 64.0 20.2 167 183-350 33-226 (254)
184 PF12688 TPR_5: Tetratrico pep 98.3 1.1E-05 2.3E-10 63.8 11.8 98 186-285 3-103 (120)
185 PF13371 TPR_9: Tetratricopept 98.3 3.1E-06 6.6E-11 60.6 8.0 62 192-256 3-64 (73)
186 KOG3785|consensus 98.3 0.00013 2.8E-09 66.7 19.4 175 122-302 32-230 (557)
187 COG3898 Uncharacterized membra 98.3 0.0028 6E-08 58.9 28.1 257 82-356 124-391 (531)
188 PF13371 TPR_9: Tetratricopept 98.3 5E-06 1.1E-10 59.5 8.2 66 229-296 3-68 (73)
189 KOG3617|consensus 98.1 0.00079 1.7E-08 67.7 22.4 174 185-358 859-1110(1416)
190 KOG1585|consensus 98.1 0.0017 3.6E-08 56.7 20.7 189 163-352 43-251 (308)
191 PRK15331 chaperone protein Sic 98.1 4.8E-05 1E-09 62.7 10.7 100 218-319 34-133 (165)
192 KOG3617|consensus 98.0 0.0009 2E-08 67.3 20.4 226 110-354 755-1048(1416)
193 COG4700 Uncharacterized protei 98.0 0.0025 5.3E-08 53.5 19.6 124 220-348 88-213 (251)
194 KOG1941|consensus 98.0 0.0013 2.8E-08 60.5 19.1 248 89-345 16-294 (518)
195 KOG1941|consensus 98.0 0.00065 1.4E-08 62.4 17.2 239 121-364 15-282 (518)
196 KOG4340|consensus 98.0 0.00023 5E-09 63.7 13.9 208 92-314 24-264 (459)
197 KOG4340|consensus 98.0 0.00049 1.1E-08 61.7 15.9 185 123-319 21-206 (459)
198 COG5191 Uncharacterized conser 97.9 1.2E-05 2.5E-10 72.1 4.9 94 204-302 93-187 (435)
199 PF13428 TPR_14: Tetratricopep 97.9 2.8E-05 6E-10 49.8 5.4 41 259-299 3-43 (44)
200 PF13512 TPR_18: Tetratricopep 97.9 0.00033 7.2E-09 56.5 12.8 71 111-183 9-79 (142)
201 KOG4234|consensus 97.9 0.00066 1.4E-08 57.5 14.8 64 188-254 138-201 (271)
202 COG1729 Uncharacterized protei 97.9 0.00023 5E-09 63.3 12.4 94 163-256 153-250 (262)
203 KOG2053|consensus 97.9 0.0089 1.9E-07 60.9 24.6 223 123-356 20-254 (932)
204 KOG3081|consensus 97.9 0.0027 5.8E-08 56.2 18.3 109 160-274 146-258 (299)
205 COG4785 NlpI Lipoprotein NlpI, 97.9 0.00089 1.9E-08 57.4 14.8 92 162-256 76-168 (297)
206 KOG4648|consensus 97.9 6.1E-05 1.3E-09 68.5 8.2 105 191-300 104-208 (536)
207 KOG3081|consensus 97.9 0.018 3.8E-07 51.1 23.4 149 153-312 109-262 (299)
208 COG3898 Uncharacterized membra 97.9 0.025 5.5E-07 52.8 28.8 264 77-355 80-356 (531)
209 PF13424 TPR_12: Tetratricopep 97.8 5.1E-05 1.1E-09 55.0 6.3 65 221-285 5-74 (78)
210 PLN03098 LPA1 LOW PSII ACCUMUL 97.8 0.00021 4.6E-09 68.0 11.7 64 184-250 75-141 (453)
211 KOG4234|consensus 97.8 0.00081 1.8E-08 56.9 13.8 99 191-291 102-202 (271)
212 KOG4555|consensus 97.8 0.00044 9.6E-09 54.4 11.1 88 230-319 52-143 (175)
213 PF13428 TPR_14: Tetratricopep 97.8 4.4E-05 9.6E-10 48.8 4.7 42 113-159 2-43 (44)
214 KOG2796|consensus 97.8 0.0029 6.2E-08 55.9 16.9 133 114-253 179-318 (366)
215 KOG1130|consensus 97.8 0.0024 5.3E-08 59.7 17.2 268 87-360 25-347 (639)
216 PLN03098 LPA1 LOW PSII ACCUMUL 97.8 0.00032 6.9E-09 66.8 11.7 69 107-180 70-141 (453)
217 KOG4555|consensus 97.8 0.001 2.2E-08 52.5 12.3 94 191-287 50-145 (175)
218 PF08311 Mad3_BUB1_I: Mad3/BUB 97.7 0.00087 1.9E-08 53.5 11.5 110 239-355 3-126 (126)
219 PF04184 ST7: ST7 protein; In 97.7 0.0055 1.2E-07 58.9 18.4 168 116-293 172-382 (539)
220 KOG2796|consensus 97.7 0.011 2.4E-07 52.3 18.8 131 188-320 181-315 (366)
221 PF13281 DUF4071: Domain of un 97.6 0.019 4.2E-07 54.1 21.4 176 111-291 140-339 (374)
222 PF10300 DUF3808: Protein of u 97.6 0.0071 1.5E-07 59.5 19.3 176 133-319 178-375 (468)
223 KOG1130|consensus 97.6 0.00034 7.3E-09 65.2 9.1 236 120-361 25-301 (639)
224 PF13424 TPR_12: Tetratricopep 97.6 0.00019 4.1E-09 52.0 6.1 63 257-319 5-74 (78)
225 PF04184 ST7: ST7 protein; In 97.6 0.01 2.3E-07 57.0 19.0 177 164-357 181-375 (539)
226 PF13431 TPR_17: Tetratricopep 97.6 6.2E-05 1.3E-09 45.2 2.8 33 100-132 1-33 (34)
227 COG4785 NlpI Lipoprotein NlpI, 97.5 0.011 2.5E-07 50.8 16.6 223 80-339 45-281 (297)
228 PF08311 Mad3_BUB1_I: Mad3/BUB 97.5 0.0025 5.4E-08 50.9 12.0 111 129-248 2-126 (126)
229 COG5191 Uncharacterized conser 97.5 0.00018 4E-09 64.6 5.8 97 93-194 87-186 (435)
230 PF03704 BTAD: Bacterial trans 97.5 0.0042 9.1E-08 50.8 13.6 63 257-319 62-124 (146)
231 COG3118 Thioredoxin domain-con 97.5 0.012 2.5E-07 53.1 17.0 150 88-246 143-297 (304)
232 KOG1464|consensus 97.5 0.012 2.5E-07 52.4 16.5 210 93-305 41-286 (440)
233 PF13431 TPR_17: Tetratricopep 97.4 0.00018 3.9E-09 43.1 3.3 33 279-311 1-33 (34)
234 PF08631 SPO22: Meiosis protei 97.4 0.1 2.2E-06 47.8 26.6 227 123-355 4-273 (278)
235 PF06552 TOM20_plant: Plant sp 97.4 0.0019 4E-08 54.0 10.0 93 200-297 7-120 (186)
236 PF06552 TOM20_plant: Plant sp 97.4 0.0013 2.9E-08 54.9 8.7 92 97-193 10-122 (186)
237 KOG1586|consensus 97.3 0.11 2.4E-06 45.3 19.7 121 199-319 88-223 (288)
238 KOG0985|consensus 97.2 0.058 1.3E-06 56.0 20.4 143 151-317 1104-1246(1666)
239 PF04910 Tcf25: Transcriptiona 97.2 0.012 2.6E-07 55.8 15.1 173 92-290 23-226 (360)
240 PF02259 FAT: FAT domain; Int 97.2 0.066 1.4E-06 50.3 20.2 122 183-304 145-305 (352)
241 smart00386 HAT HAT (Half-A-TPR 97.2 0.00078 1.7E-08 39.5 4.4 32 271-302 1-32 (33)
242 KOG1464|consensus 97.2 0.015 3.2E-07 51.7 13.8 162 123-286 38-220 (440)
243 PF10300 DUF3808: Protein of u 97.1 0.051 1.1E-06 53.5 18.5 159 124-287 200-377 (468)
244 KOG3616|consensus 97.1 0.061 1.3E-06 54.1 18.0 153 186-351 663-847 (1636)
245 PF03704 BTAD: Bacterial trans 97.0 0.025 5.3E-07 46.2 13.3 61 186-249 64-124 (146)
246 PF07719 TPR_2: Tetratricopept 97.0 0.0018 3.9E-08 38.3 4.6 30 223-252 3-32 (34)
247 COG3118 Thioredoxin domain-con 97.0 0.074 1.6E-06 48.1 16.4 149 164-318 147-299 (304)
248 KOG4642|consensus 97.0 0.0094 2E-07 52.0 10.3 111 197-312 23-138 (284)
249 COG1747 Uncharacterized N-term 97.0 0.42 9.1E-06 46.4 23.0 217 109-340 63-285 (711)
250 KOG1586|consensus 96.9 0.11 2.4E-06 45.3 16.6 128 165-292 87-230 (288)
251 KOG2610|consensus 96.9 0.038 8.3E-07 50.6 14.3 152 92-248 117-274 (491)
252 KOG2471|consensus 96.9 0.25 5.4E-06 47.6 20.2 124 107-233 235-381 (696)
253 KOG4648|consensus 96.9 0.0058 1.3E-07 55.9 9.1 89 162-253 108-197 (536)
254 PF00515 TPR_1: Tetratricopept 96.9 0.0021 4.6E-08 38.2 4.3 32 222-253 2-33 (34)
255 KOG4642|consensus 96.8 0.026 5.7E-07 49.3 11.5 82 166-250 25-107 (284)
256 PF07719 TPR_2: Tetratricopept 96.8 0.0047 1E-07 36.5 5.1 32 259-290 3-34 (34)
257 KOG2610|consensus 96.7 0.23 5E-06 45.7 17.7 172 163-337 115-292 (491)
258 PF13281 DUF4071: Domain of un 96.7 0.52 1.1E-05 44.7 20.8 165 151-320 141-334 (374)
259 KOG3616|consensus 96.7 0.54 1.2E-05 47.6 21.0 142 188-356 769-910 (1636)
260 PF00515 TPR_1: Tetratricopept 96.6 0.0056 1.2E-07 36.3 4.6 32 258-289 2-33 (34)
261 smart00386 HAT HAT (Half-A-TPR 96.6 0.004 8.8E-08 36.3 3.9 32 126-162 1-32 (33)
262 smart00777 Mad3_BUB1_I Mad3/BU 96.6 0.049 1.1E-06 43.1 11.0 105 242-353 6-124 (125)
263 PF08631 SPO22: Meiosis protei 96.6 0.36 7.7E-06 44.1 18.4 161 162-325 4-191 (278)
264 KOG2471|consensus 96.5 0.02 4.3E-07 54.9 9.8 118 185-302 241-380 (696)
265 PF13174 TPR_6: Tetratricopept 96.4 0.0071 1.5E-07 35.4 4.2 32 259-290 2-33 (33)
266 KOG2041|consensus 96.4 0.61 1.3E-05 47.0 19.4 84 221-318 796-879 (1189)
267 KOG1308|consensus 96.4 0.012 2.6E-07 53.9 7.3 126 83-213 119-244 (377)
268 PF04910 Tcf25: Transcriptiona 96.4 0.42 9.1E-06 45.4 18.1 167 179-361 34-226 (360)
269 KOG0985|consensus 96.4 1.1 2.3E-05 47.2 21.5 182 109-319 1101-1307(1666)
270 KOG0545|consensus 96.3 0.14 3.1E-06 45.0 13.1 99 222-320 179-293 (329)
271 smart00777 Mad3_BUB1_I Mad3/BU 96.3 0.12 2.6E-06 41.0 11.7 41 241-281 83-123 (125)
272 KOG0530|consensus 96.2 0.88 1.9E-05 40.6 19.2 200 128-338 59-269 (318)
273 KOG1585|consensus 96.2 0.84 1.8E-05 40.3 18.4 194 115-314 34-250 (308)
274 COG2976 Uncharacterized protei 96.2 0.16 3.5E-06 43.2 12.3 95 223-319 91-187 (207)
275 PF10602 RPN7: 26S proteasome 96.2 0.059 1.3E-06 45.7 10.0 101 186-288 38-144 (177)
276 KOG0890|consensus 96.1 3.1 6.8E-05 47.6 25.1 245 111-360 1628-1923(2382)
277 PF02184 HAT: HAT (Half-A-TPR) 96.1 0.01 2.2E-07 34.6 3.4 30 127-162 2-31 (32)
278 PF02184 HAT: HAT (Half-A-TPR) 96.0 0.013 2.8E-07 34.1 3.7 28 307-338 3-30 (32)
279 KOG0545|consensus 96.0 0.21 4.6E-06 43.9 12.8 92 159-253 186-296 (329)
280 KOG0376|consensus 96.0 0.011 2.4E-07 56.5 5.3 102 195-301 15-116 (476)
281 PF02259 FAT: FAT domain; Int 95.9 1.5 3.3E-05 41.0 25.0 121 218-341 143-305 (352)
282 PF10602 RPN7: 26S proteasome 95.8 0.34 7.4E-06 41.1 13.1 100 113-214 37-143 (177)
283 PF13041 PPR_2: PPR repeat fam 95.8 0.042 9E-07 35.8 6.0 48 182-231 1-48 (50)
284 COG2976 Uncharacterized protei 95.6 0.21 4.7E-06 42.4 11.0 94 188-288 93-190 (207)
285 PF13181 TPR_8: Tetratricopept 95.6 0.022 4.7E-07 33.6 3.8 26 224-249 4-29 (34)
286 PF13181 TPR_8: Tetratricopept 95.5 0.031 6.8E-07 32.9 4.2 30 259-288 3-32 (34)
287 PF10345 Cohesin_load: Cohesin 95.5 3.4 7.3E-05 42.3 21.5 182 129-315 38-249 (608)
288 PF13174 TPR_6: Tetratricopept 95.5 0.034 7.3E-07 32.4 4.3 28 187-214 3-30 (33)
289 PF11207 DUF2989: Protein of u 95.4 1.5 3.3E-05 37.6 15.8 88 182-277 109-198 (203)
290 KOG0551|consensus 95.4 0.1 2.2E-06 47.8 8.6 93 191-285 88-181 (390)
291 KOG2422|consensus 95.3 0.51 1.1E-05 46.4 13.6 147 107-253 279-451 (665)
292 KOG2422|consensus 95.2 1.1 2.3E-05 44.3 15.4 164 196-361 250-452 (665)
293 PF09613 HrpB1_HrpK: Bacterial 95.2 1.5 3.3E-05 36.2 14.4 75 194-273 20-94 (160)
294 PF13176 TPR_7: Tetratricopept 95.1 0.054 1.2E-06 32.6 4.3 25 187-211 2-26 (36)
295 KOG3824|consensus 95.0 0.2 4.4E-06 45.5 9.4 63 232-296 127-189 (472)
296 KOG0376|consensus 94.9 0.042 9.1E-07 52.7 5.0 89 165-256 18-107 (476)
297 PF13176 TPR_7: Tetratricopept 94.9 0.056 1.2E-06 32.6 3.9 27 114-140 1-27 (36)
298 PF12854 PPR_1: PPR repeat 94.7 0.066 1.4E-06 31.9 3.9 30 181-210 4-33 (34)
299 KOG1308|consensus 94.6 0.032 7E-07 51.2 3.4 117 196-319 126-243 (377)
300 PF14561 TPR_20: Tetratricopep 94.6 0.37 8.1E-06 35.8 8.5 76 98-176 8-83 (90)
301 KOG1538|consensus 94.4 0.97 2.1E-05 45.2 13.1 110 191-317 710-830 (1081)
302 PRK10941 hypothetical protein; 94.3 0.72 1.6E-05 41.8 11.4 65 193-260 190-254 (269)
303 PF04053 Coatomer_WDAD: Coatom 94.1 3.7 8.1E-05 40.1 16.6 53 259-319 349-401 (443)
304 KOG0551|consensus 94.1 0.28 6E-06 45.1 8.1 96 222-317 82-179 (390)
305 KOG3824|consensus 94.0 0.17 3.6E-06 46.0 6.6 60 193-255 125-184 (472)
306 smart00028 TPR Tetratricopepti 93.9 0.11 2.3E-06 29.0 3.6 27 224-250 4-30 (34)
307 PF07079 DUF1347: Protein of u 93.8 1.8 3.8E-05 41.7 13.2 124 191-319 13-156 (549)
308 KOG1538|consensus 93.8 5.3 0.00011 40.3 16.7 53 296-354 778-830 (1081)
309 KOG4507|consensus 93.7 0.47 1E-05 46.8 9.4 62 189-253 647-708 (886)
310 PF09986 DUF2225: Uncharacteri 93.4 1.4 3.1E-05 38.5 11.3 66 186-251 120-195 (214)
311 KOG0890|consensus 93.4 12 0.00026 43.3 20.4 184 149-337 1627-1852(2382)
312 COG1747 Uncharacterized N-term 93.3 8.8 0.00019 37.7 20.9 160 154-320 69-234 (711)
313 KOG2041|consensus 93.1 10 0.00022 38.7 17.5 237 106-360 687-976 (1189)
314 PF14561 TPR_20: Tetratricopep 93.1 1.6 3.5E-05 32.4 9.7 44 207-253 11-54 (90)
315 KOG3807|consensus 93.1 7.4 0.00016 36.1 18.0 181 93-295 198-400 (556)
316 COG2909 MalT ATP-dependent tra 93.1 13 0.00028 38.9 21.6 269 81-353 382-684 (894)
317 smart00028 TPR Tetratricopepti 93.1 0.17 3.8E-06 28.1 3.7 31 259-289 3-33 (34)
318 COG3629 DnrI DNA-binding trans 93.1 1.3 2.7E-05 40.3 10.6 81 257-337 153-236 (280)
319 KOG0530|consensus 93.0 4.5 9.8E-05 36.2 13.5 184 151-342 42-236 (318)
320 PF04053 Coatomer_WDAD: Coatom 92.9 6.2 0.00013 38.6 16.0 155 123-317 272-428 (443)
321 KOG1550|consensus 92.9 12 0.00026 37.9 19.1 112 166-287 264-394 (552)
322 PRK10941 hypothetical protein; 92.7 1.9 4.1E-05 39.1 11.4 74 261-335 185-258 (269)
323 PF10345 Cohesin_load: Cohesin 92.7 13 0.00029 38.0 22.8 195 168-364 38-261 (608)
324 PF09986 DUF2225: Uncharacteri 92.6 1.1 2.3E-05 39.3 9.4 87 128-214 93-195 (214)
325 PF09613 HrpB1_HrpK: Bacterial 92.4 5.6 0.00012 32.9 14.0 94 223-319 12-105 (160)
326 PF11207 DUF2989: Protein of u 92.4 6.6 0.00014 33.8 13.8 77 122-203 116-197 (203)
327 PF14853 Fis1_TPR_C: Fis1 C-te 92.2 1.1 2.3E-05 29.7 6.8 33 262-294 6-38 (53)
328 PF14853 Fis1_TPR_C: Fis1 C-te 92.0 0.71 1.5E-05 30.6 5.7 39 223-261 3-41 (53)
329 KOG2300|consensus 91.8 14 0.00029 36.2 19.5 190 116-306 327-540 (629)
330 KOG4507|consensus 91.8 2.8 6E-05 41.7 11.7 101 218-318 210-310 (886)
331 KOG0687|consensus 91.6 6.5 0.00014 36.3 13.1 98 112-214 104-211 (393)
332 PF07079 DUF1347: Protein of u 91.4 8.7 0.00019 37.2 14.3 121 162-286 17-157 (549)
333 KOG3364|consensus 91.0 4.8 0.0001 32.3 10.3 80 181-262 29-112 (149)
334 KOG1920|consensus 90.9 21 0.00046 38.6 17.7 27 221-247 939-965 (1265)
335 PF12854 PPR_1: PPR repeat 90.7 0.61 1.3E-05 27.6 4.1 30 218-247 4-33 (34)
336 KOG1550|consensus 90.7 20 0.00044 36.2 19.4 241 96-356 267-537 (552)
337 PF01535 PPR: PPR repeat; Int 90.6 0.35 7.7E-06 27.3 3.0 28 186-213 2-29 (31)
338 KOG2300|consensus 90.2 20 0.00042 35.2 24.6 225 123-352 286-551 (629)
339 PF13374 TPR_10: Tetratricopep 90.2 0.67 1.4E-05 28.2 4.2 27 223-249 4-30 (42)
340 TIGR02561 HrpB1_HrpK type III 90.0 9.4 0.0002 31.2 14.1 99 196-318 22-120 (153)
341 COG5187 RPN7 26S proteasome re 89.9 11 0.00024 34.4 12.8 145 107-253 68-224 (412)
342 COG4976 Predicted methyltransf 89.9 0.7 1.5E-05 40.4 5.3 59 230-290 4-62 (287)
343 PRK13184 pknD serine/threonine 89.9 32 0.00068 37.0 22.6 102 119-223 482-588 (932)
344 PF13041 PPR_2: PPR repeat fam 89.8 1.5 3.3E-05 28.2 5.8 43 152-194 4-48 (50)
345 COG3629 DnrI DNA-binding trans 89.3 2.1 4.6E-05 38.9 8.2 63 221-285 153-215 (280)
346 COG4976 Predicted methyltransf 89.3 0.54 1.2E-05 41.1 4.1 58 194-254 5-62 (287)
347 TIGR02561 HrpB1_HrpK type III 89.3 7 0.00015 31.9 10.2 82 224-307 13-94 (153)
348 TIGR00756 PPR pentatricopeptid 89.1 1 2.3E-05 25.9 4.3 32 293-324 2-33 (35)
349 PF12862 Apc5: Anaphase-promot 88.9 3 6.4E-05 31.1 7.6 55 196-250 10-70 (94)
350 PRK15180 Vi polysaccharide bio 88.9 9.3 0.0002 37.2 12.3 129 165-298 303-432 (831)
351 KOG3364|consensus 88.9 6 0.00013 31.8 9.3 75 219-294 30-108 (149)
352 PF13812 PPR_3: Pentatricopept 88.8 1.1 2.4E-05 25.8 4.3 30 293-322 3-32 (34)
353 smart00299 CLH Clathrin heavy 88.6 9.6 0.00021 30.4 11.1 27 96-122 25-51 (140)
354 PF13374 TPR_10: Tetratricopep 88.0 1.5 3.2E-05 26.6 4.6 27 259-285 4-30 (42)
355 PF12968 DUF3856: Domain of Un 87.3 13 0.00027 29.3 12.7 93 120-212 17-128 (144)
356 TIGR00756 PPR pentatricopeptid 86.9 1.4 3E-05 25.4 3.8 28 186-213 2-29 (35)
357 PF09670 Cas_Cas02710: CRISPR- 86.8 20 0.00043 34.3 13.6 57 191-250 138-198 (379)
358 PF12862 Apc5: Anaphase-promot 86.8 4.8 0.0001 30.0 7.6 58 123-180 9-70 (94)
359 COG0790 FOG: TPR repeat, SEL1 86.6 25 0.00054 31.9 20.3 141 166-319 92-265 (292)
360 KOG2114|consensus 86.1 46 0.001 34.8 16.0 30 113-142 369-398 (933)
361 PF01535 PPR: PPR repeat; Int 85.9 1.4 3E-05 24.7 3.4 27 293-319 2-28 (31)
362 TIGR02996 rpt_mate_G_obs repea 85.8 2.1 4.7E-05 26.6 4.2 32 279-310 4-35 (42)
363 COG3947 Response regulator con 85.5 3.5 7.5E-05 37.5 7.1 60 259-318 281-340 (361)
364 PRK15180 Vi polysaccharide bio 85.5 4.5 9.7E-05 39.3 8.2 121 195-320 300-420 (831)
365 PF07721 TPR_4: Tetratricopept 84.7 1.3 2.9E-05 24.3 2.7 20 225-244 5-24 (26)
366 COG4941 Predicted RNA polymera 84.4 35 0.00076 31.9 13.0 128 151-292 264-400 (415)
367 PF04781 DUF627: Protein of un 84.2 14 0.00029 28.6 8.9 44 276-319 63-106 (111)
368 KOG4422|consensus 84.1 42 0.00092 32.5 24.5 245 87-350 91-378 (625)
369 COG4941 Predicted RNA polymera 83.7 29 0.00062 32.4 12.2 118 198-320 270-394 (415)
370 PF13812 PPR_3: Pentatricopept 83.2 3.2 7E-05 23.8 4.3 28 186-213 3-30 (34)
371 COG2909 MalT ATP-dependent tra 82.5 70 0.0015 33.8 26.4 193 161-356 425-646 (894)
372 PF04840 Vps16_C: Vps16, C-ter 82.2 27 0.00058 32.6 11.9 108 195-317 188-301 (319)
373 KOG3783|consensus 81.8 58 0.0013 32.4 18.3 77 106-185 261-337 (546)
374 PF12739 TRAPPC-Trs85: ER-Golg 81.4 54 0.0012 31.8 14.7 27 293-319 371-398 (414)
375 PRK12798 chemotaxis protein; R 81.3 53 0.0012 31.6 22.6 191 162-358 92-287 (421)
376 COG3947 Response regulator con 81.2 7.1 0.00015 35.6 7.2 62 152-213 280-342 (361)
377 COG2912 Uncharacterized conser 80.7 14 0.00031 33.3 9.1 61 193-256 190-250 (269)
378 KOG3807|consensus 79.8 53 0.0012 30.7 14.0 119 115-253 187-307 (556)
379 PF07721 TPR_4: Tetratricopept 79.6 2.8 6.1E-05 22.9 2.8 18 263-280 7-24 (26)
380 PRK12798 chemotaxis protein; R 79.1 63 0.0014 31.1 22.5 219 101-324 100-328 (421)
381 PF11817 Foie-gras_1: Foie gra 78.9 18 0.00038 32.4 9.3 77 237-313 154-240 (247)
382 KOG2581|consensus 78.5 43 0.00092 32.1 11.7 133 220-358 125-270 (493)
383 PF11846 DUF3366: Domain of un 78.3 9.4 0.0002 32.6 7.1 44 171-214 131-174 (193)
384 PF04781 DUF627: Protein of un 78.0 30 0.00065 26.8 9.8 91 192-284 4-105 (111)
385 PF14929 TAF1_subA: TAF RNA Po 77.8 82 0.0018 31.8 15.1 110 198-317 323-438 (547)
386 KOG4318|consensus 77.6 1E+02 0.0022 32.8 15.0 114 156-271 712-828 (1088)
387 KOG0686|consensus 77.4 62 0.0013 31.1 12.4 102 186-292 152-261 (466)
388 COG5187 RPN7 26S proteasome re 77.2 60 0.0013 29.8 14.5 99 111-214 114-222 (412)
389 COG3914 Spy Predicted O-linked 77.2 85 0.0019 31.6 13.9 30 264-293 149-178 (620)
390 PF15297 CKAP2_C: Cytoskeleton 76.9 12 0.00025 35.0 7.5 63 130-194 121-185 (353)
391 PF04840 Vps16_C: Vps16, C-ter 76.2 68 0.0015 29.9 19.8 80 228-317 184-263 (319)
392 TIGR02996 rpt_mate_G_obs repea 76.0 6.6 0.00014 24.5 3.9 33 99-131 3-35 (42)
393 PRK13184 pknD serine/threonine 75.9 21 0.00045 38.3 10.1 100 191-293 482-588 (932)
394 KOG0276|consensus 75.9 42 0.0009 33.9 11.3 67 97-177 626-692 (794)
395 TIGR03504 FimV_Cterm FimV C-te 74.7 6.3 0.00014 24.9 3.7 24 189-212 4-27 (44)
396 PF10579 Rapsyn_N: Rapsyn N-te 74.2 14 0.0003 26.6 5.7 35 267-301 16-50 (80)
397 PRK11619 lytic murein transgly 74.2 1.1E+02 0.0025 31.6 22.1 189 122-317 251-465 (644)
398 KOG0686|consensus 74.1 17 0.00037 34.7 7.9 60 154-213 153-216 (466)
399 PF09797 NatB_MDM20: N-acetylt 74.0 47 0.001 31.5 11.4 46 127-177 198-243 (365)
400 TIGR03504 FimV_Cterm FimV C-te 73.9 7.5 0.00016 24.6 3.9 25 225-249 3-27 (44)
401 PF10255 Paf67: RNA polymerase 73.6 90 0.002 30.2 14.9 168 113-284 76-268 (404)
402 PF15297 CKAP2_C: Cytoskeleton 73.4 18 0.00039 33.8 7.8 53 200-252 119-171 (353)
403 PF12968 DUF3856: Domain of Un 72.9 45 0.00097 26.3 11.8 20 264-283 107-126 (144)
404 KOG1839|consensus 72.5 70 0.0015 35.2 12.9 133 117-250 937-1086(1236)
405 PF11846 DUF3366: Domain of un 71.5 22 0.00047 30.3 7.7 47 239-288 129-175 (193)
406 KOG1310|consensus 71.3 22 0.00047 35.3 8.1 89 199-292 389-480 (758)
407 PF10255 Paf67: RNA polymerase 71.0 61 0.0013 31.3 11.1 101 189-290 127-232 (404)
408 PF11817 Foie-gras_1: Foie gra 70.8 46 0.001 29.7 9.9 85 199-283 153-244 (247)
409 KOG0687|consensus 70.5 94 0.002 29.0 12.5 101 185-288 105-212 (393)
410 PF09797 NatB_MDM20: N-acetylt 69.3 1E+02 0.0023 29.1 21.3 46 272-317 198-243 (365)
411 KOG1920|consensus 69.3 1.4E+02 0.003 32.8 13.9 26 186-211 941-966 (1265)
412 PF09670 Cas_Cas02710: CRISPR- 69.1 1.1E+02 0.0024 29.3 12.9 60 118-180 137-198 (379)
413 PF07720 TPR_3: Tetratricopept 68.6 18 0.00038 21.7 4.5 20 224-243 4-23 (36)
414 COG0790 FOG: TPR repeat, SEL1 68.2 93 0.002 28.1 20.1 148 164-320 54-220 (292)
415 COG2912 Uncharacterized conser 67.9 34 0.00073 31.0 8.1 52 268-319 192-243 (269)
416 COG4455 ImpE Protein of avirul 65.2 51 0.0011 29.0 8.3 52 163-214 13-65 (273)
417 PF04090 RNA_pol_I_TF: RNA pol 65.1 91 0.002 26.9 12.2 64 151-214 41-106 (199)
418 PF07720 TPR_3: Tetratricopept 65.0 27 0.0006 20.9 5.0 29 260-288 4-34 (36)
419 COG4455 ImpE Protein of avirul 65.0 57 0.0012 28.7 8.5 121 228-358 8-135 (273)
420 KOG4814|consensus 65.0 1.2E+02 0.0026 31.0 11.8 96 152-251 356-458 (872)
421 PF10037 MRP-S27: Mitochondria 64.9 1.4E+02 0.0031 29.1 13.3 95 118-214 72-168 (429)
422 KOG2114|consensus 64.5 2E+02 0.0043 30.5 18.6 109 123-243 345-453 (933)
423 PRK15338 type III secretion sy 63.5 1.4E+02 0.003 28.4 16.2 24 172-195 110-134 (372)
424 PF10516 SHNi-TPR: SHNi-TPR; 63.4 14 0.0003 22.5 3.4 29 113-141 2-30 (38)
425 KOG1839|consensus 63.3 1.8E+02 0.004 32.2 13.7 100 186-285 975-1085(1236)
426 COG4649 Uncharacterized protei 63.0 95 0.0021 26.4 14.6 122 195-319 69-195 (221)
427 PF09205 DUF1955: Domain of un 62.7 81 0.0018 25.5 14.9 56 191-249 93-148 (161)
428 COG5159 RPN6 26S proteasome re 62.4 1.3E+02 0.0028 27.7 13.7 99 188-288 129-237 (421)
429 PF13226 DUF4034: Domain of un 62.3 1.3E+02 0.0027 27.5 11.8 43 273-315 115-157 (277)
430 PF10579 Rapsyn_N: Rapsyn N-te 61.5 59 0.0013 23.5 7.0 15 191-205 50-64 (80)
431 PHA02537 M terminase endonucle 61.3 47 0.001 29.4 7.7 19 342-360 192-210 (230)
432 smart00299 CLH Clathrin heavy 61.2 80 0.0017 24.9 14.1 34 197-233 20-53 (140)
433 KOG1310|consensus 60.6 45 0.00097 33.2 7.9 89 94-187 390-481 (758)
434 KOG1166|consensus 60.3 1.3E+02 0.0029 32.5 12.1 54 196-250 90-143 (974)
435 PF10516 SHNi-TPR: SHNi-TPR; 59.3 29 0.00063 21.1 4.3 28 186-213 3-30 (38)
436 PRK15490 Vi polysaccharide bio 59.1 68 0.0015 32.5 9.3 50 264-315 49-98 (578)
437 COG4649 Uncharacterized protei 58.0 1.2E+02 0.0025 25.8 14.4 130 165-300 72-209 (221)
438 PF14929 TAF1_subA: TAF RNA Po 57.9 2.2E+02 0.0047 28.8 17.8 130 165-304 323-468 (547)
439 PHA02537 M terminase endonucle 57.6 1.4E+02 0.003 26.5 10.7 40 251-290 163-211 (230)
440 KOG2280|consensus 56.6 2.6E+02 0.0055 29.3 12.8 98 194-312 694-791 (829)
441 PF10373 EST1_DNA_bind: Est1 D 56.4 34 0.00074 30.6 6.4 62 240-303 1-62 (278)
442 KOG0276|consensus 56.3 87 0.0019 31.7 9.2 86 108-210 662-747 (794)
443 PF15015 NYD-SP12_N: Spermatog 56.1 71 0.0015 30.9 8.3 84 191-276 183-281 (569)
444 PRK15338 type III secretion sy 56.0 1.9E+02 0.0041 27.6 22.0 44 79-123 91-134 (372)
445 KOG1463|consensus 55.9 1.8E+02 0.004 27.4 13.9 194 92-288 18-240 (411)
446 PF04190 DUF410: Protein of un 55.6 1.6E+02 0.0034 26.5 20.5 94 152-245 11-114 (260)
447 KOG1811|consensus 54.9 2E+02 0.0044 29.2 11.4 68 183-252 586-655 (1141)
448 PF12921 ATP13: Mitochondrial 53.1 1.1E+02 0.0024 24.1 11.8 54 181-235 49-102 (126)
449 KOG1166|consensus 52.9 1.1E+02 0.0025 33.1 10.1 122 220-343 33-164 (974)
450 KOG2758|consensus 52.4 2E+02 0.0044 26.9 13.2 63 256-318 128-194 (432)
451 PF12921 ATP13: Mitochondrial 52.4 1.2E+02 0.0025 24.0 9.0 46 254-299 49-96 (126)
452 cd02680 MIT_calpain7_2 MIT: do 50.7 41 0.00089 24.0 4.6 19 196-214 18-36 (75)
453 COG3914 Spy Predicted O-linked 49.3 3E+02 0.0065 27.9 13.0 112 203-319 50-170 (620)
454 KOG4279|consensus 48.9 3.5E+02 0.0075 28.5 17.3 217 108-340 195-438 (1226)
455 KOG3783|consensus 48.8 2.9E+02 0.0063 27.7 15.2 147 167-318 207-373 (546)
456 PF10373 EST1_DNA_bind: Est1 D 48.8 88 0.0019 27.9 7.9 43 98-140 2-44 (278)
457 PF15015 NYD-SP12_N: Spermatog 48.8 2.7E+02 0.0058 27.2 11.4 89 119-207 183-285 (569)
458 KOG4814|consensus 48.5 3.3E+02 0.0071 28.1 15.7 94 191-286 361-457 (872)
459 KOG0529|consensus 48.4 2.6E+02 0.0057 27.0 17.2 158 96-261 47-235 (421)
460 KOG4014|consensus 46.6 1.9E+02 0.0041 24.8 14.0 177 161-361 45-237 (248)
461 TIGR00985 3a0801s04tom mitocho 46.3 1.6E+02 0.0035 24.0 12.3 28 116-143 94-122 (148)
462 KOG2908|consensus 45.9 2.6E+02 0.0057 26.3 15.7 90 266-358 84-184 (380)
463 KOG2758|consensus 45.6 2.6E+02 0.0057 26.2 19.9 175 108-291 125-322 (432)
464 KOG1972|consensus 45.2 1.7E+02 0.0036 30.8 9.5 36 218-253 833-868 (913)
465 PF14863 Alkyl_sulf_dimr: Alky 44.8 1.1E+02 0.0024 24.8 6.8 45 261-305 74-118 (141)
466 PF04212 MIT: MIT (microtubule 44.3 83 0.0018 21.6 5.4 20 195-214 16-35 (69)
467 cd02684 MIT_2 MIT: domain cont 43.8 56 0.0012 23.2 4.5 19 196-214 18-36 (75)
468 cd02683 MIT_1 MIT: domain cont 43.6 78 0.0017 22.6 5.2 20 195-214 17-36 (77)
469 PF00244 14-3-3: 14-3-3 protei 43.1 2.4E+02 0.0052 25.0 15.1 28 116-143 5-32 (236)
470 PF02064 MAS20: MAS20 protein 42.6 61 0.0013 25.5 4.9 36 262-297 68-103 (121)
471 PF04190 DUF410: Protein of un 42.5 2.6E+02 0.0055 25.2 18.1 138 113-250 11-170 (260)
472 PF04097 Nic96: Nup93/Nic96; 41.9 4.1E+02 0.0088 27.3 12.6 186 117-314 116-350 (613)
473 PF00244 14-3-3: 14-3-3 protei 41.4 2.5E+02 0.0055 24.8 16.0 28 155-182 5-32 (236)
474 cd02680 MIT_calpain7_2 MIT: do 40.8 72 0.0016 22.8 4.6 19 301-319 16-34 (75)
475 COG4259 Uncharacterized protei 40.8 1.6E+02 0.0035 22.4 6.8 64 166-236 52-117 (121)
476 cd02684 MIT_2 MIT: domain cont 40.7 1.3E+02 0.0028 21.3 7.6 16 304-319 19-34 (75)
477 KOG2062|consensus 40.5 4.6E+02 0.01 27.6 16.9 223 96-337 446-688 (929)
478 PF02064 MAS20: MAS20 protein 40.4 1.6E+02 0.0034 23.2 6.9 28 116-143 67-94 (121)
479 PRK00218 putative lysogenizati 40.1 2.5E+02 0.0054 24.4 9.1 74 99-178 38-111 (207)
480 PF09205 DUF1955: Domain of un 39.8 2E+02 0.0044 23.3 13.2 30 194-226 12-41 (161)
481 PRK15490 Vi polysaccharide bio 39.4 1.4E+02 0.003 30.3 7.9 75 166-245 23-98 (578)
482 TIGR02710 CRISPR-associated pr 38.4 3.7E+02 0.008 25.8 13.4 21 193-213 139-159 (380)
483 KOG0529|consensus 37.6 3.9E+02 0.0084 25.9 18.9 101 199-302 90-194 (421)
484 KOG1114|consensus 36.8 5.9E+02 0.013 27.7 14.6 44 80-123 1076-1120(1304)
485 KOG4521|consensus 36.2 6.5E+02 0.014 28.1 18.2 183 117-319 925-1131(1480)
486 TIGR02568 LcrE type III secret 35.9 3.1E+02 0.0068 24.3 15.6 30 96-125 77-106 (240)
487 PF12583 TPPII_N: Tripeptidyl 35.6 1.5E+02 0.0033 23.7 6.0 32 272-303 91-122 (139)
488 KOG1497|consensus 35.4 3.8E+02 0.0083 25.1 15.3 62 186-247 105-170 (399)
489 cd02682 MIT_AAA_Arch MIT: doma 35.2 46 0.001 23.8 2.9 44 238-291 4-47 (75)
490 KOG2066|consensus 34.6 5.8E+02 0.013 27.0 19.9 31 218-248 502-532 (846)
491 cd02681 MIT_calpain7_1 MIT: do 34.6 89 0.0019 22.3 4.3 20 195-214 17-36 (76)
492 COG5159 RPN6 26S proteasome re 34.1 3.8E+02 0.0083 24.8 15.5 26 116-141 7-32 (421)
493 PF12753 Nro1: Nuclear pore co 33.7 49 0.0011 31.6 3.6 19 218-236 347-365 (404)
494 KOG2066|consensus 32.3 5.7E+02 0.012 27.0 10.9 158 117-284 361-532 (846)
495 cd02677 MIT_SNX15 MIT: domain 31.7 1.9E+02 0.0041 20.5 6.7 14 305-318 20-33 (75)
496 PF04090 RNA_pol_I_TF: RNA pol 31.2 3.5E+02 0.0075 23.4 12.2 138 186-337 43-187 (199)
497 TIGR00985 3a0801s04tom mitocho 31.2 1.1E+02 0.0023 25.1 4.7 36 262-297 95-131 (148)
498 KOG2475|consensus 31.2 2.9E+02 0.0063 27.6 8.3 54 68-121 181-239 (587)
499 PF08626 TRAPPC9-Trs120: Trans 30.9 8.1E+02 0.018 27.6 13.5 74 237-310 361-464 (1185)
500 cd02683 MIT_1 MIT: domain cont 30.8 2E+02 0.0043 20.5 7.8 16 269-284 18-33 (77)
No 1
>KOG1070|consensus
Probab=100.00 E-value=4.1e-55 Score=438.57 Aligned_cols=347 Identities=35% Similarity=0.610 Sum_probs=297.1
Q ss_pred ccCCCCCCCCCCCCC-CcccCcccccccc--CCCCCCCCch-hHHHHhhhhcCchhhHHHHHHHHHHHHHHHHHHHHHHh
Q psy17788 15 STTQSNSIPDSLPQV-GFTWGMAMEDLNL--LKPNQDDSED-EEEEVEIKKVKPKLTKAEKLAAAKAEEARIRQAEDELL 90 (365)
Q Consensus 15 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~e~~l~ 90 (365)
+.+.+++-|+++.+. ||.|......... .+-.+++.++ ++.+++....--.+..+.+..+++.+|.+..+...+.+
T Consensus 1356 ~~~~~~~d~g~q~~~~g~~~e~~~d~~~~~~p~~le~s~~td~e~d~~~~~~e~~qde~dee~e~~kee~e~~~~~~e~~ 1435 (1710)
T KOG1070|consen 1356 MEEVAAEDPGFQSSSGGFNLEDAVDEMSETLPDALEDSCETDSEVDEEVEDEELDQDEKDEEKEKDKEEREENRSDEEER 1435 (1710)
T ss_pred hhhhcccCCCccccccceehhhhhhhccccCCchhhhcccchhhhhhccccccccccccchhhhhhhhhccccccchhhc
Confidence 445556668888855 8999865322111 1111111110 11111111110111111123333444555555555666
Q ss_pred c-CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHH
Q psy17788 91 Q-NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKES 169 (365)
Q Consensus 91 ~-~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~ 169 (365)
+ ++.|++.++|+|++..+||++.+|++||+++++.+++++||.+++|||.+|++||+.+..|+|++|+|+++.+|+.+.
T Consensus 1436 dl~~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~ees 1515 (1710)
T KOG1070|consen 1436 DLSRAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEES 1515 (1710)
T ss_pred ccccCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHH
Confidence 6 689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy17788 170 LQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLN 249 (365)
Q Consensus 170 a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~ 249 (365)
..++|+||.+++++..+|..|..+|.+.+++++|.++|+.|+++| .+...+|+.|+.+++++++-+.|+.+++|||+
T Consensus 1516 l~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF---~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~ 1592 (1710)
T KOG1070|consen 1516 LKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF---GQTRKVWIMYADFLLRQNEAEAARELLKRALK 1592 (1710)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh---cchhhHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999 88999999999999999999999999999999
Q ss_pred cCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHH
Q psy17788 250 NLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKP 329 (365)
Q Consensus 250 ~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~ 329 (365)
++|+..|+.++.+||++++++|+.++||++|+..|..+|++.|+|+.|+++++++|++..+|.+|+|++.+++++++|++
T Consensus 1593 ~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKf 1672 (1710)
T KOG1070|consen 1593 SLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKF 1672 (1710)
T ss_pred hcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhcc
Q psy17788 330 LYMKWLKLEEQYGDAEAVENVKKEIEQYVRNSKNK 364 (365)
Q Consensus 330 ~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~~~~ 364 (365)
||++|++||+.+||.+.++.|+.||++||++..++
T Consensus 1673 ffKkwLeyEk~~Gde~~vE~VKarA~EYv~s~~s~ 1707 (1710)
T KOG1070|consen 1673 FFKKWLEYEKSHGDEKNVEYVKARAKEYVESIKSK 1707 (1710)
T ss_pred HHHHHHHHHHhcCchhhHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999997653
No 2
>KOG1915|consensus
Probab=99.96 E-value=3.2e-27 Score=217.00 Aligned_cols=258 Identities=19% Similarity=0.325 Sum_probs=205.3
Q ss_pred CCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHH
Q psy17788 93 GEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQE 172 (365)
Q Consensus 93 ~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~ 172 (365)
....|..+|+|+|..+..+..+|+.|+.+.++...+..||.++.||+++.| .-..+|..|+.++...|++..|++
T Consensus 88 e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lP-----RVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 88 EIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILP-----RVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcc-----hHHHHHHHHHHHHHHhcccHHHHH
Confidence 344789999999999999999999999999999999999999999999999 556888888888888888888888
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q psy17788 173 CLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLP 252 (365)
Q Consensus 173 v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p 252 (365)
+|+|-+...|+..+|..++++..+.+..+.|+.+|++.+-. .+..+.|+.++.|..++|+..-|+.+|.+|+..+.
T Consensus 163 iferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~----HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 163 IFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV----HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee----cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 88888888888888888888888888888888888777654 55677788888888888877777777777777665
Q ss_pred Ccch-HHHHHHHHHHHHHcCCHHHHHHHH--------------------------------------------HHHHHhC
Q psy17788 253 PAVH-VTLITRFALAENKFGDASRAQALL--------------------------------------------EHTLTSY 287 (365)
Q Consensus 253 ~~~~-~~~~~~~a~~~~~~g~~e~A~~~f--------------------------------------------e~~l~~~ 287 (365)
++.. ..++..||.++..+..+++|+.+| +..+..+
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n 318 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN 318 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC
Confidence 5322 335566666666666666665555 4555566
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHH-------HHH-HhcCCHHHHHHHHHHHHHHHH
Q psy17788 288 PARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWL-------KLE-EQYGDAEAVENVKKEIEQYVR 359 (365)
Q Consensus 288 P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l-------~~e-~~~G~~~~a~~v~~kA~~~v~ 359 (365)
|.+.|.|+.|+++....|+.++++.+|+||+. +.||..-+..|.+|+ -|+ ....|.+.++.||+.+++..+
T Consensus 319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIa-nvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIP 397 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIA-NVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIP 397 (677)
T ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc-cCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcC
Confidence 78889999999999999999999999999999 667665556665554 443 345788999999999988665
Q ss_pred h
Q psy17788 360 N 360 (365)
Q Consensus 360 ~ 360 (365)
.
T Consensus 398 H 398 (677)
T KOG1915|consen 398 H 398 (677)
T ss_pred c
Confidence 4
No 3
>KOG1915|consensus
Probab=99.94 E-value=4.4e-25 Score=203.01 Aligned_cols=238 Identities=19% Similarity=0.331 Sum_probs=220.4
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy17788 100 GFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVR 179 (365)
Q Consensus 100 ~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~ 179 (365)
.|+-.+..+.-+...|+.|+.+..+++++..||.+|+|||.... .+..+|+.|+.++++..++..|+.+|.||+.
T Consensus 61 efEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~-----r~itLWlkYae~Emknk~vNhARNv~dRAvt 135 (677)
T KOG1915|consen 61 EFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDY-----RNITLWLKYAEFEMKNKQVNHARNVWDRAVT 135 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc-----ccchHHHHHHHHHHhhhhHhHHHHHHHHHHH
Confidence 48888888888999999999999999999999999999999655 5789999999999999999999999999999
Q ss_pred cCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHH
Q psy17788 180 CNDET-KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVT 258 (365)
Q Consensus 180 ~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~ 258 (365)
.-|.. ..|..++-+....|+...|+++|++-+.- .++.++|..++.|.++.+..+.|+.+|+|-+-.+|+ +.
T Consensus 136 ~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w----~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~---v~ 208 (677)
T KOG1915|consen 136 ILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW----EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPK---VS 208 (677)
T ss_pred hcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC----CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc---HH
Confidence 99975 58999999999999999999999999986 678999999999999999999999999999988887 88
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh---hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHH
Q psy17788 259 LITRFALAENKFGDASRAQALLEHTLTSYPARV---DVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWL 335 (365)
Q Consensus 259 ~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~---~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l 335 (365)
.|.++|.++.++|....|+.+|++++....++. .+...++.++..+..+++||.+|+-|+. ++|......+++.|.
T Consensus 209 ~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld-~~pk~raeeL~k~~~ 287 (677)
T KOG1915|consen 209 NWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALD-HIPKGRAEELYKKYT 287 (677)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcccHHHHHHHHH
Confidence 999999999999999999999999999888763 4678889999999999999999999999 677777899999999
Q ss_pred HHHHhcCCHHHHHHH
Q psy17788 336 KLEEQYGDAEAVENV 350 (365)
Q Consensus 336 ~~e~~~G~~~~a~~v 350 (365)
.||+++||..+++.+
T Consensus 288 ~fEKqfGd~~gIEd~ 302 (677)
T KOG1915|consen 288 AFEKQFGDKEGIEDA 302 (677)
T ss_pred HHHHHhcchhhhHHH
Confidence 999999999888764
No 4
>KOG0495|consensus
Probab=99.93 E-value=1.2e-23 Score=199.87 Aligned_cols=256 Identities=14% Similarity=0.230 Sum_probs=229.4
Q ss_pred CChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy17788 96 VSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLH 175 (365)
Q Consensus 96 ~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ 175 (365)
-++.+|-.+|..+|.+-.+|...+.+.-..|..+.-..++++|+...| ....+|+.|+...-..|+...|+.++.
T Consensus 534 carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p-----kae~lwlM~ake~w~agdv~~ar~il~ 608 (913)
T KOG0495|consen 534 CARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP-----KAEILWLMYAKEKWKAGDVPAARVILD 608 (913)
T ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-----cchhHHHHHHHHHHhcCCcHHHHHHHH
Confidence 456788888888888888888888888888888888888888888888 556788888888888888888888888
Q ss_pred HHHHcCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc
Q psy17788 176 EAVRCNDET-KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPA 254 (365)
Q Consensus 176 ral~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~ 254 (365)
+|++.+|+. .+|+.-..+...+..+++|+.+|.++... .....+|+.++.++.-+++.++|+.+++++|+..|..
T Consensus 609 ~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~----sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f 684 (913)
T KOG0495|consen 609 QAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI----SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDF 684 (913)
T ss_pred HHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc----CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCch
Confidence 888888865 58888888888888999999999988876 5678899999999999999999999999999999996
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHH
Q psy17788 255 VHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKW 334 (365)
Q Consensus 255 ~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~ 334 (365)
..+|+..|+++.+.++.+.|+..|...++.+|+.+.+|..++.++.+.|++.+||.+++|+.- ..+++..+|..-
T Consensus 685 --~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarl---kNPk~~~lwle~ 759 (913)
T KOG0495|consen 685 --HKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARL---KNPKNALLWLES 759 (913)
T ss_pred --HHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh---cCCCcchhHHHH
Confidence 457778899999999999999999999999999999999999999999999999999999965 567899999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHhhhccC
Q psy17788 335 LKLEEQYGDAEAVENVKKEIEQYVRNSKNKW 365 (365)
Q Consensus 335 l~~e~~~G~~~~a~~v~~kA~~~v~~~~~~~ 365 (365)
+.+|...|+.+.|+.++.+|++-+++++-.|
T Consensus 760 Ir~ElR~gn~~~a~~lmakALQecp~sg~LW 790 (913)
T KOG0495|consen 760 IRMELRAGNKEQAELLMAKALQECPSSGLLW 790 (913)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCccchhH
Confidence 9999999999999999999999999998777
No 5
>KOG0495|consensus
Probab=99.92 E-value=8.2e-23 Score=194.31 Aligned_cols=260 Identities=22% Similarity=0.305 Sum_probs=193.4
Q ss_pred CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788 92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ 171 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~ 171 (365)
++.|.+...+.+++..+|+|..+|+.-........+++.||.+|.+|-...| ...+|+.+++++.-.|+.+.|+
T Consensus 598 gdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sg------TeRv~mKs~~~er~ld~~eeA~ 671 (913)
T KOG0495|consen 598 GDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISG------TERVWMKSANLERYLDNVEEAL 671 (913)
T ss_pred CCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC------cchhhHHHhHHHHHhhhHHHHH
Confidence 4455555555555555555555555555555555555555555555554222 2467777888877788888888
Q ss_pred HHHHHHHHcCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy17788 172 ECLHEAVRCNDET-KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNN 250 (365)
Q Consensus 172 ~v~~ral~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~ 250 (365)
.+++++|+.+|.. ++|+.+++++.+.++.+.|+..|...+++. |.++.+|+.++.+..+.|++-.|+.+|+|+...
T Consensus 672 rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c---P~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 672 RLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC---PNSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC---CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 8888888887754 677888888888888888888888888887 888888888888888888888888888888888
Q ss_pred CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHH-------------h--------------
Q psy17788 251 LPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLV-------------K-------------- 303 (365)
Q Consensus 251 ~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~-------------~-------------- 303 (365)
+|++ ..+|...++++.+.|+.+.|..+..++|+.+|++.-+|..-+.++- +
T Consensus 749 NPk~--~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~l 826 (913)
T KOG0495|consen 749 NPKN--ALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKL 826 (913)
T ss_pred CCCc--chhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHH
Confidence 8875 4566777888888888888888888888888888777776663332 1
Q ss_pred ---cCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhccC
Q psy17788 304 ---SDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNSKNKW 365 (365)
Q Consensus 304 ---~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~~~~~ 365 (365)
...++.||..|+|++.. .+.+-+.|.-+..||..||+.+....|+.+...-=+..|..|
T Consensus 827 fw~e~k~~kar~Wf~Ravk~---d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W 888 (913)
T KOG0495|consen 827 FWSEKKIEKAREWFERAVKK---DPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELW 888 (913)
T ss_pred HHHHHHHHHHHHHHHHHHcc---CCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHH
Confidence 13568899999999973 456788999999999999999999999988776666666555
No 6
>KOG4626|consensus
Probab=99.91 E-value=1e-22 Score=192.77 Aligned_cols=252 Identities=15% Similarity=0.095 Sum_probs=132.8
Q ss_pred CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788 92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ 171 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~ 171 (365)
++..++...|-+++..+|.-..+|..++-.+..+|++-.|+..|++|++..| ...+.++.+++.+...+.++.|.
T Consensus 198 Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP-----~f~dAYiNLGnV~ke~~~~d~Av 272 (966)
T KOG4626|consen 198 GRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDP-----NFLDAYINLGNVYKEARIFDRAV 272 (966)
T ss_pred cccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCC-----cchHHHhhHHHHHHHHhcchHHH
Confidence 3344566666666666666666666666666666666666666666666666 55555555555555555555555
Q ss_pred HHHHHHHHcCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy17788 172 ECLHEAVRCNDET-KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNN 250 (365)
Q Consensus 172 ~v~~ral~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~ 250 (365)
..|.+|+...|+. .+|-.++-+|..+|..+-|+..|++++... |..+.++.++|..+...|+..+|..+|.+||..
T Consensus 273 s~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~---P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 273 SCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ---PNFPDAYNNLANALKDKGSVTEAVDCYNKALRL 349 (966)
T ss_pred HHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC---CCchHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence 5555555554432 344444555555555555555555555544 455555555555555555555555555555555
Q ss_pred CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHH
Q psy17788 251 LPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPL 330 (365)
Q Consensus 251 ~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~ 330 (365)
.|+ |...+..+|.++...|.++.|..+|..++..+|.-..+++.++.+|..+|++++|...|+.|+.+ . +.....
T Consensus 350 ~p~--hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~-P~fAda 424 (966)
T KOG4626|consen 350 CPN--HADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--K-PTFADA 424 (966)
T ss_pred CCc--cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--C-chHHHH
Confidence 554 23344444555555555555555555555555555455555555555555555555555555432 1 223344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy17788 331 YMKWLKLEEQYGDAEAVENVKKEIEQ 356 (365)
Q Consensus 331 ~~~~l~~e~~~G~~~~a~~v~~kA~~ 356 (365)
+...+.-++..|+...|...|.+||+
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~ 450 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQ 450 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHh
Confidence 44444444444555555555555444
No 7
>KOG4626|consensus
Probab=99.90 E-value=1.4e-22 Score=191.90 Aligned_cols=258 Identities=14% Similarity=0.099 Sum_probs=212.8
Q ss_pred HHHhc-CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhC
Q psy17788 87 DELLQ-NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYG 165 (365)
Q Consensus 87 ~~l~~-~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g 165 (365)
.+++. ++.+.+...|..+|..+|....+....+..+-..|.+++|..+|.+|+.+.| ...-+|..++-.....|
T Consensus 158 ~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp-----~fAiawsnLg~~f~~~G 232 (966)
T KOG4626|consen 158 AALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQP-----CFAIAWSNLGCVFNAQG 232 (966)
T ss_pred HHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCC-----ceeeeehhcchHHhhcc
Confidence 34555 7777888888888888888888888888888888888888888888888877 56677888888888888
Q ss_pred CHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHH
Q psy17788 166 TKESLQECLHEAVRCNDET-KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHIL 244 (365)
Q Consensus 166 ~~~~a~~v~~ral~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l 244 (365)
+.-.|+..|++|+.+.|+. .+|+.++++|...+.+++|...|.+++..- |.+..++-++|-+|+.+|..+-|+..|
T Consensus 233 ei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr---pn~A~a~gNla~iYyeqG~ldlAI~~Y 309 (966)
T KOG4626|consen 233 EIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR---PNHAVAHGNLACIYYEQGLLDLAIDTY 309 (966)
T ss_pred hHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC---CcchhhccceEEEEeccccHHHHHHHH
Confidence 8888888888888888864 688888888888888888888888888876 888888888888888888888888888
Q ss_pred HHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q psy17788 245 QRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPP 324 (365)
Q Consensus 245 ~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~ 324 (365)
+|||...|+. ...+..+|+.+...|+..+|...|.++|..+|+..+....++.++...|.++.|..+|+.+++. .
T Consensus 310 kral~~~P~F--~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~- 384 (966)
T KOG4626|consen 310 KRALELQPNF--PDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--F- 384 (966)
T ss_pred HHHHhcCCCc--hHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--C-
Confidence 8888888886 4466788888888888888888888888888888888888888888888888888888888873 2
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy17788 325 KKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQY 357 (365)
Q Consensus 325 ~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~ 357 (365)
+...........+++.+|+.+.|...|+.|+..
T Consensus 385 p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI 417 (966)
T KOG4626|consen 385 PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI 417 (966)
T ss_pred hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc
Confidence 335566777788888888888888888888764
No 8
>KOG2047|consensus
Probab=99.90 E-value=5.2e-21 Score=181.84 Aligned_cols=264 Identities=17% Similarity=0.304 Sum_probs=210.2
Q ss_pred CCCChHHHHHHhh-cCCCC-----HHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCH
Q psy17788 94 EPVSPDGFDRMLL-GQPNN-----SELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTK 167 (365)
Q Consensus 94 ~p~a~~~fe~~l~-~~p~~-----~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~ 167 (365)
..+.+..|..+++ .+|.- ..+|+.++.+|...|+++.||.+|++|++ .|+....+...+|.+++.++.++.++
T Consensus 363 ~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~-V~y~~v~dLa~vw~~waemElrh~~~ 441 (835)
T KOG2047|consen 363 AAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATK-VPYKTVEDLAEVWCAWAEMELRHENF 441 (835)
T ss_pred hHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhc-CCccchHHHHHHHHHHHHHHHhhhhH
Confidence 3366778888875 46653 37999999999999999999999999999 78776667789999999999999999
Q ss_pred HHHHHHHHHHHHcCC-------------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Q psy17788 168 ESLQECLHEAVRCND-------------------ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCA 228 (365)
Q Consensus 168 ~~a~~v~~ral~~~~-------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a 228 (365)
+.|..+.++|+.... +..+|..++++....|-++..+.+|++++..- -..|++.++||
T Consensus 442 ~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLr---iaTPqii~NyA 518 (835)
T KOG2047|consen 442 EAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLR---IATPQIIINYA 518 (835)
T ss_pred HHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh---cCCHHHHHHHH
Confidence 999999999975421 45689999999999999999999999998876 55677777777
Q ss_pred HHHHHcC---------------------------------------ChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Q psy17788 229 TLLLRLG---------------------------------------QKDTARHILQRGLNNLPPAVHVTLITRFALAENK 269 (365)
Q Consensus 229 ~~~~~~g---------------------------------------~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~ 269 (365)
.|+..+. +.+.|+.+|++||...|....-.++..|+.++.+
T Consensus 519 mfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe 598 (835)
T KOG2047|consen 519 MFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEE 598 (835)
T ss_pred HHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 7654432 5677888888888877754334466777888888
Q ss_pred cCCHHHH------------------------------------HHHHHHHHHhCCCC--hhHHHHHHHHHHhcCChHHHH
Q psy17788 270 FGDASRA------------------------------------QALLEHTLTSYPAR--VDVWGVYVDMLVKSDRVDLGR 311 (365)
Q Consensus 270 ~g~~e~A------------------------------------~~~fe~~l~~~P~~--~~~w~~~~~~~~~~g~~~~Ar 311 (365)
.|-..+| |.+|+++++..|+. ......+++++.+.|.+++||
T Consensus 599 ~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRAR 678 (835)
T KOG2047|consen 599 HGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRAR 678 (835)
T ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 7765544 44555666665554 345667779999999999999
Q ss_pred HHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhc
Q psy17788 312 QVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNSKN 363 (365)
Q Consensus 312 ~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~~~ 363 (365)
.+|--+.. -++|.....+|..|-.||.+||+.++...++ |....|++..|
T Consensus 679 aIya~~sq-~~dPr~~~~fW~twk~FEvrHGnedT~keML-RikRsvqa~yn 728 (835)
T KOG2047|consen 679 AIYAHGSQ-ICDPRVTTEFWDTWKEFEVRHGNEDTYKEML-RIKRSVQATYN 728 (835)
T ss_pred HHHHhhhh-cCCCcCChHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHhhh
Confidence 99999987 5688889999999999999999988777775 67777777655
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=1.3e-20 Score=191.09 Aligned_cols=261 Identities=10% Similarity=0.035 Sum_probs=213.9
Q ss_pred HHHHhc-CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHh
Q psy17788 86 EDELLQ-NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLY 164 (365)
Q Consensus 86 e~~l~~-~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~ 164 (365)
...+.. ++..+|+..|+++|..+|+ +..|..++.++...|++++|+..++++|...| ++..+|...+..+...
T Consensus 134 G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-----~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 134 GNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDP-----DYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-----CCHHHHHHHHHHHHHc
Confidence 334444 6666889999999988886 67888888889889999999999999998777 4556666555555555
Q ss_pred CCHHH---------------------------------------------------------------------------
Q psy17788 165 GTKES--------------------------------------------------------------------------- 169 (365)
Q Consensus 165 g~~~~--------------------------------------------------------------------------- 169 (365)
|+++.
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccc
Confidence 55444
Q ss_pred -------------------------HHHHHHHHHHcC---CC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCc
Q psy17788 170 -------------------------LQECLHEAVRCN---DE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSS 220 (365)
Q Consensus 170 -------------------------a~~v~~ral~~~---~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 220 (365)
|...|++++... |. ..+|..++.++...|++++|+..|++++... |.+
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~---P~~ 364 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD---PRV 364 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCc
Confidence 444444454432 21 2356777888888999999999999999988 889
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q psy17788 221 VNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDM 300 (365)
Q Consensus 221 ~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~ 300 (365)
...|+.+|.++...|++++|...|++++...|.+ ..++...|.+++..|++++|+..|++++..+|++..+|..++.+
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~ 442 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSED--PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVT 442 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHH
Confidence 9999999999999999999999999999999885 55778889999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q psy17788 301 LVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRN 360 (365)
Q Consensus 301 ~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~ 360 (365)
+.+.|++++|...|++++.. .+....+|..++......|+++.|...+++|++..+.
T Consensus 443 ~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~ 499 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKKN---FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKE 499 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Confidence 99999999999999999973 2446778888899889999999999999999987543
No 10
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=2.7e-20 Score=189.19 Aligned_cols=253 Identities=12% Similarity=0.073 Sum_probs=172.7
Q ss_pred CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788 92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ 171 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~ 171 (365)
++..+|+..|++++..+|+++.+|..++..+...|+++.|+..|++++...| +...+|..+++++...|+++.|.
T Consensus 90 g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P-----~~~~a~~~la~~l~~~g~~~eA~ 164 (656)
T PRK15174 90 SQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFS-----GNSQIFALHLRTLVLMDKELQAI 164 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHCCChHHHH
Confidence 4555778888888888888888888888888888888888888888888777 66778888888888888888888
Q ss_pred HHHHHHHHcCCCHH-HHHHHH----------------------------------HHHHHhCCHHHHHHHHHHHHHHhcC
Q psy17788 172 ECLHEAVRCNDETK-VYMNMM----------------------------------EIYAASAQIRDLESTVKLLLKKAGQ 216 (365)
Q Consensus 172 ~v~~ral~~~~~~~-~~~~l~----------------------------------~~~~~~g~~~~A~~~~~~al~~~~~ 216 (365)
..+.+++...|+.. .+..++ .++...|++++|+..|++++...
T Consensus 165 ~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-- 242 (656)
T PRK15174 165 SLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-- 242 (656)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--
Confidence 88888877776443 332221 12223344444444444444444
Q ss_pred CCCcHHHHHHHHHHHHHcCChHH----HHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh
Q psy17788 217 THSSVNIYLQCATLLLRLGQKDT----ARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVD 292 (365)
Q Consensus 217 ~~~~~~~~~~~a~~~~~~g~~~~----A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~ 292 (365)
|.++.++..+|.++...|++++ |...|++++...|.+ ..++..+|.++...|++++|...|++++..+|++..
T Consensus 243 -p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~--~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~ 319 (656)
T PRK15174 243 -LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDN--VRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPY 319 (656)
T ss_pred -CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 6666667777777777777664 677777777777763 455566677777777777777777777777777777
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy17788 293 VWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQY 357 (365)
Q Consensus 293 ~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~ 357 (365)
++..++.++...|++++|...|++++.. .|. ....+...+......|+.+.|...++++++.
T Consensus 320 a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~-~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 320 VRAMYARALRQVGQYTAASDEFVQLARE--KGV-TSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--Ccc-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 7777777777777777777777777753 222 2233333344455667777777777777665
No 11
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=1e-20 Score=191.91 Aligned_cols=252 Identities=9% Similarity=0.060 Sum_probs=202.0
Q ss_pred CChHHHHHHhhc---CCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHH
Q psy17788 96 VSPDGFDRMLLG---QPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQE 172 (365)
Q Consensus 96 ~a~~~fe~~l~~---~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~ 172 (365)
+|+..|++++.. .|+...+|..++.++...|++++|+..|++++...| .....|+.++.++...|+++.|..
T Consensus 312 ~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-----~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 312 EAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-----RVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CcHHHHHHHHHHHHHCCCHHHHHH
Confidence 566778888865 477778888888888888899999999999888777 567788888888888888889999
Q ss_pred HHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q psy17788 173 CLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNL 251 (365)
Q Consensus 173 v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~ 251 (365)
.|++++..+|. ..+|..++.++...|++++|+..|++++... |.+..+|..+|.++...|++++|...|++++...
T Consensus 387 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~---P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 463 (615)
T TIGR00990 387 DFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD---PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF 463 (615)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 99998888874 5678888888888899999999999988887 8888888888888888899999999999888888
Q ss_pred CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHH------H-HHHHHHhcCChHHHHHHHHHHHhCCCCC
Q psy17788 252 PPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWG------V-YVDMLVKSDRVDLGRQVIQRAVTQKLPP 324 (365)
Q Consensus 252 p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~------~-~~~~~~~~g~~~~Ar~~~eral~~~l~~ 324 (365)
|.. ..++..+|.++...|++++|+..|++++...|.....+. . .+.++...|++++|..+|++++.+ .
T Consensus 464 P~~--~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~- 538 (615)
T TIGR00990 464 PEA--PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII--D- 538 (615)
T ss_pred CCC--hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--C-
Confidence 885 446677788888889999999999998888886533222 2 222334468888899999988874 3
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q psy17788 325 KKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRN 360 (365)
Q Consensus 325 ~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~ 360 (365)
+.....+...+......|+.+.|...+++|++...+
T Consensus 539 p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 539 PECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 345567777888888888988888888888877654
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=2.9e-20 Score=188.94 Aligned_cols=266 Identities=12% Similarity=0.096 Sum_probs=233.9
Q ss_pred HHHHHHHHHHHhc-CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHH
Q psy17788 79 EARIRQAEDELLQ-NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSL 157 (365)
Q Consensus 79 e~~~~~~e~~l~~-~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~ 157 (365)
++.|+-.-.+++. ++.++|...++.++...|+++.++..++...+..|+++.|...|++++...| ++..+|..+
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-----~~~~a~~~l 116 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-----CQPEDVLLV 116 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-----CChHHHHHH
Confidence 4445544444555 8888999999999999999999999999999999999999999999999999 778999999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHH------------
Q psy17788 158 LNLEHLYGTKESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIY------------ 224 (365)
Q Consensus 158 ~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~------------ 224 (365)
+.++...|+++.|+..|++++..+|. ..+|..++.++...|++++|...|.+++... |.++.++
T Consensus 117 a~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~---P~~~~a~~~~~~l~~~g~~ 193 (656)
T PRK15174 117 ASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV---PPRGDMIATCLSFLNKSRL 193 (656)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHcCCH
Confidence 99999999999999999999999885 4688889999999999999999998887665 4333332
Q ss_pred ----------------------HHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHH----HHH
Q psy17788 225 ----------------------LQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASR----AQA 278 (365)
Q Consensus 225 ----------------------~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~----A~~ 278 (365)
..++..+...|++++|...|++++...|.+ ..++..+|.++...|+++. |..
T Consensus 194 ~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~--~~~~~~Lg~~l~~~G~~~eA~~~A~~ 271 (656)
T PRK15174 194 PEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDG--AALRRSLGLAYYQSGRSREAKLQAAE 271 (656)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCchhhHHHHHH
Confidence 344778899999999999999999999985 5677888999999999985 899
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy17788 279 LLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQY 357 (365)
Q Consensus 279 ~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~ 357 (365)
.|++++..+|++..+|..++.++...|++++|..+|++++.+ . +....++..++......|+++.|...+++++..
T Consensus 272 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~ 347 (656)
T PRK15174 272 HWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--H-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE 347 (656)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999984 3 446778888899999999999999999998864
No 13
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=1.1e-19 Score=174.35 Aligned_cols=260 Identities=21% Similarity=0.187 Sum_probs=220.9
Q ss_pred hcCCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHH
Q psy17788 90 LQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKES 169 (365)
Q Consensus 90 ~~~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~ 169 (365)
..+...+|+..|++++..+|++..+|..++.++...|++++|..++++++. .|.........+|..++.++...|+++.
T Consensus 47 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLS-RPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred hcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 336666899999999999999999999999999999999999999999988 3422112234678888999999999999
Q ss_pred HHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCc-----HHHHHHHHHHHHHcCChHHHHHH
Q psy17788 170 LQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSS-----VNIYLQCATLLLRLGQKDTARHI 243 (365)
Q Consensus 170 a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----~~~~~~~a~~~~~~g~~~~A~~~ 243 (365)
|..+|.+++...|. ..++..++.++...|++++|.++|+++++.. +.+ ...+..++..+...|++++|..+
T Consensus 126 A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 126 AEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG---GDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999987764 4678889999999999999999999999876 433 33567888899999999999999
Q ss_pred HHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q psy17788 244 LQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPAR-VDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKL 322 (365)
Q Consensus 244 l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~-~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l 322 (365)
|++++...|.. ...+..+|.++.+.|++++|..+|++++...|.+ ..++..++.++...|+++.|..+|++++..
T Consensus 203 ~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 278 (389)
T PRK11788 203 LKKALAADPQC--VRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE-- 278 (389)
T ss_pred HHHHHhHCcCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 99999988875 5566778999999999999999999999988876 467888999999999999999999999974
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q psy17788 323 PPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVR 359 (365)
Q Consensus 323 ~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~ 359 (365)
.|. .. .+...+......|+.+.|..+++++++..+
T Consensus 279 ~p~-~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~P 313 (389)
T PRK11788 279 YPG-AD-LLLALAQLLEEQEGPEAAQALLREQLRRHP 313 (389)
T ss_pred CCC-ch-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCc
Confidence 333 33 347778888889999999999999987643
No 14
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.88 E-value=7e-20 Score=191.95 Aligned_cols=255 Identities=15% Similarity=0.105 Sum_probs=154.7
Q ss_pred CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccc------------------------
Q psy17788 92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNE------------------------ 147 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~------------------------ 147 (365)
++..+++..|++++..+|+++..|..++.++...|++++|..+|++++...|....
T Consensus 615 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 694 (899)
T TIGR02917 615 GDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKS 694 (899)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44446666666666666666666666666666666666666666666665552100
Q ss_pred -----cchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHH
Q psy17788 148 -----EDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVN 222 (365)
Q Consensus 148 -----~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 222 (365)
.....+|..++.++...|+++.|...|++++...|+..++..++.++...|++++|...++++++.. |.++.
T Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~---~~~~~ 771 (899)
T TIGR02917 695 LQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH---PNDAV 771 (899)
T ss_pred HHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHH
Confidence 0223444444555555555666666666666555555555556666666666666666666666655 66666
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q psy17788 223 IYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLV 302 (365)
Q Consensus 223 ~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~ 302 (365)
++..++.++...|++++|..+|++++...|.+ ..++..++.++...|+ .+|+.++++++...|+++.+|..++.++.
T Consensus 772 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (899)
T TIGR02917 772 LRTALAELYLAQKDYDKAIKHYRTVVKKAPDN--AVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLV 848 (899)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 66666666666666666666666666666653 4455555666666666 55666666666666666666666666666
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy17788 303 KSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIE 355 (365)
Q Consensus 303 ~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~ 355 (365)
..|++++|..+|++++.. .| ....++..++......|+.+.|+.++++++
T Consensus 849 ~~g~~~~A~~~~~~a~~~--~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 849 EKGEADRALPLLRKAVNI--AP-EAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HcCCHHHHHHHHHHHHhh--CC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 666666666666666653 22 245566666666666666666666666654
No 15
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.87 E-value=2.5e-19 Score=187.82 Aligned_cols=253 Identities=15% Similarity=0.117 Sum_probs=173.6
Q ss_pred CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788 92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ 171 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~ 171 (365)
++..+|+..|++++..+|++..+|..++..+...|++++|..+|++++...| .+..+|..++.++...|+.+.|.
T Consensus 479 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~ 553 (899)
T TIGR02917 479 GDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-----KNLRAILALAGLYLRTGNEEEAV 553 (899)
T ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-----CcHHHHHHHHHHHHHcCCHHHHH
Confidence 3444667777777777777777777777777777777777777777777666 45566777777777777777777
Q ss_pred HHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy17788 172 ECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNN 250 (365)
Q Consensus 172 ~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~ 250 (365)
..|++++..+|. ...+..++.+|...|++++|..++++++... |.++.+|..++.++...|++++|+..|++++..
T Consensus 554 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 630 (899)
T TIGR02917 554 AWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA---PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL 630 (899)
T ss_pred HHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777766653 3456666777777777777777777777666 667777777777777777777777777777777
Q ss_pred CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHH
Q psy17788 251 LPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPL 330 (365)
Q Consensus 251 ~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~ 330 (365)
.|.. ...+..++.++...|++++|..+|++++..+|++...|..++.++...|+++.|..+++++... .+.....
T Consensus 631 ~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~ 705 (899)
T TIGR02917 631 QPDS--ALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ---HPKAALG 705 (899)
T ss_pred CCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CcCChHH
Confidence 6664 3455666777777777777777777777777777777777777777777777777777666652 1223445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy17788 331 YMKWLKLEEQYGDAEAVENVKKEIEQY 357 (365)
Q Consensus 331 ~~~~l~~e~~~G~~~~a~~v~~kA~~~ 357 (365)
|...+......|+++.|..++.++++.
T Consensus 706 ~~~~~~~~~~~g~~~~A~~~~~~~~~~ 732 (899)
T TIGR02917 706 FELEGDLYLRQKDYPAAIQAYRKALKR 732 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 555555666667777777777666653
No 16
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.86 E-value=2.1e-21 Score=178.14 Aligned_cols=259 Identities=14% Similarity=0.212 Sum_probs=120.0
Q ss_pred HhcCCCCCChHHHHHHhhc--CCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCC
Q psy17788 89 LLQNGEPVSPDGFDRMLLG--QPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGT 166 (365)
Q Consensus 89 l~~~~~p~a~~~fe~~l~~--~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~ 166 (365)
+..++...|..++.+.+.. .|++...|..++......++++.|+..|++++...+ .+......++.+ ...++
T Consensus 19 ~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-----~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 19 YQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-----ANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----cccccccccccc-ccccc
Confidence 3336677999999777655 489999999999999999999999999999999766 456677778887 68889
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy17788 167 KESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQR 246 (365)
Q Consensus 167 ~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~r 246 (365)
++.|..+++++.+..++...+..++.++...|+++++..+++++.... ..+.++.+|..+|.++.+.|+.++|+.+|++
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELP-AAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T----T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999998888777788888999999999999999999977532 2267899999999999999999999999999
Q ss_pred HHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCC
Q psy17788 247 GLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKK 326 (365)
Q Consensus 247 al~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~ 326 (365)
++...|++ ..++..++.++...|+.++++.++.......|.++.+|..++.++...|+++.|..+|++++.. .+.
T Consensus 172 al~~~P~~--~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~---~p~ 246 (280)
T PF13429_consen 172 ALELDPDD--PDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL---NPD 246 (280)
T ss_dssp HHHH-TT---HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH---STT
T ss_pred HHHcCCCC--HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccc---ccc
Confidence 99999996 4566778889999999999999999999999999999999999999999999999999999983 455
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q psy17788 327 LKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVR 359 (365)
Q Consensus 327 ~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~ 359 (365)
...+...|++.....|..+.|..++.++...+.
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l~ 279 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQALRLLR 279 (280)
T ss_dssp -HHHHHHHHHHHT--------------------
T ss_pred ccccccccccccccccccccccccccccccccC
Confidence 778899999999999999999999999987653
No 17
>KOG1070|consensus
Probab=99.86 E-value=1.2e-19 Score=184.36 Aligned_cols=211 Identities=14% Similarity=0.211 Sum_probs=194.7
Q ss_pred HHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC------CHHHHHHHHHHHHHhCCHHHHHHH
Q psy17788 133 SIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND------ETKVYMNMMEIYAASAQIRDLEST 206 (365)
Q Consensus 133 ~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~------~~~~~~~l~~~~~~~g~~~~A~~~ 206 (365)
+-|+|.+...| +..-+|+.|+.+....++.++|+++++|||.... ...+|..|.++....|.-+...++
T Consensus 1445 eDferlvrssP-----NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1445 EDFERLVRSSP-----NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred HHHHHHHhcCC-----CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 56889999899 7789999999999999999999999999998753 345999999999999999999999
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17788 207 VKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTS 286 (365)
Q Consensus 207 ~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~ 286 (365)
|++|++. .+...++..+..+|...+++++|.++|+.+++.+.. ...+|..||.+++++++.+.|+.++.+||..
T Consensus 1520 FeRAcqy----cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q--~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~ 1593 (1710)
T KOG1070|consen 1520 FERACQY----CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ--TRKVWIMYADFLLRQNEAEAARELLKRALKS 1593 (1710)
T ss_pred HHHHHHh----cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc--hhhHHHHHHHHHhcccHHHHHHHHHHHHHhh
Confidence 9999996 567899999999999999999999999999999885 3668899999999999999999999999999
Q ss_pred CCC--ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy17788 287 YPA--RVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQY 357 (365)
Q Consensus 287 ~P~--~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~ 357 (365)
.|+ ..++...+++++.++|+.+++|.+|+-.+. ..|+..++|..|++.|.+||+.+.++.+|+|++..
T Consensus 1594 lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~---ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1594 LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLS---AYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHh---hCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 999 789999999999999999999999999998 46678999999999999999999999999999863
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.85 E-value=9.7e-19 Score=188.70 Aligned_cols=253 Identities=12% Similarity=0.052 Sum_probs=177.6
Q ss_pred CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHH------------
Q psy17788 92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLN------------ 159 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~------------ 159 (365)
++..+|+..|++++..+|++..++..++.++...|++++|+..|++++...|. +..+|..++.
T Consensus 365 g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-----~~~a~~~L~~l~~~~~~~~A~~ 439 (1157)
T PRK11447 365 NNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-----NTNAVRGLANLYRQQSPEKALA 439 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHhcCHHHHHH
Confidence 56668999999999999999999999999999999999999999999998883 3444443333
Q ss_pred ------------------------------HHHHhCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHH
Q psy17788 160 ------------------------------LEHLYGTKESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVK 208 (365)
Q Consensus 160 ------------------------------l~~~~g~~~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 208 (365)
++...|+++.|+..|+++++.+|+ ..++..++.+|.+.|++++|+.+|+
T Consensus 440 ~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~ 519 (1157)
T PRK11447 440 FIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMR 519 (1157)
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 334568899999999999999885 4577888999999999999999999
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH----------------------------------------
Q psy17788 209 LLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGL---------------------------------------- 248 (365)
Q Consensus 209 ~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral---------------------------------------- 248 (365)
++++.. |.++.+++.++.++...|+.++|...++++.
T Consensus 520 ~al~~~---P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l 596 (1157)
T PRK11447 520 RLAQQK---PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL 596 (1157)
T ss_pred HHHHcC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 998877 7777766666555555555555544443321
Q ss_pred hcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcH
Q psy17788 249 NNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLK 328 (365)
Q Consensus 249 ~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~ 328 (365)
...|.+ ..++..+|.++.+.|++++|+..|++++...|++++++..++.++...|++++|+.+|++++.. .+...
T Consensus 597 ~~~p~~--~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~---~p~~~ 671 (1157)
T PRK11447 597 RQQPPS--TRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT---ANDSL 671 (1157)
T ss_pred HhCCCC--chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc---CCCCh
Confidence 112332 2234455666666666666666666666666666666666666666666666666666666542 22334
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy17788 329 PLYMKWLKLEEQYGDAEAVENVKKEIEQY 357 (365)
Q Consensus 329 ~~~~~~l~~e~~~G~~~~a~~v~~kA~~~ 357 (365)
.++..........|+.+.|..++++++..
T Consensus 672 ~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 672 NTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 44555555555566666666666666553
No 19
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.85 E-value=1.9e-18 Score=186.39 Aligned_cols=201 Identities=16% Similarity=0.131 Sum_probs=163.5
Q ss_pred CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccch-------HHHH--HHHHHHHH
Q psy17788 92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDR-------LNVW--TSLLNLEH 162 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~-------~~~w--~~~~~l~~ 162 (365)
++..+|+..|++++..+|+++.+|..++.++...|++++|+..|++++...|....... ...| ...+....
T Consensus 283 g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~ 362 (1157)
T PRK11447 283 GQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAAL 362 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHH
Confidence 66679999999999999999999999999999999999999999999998874321100 0122 22345567
Q ss_pred HhCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH-----------
Q psy17788 163 LYGTKESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATL----------- 230 (365)
Q Consensus 163 ~~g~~~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~----------- 230 (365)
..|+++.|+..|++++..+|. ..++..++.++...|++++|+..|+++++.. |.+..++..++.+
T Consensus 363 ~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~---p~~~~a~~~L~~l~~~~~~~~A~~ 439 (1157)
T PRK11447 363 KANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD---PGNTNAVRGLANLYRQQSPEKALA 439 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHhcCHHHHHH
Confidence 789999999999999999885 4578888999999999999999999999988 7777766555443
Q ss_pred -------------------------------HHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHH
Q psy17788 231 -------------------------------LLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQAL 279 (365)
Q Consensus 231 -------------------------------~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~ 279 (365)
+...|++++|+.+|+++++..|.+ .+++..+|.++...|++++|...
T Consensus 440 ~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~--~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 440 FIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGS--VWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHH
Confidence 345688999999999999999985 55777889999999999999999
Q ss_pred HHHHHHhCCCChhHHHHH
Q psy17788 280 LEHTLTSYPARVDVWGVY 297 (365)
Q Consensus 280 fe~~l~~~P~~~~~w~~~ 297 (365)
|++++..+|.+++.+..+
T Consensus 518 l~~al~~~P~~~~~~~a~ 535 (1157)
T PRK11447 518 MRRLAQQKPNDPEQVYAY 535 (1157)
T ss_pred HHHHHHcCCCCHHHHHHH
Confidence 999988888776654433
No 20
>KOG2047|consensus
Probab=99.84 E-value=4.4e-19 Score=168.84 Aligned_cols=252 Identities=17% Similarity=0.289 Sum_probs=215.0
Q ss_pred HhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCcccc-chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Q psy17788 104 MLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEE-DRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND 182 (365)
Q Consensus 104 ~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~-~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~ 182 (365)
+|..+|++..-|.....++ .|+..+-..+|..|++...+.... .-..+|..++.++...|+.+.|+.+|++|+..+-
T Consensus 341 lLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y 418 (835)
T KOG2047|consen 341 LLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY 418 (835)
T ss_pred HHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc
Confidence 5678999999999987765 677888999999999876544333 3468999999999999999999999999998752
Q ss_pred -----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcC---------C------CCcHHHHHHHHHHHHHcCChHHHHH
Q psy17788 183 -----ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQ---------T------HSSVNIYLQCATLLLRLGQKDTARH 242 (365)
Q Consensus 183 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---------~------~~~~~~~~~~a~~~~~~g~~~~A~~ 242 (365)
-..+|..++.+..+..+++.|.++.++++..... . ..+..+|..|++++...|-++..+.
T Consensus 419 ~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~ 498 (835)
T KOG2047|consen 419 KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKA 498 (835)
T ss_pred cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHH
Confidence 2459999999999999999999999999854200 0 2356789999999999999999999
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChhHHHHHHHHHHh-cC--ChHHHHHHHHHH
Q psy17788 243 ILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSY--PARVDVWGVYVDMLVK-SD--RVDLGRQVIQRA 317 (365)
Q Consensus 243 ~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~--P~~~~~w~~~~~~~~~-~g--~~~~Ar~~~era 317 (365)
+|++.+..---. ..+..+||.++..+.-++++..+|++.+..+ |.-.++|+.|..-.++ .| ..++||.+|++|
T Consensus 499 vYdriidLriaT--Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqa 576 (835)
T KOG2047|consen 499 VYDRIIDLRIAT--PQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQA 576 (835)
T ss_pred HHHHHHHHhcCC--HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 999999874332 3477899999999999999999999999875 6778999999886654 33 789999999999
Q ss_pred HhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q psy17788 318 VTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRN 360 (365)
Q Consensus 318 l~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~ 360 (365)
+. .+||...+.||..|..||..+|-...+..|++||-.-|+.
T Consensus 577 L~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~ 618 (835)
T KOG2047|consen 577 LD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKE 618 (835)
T ss_pred Hh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCH
Confidence 99 7899999999999999999999999999999999876653
No 21
>KOG1126|consensus
Probab=99.84 E-value=1.8e-19 Score=172.75 Aligned_cols=254 Identities=12% Similarity=0.098 Sum_probs=227.9
Q ss_pred CCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccc---------------------------
Q psy17788 95 PVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNE--------------------------- 147 (365)
Q Consensus 95 p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~--------------------------- 147 (365)
.+|+..|+++-...++.+.+..+++..|...+++++|+.+|+.+-+..|.+-+
T Consensus 336 ~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~ 415 (638)
T KOG1126|consen 336 REALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLID 415 (638)
T ss_pred HHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 37889999976788999999999999999999999999999999888888732
Q ss_pred --cchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHH
Q psy17788 148 --EDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDET-KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIY 224 (365)
Q Consensus 148 --~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 224 (365)
.+.++.|.+++|++..+++.+.|++.|+||++.+|.. -+|..++.=+.....++.|...|+.++... |.+..+|
T Consensus 416 ~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~---~rhYnAw 492 (638)
T KOG1126|consen 416 TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD---PRHYNAW 492 (638)
T ss_pred hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC---chhhHHH
Confidence 2457889999999999999999999999999999955 578888888888899999999999999998 9999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc
Q psy17788 225 LQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKS 304 (365)
Q Consensus 225 ~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~ 304 (365)
+.+|.+|+++++++.|...|++|+.++|.+ ..++..+|.++.+.|..++|..+|++|+..+|+++-.-+..+.++...
T Consensus 493 YGlG~vy~Kqek~e~Ae~~fqkA~~INP~n--svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~ 570 (638)
T KOG1126|consen 493 YGLGTVYLKQEKLEFAEFHFQKAVEINPSN--SVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSL 570 (638)
T ss_pred HhhhhheeccchhhHHHHHHHhhhcCCccc--hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhh
Confidence 999999999999999999999999999996 556677899999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy17788 305 DRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQ 356 (365)
Q Consensus 305 g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~ 356 (365)
+++++|...+|..-.. . +....++...+..++..|....|..-+--|.+
T Consensus 571 ~~~~eal~~LEeLk~~--v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 571 GRYVEALQELEELKEL--V-PQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred cchHHHHHHHHHHHHh--C-cchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 9999999999999874 3 44667777888889999998888776666654
No 22
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.82 E-value=1.1e-17 Score=160.36 Aligned_cols=233 Identities=15% Similarity=0.081 Sum_probs=203.5
Q ss_pred HHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-----HHHHHHH
Q psy17788 116 VKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-----TKVYMNM 190 (365)
Q Consensus 116 ~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-----~~~~~~l 190 (365)
+..+..+...|++++|...|++++...| .+..+|..++.++...|+++.|..++++++...+. ..++..+
T Consensus 39 y~~g~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~L 113 (389)
T PRK11788 39 YFKGLNFLLNEQPDKAIDLFIEMLKVDP-----ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQEL 113 (389)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCc-----ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 3445667888999999999999999888 66789999999999999999999999999876432 2467888
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcch---HHHHHHHHHHH
Q psy17788 191 MEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVH---VTLITRFALAE 267 (365)
Q Consensus 191 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~---~~~~~~~a~~~ 267 (365)
+.+|...|++++|..+|+++++.. +.+..++..++.++...|++++|..++++++...|.... ..++..+|.++
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 190 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDEG---DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQA 190 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCC---cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 999999999999999999999876 788999999999999999999999999999988776433 23456778888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHH
Q psy17788 268 NKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAV 347 (365)
Q Consensus 268 ~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a 347 (365)
...|++++|..+|++++..+|+...++..++.++...|++++|..+|++++.. .|.....++...+..+...|+.+.+
T Consensus 191 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~l~~~~~~~g~~~~A 268 (389)
T PRK11788 191 LARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ--DPEYLSEVLPKLMECYQALGDEAEG 268 (389)
T ss_pred HhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--ChhhHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999973 3444456778888888899999999
Q ss_pred HHHHHHHHHHH
Q psy17788 348 ENVKKEIEQYV 358 (365)
Q Consensus 348 ~~v~~kA~~~v 358 (365)
..+++++++..
T Consensus 269 ~~~l~~~~~~~ 279 (389)
T PRK11788 269 LEFLRRALEEY 279 (389)
T ss_pred HHHHHHHHHhC
Confidence 99999988754
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.82 E-value=1.8e-17 Score=173.16 Aligned_cols=242 Identities=12% Similarity=0.009 Sum_probs=110.6
Q ss_pred ChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy17788 97 SPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHE 176 (365)
Q Consensus 97 a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~r 176 (365)
|+..|.+++...|++. ..+.++..+...|+++.|+..|++++...| ....|..++.+....|+.+.|...|.+
T Consensus 495 Ai~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p------~~~a~~~la~all~~Gd~~eA~~~l~q 567 (987)
T PRK09782 495 ALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDM------SNEDLLAAANTAQAAGNGAARDRWLQQ 567 (987)
T ss_pred HHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCC------CcHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4444444444444332 123333333444555555555544443211 112344444444444555555555555
Q ss_pred HHHcCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc
Q psy17788 177 AVRCNDETK-VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV 255 (365)
Q Consensus 177 al~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~ 255 (365)
++...|... .+..++......|++++|...|++++... |. +.+|..+|.++.+.|++++|...|++++...|++
T Consensus 568 AL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~---P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~- 642 (987)
T PRK09782 568 AEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA---PS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNN- 642 (987)
T ss_pred HHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC---CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-
Confidence 554443321 22222222223355555555555555544 42 4555555555555555555555555555555553
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHH
Q psy17788 256 HVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWL 335 (365)
Q Consensus 256 ~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l 335 (365)
..++..+|.++...|++++|+..|++++..+|+++.+|..++.++...|+++.|+..|++++.+ . +....+-..+.
T Consensus 643 -~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~-P~~a~i~~~~g 718 (987)
T PRK09782 643 -SNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD--I-DNQALITPLTP 718 (987)
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--C-CCCchhhhhhh
Confidence 2344444555555555555555555555555555555555555555555555555555555542 1 22333334444
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q psy17788 336 KLEEQYGDAEAVENVKKEI 354 (365)
Q Consensus 336 ~~e~~~G~~~~a~~v~~kA 354 (365)
.+....+++..+...+.|+
T Consensus 719 ~~~~~~~~~~~a~~~~~r~ 737 (987)
T PRK09782 719 EQNQQRFNFRRLHEEVGRR 737 (987)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.81 E-value=1.8e-17 Score=173.14 Aligned_cols=249 Identities=12% Similarity=0.022 Sum_probs=217.5
Q ss_pred CChHHHHHHhhcCCC--CHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHH
Q psy17788 96 VSPDGFDRMLLGQPN--NSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQEC 173 (365)
Q Consensus 96 ~a~~~fe~~l~~~p~--~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v 173 (365)
.+...+.+++..+|. ++.+|..++.++.. ++.++|...|.+++...|. .. ....++......|+++.|+..
T Consensus 459 ~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd-----~~-~~L~lA~al~~~Gr~eeAi~~ 531 (987)
T PRK09782 459 DNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPD-----AW-QHRAVAYQAYQVEDYATALAA 531 (987)
T ss_pred hhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCc-----hH-HHHHHHHHHHHCCCHHHHHHH
Confidence 355667788888888 99999999999987 8999999999999998883 22 244455556788999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q psy17788 174 LHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPP 253 (365)
Q Consensus 174 ~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~ 253 (365)
|++++...|....+..++.++.+.|++++|..+|+++++.. |.+...+..++......|++++|...|+++++..|.
T Consensus 532 ~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~---P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~ 608 (987)
T PRK09782 532 WQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG---LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS 608 (987)
T ss_pred HHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 99998877777788888999999999999999999999987 778777777777777789999999999999999995
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHH
Q psy17788 254 AVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMK 333 (365)
Q Consensus 254 ~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~ 333 (365)
..++..+|.++.+.|++++|...|++++..+|++..++..++.++...|+.++|+.+|++++.. . |....+|..
T Consensus 609 ---~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~-P~~~~a~~n 682 (987)
T PRK09782 609 ---ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG--L-PDDPALIRQ 682 (987)
T ss_pred ---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--C-CCCHHHHHH
Confidence 5677889999999999999999999999999999999999999999999999999999999984 3 356778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHh
Q psy17788 334 WLKLEEQYGDAEAVENVKKEIEQYVRN 360 (365)
Q Consensus 334 ~l~~e~~~G~~~~a~~v~~kA~~~v~~ 360 (365)
........|+.+.|+..+++|++.-++
T Consensus 683 LA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 683 LAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 888889999999999999999976554
No 25
>KOG0547|consensus
Probab=99.81 E-value=1.6e-17 Score=154.15 Aligned_cols=238 Identities=15% Similarity=0.150 Sum_probs=207.3
Q ss_pred HHHhcCCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCC
Q psy17788 87 DELLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGT 166 (365)
Q Consensus 87 ~~l~~~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~ 166 (365)
--++.|+.-.|...|..++..+|....++|.++..|++..+.++-...|..|....| ++++++...+++....++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-----~n~dvYyHRgQm~flL~q 409 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDP-----ENPDVYYHRGQMRFLLQQ 409 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCC-----CCCchhHhHHHHHHHHHH
Confidence 344556667999999999999999999999999999999999999999999999999 889999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHH
Q psy17788 167 KESLQECLHEAVRCNDET-KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQ 245 (365)
Q Consensus 167 ~~~a~~v~~ral~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ 245 (365)
++.|..-|++++.++|.. -.|.+++-+..+.++++++...|+.+.++| |..+.++.-+|.++..+++++.|...|+
T Consensus 410 ~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF---P~~~Evy~~fAeiLtDqqqFd~A~k~YD 486 (606)
T KOG0547|consen 410 YEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF---PNCPEVYNLFAEILTDQQQFDKAVKQYD 486 (606)
T ss_pred HHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCchHHHHHHHHHhhHHhHHHHHHHHH
Confidence 999999999999999865 478889888899999999999999999999 9999999999999999999999999999
Q ss_pred HHHhcCCCcch----HHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788 246 RGLNNLPPAVH----VTLITRFALA-ENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ 320 (365)
Q Consensus 246 ral~~~p~~~~----~~~~~~~a~~-~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~ 320 (365)
.|+..-|.... +-.++.-|.+ ..-.+++.+|..++.++++.+|+.--++..++.++...|++++|+.+|++++.+
T Consensus 487 ~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 487 KAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred HHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999887321 1122222322 234699999999999999999999999999999999999999999999999864
Q ss_pred CCCCCCcHHHHHHHH
Q psy17788 321 KLPPKKLKPLYMKWL 335 (365)
Q Consensus 321 ~l~~~~~~~~~~~~l 335 (365)
.+.+......|-
T Consensus 567 ---Art~~E~~~a~s 578 (606)
T KOG0547|consen 567 ---ARTESEMVHAYS 578 (606)
T ss_pred ---HHhHHHHHHHHH
Confidence 344444444443
No 26
>KOG1155|consensus
Probab=99.80 E-value=4.8e-17 Score=150.16 Aligned_cols=247 Identities=13% Similarity=0.113 Sum_probs=195.5
Q ss_pred hHHHHHHhhc-CCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy17788 98 PDGFDRMLLG-QPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHE 176 (365)
Q Consensus 98 ~~~fe~~l~~-~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~r 176 (365)
+..+++.+.. .|++..+-.+.+.+.....+++.|..+|+..++..|+|- +..+++...+-+ ..+..+.--+-+.
T Consensus 247 ~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl--~dmdlySN~LYv---~~~~skLs~LA~~ 321 (559)
T KOG1155|consen 247 LQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRL--DDMDLYSNVLYV---KNDKSKLSYLAQN 321 (559)
T ss_pred HHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcc--hhHHHHhHHHHH---HhhhHHHHHHHHH
Confidence 4448888876 799999999999999999999999999999999999873 333443333222 2222333333333
Q ss_pred HHHcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc
Q psy17788 177 AVRCND-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV 255 (365)
Q Consensus 177 al~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~ 255 (365)
...++. .+..-.-.++.|.-.+..++|...|+++++.. |....+|+.+|+=|...++...|...|++|++.+|.+
T Consensus 322 v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN---p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D- 397 (559)
T KOG1155|consen 322 VSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN---PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD- 397 (559)
T ss_pred HHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC---cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh-
Confidence 333332 22344456777888888899999999999988 8889999999999999999999999999999999985
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHH
Q psy17788 256 HVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWL 335 (365)
Q Consensus 256 ~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l 335 (365)
.+.|+.+|+.+.-.+-+.=|.-+|++++..-|++..+|..+|+||.+.+++++|+++|.||+.. .+....++.+.+
T Consensus 398 -yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~---~dte~~~l~~La 473 (559)
T KOG1155|consen 398 -YRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL---GDTEGSALVRLA 473 (559)
T ss_pred -HHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc---cccchHHHHHHH
Confidence 6788888999999999999999999999999999999999999999999999999999999873 334567778888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHH
Q psy17788 336 KLEEQYGDAEAVENVKKEIEQY 357 (365)
Q Consensus 336 ~~e~~~G~~~~a~~v~~kA~~~ 357 (365)
.+++..++..+|...|++-++.
T Consensus 474 kLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 474 KLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred HHHHHHHhHHHHHHHHHHHHHH
Confidence 8888889999888888887774
No 27
>PRK12370 invasion protein regulator; Provisional
Probab=99.80 E-value=2.3e-17 Score=165.08 Aligned_cols=243 Identities=10% Similarity=-0.032 Sum_probs=202.4
Q ss_pred CChHHHHHHhhcCCCCHHHHHHHHHHHHc---------ccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCC
Q psy17788 96 VSPDGFDRMLLGQPNNSELWVKYMAYHLQ---------ATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGT 166 (365)
Q Consensus 96 ~a~~~fe~~l~~~p~~~~~w~~~~~~~~~---------~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~ 166 (365)
+|+..|++++..+|++..+|..++.++.. .+++++|...+++|+...| ++..+|..++.++...|+
T Consensus 279 ~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-----~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 279 QALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-----NNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHccC
Confidence 78899999999999999999988887653 3458999999999999989 778999999999999999
Q ss_pred HHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHH
Q psy17788 167 KESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQ 245 (365)
Q Consensus 167 ~~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ 245 (365)
++.|...|++|++.+|+ ..+|..++.++...|++++|+..|++++... |.++..+..++..++..|++++|...++
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~---P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD---PTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999999999996 4688999999999999999999999999998 8888777777777888999999999999
Q ss_pred HHHhcC-CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q psy17788 246 RGLNNL-PPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPP 324 (365)
Q Consensus 246 ral~~~-p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~ 324 (365)
+++... |.. ...+..+|.++...|++++|+..+.+++...|....++..++..+...|+ .|...+++.+... ..
T Consensus 431 ~~l~~~~p~~--~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~-~~ 505 (553)
T PRK12370 431 ELRSQHLQDN--PILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESE-QR 505 (553)
T ss_pred HHHHhccccC--HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHh-hH
Confidence 999875 554 34556679999999999999999999999999999999999999888884 7888888876621 11
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy17788 325 KKLKPLYMKWLKLEEQYGDAEAVENVKKEI 354 (365)
Q Consensus 325 ~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA 354 (365)
......| .-.|+--+|+.+.+... .++
T Consensus 506 ~~~~~~~--~~~~~~~~g~~~~~~~~-~~~ 532 (553)
T PRK12370 506 IDNNPGL--LPLVLVAHGEAIAEKMW-NKF 532 (553)
T ss_pred hhcCchH--HHHHHHHHhhhHHHHHH-HHh
Confidence 1111222 55566778888877666 444
No 28
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.79 E-value=1.3e-18 Score=159.57 Aligned_cols=216 Identities=21% Similarity=0.232 Sum_probs=120.3
Q ss_pred CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788 92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ 171 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~ 171 (365)
++.+.++..|++++..+|.++.....++.+ ...+++++|..+++++.+..+ ....|..++.++...++++.+.
T Consensus 58 ~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~------~~~~l~~~l~~~~~~~~~~~~~ 130 (280)
T PF13429_consen 58 GDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDG------DPRYLLSALQLYYRLGDYDEAE 130 (280)
T ss_dssp -------------------------------------------------------------------H-HHHTT-HHHHH
T ss_pred cccccccccccccccccccccccccccccc-ccccccccccccccccccccc------ccchhhHHHHHHHHHhHHHHHH
Confidence 566799999999999999999999999998 899999999999999887443 3577888999999999999999
Q ss_pred HHHHHHHHcC---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy17788 172 ECLHEAVRCN---DETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGL 248 (365)
Q Consensus 172 ~v~~ral~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral 248 (365)
.+++++.... ++..+|..++.++.+.|+.++|+.+|+++++.. |.++.++..++.++...|+.++++.++....
T Consensus 131 ~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~---P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~ 207 (280)
T PF13429_consen 131 ELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD---PDDPDARNALAWLLIDMGDYDEAREALKRLL 207 (280)
T ss_dssp HHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 9999987654 355688999999999999999999999999999 9999999999999999999999999998888
Q ss_pred hcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788 249 NNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVT 319 (365)
Q Consensus 249 ~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~ 319 (365)
...|.++. ++..+|.++...|++++|..+|++++..+|+++.++..|++++...|+.++|..++.+++.
T Consensus 208 ~~~~~~~~--~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 208 KAAPDDPD--LWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HH-HTSCC--HCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred HHCcCHHH--HHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 88777654 5577899999999999999999999999999999999999999999999999999999986
No 29
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.77 E-value=2.2e-15 Score=145.55 Aligned_cols=276 Identities=12% Similarity=0.068 Sum_probs=219.1
Q ss_pred HHHHHHHHHHhcCCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHH
Q psy17788 80 ARIRQAEDELLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLN 159 (365)
Q Consensus 80 ~~~~~~e~~l~~~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~ 159 (365)
..+.+...++..++...|...+.++....|+....++..+.+..+.|+++.|..++.++++..|. ....+...++.
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~----~~l~~~~~~a~ 161 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGN----DNILVEIARTR 161 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc----CchHHHHHHHH
Confidence 44555555666677778899999998888888888888888888899999999999999887773 12356666788
Q ss_pred HHHHhCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc-----------------------
Q psy17788 160 LEHLYGTKESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAG----------------------- 215 (365)
Q Consensus 160 l~~~~g~~~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~----------------------- 215 (365)
+....|+++.|...+++.++..|. ..++..++.++...|+++.|.+++.+..+...
T Consensus 162 l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~ 241 (409)
T TIGR00540 162 ILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMA 241 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999988884 45777888888888888888777666664210
Q ss_pred ------------CCC----CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHH--HHHHHHHHHHHcCCHHHHH
Q psy17788 216 ------------QTH----SSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVT--LITRFALAENKFGDASRAQ 277 (365)
Q Consensus 216 ------------~~~----~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~--~~~~~a~~~~~~g~~e~A~ 277 (365)
..| .++.++..++..+...|+++.|...++++++..|++.... .+..++. ...++.+.+.
T Consensus 242 ~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~--l~~~~~~~~~ 319 (409)
T TIGR00540 242 DEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPR--LKPEDNEKLE 319 (409)
T ss_pred hcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhh--cCCCChHHHH
Confidence 012 4788999999999999999999999999999999875321 3333333 3458889999
Q ss_pred HHHHHHHHhCCCCh--hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy17788 278 ALLEHTLTSYPARV--DVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIE 355 (365)
Q Consensus 278 ~~fe~~l~~~P~~~--~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~ 355 (365)
..+++.++.+|+++ .+...||.++.+.|++++|+.+|+++......| .. ..+..++......|+.+.|.+++++++
T Consensus 320 ~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p-~~-~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 320 KLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQL-DA-NDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC-CH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999 889999999999999999999999533322233 23 346688999999999999999999999
Q ss_pred HHHHhhhc
Q psy17788 356 QYVRNSKN 363 (365)
Q Consensus 356 ~~v~~~~~ 363 (365)
.-+-...+
T Consensus 398 ~~~~~~~~ 405 (409)
T TIGR00540 398 GLMLAIQD 405 (409)
T ss_pred HHHhcccc
Confidence 88766544
No 30
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.77 E-value=2.1e-16 Score=134.38 Aligned_cols=202 Identities=12% Similarity=0.110 Sum_probs=174.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q psy17788 151 LNVWTSLLNLEHLYGTKESLQECLHEAVRCNDET-KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCAT 229 (365)
Q Consensus 151 ~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~ 229 (365)
.++-+.++--+...|+...|..-+++||++.|+. .+|..++.+|.+.|..+.|.+-|+++++.. |.+..|..+||.
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~---p~~GdVLNNYG~ 111 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA---PNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC---CCccchhhhhhH
Confidence 3455555666778899999999999999999865 689999999999999999999999999998 999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHH
Q psy17788 230 LLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDL 309 (365)
Q Consensus 230 ~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~ 309 (365)
|++.+|.+++|...|++|+...-...+...+.+.|.|-.+.|+++.|..+|+++|..+|+++.....+++.+.+.|++-.
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 99999999999999999997643333466888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy17788 310 GRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYV 358 (365)
Q Consensus 310 Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v 358 (365)
|+.++++... ... . ........+.+++..||.+.+...-.+-...+
T Consensus 192 Ar~~~~~~~~-~~~-~-~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~f 237 (250)
T COG3063 192 ARLYLERYQQ-RGG-A-QAESLLLGIRIAKRLGDRAAAQRYQAQLQRLF 237 (250)
T ss_pred HHHHHHHHHh-ccc-c-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 9999999987 333 3 34444455899999999998887765544433
No 31
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.77 E-value=4.5e-16 Score=136.89 Aligned_cols=199 Identities=15% Similarity=0.119 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HHHHHHH
Q psy17788 112 SELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-TKVYMNM 190 (365)
Q Consensus 112 ~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~~~l 190 (365)
...++.++..+...|++++|...+++++...| +...+|..++.++...|+++.|...|++++...|. ..++..+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 105 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDP-----DDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNY 105 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 45666666666666666666666666666555 44555566666666666666666666666665543 3455555
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHc
Q psy17788 191 MEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKF 270 (365)
Q Consensus 191 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~ 270 (365)
+.++...|++++|...|.+++... ..+....++..++.++...|++++|...|.+++...|.. ...+..++.++...
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~ 182 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEDP-LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR--PESLLELAELYYLR 182 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC--hHHHHHHHHHHHHc
Confidence 666666666666666666665431 013344555666666666666666666666666655553 33444556666666
Q ss_pred CCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy17788 271 GDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAV 318 (365)
Q Consensus 271 g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral 318 (365)
|++++|..+|++++...|.+...+...+.++...|+.+.|+.+++.+.
T Consensus 183 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 183 GQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 666666666666666555555555555666666666666666555544
No 32
>PRK12370 invasion protein regulator; Provisional
Probab=99.77 E-value=4.9e-16 Score=155.51 Aligned_cols=236 Identities=11% Similarity=-0.010 Sum_probs=188.3
Q ss_pred CCCCHHHHHHHHHHH--H---cccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHh---------CCHHHHHHH
Q psy17788 108 QPNNSELWVKYMAYH--L---QATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLY---------GTKESLQEC 173 (365)
Q Consensus 108 ~p~~~~~w~~~~~~~--~---~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~---------g~~~~a~~v 173 (365)
.|.+...|..|+.-. + ..+++++|+..|++|+...| ++...|..++.++... +.++.|...
T Consensus 252 ~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP-----~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~ 326 (553)
T PRK12370 252 ELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSP-----NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEH 326 (553)
T ss_pred CCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCC-----ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHH
Confidence 556666666555542 2 23457899999999999999 6677787777655422 347899999
Q ss_pred HHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q psy17788 174 LHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLP 252 (365)
Q Consensus 174 ~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p 252 (365)
+++|++.+|+ ..+|..++.++...|++++|...|+++++.. |+++.+|..+|.++...|++++|...+++++...|
T Consensus 327 ~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~---P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P 403 (553)
T PRK12370 327 AIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS---PISADIKYYYGWNLFMAGQLEEALQTINECLKLDP 403 (553)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 9999999985 5688899999999999999999999999998 99999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHH
Q psy17788 253 PAVHVTLITRFALAENKFGDASRAQALLEHTLTSY-PARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLY 331 (365)
Q Consensus 253 ~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~-P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~ 331 (365)
.+... ....+..++..|++++|...+++++..+ |+++.++..++.++...|+.++|+..+.++... ++.....+
T Consensus 404 ~~~~~--~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~---~~~~~~~~ 478 (553)
T PRK12370 404 TRAAA--GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ---EITGLIAV 478 (553)
T ss_pred CChhh--HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc---cchhHHHH
Confidence 96443 2334555677899999999999999875 788899999999999999999999999998762 33344455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy17788 332 MKWLKLEEQYGDAEAVENVKKEIEQYV 358 (365)
Q Consensus 332 ~~~l~~e~~~G~~~~a~~v~~kA~~~v 358 (365)
..........|+ .+..++++.++-.
T Consensus 479 ~~l~~~~~~~g~--~a~~~l~~ll~~~ 503 (553)
T PRK12370 479 NLLYAEYCQNSE--RALPTIREFLESE 503 (553)
T ss_pred HHHHHHHhccHH--HHHHHHHHHHHHh
Confidence 555555555663 6666666655533
No 33
>KOG1155|consensus
Probab=99.77 E-value=2e-16 Score=146.12 Aligned_cols=254 Identities=9% Similarity=0.011 Sum_probs=205.4
Q ss_pred CCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHH
Q psy17788 94 EPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQEC 173 (365)
Q Consensus 94 ~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v 173 (365)
..+++..|+.+++.+|-...-.--|-..+.-.++-.+---+.+.+.....+|.+ .-.-.+|.+...++.++|...
T Consensus 278 fD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~E-----TCCiIaNYYSlr~eHEKAv~Y 352 (559)
T KOG1155|consen 278 FDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPE-----TCCIIANYYSLRSEHEKAVMY 352 (559)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCcc-----ceeeehhHHHHHHhHHHHHHH
Confidence 338999999999999975544334444443333333333445556666676643 344566777788899999999
Q ss_pred HHHHHHcCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q psy17788 174 LHEAVRCNDET-KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLP 252 (365)
Q Consensus 174 ~~ral~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p 252 (365)
|+||++.||.. .+|..++.=|....+...|++.|++|++.. |.+-.+|+.+|+.|.-.+...-|+-+|++|+...|
T Consensus 353 FkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~---p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP 429 (559)
T KOG1155|consen 353 FKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN---PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP 429 (559)
T ss_pred HHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC---chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC
Confidence 99999999976 588888999999999999999999999998 99999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC----CCCCCcH
Q psy17788 253 PAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQK----LPPKKLK 328 (365)
Q Consensus 253 ~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~----l~~~~~~ 328 (365)
++ .++|..+|.|+.+.++.++|+.-|.+++...-.+..++..+++++.+.++..+|..+|++.+... ...+.+.
T Consensus 430 nD--sRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ 507 (559)
T KOG1155|consen 430 ND--SRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETI 507 (559)
T ss_pred Cc--hHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHH
Confidence 96 56778889999999999999999999998887788999999999999999999999999998721 1122222
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy17788 329 PLYMKWLKLEEQYGDAEAVENVKKEIEQY 357 (365)
Q Consensus 329 ~~~~~~l~~e~~~G~~~~a~~v~~kA~~~ 357 (365)
..-.-...++.++++++.|.....+++.+
T Consensus 508 ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 508 KARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 22222667889999999999887777654
No 34
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.76 E-value=8.2e-16 Score=159.44 Aligned_cols=255 Identities=12% Similarity=0.049 Sum_probs=127.8
Q ss_pred CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHH--
Q psy17788 92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKES-- 169 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~-- 169 (365)
++..+|+..+++++..+|++.. |..++.++...|+++.|..++++++...| ++..++..++.+....|..+.
T Consensus 97 g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-----~~~~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 97 GQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-----QTQQYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHCCChHHHH
Confidence 4444666666666666666666 66666666666666666666666666666 445555555554433333222
Q ss_pred --------------------------------------------HHHHHHHHHHc---CCCHH-----HHHHHHHHHHHh
Q psy17788 170 --------------------------------------------LQECLHEAVRC---NDETK-----VYMNMMEIYAAS 197 (365)
Q Consensus 170 --------------------------------------------a~~v~~ral~~---~~~~~-----~~~~l~~~~~~~ 197 (365)
|+..+++++.. +|... ++...+..+...
T Consensus 171 ~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~ 250 (765)
T PRK10049 171 GAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLAR 250 (765)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHh
Confidence 22222233322 11100 000001122344
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc--hHHHHHHHHHHHHHcCCHHH
Q psy17788 198 AQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV--HVTLITRFALAENKFGDASR 275 (365)
Q Consensus 198 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~--~~~~~~~~a~~~~~~g~~e~ 275 (365)
|++++|+..|+++++.....|.+...| ++.+++..|++++|+.+|++++...|... .......++..+...|++++
T Consensus 251 g~~~eA~~~~~~ll~~~~~~P~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~e 328 (765)
T PRK10049 251 DRYKDVISEYQRLKAEGQIIPPWAQRW--VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPG 328 (765)
T ss_pred hhHHHHHHHHHHhhccCCCCCHHHHHH--HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHH
Confidence 566666666666655431112223333 36666666777777777766666554431 12223333444445555555
Q ss_pred HHHHHHHHHHhCCCC---------------hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHh
Q psy17788 276 AQALLEHTLTSYPAR---------------VDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQ 340 (365)
Q Consensus 276 A~~~fe~~l~~~P~~---------------~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~ 340 (365)
|..++++++...|.. ..++..++.++...|+.++|+.+|++++.. . |....+|...+.....
T Consensus 329 A~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~-P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 329 ALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--A-PGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C-CCCHHHHHHHHHHHHh
Confidence 555555555544421 223444555555555555555555555542 1 2234555555555555
Q ss_pred cCCHHHHHHHHHHHHHH
Q psy17788 341 YGDAEAVENVKKEIEQY 357 (365)
Q Consensus 341 ~G~~~~a~~v~~kA~~~ 357 (365)
.|+++.|+.++++|+..
T Consensus 406 ~g~~~~A~~~l~~al~l 422 (765)
T PRK10049 406 RGWPRAAENELKKAEVL 422 (765)
T ss_pred cCCHHHHHHHHHHHHhh
Confidence 55555555555555543
No 35
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.76 E-value=7.4e-18 Score=153.99 Aligned_cols=136 Identities=27% Similarity=0.529 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q psy17788 222 NIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKF-GDASRAQALLEHTLTSYPARVDVWGVYVDM 300 (365)
Q Consensus 222 ~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~-g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~ 300 (365)
-+|+.|+.+..+.+..+.||.+|.+|++..+.. ..+|..+|.+++.+ ++.+.|+.+|+.+++.+|.+.++|..|+++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~--~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCT--YHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS---THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 489999999999999999999999999655443 45788999999995 667779999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q psy17788 301 LVKSDRVDLGRQVIQRAVTQKLPPKK-LKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRN 360 (365)
Q Consensus 301 ~~~~g~~~~Ar~~~eral~~~l~~~~-~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~ 360 (365)
++..|+.+.||.+|+|++. .++... .+.+|.+|++||.++|+.+.+..|.+|+.++++.
T Consensus 80 l~~~~d~~~aR~lfer~i~-~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 80 LIKLNDINNARALFERAIS-SLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCC-TSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHhCcHHHHHHHHHHHHH-hcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999 577777 8899999999999999999999999999999865
No 36
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.76 E-value=9.4e-16 Score=134.87 Aligned_cols=201 Identities=14% Similarity=0.167 Sum_probs=177.7
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Q psy17788 150 RLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCA 228 (365)
Q Consensus 150 ~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a 228 (365)
...++..++..+...|+++.|...|++++...|. ..++..++.++...|++++|...|++++... |.+..++..++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~~~ 106 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN---PNNGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCHHHHHHHH
Confidence 4678888999999999999999999999998875 4678889999999999999999999999988 88999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChH
Q psy17788 229 TLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVD 308 (365)
Q Consensus 229 ~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~ 308 (365)
.++...|++++|...|++++...+.......+..+|.++...|+++.|...|++++..+|.+..+|..++.++...|+++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999864433345677888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy17788 309 LGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQ 356 (365)
Q Consensus 309 ~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~ 356 (365)
+|..+|++++.. .+ .....+...+......|+.+.+..+.+.+..
T Consensus 187 ~A~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQQT--YN-QTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999999984 33 3455566777888889999999888776654
No 37
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.76 E-value=1.6e-15 Score=157.35 Aligned_cols=266 Identities=9% Similarity=-0.012 Sum_probs=206.2
Q ss_pred HHhc-CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHH-----------------------------
Q psy17788 88 ELLQ-NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARR----------------------------- 137 (365)
Q Consensus 88 ~l~~-~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~r----------------------------- 137 (365)
.+.. ++..+|+..|++++..+|++..+++.++.++...+..+.|...+++
T Consensus 125 ~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~ 204 (765)
T PRK10049 125 VYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRS 204 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccC
Confidence 3344 5566999999999999999999999999999877777766655553
Q ss_pred -----------------HHhhccCcccc--chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHH
Q psy17788 138 -----------------ALTVINIRNEE--DRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE--TKVYMNMMEIYAA 196 (365)
Q Consensus 138 -----------------aL~~~p~~~~~--~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~--~~~~~~l~~~~~~ 196 (365)
++...|..... ....+++..+......|+++.|+..|+++++..+. ..+...++.+|..
T Consensus 205 ~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~ 284 (765)
T PRK10049 205 EKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLK 284 (765)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHh
Confidence 33221111000 01112222122234568899999999999987642 2233446889999
Q ss_pred hCCHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-------------cchHHH
Q psy17788 197 SAQIRDLESTVKLLLKKAGQTHSS----VNIYLQCATLLLRLGQKDTARHILQRGLNNLPP-------------AVHVTL 259 (365)
Q Consensus 197 ~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~-------------~~~~~~ 259 (365)
.|++++|+.+|++++... |.+ ...+..++..+...|++++|..++++++...|. +....+
T Consensus 285 ~g~~e~A~~~l~~~l~~~---p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a 361 (765)
T PRK10049 285 LHQPEKAQSILTELFYHP---ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQG 361 (765)
T ss_pred cCCcHHHHHHHHHHhhcC---CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHH
Confidence 999999999999998765 443 456777888889999999999999999988763 223446
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHH
Q psy17788 260 ITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEE 339 (365)
Q Consensus 260 ~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~ 339 (365)
+...+.++...|++++|..+|++++...|.+..+|..++.++...|++++|..++++++.. .| ....++...+....
T Consensus 362 ~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~P-d~~~l~~~~a~~al 438 (765)
T PRK10049 362 QSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EP-RNINLEVEQAWTAL 438 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CC-CChHHHHHHHHHHH
Confidence 6677999999999999999999999999999999999999999999999999999999984 33 45567777777788
Q ss_pred hcCCHHHHHHHHHHHHHHHH
Q psy17788 340 QYGDAEAVENVKKEIEQYVR 359 (365)
Q Consensus 340 ~~G~~~~a~~v~~kA~~~v~ 359 (365)
..|+++.|+.+++++++..+
T Consensus 439 ~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 439 DLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HhCCHHHHHHHHHHHHHhCC
Confidence 89999999999999987644
No 38
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.75 E-value=3e-15 Score=157.58 Aligned_cols=249 Identities=12% Similarity=0.066 Sum_probs=163.6
Q ss_pred CChHHHHHHhhcCC-CCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHH
Q psy17788 96 VSPDGFDRMLLGQP-NNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECL 174 (365)
Q Consensus 96 ~a~~~fe~~l~~~p-~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~ 174 (365)
.+...|+++..... .+...|..++..+.+.|++++|..+|++.....-. -+...|..++..+.+.|+.+.|..+|
T Consensus 490 ~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~----PD~vTYnsLI~a~~k~G~~deA~~lf 565 (1060)
T PLN03218 490 AMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK----PDRVVFNALISACGQSGAVDRAFDVL 565 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 44555555554332 25566666666666666666666666665542110 12456666677677777777777777
Q ss_pred HHHHH----cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy17788 175 HEAVR----CNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNN 250 (365)
Q Consensus 175 ~ral~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~ 250 (365)
.++.. ..|+..+|..++..|.+.|++++|.++|+.+.+... +.++.+|..++..|.+.|++++|..+|.++...
T Consensus 566 ~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi--~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 566 AEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI--KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK 643 (1060)
T ss_pred HHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC--CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 77654 245666677777777777777777777777766531 456677777777777777777777777777654
Q ss_pred --CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCc
Q psy17788 251 --LPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSY-PARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKL 327 (365)
Q Consensus 251 --~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~-P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~ 327 (365)
.|+ ..++..++..+.+.|++++|..+|+.+.+.. +-+...|..++.+|.+.|++++|..+|+.+....+.| .
T Consensus 644 Gv~PD---~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P--d 718 (1060)
T PLN03218 644 GVKPD---EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP--T 718 (1060)
T ss_pred CCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--C
Confidence 233 4566666777777777777777777776643 3346677777777777788888888877776543332 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy17788 328 KPLYMKWLKLEEQYGDAEAVENVKKEIE 355 (365)
Q Consensus 328 ~~~~~~~l~~e~~~G~~~~a~~v~~kA~ 355 (365)
...|...+..+.+.|+.+.|..+++.+.
T Consensus 719 vvtyN~LI~gy~k~G~~eeAlelf~eM~ 746 (1060)
T PLN03218 719 VSTMNALITALCEGNQLPKALEVLSEMK 746 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5667777777777777777777777654
No 39
>KOG1126|consensus
Probab=99.75 E-value=5.8e-17 Score=155.67 Aligned_cols=210 Identities=15% Similarity=0.143 Sum_probs=187.8
Q ss_pred HhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-
Q psy17788 104 MLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND- 182 (365)
Q Consensus 104 ~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~- 182 (365)
++..+|+++..|...|.++--+++.+.|+..|+||+...| .....+.-++.=......++.|...|..||..+|
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp-----~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP-----RFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC-----ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 3456899999999999999999999999999999999888 3334444444444455679999999999999998
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHH
Q psy17788 183 ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITR 262 (365)
Q Consensus 183 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~ 262 (365)
+..+|+.++-+|.++++++.|.-.|++|+... |.+..+...++.++.+.|+.++|+.+|++|+..+|.+++.. +.
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN---P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~--~~ 562 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN---PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCK--YH 562 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCC---ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhH--HH
Confidence 45799999999999999999999999999998 99999999999999999999999999999999999987655 55
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q psy17788 263 FALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPK 325 (365)
Q Consensus 263 ~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~ 325 (365)
.|.+++-.+++++|...+|.+-..-|+...++..+|.++.+.|+.+.|..-|-=|..+ .|+
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l--dpk 623 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL--DPK 623 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC--CCc
Confidence 6999999999999999999999999999999999999999999999999999888854 554
No 40
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.75 E-value=1.1e-14 Score=140.03 Aligned_cols=265 Identities=14% Similarity=0.115 Sum_probs=185.7
Q ss_pred HHHHHHHHhcCCCCCChHHHHHHhhcCCCCHHHHHHH-HHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHH
Q psy17788 82 IRQAEDELLQNGEPVSPDGFDRMLLGQPNNSELWVKY-MAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNL 160 (365)
Q Consensus 82 ~~~~e~~l~~~~~p~a~~~fe~~l~~~p~~~~~w~~~-~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l 160 (365)
+.+....+..++...+.....+.-...+ ++.+.... +....+.|+++.|...+.++.+..|. .........+.+
T Consensus 88 ~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~----~~~~~~l~~a~l 162 (398)
T PRK10747 88 TEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADN----DQLPVEITRVRI 162 (398)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc----chHHHHHHHHHH
Confidence 3334444444555555544444322222 23333333 33336777777777777777775552 112233333566
Q ss_pred HHHhCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc------------------------
Q psy17788 161 EHLYGTKESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAG------------------------ 215 (365)
Q Consensus 161 ~~~~g~~~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~------------------------ 215 (365)
+...|+++.|...++++++..|+ ..++..++.+|.+.|++++|..++.++.+...
T Consensus 163 ~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~ 242 (398)
T PRK10747 163 QLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD 242 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 67777777777777777777764 34556667777777777777755555542110
Q ss_pred ---------------CCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Q psy17788 216 ---------------QTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALL 280 (365)
Q Consensus 216 ---------------~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~f 280 (365)
..++++.++..++..+...|+.++|..++.+++...|+ ..+..-++.+ ..|+++++....
T Consensus 243 ~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~---~~l~~l~~~l--~~~~~~~al~~~ 317 (398)
T PRK10747 243 QGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYD---ERLVLLIPRL--KTNNPEQLEKVL 317 (398)
T ss_pred cCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---HHHHHHHhhc--cCCChHHHHHHH
Confidence 01668889999999999999999999999999985444 3333333443 459999999999
Q ss_pred HHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q psy17788 281 EHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRN 360 (365)
Q Consensus 281 e~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~ 360 (365)
++.++.+|+++.++..++.++...|+++.|+..|++++.. .|. ...+..+...+...|+.+.+..++.+++..+.+
T Consensus 318 e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~--~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~ 393 (398)
T PRK10747 318 RQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPD--AYDYAWLADALDRLHKPEEAAAMRRDGLMLTLQ 393 (398)
T ss_pred HHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcc
Confidence 9999999999999999999999999999999999999984 333 344667888889999999999999999987754
No 41
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.74 E-value=2.1e-15 Score=139.32 Aligned_cols=228 Identities=11% Similarity=0.029 Sum_probs=173.9
Q ss_pred hHHHHHHhhcCC----CCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHH
Q psy17788 98 PDGFDRMLLGQP----NNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQEC 173 (365)
Q Consensus 98 ~~~fe~~l~~~p----~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v 173 (365)
+..|.++|...| +....|+..+..+...|+.+.|+..|+++++..| +...+|..++.++...|+++.|...
T Consensus 46 i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-----~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 46 LARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-----DMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-----CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 344666775333 3467899999999999999999999999999888 7789999999999999999999999
Q ss_pred HHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q psy17788 174 LHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLP 252 (365)
Q Consensus 174 ~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p 252 (365)
|.++++.+|+ ..+|..++.++...|++++|.+.|+++++.. |.++... .+..+....+++++|...|.+++...+
T Consensus 121 ~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~---P~~~~~~-~~~~l~~~~~~~~~A~~~l~~~~~~~~ 196 (296)
T PRK11189 121 FDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD---PNDPYRA-LWLYLAESKLDPKQAKENLKQRYEKLD 196 (296)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHH-HHHHHHHccCCHHHHHHHHHHHHhhCC
Confidence 9999999986 4688999999999999999999999999998 8777321 122234557889999999988776544
Q ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------HhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q psy17788 253 PAVHVTLITRFALAENKFGDASRAQALLEHTL-------TSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPK 325 (365)
Q Consensus 253 ~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l-------~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~ 325 (365)
.. .+. .+......|+...+ ..++.+. ...|+..++|..+|.++...|++++|+..|++|+.. .|+
T Consensus 197 ~~--~~~---~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~--~~~ 268 (296)
T PRK11189 197 KE--QWG---WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN--NVY 268 (296)
T ss_pred cc--ccH---HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCc
Confidence 32 121 24555566766544 2444443 556677789999999999999999999999999984 333
Q ss_pred CcHHHHHHHHHHHHhcC
Q psy17788 326 KLKPLYMKWLKLEEQYG 342 (365)
Q Consensus 326 ~~~~~~~~~l~~e~~~G 342 (365)
.....-...++.++..+
T Consensus 269 ~~~e~~~~~~e~~~~~~ 285 (296)
T PRK11189 269 NFVEHRYALLELALLGQ 285 (296)
T ss_pred hHHHHHHHHHHHHHHHh
Confidence 33333333444444433
No 42
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.73 E-value=8.3e-15 Score=154.30 Aligned_cols=237 Identities=12% Similarity=0.147 Sum_probs=160.2
Q ss_pred CHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCHHHHH
Q psy17788 111 NSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRC--NDETKVYM 188 (365)
Q Consensus 111 ~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~--~~~~~~~~ 188 (365)
+...|..++..+.+.|+++.|+.+|+++.+.... -...+|..++..+.+.|..+.|..+|+++... .|+..+|.
T Consensus 436 d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~----pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTyn 511 (1060)
T PLN03218 436 TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLK----ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFG 511 (1060)
T ss_pred CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 4566777777777778888888888777663221 23466777777777777777777777777654 35667777
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCCcchHHHHHHHHHHH
Q psy17788 189 NMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNN-LPPAVHVTLITRFALAE 267 (365)
Q Consensus 189 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~-~p~~~~~~~~~~~a~~~ 267 (365)
.++..|.+.|++++|.++|+.+..... ..+..+|..++..+.+.|++++|..+|.++... .+-.++..++..+...+
T Consensus 512 aLI~gy~k~G~~eeAl~lf~~M~~~Gv--~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay 589 (1060)
T PLN03218 512 ALIDGCARAGQVAKAFGAYGIMRSKNV--KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKAC 589 (1060)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 777777777777777777777765421 456677777777777777777777777777642 12222355666667777
Q ss_pred HHcCCHHHHHHHHHHHHHhC-CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHH
Q psy17788 268 NKFGDASRAQALLEHTLTSY-PARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEA 346 (365)
Q Consensus 268 ~~~g~~e~A~~~fe~~l~~~-P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~ 346 (365)
.+.|++++|..+|+.+.+.. +.+...|..++..+.+.|++++|..+|+++....+.| ....|...+....+.|+.+.
T Consensus 590 ~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P--D~~TynsLI~a~~k~G~~ee 667 (1060)
T PLN03218 590 ANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP--DEVFFSALVDVAGHAGDLDK 667 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhCCCHHH
Confidence 77777777777777776654 3445667777777777777777777777776644433 24566666666666666666
Q ss_pred HHHHHHHHH
Q psy17788 347 VENVKKEIE 355 (365)
Q Consensus 347 a~~v~~kA~ 355 (365)
|..++..+.
T Consensus 668 A~~l~~eM~ 676 (1060)
T PLN03218 668 AFEILQDAR 676 (1060)
T ss_pred HHHHHHHHH
Confidence 666666554
No 43
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.73 E-value=1e-14 Score=129.53 Aligned_cols=259 Identities=20% Similarity=0.183 Sum_probs=206.8
Q ss_pred HHHHhcCCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhC
Q psy17788 86 EDELLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYG 165 (365)
Q Consensus 86 e~~l~~~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g 165 (365)
...|++++...|++.|-.++..+|.+..+.+.++..+.+.|++|+|+.+.+..+. .|.-....+.-+...++.-+...|
T Consensus 43 lNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym~aG 121 (389)
T COG2956 43 LNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYMAAG 121 (389)
T ss_pred HHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHHhh
Confidence 3456666666999999999999999999999999999999999999999988777 453333345667778888889999
Q ss_pred CHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHHcCChHHHH
Q psy17788 166 TKESLQECLHEAVRCND-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSS---VNIYLQCATLLLRLGQKDTAR 241 (365)
Q Consensus 166 ~~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~a~~~~~~g~~~~A~ 241 (365)
-++.|..+|...+.... -..+...++.+|....++++|+++-++.++..+. +.+ ...+..++.-+....+.+.|+
T Consensus 122 l~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q-~~~~eIAqfyCELAq~~~~~~~~d~A~ 200 (389)
T COG2956 122 LLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ-TYRVEIAQFYCELAQQALASSDVDRAR 200 (389)
T ss_pred hhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc-cchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence 99999999999876433 3458899999999999999999999999987521 111 345667777777788999999
Q ss_pred HHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788 242 HILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPAR-VDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ 320 (365)
Q Consensus 242 ~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~-~~~w~~~~~~~~~~g~~~~Ar~~~eral~~ 320 (365)
.++.+|++.+|++..+. +.+|.++...|++..|...++++++.+|.. +.+.-.+..+|...|++.+....+.+++..
T Consensus 201 ~~l~kAlqa~~~cvRAs--i~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 201 ELLKKALQADKKCVRAS--IILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHHhhCccceehh--hhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 99999999999975554 555999999999999999999999999987 467788889999999999999999999983
Q ss_pred CCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q psy17788 321 KLPPKKLKPLYMKWLKLEEQYGDAEAVENVK 351 (365)
Q Consensus 321 ~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~ 351 (365)
. +........+--.+...|..+....+.
T Consensus 279 -~--~g~~~~l~l~~lie~~~G~~~Aq~~l~ 306 (389)
T COG2956 279 -N--TGADAELMLADLIELQEGIDAAQAYLT 306 (389)
T ss_pred -c--CCccHHHHHHHHHHHhhChHHHHHHHH
Confidence 2 222333344444455566555444333
No 44
>KOG1125|consensus
Probab=99.71 E-value=5.9e-16 Score=146.69 Aligned_cols=256 Identities=13% Similarity=0.081 Sum_probs=212.1
Q ss_pred HHHhc-CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhC
Q psy17788 87 DELLQ-NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYG 165 (365)
Q Consensus 87 ~~l~~-~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g 165 (365)
..+++ |..|+|+-.||.+++.+|.+..+|..++..+...++-..|+..++|||+..| ++..+..+++--+...|
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-----~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDP-----TNLEALMALAVSYTNEG 367 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-----ccHHHHHHHHHHHhhhh
Confidence 34666 7788999999999999999999999999999999999999999999999999 88999999999999889
Q ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHH---------HHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCC
Q psy17788 166 TKESLQECLHEAVRCNDETKVYMNMMEIY---------AASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQ 236 (365)
Q Consensus 166 ~~~~a~~v~~ral~~~~~~~~~~~l~~~~---------~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~ 236 (365)
....|.+.+..-|...|... |+..+..- .....+....++|-.+....+. ..++++...+|-+|.-.|+
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~-~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~-~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYV-HLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPT-KIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred hHHHHHHHHHHHHHhCccch-hccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCC-CCChhHHhhhHHHHhcchH
Confidence 89999999999988775322 22111110 1122345667777777776611 2789999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q psy17788 237 KDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQR 316 (365)
Q Consensus 237 ~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~er 316 (365)
|++|..+|+-||+..|++ ..+|.++|..+..-.+.++|+..|.++|++.|..+.+|..+|-.++..|.+.+|...|=.
T Consensus 446 fdraiDcf~~AL~v~Pnd--~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVKPND--YLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHHHhcCCch--HHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 999999999999999995 678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCC---CCC----cHHHHHHHHHHHHhcCCHHHHHHHH
Q psy17788 317 AVTQKLP---PKK----LKPLYMKWLKLEEQYGDAEAVENVK 351 (365)
Q Consensus 317 al~~~l~---~~~----~~~~~~~~l~~e~~~G~~~~a~~v~ 351 (365)
||.+.-. +.+ ...||...-.+-...|..+.+..++
T Consensus 524 AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 524 ALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 9984211 111 2469988887778888887555443
No 45
>KOG2002|consensus
Probab=99.71 E-value=5.6e-15 Score=147.01 Aligned_cols=258 Identities=12% Similarity=0.088 Sum_probs=191.4
Q ss_pred CChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy17788 96 VSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLH 175 (365)
Q Consensus 96 ~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ 175 (365)
.|...|..++..+|++....+.-+.+....+++-.|..+|.++|.+.|... .++.+....+...+|..+.|+..|+
T Consensus 148 ~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~----aD~rIgig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 148 DADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACK----ADVRIGIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccC----CCccchhhhHHHhccchhhHHHHHH
Confidence 566788889999999999999999999999999999999999998777543 2333333344445566777777777
Q ss_pred HHHHcCC--------------------------------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCC
Q psy17788 176 EAVRCND--------------------------------------ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQT 217 (365)
Q Consensus 176 ral~~~~--------------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 217 (365)
||++++| ++.+...|+..|.-.|+++.+..+..-+++.--..
T Consensus 224 ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~ 303 (1018)
T KOG2002|consen 224 RALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENK 303 (1018)
T ss_pred HHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhh
Confidence 7777766 34456666777777788888888887777653100
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHH
Q psy17788 218 HSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVY 297 (365)
Q Consensus 218 ~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~ 297 (365)
+.-...++.+|..|..+|++++|..+|..+++..|+. ++-.++.+|+++.+.|+.+.+...|+++++.+|++++....+
T Consensus 304 ~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~-~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iL 382 (1018)
T KOG2002|consen 304 SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN-FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKIL 382 (1018)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC-ccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 1223447888888888888888888888888888776 455667778888888888888888888888888888888888
Q ss_pred HHHHHhcC----ChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhh
Q psy17788 298 VDMLVKSD----RVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNSK 362 (365)
Q Consensus 298 ~~~~~~~g----~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~~ 362 (365)
|.+|...+ ..+.|..+..+++.. .+.....|.....+.. .+|.-....+|.+|+..+++.+
T Consensus 383 G~Lya~~~~~~~~~d~a~~~l~K~~~~---~~~d~~a~l~laql~e-~~d~~~sL~~~~~A~d~L~~~~ 447 (1018)
T KOG2002|consen 383 GCLYAHSAKKQEKRDKASNVLGKVLEQ---TPVDSEAWLELAQLLE-QTDPWASLDAYGNALDILESKG 447 (1018)
T ss_pred HhHHHhhhhhhHHHHHHHHHHHHHHhc---ccccHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHcC
Confidence 88887664 567888888888873 3445667777777765 4566666888888887776643
No 46
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.70 E-value=7.9e-15 Score=124.84 Aligned_cols=192 Identities=15% Similarity=0.087 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCH-HHHHHHH
Q psy17788 113 ELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDET-KVYMNMM 191 (365)
Q Consensus 113 ~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~-~~~~~l~ 191 (365)
.+.++++.-|++.|++..|+.-+++||++.| .....|..++.++...|..+.|.+.|++|+...|.. .|+++++
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DP-----s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG 110 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDP-----SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYG 110 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-----ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhh
Confidence 4455555555556666666666666665555 445555555555555555666666666665555532 4555555
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcC
Q psy17788 192 EIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFG 271 (365)
Q Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g 271 (365)
-+++..|++++|...|++++.. +.-+..+.+|.+++-+-++.|+++.|+.+|+|+|..+|+.+. ....++..+++.|
T Consensus 111 ~FLC~qg~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~--~~l~~a~~~~~~~ 187 (250)
T COG3063 111 AFLCAQGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPP--ALLELARLHYKAG 187 (250)
T ss_pred HHHHhCCChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCCh--HHHHHHHHHHhcc
Confidence 5556666666666666655543 111334455566666666666666666666666666555433 2344455556666
Q ss_pred CHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHH
Q psy17788 272 DASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQ 312 (365)
Q Consensus 272 ~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~ 312 (365)
++-.|+.++++.....+-..+....-+.+....|+.+.+-.
T Consensus 188 ~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~ 228 (250)
T COG3063 188 DYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQR 228 (250)
T ss_pred cchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHH
Confidence 66666666665555555444444444555555555554443
No 47
>KOG1173|consensus
Probab=99.69 E-value=3e-15 Score=141.44 Aligned_cols=230 Identities=14% Similarity=0.106 Sum_probs=170.2
Q ss_pred HHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Q psy17788 103 RMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND 182 (365)
Q Consensus 103 ~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~ 182 (365)
+++...|+++-.|+..|-+|+..|.+.+||.+|.+|....| .....|++++..+...|..++|+..|-+|-+.-|
T Consensus 303 ~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~-----~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~ 377 (611)
T KOG1173|consen 303 KLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDP-----TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMP 377 (611)
T ss_pred HHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCc-----cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhcc
Confidence 34455677778888888888888888888888888887777 6677888888887777888888888888877766
Q ss_pred CHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC----cc-h
Q psy17788 183 ETK-VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPP----AV-H 256 (365)
Q Consensus 183 ~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~----~~-~ 256 (365)
... -.+.++-=|.+++++.-|.+.|..++..+ |.+|-+...+|-+.+..+.+.+|..+|+.++...+. .. =
T Consensus 378 G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~---P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w 454 (611)
T KOG1173|consen 378 GCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA---PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFW 454 (611)
T ss_pred CCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC---CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccch
Confidence 432 23344555667788888888888888887 888888888888888888888888888888743221 11 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--CcHHHHHHH
Q psy17788 257 VTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPK--KLKPLYMKW 334 (365)
Q Consensus 257 ~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~--~~~~~~~~~ 334 (365)
..++..+|..+.+++.++.|+..|+++|...|++++.+...|-++...|+++.|...|.+++.+ .|. ....+....
T Consensus 455 ~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 455 EPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLA 532 (611)
T ss_pred hHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHH
Confidence 3356778888888888888888888888888888888888888888888888888888888875 333 233455555
Q ss_pred HHH-HHhcC
Q psy17788 335 LKL-EEQYG 342 (365)
Q Consensus 335 l~~-e~~~G 342 (365)
+.- +...|
T Consensus 533 ie~~~~~~~ 541 (611)
T KOG1173|consen 533 IEDSECKSG 541 (611)
T ss_pred HHhhhhhcc
Confidence 554 33344
No 48
>KOG0547|consensus
Probab=99.68 E-value=1.2e-14 Score=135.22 Aligned_cols=237 Identities=11% Similarity=0.099 Sum_probs=208.8
Q ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CHHHHHHH
Q psy17788 112 SELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND-ETKVYMNM 190 (365)
Q Consensus 112 ~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~-~~~~~~~l 190 (365)
..++...+-|+.-.|+.-.|...|..++...| ...++++.++.++....+.+.....|..|..++| ++.+|++-
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~-----~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHR 400 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDP-----AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHR 400 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCc-----ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhH
Confidence 45667778888899999999999999999888 5567788888888888999999999999999998 56799999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHc
Q psy17788 191 MEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKF 270 (365)
Q Consensus 191 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~ 270 (365)
++++.-.+++++|..=|++++... |.+...++.++-+++++++++++...|+.++..+|+. ..++.-||.++...
T Consensus 401 gQm~flL~q~e~A~aDF~Kai~L~---pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~--~Evy~~fAeiLtDq 475 (606)
T KOG0547|consen 401 GQMRFLLQQYEEAIADFQKAISLD---PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNC--PEVYNLFAEILTDQ 475 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcC---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--chHHHHHHHHHhhH
Confidence 999999999999999999999998 9999999999999999999999999999999999996 55778889999999
Q ss_pred CCHHHHHHHHHHHHHhCCC------ChhHHHHHHHHHH-hcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCC
Q psy17788 271 GDASRAQALLEHTLTSYPA------RVDVWGVYVDMLV-KSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGD 343 (365)
Q Consensus 271 g~~e~A~~~fe~~l~~~P~------~~~~w~~~~~~~~-~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~ 343 (365)
++++.|...|..++..-|. +...+..-+-+.. =.+++.+|.+++.+|+++ +++....+...+.|+.+.|+
T Consensus 476 qqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~---Dpkce~A~~tlaq~~lQ~~~ 552 (606)
T KOG0547|consen 476 QQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIEL---DPKCEQAYETLAQFELQRGK 552 (606)
T ss_pred HhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHcc---CchHHHHHHHHHHHHHHHhh
Confidence 9999999999999999998 4443333333322 238999999999999984 46688999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy17788 344 AEAVENVKKEIEQYVRNS 361 (365)
Q Consensus 344 ~~~a~~v~~kA~~~v~~~ 361 (365)
.+.|..+|++++.+..+.
T Consensus 553 i~eAielFEksa~lArt~ 570 (606)
T KOG0547|consen 553 IDEAIELFEKSAQLARTE 570 (606)
T ss_pred HHHHHHHHHHHHHHHHhH
Confidence 999999999999987664
No 49
>KOG2076|consensus
Probab=99.68 E-value=3.3e-14 Score=140.74 Aligned_cols=165 Identities=15% Similarity=0.219 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHH
Q psy17788 77 AEEARIRQAEDELLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTS 156 (365)
Q Consensus 77 ~~e~~~~~~e~~l~~~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~ 156 (365)
+-...+.++......|+..+|..++..++..+|.++..|..++.+|.+.|+++++...+--|--..| ...+.|..
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-----~d~e~W~~ 212 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-----KDYELWKR 212 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-----CChHHHHH
Confidence 3445666666677778889999999999999999999999999999999999999998887777777 45699999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCC-c----HHHHHHHHHH
Q psy17788 157 LLNLEHLYGTKESLQECLHEAVRCNDET-KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHS-S----VNIYLQCATL 230 (365)
Q Consensus 157 ~~~l~~~~g~~~~a~~v~~ral~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~----~~~~~~~a~~ 230 (365)
++.+....|++..|+-+|.+||+.+|+. ...+..+.+|.++|+...|...|.+++... |+ + ......+++.
T Consensus 213 ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~---p~~d~er~~d~i~~~~~~ 289 (895)
T KOG2076|consen 213 LADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD---PPVDIERIEDLIRRVAHY 289 (895)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC---CchhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999865 566888999999999999999999999876 41 1 2233344555
Q ss_pred HHHcCChHHHHHHHHHHHh
Q psy17788 231 LLRLGQKDTARHILQRGLN 249 (365)
Q Consensus 231 ~~~~g~~~~A~~~l~ral~ 249 (365)
+...++-+.|...+..++.
T Consensus 290 ~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 290 FITHNERERAAKALEGALS 308 (895)
T ss_pred HHHhhHHHHHHHHHHHHHh
Confidence 5555555666666555554
No 50
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.68 E-value=1.6e-14 Score=148.89 Aligned_cols=247 Identities=10% Similarity=0.043 Sum_probs=187.7
Q ss_pred CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788 92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ 171 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~ 171 (365)
++..+|...|+++ .+.+...|..++..+.+.|++++|..+|++.....-. -+...+..++..+...|..+.|.
T Consensus 273 g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~----pd~~t~~~ll~a~~~~g~~~~a~ 345 (697)
T PLN03081 273 GDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS----IDQFTFSIMIRIFSRLALLEHAK 345 (697)
T ss_pred CCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHhccchHHHH
Confidence 4444677777766 3457788999999999999999999999888663110 12356777778888888888888
Q ss_pred HHHHHHHHcC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy17788 172 ECLHEAVRCN--DETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLN 249 (365)
Q Consensus 172 ~v~~ral~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~ 249 (365)
.++..+++.. |+..++..+++.|.+.|++++|.++|+++.+ .+..+|..++..|.+.|+.++|..+|++++.
T Consensus 346 ~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~------~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~ 419 (697)
T PLN03081 346 QAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR------KNLISWNALIAGYGNHGRGTKAVEMFERMIA 419 (697)
T ss_pred HHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC------CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888887764 4556788888888888888888888888753 3667888888889999999999999988876
Q ss_pred cCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCc
Q psy17788 250 NLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPAR--VDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKL 327 (365)
Q Consensus 250 ~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~--~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~ 327 (365)
.... ++..++..+...+.+.|..++|..+|+.+.+.++-. ...|..+++++.+.|++++|.++|+++- ....
T Consensus 420 ~g~~-Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~-----~~p~ 493 (697)
T PLN03081 420 EGVA-PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP-----FKPT 493 (697)
T ss_pred hCCC-CCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC-----CCCC
Confidence 5322 225566777777888888999999998887654433 4568888888888888888888887652 2224
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy17788 328 KPLYMKWLKLEEQYGDAEAVENVKKEIEQY 357 (365)
Q Consensus 328 ~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~ 357 (365)
..+|...+.....+|+.+.++.+.++.++.
T Consensus 494 ~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~ 523 (697)
T PLN03081 494 VNMWAALLTACRIHKNLELGRLAAEKLYGM 523 (697)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHhCC
Confidence 567888888888888888888887776543
No 51
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.67 E-value=2.7e-14 Score=147.17 Aligned_cols=259 Identities=12% Similarity=0.093 Sum_probs=214.7
Q ss_pred HHHHHhc-CCCCCChHHHHHHhhcC-CCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHH
Q psy17788 85 AEDELLQ-NGEPVSPDGFDRMLLGQ-PNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEH 162 (365)
Q Consensus 85 ~e~~l~~-~~~p~a~~~fe~~l~~~-p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~ 162 (365)
+-..+.. ++..+|...|+++.... .-+...+..++..+.+.|.++.|..++..+++.... ....++..+++++.
T Consensus 296 li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~----~d~~~~~~Li~~y~ 371 (697)
T PLN03081 296 MLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFP----LDIVANTALVDLYS 371 (697)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCC----CCeeehHHHHHHHH
Confidence 3344555 55558999999997653 335678999999999999999999999999985321 34578899999999
Q ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHH
Q psy17788 163 LYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARH 242 (365)
Q Consensus 163 ~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 242 (365)
+.|+.+.|..+|++... |+...|..++..|.+.|+.++|.++|++|.+.. ..++..++..+...+...|..++|..
T Consensus 372 k~G~~~~A~~vf~~m~~--~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g--~~Pd~~T~~~ll~a~~~~g~~~~a~~ 447 (697)
T PLN03081 372 KWGRMEDARNVFDRMPR--KNLISWNALIAGYGNHGRGTKAVEMFERMIAEG--VAPNHVTFLAVLSACRYSGLSEQGWE 447 (697)
T ss_pred HCCCHHHHHHHHHhCCC--CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHhcCCcHHHHHH
Confidence 99999999999999853 677899999999999999999999999998763 26678889999999999999999999
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q psy17788 243 ILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKL 322 (365)
Q Consensus 243 ~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l 322 (365)
+|+.+.+..+-.+.+..|..++.++.+.|++++|..+|+++ ...| +..+|..++..+...|+++.|+.++++++..
T Consensus 448 ~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~-- 523 (697)
T PLN03081 448 IFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGM-- 523 (697)
T ss_pred HHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--
Confidence 99999875444444667788899999999999999999875 2233 3567999999999999999999999999863
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy17788 323 PPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQ 356 (365)
Q Consensus 323 ~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~ 356 (365)
.|. ....|...+..+...|..+.|..+++...+
T Consensus 524 ~p~-~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 524 GPE-KLNNYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred CCC-CCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 333 345677888889999999999999887653
No 52
>KOG1173|consensus
Probab=99.65 E-value=5.4e-14 Score=133.04 Aligned_cols=253 Identities=8% Similarity=0.028 Sum_probs=219.9
Q ss_pred CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788 92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ 171 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~ 171 (365)
.+..+....++.++..+|.++....-.+.++...|+..+-..+--+.+...| .+.--|++.+-.+...|.++.|+
T Consensus 258 c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP-----~~a~sW~aVg~YYl~i~k~seAR 332 (611)
T KOG1173|consen 258 CRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYP-----SKALSWFAVGCYYLMIGKYSEAR 332 (611)
T ss_pred ChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCC-----CCCcchhhHHHHHHHhcCcHHHH
Confidence 5555777888999999999999888888899899988888888888888899 66777999999999999999999
Q ss_pred HHHHHHHHcCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy17788 172 ECLHEAVRCNDET-KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNN 250 (365)
Q Consensus 172 ~v~~ral~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~ 250 (365)
..|.+|...+|.. ..|+.++..|.-.|..++|...|.+|-+.+ +....-.+-+|.=|.+.+++.-|...|..|+.+
T Consensus 333 ry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~---~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai 409 (611)
T KOG1173|consen 333 RYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM---PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI 409 (611)
T ss_pred HHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc---cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 9999999999865 799999999999999999999999999999 777666677778888899999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCC---hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q psy17788 251 LPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSY----PAR---VDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLP 323 (365)
Q Consensus 251 ~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~----P~~---~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~ 323 (365)
.|.++. ++..+|.+.+..+.+.+|..+|+.++..- +.. ..+|+.+|..+.+++.+++|+..|++++.+
T Consensus 410 ~P~Dpl--v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--- 484 (611)
T KOG1173|consen 410 APSDPL--VLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--- 484 (611)
T ss_pred CCCcch--hhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc---
Confidence 999755 55777999999999999999999999432 222 245899999999999999999999999974
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy17788 324 PKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQY 357 (365)
Q Consensus 324 ~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~ 357 (365)
.++........+-.+...|+.+.|...+.+|+-.
T Consensus 485 ~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 485 SPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 3456777777777888899999999999998753
No 53
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.63 E-value=1.4e-13 Score=132.98 Aligned_cols=219 Identities=11% Similarity=0.063 Sum_probs=161.0
Q ss_pred CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchH-----HHHHHHHHHHHHhCC
Q psy17788 92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRL-----NVWTSLLNLEHLYGT 166 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~-----~~w~~~~~l~~~~g~ 166 (365)
++...|...+++++..+|+++.++..++..+++.|+++.|...+.+.++.....+ ... .+|..++. .+.
T Consensus 167 ~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~--~~~~~l~~~a~~~~l~----~~~ 240 (409)
T TIGR00540 167 NELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDD--EEFADLEQKAEIGLLD----EAM 240 (409)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHHHHH----HHH
Confidence 4444667777777777777777777777777777777777777777776422110 111 22222221 122
Q ss_pred HHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHH--HHHHHHHHHcCChHH
Q psy17788 167 KESLQECLHEAVRCND-----ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIY--LQCATLLLRLGQKDT 239 (365)
Q Consensus 167 ~~~a~~v~~ral~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~a~~~~~~g~~~~ 239 (365)
.+.....+..+....| +..++..++..+...|++++|.+++++++++. |++.... .......+..++...
T Consensus 241 ~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~---pd~~~~~~~~l~~~~~l~~~~~~~ 317 (409)
T TIGR00540 241 ADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL---GDDRAISLPLCLPIPRLKPEDNEK 317 (409)
T ss_pred HhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC---CCcccchhHHHHHhhhcCCCChHH
Confidence 2333445555555555 56788889999999999999999999999998 7776532 111222233578899
Q ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q psy17788 240 ARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLE--HTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRA 317 (365)
Q Consensus 240 A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe--~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~era 317 (365)
++..++++++..|.++...++..+|.++++.|++++|+.+|+ .++...|+... +..++.++.+.|+.++|+.+|+++
T Consensus 318 ~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 318 LEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999998744677788999999999999999999 68888998766 559999999999999999999999
Q ss_pred HhC
Q psy17788 318 VTQ 320 (365)
Q Consensus 318 l~~ 320 (365)
+.+
T Consensus 397 l~~ 399 (409)
T TIGR00540 397 LGL 399 (409)
T ss_pred HHH
Confidence 874
No 54
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.61 E-value=5.9e-13 Score=122.95 Aligned_cols=221 Identities=13% Similarity=0.107 Sum_probs=172.5
Q ss_pred ccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHH
Q psy17788 125 ATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDL 203 (365)
Q Consensus 125 ~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A 203 (365)
.+..+.++..+.++|...|... ......|+..+.++...|..+.|+..|.++++.+|+ ..+|..++.++...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~-~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTD-EERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCc-HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 3466788888888886444221 244678999999999999999999999999999985 57899999999999999999
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17788 204 ESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHT 283 (365)
Q Consensus 204 ~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~ 283 (365)
...|+++++.. |.+..+|..+|.++...|++++|...|++++...|.+....+|. .+....+++++|...|.++
T Consensus 118 ~~~~~~Al~l~---P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~---~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 118 YEAFDSVLELD---PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWL---YLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH---HHHHccCCHHHHHHHHHHH
Confidence 99999999998 99999999999999999999999999999999999875322322 2334578999999999887
Q ss_pred HHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-----CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy17788 284 LTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLP-----PKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQY 357 (365)
Q Consensus 284 l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~-----~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~ 357 (365)
+...+. +.|. ++......|+...+ ..++.+.. .+. .+.....|...+......|+.+.|...|++|++.
T Consensus 192 ~~~~~~--~~~~-~~~~~~~lg~~~~~-~~~~~~~~-~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 192 YEKLDK--EQWG-WNIVEFYLGKISEE-TLMERLKA-GATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HhhCCc--cccH-HHHHHHHccCCCHH-HHHHHHHh-cCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 765433 3343 34444456666554 35555553 111 1123457888888889999999999999999864
No 55
>KOG1914|consensus
Probab=99.61 E-value=5.1e-13 Score=125.85 Aligned_cols=238 Identities=16% Similarity=0.223 Sum_probs=191.1
Q ss_pred HHHHHHHHHHHccc------CHH--HHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCC--------------HHHH
Q psy17788 113 ELWVKYMAYHLQAT------EIE--KARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGT--------------KESL 170 (365)
Q Consensus 113 ~~w~~~~~~~~~~~------~~e--~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~--------------~~~a 170 (365)
.+|..++.+....+ ..- ...-+|+++|...++ ...+|+.+.......++ .+++
T Consensus 238 ~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~-----~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~ 312 (656)
T KOG1914|consen 238 ELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGY-----HPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEA 312 (656)
T ss_pred HHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHH
Confidence 78999999985443 222 233468999998884 47899988876554444 6789
Q ss_pred HHHHHHHHHcCC--CHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHH
Q psy17788 171 QECLHEAVRCND--ETKVYMNMMEIYAASA---QIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQ 245 (365)
Q Consensus 171 ~~v~~ral~~~~--~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ 245 (365)
..+|++++..-. +..+|+.+++.....- +.+..-..|++++.... .+-.-+|+.+..+-.+......||.+|.
T Consensus 313 ~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~--~~~tLv~~~~mn~irR~eGlkaaR~iF~ 390 (656)
T KOG1914|consen 313 ASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIED--IDLTLVYCQYMNFIRRAEGLKAARKIFK 390 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhc--cCCceehhHHHHHHHHhhhHHHHHHHHH
Confidence 999999987543 3456777777655443 38888999999999872 2334579999999999999999999999
Q ss_pred HHHhcCCCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q psy17788 246 RGLNNLPPAVHVTLITRFALAENK-FGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPP 324 (365)
Q Consensus 246 ral~~~p~~~~~~~~~~~a~~~~~-~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~ 324 (365)
+|-+..-...|+ ++..|.+++. .++.+-|..+|+-.|+.+|+.+..-..|+++++..|+-..+|.+|+|++...+++
T Consensus 391 kaR~~~r~~hhV--fVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~ 468 (656)
T KOG1914|consen 391 KAREDKRTRHHV--FVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSA 468 (656)
T ss_pred HHhhccCCcchh--hHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCCh
Confidence 998765444354 4544766665 5899999999999999999999999999999999999999999999999966788
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q psy17788 325 KKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVR 359 (365)
Q Consensus 325 ~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~ 359 (365)
.+.+.+|.++++||-+.||...+..+-+|-...++
T Consensus 469 ~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 469 DKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred hhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 89999999999999999999999998887766555
No 56
>KOG1129|consensus
Probab=99.60 E-value=1.1e-13 Score=123.24 Aligned_cols=229 Identities=15% Similarity=0.076 Sum_probs=203.1
Q ss_pred HHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHH-HHHHHHHH
Q psy17788 116 VKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKV-YMNMMEIY 194 (365)
Q Consensus 116 ~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~-~~~l~~~~ 194 (365)
.+++.+|+..|-+.+|...++.+|+..|. .+.+.-+...+.+.++...|..+|...+...|.... ....+.++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~------~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPH------PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCc------hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHH
Confidence 47889999999999999999999997773 466777888899999999999999999999997654 47889999
Q ss_pred HHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHH
Q psy17788 195 AASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDAS 274 (365)
Q Consensus 195 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e 274 (365)
...++.++|.++|+.+++.. +.+.+..-..+.-|+-.|+++-|..+|.|.|+.--.+ ..++..+|.|++--+.+|
T Consensus 301 eam~~~~~a~~lYk~vlk~~---~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~s--peLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLH---PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQS--PELFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcC---CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCC--hHHHhhHHHHHHhhcchh
Confidence 99999999999999999998 9999999999999999999999999999999986664 457889999999999999
Q ss_pred HHHHHHHHHHHhC--CC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q psy17788 275 RAQALLEHTLTSY--PA-RVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVK 351 (365)
Q Consensus 275 ~A~~~fe~~l~~~--P~-~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~ 351 (365)
-+..-|++++... |. -.|+|..++.+....|+..-|..+|.-++. .++.....+.....++...|+.+.|+.++
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~---~d~~h~ealnNLavL~~r~G~i~~Arsll 452 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT---SDAQHGEALNNLAVLAARSGDILGARSLL 452 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc---cCcchHHHHHhHHHHHhhcCchHHHHHHH
Confidence 9999999999764 33 379999999999999999999999999998 35567788899999999999999999999
Q ss_pred HHHHHHH
Q psy17788 352 KEIEQYV 358 (365)
Q Consensus 352 ~kA~~~v 358 (365)
+-|-...
T Consensus 453 ~~A~s~~ 459 (478)
T KOG1129|consen 453 NAAKSVM 459 (478)
T ss_pred HHhhhhC
Confidence 8776543
No 57
>PLN03077 Protein ECB2; Provisional
Probab=99.60 E-value=2.4e-13 Score=143.25 Aligned_cols=254 Identities=11% Similarity=0.056 Sum_probs=133.5
Q ss_pred HHHhc-CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhc--cCccc----------------
Q psy17788 87 DELLQ-NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVI--NIRNE---------------- 147 (365)
Q Consensus 87 ~~l~~-~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~--p~~~~---------------- 147 (365)
..+.. ++..+|...|+++.. .+...|..++..+.+.|++++|..+|++..... |....
T Consensus 331 ~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~ 407 (857)
T PLN03077 331 QMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDV 407 (857)
T ss_pred HHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHH
Confidence 34444 555577777777642 345678888888888888888888888765522 21000
Q ss_pred -------------cchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q psy17788 148 -------------EDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKA 214 (365)
Q Consensus 148 -------------~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 214 (365)
.....++..++.++.+.|+.+.|..+|++.. .++...|..++..|.+.|+.++|..+|++++...
T Consensus 408 a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~--~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~ 485 (857)
T PLN03077 408 GVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP--EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTL 485 (857)
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 0112234444444444445555555544432 1233344444444445555555555555544332
Q ss_pred cCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q psy17788 215 GQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVW 294 (365)
Q Consensus 215 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w 294 (365)
+++...+..+...+.+.|..+.+..++..+++..... ...+...+..++.+.|+.+.|..+|+.. +.+...|
T Consensus 486 ---~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~-~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~ 557 (857)
T PLN03077 486 ---KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGF-DGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSW 557 (857)
T ss_pred ---CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCc-cceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhH
Confidence 3333333333333333333333333333332221100 1122233445666667777777666664 4456667
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy17788 295 GVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIE 355 (365)
Q Consensus 295 ~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~ 355 (365)
..++..|.+.|+.++|..+|+++....+.|+ ...|...+....+.|..+.+..+++.+.
T Consensus 558 n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd--~~T~~~ll~a~~~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 558 NILLTGYVAHGKGSMAVELFNRMVESGVNPD--EVTFISLLCACSRSGMVTQGLEYFHSME 616 (857)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--cccHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 7777777777777777777777766444332 3445555666666677777666666655
No 58
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.59 E-value=7.8e-13 Score=127.23 Aligned_cols=215 Identities=14% Similarity=0.126 Sum_probs=162.6
Q ss_pred CCCCCChHHHHHHhhcCCCCH-HHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHH
Q psy17788 92 NGEPVSPDGFDRMLLGQPNNS-ELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESL 170 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~~~p~~~-~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a 170 (365)
++...+...|+++...+|++. ......+.+++..|+++.|...++++++..| ++..+...++.++...|+++.|
T Consensus 132 g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P-----~~~~al~ll~~~~~~~gdw~~a 206 (398)
T PRK10747 132 GDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAP-----RHPEVLRLAEQAYIRTGAWSSL 206 (398)
T ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHHHhHHHH
Confidence 444466666666666666653 3333335666666777777777776666666 4556666666666666666666
Q ss_pred HHHHHHHHHcC------------------------------------------C-CHHHHHHHHHHHHHhCCHHHHHHHH
Q psy17788 171 QECLHEAVRCN------------------------------------------D-ETKVYMNMMEIYAASAQIRDLESTV 207 (365)
Q Consensus 171 ~~v~~ral~~~------------------------------------------~-~~~~~~~l~~~~~~~g~~~~A~~~~ 207 (365)
..++.+..+.. | +..++..++..+...|+.++|..++
T Consensus 207 ~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L 286 (398)
T PRK10747 207 LDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQII 286 (398)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 64444443221 1 3456777888999999999999999
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17788 208 KLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSY 287 (365)
Q Consensus 208 ~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~ 287 (365)
+++++. +.++.+...++.+ ..++++++...+++.++..|++ ..++..+|.++...|++++|+..|++++...
T Consensus 287 ~~~l~~----~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~--~~l~l~lgrl~~~~~~~~~A~~~le~al~~~ 358 (398)
T PRK10747 287 LDGLKR----QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDT--PLLWSTLGQLLMKHGEWQEASLAFRAALKQR 358 (398)
T ss_pred HHHHhc----CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999995 6688777777765 3489999999999999999996 4566777999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788 288 PARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ 320 (365)
Q Consensus 288 P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~ 320 (365)
|++.. +..++.++.+.|+.++|..+|++++.+
T Consensus 359 P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 359 PDAYD-YAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred CCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99644 668999999999999999999999874
No 59
>PLN03077 Protein ECB2; Provisional
Probab=99.59 E-value=5.9e-13 Score=140.33 Aligned_cols=249 Identities=12% Similarity=0.119 Sum_probs=129.2
Q ss_pred HHHhc-CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHH---------
Q psy17788 87 DELLQ-NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTS--------- 156 (365)
Q Consensus 87 ~~l~~-~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~--------- 156 (365)
..+.. ++..+|...|+++.. .+...|..++..+.+.|+.++|..+|++++..+++ +...+..
T Consensus 432 ~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~p-----d~~t~~~lL~a~~~~g 503 (857)
T PLN03077 432 EMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKP-----NSVTLIAALSACARIG 503 (857)
T ss_pred HHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCC-----CHhHHHHHHHHHhhhc
Confidence 34444 555577788877643 34567888888888888888888888888764332 1233333
Q ss_pred --------------------------HHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy17788 157 --------------------------LLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLL 210 (365)
Q Consensus 157 --------------------------~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 210 (365)
++.++.+.|+.+.|..+|... .++...|..++..|.+.|+.++|.++|++|
T Consensus 504 ~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M 580 (857)
T PLN03077 504 ALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFNRM 580 (857)
T ss_pred hHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444555555555555543 344445555555555555555555555555
Q ss_pred HHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy17788 211 LKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPAR 290 (365)
Q Consensus 211 l~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~ 290 (365)
.+.. ..++..++..+...+.+.|.+++|..+|+.+....+-.+.+..+..++.++.+.|++++|..+++++ ...|+
T Consensus 581 ~~~g--~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd- 656 (857)
T PLN03077 581 VESG--VNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD- 656 (857)
T ss_pred HHcC--CCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-
Confidence 4431 1333444444444555555555555555555433222223444444555555555555555555443 12222
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy17788 291 VDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKE 353 (365)
Q Consensus 291 ~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~k 353 (365)
..+|..++..+..+|+.+.+..+.++++.+ .| .....+.....++...|+++.|..+.+.
T Consensus 657 ~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l--~p-~~~~~y~ll~n~ya~~g~~~~a~~vr~~ 716 (857)
T PLN03077 657 PAVWGALLNACRIHRHVELGELAAQHIFEL--DP-NSVGYYILLCNLYADAGKWDEVARVRKT 716 (857)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CC-CCcchHHHHHHHHHHCCChHHHHHHHHH
Confidence 344555555555555555555555555542 22 2333444444444445555555555443
No 60
>KOG2002|consensus
Probab=99.59 E-value=9.5e-13 Score=131.37 Aligned_cols=261 Identities=13% Similarity=0.089 Sum_probs=198.7
Q ss_pred CCCCCChHHHHHHhhcCCCC-HHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCcc------------------------
Q psy17788 92 NGEPVSPDGFDRMLLGQPNN-SELWVKYMAYHLQATEIEKARSIARRALTVINIRN------------------------ 146 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~~~p~~-~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~------------------------ 146 (365)
++.-.|+..|.++|..+|.. ++.-+..+.++++.+..+.|+..|+||++..|..-
T Consensus 178 kdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ 257 (1018)
T KOG2002|consen 178 KDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQ 257 (1018)
T ss_pred ccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHH
Confidence 33345666666666666542 34445555555666666666666666666555220
Q ss_pred --------ccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q psy17788 147 --------EEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE----TKVYMNMMEIYAASAQIRDLESTVKLLLKKA 214 (365)
Q Consensus 147 --------~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 214 (365)
...++.+..-+++.+.-.|+++.+..+.+-++....+ ...++.++..|-..|++++|...|..+++..
T Consensus 258 ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~ 337 (1018)
T KOG2002|consen 258 LLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD 337 (1018)
T ss_pred HHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC
Confidence 0144556666666666678888999999988877643 2357889999999999999999999999987
Q ss_pred cCCCCc-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCC
Q psy17788 215 GQTHSS-VNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFG----DASRAQALLEHTLTSYPA 289 (365)
Q Consensus 215 ~~~~~~-~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g----~~e~A~~~fe~~l~~~P~ 289 (365)
+.+ .-.++.+|+.++..|+++.|..+|++.+...|+. ..++.-+|.++...+ ..++|..+..+++...|.
T Consensus 338 ---~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~--~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~ 412 (1018)
T KOG2002|consen 338 ---NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNN--YETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPV 412 (1018)
T ss_pred ---CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcch--HHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccc
Confidence 666 7788999999999999999999999999999996 556677788888775 678999999999999999
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q psy17788 290 RVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ---KLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVR 359 (365)
Q Consensus 290 ~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~---~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~ 359 (365)
+.++|+.++.++... ++-.+..+|.+|+.. +..+ -...+....+...-..|+++.|...+..|+.-..
T Consensus 413 d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~ 483 (1018)
T KOG2002|consen 413 DSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQ-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLL 483 (1018)
T ss_pred cHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCC-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhh
Confidence 999999999998765 455558888888841 1111 3457788888888889999999999999988743
No 61
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.57 E-value=1.1e-13 Score=126.49 Aligned_cols=141 Identities=17% Similarity=0.266 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q psy17788 152 NVWTSLLNLEHLYGTKESLQECLHEAVRCND-ETKVYMNMMEIYAASA-QIRDLESTVKLLLKKAGQTHSSVNIYLQCAT 229 (365)
Q Consensus 152 ~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~ 229 (365)
-+|+.|+++..+.+..+.|+.+|.+|+...+ ...+|..+|.++...+ +.+.|..+|+++++.| +.+..+|..|++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f---~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF---PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH---TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC---CCCHHHHHHHHH
Confidence 3788999988888888999999999986554 4678889999988854 4555999999999999 999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHH
Q psy17788 230 LLLRLGQKDTARHILQRGLNNLPPAV-HVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWG 295 (365)
Q Consensus 230 ~~~~~g~~~~A~~~l~ral~~~p~~~-~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~ 295 (365)
++...|+.+.||.+|+|++..+|... .-.+|.+|+.++.+.|+.+....++.++...+|....++.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~ 145 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLEL 145 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHH
Confidence 99999999999999999999999876 5679999999999999999999999999999998655444
No 62
>KOG1840|consensus
Probab=99.57 E-value=3.1e-12 Score=124.00 Aligned_cols=254 Identities=13% Similarity=0.153 Sum_probs=194.7
Q ss_pred CCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCcccc---chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC---
Q psy17788 109 PNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEE---DRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND--- 182 (365)
Q Consensus 109 p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~---~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~--- 182 (365)
|.-..+...++..|...|++++|..++++|+...-.+..- .-......++.++...+.+.+|..+|++|+.+..
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 5555666778999999999999999999999972111000 2223334577788899999999999999997632
Q ss_pred -----C-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc----CC-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q psy17788 183 -----E-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAG----QT-HSSVNIYLQCATLLLRLGQKDTARHILQRGLNNL 251 (365)
Q Consensus 183 -----~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~----~~-~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~ 251 (365)
. ..++..|+.+|...|++.+|..++++++...- .. +.-...+...+..+...+++++|..++++++++.
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 2 24778899999999999999999999998751 11 2234567888888999999999999999998873
Q ss_pred ---CCcch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q psy17788 252 ---PPAVH---VTLITRFALAENKFGDASRAQALLEHTLTSY--------PARVDVWGVYVDMLVKSDRVDLGRQVIQRA 317 (365)
Q Consensus 252 ---p~~~~---~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~--------P~~~~~w~~~~~~~~~~g~~~~Ar~~~era 317 (365)
|...+ ..+...+|.++.+.|++++|..+|++++... +........++..+...+.+.+|-.+|+++
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 33333 4577889999999999999999999999864 221234555666668888999899988888
Q ss_pred HhC----CCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhh
Q psy17788 318 VTQ----KLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNSK 362 (365)
Q Consensus 318 l~~----~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~~ 362 (365)
+.. ....+.....+...+..+..+|+++.|.++-++++.+=+..+
T Consensus 436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~ 484 (508)
T KOG1840|consen 436 KDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRL 484 (508)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcC
Confidence 762 112334566788888899999999999999999998766544
No 63
>PLN02789 farnesyltranstransferase
Probab=99.56 E-value=2.6e-12 Score=119.04 Aligned_cols=203 Identities=11% Similarity=0.063 Sum_probs=171.9
Q ss_pred CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHccc-CHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCH--H
Q psy17788 92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQAT-EIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTK--E 168 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~-~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~--~ 168 (365)
+..++|+..++++|..+|.+..+|...+.++...+ .++++...+++++...| .+..+|.....+....|.. +
T Consensus 51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-----knyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-----KNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-----cchHHhHHHHHHHHHcCchhhH
Confidence 56669999999999999999999999999998888 68999999999999888 7788999877777677753 6
Q ss_pred HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHc---CCh----HHH
Q psy17788 169 SLQECLHEAVRCND-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRL---GQK----DTA 240 (365)
Q Consensus 169 ~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~---g~~----~~A 240 (365)
.+...+.+++..+| +..+|...+-++...|+++++++.++++++.. +.+..+|...+.++... |.+ +.+
T Consensus 126 ~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d---~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 126 KELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED---VRNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC---CCchhHHHHHHHHHHhccccccccccHHHH
Confidence 78899999999998 45799999999999999999999999999998 99999999999887765 333 467
Q ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc
Q psy17788 241 RHILQRGLNNLPPAVHVTLITRFALAENK----FGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKS 304 (365)
Q Consensus 241 ~~~l~ral~~~p~~~~~~~~~~~a~~~~~----~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~ 304 (365)
..+..++|...|.+..++.+. +.++.. .+....|...+.+++...|++..+...+++++...
T Consensus 203 l~y~~~aI~~~P~N~SaW~Yl--~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 203 LKYTIDAILANPRNESPWRYL--RGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHHHHhCCCCcCHHHHH--HHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 888889999999987765444 555555 34456799999999999999999999999998753
No 64
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=6.3e-12 Score=111.95 Aligned_cols=225 Identities=14% Similarity=0.100 Sum_probs=189.1
Q ss_pred HcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHHh
Q psy17788 123 LQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND-----ETKVYMNMMEIYAAS 197 (365)
Q Consensus 123 ~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~-----~~~~~~~l~~~~~~~ 197 (365)
+-.++.++|...|-..++..| +..++-+++++++.+.|..+.|+.+-+..+...+ ...+...++.-|+..
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d~-----~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~a 120 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQEDP-----ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAA 120 (389)
T ss_pred HhhcCcchHHHHHHHHHhcCc-----hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHh
Confidence 345667999999999999777 7789999999999999999999999988876543 123668889999999
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHH---HHHHHHHHHHHcCCHH
Q psy17788 198 AQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVT---LITRFALAENKFGDAS 274 (365)
Q Consensus 198 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~---~~~~~a~~~~~~g~~e 274 (365)
|-+++|..+|..++... .--..+...+..+|-...++++|+.+-.+.....+..-.+. ++..+|..+....+.+
T Consensus 121 Gl~DRAE~~f~~L~de~---efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d 197 (389)
T COG2956 121 GLLDRAEDIFNQLVDEG---EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVD 197 (389)
T ss_pred hhhhHHHHHHHHHhcch---hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHH
Confidence 99999999999998853 34567889999999999999999999998888877654433 4445555555678899
Q ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy17788 275 RAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEI 354 (365)
Q Consensus 275 ~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA 354 (365)
+|+.++.++++.+|+.+.+=+.+++++...|++..|...+++++.+ .|.....+......-+...|..++...-+.++
T Consensus 198 ~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ--n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~ 275 (389)
T COG2956 198 RARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ--NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRA 275 (389)
T ss_pred HHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999996 34555667777777778899999999888887
Q ss_pred HHH
Q psy17788 355 EQY 357 (365)
Q Consensus 355 ~~~ 357 (365)
++-
T Consensus 276 ~~~ 278 (389)
T COG2956 276 MET 278 (389)
T ss_pred HHc
Confidence 764
No 65
>KOG1914|consensus
Probab=99.52 E-value=1.1e-11 Score=117.10 Aligned_cols=251 Identities=16% Similarity=0.224 Sum_probs=167.7
Q ss_pred CChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHH-hCCHHHHH---
Q psy17788 96 VSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHL-YGTKESLQ--- 171 (365)
Q Consensus 96 ~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~-~g~~~~a~--- 171 (365)
+..+.||+.+...|.++.+|..|+...+...+++....+|.|||...= +.++|..|+..-.. .|...+.+
T Consensus 37 ~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL------nlDLW~lYl~YVR~~~~~~~~~r~~m 110 (656)
T KOG1914|consen 37 KVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL------NLDLWKLYLSYVRETKGKLFGYREKM 110 (656)
T ss_pred HHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh------hHhHHHHHHHHHHHHccCcchHHHHH
Confidence 667777777777777777888777777777777777777777776332 36777777764332 23333332
Q ss_pred -HHHHHHHHcCC----CHHHHHHHHHHHH---------HhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcC--
Q psy17788 172 -ECLHEAVRCND----ETKVYMNMMEIYA---------ASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLG-- 235 (365)
Q Consensus 172 -~v~~ral~~~~----~~~~~~~l~~~~~---------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g-- 235 (365)
+.|.=++..+- +..+|..++.++. ...+++..+.+|++|+..-. .+-.++|..|-.+....+
T Consensus 111 ~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm--~nlEkLW~DY~~fE~~IN~~ 188 (656)
T KOG1914|consen 111 VQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPM--HNLEKLWKDYEAFEQEINII 188 (656)
T ss_pred HHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcc--ccHHHHHHHHHHHHHHHHHH
Confidence 23333333322 4557777777643 33467777888888886531 333578888877765532
Q ss_pred -----------ChHHHHHHHHHHHhcC-------CC---------cchHHHHHHHHHHHHHcCCH--------HHHHHHH
Q psy17788 236 -----------QKDTARHILQRGLNNL-------PP---------AVHVTLITRFALAENKFGDA--------SRAQALL 280 (365)
Q Consensus 236 -----------~~~~A~~~l~ral~~~-------p~---------~~~~~~~~~~a~~~~~~g~~--------e~A~~~f 280 (365)
.+-.|+.+++...... |. ...+.+|.+++.++..++-. .+..-+|
T Consensus 189 tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yay 268 (656)
T KOG1914|consen 189 TARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAY 268 (656)
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHH
Confidence 3556666666543321 11 11366788888888765432 3556678
Q ss_pred HHHHHhCCCChhHHHHHHHHHHhcCC--------------hHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCC---
Q psy17788 281 EHTLTSYPARVDVWGVYVDMLVKSDR--------------VDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGD--- 343 (365)
Q Consensus 281 e~~l~~~P~~~~~w~~~~~~~~~~g~--------------~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~--- 343 (365)
+++|...+-.+++|..|..++...++ .++++.+|||++.. ..+..+.++..|.++++..-+
T Consensus 269 eQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~--l~~~~~~Ly~~~a~~eE~~~~~n~ 346 (656)
T KOG1914|consen 269 EQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEG--LLKENKLLYFALADYEESRYDDNK 346 (656)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhHHHhcccch
Confidence 99999999999999999988877766 78999999999983 235577888888888887666
Q ss_pred HHHHHHHHHHHHH
Q psy17788 344 AEAVENVKKEIEQ 356 (365)
Q Consensus 344 ~~~a~~v~~kA~~ 356 (365)
.+.+-..+++++.
T Consensus 347 ~~~~~~~~~~ll~ 359 (656)
T KOG1914|consen 347 EKKVHEIYNKLLK 359 (656)
T ss_pred hhhhHHHHHHHHh
Confidence 6666666666654
No 66
>PLN02789 farnesyltranstransferase
Probab=99.52 E-value=1.6e-11 Score=113.74 Aligned_cols=218 Identities=9% Similarity=0.009 Sum_probs=174.4
Q ss_pred CCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHcCCC-HH
Q psy17788 108 QPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYG-TKESLQECLHEAVRCNDE-TK 185 (365)
Q Consensus 108 ~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g-~~~~a~~v~~ral~~~~~-~~ 185 (365)
.|+...+|-.+-..+...+..++|..++.++|...| ++..+|.....+....| .++.++..+.+++..+|. ..
T Consensus 33 ~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP-----~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyq 107 (320)
T PLN02789 33 TPEFREAMDYFRAVYASDERSPRALDLTADVIRLNP-----GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQ 107 (320)
T ss_pred CHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCc-----hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchH
Confidence 344455555555666677788999999999999999 78999998888887777 579999999999999985 47
Q ss_pred HHHHHHHHHHHhCCH--HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHH
Q psy17788 186 VYMNMMEIYAASAQI--RDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRF 263 (365)
Q Consensus 186 ~~~~l~~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~ 263 (365)
+|.+.+.++.+.|.. +++..++++++... |.+..+|...+-++...|++++++..+.++|+.+|.+.+++...
T Consensus 108 aW~~R~~~l~~l~~~~~~~el~~~~kal~~d---pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R-- 182 (320)
T PLN02789 108 IWHHRRWLAEKLGPDAANKELEFTRKILSLD---AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQR-- 182 (320)
T ss_pred HhHHHHHHHHHcCchhhHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHH--
Confidence 898888888888864 67899999999998 99999999999999999999999999999999999986655444
Q ss_pred HHHHHHc---CC----HHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc----CChHHHHHHHHHHHhCCCCCCCcHHHHH
Q psy17788 264 ALAENKF---GD----ASRAQALLEHTLTSYPARVDVWGVYVDMLVKS----DRVDLGRQVIQRAVTQKLPPKKLKPLYM 332 (365)
Q Consensus 264 a~~~~~~---g~----~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~----g~~~~Ar~~~eral~~~l~~~~~~~~~~ 332 (365)
+.+..+. |. .+....+..++|..+|++..+|..++.++... +...+|...+.+++.. .+.......
T Consensus 183 ~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~---~~~s~~al~ 259 (320)
T PLN02789 183 YFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK---DSNHVFALS 259 (320)
T ss_pred HHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc---cCCcHHHHH
Confidence 5444444 32 35788888999999999999999999999873 4556788899998863 233344444
Q ss_pred HHHHHH
Q psy17788 333 KWLKLE 338 (365)
Q Consensus 333 ~~l~~e 338 (365)
-.++..
T Consensus 260 ~l~d~~ 265 (320)
T PLN02789 260 DLLDLL 265 (320)
T ss_pred HHHHHH
Confidence 444444
No 67
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.52 E-value=2.1e-11 Score=125.65 Aligned_cols=86 Identities=15% Similarity=0.030 Sum_probs=52.5
Q ss_pred CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788 92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ 171 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~ 171 (365)
++.+.|+..|++++..+|+++.++..++..+.+.++.++|+..+++++...| .... ...++.++...+....|+
T Consensus 116 gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp-----~~~~-~l~layL~~~~~~~~~AL 189 (822)
T PRK14574 116 KRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDP-----TVQN-YMTLSYLNRATDRNYDAL 189 (822)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCc-----chHH-HHHHHHHHHhcchHHHHH
Confidence 4444667777777777777777776666666666777777777777666555 2111 133333443344554577
Q ss_pred HHHHHHHHcCCC
Q psy17788 172 ECLHEAVRCNDE 183 (365)
Q Consensus 172 ~v~~ral~~~~~ 183 (365)
..|++++..+|.
T Consensus 190 ~~~ekll~~~P~ 201 (822)
T PRK14574 190 QASSEAVRLAPT 201 (822)
T ss_pred HHHHHHHHhCCC
Confidence 777777777664
No 68
>KOG1125|consensus
Probab=99.52 E-value=1.6e-12 Score=123.61 Aligned_cols=232 Identities=12% Similarity=0.110 Sum_probs=190.2
Q ss_pred HHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHH
Q psy17788 116 VKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-TKVYMNMMEIY 194 (365)
Q Consensus 116 ~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~~~l~~~~ 194 (365)
+.-+.-+++.|++-+|.-.|+.|++..| ++.++|..++......++...|+..++|++++.|. ..+...|+-.|
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP-----~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSy 363 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDP-----QHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSY 363 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhCh-----HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 3556677899999999999999999999 88999999999888888999999999999999985 57889999999
Q ss_pred HHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcC---------ChHHHHHHHHHHHhcCCCcchHHHHHHHHH
Q psy17788 195 AASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLG---------QKDTARHILQRGLNNLPPAVHVTLITRFAL 265 (365)
Q Consensus 195 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g---------~~~~A~~~l~ral~~~p~~~~~~~~~~~a~ 265 (365)
...|.-.+|...+..-+... .+.+|+..+.--...+ .+.....+|-.|...+|...+..+...+|.
T Consensus 364 tNeg~q~~Al~~L~~Wi~~~-----p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGV 438 (579)
T KOG1125|consen 364 TNEGLQNQALKMLDKWIRNK-----PKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGV 438 (579)
T ss_pred hhhhhHHHHHHHHHHHHHhC-----ccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHH
Confidence 99999999999999998753 2334433332111111 234455667777777785555667788899
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHH
Q psy17788 266 AENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAE 345 (365)
Q Consensus 266 ~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~ 345 (365)
+++-.|++++|+..|+.+|...|++..+|+.||-.+..-.+..+|+..|.||+.+ .|. ....+...+--+...|.++
T Consensus 439 Ly~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~-yVR~RyNlgIS~mNlG~yk 515 (579)
T KOG1125|consen 439 LYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPG-YVRVRYNLGISCMNLGAYK 515 (579)
T ss_pred HHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCC-eeeeehhhhhhhhhhhhHH
Confidence 9999999999999999999999999999999999999999999999999999975 555 3444555555567889999
Q ss_pred HHHHHHHHHHHHHHh
Q psy17788 346 AVENVKKEIEQYVRN 360 (365)
Q Consensus 346 ~a~~v~~kA~~~v~~ 360 (365)
+|...+=.||..-++
T Consensus 516 EA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 516 EAVKHLLEALSMQRK 530 (579)
T ss_pred HHHHHHHHHHHhhhc
Confidence 999999999887665
No 69
>KOG4162|consensus
Probab=99.52 E-value=4.6e-12 Score=123.90 Aligned_cols=255 Identities=16% Similarity=0.141 Sum_probs=188.9
Q ss_pred CChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy17788 96 VSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLH 175 (365)
Q Consensus 96 ~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ 175 (365)
.++..+++++..+|+|+.+-+.++..|.-.++++.|....+++|+..+. +....|.-++-+...++++..|+.+..
T Consensus 462 kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~----~~~~~whLLALvlSa~kr~~~Al~vvd 537 (799)
T KOG4162|consen 462 KSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRG----DSAKAWHLLALVLSAQKRLKEALDVVD 537 (799)
T ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC----ccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 3677899999999999999999999999999999999999999997564 667899999988888889998988888
Q ss_pred HHHHcCCCHHHH-HHHHHHHHHhC-------------------------------------------CHHHHHHHHHHHH
Q psy17788 176 EAVRCNDETKVY-MNMMEIYAASA-------------------------------------------QIRDLESTVKLLL 211 (365)
Q Consensus 176 ral~~~~~~~~~-~~l~~~~~~~g-------------------------------------------~~~~A~~~~~~al 211 (365)
-++.-.+...+. ..-+.+...-| +..++.+.+..+.
T Consensus 538 ~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls 617 (799)
T KOG4162|consen 538 AALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS 617 (799)
T ss_pred HHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHH
Confidence 887665531100 00011111111 2223333333332
Q ss_pred HH-------hc-----C------CCC-----cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Q psy17788 212 KK-------AG-----Q------THS-----SVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAEN 268 (365)
Q Consensus 212 ~~-------~~-----~------~~~-----~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~ 268 (365)
.. ++ . .+. ...+|...+..+...+..++|+.++..+-...|.. +++|...|.++.
T Consensus 618 ~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~--~~~~~~~G~~~~ 695 (799)
T KOG4162|consen 618 SLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLS--ASVYYLRGLLLE 695 (799)
T ss_pred HHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhh--HHHHHHhhHHHH
Confidence 21 10 0 011 14688888888888888888888888888888774 567777788888
Q ss_pred HcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHH--HHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHH
Q psy17788 269 KFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQ--VIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEA 346 (365)
Q Consensus 269 ~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~--~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~ 346 (365)
..|..++|...|..++..+|+++.+...++.++.+.|+..-+.. ++..++.. ++.+...|...+..-++.|+.+.
T Consensus 696 ~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~---dp~n~eaW~~LG~v~k~~Gd~~~ 772 (799)
T KOG4162|consen 696 VKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL---DPLNHEAWYYLGEVFKKLGDSKQ 772 (799)
T ss_pred HHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHccchHH
Confidence 88888888888888888888888888888888888887666655 88888863 44577888888888888888888
Q ss_pred HHHHHHHHHHHHH
Q psy17788 347 VENVKKEIEQYVR 359 (365)
Q Consensus 347 a~~v~~kA~~~v~ 359 (365)
|-..|+-|++.-+
T Consensus 773 Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 773 AAECFQAALQLEE 785 (799)
T ss_pred HHHHHHHHHhhcc
Confidence 8888888887544
No 70
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.51 E-value=4.4e-12 Score=113.15 Aligned_cols=188 Identities=12% Similarity=-0.035 Sum_probs=140.3
Q ss_pred CCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHH--
Q psy17788 108 QPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETK-- 185 (365)
Q Consensus 108 ~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~-- 185 (365)
++.....++..+..+...|+++.|...|++++...|... ....+|+.++.++...|+++.|+..|+++++..|+..
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~--~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSP--YAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch--hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 456778888888888888999999999988888777321 1235677888888888888888888888888877432
Q ss_pred --HHHHHHHHHHHh--------CCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc
Q psy17788 186 --VYMNMMEIYAAS--------AQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV 255 (365)
Q Consensus 186 --~~~~l~~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~ 255 (365)
++..++.++... |+++.|.+.|++++..+ |.+...+..+..+....+ .+
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~a~~~~~~~~~-------~~----------- 165 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY---PNSEYAPDAKKRMDYLRN-------RL----------- 165 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC---CCChhHHHHHHHHHHHHH-------HH-----------
Confidence 466667777655 67888888888888887 777666544332211100 00
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788 256 HVTLITRFALAENKFGDASRAQALLEHTLTSYPAR---VDVWGVYVDMLVKSDRVDLGRQVIQRAVT 319 (365)
Q Consensus 256 ~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~---~~~w~~~~~~~~~~g~~~~Ar~~~eral~ 319 (365)
.......|.++++.|++..|...|++++..+|+. ..+|..++..+.+.|+.++|..+++.+..
T Consensus 166 -~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 166 -AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 0112356888899999999999999999998865 47899999999999999999998888765
No 71
>KOG1129|consensus
Probab=99.51 E-value=1.8e-12 Score=115.49 Aligned_cols=241 Identities=15% Similarity=0.132 Sum_probs=200.5
Q ss_pred CCCHHHHHHHHHHHHcccCHHHHHHHHHHHHh--h-ccCccccchHHHH--HHHHHHHHHhCCHHHHHHHHHHHHHcCCC
Q psy17788 109 PNNSELWVKYMAYHLQATEIEKARSIARRALT--V-INIRNEEDRLNVW--TSLLNLEHLYGTKESLQECLHEAVRCNDE 183 (365)
Q Consensus 109 p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~--~-~p~~~~~~~~~~w--~~~~~l~~~~g~~~~a~~v~~ral~~~~~ 183 (365)
|.-....+.|+-+| .+++..|-......+. . -|..+.....+-| ..++.++.+.|-+..|.+.|+.++...|.
T Consensus 178 p~l~kaLFey~fyh--enDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~ 255 (478)
T KOG1129|consen 178 PTLVKALFEYLFYH--ENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPH 255 (478)
T ss_pred hHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCc
Confidence 33445566665544 4556666544333222 1 1222222223334 36778999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHH
Q psy17788 184 TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRF 263 (365)
Q Consensus 184 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~ 263 (365)
...|..+..+|.+......|..+|...+..| |.+.......++++...++.++|.++|+++++..|.+ +..+-..
T Consensus 256 ~dTfllLskvY~ridQP~~AL~~~~~gld~f---P~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~n--vEaiAci 330 (478)
T KOG1129|consen 256 PDTFLLLSKVYQRIDQPERALLVIGEGLDSF---PFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPIN--VEAIACI 330 (478)
T ss_pred hhHHHHHHHHHHHhccHHHHHHHHhhhhhcC---CchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCcc--ceeeeee
Confidence 9999999999999999999999999999999 9999999999999999999999999999999999984 6676777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCC
Q psy17788 264 ALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGD 343 (365)
Q Consensus 264 a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~ 343 (365)
|.-++--|+++.|..+|.++|..--.++.++...+-|..-.+++|-+...|+||++.--.+....++|.......-..||
T Consensus 331 a~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD 410 (478)
T KOG1129|consen 331 AVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGD 410 (478)
T ss_pred eeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccc
Confidence 88888899999999999999999999999999999999999999999999999999544467788899999988888999
Q ss_pred HHHHHHHHHHHHH
Q psy17788 344 AEAVENVKKEIEQ 356 (365)
Q Consensus 344 ~~~a~~v~~kA~~ 356 (365)
...|.+.+.-|+-
T Consensus 411 ~nlA~rcfrlaL~ 423 (478)
T KOG1129|consen 411 FNLAKRCFRLALT 423 (478)
T ss_pred hHHHHHHHHHHhc
Confidence 9999999988764
No 72
>KOG2076|consensus
Probab=99.49 E-value=1.7e-11 Score=121.72 Aligned_cols=238 Identities=16% Similarity=0.134 Sum_probs=179.7
Q ss_pred cCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHH-
Q psy17788 107 GQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETK- 185 (365)
Q Consensus 107 ~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~- 185 (365)
.+|++...|..++....++|.++.|+-+|.||++..| .+.......+.++..+|+...|...|.++++.+|+..
T Consensus 202 L~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p-----~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~ 276 (895)
T KOG2076|consen 202 LNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANP-----SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDI 276 (895)
T ss_pred cCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC-----cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhH
Confidence 4799999999999999999999999999999999999 5566677888999999999999999999999999432
Q ss_pred -----HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh-----------
Q psy17788 186 -----VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLN----------- 249 (365)
Q Consensus 186 -----~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~----------- 249 (365)
.-..++..+...++-+.|.+.++.++.+.. ...+...+.-++.+++...+++.|.........
T Consensus 277 er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~-~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~ 355 (895)
T KOG2076|consen 277 ERIEDLIRRVAHYFITHNERERAAKALEGALSKEK-DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWD 355 (895)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc-ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhh
Confidence 334557777788888999999999888421 133344555666777666666666554433222
Q ss_pred ---------------------------------------------------cCCCcchHHHHHHHHHHHHHcCCHHHHHH
Q psy17788 250 ---------------------------------------------------NLPPAVHVTLITRFALAENKFGDASRAQA 278 (365)
Q Consensus 250 ---------------------------------------------------~~p~~~~~~~~~~~a~~~~~~g~~e~A~~ 278 (365)
..+...++.++...+..+...|.+..|..
T Consensus 356 ~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~ 435 (895)
T KOG2076|consen 356 TDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALR 435 (895)
T ss_pred hhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHH
Confidence 00111246677777888888888888888
Q ss_pred HHHHHHHhCCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy17788 279 LLEHTLTSYPAR-VDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKE 353 (365)
Q Consensus 279 ~fe~~l~~~P~~-~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~k 353 (365)
+|..++...+.+ ..+|...|.||...|.+++|...|++++.. .|.+.+.-.....+..+.|+.+.|..+.++
T Consensus 436 ~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~---~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 436 LLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL---APDNLDARITLASLYQQLGNHEKALETLEQ 508 (895)
T ss_pred HHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc---CCCchhhhhhHHHHHHhcCCHHHHHHHHhc
Confidence 888888776653 578888888888888888888888888873 334566677777788888888855555443
No 73
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.49 E-value=6.3e-12 Score=112.14 Aligned_cols=182 Identities=8% Similarity=0.014 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHH---H
Q psy17788 151 LNVWTSLLNLEHLYGTKESLQECLHEAVRCNDET----KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVN---I 223 (365)
Q Consensus 151 ~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~ 223 (365)
...++..+..+...|+++.|...|++++..+|.. .++..++.++...|++++|+..|+++++.+ |.++. +
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a 109 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH---PNHPDADYA 109 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCCchHHH
Confidence 4455555555555555555555555555555432 244555555555555555555555555555 33332 4
Q ss_pred HHHHHHHHHHc--------CChHHHHHHHHHHHhcCCCcchHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q psy17788 224 YLQCATLLLRL--------GQKDTARHILQRGLNNLPPAVHVT-LITRFALAENKFGDASRAQALLEHTLTSYPARVDVW 294 (365)
Q Consensus 224 ~~~~a~~~~~~--------g~~~~A~~~l~ral~~~p~~~~~~-~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w 294 (365)
|+.++.++... |+++.|...|++++...|...... .+..++..... . ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~----------~----------~~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNR----------L----------AGKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHH----------H----------HHHH
Confidence 55555555443 445555555555555555432211 00100110000 0 0112
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy17788 295 GVYVDMLVKSDRVDLGRQVIQRAVTQKLP-PKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQ 356 (365)
Q Consensus 295 ~~~~~~~~~~g~~~~Ar~~~eral~~~l~-~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~ 356 (365)
...++++...|++..|...|++++.. .| .+.....|...+..+...|+.+.+..+++....
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVEN-YPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHH-CCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35678899999999999999999983 33 234567888999999999999999998876543
No 74
>KOG1258|consensus
Probab=99.48 E-value=4.1e-11 Score=115.09 Aligned_cols=248 Identities=13% Similarity=0.180 Sum_probs=147.0
Q ss_pred CCCChHHHHHHhhcCCCCHHHHHHHHHHHH-cccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHH
Q psy17788 94 EPVSPDGFDRMLLGQPNNSELWVKYMAYHL-QATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQE 172 (365)
Q Consensus 94 ~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~-~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~ 172 (365)
...+..+|+|+|+.-|-|..+|+.|..++. ..|+.+.-|..|++|+..+.. .+-...+|-.|+.++...++...+..
T Consensus 95 ~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~--dF~S~~lWdkyie~en~qks~k~v~~ 172 (577)
T KOG1258|consen 95 AENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGL--DFLSDPLWDKYIEFENGQKSWKRVAN 172 (577)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhccc--chhccHHHHHHHHHHhccccHHHHHH
Confidence 335667777777777777777777777773 456666677777777775442 22345677777777777777777777
Q ss_pred HHHHHHHcCC-----------------------CHHHHHHHH-HHHH-----------------------HhCCHHHHHH
Q psy17788 173 CLHEAVRCND-----------------------ETKVYMNMM-EIYA-----------------------ASAQIRDLES 205 (365)
Q Consensus 173 v~~ral~~~~-----------------------~~~~~~~l~-~~~~-----------------------~~g~~~~A~~ 205 (365)
+|+|.+.+.- +.....++. .+.. .++..+++..
T Consensus 173 iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~ 252 (577)
T KOG1258|consen 173 IYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKT 252 (577)
T ss_pred HHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHH
Confidence 7777664311 000000000 0000 0001111111
Q ss_pred ------------------------HHHHHHHHh-----cCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcch
Q psy17788 206 ------------------------TVKLLLKKA-----GQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVH 256 (365)
Q Consensus 206 ------------------------~~~~al~~~-----~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~ 256 (365)
.|+..++.. +..+.+...|..|..+....|+++.+.-+|+|++-.... .
T Consensus 253 ~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~--Y 330 (577)
T KOG1258|consen 253 ILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCAL--Y 330 (577)
T ss_pred HHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhh--h
Confidence 111111110 112344567777777777777777777777777755444 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHH
Q psy17788 257 VTLITRFALAENKFGDASRAQALLEHTLTS-YPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWL 335 (365)
Q Consensus 257 ~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~-~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l 335 (365)
-.+|.+++.+....|+.+-|..++.++.+. .|+.+.+...++.+....|+++.|+.+++++.+ .+ +....+=.+++
T Consensus 331 ~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~-e~--pg~v~~~l~~~ 407 (577)
T KOG1258|consen 331 DEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIES-EY--PGLVEVVLRKI 407 (577)
T ss_pred HHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHh-hC--CchhhhHHHHH
Confidence 456677777777777777777766666654 455566667777777777777777777777776 33 33555666666
Q ss_pred HHHHhcCCHHHHH
Q psy17788 336 KLEEQYGDAEAVE 348 (365)
Q Consensus 336 ~~e~~~G~~~~a~ 348 (365)
.+++..|+.+.+.
T Consensus 408 ~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 408 NWERRKGNLEDAN 420 (577)
T ss_pred hHHHHhcchhhhh
Confidence 6677777666665
No 75
>KOG1258|consensus
Probab=99.48 E-value=4.5e-11 Score=114.78 Aligned_cols=251 Identities=20% Similarity=0.262 Sum_probs=188.8
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHH-HHhCCHHHHHHHHHHH
Q psy17788 99 DGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLE-HLYGTKESLQECLHEA 177 (365)
Q Consensus 99 ~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~-~~~g~~~~a~~v~~ra 177 (365)
..|...|...|.....|..|+....+.|..+.+..+|+|++..+| -...+|+.|+++. ...|+.+..+..|++|
T Consensus 66 ~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip-----~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A 140 (577)
T KOG1258|consen 66 EVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIP-----LSVDLWLSYLAFLKNNNGDPETLRDLFERA 140 (577)
T ss_pred HHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhh-----hHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 456667778899999999999999999999999999999999999 6789999999975 4667889999999999
Q ss_pred HHcCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH-----c--------------
Q psy17788 178 VRCND----ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLR-----L-------------- 234 (365)
Q Consensus 178 l~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~-----~-------------- 234 (365)
+..+. +...|-.++.+...+++......+|++.++.-. ..-...+..+-...-. .
T Consensus 141 ~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~--~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~ 218 (577)
T KOG1258|consen 141 KSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPL--HQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVA 218 (577)
T ss_pred HHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhh--hHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHH
Confidence 98875 567999999999999999999999999987520 0001111111111111 0
Q ss_pred --------------------------CChHHHHHHHHHHHhc-----------------------CCC-------cchHH
Q psy17788 235 --------------------------GQKDTARHILQRGLNN-----------------------LPP-------AVHVT 258 (365)
Q Consensus 235 --------------------------g~~~~A~~~l~ral~~-----------------------~p~-------~~~~~ 258 (365)
+..+++...+.+.+.. -|. .....
T Consensus 219 ~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~ 298 (577)
T KOG1258|consen 219 ERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLK 298 (577)
T ss_pred hhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHH
Confidence 0112222222221110 011 11356
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHH
Q psy17788 259 LITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLE 338 (365)
Q Consensus 259 ~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e 338 (365)
.|..+..+....|++++..-+|++++-.+.....+|+.|+......|+.+-|..++.+++.. ..++...+-..|..|+
T Consensus 299 nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i--~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 299 NWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKI--HVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhh--cCCCCcHHHHHHHHHH
Confidence 77888888888899999999999998888888889999999888889999999988888864 4456778888888899
Q ss_pred HhcCCHHHHHHHHHHHHHHH
Q psy17788 339 EQYGDAEAVENVKKEIEQYV 358 (365)
Q Consensus 339 ~~~G~~~~a~~v~~kA~~~v 358 (365)
...|+...|..++++..+-.
T Consensus 377 e~~~n~~~A~~~lq~i~~e~ 396 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESEY 396 (577)
T ss_pred HhhccHHHHHHHHHHHHhhC
Confidence 98999999988888876543
No 76
>KOG0624|consensus
Probab=99.47 E-value=3.8e-11 Score=107.81 Aligned_cols=270 Identities=10% Similarity=0.056 Sum_probs=206.8
Q ss_pred HHHHHhc-CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCcccc----ch----HHHHH
Q psy17788 85 AEDELLQ-NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEE----DR----LNVWT 155 (365)
Q Consensus 85 ~e~~l~~-~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~----~~----~~~w~ 155 (365)
..+-++. ++..-++.+|+++|...|+-..+-++.+..++++|+++.|..-|...|...|..+.. +. ..-|.
T Consensus 78 RaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~ 157 (504)
T KOG0624|consen 78 RATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWV 157 (504)
T ss_pred HHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHH
Confidence 3344444 777778889999999999999999999999999999999999999999977743211 10 11122
Q ss_pred HHHHH--HHHhCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q psy17788 156 SLLNL--EHLYGTKESLQECLHEAVRCND-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLL 232 (365)
Q Consensus 156 ~~~~l--~~~~g~~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~ 232 (365)
..-.+ ....|+...|+......|++.| +...+..-+.+|...|....|+.-++.+-+.- .++...++....+++
T Consensus 158 l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs---~DnTe~~ykis~L~Y 234 (504)
T KOG0624|consen 158 LVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS---QDNTEGHYKISQLLY 234 (504)
T ss_pred HHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc---ccchHHHHHHHHHHH
Confidence 11112 2234688889999999999888 44566777999999999999999998888876 889999999999999
Q ss_pred HcCChHHHHHHHHHHHhcCCCcchH-HHHHHH---------HHHHHHcCCHHHHHHHHHHHHHhCCCC----hhHHHHHH
Q psy17788 233 RLGQKDTARHILQRGLNNLPPAVHV-TLITRF---------ALAENKFGDASRAQALLEHTLTSYPAR----VDVWGVYV 298 (365)
Q Consensus 233 ~~g~~~~A~~~l~ral~~~p~~~~~-~~~~~~---------a~~~~~~g~~e~A~~~fe~~l~~~P~~----~~~w~~~~ 298 (365)
..|+.+.++.....+|+.+|.++.. ..|.++ +.-....+++..+....+++++..|.- ......+.
T Consensus 235 ~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c 314 (504)
T KOG0624|consen 235 TVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLC 314 (504)
T ss_pred hhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheee
Confidence 9999999999999999999985431 111111 112235688899999999999999984 45567778
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q psy17788 299 DMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRN 360 (365)
Q Consensus 299 ~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~ 360 (365)
.|+.+-|++.+|+..-.+++.. .+....++..-.+.+...-+++.|+.-|++|.++-++
T Consensus 315 ~C~~~d~~~~eAiqqC~evL~~---d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 315 TCYREDEQFGEAIQQCKEVLDI---DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred ecccccCCHHHHHHHHHHHHhc---CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 8899999999999999999973 3445666666667666667889999999999887554
No 77
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.46 E-value=3.9e-12 Score=104.64 Aligned_cols=125 Identities=10% Similarity=0.013 Sum_probs=107.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy17788 171 QECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNN 250 (365)
Q Consensus 171 ~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~ 250 (365)
..+|++++..+|.. +..++..+...|++++|...|++++... |.+..+|..+|.++...|++++|...|++++..
T Consensus 13 ~~~~~~al~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLSVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ---PWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 56788888887764 5567888888999999999999999887 889999999999999999999999999999998
Q ss_pred CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q psy17788 251 LPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLV 302 (365)
Q Consensus 251 ~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~ 302 (365)
.|.+ ...+..+|.++...|++++|+..|++++...|+++..|...+....
T Consensus 88 ~p~~--~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 DASH--PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCC--cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 8885 5566788999999999999999999999999999998887776554
No 78
>KOG1174|consensus
Probab=99.44 E-value=5.9e-11 Score=108.87 Aligned_cols=251 Identities=11% Similarity=0.046 Sum_probs=141.8
Q ss_pred CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788 92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ 171 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~ 171 (365)
|+..+|+..|+++...+|.+....-.|+..+.+.|+++.--.+..+.+..... ...-|+--+.+.....+++.|.
T Consensus 246 Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~-----ta~~wfV~~~~l~~~K~~~rAL 320 (564)
T KOG1174|consen 246 GDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKY-----TASHWFVHAQLLYDEKKFERAL 320 (564)
T ss_pred cCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhc-----chhhhhhhhhhhhhhhhHHHHH
Confidence 66667777777777777777766666666666666655555544444443221 1122433333333334555666
Q ss_pred HHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy17788 172 ECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNN 250 (365)
Q Consensus 172 ~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~ 250 (365)
..-+++|+.+|. ...++.-+.++...|+.++|.-.|+.+.... |.....|..+...|+..|.+.+|...-.-++..
T Consensus 321 ~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La---p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~ 397 (564)
T KOG1174|consen 321 NFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA---PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL 397 (564)
T ss_pred HHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc---hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence 666666666653 3455555666666666666666666666655 666666666666666666666666666666665
Q ss_pred CCCcchHHHHHHHH-HHH-HHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcH
Q psy17788 251 LPPAVHVTLITRFA-LAE-NKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLK 328 (365)
Q Consensus 251 ~p~~~~~~~~~~~a-~~~-~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~ 328 (365)
+|.+ ...+.-+| .++ +.-.-.++|.++++++|+..|....+-...+.++...|....++.++++.+. ..+ ..
T Consensus 398 ~~~s--A~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~-~~~---D~ 471 (564)
T KOG1174|consen 398 FQNS--ARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI-IFP---DV 471 (564)
T ss_pred hhcc--hhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh-hcc---cc
Confidence 5553 23333333 222 2222345666666666666666666666666666666666666666666665 222 22
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy17788 329 PLYMKWLKLEEQYGDAEAVENVKKEIEQ 356 (365)
Q Consensus 329 ~~~~~~l~~e~~~G~~~~a~~v~~kA~~ 356 (365)
.+-...++|-...+.+..+...|..|+.
T Consensus 472 ~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 472 NLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4455555555555555555555555543
No 79
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.44 E-value=2.5e-10 Score=108.09 Aligned_cols=260 Identities=13% Similarity=0.033 Sum_probs=176.5
Q ss_pred CCCCCChHHHHHHhhcCCCC---HHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHH---HHHHHHHHhC
Q psy17788 92 NGEPVSPDGFDRMLLGQPNN---SELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWT---SLLNLEHLYG 165 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~~~p~~---~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~---~~~~l~~~~g 165 (365)
++.+.+...+.++....|.+ ...+...+..+...|+++.|..++++++...| ....+|. .+..+....+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-----~~~~a~~~~~~~~~~~~~~~ 94 (355)
T cd05804 20 GERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-----RDLLALKLHLGAFGLGDFSG 94 (355)
T ss_pred CCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-----CcHHHHHHhHHHHHhccccc
Confidence 55566678888888777654 44566667777889999999999999999888 4445555 2333333345
Q ss_pred CHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHH
Q psy17788 166 TKESLQECLHEAVRCNDET-KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHIL 244 (365)
Q Consensus 166 ~~~~a~~v~~ral~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l 244 (365)
....+...+......+|.. ..+..++.++...|++++|...+++++... |.++.++..++.++...|++++|..++
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~---p~~~~~~~~la~i~~~~g~~~eA~~~l 171 (355)
T cd05804 95 MRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN---PDDAWAVHAVAHVLEMQGRFKEGIAFM 171 (355)
T ss_pred CchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5555666555533444443 344566888999999999999999999998 889999999999999999999999999
Q ss_pred HHHHhcCCCcch--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChhHHH----HHHHHHHhcCChHHHHH---HH
Q psy17788 245 QRGLNNLPPAVH--VTLITRFALAENKFGDASRAQALLEHTLTSYPA-RVDVWG----VYVDMLVKSDRVDLGRQ---VI 314 (365)
Q Consensus 245 ~ral~~~p~~~~--~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~-~~~~w~----~~~~~~~~~g~~~~Ar~---~~ 314 (365)
++++...|.... +..+..++.++...|++++|..+|++++...|. ...... .....+...|....+.. +.
T Consensus 172 ~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~ 251 (355)
T cd05804 172 ESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLA 251 (355)
T ss_pred HhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHH
Confidence 999988764322 345667899999999999999999999866662 111111 11222223343332222 22
Q ss_pred HHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q psy17788 315 QRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRN 360 (365)
Q Consensus 315 eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~ 360 (365)
..... ..+...........+......|+.+.+....+......+.
T Consensus 252 ~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~ 296 (355)
T cd05804 252 DYAAW-HFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASS 296 (355)
T ss_pred HHHHh-hcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 22211 1111122233345555666788999999999888887765
No 80
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.44 E-value=4.8e-11 Score=123.03 Aligned_cols=202 Identities=7% Similarity=0.022 Sum_probs=169.4
Q ss_pred HhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-
Q psy17788 104 MLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND- 182 (365)
Q Consensus 104 ~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~- 182 (365)
.+...|+++..-..-+....+.|+++.|+..|+++++..| ........++.+....|+.+.|+.++++++.-.|
T Consensus 26 ~~~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P-----~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~ 100 (822)
T PRK14574 26 GFVVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGP-----LQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNI 100 (822)
T ss_pred ccccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCc-----cchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCC
Confidence 3455788888888888888999999999999999999888 4432333888888888999999999999993211
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHH
Q psy17788 183 ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITR 262 (365)
Q Consensus 183 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~ 262 (365)
.......++.+|...|++++|+++|+++++.. |.++.++..++..+...++.++|+..+++++...|... .+..
T Consensus 101 ~~~~llalA~ly~~~gdyd~Aiely~kaL~~d---P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~---~~l~ 174 (822)
T PRK14574 101 SSRGLASAARAYRNEKRWDQALALWQSSLKKD---PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQ---NYMT 174 (822)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchH---HHHH
Confidence 23445555889999999999999999999999 99999999999999999999999999999999998842 2244
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q psy17788 263 FALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQR 316 (365)
Q Consensus 263 ~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~er 316 (365)
.+.++...++..+|...|++++..+|++.+++..|...+...|-...|.++..+
T Consensus 175 layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 175 LSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKE 228 (822)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 455665677777799999999999999999999999999999988777766554
No 81
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.41 E-value=5.7e-11 Score=112.46 Aligned_cols=205 Identities=12% Similarity=0.007 Sum_probs=162.8
Q ss_pred cCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHH-
Q psy17788 107 GQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETK- 185 (365)
Q Consensus 107 ~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~- 185 (365)
.+|+....|..++.++...|+.+.+...+.++....|... +....+.-.+.+....|+++.+..++++++..+|...
T Consensus 1 ~dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~ 78 (355)
T cd05804 1 ADPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARA--TERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLL 78 (355)
T ss_pred CCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH
Confidence 3799999999999999999999999999999888666331 3345555566677888999999999999999998664
Q ss_pred HHHHHHHHHHH----hCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHH
Q psy17788 186 VYMNMMEIYAA----SAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLIT 261 (365)
Q Consensus 186 ~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~ 261 (365)
++.. +..+.. .|....+...+....... |....++..++.++...|++++|...+++++...|.+ ..++.
T Consensus 79 a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~--~~~~~ 152 (355)
T cd05804 79 ALKL-HLGAFGLGDFSGMRDHVARVLPLWAPEN---PDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD--AWAVH 152 (355)
T ss_pred HHHH-hHHHHHhcccccCchhHHHHHhccCcCC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--cHHHH
Confidence 3332 223333 344555555554422222 6667777888899999999999999999999999996 44667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCh----hHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788 262 RFALAENKFGDASRAQALLEHTLTSYPARV----DVWGVYVDMLVKSDRVDLGRQVIQRAVT 319 (365)
Q Consensus 262 ~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~----~~w~~~~~~~~~~g~~~~Ar~~~eral~ 319 (365)
.+|.++...|++++|..++++++...|..+ ..|..++.++...|++++|..+|++++.
T Consensus 153 ~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 153 AVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 779999999999999999999999887543 3577899999999999999999999975
No 82
>KOG2003|consensus
Probab=99.40 E-value=4.4e-11 Score=110.78 Aligned_cols=242 Identities=12% Similarity=0.059 Sum_probs=197.9
Q ss_pred HHhc-CCCC-CChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhC
Q psy17788 88 ELLQ-NGEP-VSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYG 165 (365)
Q Consensus 88 ~l~~-~~~p-~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g 165 (365)
.+++ ++.- ++...-+.+|..+.-++.+...-+......|++++|.+.|+.||.... ......+...-.+...|
T Consensus 464 ~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nda-----sc~ealfniglt~e~~~ 538 (840)
T KOG2003|consen 464 RFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDA-----SCTEALFNIGLTAEALG 538 (840)
T ss_pred HHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCch-----HHHHHHHHhcccHHHhc
Confidence 3555 3333 788888899999999999999999999999999999999999998544 34555555555677889
Q ss_pred CHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHH
Q psy17788 166 TKESLQECLHEAVRCN-DETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHIL 244 (365)
Q Consensus 166 ~~~~a~~v~~ral~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l 244 (365)
+.++|..+|-+.-.+- .+..++..++++|....+..+|+++|-++.... |.+|.+...++.+|-+.|+-..|.+++
T Consensus 539 ~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sli---p~dp~ilskl~dlydqegdksqafq~~ 615 (840)
T KOG2003|consen 539 NLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLI---PNDPAILSKLADLYDQEGDKSQAFQCH 615 (840)
T ss_pred CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccC---CCCHHHHHHHHHHhhcccchhhhhhhh
Confidence 9999999998875443 366789999999999999999999999998887 999999999999999999999999998
Q ss_pred HHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q psy17788 245 QRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPP 324 (365)
Q Consensus 245 ~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~ 324 (365)
=.....+|.+ +.++--+|..+....-+++|+.+|+++--..|+...-..+.+.|+.+.|++.+|..+|..+-. ++|.
T Consensus 616 ydsyryfp~n--ie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr-kfpe 692 (840)
T KOG2003|consen 616 YDSYRYFPCN--IETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR-KFPE 692 (840)
T ss_pred hhcccccCcc--hHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCcc
Confidence 8888889985 666666788888899999999999999888888766556678899999999999999998876 5543
Q ss_pred CCcHHHHHHHHHHHHhcC
Q psy17788 325 KKLKPLYMKWLKLEEQYG 342 (365)
Q Consensus 325 ~~~~~~~~~~l~~e~~~G 342 (365)
...-.+-.+.+.-..|
T Consensus 693 --dldclkflvri~~dlg 708 (840)
T KOG2003|consen 693 --DLDCLKFLVRIAGDLG 708 (840)
T ss_pred --chHHHHHHHHHhcccc
Confidence 3444444444544444
No 83
>KOG3060|consensus
Probab=99.40 E-value=2.9e-10 Score=98.38 Aligned_cols=199 Identities=13% Similarity=0.017 Sum_probs=162.5
Q ss_pred CCCC-CChHHHHHHhhcCC------CCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHh
Q psy17788 92 NGEP-VSPDGFDRMLLGQP------NNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLY 164 (365)
Q Consensus 92 ~~~p-~a~~~fe~~l~~~p------~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~ 164 (365)
.+.| +....++..+...+ +--.++-+.+-..+..|+.+-|..++.+.-..+| .+..+-...+.+....
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp-----~S~RV~~lkam~lEa~ 99 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFP-----GSKRVGKLKAMLLEAT 99 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCC-----CChhHHHHHHHHHHHh
Confidence 4444 44555666554433 2234444555556889999999999999888888 6677877788888899
Q ss_pred CCHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHH
Q psy17788 165 GTKESLQECLHEAVRCNDETK-VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHI 243 (365)
Q Consensus 165 g~~~~a~~v~~ral~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 243 (365)
|.++.|+++|++.+.-+|... ++.+-+.+...+|+.-+|++-+...++.| +.+..+|..++.+|+..|+++.|..+
T Consensus 100 ~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F---~~D~EAW~eLaeiY~~~~~f~kA~fC 176 (289)
T KOG3060|consen 100 GNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF---MNDQEAWHELAEIYLSEGDFEKAAFC 176 (289)
T ss_pred hchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh---cCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence 999999999999999988654 56666778888899999999999999999 99999999999999999999999999
Q ss_pred HHHHHhcCCCcchHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q psy17788 244 LQRGLNNLPPAVHVTLITRFALAENKFG---DASRAQALLEHTLTSYPARVDVWGVYVDM 300 (365)
Q Consensus 244 l~ral~~~p~~~~~~~~~~~a~~~~~~g---~~e~A~~~fe~~l~~~P~~~~~w~~~~~~ 300 (365)
|+.++-..|..+ ....++|.+.+-.| +.+-|+.+|+++++.+|.+...|+...-+
T Consensus 177 lEE~ll~~P~n~--l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc 234 (289)
T KOG3060|consen 177 LEELLLIQPFNP--LYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLC 234 (289)
T ss_pred HHHHHHcCCCcH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHH
Confidence 999999999863 35678888888766 45689999999999999888888765443
No 84
>KOG1840|consensus
Probab=99.39 E-value=6.1e-11 Score=115.07 Aligned_cols=235 Identities=11% Similarity=0.083 Sum_probs=181.9
Q ss_pred HHHHHhc-CCCCCChHHHHHHhhc--------CCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccC---ccccchHH
Q psy17788 85 AEDELLQ-NGEPVSPDGFDRMLLG--------QPNNSELWVKYMAYHLQATEIEKARSIARRALTVINI---RNEEDRLN 152 (365)
Q Consensus 85 ~e~~l~~-~~~p~a~~~fe~~l~~--------~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~---~~~~~~~~ 152 (365)
+...+.. ++...|+..|+++|.. +|.-......++.+|+..+++++|..+|++||+..-. ........
T Consensus 205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~ 284 (508)
T KOG1840|consen 205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAA 284 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 3344444 6667888999999887 5555555566999999999999999999999983210 11112345
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCC------CH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc----CC-C
Q psy17788 153 VWTSLLNLEHLYGTKESLQECLHEAVRCND------ET---KVYMNMMEIYAASAQIRDLESTVKLLLKKAG----QT-H 218 (365)
Q Consensus 153 ~w~~~~~l~~~~g~~~~a~~v~~ral~~~~------~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~----~~-~ 218 (365)
+...++.++...|.+++|...+++|+.+.. .. ..+..++.++...+++++|..+|.++++..- .. +
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~ 364 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV 364 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch
Confidence 566666678888999999999999987642 22 2557778899999999999999999998752 11 2
Q ss_pred CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC----CC-cc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Q psy17788 219 SSVNIYLQCATLLLRLGQKDTARHILQRGLNNL----PP-AV-HVTLITRFALAENKFGDASRAQALLEHTLTS------ 286 (365)
Q Consensus 219 ~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~----p~-~~-~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~------ 286 (365)
.-+.+..++|.+|...|++++|..+|+.|+... .. .. .-..+..+|..+.+.+.+..|-.+|+.+...
T Consensus 365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~ 444 (508)
T KOG1840|consen 365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGP 444 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCC
Confidence 446789999999999999999999999999875 11 11 1335667888889999999898888887754
Q ss_pred -CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788 287 -YPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVT 319 (365)
Q Consensus 287 -~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~ 319 (365)
+|+-...+.+++-.|..+|+++.|..+-++++.
T Consensus 445 ~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 445 DHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred CCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 456677889999999999999999999999884
No 85
>KOG2003|consensus
Probab=99.39 E-value=1.4e-10 Score=107.52 Aligned_cols=267 Identities=14% Similarity=0.126 Sum_probs=199.2
Q ss_pred HHHHHHHHHHHHhcCCCCCChHHHHHHhhcCCC-CHHHHHHHHHHH-Hc-ccCHHHHHHHHHHHHhhccCccccchHHHH
Q psy17788 78 EEARIRQAEDELLQNGEPVSPDGFDRMLLGQPN-NSELWVKYMAYH-LQ-ATEIEKARSIARRALTVINIRNEEDRLNVW 154 (365)
Q Consensus 78 ~e~~~~~~e~~l~~~~~p~a~~~fe~~l~~~p~-~~~~w~~~~~~~-~~-~~~~e~A~~~~~raL~~~p~~~~~~~~~~w 154 (365)
.+.++.+..+.+.+++...+++++.-.-..+.. .+.+-..+...+ ++ -.++..|..+...||...-+ +....
T Consensus 419 ~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry-----n~~a~ 493 (840)
T KOG2003|consen 419 IDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY-----NAAAL 493 (840)
T ss_pred hhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc-----CHHHh
Confidence 345566666665557777777766544444432 233333444433 33 34688899999999885543 23445
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q psy17788 155 TSLLNLEHLYGTKESLQECLHEAVRCND-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLR 233 (365)
Q Consensus 155 ~~~~~l~~~~g~~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~ 233 (365)
..-.++....|++++|...|++|+.... +..+++.++..+...|+.++|.++|-++-... .++..+.+.++.+|..
T Consensus 494 ~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il---~nn~evl~qianiye~ 570 (840)
T KOG2003|consen 494 TNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL---LNNAEVLVQIANIYEL 570 (840)
T ss_pred hcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHH
Confidence 5555666778999999999999987654 34577888888889999999999998887766 7789999999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHH
Q psy17788 234 LGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQV 313 (365)
Q Consensus 234 ~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~ 313 (365)
..+...|+.+|-++....|+++ .+++++|.++-+.|+...|...+-..-.-+|-+.+..--++..|+...-.+.++.+
T Consensus 571 led~aqaie~~~q~~slip~dp--~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y 648 (840)
T KOG2003|consen 571 LEDPAQAIELLMQANSLIPNDP--AILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINY 648 (840)
T ss_pred hhCHHHHHHHHHHhcccCCCCH--HHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999999999999964 47789999999999999999888888888999988877778888888888999999
Q ss_pred HHHHHhCCCCCCCcHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHHH
Q psy17788 314 IQRAVTQKLPPKKLKPLYMKWLKL-EEQYGDAEAVENVKKEIEQYV 358 (365)
Q Consensus 314 ~eral~~~l~~~~~~~~~~~~l~~-e~~~G~~~~a~~v~~kA~~~v 358 (365)
|++|.-. .| +..-|...+.- -+..|++..+-.+|...-.-+
T Consensus 649 ~ekaali--qp--~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkf 690 (840)
T KOG2003|consen 649 FEKAALI--QP--NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKF 690 (840)
T ss_pred HHHHHhc--Cc--cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 9999753 33 34556666553 355799998888887654433
No 86
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.37 E-value=1.7e-10 Score=116.90 Aligned_cols=133 Identities=11% Similarity=0.066 Sum_probs=127.2
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHH
Q psy17788 183 ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITR 262 (365)
Q Consensus 183 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~ 262 (365)
...++..++.+..+.|.+++|..++++++... |++..++..++..+.+.+++++|+..+++++...|.+ ...+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~---Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~--~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF---PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSS--AREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC---CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC--HHHHHH
Confidence 47899999999999999999999999999999 9999999999999999999999999999999999996 556677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788 263 FALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ 320 (365)
Q Consensus 263 ~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~ 320 (365)
+|.++.+.|++++|..+|++++..+|++..+|..++..+.+.|+.+.|...|++|+..
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999999999999999999984
No 87
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.37 E-value=1.7e-10 Score=118.07 Aligned_cols=140 Identities=12% Similarity=0.048 Sum_probs=116.3
Q ss_pred HHHHHhh--cCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy17788 100 GFDRMLL--GQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEA 177 (365)
Q Consensus 100 ~fe~~l~--~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ra 177 (365)
.|.|+.. .+|.+..+|.+++..+...+++++|..+++.++...| +...+|+..+-++.+.+....+.-+ ++
T Consensus 17 ~~~r~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P-----~~i~~yy~~G~l~~q~~~~~~~~lv--~~ 89 (906)
T PRK14720 17 KWTRADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHK-----KSISALYISGILSLSRRPLNDSNLL--NL 89 (906)
T ss_pred hhhhcccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-----cceehHHHHHHHHHhhcchhhhhhh--hh
Confidence 3555543 4699999999999999999999999999999999888 6677888777777777665554444 33
Q ss_pred HHcC--------------------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCh
Q psy17788 178 VRCN--------------------DETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQK 237 (365)
Q Consensus 178 l~~~--------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~ 237 (365)
+... .+..++..+|.+|.+.|+.++|..+|+++++.. |.++.+...||-+|... ++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D---~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD---RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHh-hH
Confidence 3332 233688889999999999999999999999998 99999999999999998 99
Q ss_pred HHHHHHHHHHHhc
Q psy17788 238 DTARHILQRGLNN 250 (365)
Q Consensus 238 ~~A~~~l~ral~~ 250 (365)
++|+.++.+|+..
T Consensus 166 ~KA~~m~~KAV~~ 178 (906)
T PRK14720 166 EKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998875
No 88
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.36 E-value=2.4e-11 Score=99.89 Aligned_cols=123 Identities=7% Similarity=-0.094 Sum_probs=93.1
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy17788 99 DGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAV 178 (365)
Q Consensus 99 ~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral 178 (365)
..|++++..+|++ |..++..+.+.|++++|...|++++...| .+..+|..++.+....|+++.|...|.+++
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P-----~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQP-----WSWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5678888888875 55667777788888888888888888777 567778888887777888888888888888
Q ss_pred HcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q psy17788 179 RCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLL 232 (365)
Q Consensus 179 ~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~ 232 (365)
..+|. ..+|+.++.++...|++++|+..|++++... |.++..|...+.+..
T Consensus 86 ~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~---p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 86 MLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS---YADASWSEIRQNAQI 137 (144)
T ss_pred hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHH
Confidence 77774 4577777777777888888888888887777 777777766665544
No 89
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.35 E-value=5.9e-11 Score=102.89 Aligned_cols=119 Identities=8% Similarity=0.054 Sum_probs=105.7
Q ss_pred hCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHH-HHcCC--H
Q psy17788 197 SAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAE-NKFGD--A 273 (365)
Q Consensus 197 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~-~~~g~--~ 273 (365)
.++.+++...++++++.. |.+...|..+|.++...|+++.|...|++++...|++ ..++..+|.++ ...|+ .
T Consensus 52 ~~~~~~~i~~l~~~L~~~---P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~--~~~~~~lA~aL~~~~g~~~~ 126 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN---PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGEN--AELYAALATVLYYQAGQHMT 126 (198)
T ss_pred chhHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCCCCc
Confidence 566788888999999988 9999999999999999999999999999999999985 56777888864 67777 5
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788 274 SRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ 320 (365)
Q Consensus 274 e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~ 320 (365)
++|+.+|++++..+|++..+++.++..+...|++++|+..|++++..
T Consensus 127 ~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 127 PQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 89999999999999999999999999999999999999999999984
No 90
>KOG3060|consensus
Probab=99.35 E-value=5.9e-10 Score=96.49 Aligned_cols=186 Identities=11% Similarity=0.070 Sum_probs=151.0
Q ss_pred CHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChH
Q psy17788 166 TKESLQECLHEAVRCNDE-------TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKD 238 (365)
Q Consensus 166 ~~~~a~~v~~ral~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~ 238 (365)
+.+++.+++...+...+. ..++-.++-.-...|+..-|..+++++-..| |.+..+-...|.++...|.++
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f---p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF---PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC---CCChhHHHHHHHHHHHhhchh
Confidence 456666666665544332 1344444555667899999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy17788 239 TARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAV 318 (365)
Q Consensus 239 ~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral 318 (365)
+|..+|++.|+.+|.+.. ++.+-..+..-.|..-.|+.-+...++.+|.+.++|..++++|...|++..|.-+||.++
T Consensus 104 ~A~e~y~~lL~ddpt~~v--~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDTV--IRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccCcchhH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 999999999999998643 334445556678888899999999999999999999999999999999999999999998
Q ss_pred hCCCCCCCcHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHH
Q psy17788 319 TQKLPPKKLKPLYMKWLKLEEQYG---DAEAVENVKKEIEQYVR 359 (365)
Q Consensus 319 ~~~l~~~~~~~~~~~~l~~e~~~G---~~~~a~~v~~kA~~~v~ 359 (365)
-. .|.+...+.+|.+.....| +.+.++..|.+|++..+
T Consensus 182 l~---~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 182 LI---QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred Hc---CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 73 4568889999999876666 55678888999988665
No 91
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.34 E-value=1.3e-10 Score=100.80 Aligned_cols=125 Identities=20% Similarity=0.235 Sum_probs=111.6
Q ss_pred hCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH-HHcCC--hHH
Q psy17788 164 YGTKESLQECLHEAVRCND-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLL-LRLGQ--KDT 239 (365)
Q Consensus 164 ~g~~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~-~~~g~--~~~ 239 (365)
.++.+.+...++++++.+| +...|..++.+|...|++++|...|+++++.. |.++.++..+|.++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~---P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR---GENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 4466888999999999987 45799999999999999999999999999998 99999999999975 67777 599
Q ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q psy17788 240 ARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDV 293 (365)
Q Consensus 240 A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~ 293 (365)
|+.+++++++..|++ +.++..+|..+++.|++++|+..|+++++..|.+.+-
T Consensus 129 A~~~l~~al~~dP~~--~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 129 TREMIDKALALDANE--VTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred HHHHHHHHHHhCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 999999999999995 5677888999999999999999999999999886543
No 92
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.34 E-value=1.5e-10 Score=117.36 Aligned_cols=165 Identities=7% Similarity=0.044 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHH---HHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHH
Q psy17788 186 VYMNMMEIYAASAQIRDLESTVK---LLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITR 262 (365)
Q Consensus 186 ~~~~l~~~~~~~g~~~~A~~~~~---~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~ 262 (365)
++.++-++..++|....+...+- ..+..+ +.++.++..+|.+..+.|.+++|..+++++++..|.+ +.....
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~--~~a~~~ 125 (694)
T PRK15179 51 LLQQARQVLERHAAVHKPAAALPELLDYVRRY---PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS--SEAFIL 125 (694)
T ss_pred HHHHHHHHHHHhhhhcchHhhHHHHHHHHHhc---cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc--HHHHHH
Confidence 33344444555555444443333 334556 8899999999999999999999999999999999995 667788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcC
Q psy17788 263 FALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYG 342 (365)
Q Consensus 263 ~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G 342 (365)
++.++.+.+.+++|...+++++...|++......++.++...|++++|..+|++++. +.+.....|..|....+..|
T Consensus 126 ~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~---~~p~~~~~~~~~a~~l~~~G 202 (694)
T PRK15179 126 MLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSR---QHPEFENGYVGWAQSLTRRG 202 (694)
T ss_pred HHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHcC
Confidence 899999999999999999999999999999999999999999999999999999997 34457889999999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q psy17788 343 DAEAVENVKKEIEQYV 358 (365)
Q Consensus 343 ~~~~a~~v~~kA~~~v 358 (365)
+.+.|...|.+|++..
T Consensus 203 ~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 203 ALWRARDVLQAGLDAI 218 (694)
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999998753
No 93
>KOG1128|consensus
Probab=99.34 E-value=6.1e-11 Score=115.61 Aligned_cols=221 Identities=13% Similarity=0.148 Sum_probs=183.2
Q ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Q psy17788 113 ELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMME 192 (365)
Q Consensus 113 ~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~~~l~~ 192 (365)
.+-..++..+++.|-...|..+|+| ...|-..+.+|...|+..+|..+..+-++..|....|..+++
T Consensus 399 q~q~~laell~slGitksAl~I~Er-------------lemw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGD 465 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFER-------------LEMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGD 465 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHh-------------HHHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhh
Confidence 3445777888888888888877764 356888999999999999999999999986666777777787
Q ss_pred HHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCC
Q psy17788 193 IYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGD 272 (365)
Q Consensus 193 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~ 272 (365)
+..+.--+++|.++++ ..+..+...+|...++.++++++...|++.+...|-. ...|+.+|.+..+.++
T Consensus 466 v~~d~s~yEkawElsn---------~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq--~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSN---------YISARAQRSLALLILSNKDFSEADKHLERSLEINPLQ--LGTWFGLGCAALQLEK 534 (777)
T ss_pred hccChHHHHHHHHHhh---------hhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccc--hhHHHhccHHHHHHhh
Confidence 7655444455544443 2345566777777888999999999999999999995 6788999999999999
Q ss_pred HHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy17788 273 ASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKK 352 (365)
Q Consensus 273 ~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~ 352 (365)
+..|...|.+.+...|++...|+++...|+++|+..+|+..+.+|++-+ ..+-.+|..|.-.-...|..+.|...++
T Consensus 535 ~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn---~~~w~iWENymlvsvdvge~eda~~A~~ 611 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN---YQHWQIWENYMLVSVDVGEFEDAIKAYH 611 (777)
T ss_pred hHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC---CCCCeeeechhhhhhhcccHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999743 3455789999999999999999999999
Q ss_pred HHHHHHHh
Q psy17788 353 EIEQYVRN 360 (365)
Q Consensus 353 kA~~~v~~ 360 (365)
+.+..=..
T Consensus 612 rll~~~~~ 619 (777)
T KOG1128|consen 612 RLLDLRKK 619 (777)
T ss_pred HHHHhhhh
Confidence 98775443
No 94
>KOG2396|consensus
Probab=99.30 E-value=1.7e-09 Score=101.65 Aligned_cols=98 Identities=13% Similarity=0.176 Sum_probs=83.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc--CChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHH
Q psy17788 261 TRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKS--DRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLE 338 (365)
Q Consensus 261 ~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~--g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e 338 (365)
..+..+..+.|-...|+..|.+....-|-+.+++...++++... -+...+|.+|++|+. .+ .....+|..|+.+|
T Consensus 464 s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~-~f--g~d~~lw~~y~~~e 540 (568)
T KOG2396|consen 464 SKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALR-EF--GADSDLWMDYMKEE 540 (568)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHH-Hh--CCChHHHHHHHHhh
Confidence 44455666778889999999999999999999999999988543 238889999999998 33 35779999999999
Q ss_pred HhcCCHHHHHHHHHHHHHHHHhh
Q psy17788 339 EQYGDAEAVENVKKEIEQYVRNS 361 (365)
Q Consensus 339 ~~~G~~~~a~~v~~kA~~~v~~~ 361 (365)
..+|..+.+-.++.||+..++.+
T Consensus 541 ~~~g~~en~~~~~~ra~ktl~~~ 563 (568)
T KOG2396|consen 541 LPLGRPENCGQIYWRAMKTLQGE 563 (568)
T ss_pred ccCCCcccccHHHHHHHHhhChh
Confidence 99999999999999999987754
No 95
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.28 E-value=5e-10 Score=114.73 Aligned_cols=245 Identities=9% Similarity=0.041 Sum_probs=170.9
Q ss_pred HHHHHhc-CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCcc--------------ccc
Q psy17788 85 AEDELLQ-NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRN--------------EED 149 (365)
Q Consensus 85 ~e~~l~~-~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~--------------~~~ 149 (365)
+-..... ++..+++...+.++..+|++..+|+..|..+.+.++.+.+..+ +++..++... ..+
T Consensus 37 Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~ 114 (906)
T PRK14720 37 LIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGE 114 (906)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhh
Confidence 3344434 4555899999999999999999999999999999998888877 7777666431 012
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCC---cHHHHH
Q psy17788 150 RLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHS---SVNIYL 225 (365)
Q Consensus 150 ~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~ 225 (365)
+..+.+.++.++...|..+++..+|+++++.+|. ..+...+|..|... +.++|++++.+++..+....+ -..+|.
T Consensus 115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~ 193 (906)
T PRK14720 115 NKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWS 193 (906)
T ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHH
Confidence 2367888899999999999999999999999985 56889999999999 999999999999987621111 122344
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc-
Q psy17788 226 QCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKS- 304 (365)
Q Consensus 226 ~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~- 304 (365)
.+...- .-+++.-..+.++.+.......-+.++.-+-..+...++++++..+|..+|...|++..+...+++||.+.
T Consensus 194 k~~~~~--~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY 271 (906)
T PRK14720 194 KLVHYN--SDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEKY 271 (906)
T ss_pred HHHhcC--cccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHc
Confidence 333221 12333344444444444332223445555557778889999999999999999999999999999999743
Q ss_pred CChHHHHHHHHHHHhC-CCCCCCcHHHHHHHHHHHH
Q psy17788 305 DRVDLGRQVIQRAVTQ-KLPPKKLKPLYMKWLKLEE 339 (365)
Q Consensus 305 g~~~~Ar~~~eral~~-~l~~~~~~~~~~~~l~~e~ 339 (365)
++ ...|+..+.. .+. +..+.+...+.+||+
T Consensus 272 ~~----~~~~ee~l~~s~l~-~~~~~~~~~i~~fek 302 (906)
T PRK14720 272 KD----HSLLEDYLKMSDIG-NNRKPVKDCIADFEK 302 (906)
T ss_pred cC----cchHHHHHHHhccc-cCCccHHHHHHHHHH
Confidence 22 3344444431 122 222444555555554
No 96
>KOG1174|consensus
Probab=99.28 E-value=9.6e-10 Score=101.04 Aligned_cols=220 Identities=13% Similarity=0.127 Sum_probs=187.7
Q ss_pred CCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HHHHH
Q psy17788 110 NNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-TKVYM 188 (365)
Q Consensus 110 ~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~~ 188 (365)
....-|+--+.......++..|..+.++++...| .+...++.-+++....|..+.|.-.|+.|....|+ ..+|.
T Consensus 298 ~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-----r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~ 372 (564)
T KOG1174|consen 298 YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-----RNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYR 372 (564)
T ss_pred cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-----ccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHH
Confidence 3445566666667778899999999999999888 66788888889999999999999999999999985 47999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHH-HHHHHc-CChHHHHHHHHHHHhcCCCcchHHHHHHHHHH
Q psy17788 189 NMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCA-TLLLRL-GQKDTARHILQRGLNNLPPAVHVTLITRFALA 266 (365)
Q Consensus 189 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a-~~~~~~-g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~ 266 (365)
.++..|...|++.+|.-.-+.+++.+ +++.+....+| .++.-. -.-++|..+++++|...|.. +......|.+
T Consensus 373 GL~hsYLA~~~~kEA~~~An~~~~~~---~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y--~~AV~~~AEL 447 (564)
T KOG1174|consen 373 GLFHSYLAQKRFKEANALANWTIRLF---QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIY--TPAVNLIAEL 447 (564)
T ss_pred HHHHHHHhhchHHHHHHHHHHHHHHh---hcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCcc--HHHHHHHHHH
Confidence 99999999999999999999999999 99999998886 444432 23488999999999999995 5666777999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCC
Q psy17788 267 ENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGD 343 (365)
Q Consensus 267 ~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~ 343 (365)
+...|..+.++.++++.|..+|+ ..++..+++++...+.+.+|...|..|+.+ +|+.+...+..-.+|+...+
T Consensus 448 ~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~---dP~~~~sl~Gl~~lEK~~~~ 520 (564)
T KOG1174|consen 448 CQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQ---DPKSKRTLRGLRLLEKSDDE 520 (564)
T ss_pred HHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---CccchHHHHHHHHHHhccCC
Confidence 99999999999999999999998 578999999999999999999999999985 34566666776667776543
No 97
>KOG1128|consensus
Probab=99.27 E-value=3.1e-10 Score=110.78 Aligned_cols=205 Identities=14% Similarity=0.159 Sum_probs=171.8
Q ss_pred CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788 92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ 171 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~ 171 (365)
+-..+|+.+|||+ ..|-..+.+|...|+..+|..+..+-++ .| ....+|..++++-...--+++|.
T Consensus 412 GitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~-----~d~~lyc~LGDv~~d~s~yEkaw 477 (777)
T KOG1128|consen 412 GITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KD-----PDPRLYCLLGDVLHDPSLYEKAW 477 (777)
T ss_pred chHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CC-----CcchhHHHhhhhccChHHHHHHH
Confidence 4444567777776 8999999999999999999999999888 34 23456666666654443445555
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q psy17788 172 ECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNL 251 (365)
Q Consensus 172 ~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~ 251 (365)
+++..- +..+...++......+++.++...++..++.. |-...+|+.+|-+..+.+++..|...|.+++...
T Consensus 478 Elsn~~-----sarA~r~~~~~~~~~~~fs~~~~hle~sl~~n---plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~ 549 (777)
T KOG1128|consen 478 ELSNYI-----SARAQRSLALLILSNKDFSEADKHLERSLEIN---PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE 549 (777)
T ss_pred HHhhhh-----hHHHHHhhccccccchhHHHHHHHHHHHhhcC---ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC
Confidence 554432 23345556666666899999999999999998 9999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788 252 PPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ 320 (365)
Q Consensus 252 p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~ 320 (365)
|+ +...|..++..+.+.|...+|...+..+++.+-++..+|-+|.-+..+.|.++.|...|.|.+..
T Consensus 550 Pd--~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 550 PD--NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred CC--chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 99 47788999999999999999999999999999999999999999999999999999999999974
No 98
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=99.26 E-value=6.1e-10 Score=103.31 Aligned_cols=241 Identities=18% Similarity=0.252 Sum_probs=162.9
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy17788 100 GFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVR 179 (365)
Q Consensus 100 ~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~ 179 (365)
+|++++...|-.+.+|+.|-.+.+..++-++|..+.+|++...| .+-+.|...+..-.+.+.+..+|+.+++
T Consensus 290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sp--------sL~~~lse~yel~nd~e~v~~~fdk~~q 361 (660)
T COG5107 290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSP--------SLTMFLSEYYELVNDEEAVYGCFDKCTQ 361 (660)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCC--------chheeHHHHHhhcccHHHHhhhHHHHHH
Confidence 46666666677777777777766767766667766666666544 2444455555544555555555555443
Q ss_pred cCCCHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcch
Q psy17788 180 CNDETKVYMNMMEIYAA---SAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVH 256 (365)
Q Consensus 180 ~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~ 256 (365)
.-- .- ...+..-.. .|+++...+++ ++.- ..-.-+|..+...-.+....+.|+.+|-++-+.--..++
T Consensus 362 ~L~--r~-ys~~~s~~~s~~D~N~e~~~Ell---~kr~---~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~ 432 (660)
T COG5107 362 DLK--RK-YSMGESESASKVDNNFEYSKELL---LKRI---NKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHH 432 (660)
T ss_pred HHH--HH-HhhhhhhhhccccCCccccHHHH---HHHH---hhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcc
Confidence 100 00 000111111 12332222222 1221 234557888888888888899999999998765423335
Q ss_pred HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHH
Q psy17788 257 VTLITRFALAENK-FGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWL 335 (365)
Q Consensus 257 ~~~~~~~a~~~~~-~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l 335 (365)
+-+.. |-+++. .|++.-|..+|+-.+..+|+.+-.-..|.++++..|+-..||.+|+.++. ++.....+.+|.+|+
T Consensus 433 vyi~~--A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~-r~~~~q~k~iy~kmi 509 (660)
T COG5107 433 VYIYC--AFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVE-RLEKTQLKRIYDKMI 509 (660)
T ss_pred eeeeH--HHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHH-HHHHhhhhHHHHHHH
Confidence 54444 555444 68999999999999999999999999999999999999999999998887 444445688999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHh
Q psy17788 336 KLEEQYGDAEAVENVKKEIEQYVRN 360 (365)
Q Consensus 336 ~~e~~~G~~~~a~~v~~kA~~~v~~ 360 (365)
++|-+.|+...|..+-++-.+.|+.
T Consensus 510 ~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 510 EYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHhhcchHHHHhHHHHHHHHcCc
Confidence 9999999999888887777766653
No 99
>KOG0548|consensus
Probab=99.24 E-value=5.1e-09 Score=99.33 Aligned_cols=261 Identities=11% Similarity=0.022 Sum_probs=178.1
Q ss_pred CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788 92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ 171 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~ 171 (365)
++...++..|..++..+|.+..++-.....|...|++++|..-..+++...| .+...|...+....-.|+++.|+
T Consensus 16 ~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p-----~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 16 GDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNP-----DWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred ccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCC-----chhhHHHHhHHHHHhcccHHHHH
Confidence 5666777888888888887777777777777777777777777777777667 67777777777666777777777
Q ss_pred HHHHHHHHcCCCHHHH-HHH------------------------------------------------------------
Q psy17788 172 ECLHEAVRCNDETKVY-MNM------------------------------------------------------------ 190 (365)
Q Consensus 172 ~v~~ral~~~~~~~~~-~~l------------------------------------------------------------ 190 (365)
.-|...|...|+.... ..+
T Consensus 91 ~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r 170 (539)
T KOG0548|consen 91 LAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPR 170 (539)
T ss_pred HHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHH
Confidence 7777776665532211 111
Q ss_pred ------------------------------------------------------------HHHHHHhCCHHHHHHHHHHH
Q psy17788 191 ------------------------------------------------------------MEIYAASAQIRDLESTVKLL 210 (365)
Q Consensus 191 ------------------------------------------------------------~~~~~~~g~~~~A~~~~~~a 210 (365)
++...+..++..|++.|..+
T Consensus 171 ~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a 250 (539)
T KOG0548|consen 171 LMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKA 250 (539)
T ss_pred HHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 11111233455555555555
Q ss_pred HHHhcCC------------------------------CC-------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q psy17788 211 LKKAGQT------------------------------HS-------SVNIYLQCATLLLRLGQKDTARHILQRGLNNLPP 253 (365)
Q Consensus 211 l~~~~~~------------------------------~~-------~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~ 253 (365)
+...... .. -......+|..+...++++.|+.+|+++|...-.
T Consensus 251 ~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt 330 (539)
T KOG0548|consen 251 LELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT 330 (539)
T ss_pred HhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC
Confidence 5442000 00 0111222333455567788888889888765432
Q ss_pred cc------------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHH
Q psy17788 254 AV------------------------HVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDL 309 (365)
Q Consensus 254 ~~------------------------~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~ 309 (365)
.. ...-...-|+..++.|++..|...|.++|..+|++..++.+.+-||.++|.+..
T Consensus 331 ~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~ 410 (539)
T KOG0548|consen 331 PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPE 410 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHH
Confidence 10 011112237778899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q psy17788 310 GRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRN 360 (365)
Q Consensus 310 Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~ 360 (365)
|..--+.++++ .| .....|.+-+.......+++.+...|+.|++.=++
T Consensus 411 aL~Da~~~ieL--~p-~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~ 458 (539)
T KOG0548|consen 411 ALKDAKKCIEL--DP-NFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS 458 (539)
T ss_pred HHHHHHHHHhc--Cc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 99999999985 44 35556666677777788999999999999876443
No 100
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.24 E-value=7.5e-08 Score=88.52 Aligned_cols=258 Identities=16% Similarity=0.121 Sum_probs=192.2
Q ss_pred HhcCCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHH
Q psy17788 89 LLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKE 168 (365)
Q Consensus 89 l~~~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~ 168 (365)
+..|+-++|.....+.-...+...-.++.-+..--+.|+++.|-.+..++-+.-+. ....+.+....+....|++.
T Consensus 95 l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~----~~l~v~ltrarlll~~~d~~ 170 (400)
T COG3071 95 LFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGD----DTLAVELTRARLLLNRRDYP 170 (400)
T ss_pred HhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCC----chHHHHHHHHHHHHhCCCch
Confidence 44466667766666666666666666766677777888888888888888774232 34566777777778888888
Q ss_pred HHHHHHHHHHHcCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcC-------------------------------
Q psy17788 169 SLQECLHEAVRCNDETK-VYMNMMEIYAASAQIRDLESTVKLLLKKAGQ------------------------------- 216 (365)
Q Consensus 169 ~a~~v~~ral~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------------------------------- 216 (365)
.|+.-..+++...|... +..-...+|.+.|.+.....+..++.+....
T Consensus 171 aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~ 250 (400)
T COG3071 171 AARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKT 250 (400)
T ss_pred hHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 88888888888887544 4444577788888777777766665442100
Q ss_pred --------CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17788 217 --------THSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYP 288 (365)
Q Consensus 217 --------~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P 288 (365)
...++.+-..++.-+..+|+.++|..+...+++..-+. .+...++. .+.+++..=....++.++.+|
T Consensus 251 ~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~---~L~~~~~~--l~~~d~~~l~k~~e~~l~~h~ 325 (400)
T COG3071 251 WWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP---RLCRLIPR--LRPGDPEPLIKAAEKWLKQHP 325 (400)
T ss_pred HHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh---hHHHHHhh--cCCCCchHHHHHHHHHHHhCC
Confidence 14567888889999999999999999999988765442 12222222 256888888999999999999
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q psy17788 289 ARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVR 359 (365)
Q Consensus 289 ~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~ 359 (365)
+++.+++.+|..+.+.+.+.+|..+|+.+++. .+ ...-|.-..+...+.|+...+..+++.++-.+.
T Consensus 326 ~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~--s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~ 392 (400)
T COG3071 326 EDPLLLSTLGRLALKNKLWGKASEALEAALKL--RP--SASDYAELADALDQLGEPEEAEQVRREALLLTR 392 (400)
T ss_pred CChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CC--ChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999974 22 234455566666789999999999999985543
No 101
>KOG1156|consensus
Probab=99.23 E-value=9.4e-09 Score=99.38 Aligned_cols=72 Identities=15% Similarity=0.093 Sum_probs=53.2
Q ss_pred CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHH
Q psy17788 92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKE 168 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~ 168 (365)
++..+|......++..++.|...|.-||-.+....++++|+.+|+.||...| ++..+|..+.-+....++++
T Consensus 55 g~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~-----dN~qilrDlslLQ~QmRd~~ 126 (700)
T KOG1156|consen 55 GKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEK-----DNLQILRDLSLLQIQMRDYE 126 (700)
T ss_pred cchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCC-----CcHHHHHHHHHHHHHHHhhh
Confidence 3344666777788888899999999999999999999999999999999777 55566555554444444333
No 102
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.23 E-value=5.6e-10 Score=90.47 Aligned_cols=116 Identities=11% Similarity=0.025 Sum_probs=69.8
Q ss_pred HHHHHHHcCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q psy17788 173 CLHEAVRCNDET-KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNL 251 (365)
Q Consensus 173 v~~ral~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~ 251 (365)
.|++++..+|.. .+...++..+...|++++|...|++++... |.++.+|..+|.++...|++++|..+|++++...
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD---PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455555555533 344555666666666666666666666655 6666666666666666666666666666666666
Q ss_pred CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q psy17788 252 PPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDV 293 (365)
Q Consensus 252 p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~ 293 (365)
|.. ..++...|.++...|+++.|...|++++..+|++...
T Consensus 82 p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 82 PDD--PRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred CCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 553 3344555666666666666666666666666655443
No 103
>KOG4162|consensus
Probab=99.20 E-value=1.2e-08 Score=100.31 Aligned_cols=219 Identities=14% Similarity=0.047 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCCHHHHHH
Q psy17788 128 IEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND--ETKVYMNMMEIYAASAQIRDLES 205 (365)
Q Consensus 128 ~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~--~~~~~~~l~~~~~~~g~~~~A~~ 205 (365)
..++...+++|++..| .++++-+.+.-.+...++.+.|.....+++..++ +...|..++-++...+++..|+.
T Consensus 460 h~kslqale~av~~d~-----~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~ 534 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDP-----TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALD 534 (799)
T ss_pred HHHHHHHHHHHHhcCC-----CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHH
Confidence 4567888999999777 5567777666677778899999999999999965 56789999999999999999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----------------------------------
Q psy17788 206 TVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNN----------------------------------- 250 (365)
Q Consensus 206 ~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~----------------------------------- 250 (365)
+.+.++..+ +.|......-+.+....|+.++|.......|..
T Consensus 535 vvd~al~E~---~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s 611 (799)
T KOG4162|consen 535 VVDAALEEF---GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAIS 611 (799)
T ss_pred HHHHHHHHh---hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccch
Confidence 999999999 665555555555554455544443222221110
Q ss_pred ---------------------CC------Ccc-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHH
Q psy17788 251 ---------------------LP------PAV-----HVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYV 298 (365)
Q Consensus 251 ---------------------~p------~~~-----~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~ 298 (365)
+| ... ...+|...+....+.+..+.|...+..+-..+|-...+|...|
T Consensus 612 ~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G 691 (799)
T KOG4162|consen 612 TSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRG 691 (799)
T ss_pred hhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhh
Confidence 11 111 1346667788889999999999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHH
Q psy17788 299 DMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVEN--VKKEIEQY 357 (365)
Q Consensus 299 ~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~--v~~kA~~~ 357 (365)
.++...|...+|...|.-|+.+ . |....+....+......|+..-+.+ +..-|+++
T Consensus 692 ~~~~~~~~~~EA~~af~~Al~l--d-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~ 749 (799)
T KOG4162|consen 692 LLLEVKGQLEEAKEAFLVALAL--D-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL 749 (799)
T ss_pred HHHHHHHhhHHHHHHHHHHHhc--C-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh
Confidence 9999999999999999999985 3 4466778888888888898887777 77777765
No 104
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.19 E-value=8.2e-10 Score=89.50 Aligned_cols=111 Identities=14% Similarity=0.047 Sum_probs=103.3
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17788 205 STVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTL 284 (365)
Q Consensus 205 ~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l 284 (365)
.+|++++... |.+..+...++..+...|++++|...|++++...|.+ ..++..+|.++...|+++.|..+|++++
T Consensus 4 ~~~~~~l~~~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~ 78 (135)
T TIGR02552 4 ATLKDLLGLD---SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN--SRYWLGLAACCQMLKEYEEAIDAYALAA 78 (135)
T ss_pred hhHHHHHcCC---hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888877 8889999999999999999999999999999999985 5677888999999999999999999999
Q ss_pred HhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788 285 TSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ 320 (365)
Q Consensus 285 ~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~ 320 (365)
..+|.+++.|..++.++...|+.+.|...|++++..
T Consensus 79 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 79 ALDPDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred hcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999984
No 105
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.19 E-value=1e-08 Score=96.49 Aligned_cols=232 Identities=16% Similarity=0.103 Sum_probs=161.9
Q ss_pred HHHHHHHHHHHHHHhc--CCCCCCh-HHHHHHhh--cCCCCHHHHHHHHHHH-HcccCHHHHHHHHHHHHhhccCccccc
Q psy17788 76 KAEEARIRQAEDELLQ--NGEPVSP-DGFDRMLL--GQPNNSELWVKYMAYH-LQATEIEKARSIARRALTVINIRNEED 149 (365)
Q Consensus 76 ~~~e~~~~~~e~~l~~--~~~p~a~-~~fe~~l~--~~p~~~~~w~~~~~~~-~~~~~~e~A~~~~~raL~~~p~~~~~~ 149 (365)
+++|.+-.+..-..+. +..|.+. ..|+|+-. ..-..+. .|...| +-..++..++. |+.. .|.....+
T Consensus 198 R~~E~eADr~Gi~~L~raGydp~gM~~ff~rl~~~~~~~~~~p---~yl~THPlp~~RIa~lr~---ra~q-~p~~~~~d 270 (484)
T COG4783 198 RQNEQEADRIGITTLVRAGYDPQGMPEFFERLADQLRYGGQPP---EYLLTHPLPEERIADLRN---RAEQ-SPPYNKLD 270 (484)
T ss_pred hhhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcCCCCC---hHHhcCCCchhHHHHHHH---HHHh-CCCCCCCC
Confidence 3455555566544444 8888665 66777753 1111111 122223 33344444443 4444 33332223
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Q psy17788 150 RLNVWTSLLNLEHLYGTKESLQECLHEAVRCND-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCA 228 (365)
Q Consensus 150 ~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a 228 (365)
.......-..+-..+..+......--++....| ....++..+..+...|.+++|+..++.+++.. |+|+..|...+
T Consensus 271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~---P~N~~~~~~~~ 347 (484)
T COG4783 271 SPDFQLARARIRAKYEALPNQQAADLLAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ---PDNPYYLELAG 347 (484)
T ss_pred CccHHHHHHHHHHHhccccccchHHHHHHHhCccchHHHHHHHHHHHHhcccchHHHHHHHHHHhC---CCCHHHHHHHH
Confidence 344444434333333222211111111112222 45677888888889999999999999999998 99999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChH
Q psy17788 229 TLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVD 308 (365)
Q Consensus 229 ~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~ 308 (365)
+++...|+..+|.+.+++++...|.. ..+...+|+.+.+.|++.+|+.++.+.+..+|+++..|..++..|...|+..
T Consensus 348 ~i~~~~nk~~~A~e~~~kal~l~P~~--~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~ 425 (484)
T COG4783 348 DILLEANKAKEAIERLKKALALDPNS--PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRA 425 (484)
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCCc--cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchH
Confidence 99999999999999999999999996 4566788999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHh
Q psy17788 309 LGRQVIQRAVT 319 (365)
Q Consensus 309 ~Ar~~~eral~ 319 (365)
++...+-....
T Consensus 426 ~a~~A~AE~~~ 436 (484)
T COG4783 426 EALLARAEGYA 436 (484)
T ss_pred HHHHHHHHHHH
Confidence 88887777765
No 106
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.19 E-value=3.5e-09 Score=92.39 Aligned_cols=177 Identities=12% Similarity=0.110 Sum_probs=142.2
Q ss_pred ChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy17788 97 SPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHE 176 (365)
Q Consensus 97 a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~r 176 (365)
+...+-+....+|++..+ ..+...+...|+-+.+..+...++...| ....+..+++....+.|++..|..+|.+
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~-----~d~~ll~~~gk~~~~~g~~~~A~~~~rk 125 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYP-----KDRELLAAQGKNQIRNGNFGEAVSVLRK 125 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCc-----ccHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 445566677778888888 8888888888888888777777666566 4456777788888888899999999999
Q ss_pred HHHcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc
Q psy17788 177 AVRCND-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV 255 (365)
Q Consensus 177 al~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~ 255 (365)
+....| +..+|..++-+|.+.|+++.|+..|.++++.+ +.++.+..+++..++-.|+++.|+.++.++...-+.+
T Consensus 126 A~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~---~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad- 201 (257)
T COG5010 126 AARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELA---PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAAD- 201 (257)
T ss_pred HhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc---cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCc-
Confidence 988877 45788888889999999999999999999988 8888999999999999999999999988888766654
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17788 256 HVTLITRFALAENKFGDASRAQALLEHTL 284 (365)
Q Consensus 256 ~~~~~~~~a~~~~~~g~~e~A~~~fe~~l 284 (365)
..+...++......|+++.|..+-..-+
T Consensus 202 -~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 202 -SRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred -hHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 4566777888888888888877765443
No 107
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.18 E-value=2.1e-08 Score=98.52 Aligned_cols=246 Identities=14% Similarity=0.147 Sum_probs=123.8
Q ss_pred CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHh-----CC
Q psy17788 92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLY-----GT 166 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~-----g~ 166 (365)
+...+|.+.++..-..-++...+.-..+.++++.|+.++|..+|+..|...| ++......|..+.... ..
T Consensus 18 g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-----dn~~Yy~~L~~~~g~~~~~~~~~ 92 (517)
T PF12569_consen 18 GDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-----DNYDYYRGLEEALGLQLQLSDED 92 (517)
T ss_pred CCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-----CcHHHHHHHHHHHhhhccccccc
Confidence 4444777777777666777788888888888888888889988888888888 5566666666554222 24
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHH
Q psy17788 167 KESLQECLHEAVRCNDETKVYMNMMEIYAASAQIR-DLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQ 245 (365)
Q Consensus 167 ~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ 245 (365)
.+....+|++....+|...+...+.-.+.....|. .+...+...+. ..-|.++..+-.+|....+..-...++.
T Consensus 93 ~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~-----KgvPslF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 93 VEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLR-----KGVPSLFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred HHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHh-----cCCchHHHHHHHHHcChhHHHHHHHHHH
Confidence 56677777777666663332222211111111111 12222222222 1233344444333332222222222222
Q ss_pred HHHhcC---------------CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHH
Q psy17788 246 RGLNNL---------------PPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLG 310 (365)
Q Consensus 246 ral~~~---------------p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~A 310 (365)
..+... |....+++++.+|+.+...|++++|..+.+++|...|..++++..-+.++.+.|++.+|
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~A 247 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEA 247 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 222110 00001333444455555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q psy17788 311 RQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENV 350 (365)
Q Consensus 311 r~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v 350 (365)
-..++.|..+.+ ....+-.+.+-+....|..+.|+.+
T Consensus 248 a~~~~~Ar~LD~---~DRyiNsK~aKy~LRa~~~e~A~~~ 284 (517)
T PF12569_consen 248 AEAMDEARELDL---ADRYINSKCAKYLLRAGRIEEAEKT 284 (517)
T ss_pred HHHHHHHHhCCh---hhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 555555554322 2234444444444445555544443
No 108
>KOG0624|consensus
Probab=99.17 E-value=2e-08 Score=90.62 Aligned_cols=221 Identities=13% Similarity=0.097 Sum_probs=177.8
Q ss_pred CCCCCChHHHHHHhhcCCCCH---H----------HHH--HHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHH
Q psy17788 92 NGEPVSPDGFDRMLLGQPNNS---E----------LWV--KYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTS 156 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~~~p~~~---~----------~w~--~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~ 156 (365)
+...+|.++|..+|..+|++. . -|. .-+......|+...|+......|.+.|. ...+...
T Consensus 120 Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W-----da~l~~~ 194 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW-----DASLRQA 194 (504)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc-----hhHHHHH
Confidence 677799999999999999643 1 222 2222234668899999999999998884 3566777
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH-----
Q psy17788 157 LLNLEHLYGTKESLQECLHEAVRCN-DETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATL----- 230 (365)
Q Consensus 157 ~~~l~~~~g~~~~a~~v~~ral~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~----- 230 (365)
.+.++...|....|+.-++.+-+.. ++...++.+..++...|+.+.+....+..++.. |.....+..|-.+
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld---pdHK~Cf~~YKklkKv~K 271 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD---PDHKLCFPFYKKLKKVVK 271 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC---cchhhHHHHHHHHHHHHH
Confidence 7788899999999999999987765 466788999999999999999999999999987 6665554444222
Q ss_pred -------HHHcCChHHHHHHHHHHHhcCCCcchH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q psy17788 231 -------LLRLGQKDTARHILQRGLNNLPPAVHV--TLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDML 301 (365)
Q Consensus 231 -------~~~~g~~~~A~~~l~ral~~~p~~~~~--~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~ 301 (365)
....+.+.++..-.++.++..|....+ .....+..|+..-|.+.+|+.....+|...|++++++...++.|
T Consensus 272 ~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~ 351 (504)
T KOG0624|consen 272 SLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAY 351 (504)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 344578888999999999988874332 33444566777889999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhC
Q psy17788 302 VKSDRVDLGRQVIQRAVTQ 320 (365)
Q Consensus 302 ~~~g~~~~Ar~~~eral~~ 320 (365)
+....++.|+.-|+.|+..
T Consensus 352 l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 352 LGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred hhhHHHHHHHHHHHHHHhc
Confidence 9999999999999999985
No 109
>KOG0548|consensus
Probab=99.15 E-value=1.4e-08 Score=96.29 Aligned_cols=220 Identities=11% Similarity=0.071 Sum_probs=153.8
Q ss_pred CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHH-HHHH---HHHHHHHhCCH
Q psy17788 92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLN-VWTS---LLNLEHLYGTK 167 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~-~w~~---~~~l~~~~g~~ 167 (365)
...+.++..|..++..+ .+.......+..++..|.+...+.....+++..- +.....+ +-.. .++.+...+++
T Consensus 238 k~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr--e~rad~klIak~~~r~g~a~~k~~~~ 314 (539)
T KOG0548|consen 238 KDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR--ELRADYKLIAKALARLGNAYTKREDY 314 (539)
T ss_pred hhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH--HHHHHHHHHHHHHHHhhhhhhhHHhH
Confidence 55558899999999999 8888889999999999999999998888877322 1000111 1111 22234445678
Q ss_pred HHHHHHHHHHHHcCCCHHHHHH---------------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCCCc
Q psy17788 168 ESLQECLHEAVRCNDETKVYMN---------------------------MMEIYAASAQIRDLESTVKLLLKKAGQTHSS 220 (365)
Q Consensus 168 ~~a~~v~~ral~~~~~~~~~~~---------------------------l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 220 (365)
+.++..|++++.....+.+... -++-+.+.|++..|+..|.+++++. |.+
T Consensus 315 ~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~---P~D 391 (539)
T KOG0548|consen 315 EGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD---PED 391 (539)
T ss_pred HHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC---Cch
Confidence 8899999998866543221111 1334556777888888888888777 778
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q psy17788 221 VNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDM 300 (365)
Q Consensus 221 ~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~ 300 (365)
+.+|.+.|.+|.+.|.+..|+.-.+.+++.+|+. +..|.+=|.+++...+++.|...|+.+++.+|++..+...|.+|
T Consensus 392 a~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~--~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc 469 (539)
T KOG0548|consen 392 ARLYSNRAACYLKLGEYPEALKDAKKCIELDPNF--IKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRC 469 (539)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 8888888888888888888887777888777774 55666667777777788888888888888888877777777777
Q ss_pred HHhcCChHHHHHHHHHHHh
Q psy17788 301 LVKSDRVDLGRQVIQRAVT 319 (365)
Q Consensus 301 ~~~~g~~~~Ar~~~eral~ 319 (365)
.........-..+++|+..
T Consensus 470 ~~a~~~~~~~ee~~~r~~~ 488 (539)
T KOG0548|consen 470 VEAQRGDETPEETKRRAMA 488 (539)
T ss_pred HHHhhcCCCHHHHHHhhcc
Confidence 7654334444556666553
No 110
>KOG0550|consensus
Probab=99.15 E-value=1.9e-09 Score=99.09 Aligned_cols=254 Identities=13% Similarity=0.026 Sum_probs=163.4
Q ss_pred CCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHH
Q psy17788 94 EPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQEC 173 (365)
Q Consensus 94 ~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v 173 (365)
-.+++..|..++...|+++..|-..+..++..++++.|..-++..+...|.. ........+++...+...+|...
T Consensus 65 Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~-----~k~~~r~~~c~~a~~~~i~A~~~ 139 (486)
T KOG0550|consen 65 YGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGF-----SKGQLREGQCHLALSDLIEAEEK 139 (486)
T ss_pred HHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCc-----cccccchhhhhhhhHHHHHHHHH
Confidence 3367888999999999999999999999999999999999999998866632 22222222233222222222222
Q ss_pred ---------------HHHHHHcCC-CH--HHH-HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHc
Q psy17788 174 ---------------LHEAVRCND-ET--KVY-MNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRL 234 (365)
Q Consensus 174 ---------------~~ral~~~~-~~--~~~-~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~ 234 (365)
+++.+..+. .+ .-| ..-+.++.-.|++++|.+.--..++.. +.+......-+.+++..
T Consensus 140 ~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~ 216 (486)
T KOG0550|consen 140 LKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYN 216 (486)
T ss_pred hhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccc
Confidence 222222111 11 122 223667777788888887777777776 77777777777777777
Q ss_pred CChHHHHHHHHHHHhcCCCcch----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh----hHHHHHHHH
Q psy17788 235 GQKDTARHILQRGLNNLPPAVH----------VTLITRFALAENKFGDASRAQALLEHTLTSYPARV----DVWGVYVDM 300 (365)
Q Consensus 235 g~~~~A~~~l~ral~~~p~~~~----------~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~----~~w~~~~~~ 300 (365)
++.+.|...|+++|...|.+.. ..++..-|+-.++.|++..|...|..+|.++|++. .++...+.+
T Consensus 217 ~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v 296 (486)
T KOG0550|consen 217 DNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALV 296 (486)
T ss_pred cchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhh
Confidence 7777777777887777776432 33444556666777777777777877777777663 345555666
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy17788 301 LVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYV 358 (365)
Q Consensus 301 ~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v 358 (365)
.+++|+..+|...-++|+.+ .+...+ .+.+-..-..-.|+++.+...+++|++.-
T Consensus 297 ~~rLgrl~eaisdc~~Al~i--D~syik-all~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 297 NIRLGRLREAISDCNEALKI--DSSYIK-ALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred hcccCCchhhhhhhhhhhhc--CHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 77777777777777777753 222222 22222233334566677777777776643
No 111
>KOG1127|consensus
Probab=99.14 E-value=1.5e-09 Score=109.09 Aligned_cols=218 Identities=9% Similarity=0.045 Sum_probs=182.6
Q ss_pred CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788 92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ 171 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~ 171 (365)
.+...+...|=+++..+|+-..+|.-+|.+|....+...|+.+|++|....+ .....|-+.+..+....+.+.|.
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-----tdaeaaaa~adtyae~~~we~a~ 546 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-----TDAEAAAASADTYAEESTWEEAF 546 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----hhhhhHHHHHHHhhccccHHHHH
Confidence 3344677889999999999999999999999998899999999999999888 67889999999999999999999
Q ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy17788 172 ECLHEAVRCNDE---TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGL 248 (365)
Q Consensus 172 ~v~~ral~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral 248 (365)
.+.-++-+..|- ...|.+.+-+|...+++-.|+.-|+-+++.. |.+...|..+|..|.+.|.+..|.++|.+|.
T Consensus 547 ~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d---PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs 623 (1238)
T KOG1127|consen 547 EICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD---PKDYNLWLGLGEAYPESGRYSHALKVFTKAS 623 (1238)
T ss_pred HHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC---chhHHHHHHHHHHHHhcCceehHHHhhhhhH
Confidence 997777666653 3467778888999999999999999999988 9999999999999999999999999999999
Q ss_pred hcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc-------CChHHHHHHHHHHHh
Q psy17788 249 NNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKS-------DRVDLGRQVIQRAVT 319 (365)
Q Consensus 249 ~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~-------g~~~~Ar~~~eral~ 319 (365)
...|.+.... ++-+.++...|.+..|...++.++........+...++.++++. |=..++..+|++.+.
T Consensus 624 ~LrP~s~y~~--fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie 699 (1238)
T KOG1127|consen 624 LLRPLSKYGR--FKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIE 699 (1238)
T ss_pred hcCcHhHHHH--HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 9999864433 55588899999999999999999987776666666666655543 444445555555443
No 112
>KOG1127|consensus
Probab=99.13 E-value=5.8e-09 Score=104.90 Aligned_cols=187 Identities=13% Similarity=0.060 Sum_probs=160.4
Q ss_pred CCHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHH
Q psy17788 165 GTKESLQECLHEAVRCNDET-KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHI 243 (365)
Q Consensus 165 g~~~~a~~v~~ral~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 243 (365)
.+...+...|-++++..++. .+|..++.+|+..-+..+|.++|.++.... +.+...|-..++.+.+..+.+.|..+
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD---atdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD---ATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---chhhhhHHHHHHHhhccccHHHHHHH
Confidence 45788999999999999875 689999999999999999999999999988 99999999999999999999999999
Q ss_pred HHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q psy17788 244 LQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLP 323 (365)
Q Consensus 244 l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~ 323 (365)
.-++-+..|.....+-|...|-.+.+-++...|+..|+.++..+|+++..|..++..|-..|.+..|.++|.+|..+ .
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--r 626 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--R 626 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--C
Confidence 77777777776666777778888899999999999999999999999999999999999999999999999999975 3
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy17788 324 PKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQY 357 (365)
Q Consensus 324 ~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~ 357 (365)
|...-.-| .-..++.-.|.+..+...+...+..
T Consensus 627 P~s~y~~f-k~A~~ecd~GkYkeald~l~~ii~~ 659 (1238)
T KOG1127|consen 627 PLSKYGRF-KEAVMECDNGKYKEALDALGLIIYA 659 (1238)
T ss_pred cHhHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33211112 2234677789999888877766654
No 113
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.12 E-value=2e-08 Score=87.74 Aligned_cols=159 Identities=15% Similarity=0.121 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q psy17788 151 LNVWTSLLNLEHLYGTKESLQECLHEAVRCND-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCAT 229 (365)
Q Consensus 151 ~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~ 229 (365)
..+ ..+...+...|+-+....+...++-.+| +..+...++....+.|++..|...+.++.... |++..+|..+|-
T Consensus 67 ~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~---p~d~~~~~~lga 142 (257)
T COG5010 67 LSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA---PTDWEAWNLLGA 142 (257)
T ss_pred HHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC---CCChhhhhHHHH
Confidence 344 4444444444444444444444322222 23344445555555555555555555555554 555555555555
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHH
Q psy17788 230 LLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDL 309 (365)
Q Consensus 230 ~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~ 309 (365)
.|.+.|+++.|+.-|.++++..|+.+. ++.++|..+.-.|+++.|++++..+...-+.+..+-..++-.....|++..
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~~~~p~--~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELAPNEPS--IANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhccCCch--hhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHH
Confidence 555555555555555555555555432 334555555555555555555555554444455555555555555555555
Q ss_pred HHHHHH
Q psy17788 310 GRQVIQ 315 (365)
Q Consensus 310 Ar~~~e 315 (365)
|+.+-.
T Consensus 221 A~~i~~ 226 (257)
T COG5010 221 AEDIAV 226 (257)
T ss_pred HHhhcc
Confidence 554433
No 114
>KOG1156|consensus
Probab=99.12 E-value=5.5e-08 Score=94.17 Aligned_cols=220 Identities=15% Similarity=0.099 Sum_probs=169.9
Q ss_pred CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788 92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ 171 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~ 171 (365)
.+-..+....+.+|...|.++...-..|-.+...|+-++|-...++++...+ .+.-.|..++-++..-.++++|+
T Consensus 21 kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-----~S~vCwHv~gl~~R~dK~Y~eai 95 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-----KSHVCWHVLGLLQRSDKKYDEAI 95 (700)
T ss_pred HHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCc-----ccchhHHHHHHHHhhhhhHHHHH
Confidence 4444667778889999999999999999999999999999999999999666 45678999999999999999999
Q ss_pred HHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy17788 172 ECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNN 250 (365)
Q Consensus 172 ~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~ 250 (365)
+.|..|+...|+ ..+|..++-+..+.|+++-....-.+.++.. |.....|+.++..+.-.|++..|..+++.-.+.
T Consensus 96 Kcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~---~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t 172 (700)
T KOG1156|consen 96 KCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR---PSQRASWIGFAVAQHLLGEYKMALEILEEFEKT 172 (700)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999875 5799999999999999999999999999988 999999999999999999999999888776665
Q ss_pred C---CCcc---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788 251 L---PPAV---HVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVT 319 (365)
Q Consensus 251 ~---p~~~---~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~ 319 (365)
. |... +...+..-.....+.|.++.|...+...=...-+....--.-++++++.|++++|..+|.+.+.
T Consensus 173 ~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~ 247 (700)
T KOG1156|consen 173 QNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE 247 (700)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh
Confidence 4 3321 1222233344445566655555444333222223333444556677777777777777777775
No 115
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=99.08 E-value=1.2e-07 Score=88.48 Aligned_cols=163 Identities=13% Similarity=0.143 Sum_probs=114.3
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Q psy17788 101 FDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRC 180 (365)
Q Consensus 101 fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~ 180 (365)
+..-++-+|++...|++++..+..++..++-|++|++.+..+|+- ..+|..|+.-+...+++..+..+|.|+|..
T Consensus 31 LRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~-----~~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 31 LRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIM-----EHAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred HHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccc-----cHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 334467789999999999999999999999999999998888853 578999998888888899999999998876
Q ss_pred CCCHHHHHHHHHHHHHhCCHH--H----HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH---------cCChHHHHHHHH
Q psy17788 181 NDETKVYMNMMEIYAASAQIR--D----LESTVKLLLKKAGQTHSSVNIYLQCATLLLR---------LGQKDTARHILQ 245 (365)
Q Consensus 181 ~~~~~~~~~l~~~~~~~g~~~--~----A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~---------~g~~~~A~~~l~ 245 (365)
.-+..+|..++..-.+.+..- + .-+.|+-.+...+..|.+...|..|+.++.. +.+++..+..|.
T Consensus 106 ~l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ 185 (660)
T COG5107 106 SLNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYM 185 (660)
T ss_pred hccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 666777877776655543211 2 2234444444333347777888888887754 234567778888
Q ss_pred HHHhcCCCcchHHHHHHHHHHHHH
Q psy17788 246 RGLNNLPPAVHVTLITRFALAENK 269 (365)
Q Consensus 246 ral~~~p~~~~~~~~~~~a~~~~~ 269 (365)
|||.. |-..-..+|..|-+++..
T Consensus 186 ral~t-P~~nleklW~dy~~fE~e 208 (660)
T COG5107 186 RALQT-PMGNLEKLWKDYENFELE 208 (660)
T ss_pred HHHcC-ccccHHHHHHHHHHHHHH
Confidence 88753 433344566666655543
No 116
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.02 E-value=3.7e-07 Score=84.03 Aligned_cols=232 Identities=16% Similarity=0.151 Sum_probs=176.0
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCcc-ccch--HHHHHHH
Q psy17788 81 RIRQAEDELLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRN-EEDR--LNVWTSL 157 (365)
Q Consensus 81 ~~~~~e~~l~~~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~-~~~~--~~~w~~~ 157 (365)
+|.+.+-.+.+++.|.+.....+++...|.++.+.--...+|.+.|+......+....-+..-..+ +... ...|.++
T Consensus 156 ~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~gl 235 (400)
T COG3071 156 ELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGL 235 (400)
T ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHH
Confidence 455555555568899999999999999999999999999999999999999988887766433221 1111 2445555
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCC
Q psy17788 158 LNLEHLYGTKESLQECLHEAVRCN-DETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQ 236 (365)
Q Consensus 158 ~~l~~~~g~~~~a~~v~~ral~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~ 236 (365)
++=...-+..+.....+++.-+.- .++.+-..++.-+.+.|..++|.++.+.++++. -++.+...+. ..+-++
T Consensus 236 L~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~----~D~~L~~~~~--~l~~~d 309 (400)
T COG3071 236 LQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQ----WDPRLCRLIP--RLRPGD 309 (400)
T ss_pred HHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhc----cChhHHHHHh--hcCCCC
Confidence 554433344455555555432211 135566788888999999999999999999984 3444221111 234578
Q ss_pred hHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q psy17788 237 KDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQR 316 (365)
Q Consensus 237 ~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~er 316 (365)
+..-.+..++.+..+|.++ .+++.+|.++++++.+.+|...|+.+++.-|. ..-|..+++.+.+.|+...|..+++.
T Consensus 310 ~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 310 PEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred chHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHH
Confidence 8888899999999999976 57788899999999999999999999987776 57789999999999999999999999
Q ss_pred HHhCC
Q psy17788 317 AVTQK 321 (365)
Q Consensus 317 al~~~ 321 (365)
++...
T Consensus 387 ~L~~~ 391 (400)
T COG3071 387 ALLLT 391 (400)
T ss_pred HHHHh
Confidence 99743
No 117
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.01 E-value=3e-07 Score=90.38 Aligned_cols=262 Identities=15% Similarity=0.151 Sum_probs=167.0
Q ss_pred HHhc-CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHH-----cccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHH
Q psy17788 88 ELLQ-NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHL-----QATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLE 161 (365)
Q Consensus 88 ~l~~-~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~-----~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~ 161 (365)
-++. ++..+|...|..+|..||++...+..|..+.. ...+.+....+|+..-..+|.. .+...+-+.
T Consensus 47 ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s-------~~~~rl~L~ 119 (517)
T PF12569_consen 47 LLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRS-------DAPRRLPLD 119 (517)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccc-------cchhHhhcc
Confidence 3555 77889999999999999999999999988872 2235778888999887777743 222222222
Q ss_pred HHhCC-H-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc------------CCCCcHHHHHH-
Q psy17788 162 HLYGT-K-ESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAG------------QTHSSVNIYLQ- 226 (365)
Q Consensus 162 ~~~g~-~-~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~------------~~~~~~~~~~~- 226 (365)
...|+ + ..+...+...+.. .-+.++..+-.+|....+..-..+++...+.... ..++...+|..
T Consensus 120 ~~~g~~F~~~~~~yl~~~l~K-gvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~ 198 (517)
T PF12569_consen 120 FLEGDEFKERLDEYLRPQLRK-GVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLY 198 (517)
T ss_pred cCCHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHH
Confidence 22221 1 1223333333332 1234555555566555444444445444443310 01233345644
Q ss_pred -HHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC
Q psy17788 227 -CATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSD 305 (365)
Q Consensus 227 -~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g 305 (365)
+++.|...|++++|+.++++||...|.. +.+++.-|.++.+.|++..|...++.+-..++.+-.+-+..+..+.+.|
T Consensus 199 ~lAqhyd~~g~~~~Al~~Id~aI~htPt~--~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~ 276 (517)
T PF12569_consen 199 FLAQHYDYLGDYEKALEYIDKAIEHTPTL--VELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAG 276 (517)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCC
Confidence 4777778888888888888888888884 5666666888888888888888888888888887777777778888888
Q ss_pred ChHHHHHHHHHHHhCCCCCC----CcHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q psy17788 306 RVDLGRQVIQRAVTQKLPPK----KLKPLY--MKWLKLEEQYGDAEAVENVKKEIEQYVR 359 (365)
Q Consensus 306 ~~~~Ar~~~eral~~~l~~~----~~~~~~--~~~l~~e~~~G~~~~a~~v~~kA~~~v~ 359 (365)
+++.|..++..-+.....+. .|..+| ...+..+...|++..|..-+....+.+.
T Consensus 277 ~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~ 336 (517)
T PF12569_consen 277 RIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFD 336 (517)
T ss_pred CHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 88888887776665321111 233344 3344445566777777777766666554
No 118
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.99 E-value=1.2e-07 Score=89.46 Aligned_cols=163 Identities=11% Similarity=0.006 Sum_probs=130.3
Q ss_pred CCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HHHH
Q psy17788 109 PNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-TKVY 187 (365)
Q Consensus 109 p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~ 187 (365)
|....+|+..+..+...++++.|+..+...+...| ++.-+|.....+....++...|.+.+++++...|+ ..++
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P-----~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~ 377 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQP-----DNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQ 377 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHH
Confidence 77888888888888888889999988888888888 66777777888888888888888888888888886 4566
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Q psy17788 188 MNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAE 267 (365)
Q Consensus 188 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~ 267 (365)
+.+++.|.+.|++++|+.++++.+... |.++..|..+++.|...|+..++... .+..+
T Consensus 378 ~~~a~all~~g~~~eai~~L~~~~~~~---p~dp~~w~~LAqay~~~g~~~~a~~A-------------------~AE~~ 435 (484)
T COG4783 378 LNLAQALLKGGKPQEAIRILNRYLFND---PEDPNGWDLLAQAYAELGNRAEALLA-------------------RAEGY 435 (484)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcC---CCCchHHHHHHHHHHHhCchHHHHHH-------------------HHHHH
Confidence 888888888888888888888888887 88888888888888888887665443 25555
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCChhHHHHHH
Q psy17788 268 NKFGDASRAQALLEHTLTSYPARVDVWGVYV 298 (365)
Q Consensus 268 ~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~ 298 (365)
+-.|+++.|+..+.++.+.....+..|..+=
T Consensus 436 ~~~G~~~~A~~~l~~A~~~~~~~~~~~aR~d 466 (484)
T COG4783 436 ALAGRLEQAIIFLMRASQQVKLGFPDWARAD 466 (484)
T ss_pred HhCCCHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 6677788888888777777765566665553
No 119
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.97 E-value=1.7e-08 Score=95.54 Aligned_cols=110 Identities=14% Similarity=0.053 Sum_probs=90.8
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Q psy17788 189 NMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAEN 268 (365)
Q Consensus 189 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~ 268 (365)
.-+..+...|++++|+.+|++++... |.++.+|..+|.++...|++++|+..+++++...|.. ...+..+|.+++
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~---P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~--~~a~~~lg~~~~ 81 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLD---PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL--AKAYLRKGTACM 81 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC--HHHHHHHHHHHH
Confidence 34566677888999999999998888 8888899999999999999999999999998888875 556777788888
Q ss_pred HcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHh
Q psy17788 269 KFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVK 303 (365)
Q Consensus 269 ~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~ 303 (365)
..|+++.|+..|++++..+|++..+...+..+..+
T Consensus 82 ~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 82 KLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 89999999999999999999888776666665443
No 120
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.95 E-value=5.9e-08 Score=79.85 Aligned_cols=122 Identities=20% Similarity=0.157 Sum_probs=97.1
Q ss_pred HhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc-hHHHHHHHHHHHHHcCCHH
Q psy17788 196 ASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV-HVTLITRFALAENKFGDAS 274 (365)
Q Consensus 196 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~-~~~~~~~~a~~~~~~g~~e 274 (365)
..++...+...++.+++.++.++....+.+.+|..++..|++++|...|+.++...|... ...+...++.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 478888888899999998832222367788889999999999999999999998775532 1235567789999999999
Q ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy17788 275 RAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAV 318 (365)
Q Consensus 275 ~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral 318 (365)
.|...++.+ ...+..+.++...|+++...|+.++|+..|++|+
T Consensus 103 ~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 999999763 4455567788889999999999999999999875
No 121
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.95 E-value=3.3e-08 Score=77.77 Aligned_cols=108 Identities=15% Similarity=0.243 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcch-HHHHHHH
Q psy17788 185 KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVH-VTLITRF 263 (365)
Q Consensus 185 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~-~~~~~~~ 263 (365)
.+++..+..+...|++++|.+.|.+++..++.++..+.+++.+|.++...|+++.|..+|++++...|.... ..++...
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 345556666666666666666666666665211112456666666666666666666666666666655321 3445556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChh
Q psy17788 264 ALAENKFGDASRAQALLEHTLTSYPARVD 292 (365)
Q Consensus 264 a~~~~~~g~~e~A~~~fe~~l~~~P~~~~ 292 (365)
|.++.+.|+++.|...|++++..+|++..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 66666666666666666666666666543
No 122
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.93 E-value=2e-07 Score=81.23 Aligned_cols=158 Identities=11% Similarity=0.056 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHH-HHHHHHH
Q psy17788 187 YMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVT-LITRFAL 265 (365)
Q Consensus 187 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~-~~~~~a~ 265 (365)
+...+..+...|++.+|+..|++++..++.++..+.+.+.+|..++..|+++.|...+++.+...|+++.+. ++...|.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence 334444455555555555555555555543344455555555555555555555555555555555544321 2333333
Q ss_pred HHHHc-----------CCHHHHHHHHHHHHHhCCCChhH-----------------HHHHHHHHHhcCChHHHHHHHHHH
Q psy17788 266 AENKF-----------GDASRAQALLEHTLTSYPARVDV-----------------WGVYVDMLVKSDRVDLGRQVIQRA 317 (365)
Q Consensus 266 ~~~~~-----------g~~e~A~~~fe~~l~~~P~~~~~-----------------w~~~~~~~~~~g~~~~Ar~~~era 317 (365)
+.+.. +....|...|+..+..+|++..+ =...+.+|.+.|.+..|..-|+.+
T Consensus 88 ~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v 167 (203)
T PF13525_consen 88 SYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYV 167 (203)
T ss_dssp HHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHH
T ss_pred HHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 32221 12235555566666666654322 011234455556666666666666
Q ss_pred HhCCCCC-CCcHHHHHHHHHHHHhcCCHH
Q psy17788 318 VTQKLPP-KKLKPLYMKWLKLEEQYGDAE 345 (365)
Q Consensus 318 l~~~l~~-~~~~~~~~~~l~~e~~~G~~~ 345 (365)
+. +.|. +.....+...+......|..+
T Consensus 168 ~~-~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 168 IE-NYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HH-HSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HH-HCCCCchHHHHHHHHHHHHHHhCChH
Confidence 65 2221 122233444444445555554
No 123
>KOG0553|consensus
Probab=98.92 E-value=2e-08 Score=89.27 Aligned_cols=124 Identities=13% Similarity=0.030 Sum_probs=82.0
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHc
Q psy17788 191 MEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKF 270 (365)
Q Consensus 191 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~ 270 (365)
++=+.+.++|++|+..|.+++... |.++..|.+.+.+|.+.|.++.|.+-.+.||..+|. +.+.|.++|..+.-+
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~---P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~--yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD---PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH--YSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC---CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH--HHHHHHHHHHHHHcc
Confidence 334456667777777777777766 777777777777777777777777777777777776 356667777777777
Q ss_pred CCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChH---HHHHHHHHHHh
Q psy17788 271 GDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVD---LGRQVIQRAVT 319 (365)
Q Consensus 271 g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~---~Ar~~~eral~ 319 (365)
|+++.|...|.++|..+|++...|..+--...+.+... .+...++-+..
T Consensus 163 gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ 214 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGL 214 (304)
T ss_pred CcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhh
Confidence 77777777777777777777766666665555555444 44444444443
No 124
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.91 E-value=2.7e-08 Score=73.53 Aligned_cols=96 Identities=19% Similarity=0.227 Sum_probs=43.0
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Q psy17788 188 MNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAE 267 (365)
Q Consensus 188 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~ 267 (365)
..++.++...|++++|..+|+++++.. |.+..+|..++.++...|+++.|..+|++++...|... .++..++.++
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~ 78 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD---PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA--KAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch--hHHHHHHHHH
Confidence 334444444444444444444444443 44444444444444444444444444444444444421 2333334444
Q ss_pred HHcCCHHHHHHHHHHHHHhCC
Q psy17788 268 NKFGDASRAQALLEHTLTSYP 288 (365)
Q Consensus 268 ~~~g~~e~A~~~fe~~l~~~P 288 (365)
...|+++.|...|.+++..+|
T Consensus 79 ~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 79 YKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHhHHHHHHHHHHHHccCC
Confidence 444444444444444444333
No 125
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.91 E-value=2.7e-07 Score=80.39 Aligned_cols=176 Identities=14% Similarity=0.029 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCH----HHH
Q psy17788 112 SELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDET----KVY 187 (365)
Q Consensus 112 ~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~----~~~ 187 (365)
...++..+..++..|++.+|+..|++.+...|.++... .+++.++..+...|+++.|+..|++.+..+|.. .++
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~--~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAP--QAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHH--HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 44555666666666666666666666666666544332 333444444455566666666666666665532 133
Q ss_pred HHHHHHHHHhCCH-----------HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcch
Q psy17788 188 MNMMEIYAASAQI-----------RDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVH 256 (365)
Q Consensus 188 ~~l~~~~~~~g~~-----------~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~ 256 (365)
..++..+.....- .+|...|+..+.++ |+++.+ .+|...+..+-..+
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y---P~S~y~--------------~~A~~~l~~l~~~l----- 140 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY---PNSEYA--------------EEAKKRLAELRNRL----- 140 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH----TTSTTH--------------HHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC---cCchHH--------------HHHHHHHHHHHHHH-----
Confidence 3334433333211 24444555555554 433221 11211111111110
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hhHHHHHHHHHHhcCChHHHH
Q psy17788 257 VTLITRFALAENKFGDASRAQALLEHTLTSYPAR---VDVWGVYVDMLVKSDRVDLGR 311 (365)
Q Consensus 257 ~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~---~~~w~~~~~~~~~~g~~~~Ar 311 (365)
..--...|.++.+.|.+..|...|+.+++.+|+. .+++..++..+.+.|..+.+.
T Consensus 141 a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 141 AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 1111344889999999999999999999999987 456888889999999887554
No 126
>KOG0128|consensus
Probab=98.89 E-value=8.3e-07 Score=88.35 Aligned_cols=109 Identities=18% Similarity=0.110 Sum_probs=71.2
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHH-HhcCChHHHHHHHHHHHhCC
Q psy17788 243 ILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDML-VKSDRVDLGRQVIQRAVTQK 321 (365)
Q Consensus 243 ~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~-~~~g~~~~Ar~~~eral~~~ 321 (365)
.+.+.++..|.. ..-|..|..++.+.|++-+-..++++++..++.+.++|+.|+... ..++-...+..++-|++.
T Consensus 300 ~~e~~~q~~~~~--~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R-- 375 (881)
T KOG0128|consen 300 KFERLVQKEPIK--DQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVR-- 375 (881)
T ss_pred HHHHHhhhhHHH--HHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhc--
Confidence 344444444442 446778888888999999999999999998888889998887654 234445566777777776
Q ss_pred CCCCCcHHHHHHHHHHHHhcCC-HHHHHHHHHHHHH
Q psy17788 322 LPPKKLKPLYMKWLKLEEQYGD-AEAVENVKKEIEQ 356 (365)
Q Consensus 322 l~~~~~~~~~~~~l~~e~~~G~-~~~a~~v~~kA~~ 356 (365)
.++..-.+|.+++-....++. .......+.+++.
T Consensus 376 -~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls 410 (881)
T KOG0128|consen 376 -SCPWTGDLWKRALLALERNREEITVIVQNLEKDLS 410 (881)
T ss_pred -CCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHH
Confidence 355677788888743333332 2233334444443
No 127
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.89 E-value=6.9e-07 Score=79.93 Aligned_cols=165 Identities=10% Similarity=0.026 Sum_probs=97.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHH----HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q psy17788 154 WTSLLNLEHLYGTKESLQECLHEAVRCNDETK----VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCAT 229 (365)
Q Consensus 154 w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~ 229 (365)
++..+......|+++.|+..|+.++...|... +.+.++.+|.+.++++.|+..|++.++.++.+|..+.+++..|.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence 33333333444555555555555555555322 22344555555555555555555555555444444444555544
Q ss_pred HHHHcC---------------C---hHHHHHHHHHHHhcCCCcch---------------HHHHHHHHHHHHHcCCHHHH
Q psy17788 230 LLLRLG---------------Q---KDTARHILQRGLNNLPPAVH---------------VTLITRFALAENKFGDASRA 276 (365)
Q Consensus 230 ~~~~~g---------------~---~~~A~~~l~ral~~~p~~~~---------------~~~~~~~a~~~~~~g~~e~A 276 (365)
.+...+ + ...|...|++.+...|+... ..--...|.++.+.|.+..|
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA 194 (243)
T PRK10866 115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAV 194 (243)
T ss_pred hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence 332221 1 12344555555555555432 11112447888899999999
Q ss_pred HHHHHHHHHhCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy17788 277 QALLEHTLTSYPAR---VDVWGVYVDMLVKSDRVDLGRQVIQRAV 318 (365)
Q Consensus 277 ~~~fe~~l~~~P~~---~~~w~~~~~~~~~~g~~~~Ar~~~eral 318 (365)
..-|+.++..+|+. .++...++..+...|..++|..+.....
T Consensus 195 ~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 195 VNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 99999999999976 5677888899999999999988776553
No 128
>KOG0128|consensus
Probab=98.88 E-value=1.5e-07 Score=93.59 Aligned_cols=249 Identities=14% Similarity=0.206 Sum_probs=180.8
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHH-HHhCCHHHHHHHHHHH
Q psy17788 99 DGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLE-HLYGTKESLQECLHEA 177 (365)
Q Consensus 99 ~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~-~~~g~~~~a~~v~~ra 177 (365)
..|++.+...|.-...|..|+.+....|+.-.-..+++|++.-.+ ....+|++|.... ..++-.+.+..++-|+
T Consensus 299 ~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~-----~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra 373 (881)
T KOG0128|consen 299 FKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMV-----LDRALWIGYGVYLDTELKVPQRGVSVHPRA 373 (881)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhcc-----ccHHHHhhhhhhcccccccccccccccchh
Confidence 458888888888889999999999999999988899999998676 5578999888644 2334456678899999
Q ss_pred HHcCCCH-HHHHHHHHHHHHhCC-HHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcC------ChHHHHHHHHHHHh
Q psy17788 178 VRCNDET-KVYMNMMEIYAASAQ-IRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLG------QKDTARHILQRGLN 249 (365)
Q Consensus 178 l~~~~~~-~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g------~~~~A~~~l~ral~ 249 (365)
++.||-. .+|.+....+.+.+. .......+.+.+.. -...+..+..+..+++ +++.-++.|++|..
T Consensus 374 ~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~------~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~ 447 (881)
T KOG0128|consen 374 VRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSM------TVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWE 447 (881)
T ss_pred hcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHH------HHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHH
Confidence 9999854 566555444444443 33344445555433 2334555555555544 34445556666654
Q ss_pred cCC------CcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCChh-HHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q psy17788 250 NLP------PAVHVTLITRFALAENK-FGDASRAQALLEHTLTSYPARVD-VWGVYVDMLVKSDRVDLGRQVIQRAVTQK 321 (365)
Q Consensus 250 ~~p------~~~~~~~~~~~a~~~~~-~g~~e~A~~~fe~~l~~~P~~~~-~w~~~~~~~~~~g~~~~Ar~~~eral~~~ 321 (365)
.+. .+....++..+|.++.. +++.+.|+.++..++..-..+.. .|+.|++++...|+...+|.++.+|....
T Consensus 448 eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~ 527 (881)
T KOG0128|consen 448 ELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQV 527 (881)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcC
Confidence 321 22235566777888876 57899999999999876666666 89999999999999999999999999854
Q ss_pred CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy17788 322 LPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYV 358 (365)
Q Consensus 322 l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v 358 (365)
..+.....+...|..||+.+|+++....+-++.+.-|
T Consensus 528 ~~~~~~~ev~~~~~r~Ere~gtl~~~~~~~~~~~pr~ 564 (881)
T KOG0128|consen 528 VDPEDALEVLEFFRRFEREYGTLESFDLCPEKVLPRV 564 (881)
T ss_pred cCchhHHHHHHHHHHHHhccccHHHHhhhHHhhcchh
Confidence 4444477899999999999999998877666554433
No 129
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.88 E-value=9.5e-08 Score=78.11 Aligned_cols=98 Identities=9% Similarity=-0.086 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHH
Q psy17788 185 KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFA 264 (365)
Q Consensus 185 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a 264 (365)
.....++..+...|++++|..+|+.++... |.+...|+++|.++-..|++.+|+..|.+|+...|+++. .+...|
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D---p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~--~~~~ag 110 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYD---AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQ--APWAAA 110 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch--HHHHHH
Confidence 345666777778888888888888888877 888888888888888888888888888888888887544 556668
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Q psy17788 265 LAENKFGDASRAQALLEHTLTSY 287 (365)
Q Consensus 265 ~~~~~~g~~e~A~~~fe~~l~~~ 287 (365)
.++...|+.+.|+..|+.++...
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHh
Confidence 88888888888888888887765
No 130
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.87 E-value=2.2e-06 Score=91.33 Aligned_cols=243 Identities=14% Similarity=0.100 Sum_probs=153.3
Q ss_pred HHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-----CH--HHHHHH
Q psy17788 118 YMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND-----ET--KVYMNM 190 (365)
Q Consensus 118 ~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~-----~~--~~~~~l 190 (365)
.+..+...|+++.|...+++++...+..........+..++......|+++.|...+++++.... .. .++..+
T Consensus 458 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~l 537 (903)
T PRK04841 458 RAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQ 537 (903)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Confidence 34455678888888888888887544321111122334455556677888888888888876532 11 234556
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHhcCC-----CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---cchHHHHHH
Q psy17788 191 MEIYAASAQIRDLESTVKLLLKKAGQT-----HSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPP---AVHVTLITR 262 (365)
Q Consensus 191 ~~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~---~~~~~~~~~ 262 (365)
+.++...|+++.|...+++++...... +....++..++.++...|++++|...+.+++..... ...+..+..
T Consensus 538 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 617 (903)
T PRK04841 538 SEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAM 617 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHH
Confidence 777888888888888888887754110 111234556677788888888888888888765321 112344455
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCh---------------------------------------------hHHHHH
Q psy17788 263 FALAENKFGDASRAQALLEHTLTSYPARV---------------------------------------------DVWGVY 297 (365)
Q Consensus 263 ~a~~~~~~g~~e~A~~~fe~~l~~~P~~~---------------------------------------------~~w~~~ 297 (365)
.+.+....|+++.|...++.++...+... ..+..+
T Consensus 618 la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~ 697 (903)
T PRK04841 618 LAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNI 697 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHH
Confidence 67777788888888888877755322110 012345
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCC--CC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q psy17788 298 VDMLVKSDRVDLGRQVIQRAVTQK--LP-PKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRN 360 (365)
Q Consensus 298 ~~~~~~~g~~~~Ar~~~eral~~~--l~-~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~ 360 (365)
+.++...|+.++|...|++++... .. +.........+.......|+.+.|...+.+|++..+.
T Consensus 698 a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 698 ARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 556677788888888888887621 00 0112234445566667788888888888888876654
No 131
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.86 E-value=5.1e-08 Score=79.70 Aligned_cols=100 Identities=10% Similarity=-0.044 Sum_probs=94.0
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHH
Q psy17788 218 HSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVY 297 (365)
Q Consensus 218 ~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~ 297 (365)
+......+.+|-.++..|++++|..+|+-+...+|.+ ...|+.+|.++...|+++.|+..|.+++...|+++......
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~--~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~a 109 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS--FDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAA 109 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 4456778999999999999999999999999999995 67889999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q psy17788 298 VDMLVKSDRVDLGRQVIQRAVT 319 (365)
Q Consensus 298 ~~~~~~~g~~~~Ar~~~eral~ 319 (365)
+.++...|+.+.|+..|+.|+.
T Consensus 110 g~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 110 AECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999997
No 132
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.83 E-value=1.3e-07 Score=74.27 Aligned_cols=100 Identities=17% Similarity=0.161 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hhHHHH
Q psy17788 221 VNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVH-VTLITRFALAENKFGDASRAQALLEHTLTSYPAR---VDVWGV 296 (365)
Q Consensus 221 ~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~-~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~---~~~w~~ 296 (365)
+++++..|..+...|++++|...|.+++...|.++. ..+...+|.++...|+++.|..+|+.++..+|+. ..+|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 467899999999999999999999999998887533 3466778999999999999999999999999885 568999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC
Q psy17788 297 YVDMLVKSDRVDLGRQVIQRAVTQ 320 (365)
Q Consensus 297 ~~~~~~~~g~~~~Ar~~~eral~~ 320 (365)
++.++.+.|+++.|..+|++++..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHH
Confidence 999999999999999999999984
No 133
>KOG0550|consensus
Probab=98.82 E-value=4.8e-07 Score=83.60 Aligned_cols=159 Identities=18% Similarity=0.097 Sum_probs=129.5
Q ss_pred CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccc-------cchHHHHHHHHHHHHHh
Q psy17788 92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNE-------EDRLNVWTSLLNLEHLY 164 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~-------~~~~~~w~~~~~l~~~~ 164 (365)
++-++++..--+.++.++.+.+..+-.+.++...++.++|...|+++|.+.|.... .....+|..-++...+.
T Consensus 183 ~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~ 262 (486)
T KOG0550|consen 183 GDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKN 262 (486)
T ss_pred ccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhc
Confidence 45556777777788889999988888888888889999999999999998885422 12356677777777788
Q ss_pred CCHHHHHHHHHHHHHcCCC-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHH
Q psy17788 165 GTKESLQECLHEAVRCNDE-----TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDT 239 (365)
Q Consensus 165 g~~~~a~~v~~ral~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~ 239 (365)
|.+..|.++|..||.+.|+ ...|...+.+..+.|+..+|+.-.+++++.. +...+.+...|.+++..+++++
T Consensus 263 G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD---~syikall~ra~c~l~le~~e~ 339 (486)
T KOG0550|consen 263 GNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID---SSYIKALLRRANCHLALEKWEE 339 (486)
T ss_pred cchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC---HHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999988874 3467777888888899999999999999887 7888888888999999999999
Q ss_pred HHHHHHHHHhcCCC
Q psy17788 240 ARHILQRGLNNLPP 253 (365)
Q Consensus 240 A~~~l~ral~~~p~ 253 (365)
|.+-|++|++....
T Consensus 340 AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 340 AVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHhhccc
Confidence 99999999887655
No 134
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=2.2e-07 Score=83.14 Aligned_cols=119 Identities=23% Similarity=0.215 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcC---ChHHHHH
Q psy17788 167 KESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLG---QKDTARH 242 (365)
Q Consensus 167 ~~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g---~~~~A~~ 242 (365)
.+....-++.-++.+|+ ..-|..|+.+|...|++..|...|.++++.. |+++.++..|+..++... ...++..
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~---g~n~~~~~g~aeaL~~~a~~~~ta~a~~ 214 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA---GDNPEILLGLAEALYYQAGQQMTAKARA 214 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 55666777777777774 4688888888888888888888888888887 888888888888877653 3467788
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy17788 243 ILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPAR 290 (365)
Q Consensus 243 ~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~ 290 (365)
+|++++..+|.+ +...+-+|.-++..|++.+|...++.++...|.+
T Consensus 215 ll~~al~~D~~~--iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 215 LLRQALALDPAN--IRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHhcCCcc--HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 888888888884 5566666777888888888888888888887765
No 135
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.79 E-value=1.3e-07 Score=69.66 Aligned_cols=97 Identities=16% Similarity=0.222 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q psy17788 153 VWTSLLNLEHLYGTKESLQECLHEAVRCNDET-KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLL 231 (365)
Q Consensus 153 ~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~ 231 (365)
+|..++..+...|+++.|..+|++++...|.. .++..++.++...|++++|.++|++++... +.+..+|..++.++
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~ 78 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD---PDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CcchhHHHHHHHHH
Confidence 45666666667777788888888877776654 566777888888888888888888888776 77777888888888
Q ss_pred HHcCChHHHHHHHHHHHhcCC
Q psy17788 232 LRLGQKDTARHILQRGLNNLP 252 (365)
Q Consensus 232 ~~~g~~~~A~~~l~ral~~~p 252 (365)
...|+++.|..++.+++...|
T Consensus 79 ~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 79 YKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHhHHHHHHHHHHHHccCC
Confidence 888888888888888877665
No 136
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.78 E-value=1.9e-07 Score=88.38 Aligned_cols=107 Identities=7% Similarity=0.011 Sum_probs=58.2
Q ss_pred HHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHH
Q psy17788 116 VKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-TKVYMNMMEIY 194 (365)
Q Consensus 116 ~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~~~l~~~~ 194 (365)
..-+......|+++.|+..|++||...| .+..+|..++.++...|+++.|+..+++++..+|. ..+|+.++.+|
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P-----~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~ 80 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDP-----NNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTAC 80 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 3344445555556666666666655555 44555555555555555555555555555555553 34555555555
Q ss_pred HHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q psy17788 195 AASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATL 230 (365)
Q Consensus 195 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~ 230 (365)
...|++++|+..|+++++.. |.++.+...++.+
T Consensus 81 ~~lg~~~eA~~~~~~al~l~---P~~~~~~~~l~~~ 113 (356)
T PLN03088 81 MKLEEYQTAKAALEKGASLA---PGDSRFTKLIKEC 113 (356)
T ss_pred HHhCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHH
Confidence 55555555555555555555 5555544444333
No 137
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.77 E-value=3.8e-06 Score=75.16 Aligned_cols=166 Identities=10% Similarity=0.033 Sum_probs=126.6
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcH---HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHH-
Q psy17788 183 ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSV---NIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVT- 258 (365)
Q Consensus 183 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~- 258 (365)
+...+...+.-+...|++++|+..|+.++..+ |.++ .+.+.+|..+++.++++.|...+++.++..|+++.+.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y---P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~ 107 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY---PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY 107 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHH
Confidence 44556667777888999999999999999999 6554 4458899999999999999999999999999987754
Q ss_pred HHHHHHHHHHHcC---------------C---HHHHHHHHHHHHHhCCCChhH---H--------------HHHHHHHHh
Q psy17788 259 LITRFALAENKFG---------------D---ASRAQALLEHTLTSYPARVDV---W--------------GVYVDMLVK 303 (365)
Q Consensus 259 ~~~~~a~~~~~~g---------------~---~e~A~~~fe~~l~~~P~~~~~---w--------------~~~~~~~~~ 303 (365)
++...|.+....+ + ...|...|+..+..+|++..+ . ...+.+|.+
T Consensus 108 a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~ 187 (243)
T PRK10866 108 VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTK 187 (243)
T ss_pred HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666543332 2 236779999999999987332 1 123467788
Q ss_pred cCChHHHHHHHHHHHhCCCC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy17788 304 SDRVDLGRQVIQRAVTQKLP-PKKLKPLYMKWLKLEEQYGDAEAVENVKK 352 (365)
Q Consensus 304 ~g~~~~Ar~~~eral~~~l~-~~~~~~~~~~~l~~e~~~G~~~~a~~v~~ 352 (365)
.|.+..|..-|+.++. +.| .+.........+..+...|..+.+..+..
T Consensus 188 ~~~y~AA~~r~~~v~~-~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 188 RGAYVAVVNRVEQMLR-DYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred cCchHHHHHHHHHHHH-HCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 9999999999999998 443 23344455566677778899998877654
No 138
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.77 E-value=2.2e-08 Score=74.16 Aligned_cols=81 Identities=17% Similarity=0.216 Sum_probs=40.2
Q ss_pred CChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHH
Q psy17788 235 GQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVI 314 (365)
Q Consensus 235 g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~ 314 (365)
|+++.|+.++++++...|.+....++..+|.++++.|++++|..++++ +...|.+...+..+|.++.+.|++++|+.+|
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 445555555555555555321223334445555555555555555555 4444544455555555555555555555555
Q ss_pred HH
Q psy17788 315 QR 316 (365)
Q Consensus 315 er 316 (365)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 139
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.75 E-value=6.1e-08 Score=68.80 Aligned_cols=67 Identities=18% Similarity=0.272 Sum_probs=35.4
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q psy17788 220 SVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFG-DASRAQALLEHTLTSYP 288 (365)
Q Consensus 220 ~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g-~~e~A~~~fe~~l~~~P 288 (365)
++.+|..+|..+...|++++|+..|.++++.+|+ +..++..+|.++...| ++++|+..|+++++.+|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~--~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN--NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3445555555555555555555555555555555 2444455555555555 45555555555555554
No 140
>KOG3785|consensus
Probab=98.75 E-value=4.4e-06 Score=76.02 Aligned_cols=160 Identities=14% Similarity=0.156 Sum_probs=97.1
Q ss_pred HHHHHhcCCCCCChHHHHHHhhcC---CCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHH
Q psy17788 85 AEDELLQNGEPVSPDGFDRMLLGQ---PNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLE 161 (365)
Q Consensus 85 ~e~~l~~~~~p~a~~~fe~~l~~~---p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~ 161 (365)
+|.-+...+...|+..++-.+..+ .++..+|+.++.|+ .|++++|..+|.-+..... -...+|..++-+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fh--LgdY~~Al~~Y~~~~~~~~-----~~~el~vnLAcc~ 101 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFH--LGDYEEALNVYTFLMNKDD-----APAELGVNLACCK 101 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHh--hccHHHHHHHHHHHhccCC-----CCcccchhHHHHH
Confidence 444444455668888888777554 34778999887765 6899999999997776333 3357888888777
Q ss_pred HHhCCHHHHHHHHHHHH--------------HcCCCH-------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q psy17788 162 HLYGTKESLQECLHEAV--------------RCNDET-------------KVYMNMMEIYAASAQIRDLESTVKLLLKKA 214 (365)
Q Consensus 162 ~~~g~~~~a~~v~~ral--------------~~~~~~-------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 214 (365)
.-.|.+.+|..+-.+|- +.++.. .--+.++.+....-.+++|+++|++.+...
T Consensus 102 FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn 181 (557)
T KOG3785|consen 102 FYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN 181 (557)
T ss_pred HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 77788888877766542 122111 111222333333334566666666666543
Q ss_pred cCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc
Q psy17788 215 GQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPA 254 (365)
Q Consensus 215 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~ 254 (365)
|...-+-..+|.+|++..-++.+..++.--|+..|++
T Consensus 182 ---~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdS 218 (557)
T KOG3785|consen 182 ---PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDS 218 (557)
T ss_pred ---hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCc
Confidence 4444444445555555555566655555555556654
No 141
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.75 E-value=8.8e-07 Score=82.67 Aligned_cols=147 Identities=16% Similarity=0.232 Sum_probs=101.9
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHcccC------------HHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCC
Q psy17788 99 DGFDRMLLGQPNNSELWVKYMAYHLQATE------------IEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGT 166 (365)
Q Consensus 99 ~~fe~~l~~~p~~~~~w~~~~~~~~~~~~------------~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~ 166 (365)
..|++.+..+|.+..+|+.|+.+.-..-. .+....++++||+..| ++..+|..|+.+.....+
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-----~~~~L~l~~l~~~~~~~~ 80 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-----DSERLLLGYLEEGEKVWD 80 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHhCC
Confidence 45889999999999999999998844322 4566778888888877 667888888888877778
Q ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHhcCCC---------------CcHHHHHHH
Q psy17788 167 KESLQECLHEAVRCND-ETKVYMNMMEIYAAS---AQIRDLESTVKLLLKKAGQTH---------------SSVNIYLQC 227 (365)
Q Consensus 167 ~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~~~~~---------------~~~~~~~~~ 227 (365)
.+.+.+.|++++..+| +..+|..++++.... -.+...+.+|.+++....... .-..+...+
T Consensus 81 ~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~ 160 (321)
T PF08424_consen 81 SEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRL 160 (321)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHH
Confidence 8888888888888877 457887777765542 356777888877776542110 112345555
Q ss_pred HHHHHHcCChHHHHHHHHHHHhc
Q psy17788 228 ATLLLRLGQKDTARHILQRGLNN 250 (365)
Q Consensus 228 a~~~~~~g~~~~A~~~l~ral~~ 250 (365)
..++...|-.+.|..+++-.++.
T Consensus 161 ~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 161 CRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred HHHHHHCCchHHHHHHHHHHHHH
Confidence 55555556666666655555554
No 142
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.75 E-value=1.1e-06 Score=74.48 Aligned_cols=82 Identities=16% Similarity=0.121 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q psy17788 154 WTSLLNLEHLYGTKESLQECLHEAVRCNDE----TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCAT 229 (365)
Q Consensus 154 w~~~~~l~~~~g~~~~a~~v~~ral~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~ 229 (365)
+..++..+...|+++.|...|++++...|+ ..+|..++.++...|++++|+..|.+++... |.+...+..++.
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~ 114 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN---PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cccHHHHHHHHH
Confidence 333334444444444444444444433221 1234444444444444444444444444444 444444444444
Q ss_pred HHHHcCChH
Q psy17788 230 LLLRLGQKD 238 (365)
Q Consensus 230 ~~~~~g~~~ 238 (365)
++...|+..
T Consensus 115 ~~~~~g~~~ 123 (172)
T PRK02603 115 IYHKRGEKA 123 (172)
T ss_pred HHHHcCChH
Confidence 444444433
No 143
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.72 E-value=4.6e-07 Score=86.02 Aligned_cols=121 Identities=17% Similarity=0.138 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q psy17788 154 WTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLR 233 (365)
Q Consensus 154 w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~ 233 (365)
-.+++.+....+.++.|+.+|++.....|. +...++.++...++..+|..++.++++.. |.+..++...+.+++.
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~---p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERDPE--VAVLLARVYLLMNEEVEAIRLLNEALKEN---PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcCCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHh
Confidence 334444444445555555555555554433 33334555555555555555555555554 5555555555555555
Q ss_pred cCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy17788 234 LGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLE 281 (365)
Q Consensus 234 ~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe 281 (365)
.++++.|..+.++|+...|.. ...|..++.+|...|+++.|...+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~--f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSE--FETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 555555555555555555553 3444555555555555555554444
No 144
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.72 E-value=9.2e-07 Score=81.15 Aligned_cols=206 Identities=16% Similarity=0.147 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHhhcc-CccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC---CC----H
Q psy17788 113 ELWVKYMAYHLQATEIEKARSIARRALTVIN-IRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCN---DE----T 184 (365)
Q Consensus 113 ~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p-~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~---~~----~ 184 (365)
.++..-+..+...+++++|...|.+|....- ......-...+...+.++... +++.|+..|++|+.+. .. .
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA 114 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAA 114 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 5666778888889999999999999987432 122223344555555565444 8999999999998763 11 3
Q ss_pred HHHHHHHHHHHHh-CCHHHHHHHHHHHHHHhcCCC---CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc----h
Q psy17788 185 KVYMNMMEIYAAS-AQIRDLESTVKLLLKKAGQTH---SSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV----H 256 (365)
Q Consensus 185 ~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~----~ 256 (365)
.++..++.+|... |++++|++.|++++..+.... ....++..++.++.+.|++++|..+|++.....-... .
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~ 194 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS 194 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence 4678889999988 999999999999998873221 2246788999999999999999999999887532211 2
Q ss_pred H-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----hhHHHHHHHHHHhc--CChHHHHHHHHHHHh
Q psy17788 257 V-TLITRFALAENKFGDASRAQALLEHTLTSYPAR-----VDVWGVYVDMLVKS--DRVDLGRQVIQRAVT 319 (365)
Q Consensus 257 ~-~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~-----~~~w~~~~~~~~~~--g~~~~Ar~~~eral~ 319 (365)
+ ..+...+.++...||+..|...|++....+|.. ..+...+++.+... ..+..+..-|+++..
T Consensus 195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCc
Confidence 3 245566778888999999999999999888743 33444455554432 345666666666643
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.71 E-value=6e-07 Score=73.83 Aligned_cols=118 Identities=15% Similarity=0.091 Sum_probs=56.8
Q ss_pred ccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCH----HHHHHHHHHHHHhCCH
Q psy17788 125 ATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDET----KVYMNMMEIYAASAQI 200 (365)
Q Consensus 125 ~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~----~~~~~l~~~~~~~g~~ 200 (365)
.++...+...++..+...|... -....++.++.+....|+++.|...|+.++...|+. .+.+.++.++...|++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~--ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSP--YAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCCh--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 3444444444444444444210 002333334444444455555555555555444322 1344555556666666
Q ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy17788 201 RDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGL 248 (365)
Q Consensus 201 ~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral 248 (365)
++|+..++..... +-.+.++...|+++...|++++|+..|++||
T Consensus 102 d~Al~~L~~~~~~----~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 102 DEALATLQQIPDE----AFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHhccCc----chHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 6666655442211 3345555566666666666666666665553
No 146
>KOG0553|consensus
Probab=98.70 E-value=2.3e-07 Score=82.70 Aligned_cols=107 Identities=17% Similarity=0.183 Sum_probs=89.0
Q ss_pred HHHhCCHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHH
Q psy17788 161 EHLYGTKESLQECLHEAVRCNDETKVY-MNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDT 239 (365)
Q Consensus 161 ~~~~g~~~~a~~v~~ral~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~ 239 (365)
....++|..|+..|.+||.+.|...|| ..-+..|.+.|.++.|++-++.++... |...++|..+|.+|+.+|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD---p~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID---PHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC---hHHHHHHHHHHHHHHccCcHHH
Confidence 345578999999999999999877665 666999999999999999999999998 9999999999999999999999
Q ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCC
Q psy17788 240 ARHILQRGLNNLPPAVHVTLITRFALAENKFGD 272 (365)
Q Consensus 240 A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~ 272 (365)
|...|+++|.+.|.....+ ..+...+.+.+.
T Consensus 168 A~~aykKaLeldP~Ne~~K--~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYK--SNLKIAEQKLNE 198 (304)
T ss_pred HHHHHHhhhccCCCcHHHH--HHHHHHHHHhcC
Confidence 9999999999999976544 333444444443
No 147
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.70 E-value=5.2e-07 Score=81.43 Aligned_cols=105 Identities=18% Similarity=0.233 Sum_probs=81.7
Q ss_pred HHHHHHH-HHHHHhCCHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc-hHHH
Q psy17788 185 KVYMNMM-EIYAASAQIRDLESTVKLLLKKAGQTHSS---VNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV-HVTL 259 (365)
Q Consensus 185 ~~~~~l~-~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~-~~~~ 259 (365)
..++..+ .++.+.|++++|+..|+..++.+ |.+ +.+++.+|.+|+..|+++.|+..|++++...|.++ ....
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 3343333 33456688889998899998888 655 57888888888888999999988988888877643 3457
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh
Q psy17788 260 ITRFALAENKFGDASRAQALLEHTLTSYPARVD 292 (365)
Q Consensus 260 ~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~ 292 (365)
+.++|.++...|+.+.|+.+|+++++.+|+...
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 777888888888899999999988888888653
No 148
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.69 E-value=2.3e-06 Score=71.25 Aligned_cols=142 Identities=15% Similarity=0.148 Sum_probs=119.5
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-hcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q psy17788 174 LHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKK-AGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLP 252 (365)
Q Consensus 174 ~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p 252 (365)
..+.+...|...-...++......|++.+|...|++++.- | ..++.+.+.+++..+..+++..|...++...+..|
T Consensus 79 a~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~f---A~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p 155 (251)
T COG4700 79 ATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIF---AHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP 155 (251)
T ss_pred HHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcccc---CCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC
Confidence 3334445566667788999999999999999999999863 4 78999999999999999999999999999999988
Q ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHH----HHHHHHHh
Q psy17788 253 PAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGR----QVIQRAVT 319 (365)
Q Consensus 253 ~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar----~~~eral~ 319 (365)
.........-||..+.-.|.+..|++.|+.++..+|. +..-..|+.++.++|..++++ .+++++..
T Consensus 156 a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r 225 (251)
T COG4700 156 AFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVDTAKR 225 (251)
T ss_pred ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 7544445566799999999999999999999999998 688889999999999777665 45555554
No 149
>KOG2376|consensus
Probab=98.69 E-value=3.1e-05 Score=74.88 Aligned_cols=247 Identities=13% Similarity=0.076 Sum_probs=158.4
Q ss_pred cCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCc-cc-------------------------cchHHHHHHHHHH
Q psy17788 107 GQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIR-NE-------------------------EDRLNVWTSLLNL 160 (365)
Q Consensus 107 ~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~-~~-------------------------~~~~~~w~~~~~l 160 (365)
.++.+..+..-++..+.+.|++++|..+|+..++..... ++ .+..++.+..+-.
T Consensus 105 ~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~ 184 (652)
T KOG2376|consen 105 LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACI 184 (652)
T ss_pred ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHH
Confidence 356677788899999999999999999999886632211 00 1123444555555
Q ss_pred HHHhCCHHHHHHHHHHHHHcCC--------C--------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHH
Q psy17788 161 EHLYGTKESLQECLHEAVRCND--------E--------TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIY 224 (365)
Q Consensus 161 ~~~~g~~~~a~~v~~ral~~~~--------~--------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 224 (365)
+...|++..|+++++.|++++. + ..+...++-++...|+.++|.++|...++.. +.+..+.
T Consensus 185 ~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~---~~D~~~~ 261 (652)
T KOG2376|consen 185 LIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN---PADEPSL 261 (652)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc---CCCchHH
Confidence 6677899999999999966542 1 2366788888999999999999999999876 3333221
Q ss_pred HHH-------------------------------------------------HHHHHHcCChHHHHHHHHHHHhcCCCcc
Q psy17788 225 LQC-------------------------------------------------ATLLLRLGQKDTARHILQRGLNNLPPAV 255 (365)
Q Consensus 225 ~~~-------------------------------------------------a~~~~~~g~~~~A~~~l~ral~~~p~~~ 255 (365)
.-. +.+.+-.+.-+.++++..+.-...|..
T Consensus 262 Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~- 340 (652)
T KOG2376|consen 262 AVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPES- 340 (652)
T ss_pred HHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchH-
Confidence 111 111111222222322222211111221
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHhcCChHHHHHHHH--------HHHhCCCCCCC
Q psy17788 256 HVTLITRFALAENKFGDASRAQALLEHTLTSYPAR-VDVWGVYVDMLVKSDRVDLGRQVIQ--------RAVTQKLPPKK 326 (365)
Q Consensus 256 ~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~-~~~w~~~~~~~~~~g~~~~Ar~~~e--------ral~~~l~~~~ 326 (365)
.+.++..-+...... .+..+..++......+|.. ..+....+++.+..|+++.|..++. ........
T Consensus 341 ~~~~ll~~~t~~~~~-~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~--- 416 (652)
T KOG2376|consen 341 LFPILLQEATKVREK-KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL--- 416 (652)
T ss_pred HHHHHHHHHHHHHHH-HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC---
Confidence 122222222222222 6778888888888899987 7788888999999999999999999 44432211
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhh
Q psy17788 327 LKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNSK 362 (365)
Q Consensus 327 ~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~~ 362 (365)
..+--....+..+.++...+..|+..|+.|+.++.
T Consensus 417 -P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~ 451 (652)
T KOG2376|consen 417 -PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQ 451 (652)
T ss_pred -hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhc
Confidence 22233333445566788889999999999998764
No 150
>KOG2053|consensus
Probab=98.68 E-value=2.5e-05 Score=78.76 Aligned_cols=129 Identities=14% Similarity=0.058 Sum_probs=90.3
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHH
Q psy17788 81 RIRQAEDELLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNL 160 (365)
Q Consensus 81 ~~~~~e~~l~~~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l 160 (365)
++|-+=..+-.++...|....+++++.+|+.+.+-+--+-.+.+.|..++|..+++ ++...+. +.....-.+-++
T Consensus 12 r~rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le-~~~~~~~----~D~~tLq~l~~~ 86 (932)
T KOG2053|consen 12 RLRPIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLE-ALYGLKG----TDDLTLQFLQNV 86 (932)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHh-hhccCCC----CchHHHHHHHHH
Confidence 34433333333555578888888999999999888888888899999999986665 4442332 233445556678
Q ss_pred HHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q psy17788 161 EHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKA 214 (365)
Q Consensus 161 ~~~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 214 (365)
+...|..+++..+|+++++.+|+.....++...|.+-+.+.+-.++--++-+.+
T Consensus 87 y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~ 140 (932)
T KOG2053|consen 87 YRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNF 140 (932)
T ss_pred HHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 888889999999999999999987777777777777766655444444444444
No 151
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.68 E-value=5.8e-07 Score=76.17 Aligned_cols=90 Identities=16% Similarity=0.158 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHH
Q psy17788 186 VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFAL 265 (365)
Q Consensus 186 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~ 265 (365)
.+..++..+...|++++|...|+++++.....+....+|..+|.++...|++++|..+|.+++...|.. ...+..+|.
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~ 114 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ--PSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--HHHHHHHHH
Confidence 445556566666666666666666665431101123456666666666666666666666666655553 334444555
Q ss_pred HHHHcCCHHHHH
Q psy17788 266 AENKFGDASRAQ 277 (365)
Q Consensus 266 ~~~~~g~~e~A~ 277 (365)
++...|+...+.
T Consensus 115 ~~~~~g~~~~a~ 126 (172)
T PRK02603 115 IYHKRGEKAEEA 126 (172)
T ss_pred HHHHcCChHhHh
Confidence 555555544333
No 152
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.67 E-value=5.3e-07 Score=82.70 Aligned_cols=79 Identities=15% Similarity=0.210 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCh-HHHHHHHH
Q psy17788 237 KDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRV-DLGRQVIQ 315 (365)
Q Consensus 237 ~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~-~~Ar~~~e 315 (365)
+.+|..+|+...+..|.. +.++...+.++...|++++|..+++.++..+|++++++..++.+....|+. +.+..++.
T Consensus 183 ~~~A~y~f~El~~~~~~t--~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDKFGST--PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCCS--S--HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 455555555544433332 333444455555555555555555555555555555555555554444444 33344444
Q ss_pred HH
Q psy17788 316 RA 317 (365)
Q Consensus 316 ra 317 (365)
..
T Consensus 261 qL 262 (290)
T PF04733_consen 261 QL 262 (290)
T ss_dssp HC
T ss_pred HH
Confidence 43
No 153
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.66 E-value=1.4e-06 Score=82.77 Aligned_cols=120 Identities=10% Similarity=0.135 Sum_probs=85.3
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Q psy17788 188 MNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAE 267 (365)
Q Consensus 188 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~ 267 (365)
-.+..++...++++.|+++|+++.+.. +.++..++.++...++..+|..++.++|...|.+ ..++...+.++
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~------pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d--~~LL~~Qa~fL 244 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD------PEVAVLLARVYLLMNEEVEAIRLLNEALKENPQD--SELLNLQAEFL 244 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC------CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Confidence 344555566677777777777776553 3456667777777777777777777777777764 45555567777
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q psy17788 268 NKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQ 315 (365)
Q Consensus 268 ~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~e 315 (365)
...|+++.|..+.++++...|.+...|..++.+|+..|+++.|...++
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 777777777777777777777777777777777777777777766655
No 154
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.66 E-value=5e-05 Score=64.92 Aligned_cols=216 Identities=17% Similarity=0.154 Sum_probs=170.7
Q ss_pred CChHHHHHHhhcCCC--CHHHHHHHHHHHHcccCHHHHHHHHHHHHh--hccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788 96 VSPDGFDRMLLGQPN--NSELWVKYMAYHLQATEIEKARSIARRALT--VINIRNEEDRLNVWTSLLNLEHLYGTKESLQ 171 (365)
Q Consensus 96 ~a~~~fe~~l~~~p~--~~~~w~~~~~~~~~~~~~e~A~~~~~raL~--~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~ 171 (365)
.+...+..++...+. ........+..+...+.+..+...+..++. ..+ .....+..........+.+..+.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 41 EALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLP-----NLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhcc-----chHHHHHHHHHHHHHHhhHHHHH
Confidence 445566667666666 377888888888999999999999998886 344 55677888888888888899999
Q ss_pred HHHHHHHHcCCCH-HHHHHHHH-HHHHhCCHHHHHHHHHHHHHHhcCCC---CcHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy17788 172 ECLHEAVRCNDET-KVYMNMME-IYAASAQIRDLESTVKLLLKKAGQTH---SSVNIYLQCATLLLRLGQKDTARHILQR 246 (365)
Q Consensus 172 ~v~~ral~~~~~~-~~~~~l~~-~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~a~~~~~~g~~~~A~~~l~r 246 (365)
..+..++...+.. ..+..... ++...|+++.+...|.+++... + .....+...+..+...++++.+...+.+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 192 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELD---PELNELAEALLALGALLEALGRYEEALELLEK 192 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCccchHHHHHHhhhHHHHhcCHHHHHHHHHH
Confidence 9999998876654 33344444 7889999999999999997733 3 3556666667677788999999999999
Q ss_pred HHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788 247 GLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ 320 (365)
Q Consensus 247 al~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~ 320 (365)
++...+.. ....+..++..+...|.++.|...+..++...|.....+...+..+...|..+.+...+.+++..
T Consensus 193 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 193 ALKLNPDD-DAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHhhCccc-chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99888873 24456777888889999999999999999999987777777777777777899999999999973
No 155
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.65 E-value=0.00018 Score=61.37 Aligned_cols=225 Identities=16% Similarity=0.122 Sum_probs=172.6
Q ss_pred ccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--cCC-CHHHHHHHHHHHHHhCCHH
Q psy17788 125 ATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVR--CND-ETKVYMNMMEIYAASAQIR 201 (365)
Q Consensus 125 ~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~--~~~-~~~~~~~l~~~~~~~g~~~ 201 (365)
.+.+..+...+..++...+.. ................+....+...+..++. ..+ ....+..++.++...+.+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (291)
T COG0457 36 LGELAEALELLEEALELLPNS---DLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYE 112 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccc---cchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHH
Confidence 456666777777777755521 1245666777778888899999999999986 333 4567788899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHH-HHHHcCChHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHHHcCCHHHHHHH
Q psy17788 202 DLESTVKLLLKKAGQTHSSVNIYLQCAT-LLLRLGQKDTARHILQRGLNNLPP-AVHVTLITRFALAENKFGDASRAQAL 279 (365)
Q Consensus 202 ~A~~~~~~al~~~~~~~~~~~~~~~~a~-~~~~~g~~~~A~~~l~ral~~~p~-~~~~~~~~~~a~~~~~~g~~e~A~~~ 279 (365)
.+...+..++... +.+...+..... ++...|+++.|...|.+++...|. ......+...+..+...++.+.+...
T Consensus 113 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 189 (291)
T COG0457 113 EALELLEKALALD---PDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALEL 189 (291)
T ss_pred HHHHHHHHHHcCC---CCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHH
Confidence 9999999999876 555555566666 899999999999999999886662 33445555556667789999999999
Q ss_pred HHHHHHhCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy17788 280 LEHTLTSYPA-RVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYV 358 (365)
Q Consensus 280 fe~~l~~~P~-~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v 358 (365)
+.+++...|. ....+...+..+...|.+..+...+..++.. .+............+. ..|..+.+.....+++..-
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 190 LEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLL-ELGRYEEALEALEKALELD 266 (291)
T ss_pred HHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHH-HcCCHHHHHHHHHHHHHhC
Confidence 9999999999 6899999999999999999999999999973 2222233444444444 6788888888888877653
No 156
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.65 E-value=4e-06 Score=82.95 Aligned_cols=159 Identities=14% Similarity=0.117 Sum_probs=77.5
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHH--Hcc---cCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHH
Q psy17788 99 DGFDRMLLGQPNNSELWVKYMAYH--LQA---TEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQEC 173 (365)
Q Consensus 99 ~~fe~~l~~~p~~~~~w~~~~~~~--~~~---~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v 173 (365)
...+++...-|.+..+|-.|+... +.. ++...|+.+|++|+...| ++..+|..++..+.....+
T Consensus 324 ~e~~~~~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP-----~~a~a~A~la~~~~~~~~~------ 392 (517)
T PRK10153 324 RMQERLQQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEP-----DFTYAQAEKALADIVRHSQ------ 392 (517)
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHHHhc------
Confidence 334445555677777777666654 222 236677777777777777 5555554433322111000
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q psy17788 174 LHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPP 253 (365)
Q Consensus 174 ~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~ 253 (365)
.+. ..+....+.....+++... ..+.++.++..++..+...|++++|...|++|+...|+
T Consensus 393 -------~~~------------~~~~l~~a~~~~~~a~al~-~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps 452 (517)
T PRK10153 393 -------QPL------------DEKQLAALSTELDNIVALP-ELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS 452 (517)
T ss_pred -------CCc------------cHHHHHHHHHHHHHhhhcc-cCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Confidence 000 0001122222233332210 01334455555555555555555555555555555553
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q psy17788 254 AVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARV 291 (365)
Q Consensus 254 ~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~ 291 (365)
...+..+|.++...|++++|...|++++..+|..+
T Consensus 453 ---~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 453 ---WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 33444455555555555555555555555555543
No 157
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.65 E-value=1.6e-07 Score=66.59 Aligned_cols=67 Identities=13% Similarity=0.256 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCC
Q psy17788 183 ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLG-QKDTARHILQRGLNNLP 252 (365)
Q Consensus 183 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g-~~~~A~~~l~ral~~~p 252 (365)
+..+|..++.++...|++++|+..|+++++.. |.++.+|..+|.++...| ++++|+..++++++..|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~---p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD---PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS---TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 35678899999999999999999999999998 999999999999999999 79999999999998877
No 158
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.65 E-value=1.4e-06 Score=79.91 Aligned_cols=184 Identities=13% Similarity=0.117 Sum_probs=123.8
Q ss_pred HHHHhCCHHHHHHHHHHHHHcCC-------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCC---CCcHHHHHHHHH
Q psy17788 160 LEHLYGTKESLQECLHEAVRCND-------ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQT---HSSVNIYLQCAT 229 (365)
Q Consensus 160 l~~~~g~~~~a~~v~~ral~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~a~ 229 (365)
.+...|+++.|...|.++..... ....|...+.+|.+. ++++|+.+|++++..+... ..-..+...+|.
T Consensus 44 ~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~ 122 (282)
T PF14938_consen 44 CFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAE 122 (282)
T ss_dssp HHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34455666677777777654421 122455556666555 8999999999999876321 223568889999
Q ss_pred HHHHc-CChHHHHHHHHHHHhcCCC----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----h---hHHHHH
Q psy17788 230 LLLRL-GQKDTARHILQRGLNNLPP----AVHVTLITRFALAENKFGDASRAQALLEHTLTSYPAR----V---DVWGVY 297 (365)
Q Consensus 230 ~~~~~-g~~~~A~~~l~ral~~~p~----~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~----~---~~w~~~ 297 (365)
+|... |+++.|+.+|++|+..... .....++.+.|.++.+.|++++|..+|+++....-++ . ..+...
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 99998 9999999999999987422 1235688899999999999999999999998764322 2 335556
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCC--CCCCCcHHHHHHHHHHHHhcCCHH
Q psy17788 298 VDMLVKSDRVDLGRQVIQRAVTQK--LPPKKLKPLYMKWLKLEEQYGDAE 345 (365)
Q Consensus 298 ~~~~~~~g~~~~Ar~~~eral~~~--l~~~~~~~~~~~~l~~e~~~G~~~ 345 (365)
+-|+...||+..|+..|++..... +....--.+....++... .||.+
T Consensus 203 ~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~-~~D~e 251 (282)
T PF14938_consen 203 ILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE-EGDVE 251 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH-TT-CC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH-hCCHH
Confidence 668888999999999999998732 222222335555566543 45544
No 159
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.64 E-value=2.5e-07 Score=64.83 Aligned_cols=53 Identities=26% Similarity=0.343 Sum_probs=20.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy17788 266 AENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAV 318 (365)
Q Consensus 266 ~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral 318 (365)
.+...|+++.|+..|++++..+|++.++|..++.++...|++++|+.+|++++
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333333333
No 160
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.64 E-value=8.9e-08 Score=67.10 Aligned_cols=62 Identities=21% Similarity=0.165 Sum_probs=32.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy17788 227 CATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPAR 290 (365)
Q Consensus 227 ~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~ 290 (365)
+|..++..|++++|+.+|++++...|.+ ..++..+|.++...|++++|..+|++++..+|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDN--PEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTH--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 4455555555555555555555555552 3444444555555555555555555555555554
No 161
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=1.2e-06 Score=78.42 Aligned_cols=120 Identities=15% Similarity=0.128 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcC---CHHHH
Q psy17788 200 IRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFG---DASRA 276 (365)
Q Consensus 200 ~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g---~~e~A 276 (365)
.+....-++.-+... |++..-|..+|.+|+.+|++..|...|.+|++..|++ ..++..+|..++... ...++
T Consensus 138 ~~~l~a~Le~~L~~n---P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n--~~~~~g~aeaL~~~a~~~~ta~a 212 (287)
T COG4235 138 MEALIARLETHLQQN---PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDN--PEILLGLAEALYYQAGQQMTAKA 212 (287)
T ss_pred HHHHHHHHHHHHHhC---CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCCcccHHH
Confidence 455566667777777 9999999999999999999999999999999999996 456677788766543 35689
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q psy17788 277 QALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPK 325 (365)
Q Consensus 277 ~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~ 325 (365)
..+|.+++..+|.++...+.++..+...|++.+|...|+..+. .+|+.
T Consensus 213 ~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~-~lp~~ 260 (287)
T COG4235 213 RALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLD-LLPAD 260 (287)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh-cCCCC
Confidence 9999999999999999999999999999999999999999998 44544
No 162
>KOG2396|consensus
Probab=98.63 E-value=1.4e-06 Score=82.52 Aligned_cols=99 Identities=15% Similarity=0.147 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCC-HHHHHH
Q psy17788 200 IRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGD-ASRAQA 278 (365)
Q Consensus 200 ~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~-~e~A~~ 278 (365)
..+...+|++++.+| ++++++|..|+.+..+.+.+.+...+|..+|..+|+++.++ ...|..++..+. .+.||.
T Consensus 87 ~~rIv~lyr~at~rf---~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLW--I~aA~wefe~n~ni~saRa 161 (568)
T KOG2396|consen 87 PNRIVFLYRRATNRF---NGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLW--IYAAKWEFEINLNIESARA 161 (568)
T ss_pred HHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhH--HhhhhhHHhhccchHHHHH
Confidence 356678999999999 99999999999999999999999999999999999976655 555887777655 999999
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHh
Q psy17788 279 LLEHTLTSYPARVDVWGVYVDMLVK 303 (365)
Q Consensus 279 ~fe~~l~~~P~~~~~w~~~~~~~~~ 303 (365)
+|.++|+.+|+++.+|..|.+|+..
T Consensus 162 lflrgLR~npdsp~Lw~eyfrmEL~ 186 (568)
T KOG2396|consen 162 LFLRGLRFNPDSPKLWKEYFRMELM 186 (568)
T ss_pred HHHHHhhcCCCChHHHHHHHHHHHH
Confidence 9999999999999999999988754
No 163
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.63 E-value=2.1e-06 Score=80.09 Aligned_cols=147 Identities=16% Similarity=0.252 Sum_probs=118.8
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHHcCC------------hHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCH
Q psy17788 206 TVKLLLKKAGQTHSSVNIYLQCATLLLRLGQ------------KDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDA 273 (365)
Q Consensus 206 ~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~------------~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~ 273 (365)
-|++.++.. |.+...|+.++.+-...-. .+.-+.+|++||+.+|.+ ..++..+..+..+..+.
T Consensus 7 el~~~v~~~---P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~--~~L~l~~l~~~~~~~~~ 81 (321)
T PF08424_consen 7 ELNRRVREN---PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDS--ERLLLGYLEEGEKVWDS 81 (321)
T ss_pred HHHHHHHhC---cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCCH
Confidence 356666666 8888888888887655422 356678999999999974 66777778888888899
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCC----------------CCcHHHHHHH
Q psy17788 274 SRAQALLEHTLTSYPARVDVWGVYVDMLVK---SDRVDLGRQVIQRAVTQKLPP----------------KKLKPLYMKW 334 (365)
Q Consensus 274 e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~---~g~~~~Ar~~~eral~~~l~~----------------~~~~~~~~~~ 334 (365)
+.....+++++..+|+++.+|..|+++... .-.++.++.+|.+++. .+.. ..+..++.++
T Consensus 82 ~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~-~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~ 160 (321)
T PF08424_consen 82 EKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLR-ALSRRRSGRMTSHPDLPELEEFMLYVFLRL 160 (321)
T ss_pred HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH-HHHHhhccccccccchhhHHHHHHHHHHHH
Confidence 999999999999999999999999998866 3478999999999998 2211 1345689999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHH
Q psy17788 335 LKLEEQYGDAEAVENVKKEIEQYV 358 (365)
Q Consensus 335 l~~e~~~G~~~~a~~v~~kA~~~v 358 (365)
..|.+..|-.+.|..+++-.+++-
T Consensus 161 ~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 161 CRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHCCchHHHHHHHHHHHHHH
Confidence 999999999999999998888763
No 164
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.62 E-value=9.2e-07 Score=74.60 Aligned_cols=97 Identities=8% Similarity=0.045 Sum_probs=71.1
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHH
Q psy17788 220 SVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV-HVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYV 298 (365)
Q Consensus 220 ~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~-~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~ 298 (365)
....|..+|..+...|++++|...|.+++...|+.. ...++..+|.++...|+++.|+..|++++..+|.....|..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 356777888888888888888888888877765532 2346777788888888888888888888888888877777777
Q ss_pred HHHH-------hcCChHHHHHHHHH
Q psy17788 299 DMLV-------KSDRVDLGRQVIQR 316 (365)
Q Consensus 299 ~~~~-------~~g~~~~Ar~~~er 316 (365)
.++. ..|+++.|...|++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHH
Confidence 7776 66776644444443
No 165
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.60 E-value=2e-06 Score=69.19 Aligned_cols=109 Identities=13% Similarity=0.047 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHH-HHHH
Q psy17788 184 TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVT-LITR 262 (365)
Q Consensus 184 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~-~~~~ 262 (365)
...+..-+.-..+.|++.+|++.|+.+..+++..+-...+-+.++..++..|+++.|...++|-++.+|.++.+. ++..
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 345555666677889999999999999999866666778899999999999999999999999999999877644 5555
Q ss_pred HHHHHHHcCC---------------HHHHHHHHHHHHHhCCCChh
Q psy17788 263 FALAENKFGD---------------ASRAQALLEHTLTSYPARVD 292 (365)
Q Consensus 263 ~a~~~~~~g~---------------~e~A~~~fe~~l~~~P~~~~ 292 (365)
.|..++.... ...|...|++++..+|++..
T Consensus 90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence 6666666554 66888999999999998754
No 166
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.60 E-value=1.7e-06 Score=68.34 Aligned_cols=98 Identities=19% Similarity=0.180 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---ChhHHHHH
Q psy17788 222 NIYLQCATLLLRLGQKDTARHILQRGLNNLPP-AVHVTLITRFALAENKFGDASRAQALLEHTLTSYPA---RVDVWGVY 297 (365)
Q Consensus 222 ~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~-~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~---~~~~w~~~ 297 (365)
.+++.++..+-..|+.++|..+|++++...+. ......++.+|..+...|++++|..+|++++..+|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 46777788888888888888888888876433 223557777888888888888888888888888887 66777777
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q psy17788 298 VDMLVKSDRVDLGRQVIQRAVT 319 (365)
Q Consensus 298 ~~~~~~~g~~~~Ar~~~eral~ 319 (365)
+.++...|+.++|...+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888888888888877776
No 167
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.59 E-value=2.4e-07 Score=68.54 Aligned_cols=81 Identities=19% Similarity=0.168 Sum_probs=46.5
Q ss_pred hCCHHHHHHHHHHHHHHhcCCCC--cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHH
Q psy17788 197 SAQIRDLESTVKLLLKKAGQTHS--SVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDAS 274 (365)
Q Consensus 197 ~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e 274 (365)
.|+++.|+.+|++++... |. +..+|+.+|.++++.|++++|..++++ +...|.. +.+...+|.++.++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~---~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~--~~~~~l~a~~~~~l~~y~ 75 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELD---PTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN--PDIHYLLARCLLKLGKYE 75 (84)
T ss_dssp TT-HHHHHHHHHHHHHHH---CGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH--HHHHHHHHHHHHHTT-HH
T ss_pred CccHHHHHHHHHHHHHHC---CCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC--HHHHHHHHHHHHHhCCHH
Confidence 456666666666666665 42 445566666666666666666666666 4444442 333344466666666666
Q ss_pred HHHHHHHHH
Q psy17788 275 RAQALLEHT 283 (365)
Q Consensus 275 ~A~~~fe~~ 283 (365)
+|+.+|+++
T Consensus 76 eAi~~l~~~ 84 (84)
T PF12895_consen 76 EAIKALEKA 84 (84)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcC
Confidence 666666553
No 168
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.59 E-value=2.4e-06 Score=78.41 Aligned_cols=163 Identities=13% Similarity=0.168 Sum_probs=106.6
Q ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHH---HHH
Q psy17788 114 LWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVY---MNM 190 (365)
Q Consensus 114 ~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~---~~l 190 (365)
+-+--+.++...|+++.|..++.+. ++.+.....+.++...++.+.|.+.++.+-+.+++..+. ..+
T Consensus 104 ~~~~~A~i~~~~~~~~~AL~~l~~~----------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~aw 173 (290)
T PF04733_consen 104 VQLLAATILFHEGDYEEALKLLHKG----------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAW 173 (290)
T ss_dssp HHHHHHHHHCCCCHHHHHHCCCTTT----------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcc----------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 3334444456667777666555432 234555566677778888888888888877766554432 222
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHc
Q psy17788 191 MEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKF 270 (365)
Q Consensus 191 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~ 270 (365)
+.++.-.+++.+|.-+|+++..++ +.++.+....+.+++..|++++|..++..++...|++ ..++...+.+....
T Consensus 174 v~l~~g~e~~~~A~y~f~El~~~~---~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~--~d~LaNliv~~~~~ 248 (290)
T PF04733_consen 174 VNLATGGEKYQDAFYIFEELSDKF---GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND--PDTLANLIVCSLHL 248 (290)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHCCS-----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH--HHHHHHHHHHHHHT
T ss_pred HHHHhCchhHHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC--HHHHHHHHHHHHHh
Confidence 222222335788888888887777 6778888888888888888888888888888888775 45667777777777
Q ss_pred CCH-HHHHHHHHHHHHhCCCCh
Q psy17788 271 GDA-SRAQALLEHTLTSYPARV 291 (365)
Q Consensus 271 g~~-e~A~~~fe~~l~~~P~~~ 291 (365)
|+. +.+..++.++...+|+.+
T Consensus 249 gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 249 GKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp T-TCHHHHHHHHHCHHHTTTSH
T ss_pred CCChhHHHHHHHHHHHhCCCCh
Confidence 877 566677777777788753
No 169
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.59 E-value=5.7e-06 Score=81.86 Aligned_cols=159 Identities=11% Similarity=0.010 Sum_probs=117.8
Q ss_pred CHHHHHHH--HHHHHHhC---CHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHh
Q psy17788 183 ETKVYMNM--MEIYAASA---QIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLG--------QKDTARHILQRGLN 249 (365)
Q Consensus 183 ~~~~~~~l--~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g--------~~~~A~~~l~ral~ 249 (365)
+..+|-.+ +..|...+ ....|+.+|+++++.. |++..+|..++..+.... +...+.....+++.
T Consensus 336 ~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld---P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 336 QGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE---PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 44566444 43444443 3789999999999999 999999988877665432 23455666667666
Q ss_pred c--CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCc
Q psy17788 250 N--LPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKL 327 (365)
Q Consensus 250 ~--~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~ 327 (365)
. .|.. ..++..+|......|++++|...|++++..+| +...|..+|.++...|+.++|...|++|+.+ .|...
T Consensus 413 l~~~~~~--~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~p 487 (517)
T PRK10153 413 LPELNVL--PRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGEN 487 (517)
T ss_pred cccCcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCc
Confidence 4 4443 35666677777888999999999999999999 4789999999999999999999999999965 56656
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHH
Q psy17788 328 KPLYMKWLKLEEQYGDAEAVENVKK 352 (365)
Q Consensus 328 ~~~~~~~l~~e~~~G~~~~a~~v~~ 352 (365)
...|..=+.|+. +.+.+.-.+.
T Consensus 488 t~~~~~~~~f~~---~~~~~~~~~~ 509 (517)
T PRK10153 488 TLYWIENLVFQT---SVETVVPYLY 509 (517)
T ss_pred hHHHHHhccccc---cHHHHHHHHH
Confidence 677777777743 4444443333
No 170
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.57 E-value=2.3e-06 Score=77.20 Aligned_cols=100 Identities=14% Similarity=0.121 Sum_probs=87.8
Q ss_pred cHHHHHHHHHHH-HHcCChHHHHHHHHHHHhcCCCcch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---ChhHH
Q psy17788 220 SVNIYLQCATLL-LRLGQKDTARHILQRGLNNLPPAVH-VTLITRFALAENKFGDASRAQALLEHTLTSYPA---RVDVW 294 (365)
Q Consensus 220 ~~~~~~~~a~~~-~~~g~~~~A~~~l~ral~~~p~~~~-~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~---~~~~w 294 (365)
+...++..+..+ ...|++++|...|+..+...|+... ..+++.+|.+++..|+++.|+..|++++..+|+ .+++|
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 457777777765 6679999999999999999998743 346667799999999999999999999999887 47889
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788 295 GVYVDMLVKSDRVDLGRQVIQRAVT 319 (365)
Q Consensus 295 ~~~~~~~~~~g~~~~Ar~~~eral~ 319 (365)
..++.++...|+.+.|+.+|++++.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998
No 171
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.57 E-value=2.5e-06 Score=71.94 Aligned_cols=123 Identities=11% Similarity=0.000 Sum_probs=99.8
Q ss_pred ChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hhHHHHHHHHHHhcCChHHHHH
Q psy17788 236 QKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPAR---VDVWGVYVDMLVKSDRVDLGRQ 312 (365)
Q Consensus 236 ~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~---~~~w~~~~~~~~~~g~~~~Ar~ 312 (365)
.+..+...+...++..+.......+...|.++...|+++.|...|++++...|+. ..+|..++.++...|++++|+.
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~ 93 (168)
T CHL00033 14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALE 93 (168)
T ss_pred ccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 4566667776666666666677888999999999999999999999999887764 4589999999999999999999
Q ss_pred HHHHHHhCCCCCCCcHHHHHHHHHHHH-------hcCCHHHHHHHHHHHHHHHHhh
Q psy17788 313 VIQRAVTQKLPPKKLKPLYMKWLKLEE-------QYGDAEAVENVKKEIEQYVRNS 361 (365)
Q Consensus 313 ~~eral~~~l~~~~~~~~~~~~l~~e~-------~~G~~~~a~~v~~kA~~~v~~~ 361 (365)
+|++++.. . +.....|...+.+.. ..|+.+.+...+.+|+.+++..
T Consensus 94 ~~~~Al~~--~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a 146 (168)
T CHL00033 94 YYFQALER--N-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQA 146 (168)
T ss_pred HHHHHHHh--C-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 99999974 3 334455666566666 7899999999999988887765
No 172
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.56 E-value=6.7e-05 Score=80.04 Aligned_cols=207 Identities=12% Similarity=0.054 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHhhccCcc---c-cchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCH----
Q psy17788 113 ELWVKYMAYHLQATEIEKARSIARRALTVINIRN---E-EDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDET---- 184 (365)
Q Consensus 113 ~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~---~-~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~---- 184 (365)
.+....+..+...|++++|...+.++....+... . .....+......+....|+++.+...+++++...+..
T Consensus 410 ~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 489 (903)
T PRK04841 410 RLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYS 489 (903)
T ss_pred chHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHH
Confidence 3445556666788999999999998877543211 0 0112222334455667899999999999998854421
Q ss_pred --HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCC-CC--cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-----c
Q psy17788 185 --KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQT-HS--SVNIYLQCATLLLRLGQKDTARHILQRGLNNLPP-----A 254 (365)
Q Consensus 185 --~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~--~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~-----~ 254 (365)
..+..++.++...|++++|...+.+++...... .. ...++..++.++...|+++.|...+++++..... .
T Consensus 490 ~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~ 569 (903)
T PRK04841 490 RIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQL 569 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccc
Confidence 234556777888999999999999998764211 11 1245667788899999999999999999875321 1
Q ss_pred c-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----ChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788 255 V-HVTLITRFALAENKFGDASRAQALLEHTLTSYPA-----RVDVWGVYVDMLVKSDRVDLGRQVIQRAVT 319 (365)
Q Consensus 255 ~-~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~-----~~~~w~~~~~~~~~~g~~~~Ar~~~eral~ 319 (365)
. ...++...|.++...|+++.|...++.++..... ....+..++.++...|+.+.|...++++..
T Consensus 570 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 570 PMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 1233445677888899999999999999875332 234455677788899999999999988864
No 173
>PRK11906 transcriptional regulator; Provisional
Probab=98.51 E-value=4.7e-06 Score=79.18 Aligned_cols=147 Identities=11% Similarity=0.079 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHc---------CChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHc
Q psy17788 200 IRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRL---------GQKDTARHILQRGLNNLPPAVHVTLITRFALAENKF 270 (365)
Q Consensus 200 ~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~---------g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~ 270 (365)
.+.|..+|.+++.+-...|.....+..++.++... ....+|..+-.+|++..|.++. ....+|.+....
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~--a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGK--ILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHhh
Confidence 45677778888822211266666666666665543 1345677788888888888644 344456666677
Q ss_pred CCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCc-HHHHHHHHHHHHhcCCHHHHHH
Q psy17788 271 GDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKL-KPLYMKWLKLEEQYGDAEAVEN 349 (365)
Q Consensus 271 g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~-~~~~~~~l~~e~~~G~~~~a~~ 349 (365)
|+++.|...|++++..+|+..++|..++....-.|+.++|+..+++++.+ .|.++ ..+.+.|++.+..+|- +.+..
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~~~-~~~~~ 428 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPNPL-KNNIK 428 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCCch-hhhHH
Confidence 77888888888888888888888888888888888888888888888864 44443 3467777766655443 33443
Q ss_pred HH
Q psy17788 350 VK 351 (365)
Q Consensus 350 v~ 351 (365)
.|
T Consensus 429 ~~ 430 (458)
T PRK11906 429 LY 430 (458)
T ss_pred HH
Confidence 33
No 174
>PRK11906 transcriptional regulator; Provisional
Probab=98.50 E-value=1.5e-05 Score=75.73 Aligned_cols=125 Identities=14% Similarity=0.086 Sum_probs=65.3
Q ss_pred CHHHHHHHHHHHH---hhccCccccchHHHHHHHHHHHHH-hC------CHHHHHHHHHHHHHcCCC-HHHHHHHHHHHH
Q psy17788 127 EIEKARSIARRAL---TVINIRNEEDRLNVWTSLLNLEHL-YG------TKESLQECLHEAVRCNDE-TKVYMNMMEIYA 195 (365)
Q Consensus 127 ~~e~A~~~~~raL---~~~p~~~~~~~~~~w~~~~~l~~~-~g------~~~~a~~v~~ral~~~~~-~~~~~~l~~~~~ 195 (365)
..+.|..+|.||+ ...|. ......|.++..+... +| ....|...-++|++++|. ..++..++.++.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~---~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~ 349 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTL---KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITG 349 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcc---cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3566777788888 54441 1222233333332221 11 233455555555555542 334455555555
Q ss_pred HhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchH
Q psy17788 196 ASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHV 257 (365)
Q Consensus 196 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~ 257 (365)
..|+++.|..+|++++... |+++.+|+.+|.++.-.|+.++|+..+++|++..|....+
T Consensus 350 ~~~~~~~a~~~f~rA~~L~---Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 350 LSGQAKVSHILFEQAKIHS---TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred hhcchhhHHHHHHHHhhcC---CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 5555555666666665555 5555666666655555566666666666666555554333
No 175
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.47 E-value=3.5e-06 Score=74.69 Aligned_cols=104 Identities=17% Similarity=0.258 Sum_probs=89.8
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchH-HHHHHHHHHHHH
Q psy17788 191 MEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHV-TLITRFALAENK 269 (365)
Q Consensus 191 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~-~~~~~~a~~~~~ 269 (365)
+--+.+.|++..|...|..-++.++..+-.+.+++-||..++.+|+++.|..+|.++++..|+++.. ..++++|.+...
T Consensus 148 A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~ 227 (262)
T COG1729 148 ALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGR 227 (262)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH
Confidence 3334678999999999999999994444457788999999999999999999999999999886654 788999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCChhHH
Q psy17788 270 FGDASRAQALLEHTLTSYPARVDVW 294 (365)
Q Consensus 270 ~g~~e~A~~~fe~~l~~~P~~~~~w 294 (365)
+|+.+.|+..|+++++.||+...+-
T Consensus 228 l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 228 LGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred hcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 9999999999999999999875543
No 176
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.46 E-value=5.1e-07 Score=63.72 Aligned_cols=35 Identities=31% Similarity=0.350 Sum_probs=12.5
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q psy17788 218 HSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLP 252 (365)
Q Consensus 218 ~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p 252 (365)
|.+..+++.++.++...|++++|+.++++++...|
T Consensus 22 p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 22 PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 33333333333333333333333333333333333
No 177
>KOG0543|consensus
Probab=98.44 E-value=3.4e-06 Score=78.33 Aligned_cols=129 Identities=12% Similarity=0.068 Sum_probs=108.4
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhcCC-C-----------CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcch
Q psy17788 189 NMMEIYAASAQIRDLESTVKLLLKKAGQT-H-----------SSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVH 256 (365)
Q Consensus 189 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~-----------~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~ 256 (365)
.-++.|.+.|++..|...|++++...... + .-..++++++.++.+.+.+..|+....++|...|++
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N-- 290 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN-- 290 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc--
Confidence 44677888899999999999988764210 0 113468999999999999999999999999999995
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCh-HHHHHHHHHHHh
Q psy17788 257 VTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRV-DLGRQVIQRAVT 319 (365)
Q Consensus 257 ~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~-~~Ar~~~eral~ 319 (365)
+..+++-|.++...|+++.|+..|+++++..|.|-.+-..++.+-.+...+ ++.+++|.+++.
T Consensus 291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 291 VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 778899999999999999999999999999999999999998887766544 455899999988
No 178
>KOG0543|consensus
Probab=98.39 E-value=6.3e-06 Score=76.54 Aligned_cols=125 Identities=15% Similarity=0.203 Sum_probs=100.3
Q ss_pred HHHHHhCCHHHHHHHHHHHHHcCC----------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHH
Q psy17788 159 NLEHLYGTKESLQECLHEAVRCND----------------ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVN 222 (365)
Q Consensus 159 ~l~~~~g~~~~a~~v~~ral~~~~----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 222 (365)
+.+.+.|++..|..-|++|+...+ ...++++++.+|.+.+.+..|+...+++|... |.|++
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~---~~N~K 292 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD---PNNVK 292 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC---CCchh
Confidence 344555667777777777765432 23478899999999999999999999999998 99999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCC
Q psy17788 223 IYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDA-SRAQALLEHTLTSYP 288 (365)
Q Consensus 223 ~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~-e~A~~~fe~~l~~~P 288 (365)
+.+..|.++...|+++.|+..|+++++..|.+..+. ..++.|-.+.... ++.+.+|.+++...+
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~--~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALKLEPSNKAAR--AELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999986544 4556665555443 456888888887655
No 179
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.39 E-value=0.00014 Score=64.03 Aligned_cols=184 Identities=12% Similarity=0.003 Sum_probs=114.9
Q ss_pred CHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCH--HHHH
Q psy17788 111 NSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDET--KVYM 188 (365)
Q Consensus 111 ~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~--~~~~ 188 (365)
.+..|+.-+...++.|++++|...|+.....+|+.+..+ .+-+.++....+.++++.|+..++|.++.+|.. ..|.
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~--qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~ 110 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSE--QAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA 110 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccH--HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence 457788888888888889999888888888888876553 344445555566778888888888888888743 2333
Q ss_pred HHHHHHHH----------hCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHH
Q psy17788 189 NMMEIYAA----------SAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVT 258 (365)
Q Consensus 189 ~l~~~~~~----------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~ 258 (365)
.++..+.. ..-...|..-|+..+.+| |++..+-.. ...+..+...+ ..
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry---PnS~Ya~dA--------------~~~i~~~~d~L-----A~ 168 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY---PNSRYAPDA--------------KARIVKLNDAL-----AG 168 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC---CCCcchhhH--------------HHHHHHHHHHH-----HH
Confidence 33222221 112345667777888888 665433211 11111111111 11
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788 259 LITRFALAENKFGDASRAQALLEHTLTSYPAR---VDVWGVYVDMLVKSDRVDLGRQVIQRAVT 319 (365)
Q Consensus 259 ~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~---~~~w~~~~~~~~~~g~~~~Ar~~~eral~ 319 (365)
-=+..|.++.+.|.+..|...|+.+++.+|+. .+.+..+...|...|-.++|... .++|.
T Consensus 169 ~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~-~~vl~ 231 (254)
T COG4105 169 HEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKT-AKVLG 231 (254)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHH-HHHHH
Confidence 11344778888888888888888888887765 34566666677777777666553 44444
No 180
>KOG2376|consensus
Probab=98.38 E-value=0.00032 Score=68.06 Aligned_cols=255 Identities=16% Similarity=0.152 Sum_probs=158.0
Q ss_pred HHHhhcCCC-CHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCc------c-c---cchHHHHHHHHHHHHHhCCHHHH
Q psy17788 102 DRMLLGQPN-NSELWVKYMAYHLQATEIEKARSIARRALTVINIR------N-E---EDRLNVWTSLLNLEHLYGTKESL 170 (365)
Q Consensus 102 e~~l~~~p~-~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~------~-~---~~~~~~w~~~~~l~~~~g~~~~a 170 (365)
.+.+...|. +-.+.+..+-.++..|++.+|.++++.|+.+.-.. . + .+-..+-..++..+-..|+.++|
T Consensus 164 ~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 164 LQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred HHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 334444455 55788888888999999999999999995532110 0 0 01123445555566788999999
Q ss_pred HHHHHHHHHcCCCHH--------------------------------------------------HHHHHHHHHHHhCCH
Q psy17788 171 QECLHEAVRCNDETK--------------------------------------------------VYMNMMEIYAASAQI 200 (365)
Q Consensus 171 ~~v~~ral~~~~~~~--------------------------------------------------~~~~l~~~~~~~g~~ 200 (365)
..+|...++.++... ++...+.+-.-.+..
T Consensus 244 ~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~ 323 (652)
T KOG2376|consen 244 SSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKM 323 (652)
T ss_pred HHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 999999988765211 111111111122333
Q ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Q psy17788 201 RDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALL 280 (365)
Q Consensus 201 ~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~f 280 (365)
+.++++.......+ |...---........+......|..++...-+.+|.. ...+....+++....|+++.|..++
T Consensus 324 ~q~r~~~a~lp~~~---p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~-s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 324 DQVRELSASLPGMS---PESLFPILLQEATKVREKKHKKAIELLLQFADGHPEK-SKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred HHHHHHHHhCCccC---chHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCch-hHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 33333332222221 2222222222222333346778888888888888875 2345556688999999999999999
Q ss_pred HHHHHh-------CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh---CCCC-CCCcHHHHHHHHHHHHhcCCHHHHHH
Q psy17788 281 EHTLTS-------YPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVT---QKLP-PKKLKPLYMKWLKLEEQYGDAEAVEN 349 (365)
Q Consensus 281 e~~l~~-------~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~---~~l~-~~~~~~~~~~~l~~e~~~G~~~~a~~ 349 (365)
...+.. ....+.+-.....++.+-++.+.|..++..|+. ...+ ...-..+|...+.|+..+|+.+++..
T Consensus 400 ~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s 479 (652)
T KOG2376|consen 400 SLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASS 479 (652)
T ss_pred HHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHH
Confidence 843321 112233444445667788888888888888876 1111 23345678889999999999999999
Q ss_pred HHHHHHHHHHh
Q psy17788 350 VKKEIEQYVRN 360 (365)
Q Consensus 350 v~~kA~~~v~~ 360 (365)
+++..+++-.+
T Consensus 480 ~leel~k~n~~ 490 (652)
T KOG2376|consen 480 LLEELVKFNPN 490 (652)
T ss_pred HHHHHHHhCCc
Confidence 99988886544
No 181
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.37 E-value=1.5e-06 Score=61.36 Aligned_cols=67 Identities=25% Similarity=0.291 Sum_probs=55.6
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHH
Q psy17788 231 LLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVD 299 (365)
Q Consensus 231 ~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~ 299 (365)
++..|++++|..+|++++...|++ ..++..+|.++.+.|++++|+.++++++..+|+++.+|..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDN--PEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTS--HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 356788999999999999999985 5566778999999999999999999999999998888877664
No 182
>PRK15331 chaperone protein SicA; Provisional
Probab=98.37 E-value=2.7e-05 Score=64.14 Aligned_cols=99 Identities=9% Similarity=-0.011 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHH
Q psy17788 187 YMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALA 266 (365)
Q Consensus 187 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~ 266 (365)
...++--+.+.|++++|..+|.-++-.. +.++..|+.+|.++...|+++.|...|..|....++++... ...|.|
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d---~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~--f~agqC 114 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYD---FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPV--FFTGQC 114 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC---cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcc--chHHHH
Confidence 3445555678899999999999998877 88999999999999999999999999999988877766544 445999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCh
Q psy17788 267 ENKFGDASRAQALLEHTLTSYPARV 291 (365)
Q Consensus 267 ~~~~g~~e~A~~~fe~~l~~~P~~~ 291 (365)
+...|+.+.|+..|+.++. .|.+.
T Consensus 115 ~l~l~~~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 115 QLLMRKAAKARQCFELVNE-RTEDE 138 (165)
T ss_pred HHHhCCHHHHHHHHHHHHh-CcchH
Confidence 9999999999999999987 45543
No 183
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.35 E-value=0.00015 Score=63.97 Aligned_cols=167 Identities=12% Similarity=0.025 Sum_probs=121.7
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHH-HHH
Q psy17788 183 ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVT-LIT 261 (365)
Q Consensus 183 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~-~~~ 261 (365)
+...|..-+.-..+.|++++|.+.|+.+...++.+|-..++.+.++-.+++.++++.|+...+|-+...|.++.+. ++.
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 3445555566667889999999999999988866677788999999999999999999999999999999887654 222
Q ss_pred HHHHHHHH-----cCC---HHHHHHHHHHHHHhCCCChhH-----------------HHHHHHHHHhcCChHHHHHHHHH
Q psy17788 262 RFALAENK-----FGD---ASRAQALLEHTLTSYPARVDV-----------------WGVYVDMLVKSDRVDLGRQVIQR 316 (365)
Q Consensus 262 ~~a~~~~~-----~g~---~e~A~~~fe~~l~~~P~~~~~-----------------w~~~~~~~~~~g~~~~Ar~~~er 316 (365)
--|...+. ..| ...|..-|...+..+|++..+ =...+.+|.+.|.+..|..-+++
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~ 192 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE 192 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 22333332 122 236777888999999987322 12334778899999999999999
Q ss_pred HHhCCCC-CCCcHHHHHHHHHHHHhcCCHHHHHHH
Q psy17788 317 AVTQKLP-PKKLKPLYMKWLKLEEQYGDAEAVENV 350 (365)
Q Consensus 317 al~~~l~-~~~~~~~~~~~l~~e~~~G~~~~a~~v 350 (365)
++.. .+ ..........+...+...|-.+.|.++
T Consensus 193 v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~ 226 (254)
T COG4105 193 VLEN-YPDTSAVREALARLEEAYYALGLTDEAKKT 226 (254)
T ss_pred HHhc-cccccchHHHHHHHHHHHHHhCChHHHHHH
Confidence 9993 33 233445667777777778988877665
No 184
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.34 E-value=1.1e-05 Score=63.77 Aligned_cols=98 Identities=18% Similarity=0.183 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---cchHHHHHH
Q psy17788 186 VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPP---AVHVTLITR 262 (365)
Q Consensus 186 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~---~~~~~~~~~ 262 (365)
+++.++..+...|+.++|+.+|++++......+.-..+++.++..+...|++++|..+++.++...|. ...+. ..
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~--~f 80 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALR--VF 80 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHH--HH
Confidence 44555666666666666666666666642111223456666666666667777777766666666665 22222 33
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q psy17788 263 FALAENKFGDASRAQALLEHTLT 285 (365)
Q Consensus 263 ~a~~~~~~g~~e~A~~~fe~~l~ 285 (365)
++..+...|+.++|...+-.++.
T Consensus 81 ~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 35566666666666666665553
No 185
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.33 E-value=3.1e-06 Score=60.60 Aligned_cols=62 Identities=23% Similarity=0.314 Sum_probs=39.2
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcch
Q psy17788 192 EIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVH 256 (365)
Q Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~ 256 (365)
.+|.+.++++.|.+++++++..+ |.++..|..+|.++...|++.+|...|+++++..|....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD---PDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC---cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 45556666666666666666665 666666666666666666666666666666666665433
No 186
>KOG3785|consensus
Probab=98.32 E-value=0.00013 Score=66.71 Aligned_cols=175 Identities=17% Similarity=0.143 Sum_probs=114.8
Q ss_pred HHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCCH
Q psy17788 122 HLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCN-DETKVYMNMMEIYAASAQI 200 (365)
Q Consensus 122 ~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~-~~~~~~~~l~~~~~~~g~~ 200 (365)
++...++.-|+.+++-.+. -.+++.+..++|+++..+. .|++++|..+|.-+.+.. ++.++|..++-.+.-.|.+
T Consensus 32 fls~rDytGAislLefk~~--~~~EEE~~~~lWia~C~fh--LgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLN--LDREEEDSLQLWIAHCYFH--LGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHhcccchhHHHHHHHhhc--cchhhhHHHHHHHHHHHHh--hccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence 3456778888888886663 3445556899999887664 689999999999987654 4667888888877778888
Q ss_pred HHHHHHHHHHHHH-------------hcCC----------CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchH
Q psy17788 201 RDLESTVKLLLKK-------------AGQT----------HSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHV 257 (365)
Q Consensus 201 ~~A~~~~~~al~~-------------~~~~----------~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~ 257 (365)
.+|..+-.++-+. ++.. .+...--+.+|.+.+..-.+.+|+.+|.|.|...|....+
T Consensus 108 ~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~al 187 (557)
T KOG3785|consen 108 IEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIAL 187 (557)
T ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhh
Confidence 8887765544221 0000 0111223334444444555677777777777777765444
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q psy17788 258 TLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLV 302 (365)
Q Consensus 258 ~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~ 302 (365)
.++. |.|+++..-++-+..++.--|..+|+++-+.+..+-...
T Consensus 188 NVy~--ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~f 230 (557)
T KOG3785|consen 188 NVYM--ALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLF 230 (557)
T ss_pred HHHH--HHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHh
Confidence 4433 777777777777777777777777777666655554443
No 187
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.31 E-value=0.0028 Score=58.93 Aligned_cols=257 Identities=15% Similarity=0.114 Sum_probs=158.2
Q ss_pred HHHHHHHHhcCCCCCChHHHHHHhhcCCCCHHH-HHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHH
Q psy17788 82 IRQAEDELLQNGEPVSPDGFDRMLLGQPNNSEL-WVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNL 160 (365)
Q Consensus 82 ~~~~e~~l~~~~~p~a~~~fe~~l~~~p~~~~~-w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l 160 (365)
+-.....++.++...+..-|+.++. +|..-.+ .-.++---...|..+.|+.+.++|-..-|. -.=.|.+.+.-
T Consensus 124 lLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-----l~WA~~AtLe~ 197 (531)
T COG3898 124 LLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-----LPWAARATLEA 197 (531)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-----CchHHHHHHHH
Confidence 3344556666777788888887653 5543221 112222224678888888888888876662 22334444444
Q ss_pred HHHhCCHHHHHHHHHHHHHcC---CC-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q psy17788 161 EHLYGTKESLQECLHEAVRCN---DE-----TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLL 232 (365)
Q Consensus 161 ~~~~g~~~~a~~v~~ral~~~---~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~ 232 (365)
....|+++.|+++........ ++ ..+++.--....-.-+...|+..-..+++.. |.....-..-+..++
T Consensus 198 r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~---pdlvPaav~AAralf 274 (531)
T COG3898 198 RCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLA---PDLVPAAVVAARALF 274 (531)
T ss_pred HHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC---CccchHHHHHHHHHH
Confidence 455678888888877664432 11 1111111111111234666777777777776 777777777788888
Q ss_pred HcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHH
Q psy17788 233 RLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQ-ALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGR 311 (365)
Q Consensus 233 ~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~-~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar 311 (365)
+.|+..++-.+++.+.+..|.. .++.- ....+.|+.-..+ .-..++-..-|++.......+..-..-|++..||
T Consensus 275 ~d~~~rKg~~ilE~aWK~ePHP---~ia~l--Y~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~AR 349 (531)
T COG3898 275 RDGNLRKGSKILETAWKAEPHP---DIALL--YVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAAR 349 (531)
T ss_pred hccchhhhhhHHHHHHhcCCCh---HHHHH--HHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHH
Confidence 8888888888888888777753 23221 1223445433222 1222333456777777777777777788888888
Q ss_pred HHHHHHHhCCCCCCCcHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q psy17788 312 QVIQRAVTQKLPPKKLKPLYMKWLKLEEQY-GDAEAVENVKKEIEQ 356 (365)
Q Consensus 312 ~~~eral~~~l~~~~~~~~~~~~l~~e~~~-G~~~~a~~v~~kA~~ 356 (365)
.--+-+... . ....+|....++|... ||...++.-+.+|+.
T Consensus 350 a~Aeaa~r~--~--pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 350 AKAEAAARE--A--PRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHhhh--C--chhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 888877752 2 2567888888888776 999999888888764
No 188
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.29 E-value=5e-06 Score=59.47 Aligned_cols=66 Identities=23% Similarity=0.219 Sum_probs=40.6
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHH
Q psy17788 229 TLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGV 296 (365)
Q Consensus 229 ~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~ 296 (365)
.++.+.++++.|..++++++...|.+ +.++...|.++...|+++.|...|+++++..|++.++-..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDD--PELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCccc--chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 45566666666666666666666663 3445555666666666666666666666666665554433
No 189
>KOG3617|consensus
Probab=98.15 E-value=0.00079 Score=67.71 Aligned_cols=174 Identities=12% Similarity=0.077 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH----------HHHh-------cCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy17788 185 KVYMNMMEIYAASAQIRDLESTVKLL----------LKKA-------GQTHSSVNIYLQCATLLLRLGQKDTARHILQRG 247 (365)
Q Consensus 185 ~~~~~l~~~~~~~g~~~~A~~~~~~a----------l~~~-------~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ra 247 (365)
..|++++..+...++.+.|++.|+++ ++.+ .....++.+|.-.|.++...|+.+.|+.+|..|
T Consensus 859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 46788888888889999999988764 2222 112456778888999999999999999999887
Q ss_pred HhcCCC-------------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCC---hhHHH----
Q psy17788 248 LNNLPP-------------------AVHVTLITRFALAENKFGDASRAQALLEHTLT------SYPAR---VDVWG---- 295 (365)
Q Consensus 248 l~~~p~-------------------~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~------~~P~~---~~~w~---- 295 (365)
-....- ..+.-.-+.+|..|...|++.+|...|.++-. ....+ -.+|+
T Consensus 939 ~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~ 1018 (1416)
T KOG3617|consen 939 KDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALM 1018 (1416)
T ss_pred hhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhh
Confidence 553211 00123445678888889999999888876643 22211 22332
Q ss_pred -------HHHHHHHhcC-ChHHHHHHHHHH---------------------HhCCCCCCCcHHHHHHHHHHHHhcCCHHH
Q psy17788 296 -------VYVDMLVKSD-RVDLGRQVIQRA---------------------VTQKLPPKKLKPLYMKWLKLEEQYGDAEA 346 (365)
Q Consensus 296 -------~~~~~~~~~g-~~~~Ar~~~era---------------------l~~~l~~~~~~~~~~~~l~~e~~~G~~~~ 346 (365)
..+..|..+| ..++|..+|.+| |...|.+.....+..+-.+|-..+-.++.
T Consensus 1019 s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyek 1098 (1416)
T KOG3617|consen 1019 SGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEK 1098 (1416)
T ss_pred cCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHH
Confidence 2234455554 667776666543 12246677788899999999888888888
Q ss_pred HHHHHHHHHHHH
Q psy17788 347 VENVKKEIEQYV 358 (365)
Q Consensus 347 a~~v~~kA~~~v 358 (365)
|..++-.|.+|-
T Consensus 1099 AV~lL~~ar~~~ 1110 (1416)
T KOG3617|consen 1099 AVNLLCLAREFS 1110 (1416)
T ss_pred HHHHHHHHHHHH
Confidence 887766665554
No 190
>KOG1585|consensus
Probab=98.09 E-value=0.0017 Score=56.72 Aligned_cols=189 Identities=11% Similarity=0.103 Sum_probs=117.2
Q ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH-------HHhCCHHHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHH
Q psy17788 163 LYGTKESLQECLHEAVRCNDETKVYMNMMEIY-------AASAQIRDLESTVKLLLKKAGQ--THSSVNIYLQCATLLLR 233 (365)
Q Consensus 163 ~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~-------~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~~a~~~~~ 233 (365)
...++++|...+.+|+..+.+...|++-+..| .....+.++..+|+++...+.. +|+....-+.-+.=...
T Consensus 43 nAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~le 122 (308)
T KOG1585|consen 43 NAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALE 122 (308)
T ss_pred hhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh
Confidence 33455555555555554444333333333322 2334556666666666555421 13333333333333455
Q ss_pred cCChHHHHHHHHHHHhcCCCcc----hHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HhCCCChhHHHHHHHHHHh
Q psy17788 234 LGQKDTARHILQRGLNNLPPAV----HVTLITRFALAENKFGDASRAQALLEHTL------TSYPARVDVWGVYVDMLVK 303 (365)
Q Consensus 234 ~g~~~~A~~~l~ral~~~p~~~----~~~~~~~~a~~~~~~g~~e~A~~~fe~~l------~~~P~~~~~w~~~~~~~~~ 303 (365)
..+++.|+.+|+|++....... ...++.+.++++.+...+++|-..|.+-. ..+|.....+...+-++.-
T Consensus 123 nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~ 202 (308)
T KOG1585|consen 123 NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLY 202 (308)
T ss_pred cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhh
Confidence 6789999999999998764432 25677888888889999988877776543 3466666666666667777
Q ss_pred cCChHHHHHHHHHHHhC-CCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy17788 304 SDRVDLGRQVIQRAVTQ-KLPPKKLKPLYMKWLKLEEQYGDAEAVENVKK 352 (365)
Q Consensus 304 ~g~~~~Ar~~~eral~~-~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~ 352 (365)
..++..|..+|...... .+............+.++ ..||.+.+..|+.
T Consensus 203 ~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 203 AHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 77999999999987752 111122334566777776 4699999988764
No 191
>PRK15331 chaperone protein SicA; Provisional
Probab=98.08 E-value=4.8e-05 Score=62.71 Aligned_cols=100 Identities=10% Similarity=-0.091 Sum_probs=90.5
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHH
Q psy17788 218 HSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVY 297 (365)
Q Consensus 218 ~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~ 297 (365)
.......+.+|--++..|++++|..+|+-.....|.+ .+.+..+|.++...|+++.|...|..+....++++...+..
T Consensus 34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n--~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a 111 (165)
T PRK15331 34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYN--PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT 111 (165)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence 3345567788888899999999999999988888886 45778999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q psy17788 298 VDMLVKSDRVDLGRQVIQRAVT 319 (365)
Q Consensus 298 ~~~~~~~g~~~~Ar~~~eral~ 319 (365)
+.|+...|+...|+..|+-++.
T Consensus 112 gqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 112 GQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHhCCHHHHHHHHHHHHh
Confidence 9999999999999999999997
No 192
>KOG3617|consensus
Probab=98.04 E-value=0.0009 Score=67.30 Aligned_cols=226 Identities=13% Similarity=0.095 Sum_probs=148.4
Q ss_pred CCHHHHHHHHHHHHcccCHHHHHHHH--------HHHHhh---ccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy17788 110 NNSELWVKYMAYHLQATEIEKARSIA--------RRALTV---INIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAV 178 (365)
Q Consensus 110 ~~~~~w~~~~~~~~~~~~~e~A~~~~--------~raL~~---~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral 178 (365)
.|-.+|-.++....+..++|-|..+. -|||.. .| +....-.+ -+....|-.+.|..+|.+.-
T Consensus 755 kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~-----~e~eakvA--vLAieLgMlEeA~~lYr~ck 827 (1416)
T KOG3617|consen 755 KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNG-----EEDEAKVA--VLAIELGMLEEALILYRQCK 827 (1416)
T ss_pred hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCC-----cchhhHHH--HHHHHHhhHHHHHHHHHHHH
Confidence 35578999988888877766655443 233331 22 22233333 33445577888888888875
Q ss_pred HcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHH----------H
Q psy17788 179 RCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRG----------L 248 (365)
Q Consensus 179 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ra----------l 248 (365)
++ -.+-.+|...|.+++|.++-+.-=+ -.-...+++||..+...++.+.|+.+|+++ |
T Consensus 828 R~-------DLlNKlyQs~g~w~eA~eiAE~~DR-----iHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL 895 (1416)
T KOG3617|consen 828 RY-------DLLNKLYQSQGMWSEAFEIAETKDR-----IHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRML 895 (1416)
T ss_pred HH-------HHHHHHHHhcccHHHHHHHHhhccc-----eehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHH
Confidence 43 2344667788999988887653221 223568999999999999999999999873 3
Q ss_pred hcCCCc--------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------------CChhHHHHHHH
Q psy17788 249 NNLPPA--------VHVTLITRFALAENKFGDASRAQALLEHTLTSYP---------------------ARVDVWGVYVD 299 (365)
Q Consensus 249 ~~~p~~--------~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P---------------------~~~~~w~~~~~ 299 (365)
...|.. ....+|.-+|+.....|+.+.|..+|..+-..+. .+..+..-++.
T Consensus 896 ~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR 975 (1416)
T KOG3617|consen 896 KEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLAR 975 (1416)
T ss_pred HhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHH
Confidence 333331 1235777889999999999999999987755332 44556777899
Q ss_pred HHHhcCChHHHHHHHHHHHhCC-----CCCCCc-HHHHH------------HHHHHHHhcCCHHHHHHHHHHH
Q psy17788 300 MLVKSDRVDLGRQVIQRAVTQK-----LPPKKL-KPLYM------------KWLKLEEQYGDAEAVENVKKEI 354 (365)
Q Consensus 300 ~~~~~g~~~~Ar~~~eral~~~-----l~~~~~-~~~~~------------~~l~~e~~~G~~~~a~~v~~kA 354 (365)
+|...|++.+|..+|.||-... ++.+.+ ..+|+ ....||..-|....|..+|.||
T Consensus 976 ~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkA 1048 (1416)
T KOG3617|consen 976 MYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKA 1048 (1416)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhh
Confidence 9999999999999999886520 011111 11232 2233555555777777777665
No 193
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.02 E-value=0.0025 Score=53.51 Aligned_cols=124 Identities=17% Similarity=0.191 Sum_probs=102.2
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChhHHHHH
Q psy17788 220 SVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPA--RVDVWGVY 297 (365)
Q Consensus 220 ~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~--~~~~w~~~ 297 (365)
...-.+.++..+...|++.+|+..|+.++.-.=- .+..++..+++..+..+++..|...++++.+.+|. .++....|
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA-~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFA-HDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccC-CCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 4456788899999999999999999999864322 24567788899999999999999999999999986 48899999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHH
Q psy17788 298 VDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVE 348 (365)
Q Consensus 298 ~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~ 348 (365)
+..+...|.+..|+..|+-++. ..|. ..--..|..|..++|....+.
T Consensus 167 aR~laa~g~~a~Aesafe~a~~-~ypg---~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAIS-YYPG---PQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHH-hCCC---HHHHHHHHHHHHHhcchhHHH
Confidence 9999999999999999999998 3333 344566788888888555443
No 194
>KOG1941|consensus
Probab=98.00 E-value=0.0013 Score=60.53 Aligned_cols=248 Identities=13% Similarity=0.094 Sum_probs=156.8
Q ss_pred Hhc-CCCCCChHHHHHHhhcCCCCHHHHHHHH---HHHHcccCHHHHHHHHHHHHhhcc-CccccchHHHHHHHHHHHHH
Q psy17788 89 LLQ-NGEPVSPDGFDRMLLGQPNNSELWVKYM---AYHLQATEIEKARSIARRALTVIN-IRNEEDRLNVWTSLLNLEHL 163 (365)
Q Consensus 89 l~~-~~~p~a~~~fe~~l~~~p~~~~~w~~~~---~~~~~~~~~e~A~~~~~raL~~~p-~~~~~~~~~~w~~~~~l~~~ 163 (365)
|.. ++..+++....+.|..-.+...=+..|+ ..+...|.++.+. .+++..+. +++-++..-...++++++..
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL---~~a~sqi~~a~~~~ds~~~~ea~lnlar~ 92 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEML---KFAVSQIDTARELEDSDFLLEAYLNLARS 92 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 4444666666666654444333333333 2334444444433 33333221 22222445566777777654
Q ss_pred hC---CHHHHHHHHHHHHHcCC------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCC---CCcHHHHHHHHHHH
Q psy17788 164 YG---TKESLQECLHEAVRCND------ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQT---HSSVNIYLQCATLL 231 (365)
Q Consensus 164 ~g---~~~~a~~v~~ral~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~a~~~ 231 (365)
+. ++.+++.+-.-.+.... ...++..++....-.+.++++.+.|+.+++....+ --..++...++.++
T Consensus 93 ~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf 172 (518)
T KOG1941|consen 93 NEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLF 172 (518)
T ss_pred HHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHH
Confidence 43 34444544444443321 33466778888888899999999999999865211 12357899999999
Q ss_pred HHcCChHHHHHHHHHHHhcCCC----c----chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCC---hhHHHHH
Q psy17788 232 LRLGQKDTARHILQRGLNNLPP----A----VHVTLITRFALAENKFGDASRAQALLEHTLTS---YPAR---VDVWGVY 297 (365)
Q Consensus 232 ~~~g~~~~A~~~l~ral~~~p~----~----~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~---~P~~---~~~w~~~ 297 (365)
....++++|..+..+|...... + .+.-.++.++..+...|..-.|....+.+.+. ..++ ......+
T Consensus 173 ~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~ 252 (518)
T KOG1941|consen 173 AQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCF 252 (518)
T ss_pred HHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 9999999999999988876321 1 12345667777888899999999998888764 3333 4457789
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHH
Q psy17788 298 VDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAE 345 (365)
Q Consensus 298 ~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~ 345 (365)
+|+|...|+.+.|..-|+.|.. .|..+=.+.++++...|-..
T Consensus 253 aDIyR~~gd~e~af~rYe~Am~------~m~~~gdrmgqv~al~g~Ak 294 (518)
T KOG1941|consen 253 ADIYRSRGDLERAFRRYEQAMG------TMASLGDRMGQVEALDGAAK 294 (518)
T ss_pred HHHHHhcccHhHHHHHHHHHHH------HHhhhhhhHHHHHHHHHHHH
Confidence 9999999999999999999875 24444455555555554433
No 195
>KOG1941|consensus
Probab=97.99 E-value=0.00065 Score=62.38 Aligned_cols=239 Identities=13% Similarity=0.078 Sum_probs=160.7
Q ss_pred HHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHH---HHHHHHhCCHHHHH----HHHHHHHHcCCC---HHHHHHH
Q psy17788 121 YHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSL---LNLEHLYGTKESLQ----ECLHEAVRCNDE---TKVYMNM 190 (365)
Q Consensus 121 ~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~---~~l~~~~g~~~~a~----~v~~ral~~~~~---~~~~~~l 190 (365)
-+.+..+.++|..++.+.|.... +...-+..| .......|.++++. ....-+...+++ ...+..+
T Consensus 15 ~Ly~s~~~~~al~~w~~~L~~l~-----~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnl 89 (518)
T KOG1941|consen 15 QLYQSNQTEKALQVWTKVLEKLS-----DLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNL 89 (518)
T ss_pred hHhcCchHHHHHHHHHHHHHHHH-----HHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777776544 222222222 22334444444432 233333333433 3466777
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHhcCCC--CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--cc--hHHHHHHHH
Q psy17788 191 MEIYAASAQIRDLESTVKLLLKKAGQTH--SSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPP--AV--HVTLITRFA 264 (365)
Q Consensus 191 ~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~--~~--~~~~~~~~a 264 (365)
+..+.+.-++.+++.+-+.-+...|..+ .--++...++..+...+.+++++..|+.|+..-.. ++ ...++..++
T Consensus 90 ar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lg 169 (518)
T KOG1941|consen 90 ARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLG 169 (518)
T ss_pred HHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHH
Confidence 8888888888888888777776654332 22367778899999999999999999999986322 11 256888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC----Ch------hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCC---cHHHH
Q psy17788 265 LAENKFGDASRAQALLEHTLTSYPA----RV------DVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKK---LKPLY 331 (365)
Q Consensus 265 ~~~~~~g~~e~A~~~fe~~l~~~P~----~~------~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~---~~~~~ 331 (365)
.++....|+++|..+.-++...-.. +. -+..-++..+...|..-.|.++-+.+.++.+...+ ...-.
T Consensus 170 slf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~ 249 (518)
T KOG1941|consen 170 SLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCL 249 (518)
T ss_pred HHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 9999999999999998888765332 21 22334456677889998899988888875443332 22345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhcc
Q psy17788 332 MKWLKLEEQYGDAEAVENVKKEIEQYVRNSKNK 364 (365)
Q Consensus 332 ~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~~~~ 364 (365)
..+.++++..||.+.+-.-|+.|+-...+.+|+
T Consensus 250 ~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdr 282 (518)
T KOG1941|consen 250 LCFADIYRSRGDLERAFRRYEQAMGTMASLGDR 282 (518)
T ss_pred HHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhh
Confidence 678899999999999999999999887776654
No 196
>KOG4340|consensus
Probab=97.99 E-value=0.00023 Score=63.71 Aligned_cols=208 Identities=11% Similarity=0.005 Sum_probs=143.2
Q ss_pred CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788 92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ 171 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~ 171 (365)
.+...+|.+..--...+|.+-....-++.+|....++..|..+|++.-...| .....-+-+++-....+.+..|.
T Consensus 24 ~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P-----~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 24 ARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHP-----ELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred hhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCh-----HHHHHHHHHHHHHHHhcccHHHH
Confidence 3444577777777788899888888899999999999999999999988888 33333344444444556677777
Q ss_pred HHHHHHHHcCCCHHHHHH---H-HHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy17788 172 ECLHEAVRCNDETKVYMN---M-MEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRG 247 (365)
Q Consensus 172 ~v~~ral~~~~~~~~~~~---l-~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ra 247 (365)
.|...... ....+.. + +.+....+++..++.+.++... .+...+.++.|-++++.|+++.|.+-|+.|
T Consensus 99 rV~~~~~D---~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~-----en~Ad~~in~gCllykegqyEaAvqkFqaA 170 (459)
T KOG4340|consen 99 RVAFLLLD---NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS-----ENEADGQINLGCLLYKEGQYEAAVQKFQAA 170 (459)
T ss_pred HHHHHhcC---CHHHHHHHHHHHHHHhcccccCcchHHHHHhccC-----CCccchhccchheeeccccHHHHHHHHHHH
Confidence 77655432 2222222 2 4555677888888887766532 356788888888899999999999999999
Q ss_pred HhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHH----HHHHHhCCCC-------------------------hhHHHHHH
Q psy17788 248 LNNLPPAVHVTLITRFALAENKFGDASRAQALL----EHTLTSYPAR-------------------------VDVWGVYV 298 (365)
Q Consensus 248 l~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~f----e~~l~~~P~~-------------------------~~~w~~~~ 298 (365)
++...-.+. +-+..+.++++.|+++.|..+. ++.++.+|.- +.+++.-+
T Consensus 171 lqvsGyqpl--lAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKa 248 (459)
T KOG4340|consen 171 LQVSGYQPL--LAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKA 248 (459)
T ss_pred HhhcCCCch--hHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhh
Confidence 887655433 4467788888999988887654 5555566621 12233344
Q ss_pred HHHHhcCChHHHHHHH
Q psy17788 299 DMLVKSDRVDLGRQVI 314 (365)
Q Consensus 299 ~~~~~~g~~~~Ar~~~ 314 (365)
.++...|+.+.|++.+
T Consensus 249 AIeyq~~n~eAA~eaL 264 (459)
T KOG4340|consen 249 AIEYQLRNYEAAQEAL 264 (459)
T ss_pred hhhhhcccHHHHHHHh
Confidence 5566677777776644
No 197
>KOG4340|consensus
Probab=97.99 E-value=0.00049 Score=61.67 Aligned_cols=185 Identities=12% Similarity=0.015 Sum_probs=138.6
Q ss_pred HcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHHhCCHH
Q psy17788 123 LQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVY-MNMMEIYAASAQIR 201 (365)
Q Consensus 123 ~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~-~~l~~~~~~~g~~~ 201 (365)
++..+++.|+.+..--....| .+.-....++.++....++..|-..|++..+..|...-| +..++-+.+.+.+.
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p-----~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~A 95 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSP-----RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYA 95 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccH
Confidence 556677888887776666566 233445556667777778999999999999988887766 44488888899999
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy17788 202 DLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLE 281 (365)
Q Consensus 202 ~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe 281 (365)
.|..+...+.... .-...+...-+.+.+..+++..++.+.++ .|......++...|.+.++.|+++.|..-|+
T Consensus 96 DALrV~~~~~D~~---~L~~~~lqLqaAIkYse~Dl~g~rsLveQ----lp~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 96 DALRVAFLLLDNP---ALHSRVLQLQAAIKYSEGDLPGSRSLVEQ----LPSENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred HHHHHHHHhcCCH---HHHHHHHHHHHHHhcccccCcchHHHHHh----ccCCCccchhccchheeeccccHHHHHHHHH
Confidence 9988887765421 11223344445566777888888887765 5654456677888999999999999999999
Q ss_pred HHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788 282 HTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVT 319 (365)
Q Consensus 282 ~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~ 319 (365)
.+++.-.-++-+-...+-+....|+++.|.++...++.
T Consensus 169 aAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIie 206 (459)
T KOG4340|consen 169 AALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIE 206 (459)
T ss_pred HHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 99998887777777788888888999999877666655
No 198
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=97.93 E-value=1.2e-05 Score=72.06 Aligned_cols=94 Identities=15% Similarity=0.156 Sum_probs=79.7
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHH-HHHcCCHHHHHHHHHH
Q psy17788 204 ESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALA-ENKFGDASRAQALLEH 282 (365)
Q Consensus 204 ~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~-~~~~g~~e~A~~~fe~ 282 (365)
.-.|.++..+| ++++++|..|+.+..+.|.+.+...+|..+++.+|.+.. +|...+.+ ++.+++++.+|.+|.+
T Consensus 93 ~f~~~R~tnkf---f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvd--lWI~~c~~e~~~~ani~s~Ra~f~~ 167 (435)
T COG5191 93 IFELYRSTNKF---FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVD--LWIYCCAFELFEIANIESSRAMFLK 167 (435)
T ss_pred eEeeehhhhcC---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCce--eeeeeccchhhhhccHHHHHHHHHh
Confidence 34556666778 999999999999999999999999999999999999744 55543444 4468999999999999
Q ss_pred HHHhCCCChhHHHHHHHHHH
Q psy17788 283 TLTSYPARVDVWGVYVDMLV 302 (365)
Q Consensus 283 ~l~~~P~~~~~w~~~~~~~~ 302 (365)
+|..+|.++.+|..|..++.
T Consensus 168 glR~N~~~p~iw~eyfr~El 187 (435)
T COG5191 168 GLRMNSRSPRIWIEYFRMEL 187 (435)
T ss_pred hhccCCCCchHHHHHHHHHH
Confidence 99999999999999988764
No 199
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.93 E-value=2.8e-05 Score=49.76 Aligned_cols=41 Identities=22% Similarity=0.374 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHH
Q psy17788 259 LITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVD 299 (365)
Q Consensus 259 ~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~ 299 (365)
++..+|..+...|++++|+.+|+++++.+|+++.+|..++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 45667888888888888888888888888888888887764
No 200
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.93 E-value=0.00033 Score=56.46 Aligned_cols=71 Identities=11% Similarity=-0.031 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC
Q psy17788 111 NSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE 183 (365)
Q Consensus 111 ~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~ 183 (365)
+...+..-+.-.++.|+++.|+..|+......|+.+-.....+|++++ +...|+++.|...++|.++.+|.
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~ya--yy~~~~y~~A~a~~~rFirLhP~ 79 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYA--YYKQGDYEEAIAAYDRFIRLHPT 79 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHH--HHHccCHHHHHHHHHHHHHhCCC
Confidence 445667777777888888888888888888888876665555555444 44567888888888888888874
No 201
>KOG4234|consensus
Probab=97.92 E-value=0.00066 Score=57.47 Aligned_cols=64 Identities=8% Similarity=-0.026 Sum_probs=34.2
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc
Q psy17788 188 MNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPA 254 (365)
Q Consensus 188 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~ 254 (365)
..-+.++.+.++++.|++-..+++... |.+.++....|.+|.+...+++|+.=|.+.+.++|..
T Consensus 138 ~Nraaa~iKl~k~e~aI~dcsKaiel~---pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 138 SNRAAALIKLRKWESAIEDCSKAIELN---PTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred hhhHHHHHHhhhHHHHHHHHHhhHhcC---chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcch
Confidence 333444455555555555555555554 5555555555555555555555555555555555553
No 202
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.90 E-value=0.00023 Score=63.26 Aligned_cols=94 Identities=17% Similarity=0.185 Sum_probs=80.2
Q ss_pred HhCCHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChH
Q psy17788 163 LYGTKESLQECLHEAVRCNDE----TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKD 238 (365)
Q Consensus 163 ~~g~~~~a~~v~~ral~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~ 238 (365)
..|++..|...|...++.+|+ ..+++=|+..+...|+++.|..+|..+++.++.+|..++.++.+|....+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 456788999999999988884 3467778899999999999999999999998777777888999999999999999
Q ss_pred HHHHHHHHHHhcCCCcch
Q psy17788 239 TARHILQRGLNNLPPAVH 256 (365)
Q Consensus 239 ~A~~~l~ral~~~p~~~~ 256 (365)
+|+..|+..++..|+...
T Consensus 233 ~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 233 EACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHHHHHHHHCCCCHH
Confidence 999999999999888643
No 203
>KOG2053|consensus
Probab=97.89 E-value=0.0089 Score=60.93 Aligned_cols=223 Identities=11% Similarity=0.054 Sum_probs=145.4
Q ss_pred HcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCHH
Q psy17788 123 LQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND-ETKVYMNMMEIYAASAQIR 201 (365)
Q Consensus 123 ~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g~~~ 201 (365)
+..+++.+|.....+.++.+|.. ....+.-++ ...+.|..+.|..+++..-...+ +......+-.+|.+.|+.+
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~---~~a~vLkaL--sl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNA---LYAKVLKAL--SLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCc---HHHHHHHHH--HHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhh
Confidence 56778999999999999999943 222333333 34577888888866665433333 3446667788899999999
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCC---------
Q psy17788 202 DLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGD--------- 272 (365)
Q Consensus 202 ~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~--------- 272 (365)
+|..+|+++++.+ |. ....+.+-..|.+.+.+.+-.+.=-+.-+..|+.++ .+|.-+..+..-...
T Consensus 95 ~~~~~Ye~~~~~~---P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~y-yfWsV~Slilqs~~~~~~~~~~i~ 169 (932)
T KOG2053|consen 95 EAVHLYERANQKY---PS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAY-YFWSVISLILQSIFSENELLDPIL 169 (932)
T ss_pred HHHHHHHHHHhhC---Cc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc-hHHHHHHHHHHhccCCcccccchh
Confidence 9999999999998 77 888888888888888775543333333346777654 233322222221111
Q ss_pred HHHHHHHHHHHHHhC-CC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q psy17788 273 ASRAQALLEHTLTSY-PA-RVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENV 350 (365)
Q Consensus 273 ~e~A~~~fe~~l~~~-P~-~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v 350 (365)
.--|...+++.+..- +- ...=...|..++...|.+++|..++..-+...++ ..+..+-.+-+++.+..+.+.+.-++
T Consensus 170 l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~-~~~~~l~~~~~dllk~l~~w~~l~~l 248 (932)
T KOG2053|consen 170 LALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLT-SANLYLENKKLDLLKLLNRWQELFEL 248 (932)
T ss_pred HHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHhcChHHHHHH
Confidence 124566666666554 21 1223566777788888899998888666654444 33555656667777777777776666
Q ss_pred HHHHHH
Q psy17788 351 KKEIEQ 356 (365)
Q Consensus 351 ~~kA~~ 356 (365)
..++++
T Consensus 249 ~~~Ll~ 254 (932)
T KOG2053|consen 249 SSRLLE 254 (932)
T ss_pred HHHHHH
Confidence 655543
No 204
>KOG3081|consensus
Probab=97.88 E-value=0.0027 Score=56.16 Aligned_cols=109 Identities=12% Similarity=0.152 Sum_probs=54.3
Q ss_pred HHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcC
Q psy17788 160 LEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAA----SAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLG 235 (365)
Q Consensus 160 l~~~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g 235 (365)
+..+....+-|.+.++++.+... ..+..+|+..+.+ .++.+.|.-+|+.+-.++ +..+.+....+.+++..|
T Consensus 146 I~lk~~r~d~A~~~lk~mq~ide-d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~---~~T~~llnG~Av~~l~~~ 221 (299)
T KOG3081|consen 146 ILLKMHRFDLAEKELKKMQQIDE-DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT---PPTPLLLNGQAVCHLQLG 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHccch-HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc---CCChHHHccHHHHHHHhc
Confidence 33344445555555555554432 2223333333322 234555555566655555 555555555555566666
Q ss_pred ChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHH
Q psy17788 236 QKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDAS 274 (365)
Q Consensus 236 ~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e 274 (365)
++++|..+++.+|...+++ ..++..+..+-...|...
T Consensus 222 ~~eeAe~lL~eaL~kd~~d--petL~Nliv~a~~~Gkd~ 258 (299)
T KOG3081|consen 222 RYEEAESLLEEALDKDAKD--PETLANLIVLALHLGKDA 258 (299)
T ss_pred CHHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHhCCCh
Confidence 6666666666665555553 334444444444444443
No 205
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.87 E-value=0.00089 Score=57.43 Aligned_cols=92 Identities=11% Similarity=0.044 Sum_probs=47.3
Q ss_pred HHhCCHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHH
Q psy17788 162 HLYGTKESLQECLHEAVRCNDET-KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTA 240 (365)
Q Consensus 162 ~~~g~~~~a~~v~~ral~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A 240 (365)
-+.|-..-|+--|.+++.++|.. .++..++-.+...|+++.|.+.|+..++.. |....+..+.|..++--|++.-|
T Consensus 76 DSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD---p~y~Ya~lNRgi~~YY~gR~~LA 152 (297)
T COG4785 76 DSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD---PTYNYAHLNRGIALYYGGRYKLA 152 (297)
T ss_pred hhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC---CcchHHHhccceeeeecCchHhh
Confidence 33333444455555555555543 344444555555555555555555555555 55555555555555555555555
Q ss_pred HHHHHHHHhcCCCcch
Q psy17788 241 RHILQRGLNNLPPAVH 256 (365)
Q Consensus 241 ~~~l~ral~~~p~~~~ 256 (365)
..-+..--+.+|+++.
T Consensus 153 q~d~~~fYQ~D~~DPf 168 (297)
T COG4785 153 QDDLLAFYQDDPNDPF 168 (297)
T ss_pred HHHHHHHHhcCCCChH
Confidence 5544444445555443
No 206
>KOG4648|consensus
Probab=97.86 E-value=6.1e-05 Score=68.48 Aligned_cols=105 Identities=11% Similarity=0.036 Sum_probs=64.6
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHc
Q psy17788 191 MEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKF 270 (365)
Q Consensus 191 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~ 270 (365)
++-|.++|++++|+.+|.+++..+ |.|+..+.+.+..|++.+.+..|..-...|+..+.. .+..|++-+..-+.+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~---P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~--Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY---PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL--YVKAYSRRMQARESL 178 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC---CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH--HHHHHHHHHHHHHHH
Confidence 445556666666666666666665 666666666666666666666666555555554433 355566666666666
Q ss_pred CCHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q psy17788 271 GDASRAQALLEHTLTSYPARVDVWGVYVDM 300 (365)
Q Consensus 271 g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~ 300 (365)
|...+|..-++.+|...|++.++--.|+++
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNIELKKSLARI 208 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence 666666666666666666665555555443
No 207
>KOG3081|consensus
Probab=97.86 E-value=0.018 Score=51.12 Aligned_cols=149 Identities=14% Similarity=0.093 Sum_probs=113.4
Q ss_pred HHHHHH-HHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q psy17788 153 VWTSLL-NLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLL 231 (365)
Q Consensus 153 ~w~~~~-~l~~~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~ 231 (365)
+|.-++ .++..-|+++.|.+...+. .+..+...-..++.+..+++-|.+.+++|.... +..+...+|..+
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~~----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id-----ed~tLtQLA~aw 179 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHLG----ENLEAAALNVQILLKMHRFDLAEKELKKMQQID-----EDATLTQLAQAW 179 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhcc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-----hHHHHHHHHHHH
Confidence 554443 3566677899998887773 244555555677888899999999999998753 555566666666
Q ss_pred HH----cCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCh
Q psy17788 232 LR----LGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRV 307 (365)
Q Consensus 232 ~~----~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~ 307 (365)
.+ .+++..|.-+|+..-+..|.. ..++...+.++...|++++|..+++.+|..+|++++...+++.+-...|..
T Consensus 180 v~la~ggek~qdAfyifeE~s~k~~~T--~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 180 VKLATGGEKIQDAFYIFEELSEKTPPT--PLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKD 257 (299)
T ss_pred HHHhccchhhhhHHHHHHHHhcccCCC--hHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCC
Confidence 55 346889999999987744432 456777889999999999999999999999999999999999888888876
Q ss_pred HHHHH
Q psy17788 308 DLGRQ 312 (365)
Q Consensus 308 ~~Ar~ 312 (365)
..+..
T Consensus 258 ~~~~~ 262 (299)
T KOG3081|consen 258 AEVTE 262 (299)
T ss_pred hHHHH
Confidence 55543
No 208
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.85 E-value=0.025 Score=52.79 Aligned_cols=264 Identities=15% Similarity=0.079 Sum_probs=168.1
Q ss_pred HHHHHHHHHHHHHhc---CCCCCChHHHHHHhhc--CCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchH
Q psy17788 77 AEEARIRQAEDELLQ---NGEPVSPDGFDRMLLG--QPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRL 151 (365)
Q Consensus 77 ~~e~~~~~~e~~l~~---~~~p~a~~~fe~~l~~--~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~ 151 (365)
++.+-++.+-+.++. ++...+...-.+.-.. .-.-+-+.+.-+..-+-.|+++.|+.-|+-.+. +| +--
T Consensus 80 KRdrgyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dP-----EtR 153 (531)
T COG3898 80 KRDRGYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DP-----ETR 153 (531)
T ss_pred HhhhHHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-Ch-----HHH
Confidence 334455555565655 3344555555554322 222334444445555788999999999998887 77 333
Q ss_pred HHHHHHHHHH-HHhCCHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCc-----HHHH
Q psy17788 152 NVWTSLLNLE-HLYGTKESLQECLHEAVRCNDETK-VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSS-----VNIY 224 (365)
Q Consensus 152 ~~w~~~~~l~-~~~g~~~~a~~v~~ral~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----~~~~ 224 (365)
.+-+.-+.++ .+.|..+.|+..-+++-...|... .+.......+..|+++.|+++.+.........+.- ..+.
T Consensus 154 llGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLL 233 (531)
T COG3898 154 LLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLL 233 (531)
T ss_pred HHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHH
Confidence 3333333333 467899999999999988887654 66677777888999999999998776543111111 1112
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc
Q psy17788 225 LQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKS 304 (365)
Q Consensus 225 ~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~ 304 (365)
..-+. ..-.-+...|+..-..+++..|..... -+--+..+++.|+..++-.++|.+.+..|+ +++|..|.+. +.
T Consensus 234 tAkA~-s~ldadp~~Ar~~A~~a~KL~pdlvPa--av~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia~lY~~a--r~ 307 (531)
T COG3898 234 TAKAM-SLLDADPASARDDALEANKLAPDLVPA--AVVAARALFRDGNLRKGSKILETAWKAEPH-PDIALLYVRA--RS 307 (531)
T ss_pred HHHHH-HHhcCChHHHHHHHHHHhhcCCccchH--HHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHHHHHHHh--cC
Confidence 22221 222346778888888888888886443 344488999999999999999999999998 8999998865 44
Q ss_pred CChHHHHHHHHHHHhC-CCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy17788 305 DRVDLGRQVIQRAVTQ-KLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIE 355 (365)
Q Consensus 305 g~~~~Ar~~~eral~~-~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~ 355 (365)
|+.-..| ++|+-.+ .+.+++....+.. ...-..-|++..++.--+.+.
T Consensus 308 gdta~dR--lkRa~~L~slk~nnaes~~~v-a~aAlda~e~~~ARa~Aeaa~ 356 (531)
T COG3898 308 GDTALDR--LKRAKKLESLKPNNAESSLAV-AEAALDAGEFSAARAKAEAAA 356 (531)
T ss_pred CCcHHHH--HHHHHHHHhcCccchHHHHHH-HHHHHhccchHHHHHHHHHHh
Confidence 5543333 3333221 4555544444443 444445688877766555444
No 209
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.85 E-value=5.1e-05 Score=54.97 Aligned_cols=65 Identities=20% Similarity=0.271 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCc-c-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17788 221 VNIYLQCATLLLRLGQKDTARHILQRGLNN---LPPA-V-HVTLITRFALAENKFGDASRAQALLEHTLT 285 (365)
Q Consensus 221 ~~~~~~~a~~~~~~g~~~~A~~~l~ral~~---~p~~-~-~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~ 285 (365)
..++..+|.++...|++++|+.+|++++.. .+.. + .+.++..+|.++...|++++|..+|+++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555555555555555555555555543 1211 1 134555555555555555555555555554
No 210
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.83 E-value=0.00021 Score=68.01 Aligned_cols=64 Identities=13% Similarity=0.091 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHH---HHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy17788 184 TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNI---YLQCATLLLRLGQKDTARHILQRGLNN 250 (365)
Q Consensus 184 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---~~~~a~~~~~~g~~~~A~~~l~ral~~ 250 (365)
...|+.++..|...|++++|+..|++++... |.+..+ |+++|.+|..+|++++|+..|++|+..
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~---Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELN---PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3455666666666666666666666666655 555532 666666666666666666666666554
No 211
>KOG4234|consensus
Probab=97.83 E-value=0.00081 Score=56.95 Aligned_cols=99 Identities=18% Similarity=0.143 Sum_probs=67.9
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHhcCCCCc--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Q psy17788 191 MEIYAASAQIRDLESTVKLLLKKAGQTHSS--VNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAEN 268 (365)
Q Consensus 191 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~ 268 (365)
++-+...|.+++|.+-|..++...+..+.. .-++.+.|.++++++..+.|+.-..++|++.|.. ...+.+-|.+|.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty--~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY--EKALERRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh--HHHHHHHHHHHH
Confidence 666677788888888888888776211111 2245566667777777777777777777777774 445566677777
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCh
Q psy17788 269 KFGDASRAQALLEHTLTSYPARV 291 (365)
Q Consensus 269 ~~g~~e~A~~~fe~~l~~~P~~~ 291 (365)
+...++.|..-|.+++..+|.+-
T Consensus 180 k~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcchH
Confidence 77777777777777777777653
No 212
>KOG4555|consensus
Probab=97.81 E-value=0.00044 Score=54.44 Aligned_cols=88 Identities=18% Similarity=0.087 Sum_probs=44.1
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh----hHHHHHHHHHHhcC
Q psy17788 230 LLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARV----DVWGVYVDMLVKSD 305 (365)
Q Consensus 230 ~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~----~~w~~~~~~~~~~g 305 (365)
.+...|+.+.|+..|.++|...|.. ..+|..-++.+.-.|+.++|..-++++++.-...+ ..+...+.+|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~r--aSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPER--ASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccc--hHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 3344455555555555555555553 23444445555555555555555555555433321 23344444555555
Q ss_pred ChHHHHHHHHHHHh
Q psy17788 306 RVDLGRQVIQRAVT 319 (365)
Q Consensus 306 ~~~~Ar~~~eral~ 319 (365)
+-+.||.-|++|-.
T Consensus 130 ~dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 130 NDDAARADFEAAAQ 143 (175)
T ss_pred chHHHHHhHHHHHH
Confidence 55555555555543
No 213
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.80 E-value=4.4e-05 Score=48.82 Aligned_cols=42 Identities=21% Similarity=0.383 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHH
Q psy17788 113 ELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLN 159 (365)
Q Consensus 113 ~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~ 159 (365)
.+|..++..+...|++++|+.+|+++++..| ++..+|..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P-----~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDP-----DDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-----CCHHHHHHhhh
Confidence 5789999999999999999999999999999 77889988764
No 214
>KOG2796|consensus
Probab=97.78 E-value=0.0029 Score=55.92 Aligned_cols=133 Identities=12% Similarity=0.087 Sum_probs=76.9
Q ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-------CHHH
Q psy17788 114 LWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND-------ETKV 186 (365)
Q Consensus 114 ~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~-------~~~~ 186 (365)
+-+.|+.+++..+++.-....+...++..|. ....+-.+++.+..+.|+.+.|...|++.-+.+. ...+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e----~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V 254 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPE----QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMV 254 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCc----ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHH
Confidence 3345556666666666666666666665542 3345556666666666666666666664322211 2234
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q psy17788 187 YMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPP 253 (365)
Q Consensus 187 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~ 253 (365)
+...+.+|.-++++.+|-..|.+.+... +.++....+.|.+++-.|+...|.+.++.++...|.
T Consensus 255 ~~n~a~i~lg~nn~a~a~r~~~~i~~~D---~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 255 LMNSAFLHLGQNNFAEAHRFFTEILRMD---PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred HhhhhhheecccchHHHHHHHhhccccC---CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 4555555555666666666666666555 556666666666666666666666666666666655
No 215
>KOG1130|consensus
Probab=97.78 E-value=0.0024 Score=59.67 Aligned_cols=268 Identities=14% Similarity=0.087 Sum_probs=173.5
Q ss_pred HHHhc-CCCCCChHHHHHHhhcCCCC----HHHHHHHHHHHHcccCHHHHHHHHHHHHh---hccCccccchHHHHHHHH
Q psy17788 87 DELLQ-NGEPVSPDGFDRMLLGQPNN----SELWVKYMAYHLQATEIEKARSIARRALT---VINIRNEEDRLNVWTSLL 158 (365)
Q Consensus 87 ~~l~~-~~~p~a~~~fe~~l~~~p~~----~~~w~~~~~~~~~~~~~e~A~~~~~raL~---~~p~~~~~~~~~~w~~~~ 158 (365)
++|-. ++--..++.|+.+|...-.+ +.+|.+++..|.-.+++++|..+...=|. ++..+. .-...--.+.
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdkl--GEAKssgNLG 102 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKL--GEAKSSGNLG 102 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchh--cccccccccc
Confidence 44445 55556789999999987665 36778888888888888888876543222 111110 0011122355
Q ss_pred HHHHHhCCHHHHHHHHHHHHHcCC-------CHHHHHHHHHHHHHhCC-------------HHHHHHHHHHHHHHhcCCC
Q psy17788 159 NLEHLYGTKESLQECLHEAVRCND-------ETKVYMNMMEIYAASAQ-------------IRDLESTVKLLLKKAGQTH 218 (365)
Q Consensus 159 ~l~~~~g~~~~a~~v~~ral~~~~-------~~~~~~~l~~~~~~~g~-------------~~~A~~~~~~al~~~~~~~ 218 (365)
+.....|.++.|..+..|-+.+.. ...+++.++++|...|+ .+++.+.++.+++.| -
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy---~ 179 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFY---M 179 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHH---H
Confidence 666778899999988888765432 34578889999886553 357778888888877 5
Q ss_pred CcHHHHHHHH-------------HHHHHcCChHHHHHHHHHHHhcC---CC-cchHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy17788 219 SSVNIYLQCA-------------TLLLRLGQKDTARHILQRGLNNL---PP-AVHVTLITRFALAENKFGDASRAQALLE 281 (365)
Q Consensus 219 ~~~~~~~~~a-------------~~~~~~g~~~~A~~~l~ral~~~---p~-~~~~~~~~~~a~~~~~~g~~e~A~~~fe 281 (365)
.+.++...++ ..|+-.|+++.|+...+.-|.+- .. ...-+....+|+++.-.|+++.|...|.
T Consensus 180 eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK 259 (639)
T KOG1130|consen 180 ENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYK 259 (639)
T ss_pred HHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHH
Confidence 5555544443 34555689999987766544432 11 1123467788999999999999999998
Q ss_pred HHHHh----CCCChhHH--HHHHHHHHhcCChHHHHHHHHHHHhC--CCC--CCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q psy17788 282 HTLTS----YPARVDVW--GVYVDMLVKSDRVDLGRQVIQRAVTQ--KLP--PKKLKPLYMKWLKLEEQYGDAEAVENVK 351 (365)
Q Consensus 282 ~~l~~----~P~~~~~w--~~~~~~~~~~g~~~~Ar~~~eral~~--~l~--~~~~~~~~~~~l~~e~~~G~~~~a~~v~ 351 (365)
..+.. -..-.++- ..++..|.-..++..|+.++.|-+.+ .+. .......|..-..| ...|.-+.|....
T Consensus 260 ~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~-~alg~h~kAl~fa 338 (639)
T KOG1130|consen 260 LTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAF-NALGEHRKALYFA 338 (639)
T ss_pred HHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-HhhhhHHHHHHHH
Confidence 87653 22224444 44567777778899999999998762 111 12233456554444 4567777777777
Q ss_pred HHHHHHHHh
Q psy17788 352 KEIEQYVRN 360 (365)
Q Consensus 352 ~kA~~~v~~ 360 (365)
+++++....
T Consensus 339 e~hl~~s~e 347 (639)
T KOG1130|consen 339 ELHLRSSLE 347 (639)
T ss_pred HHHHHHHHH
Confidence 766665433
No 216
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.76 E-value=0.00032 Score=66.83 Aligned_cols=69 Identities=13% Similarity=0.075 Sum_probs=64.1
Q ss_pred cCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Q psy17788 107 GQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRL---NVWTSLLNLEHLYGTKESLQECLHEAVRC 180 (365)
Q Consensus 107 ~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~---~~w~~~~~l~~~~g~~~~a~~v~~ral~~ 180 (365)
.+|++...|+.++..+...|++++|...|++||...| +.. ..|+.++.++...|+.+.|+..|++|++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~P-----d~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNP-----NPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-----CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5899999999999999999999999999999999888 444 45999999999999999999999999997
No 217
>KOG4555|consensus
Probab=97.76 E-value=0.001 Score=52.49 Aligned_cols=94 Identities=16% Similarity=0.066 Sum_probs=68.9
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc--hHHHHHHHHHHHH
Q psy17788 191 MEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV--HVTLITRFALAEN 268 (365)
Q Consensus 191 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~--~~~~~~~~a~~~~ 268 (365)
+-.....|+.+.|++.|.+++... |..+.+|.+.++.+.-+|+.++|+.=+++|++.-.... .-..+.+-|.++.
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~---P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLA---PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhc---ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 334556788888888888888877 78888888888888888888888888888887643321 2345566677888
Q ss_pred HcCCHHHHHHHHHHHHHhC
Q psy17788 269 KFGDASRAQALLEHTLTSY 287 (365)
Q Consensus 269 ~~g~~e~A~~~fe~~l~~~ 287 (365)
..|+-+.|+.-|+.+-..-
T Consensus 127 l~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HhCchHHHHHhHHHHHHhC
Confidence 8888888888888776543
No 218
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=97.69 E-value=0.00087 Score=53.50 Aligned_cols=110 Identities=15% Similarity=0.265 Sum_probs=74.4
Q ss_pred HHHHHHHHHHhcCC-CcchHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCC---------hhHHHHHHHHHHhc
Q psy17788 239 TARHILQRGLNNLP-PAVHVTLITRFALAENKF----GDASRAQALLEHTLTSYPAR---------VDVWGVYVDMLVKS 304 (365)
Q Consensus 239 ~A~~~l~ral~~~p-~~~~~~~~~~~a~~~~~~----g~~e~A~~~fe~~l~~~P~~---------~~~w~~~~~~~~~~ 304 (365)
..+..|+..|.... .+..+.+|..++.....+ |....-..++++++..+.++ ..+|..|+++..
T Consensus 3 ~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~-- 80 (126)
T PF08311_consen 3 QQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS-- 80 (126)
T ss_dssp HHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS--
T ss_pred HHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc--
Confidence 34455666666555 444566666666665543 33445566777777654432 567888887543
Q ss_pred CChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy17788 305 DRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIE 355 (365)
Q Consensus 305 g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~ 355 (365)
.++.+|..+..... ......||..|..+....|+.+.|..|++++|
T Consensus 81 ----~~~~if~~l~~~~I-G~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 ----DPREIFKFLYSKGI-GTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp ----HHHHHHHHHHHHTT-STTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 78888888887544 45678899999999999999999999998875
No 219
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.67 E-value=0.0055 Score=58.86 Aligned_cols=168 Identities=18% Similarity=0.161 Sum_probs=106.3
Q ss_pred HHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-------------
Q psy17788 116 VKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND------------- 182 (365)
Q Consensus 116 ~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~------------- 182 (365)
...|.-..+..+...-++...+||...| +....|+-++. ....+..++..+|++|++...
T Consensus 172 q~IMq~AWRERnp~aRIkaA~eALei~p-----dCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g 244 (539)
T PF04184_consen 172 QEIMQKAWRERNPQARIKAAKEALEINP-----DCADAYILLAE--EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHG 244 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhh-----hhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHhhchhhhhhccc
Confidence 3445555566666666677777777666 44444443332 223355666666666654321
Q ss_pred -------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy17788 183 -------------ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLN 249 (365)
Q Consensus 183 -------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~ 249 (365)
-.-+-.+++.+..+.|+.++|++.|..+++.++ ..++..+...+...++..+.+.++..++.+-=+
T Consensus 245 ~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p-~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 245 HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP-NLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC-ccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 111235678888899999999999999999872 123567999999999999999999999888422
Q ss_pred c-CCCcchHHHHHHHHHHHHH-cCC---------------HHHHHHHHHHHHHhCCCChhH
Q psy17788 250 N-LPPAVHVTLITRFALAENK-FGD---------------ASRAQALLEHTLTSYPARVDV 293 (365)
Q Consensus 250 ~-~p~~~~~~~~~~~a~~~~~-~g~---------------~e~A~~~fe~~l~~~P~~~~~ 293 (365)
. .|+. ..+.+.-|.+-++ -|+ ...|.+...++++.||.-+..
T Consensus 324 i~lpkS--Ati~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 324 ISLPKS--ATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred ccCCch--HHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 1 3443 2222222333322 122 124678899999999976554
No 220
>KOG2796|consensus
Probab=97.67 E-value=0.011 Score=52.32 Aligned_cols=131 Identities=10% Similarity=0.029 Sum_probs=101.7
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC----CCcchHHHHHHH
Q psy17788 188 MNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNL----PPAVHVTLITRF 263 (365)
Q Consensus 188 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~----p~~~~~~~~~~~ 263 (365)
+.++.++.-.|.+.-....+.+.+++++ +..+.+...++.+-+..|+.+.|..+|++.=+.. .......+....
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~--e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYP--EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCC--cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4455666667788888888999988764 6778888999999999999999998888654321 112234455666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788 264 ALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ 320 (365)
Q Consensus 264 a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~ 320 (365)
+.++.-.+++..|...|.+++..+|.++.+-+.-+-|..-.|+...|.+..+.++.+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 666667788888888999999999998888888888888889999999999999883
No 221
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.64 E-value=0.019 Score=54.08 Aligned_cols=176 Identities=12% Similarity=0.077 Sum_probs=115.5
Q ss_pred CHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHcC--CCHH
Q psy17788 111 NSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHL---YGTKESLQECLHEAVRCN--DETK 185 (365)
Q Consensus 111 ~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~---~g~~~~a~~v~~ral~~~--~~~~ 185 (365)
++++.+.++-.|....+++.-+.+.+.. ...|.........+-..|+-..++ .|+.+.|..++..++... +.+.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l-~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETL-EALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD 218 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHh-hccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence 5577788888888899999888888754 446654445667777778777777 789999999998876553 3556
Q ss_pred HHHHHHHHHHH---------hCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHH----HHHH---HHHH-
Q psy17788 186 VYMNMMEIYAA---------SAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTA----RHIL---QRGL- 248 (365)
Q Consensus 186 ~~~~l~~~~~~---------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A----~~~l---~ral- 248 (365)
++..++.+|-+ ....++|+..|.++... ..+...=++++.++.-.|...+. +.+- ...+
T Consensus 219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~----~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg 294 (374)
T PF13281_consen 219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI----EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLG 294 (374)
T ss_pred HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC----CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHH
Confidence 77777776643 12367788888888766 34555556677777666642222 2211 1111
Q ss_pred --hcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q psy17788 249 --NNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARV 291 (365)
Q Consensus 249 --~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~ 291 (365)
....+....|.+..++.+..-.|+.++|...++++++..|...
T Consensus 295 ~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 295 RKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred hhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 1122333456666667777778888888888888887765543
No 222
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.62 E-value=0.0071 Score=59.52 Aligned_cols=176 Identities=14% Similarity=0.103 Sum_probs=125.2
Q ss_pred HHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHH--------HHHHHHHHHH----HhCCH
Q psy17788 133 SIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETK--------VYMNMMEIYA----ASAQI 200 (365)
Q Consensus 133 ~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~--------~~~~l~~~~~----~~g~~ 200 (365)
.+|.=++..+|+ -...++.+--=.|+-+.+...+.++.+...-.. .|+..+..+. .....
T Consensus 178 G~f~L~lSlLPp--------~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~ 249 (468)
T PF10300_consen 178 GLFNLVLSLLPP--------KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPL 249 (468)
T ss_pred HHHHHHHHhCCH--------HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCH
Confidence 344555555552 133444444445789999999999887543111 1222222121 23467
Q ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc--hHHHHHHHHHHHHHcCCHHHHHH
Q psy17788 201 RDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV--HVTLITRFALAENKFGDASRAQA 278 (365)
Q Consensus 201 ~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~--~~~~~~~~a~~~~~~g~~e~A~~ 278 (365)
+.+.+++..+.+++ |++.-.....|+++...|++++|...|++++.....-+ +.-.+..++-++.-.+++++|..
T Consensus 250 ~~a~~lL~~~~~~y---P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 250 EEAEELLEEMLKRY---PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred HHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 88999999999999 99999999999999999999999999999985432211 23356677888889999999999
Q ss_pred HHHHHHHhCCCChhHH-HHHHHHHHhcCCh-------HHHHHHHHHHHh
Q psy17788 279 LLEHTLTSYPARVDVW-GVYVDMLVKSDRV-------DLGRQVIQRAVT 319 (365)
Q Consensus 279 ~fe~~l~~~P~~~~~w-~~~~~~~~~~g~~-------~~Ar~~~eral~ 319 (365)
.|.++++.+..+..++ ...+-|+...|+. ++|..+|.++-.
T Consensus 327 ~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 327 YFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 9999999777653333 3345678888888 888999988865
No 223
>KOG1130|consensus
Probab=97.61 E-value=0.00034 Score=65.23 Aligned_cols=236 Identities=10% Similarity=0.038 Sum_probs=144.5
Q ss_pred HHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc----CC---CHHHHHHHHH
Q psy17788 120 AYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRC----ND---ETKVYMNMME 192 (365)
Q Consensus 120 ~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~----~~---~~~~~~~l~~ 192 (365)
.-+.+.|+.......|+.||+.-. .......-++..+.+.+...+++++|.+.-.-=|.. .+ ..+.--.+++
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 335788999999999999998433 111122445566666666667777766543222111 11 2233445677
Q ss_pred HHHHhCCHHHHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHHcCC-------------hHHHHHHHHHHHhcCCCc--
Q psy17788 193 IYAASAQIRDLESTVKLLLKKA---GQTHSSVNIYLQCATLLLRLGQ-------------KDTARHILQRGLNNLPPA-- 254 (365)
Q Consensus 193 ~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~~a~~~~~~g~-------------~~~A~~~l~ral~~~p~~-- 254 (365)
.+.-.|.|++|.-+..+-+... |..-....++++++.+|...|+ .+++...|++|++..-.+
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 7888899999988887766542 1112346789999999988763 245566666665532110
Q ss_pred ---------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCh---hHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788 255 ---------VHVTLITRFALAENKFGDASRAQALLEHTLTS---YPARV---DVWGVYVDMLVKSDRVDLGRQVIQRAVT 319 (365)
Q Consensus 255 ---------~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~---~P~~~---~~w~~~~~~~~~~g~~~~Ar~~~eral~ 319 (365)
..-+.+-.+|+.++-+|+++.|+...+.-|.. +.++. .+++.++.+++=.|+++.|.+.|++++.
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 01123344556667789999998887766543 44443 4678889999999999999999999876
Q ss_pred CCCCCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhh
Q psy17788 320 QKLPPK-KLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNS 361 (365)
Q Consensus 320 ~~l~~~-~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~ 361 (365)
+...-. +... .+.....|+.=...+-+++||.|....
T Consensus 264 LAielg~r~vE-----AQscYSLgNtytll~e~~kAI~Yh~rH 301 (639)
T KOG1130|consen 264 LAIELGNRTVE-----AQSCYSLGNTYTLLKEVQKAITYHQRH 301 (639)
T ss_pred HHHHhcchhHH-----HHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 321111 1111 222233455555555566666666543
No 224
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.60 E-value=0.00019 Score=51.96 Aligned_cols=63 Identities=11% Similarity=0.093 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC----ChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788 257 VTLITRFALAENKFGDASRAQALLEHTLTS---YPA----RVDVWGVYVDMLVKSDRVDLGRQVIQRAVT 319 (365)
Q Consensus 257 ~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~---~P~----~~~~w~~~~~~~~~~g~~~~Ar~~~eral~ 319 (365)
..++..+|.++...|++++|...|++++.. .+. -..++..++.++...|++++|..+|++++.
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 457788899999999999999999999864 332 245677888899999999999999999885
No 225
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.59 E-value=0.01 Score=57.02 Aligned_cols=177 Identities=16% Similarity=0.200 Sum_probs=115.4
Q ss_pred hCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHH
Q psy17788 164 YGTKESLQECLHEAVRCND-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARH 242 (365)
Q Consensus 164 ~g~~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 242 (365)
-.+...-++.-.+||+++| +..+|.-++. .......++..+|+++++.. .. .+.........|..-++
T Consensus 181 ERnp~aRIkaA~eALei~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAg---E~----~lg~s~~~~~~g~~~e~-- 249 (539)
T PF04184_consen 181 ERNPQARIKAAKEALEINPDCADAYILLAE--EEASTIVEAEELLRQAVKAG---EA----SLGKSQFLQHHGHFWEA-- 249 (539)
T ss_pred cCCHHHHHHHHHHHHHhhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHH---HH----hhchhhhhhcccchhhh--
Confidence 3466777788888999987 4567766664 34556789999999998863 11 11111111222221111
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788 243 ILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPA--RVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ 320 (365)
Q Consensus 243 ~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~--~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~ 320 (365)
... -+....+.+-..+|.+..+.|+.++|+..|..+++.+|. ...+...++.++...+.+.++..++.+-=..
T Consensus 250 ~~~-----Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 250 WHR-----RDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred hhc-----cccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 111 122223445567899999999999999999999998885 4668889999999999999999999886432
Q ss_pred CCCCCCcHHHHHHHHHHHHhcCCH---------------HHHHHHHHHHHHH
Q psy17788 321 KLPPKKLKPLYMKWLKLEEQYGDA---------------EAVENVKKEIEQY 357 (365)
Q Consensus 321 ~l~~~~~~~~~~~~l~~e~~~G~~---------------~~a~~v~~kA~~~ 357 (365)
.+ |+.....|++-+---+..||. ..|.....||+++
T Consensus 325 ~l-pkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvef 375 (539)
T PF04184_consen 325 SL-PKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEF 375 (539)
T ss_pred cC-CchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHh
Confidence 23 344556677766544545552 2344667777765
No 226
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.59 E-value=6.2e-05 Score=45.19 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=30.7
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHH
Q psy17788 100 GFDRMLLGQPNNSELWVKYMAYHLQATEIEKAR 132 (365)
Q Consensus 100 ~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~ 132 (365)
.|+++|..+|+++.+|..++.++...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 378999999999999999999999999999986
No 227
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.53 E-value=0.011 Score=50.81 Aligned_cols=223 Identities=13% Similarity=0.053 Sum_probs=124.1
Q ss_pred HHHHHHHHHHhc-CCCC--CChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHH
Q psy17788 80 ARIRQAEDELLQ-NGEP--VSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTS 156 (365)
Q Consensus 80 ~~~~~~e~~l~~-~~~p--~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~ 156 (365)
-.|.++..-++. .-.| +|.-.|||.+.. -+.|-..-||.-|.++|...| .-..+..-
T Consensus 45 V~iarlsqlL~~~~l~~eeRA~l~fERGvlY---------------DSlGL~~LAR~DftQaLai~P-----~m~~vfNy 104 (297)
T COG4785 45 VILARMSQILASRALTDEERAQLLFERGVLY---------------DSLGLRALARNDFSQALAIRP-----DMPEVFNY 104 (297)
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHhcchh---------------hhhhHHHHHhhhhhhhhhcCC-----CcHHHHHH
Confidence 344444444444 2222 556666666432 233444567777888888777 44566655
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcH--HHHHHHHHHHHH
Q psy17788 157 LLNLEHLYGTKESLQECLHEAVRCNDETK-VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSV--NIYLQCATLLLR 233 (365)
Q Consensus 157 ~~~l~~~~g~~~~a~~v~~ral~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~a~~~~~ 233 (365)
++-....-|+++.|.+.|...++.+|... ++.+-+-.+.--|++.-|.+-+..-.+.. |++| .+|+.+.. .
T Consensus 105 LG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D---~~DPfR~LWLYl~E---~ 178 (297)
T COG4785 105 LGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDD---PNDPFRSLWLYLNE---Q 178 (297)
T ss_pred HHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcC---CCChHHHHHHHHHH---h
Confidence 55555666788888888888888777543 34433333334577777777666665555 5554 45554432 2
Q ss_pred cCChHHHH-HHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------hhHHHHHHHHHHhcC
Q psy17788 234 LGQKDTAR-HILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPAR-------VDVWGVYVDMLVKSD 305 (365)
Q Consensus 234 ~g~~~~A~-~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~-------~~~w~~~~~~~~~~g 305 (365)
.-++.+|. .+.+|+-..... -+-| -.+.+-.|... -..+|+++..--.++ ++.++.++..+...|
T Consensus 179 k~dP~~A~tnL~qR~~~~d~e---~WG~---~iV~~yLgkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 179 KLDPKQAKTNLKQRAEKSDKE---QWGW---NIVEFYLGKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred hCCHHHHHHHHHHHHHhccHh---hhhH---HHHHHHHhhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 23555555 355666544322 1211 11222333322 123344443322222 456777888888888
Q ss_pred ChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHH
Q psy17788 306 RVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEE 339 (365)
Q Consensus 306 ~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~ 339 (365)
++++|..+|+-++.. .-...+=.+|.-||.
T Consensus 252 ~~~~A~~LfKLaian----nVynfVE~RyA~~EL 281 (297)
T COG4785 252 DLDEATALFKLAVAN----NVYNFVEHRYALLEL 281 (297)
T ss_pred cHHHHHHHHHHHHHH----hHHHHHHHHHHHHHH
Confidence 999999999888873 223445556666654
No 228
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=97.52 E-value=0.0025 Score=50.86 Aligned_cols=111 Identities=21% Similarity=0.315 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHcCCC----------HHHHHHHHHHH
Q psy17788 129 EKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLY----GTKESLQECLHEAVRCNDE----------TKVYMNMMEIY 194 (365)
Q Consensus 129 e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~----g~~~~a~~v~~ral~~~~~----------~~~~~~l~~~~ 194 (365)
+..+..|+..|.... +..+-..+|..|+...... |.......++++++....+ ..+|+.++++.
T Consensus 2 ~~~r~~~e~~i~~~~--~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~ 79 (126)
T PF08311_consen 2 EQQRQEFEEQIRSYE--EGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLS 79 (126)
T ss_dssp HHHHHHHHHHHHCCG--GSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHcc--CCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHc
Confidence 345566777666444 1224577888888744322 3456677777777765421 22455444432
Q ss_pred HHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy17788 195 AASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGL 248 (365)
Q Consensus 195 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral 248 (365)
..+.++|..+..+..+ ...+..|..+|.++...|++.+|..+|+++|
T Consensus 80 ------~~~~~if~~l~~~~IG-~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 80 ------SDPREIFKFLYSKGIG-TKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp ------SHHHHHHHHHHHHTTS-TTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ------cCHHHHHHHHHHcCcc-HHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 2777777777765321 5667778888888888888888887777664
No 229
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=97.51 E-value=0.00018 Score=64.59 Aligned_cols=97 Identities=16% Similarity=0.270 Sum_probs=82.3
Q ss_pred CCC-CChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHH-HHhCCHHHH
Q psy17788 93 GEP-VSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLE-HLYGTKESL 170 (365)
Q Consensus 93 ~~p-~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~-~~~g~~~~a 170 (365)
..| ..+-.|.|+-...|+++.+|.+|+.+..+.+-+.+.-.+|..||+.+| .+.++|+--+.++ ...++++.+
T Consensus 87 sipqk~~f~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP-----~nvdlWI~~c~~e~~~~ani~s~ 161 (435)
T COG5191 87 SIPQKKIFELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHP-----LNVDLWIYCCAFELFEIANIESS 161 (435)
T ss_pred cccceeeEeeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCceeeeeeccchhhhhccHHHH
Confidence 345 556678888888999999999999999999999999999999999999 7789999766654 456899999
Q ss_pred HHHHHHHHHcCCC-HHHHHHHHHHH
Q psy17788 171 QECLHEAVRCNDE-TKVYMNMMEIY 194 (365)
Q Consensus 171 ~~v~~ral~~~~~-~~~~~~l~~~~ 194 (365)
+.+|.++++.||. +.+|..+..+.
T Consensus 162 Ra~f~~glR~N~~~p~iw~eyfr~E 186 (435)
T COG5191 162 RAMFLKGLRMNSRSPRIWIEYFRME 186 (435)
T ss_pred HHHHHhhhccCCCCchHHHHHHHHH
Confidence 9999999999984 56887765543
No 230
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.50 E-value=0.0042 Score=50.76 Aligned_cols=63 Identities=22% Similarity=0.241 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788 257 VTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVT 319 (365)
Q Consensus 257 ~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~ 319 (365)
+.++..++..+...|+++.|..++++++..+|-+-.+|..++.++...|+...|..+|+++..
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 456677788888999999999999999999999999999999999999999999999998865
No 231
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.012 Score=53.12 Aligned_cols=150 Identities=14% Similarity=0.150 Sum_probs=100.8
Q ss_pred HHhc-CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHH---HHHHHHH
Q psy17788 88 ELLQ-NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTS---LLNLEHL 163 (365)
Q Consensus 88 ~l~~-~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~---~~~l~~~ 163 (365)
.++. ++.+++...|..++...|+++.+-..|+.+++..|+.+.|..++.. .|.... ..-|.. .+.+..+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~----lP~~~~---~~~~~~l~a~i~ll~q 215 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA----LPLQAQ---DKAAHGLQAQIELLEQ 215 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh----Ccccch---hhHHHHHHHHHHHHHH
Confidence 3444 8888999999999999999999999999999999999999887753 554322 233333 3334333
Q ss_pred hCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHH
Q psy17788 164 YGTKESLQECLHEAVRCND-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARH 242 (365)
Q Consensus 164 ~g~~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 242 (365)
........ -+++.+..+| +..+-+.++..|...|+.+.|.+.+-.++++..+ -.+..+-..+..++.-.|..+.+-.
T Consensus 216 aa~~~~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~-~~d~~~Rk~lle~f~~~g~~Dp~~~ 293 (304)
T COG3118 216 AAATPEIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRG-FEDGEARKTLLELFEAFGPADPLVL 293 (304)
T ss_pred HhcCCCHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-ccCcHHHHHHHHHHHhcCCCCHHHH
Confidence 33322222 2344455566 5677788888888889998888888888877521 3445566666666666664444444
Q ss_pred HHHH
Q psy17788 243 ILQR 246 (365)
Q Consensus 243 ~l~r 246 (365)
.|+|
T Consensus 294 ~~RR 297 (304)
T COG3118 294 AYRR 297 (304)
T ss_pred HHHH
Confidence 4444
No 232
>KOG1464|consensus
Probab=97.49 E-value=0.012 Score=52.39 Aligned_cols=210 Identities=15% Similarity=0.230 Sum_probs=138.8
Q ss_pred CCC-CChHHHHHHhhcCCCCH----HHHHHHHHHHHcccCHHHHHHHHHHHHhhccCcc---c-cchHHHHHHHHHHHHH
Q psy17788 93 GEP-VSPDGFDRMLLGQPNNS----ELWVKYMAYHLQATEIEKARSIARRALTVINIRN---E-EDRLNVWTSLLNLEHL 163 (365)
Q Consensus 93 ~~p-~a~~~fe~~l~~~p~~~----~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~---~-~~~~~~w~~~~~l~~~ 163 (365)
..| +|+..|+++|...|... .+.-+.+....+.+++++-...|.+.|..+...- . ....+.-+.|+..-
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS-- 118 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS-- 118 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh--
Confidence 344 78899999999888754 5777888888999999999999998887443110 0 01233334444422
Q ss_pred hCCHHHHHHHHHH---HHHcCCCHHHH----HHHHHHHHHhCCHHHHHHHHHHHHHHhcC---------CCCcHHHHHHH
Q psy17788 164 YGTKESLQECLHE---AVRCNDETKVY----MNMMEIYAASAQIRDLESTVKLLLKKAGQ---------THSSVNIYLQC 227 (365)
Q Consensus 164 ~g~~~~a~~v~~r---al~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~al~~~~~---------~~~~~~~~~~~ 227 (365)
.+.+-....|+. |++-..+..+| ..++.+|...|.+.+..++++++-+..-. ..+-..++..-
T Consensus 119 -~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlE 197 (440)
T KOG1464|consen 119 -KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALE 197 (440)
T ss_pred -hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhH
Confidence 233333444443 33333344455 46788888888888888877776554310 02334566677
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCcchHH---HHHHH-HHHHHHcCCHHHHHHHHHHHHHhC-----CCChhH--HHH
Q psy17788 228 ATLLLRLGQKDTARHILQRGLNNLPPAVHVT---LITRF-ALAENKFGDASRAQALLEHTLTSY-----PARVDV--WGV 296 (365)
Q Consensus 228 a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~---~~~~~-a~~~~~~g~~e~A~~~fe~~l~~~-----P~~~~~--w~~ 296 (365)
.++|..+++...-..+|+++|.....-+|.. ++... |.++.+.|.+++|.+-|-.+.+.+ |.++.. +.+
T Consensus 198 IQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLV 277 (440)
T KOG1464|consen 198 IQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLV 277 (440)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHH
Confidence 7888888888889999999988754444432 22222 446677899999999999999875 444433 677
Q ss_pred HHHHHHhcC
Q psy17788 297 YVDMLVKSD 305 (365)
Q Consensus 297 ~~~~~~~~g 305 (365)
++.|+++.|
T Consensus 278 LANMLmkS~ 286 (440)
T KOG1464|consen 278 LANMLMKSG 286 (440)
T ss_pred HHHHHHHcC
Confidence 888888865
No 233
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.43 E-value=0.00018 Score=43.14 Aligned_cols=33 Identities=3% Similarity=0.179 Sum_probs=29.3
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHhcCChHHHH
Q psy17788 279 LLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGR 311 (365)
Q Consensus 279 ~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar 311 (365)
.|+++|+.+|+++.+|..++.++...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 378899999999999999999999999998886
No 234
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.41 E-value=0.1 Score=47.77 Aligned_cols=227 Identities=12% Similarity=0.090 Sum_probs=140.8
Q ss_pred HcccCHHHHHHHHHHHHhhccCcc---ccchHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHcCC----------C-----
Q psy17788 123 LQATEIEKARSIARRALTVINIRN---EEDRLNVWTSLLNLEHLYG-TKESLQECLHEAVRCND----------E----- 183 (365)
Q Consensus 123 ~~~~~~e~A~~~~~raL~~~p~~~---~~~~~~~w~~~~~l~~~~g-~~~~a~~v~~ral~~~~----------~----- 183 (365)
+..|+++.|..++.|+-...+... ...-..+.+..+.-....+ +++.|...+++|..+.+ +
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 568999999999998876442211 1122333444444445556 88999999999987731 1
Q ss_pred HHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CcchHHH
Q psy17788 184 TKVYMNMMEIYAASAQI---RDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLP-PAVHVTL 259 (365)
Q Consensus 184 ~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p-~~~~~~~ 259 (365)
..++..++..|...+.. ++|..+.+.+-..+ ++.+.++.....++.+.++.+.+...+.+++...+ .......
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~---~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~ 160 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEY---GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC---CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHH
Confidence 23667778888887765 45666666676666 77888888888888888999999999999998876 4445555
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChhHHHHHHHH---HH-hc-C------ChHHHHHHHHHHHh---CCCC
Q psy17788 260 ITRFALAENKFGDASRAQALLEHTLTS--YPARVDVWGVYVDM---LV-KS-D------RVDLGRQVIQRAVT---QKLP 323 (365)
Q Consensus 260 ~~~~a~~~~~~g~~e~A~~~fe~~l~~--~P~~~~~w~~~~~~---~~-~~-g------~~~~Ar~~~eral~---~~l~ 323 (365)
+............. .|...+..++.. .|..-. |..-+-+ .. .. + .++.+..+++++.. ..+.
T Consensus 161 ~l~~i~~l~~~~~~-~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls 238 (278)
T PF08631_consen 161 ILHHIKQLAEKSPE-LAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLS 238 (278)
T ss_pred HHHHHHHHHhhCcH-HHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCC
Confidence 55555555555444 444555454433 333222 4433221 11 11 1 14445555554333 2222
Q ss_pred CC----CcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy17788 324 PK----KLKPLYMKWLKLEEQYGDAEAVENVKKEIE 355 (365)
Q Consensus 324 ~~----~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~ 355 (365)
++ -...+|+..-..+ +.+++..|..-|+-|+
T Consensus 239 ~~~~~a~~~LLW~~~~~~~-~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 239 AEAASAIHTLLWNKGKKHY-KAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHH
Confidence 22 1245788866665 5789999999888776
No 235
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.39 E-value=0.0019 Score=54.02 Aligned_cols=93 Identities=11% Similarity=0.051 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcC----------ChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Q psy17788 200 IRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLG----------QKDTARHILQRGLNNLPPAVHVTLITRFALAENK 269 (365)
Q Consensus 200 ~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g----------~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~ 269 (365)
|+.|++.++...... |.+++.+++.|..++... .+++|..-|+.||.+.|+. ...+..+|+.+..
T Consensus 7 FE~ark~aea~y~~n---P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~--hdAlw~lGnA~ts 81 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN---PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNK--HDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC---cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCch--HHHHHHHHHHHHH
Confidence 466677777766666 777777777777665542 2455666677788888885 3455666776665
Q ss_pred cC-----------CHHHHHHHHHHHHHhCCCChhHHHHH
Q psy17788 270 FG-----------DASRAQALLEHTLTSYPARVDVWGVY 297 (365)
Q Consensus 270 ~g-----------~~e~A~~~fe~~l~~~P~~~~~w~~~ 297 (365)
++ .+++|...|++++...|++...+..+
T Consensus 82 ~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL 120 (186)
T PF06552_consen 82 LAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSL 120 (186)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred HHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 43 25678888888888999875554444
No 236
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.36 E-value=0.0013 Score=54.86 Aligned_cols=92 Identities=17% Similarity=0.181 Sum_probs=59.8
Q ss_pred ChHHHHHHhhcCCCCHHHHHHHHHHHHcccC----------HHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhC-
Q psy17788 97 SPDGFDRMLLGQPNNSELWVKYMAYHLQATE----------IEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYG- 165 (365)
Q Consensus 97 a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~----------~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g- 165 (365)
++..++.....+|.+++.++..+..++...+ +++|+.-|+.||.+.| +..+....+++.+..++
T Consensus 10 ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P-----~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 10 ARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINP-----NKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-T-----T-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCC-----chHHHHHHHHHHHHHHHh
Confidence 3455777788899999999999998865543 5667778888888888 66666666666665443
Q ss_pred ---C-------HHHHHHHHHHHHHcCCCHHHHHHHHHH
Q psy17788 166 ---T-------KESLQECLHEAVRCNDETKVYMNMMEI 193 (365)
Q Consensus 166 ---~-------~~~a~~v~~ral~~~~~~~~~~~l~~~ 193 (365)
+ ++.|...|++|+...|+..+|..-..+
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEM 122 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 1 456667777777777777766544443
No 237
>KOG1586|consensus
Probab=97.26 E-value=0.11 Score=45.33 Aligned_cols=121 Identities=6% Similarity=-0.061 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHHHHHhcCC---CCcHHHHHHHHHHHHHc-CChHHHHHHHHHHHhcCCCcch----HHHHHHHHHHHHHc
Q psy17788 199 QIRDLESTVKLLLKKAGQT---HSSVNIYLQCATLLLRL-GQKDTARHILQRGLNNLPPAVH----VTLITRFALAENKF 270 (365)
Q Consensus 199 ~~~~A~~~~~~al~~~~~~---~~~~~~~~~~a~~~~~~-g~~~~A~~~l~ral~~~p~~~~----~~~~~~~a~~~~~~ 270 (365)
+.++|..++++++..|... .--...+..+|.+|... .+++.|+..|+.+-........ -..+.+.|.+-..+
T Consensus 88 ~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~l 167 (288)
T KOG1586|consen 88 DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQL 167 (288)
T ss_pred ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHH
Confidence 5555555555555544100 11233445556665554 5667777777776554433221 23555566666667
Q ss_pred CCHHHHHHHHHHHHHhCCCChhH-------HHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788 271 GDASRAQALLEHTLTSYPARVDV-------WGVYVDMLVKSDRVDLGRQVIQRAVT 319 (365)
Q Consensus 271 g~~e~A~~~fe~~l~~~P~~~~~-------w~~~~~~~~~~g~~~~Ar~~~eral~ 319 (365)
+++.+|+.+|+++...--++.-+ ++.-+-|+...++.-.+...+++-..
T Consensus 168 eqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~ 223 (288)
T KOG1586|consen 168 EQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQE 223 (288)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHh
Confidence 77777777777776543333211 22233444444565556655555554
No 238
>KOG0985|consensus
Probab=97.24 E-value=0.058 Score=56.02 Aligned_cols=143 Identities=14% Similarity=0.136 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q psy17788 151 LNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATL 230 (365)
Q Consensus 151 ~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~ 230 (365)
+.+|..++......|....|++.|-+| +++..|...++.-.+.|++++....+..+-++. ..+.+=..+.-.
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~----~E~~id~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKV----REPYIDSELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh----cCccchHHHHHH
Confidence 578888888888888888888888775 466778888888888888988888888887773 344555555555
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHH
Q psy17788 231 LLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLG 310 (365)
Q Consensus 231 ~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~A 310 (365)
|.+.++..+-...+ .-|+..+ +...|.-++..|.++.|+-+|..+ .-|..++..+...|++..|
T Consensus 1176 yAkt~rl~elE~fi-----~gpN~A~---i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI-----AGPNVAN---IQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred HHHhchHHHHHHHh-----cCCCchh---HHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHH
Confidence 66666655544432 2455322 235566667777777776666433 4456666666666666555
Q ss_pred HHHHHHH
Q psy17788 311 RQVIQRA 317 (365)
Q Consensus 311 r~~~era 317 (365)
...-.+|
T Consensus 1240 VD~aRKA 1246 (1666)
T KOG0985|consen 1240 VDAARKA 1246 (1666)
T ss_pred HHHhhhc
Confidence 5444444
No 239
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.24 E-value=0.012 Score=55.79 Aligned_cols=173 Identities=16% Similarity=0.133 Sum_probs=112.1
Q ss_pred CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHH---HHHhCCHH
Q psy17788 92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNL---EHLYGTKE 168 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l---~~~~g~~~ 168 (365)
..+|+++. .+|..+|-+.+..+++..++..+|+...|..+.+|||-.+. .+|...... ....|.
T Consensus 23 ~~Dp~~l~---~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e--------~~~~~~F~~~~~~~~~g~-- 89 (360)
T PF04910_consen 23 SHDPNALI---NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFE--------RAFHPSFSPFRSNLTSGN-- 89 (360)
T ss_pred ccCHHHHH---HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--------HHHHHHhhhhhcccccCc--
Confidence 44665554 45788999999999999999999999999999999997554 233322211 111110
Q ss_pred HHHHHHHHHHHcCCCHH---HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHH-HHcCChHHHHHH
Q psy17788 169 SLQECLHEAVRCNDETK---VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHS-SVNIYLQCATLL-LRLGQKDTARHI 243 (365)
Q Consensus 169 ~a~~v~~ral~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~a~~~-~~~g~~~~A~~~ 243 (365)
.+=-|. ...+.. +..+++..+.+.|-+..|.++.+-++... |. +|-....++++| ++.++++--..+
T Consensus 90 -~rL~~~----~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLd---p~~DP~g~ll~ID~~ALrs~~y~~Li~~ 161 (360)
T PF04910_consen 90 -CRLDYR----RPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLD---PDEDPLGVLLFIDYYALRSRQYQWLIDF 161 (360)
T ss_pred -cccCCc----cccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC---CCCCcchhHHHHHHHHHhcCCHHHHHHH
Confidence 000000 001222 33555777778888888888888888877 55 666666666655 356677666666
Q ss_pred HHHHHh--------cCCCcchHHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHHhCCCC
Q psy17788 244 LQRGLN--------NLPPAVHVTLITRFALAENKFGDA---------------SRAQALLEHTLTSYPAR 290 (365)
Q Consensus 244 l~ral~--------~~p~~~~~~~~~~~a~~~~~~g~~---------------e~A~~~fe~~l~~~P~~ 290 (365)
++.... ..|+ +....+..++..++. +.|...+.+++..+|.-
T Consensus 162 ~~~~~~~~~~~~~~~lPn-----~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 162 SESPLAKCYRNWLSLLPN-----FAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred HHhHhhhhhhhhhhhCcc-----HHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 555433 2454 334456666666666 89999999999998854
No 240
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.23 E-value=0.066 Score=50.32 Aligned_cols=122 Identities=12% Similarity=0.161 Sum_probs=96.3
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCC-------
Q psy17788 183 ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQT-HSSVNIYLQCATLLLRLGQKDTARHILQRGLNN-LPP------- 253 (365)
Q Consensus 183 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~-~p~------- 253 (365)
....|..++.+..+.|.++-|...+.++....... ...+.+.+.++.++...|+..+|...++..+.. ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 34678999999999999999999999888743111 226889999999999999999999998888872 111
Q ss_pred ------------------------cchHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHh
Q psy17788 254 ------------------------AVHVTLITRFALAENKF------GDASRAQALLEHTLTSYPARVDVWGVYVDMLVK 303 (365)
Q Consensus 254 ------------------------~~~~~~~~~~a~~~~~~------g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~ 303 (365)
.....++..+|.+.... +..+.+...|..++..+|.....|..++.++.+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 225 AELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDK 304 (352)
T ss_pred HHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHH
Confidence 01245666777777777 888999999999999999999999999987754
Q ss_pred c
Q psy17788 304 S 304 (365)
Q Consensus 304 ~ 304 (365)
.
T Consensus 305 ~ 305 (352)
T PF02259_consen 305 L 305 (352)
T ss_pred H
Confidence 3
No 241
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=97.20 E-value=0.00078 Score=39.48 Aligned_cols=32 Identities=31% Similarity=0.689 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q psy17788 271 GDASRAQALLEHTLTSYPARVDVWGVYVDMLV 302 (365)
Q Consensus 271 g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~ 302 (365)
|+.+.++.+|++++..+|.++++|..|++++.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 45667777777777777777777777776653
No 242
>KOG1464|consensus
Probab=97.19 E-value=0.015 Score=51.75 Aligned_cols=162 Identities=13% Similarity=0.160 Sum_probs=95.3
Q ss_pred HcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc-------CCCHHHHHHHHHHHH
Q psy17788 123 LQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRC-------NDETKVYMNMMEIYA 195 (365)
Q Consensus 123 ~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~-------~~~~~~~~~l~~~~~ 195 (365)
+...+.++|..-|++.|..-|...+- .+.+.-..+.+..+.|++++....|.+.+.+ +-+........++-.
T Consensus 38 l~e~~p~~Al~sF~kVlelEgEKgeW-GFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiS 116 (440)
T KOG1464|consen 38 LKEDEPKEALSSFQKVLELEGEKGEW-GFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIS 116 (440)
T ss_pred ccccCHHHHHHHHHHHHhcccccchh-HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHh
Confidence 56778999999999999877632110 1344455666667777777766666665544 333444455555555
Q ss_pred HhCCHHHHHHHHHHHHHHhcCCCCcHHHHH----HHHHHHHHcCChHHHHHHHHHHHhcCCCcc----------hHHHHH
Q psy17788 196 ASAQIRDLESTVKLLLKKAGQTHSSVNIYL----QCATLLLRLGQKDTARHILQRGLNNLPPAV----------HVTLIT 261 (365)
Q Consensus 196 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~----~~a~~~~~~g~~~~A~~~l~ral~~~p~~~----------~~~~~~ 261 (365)
.+.+.+-..+.|+..+.... ...+..+|+ .++.+++..|.+.+-..++...-++..... .+.++.
T Consensus 117 tS~~m~LLQ~FYeTTL~ALk-dAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYA 195 (440)
T KOG1464|consen 117 TSKNMDLLQEFYETTLDALK-DAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYA 195 (440)
T ss_pred hhhhhHHHHHHHHHHHHHHH-hhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHh
Confidence 55666666777776665431 134445553 567777777777776666666555532211 123333
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17788 262 RFALAENKFGDASRAQALLEHTLTS 286 (365)
Q Consensus 262 ~~a~~~~~~g~~e~A~~~fe~~l~~ 286 (365)
--++++....+...-..+|++++..
T Consensus 196 lEIQmYT~qKnNKkLK~lYeqalhi 220 (440)
T KOG1464|consen 196 LEIQMYTEQKNNKKLKALYEQALHI 220 (440)
T ss_pred hHhhhhhhhcccHHHHHHHHHHHHh
Confidence 3345555666666667777777654
No 243
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.10 E-value=0.051 Score=53.51 Aligned_cols=159 Identities=13% Similarity=0.025 Sum_probs=110.8
Q ss_pred cccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHH------H----HhCCHHHHHHHHHHHHHcCCCHHHHHHH-HH
Q psy17788 124 QATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLE------H----LYGTKESLQECLHEAVRCNDETKVYMNM-ME 192 (365)
Q Consensus 124 ~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~------~----~~g~~~~a~~v~~ral~~~~~~~~~~~l-~~ 192 (365)
=.|+-+.+...+.++.+....+. .-.-+.++..+ . .....+.+.+++....+.+|+..+|.-. +.
T Consensus 200 F~gdR~~GL~~L~~~~~~~~i~~----~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR 275 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKSENIRS----PLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGR 275 (468)
T ss_pred cCCcHHHHHHHHHHHhccCCcch----HHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 34788888888888877433221 11111111111 0 2235688999999999999999888555 99
Q ss_pred HHHHhCCHHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcC
Q psy17788 193 IYAASAQIRDLESTVKLLLKKAGQTHS-SVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFG 271 (365)
Q Consensus 193 ~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g 271 (365)
++...|+.++|++.|++++..-..-++ ..-.+..++-.+....++++|...|.+.++...-. +....+..|.++...|
T Consensus 276 ~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WS-ka~Y~Y~~a~c~~~l~ 354 (468)
T PF10300_consen 276 LERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWS-KAFYAYLAAACLLMLG 354 (468)
T ss_pred HHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccH-HHHHHHHHHHHHHhhc
Confidence 999999999999999998853200011 12346677777888999999999999999865554 3444455677888899
Q ss_pred CH-------HHHHHHHHHHHHhC
Q psy17788 272 DA-------SRAQALLEHTLTSY 287 (365)
Q Consensus 272 ~~-------e~A~~~fe~~l~~~ 287 (365)
+. ++|..+|.++-...
T Consensus 355 ~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 355 REEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred cchhhhhhHHHHHHHHHHHHHHH
Confidence 88 88888888876543
No 244
>KOG3616|consensus
Probab=97.05 E-value=0.061 Score=54.07 Aligned_cols=153 Identities=15% Similarity=0.139 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH------HHH--hcCCCC-cHHHHHHHHHHHHHcCChHHHHHHHHHH---------
Q psy17788 186 VYMNMMEIYAASAQIRDLESTVKLL------LKK--AGQTHS-SVNIYLQCATLLLRLGQKDTARHILQRG--------- 247 (365)
Q Consensus 186 ~~~~l~~~~~~~g~~~~A~~~~~~a------l~~--~~~~~~-~~~~~~~~a~~~~~~g~~~~A~~~l~ra--------- 247 (365)
+|-.-+++|.+..++++|.++|++. ++. |.. |. -.++-...+.-+...|+++.|...|-.|
T Consensus 663 lydkagdlfeki~d~dkale~fkkgdaf~kaielarfaf-p~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaiea 741 (1636)
T KOG3616|consen 663 LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAF-PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEA 741 (1636)
T ss_pred HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhC-cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHH
Confidence 4455566666777777777776543 221 100 11 1223334455566666666655443221
Q ss_pred ----------HhcCCC----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHH
Q psy17788 248 ----------LNNLPP----AVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQV 313 (365)
Q Consensus 248 ----------l~~~p~----~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~ 313 (365)
+.+..+ ......|-..+.-+...|+++.|..+|..+ ++....++||.+.|.+..|-.+
T Consensus 742 ai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~--------~~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA--------DLFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc--------chhHHHHHHHhccccHHHHHHH
Confidence 111110 000112223456666778888888888665 4556678888889999888888
Q ss_pred HHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q psy17788 314 IQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVK 351 (365)
Q Consensus 314 ~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~ 351 (365)
-+++.. |.....+|..-.+=...||.+..++.+|
T Consensus 814 a~e~~~----~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 814 AEECHG----PEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHhcC----chhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 777753 3334444544444444577777777655
No 245
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.03 E-value=0.025 Score=46.17 Aligned_cols=61 Identities=11% Similarity=0.079 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy17788 186 VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLN 249 (365)
Q Consensus 186 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~ 249 (365)
+...++..+...|++++|..++++++... |.+..+|..+..++...|+...|...|+++..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d---P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD---PYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS---TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45566777778888888888888888887 88888888888888888888888888877644
No 246
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.99 E-value=0.0018 Score=38.34 Aligned_cols=30 Identities=17% Similarity=0.277 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q psy17788 223 IYLQCATLLLRLGQKDTARHILQRGLNNLP 252 (365)
Q Consensus 223 ~~~~~a~~~~~~g~~~~A~~~l~ral~~~p 252 (365)
+|..+|.++...|++++|+..|++++...|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 344444444444444444444444444444
No 247
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.074 Score=48.05 Aligned_cols=149 Identities=15% Similarity=0.087 Sum_probs=74.6
Q ss_pred hCCHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHHcCChHHHH
Q psy17788 164 YGTKESLQECLHEAVRCNDET-KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSS-VNIYLQCATLLLRLGQKDTAR 241 (365)
Q Consensus 164 ~g~~~~a~~v~~ral~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~a~~~~~~g~~~~A~ 241 (365)
.|++..+...|..+++..|.. .+-..|+.+|...|+.+.|..++..+-... ... .........++.+.....+..
T Consensus 147 ~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~---~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 147 AEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQA---QDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccc---hhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 455666666666666665533 455666666666666666666665543322 111 111111233444433333332
Q ss_pred HHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy17788 242 HILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPA--RVDVWGVYVDMLVKSDRVDLGRQVIQRAV 318 (365)
Q Consensus 242 ~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~--~~~~w~~~~~~~~~~g~~~~Ar~~~eral 318 (365)
. +++.+..+|.+ +..-+.+|..+...|+.+.|...+-.+++.+-. +..+-..+.+++.-.|.-+-+-..|.|=+
T Consensus 224 ~-l~~~~aadPdd--~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRkL 299 (304)
T COG3118 224 D-LQRRLAADPDD--VEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRKL 299 (304)
T ss_pred H-HHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 2 33444456654 334455566666666666666666666655332 34445555555555554444444444433
No 248
>KOG4642|consensus
Probab=96.97 E-value=0.0094 Score=51.97 Aligned_cols=111 Identities=14% Similarity=0.018 Sum_probs=66.4
Q ss_pred hCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHH
Q psy17788 197 SAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRA 276 (365)
Q Consensus 197 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A 276 (365)
..++..|+..|.+++... |..+..|.+-+..+++.++++.+..--.||++..|+. +.....+|.+......++.|
T Consensus 23 ~k~y~~ai~~y~raI~~n---P~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~--vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICIN---PTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNL--VKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred hhhhchHHHHHHHHHhcC---CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHH--HHHHHHHHHHHHhhccccHH
Confidence 345666666777776665 6666677777777777777776666666777766663 44445556666666666777
Q ss_pred HHHHHHHHHh-----CCCChhHHHHHHHHHHhcCChHHHHH
Q psy17788 277 QALLEHTLTS-----YPARVDVWGVYVDMLVKSDRVDLGRQ 312 (365)
Q Consensus 277 ~~~fe~~l~~-----~P~~~~~w~~~~~~~~~~g~~~~Ar~ 312 (365)
+..++++..+ .|.-.++|..+.+.-.+.=...+.+.
T Consensus 98 I~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~R 138 (284)
T KOG4642|consen 98 IKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKR 138 (284)
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHH
Confidence 7777666432 22234566655554433333333333
No 249
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=96.96 E-value=0.42 Score=46.44 Aligned_cols=217 Identities=10% Similarity=0.050 Sum_probs=135.5
Q ss_pred CCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHH-
Q psy17788 109 PNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVY- 187 (365)
Q Consensus 109 p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~- 187 (365)
|-+....+.++..+-+.....-...++.|.|. +. ++--....++.++... ..+..-.+|+|.++++-+..+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~-~~-----e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ 135 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLE-YG-----ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIG 135 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHH-hc-----chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHH
Confidence 44445555666666666666667778888887 44 4456677788888766 6678899999999988776666
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHH
Q psy17788 188 MNMMEIYAASAQIRDLESTVKLLLKKAGQTHSS---VNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFA 264 (365)
Q Consensus 188 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a 264 (365)
..++..|.+ ++.+.+...|.+++.+|.+..++ ..+|..+..+- -.+.+....+..+.-..+... ...+++...
T Consensus 136 ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~-~~~Vl~qdv 211 (711)
T COG1747 136 RELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEG-RGSVLMQDV 211 (711)
T ss_pred HHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccc-hHHHHHHHH
Confidence 566777766 88899999999999988533333 34676665432 234555555555543333332 233334333
Q ss_pred -HHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHh-cCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHh
Q psy17788 265 -LAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVK-SDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQ 340 (365)
Q Consensus 265 -~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~-~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~ 340 (365)
.-|....++++|..+...+++.+.++.-+--..+..+.. ..+......++... +. ......++..+.+|++.
T Consensus 212 ~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s---~i-~~~~rnf~~~l~dFek~ 285 (711)
T COG1747 212 YKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKIS---NI-SQSGRNFFEALNDFEKL 285 (711)
T ss_pred HHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhc---ch-hhccccHHHHHHHHHHH
Confidence 344456789999999999999988876665555555432 22222223333221 11 12234566666666653
No 250
>KOG1586|consensus
Probab=96.94 E-value=0.11 Score=45.34 Aligned_cols=128 Identities=19% Similarity=0.142 Sum_probs=90.8
Q ss_pred CCHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHhcCC---CCcHHHHHHHHHHHHH
Q psy17788 165 GTKESLQECLHEAVRCNDE-------TKVYMNMMEIYAAS-AQIRDLESTVKLLLKKAGQT---HSSVNIYLQCATLLLR 233 (365)
Q Consensus 165 g~~~~a~~v~~ral~~~~~-------~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~a~~~~~ 233 (365)
+++++|..++++++++..+ ..-+..++.+|..- .++++|+..|+.+-.-|... ...-+.++..+.+-..
T Consensus 87 ~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~ 166 (288)
T KOG1586|consen 87 VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQ 166 (288)
T ss_pred cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHH
Confidence 3677777777777776542 22345678888765 78999999999998876221 2224567888888888
Q ss_pred cCChHHHHHHHHHHHhcCCCcch-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh
Q psy17788 234 LGQKDTARHILQRGLNNLPPAVH-----VTLITRFALAENKFGDASRAQALLEHTLTSYPARVD 292 (365)
Q Consensus 234 ~g~~~~A~~~l~ral~~~p~~~~-----~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~ 292 (365)
.+++.+|+.+|++.....-+++. -.-+.+-|.|+.-.++.-.+...+++....+|...+
T Consensus 167 leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 167 LEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 99999999999987665333221 113345566766678888888899999999997654
No 251
>KOG2610|consensus
Probab=96.93 E-value=0.038 Score=50.65 Aligned_cols=152 Identities=10% Similarity=0.003 Sum_probs=112.5
Q ss_pred CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCcccc-chHHHHHHHHHHHHHhCCHHHH
Q psy17788 92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEE-DRLNVWTSLLNLEHLYGTKESL 170 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~-~~~~~w~~~~~l~~~~g~~~~a 170 (365)
+..++|....+++|...|.+.-+|..--..+.-.|+.+.-+..+++.+..-. +.. -...+--.|+-.....|-++.|
T Consensus 117 g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn--~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWN--ADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred ccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccC--CCCcHHHHHHHHHHhhHHHhccchhH
Confidence 5677999999999999999999999888888889999999999998765411 111 1223333344445677899999
Q ss_pred HHHHHHHHHcCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHHcCChHHHHHHHH
Q psy17788 171 QECLHEAVRCNDETK-VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSS----VNIYLQCATLLLRLGQKDTARHILQ 245 (365)
Q Consensus 171 ~~v~~ral~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~a~~~~~~g~~~~A~~~l~ 245 (365)
.+.-.+++++|+... +....+.++...|++.++.+...+.-... .++ ..-|-..|.++...+.++.|..+|+
T Consensus 195 Ek~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~W---r~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 195 EKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDW---RQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred HHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccch---hhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 999999999998654 55677888888999999988765544333 211 1224455677788899999999998
Q ss_pred HHH
Q psy17788 246 RGL 248 (365)
Q Consensus 246 ral 248 (365)
+-+
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 754
No 252
>KOG2471|consensus
Probab=96.93 E-value=0.25 Score=47.64 Aligned_cols=124 Identities=10% Similarity=-0.028 Sum_probs=88.5
Q ss_pred cCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHH-hhccCc---cccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-cC
Q psy17788 107 GQPNNSELWVKYMAYHLQATEIEKARSIARRAL-TVINIR---NEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVR-CN 181 (365)
Q Consensus 107 ~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL-~~~p~~---~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~-~~ 181 (365)
...+++.....-..++.-.|++.+|...+-+.= ...|.. .+-..--.|..+.-+..+.|.+..+..+|.+|++ .+
T Consensus 235 ~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c 314 (696)
T KOG2471|consen 235 IAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSC 314 (696)
T ss_pred hcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHH
Confidence 334666666666777777888888887664321 111110 0001223466666677788899999999999996 11
Q ss_pred --------C----------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q psy17788 182 --------D----------ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLR 233 (365)
Q Consensus 182 --------~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~ 233 (365)
| ...+.+..+-.|...|+.-.|.++|.++++.| ..+|.+|+.++.++..
T Consensus 315 ~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf---h~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 315 SQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF---HRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH---hcCcHHHHHHHHHHHH
Confidence 1 34567788889999999999999999999999 9999999999998754
No 253
>KOG4648|consensus
Probab=96.92 E-value=0.0058 Score=55.94 Aligned_cols=89 Identities=16% Similarity=0.128 Sum_probs=42.2
Q ss_pred HHhCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHH
Q psy17788 162 HLYGTKESLQECLHEAVRCND-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTA 240 (365)
Q Consensus 162 ~~~g~~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A 240 (365)
...|.+++|+++|.+++...| +...+..-+..|.+..+|..|..-+..++... ....++|...+..-...|+..+|
T Consensus 108 FKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd---~~Y~KAYSRR~~AR~~Lg~~~EA 184 (536)
T KOG4648|consen 108 FKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD---KLYVKAYSRRMQARESLGNNMEA 184 (536)
T ss_pred hhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh---HHHHHHHHHHHHHHHHHhhHHHH
Confidence 344444445555555444444 22333444444444445555544444444443 33444444444444444555555
Q ss_pred HHHHHHHHhcCCC
Q psy17788 241 RHILQRGLNNLPP 253 (365)
Q Consensus 241 ~~~l~ral~~~p~ 253 (365)
..-++++|...|+
T Consensus 185 KkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 185 KKDCETVLALEPK 197 (536)
T ss_pred HHhHHHHHhhCcc
Confidence 5555555554444
No 254
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.89 E-value=0.0021 Score=38.17 Aligned_cols=32 Identities=25% Similarity=0.366 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q psy17788 222 NIYLQCATLLLRLGQKDTARHILQRGLNNLPP 253 (365)
Q Consensus 222 ~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~ 253 (365)
.+|..+|.++...|++++|...|+++|+..|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555543
No 255
>KOG4642|consensus
Probab=96.77 E-value=0.026 Score=49.26 Aligned_cols=82 Identities=18% Similarity=0.154 Sum_probs=73.8
Q ss_pred CHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHH
Q psy17788 166 TKESLQECLHEAVRCNDETKVY-MNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHIL 244 (365)
Q Consensus 166 ~~~~a~~v~~ral~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l 244 (365)
.+..|+..|-+||..+|....| ..-+..+.+..+++.+..-..++++.. |+..+..+.++.+.+....+++|+..+
T Consensus 25 ~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~---~N~vk~h~flg~~~l~s~~~~eaI~~L 101 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD---PNLVKAHYFLGQWLLQSKGYDEAIKVL 101 (284)
T ss_pred hhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC---hHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 5778899999999999988555 667999999999999999999999988 899999999999999999999999999
Q ss_pred HHHHhc
Q psy17788 245 QRGLNN 250 (365)
Q Consensus 245 ~ral~~ 250 (365)
+||...
T Consensus 102 qra~sl 107 (284)
T KOG4642|consen 102 QRAYSL 107 (284)
T ss_pred HHHHHH
Confidence 999654
No 256
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.76 E-value=0.0047 Score=36.50 Aligned_cols=32 Identities=19% Similarity=0.180 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy17788 259 LITRFALAENKFGDASRAQALLEHTLTSYPAR 290 (365)
Q Consensus 259 ~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~ 290 (365)
++..+|.+++..|++++|+..|++++..+|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 56667888888888888888888888888764
No 257
>KOG2610|consensus
Probab=96.74 E-value=0.23 Score=45.71 Aligned_cols=172 Identities=10% Similarity=-0.032 Sum_probs=112.4
Q ss_pred HhCCHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHHcCChHHH
Q psy17788 163 LYGTKESLQECLHEAVRCNDETK-VYMNMMEIYAASAQIRDLESTVKLLLKKAG-QTHSSVNIYLQCATLLLRLGQKDTA 240 (365)
Q Consensus 163 ~~g~~~~a~~v~~ral~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~a~~~~~~g~~~~A 240 (365)
..|+..+|-..+++.++-+|..- .+...-..+.-.|+....+..+++++-+.. ..|....+.-.|+-.+...|-+++|
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 34666777778888888777554 344445566667888888888888887642 1144455666667677788888888
Q ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----hhHHHHHHHHHHhcCChHHHHHHHHH
Q psy17788 241 RHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPAR----VDVWGVYVDMLVKSDRVDLGRQVIQR 316 (365)
Q Consensus 241 ~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~----~~~w~~~~~~~~~~g~~~~Ar~~~er 316 (365)
...-+|+++++|.+ .+.....+.++...|++.+|....++.-...... ..-|.-.+-+++..+.++.|..+|++
T Consensus 195 Ek~A~ralqiN~~D--~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 195 EKQADRALQINRFD--CWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHhhccCCCcc--hHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 88888888888874 5555555667777888888888776653322211 11133345566777888888888888
Q ss_pred HHhCCCCCCCcHHHHHHHHHH
Q psy17788 317 AVTQKLPPKKLKPLYMKWLKL 337 (365)
Q Consensus 317 al~~~l~~~~~~~~~~~~l~~ 337 (365)
-+-..+. +.......-|++.
T Consensus 273 ei~k~l~-k~Da~a~~~~ld~ 292 (491)
T KOG2610|consen 273 EIWKRLE-KDDAVARDVYLDL 292 (491)
T ss_pred HHHHHhh-ccchhhhhhhhhh
Confidence 7764443 3344444444444
No 258
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.74 E-value=0.52 Score=44.66 Aligned_cols=165 Identities=10% Similarity=0.028 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHhcCCCCcHH
Q psy17788 151 LNVWTSLLNLEHLYGTKESLQECLHEAVRCN-----DETKVYMNMMEIYAA---SAQIRDLESTVKLLLKKAGQTHSSVN 222 (365)
Q Consensus 151 ~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~-----~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~ 222 (365)
.++.+.++--+....+++..+.+.+..-... ....+-..++-.+.+ .|+.++|+.++..++.... +.+++
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~--~~~~d 218 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDE--NPDPD 218 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccC--CCChH
Confidence 4555555555666667888888877754431 133455677888888 8999999999998665542 77889
Q ss_pred HHHHHHHHHHHc---------CChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------H-
Q psy17788 223 IYLQCATLLLRL---------GQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTL-------T- 285 (365)
Q Consensus 223 ~~~~~a~~~~~~---------g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l-------~- 285 (365)
++-.+|.+|-.. ...+.|...|.++....|+. ..-.+++.++.-.|.......-.+++. .
T Consensus 219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~---Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~ 295 (374)
T PF13281_consen 219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY---YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGR 295 (374)
T ss_pred HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc---cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHh
Confidence 999999988542 24678999999999888653 334566777777775433332222222 1
Q ss_pred --hCCCChhHHH--HHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788 286 --SYPARVDVWG--VYVDMLVKSDRVDLGRQVIQRAVTQ 320 (365)
Q Consensus 286 --~~P~~~~~w~--~~~~~~~~~g~~~~Ar~~~eral~~ 320 (365)
...+..+.|. .++.+.+-.|+.+.|...+++++.+
T Consensus 296 kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 296 KGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred hccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 1112344553 4667777889999999999999974
No 259
>KOG3616|consensus
Probab=96.66 E-value=0.54 Score=47.60 Aligned_cols=142 Identities=16% Similarity=0.116 Sum_probs=73.4
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Q psy17788 188 MNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAE 267 (365)
Q Consensus 188 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~ 267 (365)
-..++.|...|+++.|.++|.++=. ......+|-+.|+++.|..+-..+. -|. ..+.+|..-+.-.
T Consensus 769 ~~iadhyan~~dfe~ae~lf~e~~~-----------~~dai~my~k~~kw~da~kla~e~~--~~e-~t~~~yiakaedl 834 (1636)
T KOG3616|consen 769 GEIADHYANKGDFEIAEELFTEADL-----------FKDAIDMYGKAGKWEDAFKLAEECH--GPE-ATISLYIAKAEDL 834 (1636)
T ss_pred hHHHHHhccchhHHHHHHHHHhcch-----------hHHHHHHHhccccHHHHHHHHHHhc--Cch-hHHHHHHHhHHhH
Confidence 3456677777788888777755422 2234456667778887777655543 122 2344455445555
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHH
Q psy17788 268 NKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAV 347 (365)
Q Consensus 268 ~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a 347 (365)
-++|.+.+|..+|-.+ ..|+ ..+.||-+.|..+....+.++- .+..+...-+.+..-....|+...+
T Consensus 835 dehgkf~eaeqlyiti--~~p~------~aiqmydk~~~~ddmirlv~k~-----h~d~l~dt~~~f~~e~e~~g~lkaa 901 (1636)
T KOG3616|consen 835 DEHGKFAEAEQLYITI--GEPD------KAIQMYDKHGLDDDMIRLVEKH-----HGDHLHDTHKHFAKELEAEGDLKAA 901 (1636)
T ss_pred HhhcchhhhhheeEEc--cCch------HHHHHHHhhCcchHHHHHHHHh-----ChhhhhHHHHHHHHHHHhccChhHH
Confidence 5677776665555222 1222 1234455555555444444443 2233334444444433445666555
Q ss_pred HHHHHHHHH
Q psy17788 348 ENVKKEIEQ 356 (365)
Q Consensus 348 ~~v~~kA~~ 356 (365)
+.-|-+|-+
T Consensus 902 e~~flea~d 910 (1636)
T KOG3616|consen 902 EEHFLEAGD 910 (1636)
T ss_pred HHHHHhhhh
Confidence 555544443
No 260
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.60 E-value=0.0056 Score=36.31 Aligned_cols=32 Identities=19% Similarity=0.166 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17788 258 TLITRFALAENKFGDASRAQALLEHTLTSYPA 289 (365)
Q Consensus 258 ~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~ 289 (365)
.+|...|.++...|+++.|...|+++++.+|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35667778888888888888888888887776
No 261
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=96.59 E-value=0.004 Score=36.27 Aligned_cols=32 Identities=31% Similarity=0.565 Sum_probs=24.3
Q ss_pred cCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHH
Q psy17788 126 TEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEH 162 (365)
Q Consensus 126 ~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~ 162 (365)
|+++.|+.+|++++...| ....+|..|+.++.
T Consensus 1 ~~~~~~r~i~e~~l~~~~-----~~~~~W~~y~~~e~ 32 (33)
T smart00386 1 GDIERARKIYERALEKFP-----KSVELWLKYAEFEE 32 (33)
T ss_pred CcHHHHHHHHHHHHHHCC-----CChHHHHHHHHHHh
Confidence 456778888888888777 56788888887763
No 262
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=96.57 E-value=0.049 Score=43.14 Aligned_cols=105 Identities=22% Similarity=0.316 Sum_probs=65.4
Q ss_pred HHHHHHH-hcCCCcchHHHHHHHHHHHHH---cC-CHHHHHHHHHHHHHh---------CCCChhHHHHHHHHHHhcCCh
Q psy17788 242 HILQRGL-NNLPPAVHVTLITRFALAENK---FG-DASRAQALLEHTLTS---------YPARVDVWGVYVDMLVKSDRV 307 (365)
Q Consensus 242 ~~l~ral-~~~p~~~~~~~~~~~a~~~~~---~g-~~e~A~~~fe~~l~~---------~P~~~~~w~~~~~~~~~~g~~ 307 (365)
..|+..| .....+..+.+|..++..... .| .-..-..+++++++. +|....+|+.|+++.
T Consensus 6 ~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~------ 79 (125)
T smart00777 6 QAFEQELQDLYEGDDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC------ 79 (125)
T ss_pred HHHHHHHHhcccCCCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc------
Confidence 3444444 323333345555555554432 12 222334445555543 444467899999873
Q ss_pred HHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy17788 308 DLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKE 353 (365)
Q Consensus 308 ~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~k 353 (365)
+..+.+|.-+..... ......+|..|..+....|+...|..|+++
T Consensus 80 ~dp~~if~~L~~~~I-G~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 80 DEPRELFQFLYSKGI-GTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CCHHHHHHHHHHCCc-chhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 335778888877444 345778999999999999999999999875
No 263
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.56 E-value=0.36 Score=44.13 Aligned_cols=161 Identities=11% Similarity=0.039 Sum_probs=91.3
Q ss_pred HHhCCHHHHHHHHHHHHHcC----CC-----HHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHhcC----C---CC----c
Q psy17788 162 HLYGTKESLQECLHEAVRCN----DE-----TKVYMNMMEIYAASA-QIRDLESTVKLLLKKAGQ----T---HS----S 220 (365)
Q Consensus 162 ~~~g~~~~a~~v~~ral~~~----~~-----~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~----~---~~----~ 220 (365)
...|+.+.|...+.++-... |+ ..+++..+.-....+ +++.|...++++.+.... . +. .
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 35678888888888875433 21 114444555555666 888888888888887411 0 11 1
Q ss_pred HHHHHHHHHHHHHcCChH---HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hhHH
Q psy17788 221 VNIYLQCATLLLRLGQKD---TARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPAR---VDVW 294 (365)
Q Consensus 221 ~~~~~~~a~~~~~~g~~~---~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~---~~~w 294 (365)
..+...++..++..+.++ +|..+++-+-...|+.+.+.++. ..+..+.++.+.+...+.+++...+-. .+..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~--l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~ 161 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLK--LEILLKSFDEEEYEEILMRMIRSVDHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHH--HHHHhccCChhHHHHHHHHHHHhcccccchHHHH
Confidence 235666677777766543 44455555444456643333222 344444777888888888888776522 3333
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q psy17788 295 GVYVDMLVKSDRVDLGRQVIQRAVTQKLPPK 325 (365)
Q Consensus 295 ~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~ 325 (365)
..-+.-+... ....+...+.+.+..++.+.
T Consensus 162 l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 162 LHHIKQLAEK-SPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHHHHHhh-CcHHHHHHHHHHHHHHhCCC
Confidence 3333333333 33456666666666555444
No 264
>KOG2471|consensus
Probab=96.51 E-value=0.02 Score=54.88 Aligned_cols=118 Identities=12% Similarity=0.116 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH-HHh-cCC--CC--cHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------
Q psy17788 185 KVYMNMMEIYAASAQIRDLESTVKLLL-KKA-GQT--HS--SVNIYLQCATLLLRLGQKDTARHILQRGLNN-------- 250 (365)
Q Consensus 185 ~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~-~~~--~~--~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~-------- 250 (365)
.....-.+++.-.|++..|.+++...- ..- |+. |+ ..-.|.++|-++++.|.+.-+..+|.+||+.
T Consensus 241 ~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g 320 (696)
T KOG2471|consen 241 MALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNG 320 (696)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 344445888889999999988875432 111 111 11 3456889999999999999999999999961
Q ss_pred --------CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q psy17788 251 --------LPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLV 302 (365)
Q Consensus 251 --------~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~ 302 (365)
+...+...+++..|..+...|++-.|...|..++..+-.++.+|..++.+.+
T Consensus 321 ~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 321 LKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI 380 (696)
T ss_pred CCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 1223457788999999999999999999999999999999999999998765
No 265
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.42 E-value=0.0071 Score=35.38 Aligned_cols=32 Identities=25% Similarity=0.410 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy17788 259 LITRFALAENKFGDASRAQALLEHTLTSYPAR 290 (365)
Q Consensus 259 ~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~ 290 (365)
.+..+|.++.+.|++++|+.+|++++..+|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 34566778888888888888888888888864
No 266
>KOG2041|consensus
Probab=96.40 E-value=0.61 Score=46.97 Aligned_cols=84 Identities=11% Similarity=0.063 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q psy17788 221 VNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDM 300 (365)
Q Consensus 221 ~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~ 300 (365)
..+|...|+.+...-.+++|.++|..+-. .-.++.++++...++. ++.+....|.+..+.-.+++|
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~----------~e~~~ecly~le~f~~----LE~la~~Lpe~s~llp~~a~m 861 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYCGD----------TENQIECLYRLELFGE----LEVLARTLPEDSELLPVMADM 861 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc----------hHhHHHHHHHHHhhhh----HHHHHHhcCcccchHHHHHHH
Confidence 34566666666666666666666654311 0122334444433332 345556779999999999999
Q ss_pred HHhcCChHHHHHHHHHHH
Q psy17788 301 LVKSDRVDLGRQVIQRAV 318 (365)
Q Consensus 301 ~~~~g~~~~Ar~~~eral 318 (365)
+...|.-++|...|-|..
T Consensus 862 f~svGMC~qAV~a~Lr~s 879 (1189)
T KOG2041|consen 862 FTSVGMCDQAVEAYLRRS 879 (1189)
T ss_pred HHhhchHHHHHHHHHhcc
Confidence 999999999998887763
No 267
>KOG1308|consensus
Probab=96.39 E-value=0.012 Score=53.89 Aligned_cols=126 Identities=13% Similarity=0.098 Sum_probs=91.9
Q ss_pred HHHHHHHhcCCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHH
Q psy17788 83 RQAEDELLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEH 162 (365)
Q Consensus 83 ~~~e~~l~~~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~ 162 (365)
.+.-+++.++...++++.|.+++..+|.+..++...+..+++.+....|+.-+..|+.+.|.. ....-|..+++ .
T Consensus 119 ~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds---a~~ykfrg~A~--r 193 (377)
T KOG1308|consen 119 VQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS---AKGYKFRGYAE--R 193 (377)
T ss_pred HHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccc---ccccchhhHHH--H
Confidence 344455666777799999999999999999999999999999999999999999999966632 23344555554 5
Q ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q psy17788 163 LYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKK 213 (365)
Q Consensus 163 ~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 213 (365)
..|+++.+.+.|..++++.-+..+=-.+-.+.-..++.++-+..|++..+.
T Consensus 194 llg~~e~aa~dl~~a~kld~dE~~~a~lKeV~p~a~ki~e~~~k~er~~~e 244 (377)
T KOG1308|consen 194 LLGNWEEAAHDLALACKLDYDEANSATLKEVFPNAGKIEEHRRKYERAREE 244 (377)
T ss_pred HhhchHHHHHHHHHHHhccccHHHHHHHHHhccchhhhhhchhHHHHHHHH
Confidence 568999999999999887543332222333444455555556666665543
No 268
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.39 E-value=0.42 Score=45.39 Aligned_cols=167 Identities=11% Similarity=0.055 Sum_probs=99.1
Q ss_pred HcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH--cCChHHHHHHHHHHHhcCCCcc
Q psy17788 179 RCND-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLR--LGQKDTARHILQRGLNNLPPAV 255 (365)
Q Consensus 179 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~--~g~~~~A~~~l~ral~~~p~~~ 255 (365)
+.+| ....+++++.++.++|+...|.++.++++-.+ .......+..+... .|. ++--|.+ ..+..
T Consensus 34 ~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~-----e~~~~~~F~~~~~~~~~g~---~rL~~~~----~eNR~ 101 (360)
T PF04910_consen 34 QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAF-----ERAFHPSFSPFRSNLTSGN---CRLDYRR----PENRQ 101 (360)
T ss_pred HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----HHHHHHHhhhhhcccccCc---cccCCcc----ccchH
Confidence 3455 45677888888888888888888888887655 11111111110000 010 0000000 01122
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChhHHHHHHHHH-HhcCChHHHHHHHHHHHhC---C---CCCCCc
Q psy17788 256 HVTLITRFALAENKFGDASRAQALLEHTLTSYPA-RVDVWGVYVDML-VKSDRVDLGRQVIQRAVTQ---K---LPPKKL 327 (365)
Q Consensus 256 ~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~-~~~~w~~~~~~~-~~~g~~~~Ar~~~eral~~---~---l~~~~~ 327 (365)
-..++.+++....+.|-+..|.++..-++..+|. ++..-...+|.+ .+.++++--..+++..... . .-|+
T Consensus 102 fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn-- 179 (360)
T PF04910_consen 102 FFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN-- 179 (360)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc--
Confidence 2445667778888889999999999999999998 787778888876 4667777777777765431 0 0111
Q ss_pred HHHHHHHHHHHHhcCCH---------------HHHHHHHHHHHHHHHhh
Q psy17788 328 KPLYMKWLKLEEQYGDA---------------EAVENVKKEIEQYVRNS 361 (365)
Q Consensus 328 ~~~~~~~l~~e~~~G~~---------------~~a~~v~~kA~~~v~~~ 361 (365)
..|..-+.... .|+. +.|.....+|+..++..
T Consensus 180 -~a~S~aLA~~~-l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 180 -FAFSIALAYFR-LEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred -HHHHHHHHHHH-hcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 33333333332 3333 78888888988877653
No 269
>KOG0985|consensus
Probab=96.36 E-value=1.1 Score=47.21 Aligned_cols=182 Identities=14% Similarity=0.138 Sum_probs=115.0
Q ss_pred CCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHH
Q psy17788 109 PNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYM 188 (365)
Q Consensus 109 p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~~ 188 (365)
-+.+.+|.+++...++.|.+.+|++-|-+|=. | ..+...++...+.|.++.....+.-|-+.-..+.+=.
T Consensus 1101 ~n~p~vWsqlakAQL~~~~v~dAieSyikadD--p--------s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~ 1170 (1666)
T KOG0985|consen 1101 CNEPAVWSQLAKAQLQGGLVKDAIESYIKADD--P--------SNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS 1170 (1666)
T ss_pred hCChHHHHHHHHHHHhcCchHHHHHHHHhcCC--c--------HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH
Confidence 35679999999999999999999998876532 3 4577778888889999999888877766555555556
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Q psy17788 189 NMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAEN 268 (365)
Q Consensus 189 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~ 268 (365)
.++-.|.+.++..+..+.. . .+|.--.-..|+-++..|.++.|.-+|.- +.-|.+++..+.
T Consensus 1171 eLi~AyAkt~rl~elE~fi------~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~----------vSN~a~La~TLV 1231 (1666)
T KOG0985|consen 1171 ELIFAYAKTNRLTELEEFI------A---GPNVANIQQVGDRCFEEKMYEAAKLLYSN----------VSNFAKLASTLV 1231 (1666)
T ss_pred HHHHHHHHhchHHHHHHHh------c---CCCchhHHHHhHHHhhhhhhHHHHHHHHH----------hhhHHHHHHHHH
Confidence 6667777778777765543 1 22333345566666667777776666643 223344455555
Q ss_pred HcCCHHHHHHHHHHHHH---------------------hCCC----ChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788 269 KFGDASRAQALLEHTLT---------------------SYPA----RVDVWGVYVDMLVKSDRVDLGRQVIQRAVT 319 (365)
Q Consensus 269 ~~g~~e~A~~~fe~~l~---------------------~~P~----~~~~w~~~~~~~~~~g~~~~Ar~~~eral~ 319 (365)
.+|++..|...-.++=. .+.- ..+-.-.++..|...|-+++.+.+++-++.
T Consensus 1232 ~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LG 1307 (1666)
T KOG0985|consen 1232 YLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLG 1307 (1666)
T ss_pred HHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhc
Confidence 55555544433332210 0111 122233445566667777777777777774
No 270
>KOG0545|consensus
Probab=96.30 E-value=0.14 Score=45.00 Aligned_cols=99 Identities=12% Similarity=0.071 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCCcc--------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17788 222 NIYLQCATLLLRLGQKDTARHILQRGLNN--------LPPAV--------HVTLITRFALAENKFGDASRAQALLEHTLT 285 (365)
Q Consensus 222 ~~~~~~a~~~~~~g~~~~A~~~l~ral~~--------~p~~~--------~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~ 285 (365)
.+...-|+-+++.|++.+|...|..|+.. .|..+ ...++.+|++|+...|++-++......+|.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 44555566677777888777777777654 24433 245778899999999999999999999999
Q ss_pred hCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788 286 SYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ 320 (365)
Q Consensus 286 ~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~ 320 (365)
.+|.+..+++..+......=+..+|+.-|..++.+
T Consensus 259 ~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 259 HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 99999999999999999888999999999999975
No 271
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=96.29 E-value=0.12 Score=40.98 Aligned_cols=41 Identities=12% Similarity=0.066 Sum_probs=19.9
Q ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy17788 241 RHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLE 281 (365)
Q Consensus 241 ~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe 281 (365)
+.+|.-+....-...+..++..+|.++...|++.+|..+|+
T Consensus 83 ~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 83 RELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444444333333344455555555555555555555554
No 272
>KOG0530|consensus
Probab=96.18 E-value=0.88 Score=40.61 Aligned_cols=200 Identities=14% Similarity=0.076 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCHH-HHH
Q psy17788 128 IEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYG-TKESLQECLHEAVRCND-ETKVYMNMMEIYAASAQIR-DLE 204 (365)
Q Consensus 128 ~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g-~~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g~~~-~A~ 204 (365)
-..|..+-+-++...| .+..+|.---.+....+ +..+-...+.+.+.-+| +..+|.+--.+....|+.. +-.
T Consensus 59 S~RAl~LT~d~i~lNp-----AnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rEL 133 (318)
T KOG0530|consen 59 SPRALQLTEDAIRLNP-----ANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFREL 133 (318)
T ss_pred CHHHHHHHHHHHHhCc-----ccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchH
Confidence 3456677777777777 66777865444433332 45555666777776666 4578877666666677666 667
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCC-----HHHHHHH
Q psy17788 205 STVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGD-----ASRAQAL 279 (365)
Q Consensus 205 ~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~-----~e~A~~~ 279 (365)
++.+.++... ..+..+|...--++...+.++.-+.+-.+.|+.+-.+..++-...|..... .|- .++-..+
T Consensus 134 ef~~~~l~~D---aKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~-~~~~~~~~le~El~y 209 (318)
T KOG0530|consen 134 EFTKLMLDDD---AKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNT-KGVISKAELERELNY 209 (318)
T ss_pred HHHHHHHhcc---ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEec-cCCccHHHHHHHHHH
Confidence 7788888766 778888888887888888888888888888776554444443332222221 222 2344566
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHh-cC--ChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHH
Q psy17788 280 LEHTLTSYPARVDVWGVYVDMLVK-SD--RVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLE 338 (365)
Q Consensus 280 fe~~l~~~P~~~~~w~~~~~~~~~-~g--~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e 338 (365)
....+...|++..+|..+.-++.. .| .......+.+.... . .+.....+..-.++++
T Consensus 210 t~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~-~-~~~~sP~lla~l~d~~ 269 (318)
T KOG0530|consen 210 TKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYL-Q-LPKRSPFLLAFLLDLY 269 (318)
T ss_pred HHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhh-c-cCCCChhHHHHHHHHH
Confidence 777788899999999998888875 44 23334444444432 1 2333444444444443
No 273
>KOG1585|consensus
Probab=96.17 E-value=0.84 Score=40.32 Aligned_cols=194 Identities=11% Similarity=0.046 Sum_probs=116.2
Q ss_pred HHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHH------HHHHHHHhCCHHHHHHHHHHHHHcC----CCH
Q psy17788 115 WVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTS------LLNLEHLYGTKESLQECLHEAVRCN----DET 184 (365)
Q Consensus 115 w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~------~~~l~~~~g~~~~a~~v~~ral~~~----~~~ 184 (365)
+.+-+..+....++++|...+.+|.+... .+-.+|.+ -+.+......+.++..+|++|...+ .+.
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~yE-----nnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspd 108 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGYE-----NNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPD 108 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHH-----hcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcc
Confidence 33345667778899999999999987544 33344432 2223344456778888888886543 122
Q ss_pred HHHHHH--HHHHHHhCCHHHHHHHHHHHHHHhcCC---CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh----cCCCcc
Q psy17788 185 KVYMNM--MEIYAASAQIRDLESTVKLLLKKAGQT---HSSVNIYLQCATLLLRLGQKDTARHILQRGLN----NLPPAV 255 (365)
Q Consensus 185 ~~~~~l--~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~----~~p~~~ 255 (365)
.+-..+ +.=....-+.+.|+++|++++..+-.. ..-...+-..+.++.+...+++|-..+.+-.. ......
T Consensus 109 tAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~ 188 (308)
T KOG1585|consen 109 TAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNS 188 (308)
T ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhccc
Confidence 222222 222345678999999999999876211 22244566677788888888888766665322 122111
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCChhHHHHHHHHHHhcCChHHHHHHH
Q psy17788 256 HVTLITRFALAENKFGDASRAQALLEHTLTS----YPARVDVWGVYVDMLVKSDRVDLGRQVI 314 (365)
Q Consensus 256 ~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~----~P~~~~~w~~~~~~~~~~g~~~~Ar~~~ 314 (365)
.-..++..+.++....++..|...|...-+. .|.+......++..|- .|+++.+.++.
T Consensus 189 ~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 189 QCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence 2344554455555666888888888765332 2333445555555543 47777766554
No 274
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.16 E-value=0.16 Score=43.15 Aligned_cols=95 Identities=17% Similarity=0.109 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q psy17788 223 IYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVT--LITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDM 300 (365)
Q Consensus 223 ~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~--~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~ 300 (365)
.-+.++..+...|++++|...++.++.. |.+.... +-.+++.+....|.++.|...+....... -....--.-||+
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~-t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDi 168 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQ-TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDI 168 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHcc-chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhH
Confidence 3455566677788888888888887743 3332222 33567888888888888888886653210 012223456788
Q ss_pred HHhcCChHHHHHHHHHHHh
Q psy17788 301 LVKSDRVDLGRQVIQRAVT 319 (365)
Q Consensus 301 ~~~~g~~~~Ar~~~eral~ 319 (365)
+...|+-++||..|++++.
T Consensus 169 ll~kg~k~~Ar~ay~kAl~ 187 (207)
T COG2976 169 LLAKGDKQEARAAYEKALE 187 (207)
T ss_pred HHHcCchHHHHHHHHHHHH
Confidence 8889999999999999987
No 275
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.16 E-value=0.059 Score=45.71 Aligned_cols=101 Identities=9% Similarity=0.164 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc------hHHH
Q psy17788 186 VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV------HVTL 259 (365)
Q Consensus 186 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~------~~~~ 259 (365)
.+..++++|.+.|+.+.|.+.|.++.........-..+++..+.+.+-.|++..+...+.++-....... .+.+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 5677788888888888888888887775432234456777788888888888888888877765533211 1233
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17788 260 ITRFALAENKFGDASRAQALLEHTLTSYP 288 (365)
Q Consensus 260 ~~~~a~~~~~~g~~e~A~~~fe~~l~~~P 288 (365)
+. |......|++..|-..|-.++..+.
T Consensus 118 ~~--gL~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 118 YE--GLANLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HH--HHHHHHhchHHHHHHHHHccCcCCC
Confidence 33 5556677888888888877766554
No 276
>KOG0890|consensus
Probab=96.14 E-value=3.1 Score=47.64 Aligned_cols=245 Identities=17% Similarity=0.184 Sum_probs=158.3
Q ss_pred CHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCc--cccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHH
Q psy17788 111 NSELWVKYMAYHLQATEIEKARSIARRALTVINIR--NEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYM 188 (365)
Q Consensus 111 ~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~--~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~~ 188 (365)
+++-|...+..--...++.+-+-.++|++-....+ -...-.++|..++++....|.++.|...+-.|.+.. .+.++.
T Consensus 1628 ~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~~~i~~ 1706 (2382)
T KOG0890|consen 1628 NSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR-LPEIVL 1706 (2382)
T ss_pred cchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cchHHH
Confidence 45778777766555555566566677766533211 122457899999999999999999999988887765 667899
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhcCC--------CCc------HHHHHHHHHHHHHcCCh--HHHHHHHHHHHhcCC
Q psy17788 189 NMMEIYAASAQIRDLESTVKLLLKKAGQT--------HSS------VNIYLQCATLLLRLGQK--DTARHILQRGLNNLP 252 (365)
Q Consensus 189 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~------~~~~~~~a~~~~~~g~~--~~A~~~l~ral~~~p 252 (365)
..|.++.+.|+...|..+++..+...-+. |.+ ..+.+.++.+....|++ .....+|..+++.+|
T Consensus 1707 E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ 1786 (2382)
T KOG0890|consen 1707 ERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILP 1786 (2382)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999664211 111 23566666777777765 456789999999998
Q ss_pred Ccc--hHHHHHHHHHHHH--------HcCCHHH---HHHHHHHHHH--------hCCCChhHHHHHHHHHHh---c----
Q psy17788 253 PAV--HVTLITRFALAEN--------KFGDASR---AQALLEHTLT--------SYPARVDVWGVYVDMLVK---S---- 304 (365)
Q Consensus 253 ~~~--~~~~~~~~a~~~~--------~~g~~e~---A~~~fe~~l~--------~~P~~~~~w~~~~~~~~~---~---- 304 (365)
... |..+-..+..++. +.|++.. |...|.+++. ..|.-..+|.-++..... .
T Consensus 1787 ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg~~~iyqsmPRllTLWLD~~t~~~~~ek~~r~e 1866 (2382)
T KOG0890|consen 1787 EWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYGNQHLYQSMPRLLTLWLDIGTHISSVEKAPRGE 1866 (2382)
T ss_pred cccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhcchhHHHhhhHHHHHHHhhcchhcccccCChhh
Confidence 432 2221111222222 3566666 4455556664 245556778887544322 2
Q ss_pred ---CChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHHHHh
Q psy17788 305 ---DRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLE--EQYGDAEAVENVKKEIEQYVRN 360 (365)
Q Consensus 305 ---g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e--~~~G~~~~a~~v~~kA~~~v~~ 360 (365)
++....-...++++. .+|+- .++..|-++- ..|-+.+.+.-+.+-..+.|.+
T Consensus 1867 i~s~~~~~in~~i~~~~~-~lp~Y---~f~ta~sQLlSRicH~~~dV~~vl~~II~~l~~~ 1923 (2382)
T KOG0890|consen 1867 IVSKNLKLINSLIEEALE-HLPTY---QFYTAYSQLLSRICHPNQDVARVLKHIIAKLVLA 1923 (2382)
T ss_pred hhhhhHHHHHHHHHHHHH-hCcch---HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHh
Confidence 234445566677776 55543 5666666653 3466777776666666665554
No 277
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=96.08 E-value=0.01 Score=34.57 Aligned_cols=30 Identities=30% Similarity=0.464 Sum_probs=21.8
Q ss_pred CHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHH
Q psy17788 127 EIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEH 162 (365)
Q Consensus 127 ~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~ 162 (365)
+++.||.+|+|.+..+|. ...|+.|+.++.
T Consensus 2 E~dRAR~IyeR~v~~hp~------~k~WikyAkFEe 31 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE------VKNWIKYAKFEE 31 (32)
T ss_pred hHHHHHHHHHHHHHhCCC------chHHHHHHHhhc
Confidence 467788888888877662 577888877763
No 278
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=96.04 E-value=0.013 Score=34.14 Aligned_cols=28 Identities=25% Similarity=0.320 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHH
Q psy17788 307 VDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLE 338 (365)
Q Consensus 307 ~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e 338 (365)
+++||.+|+|.+.. . .....|.+|..||
T Consensus 3 ~dRAR~IyeR~v~~--h--p~~k~WikyAkFE 30 (32)
T PF02184_consen 3 FDRARSIYERFVLV--H--PEVKNWIKYAKFE 30 (32)
T ss_pred HHHHHHHHHHHHHh--C--CCchHHHHHHHhh
Confidence 44555555555542 1 1233455555554
No 279
>KOG0545|consensus
Probab=96.03 E-value=0.21 Score=43.95 Aligned_cols=92 Identities=17% Similarity=0.179 Sum_probs=53.2
Q ss_pred HHHHHhCCHHHHHHHHHHHHHcC--------C-----------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCC
Q psy17788 159 NLEHLYGTKESLQECLHEAVRCN--------D-----------ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHS 219 (365)
Q Consensus 159 ~l~~~~g~~~~a~~v~~ral~~~--------~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 219 (365)
|-....|.+.+|...|..|+..- | ...++.++.+++...|++-++++.....++.. |.
T Consensus 186 N~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~---~~ 262 (329)
T KOG0545|consen 186 NRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHH---PG 262 (329)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC---Cc
Confidence 33344566666666666665321 2 12244555555556666666666666666665 66
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q psy17788 220 SVNIYLQCATLLLRLGQKDTARHILQRGLNNLPP 253 (365)
Q Consensus 220 ~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~ 253 (365)
+.++++..|......=+..+|..=|..+|...|.
T Consensus 263 nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 263 NVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 6666666666666555666666666666666655
No 280
>KOG0376|consensus
Probab=96.01 E-value=0.011 Score=56.52 Aligned_cols=102 Identities=13% Similarity=0.009 Sum_probs=70.8
Q ss_pred HHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHH
Q psy17788 195 AASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDAS 274 (365)
Q Consensus 195 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e 274 (365)
...+.++.|+.+|.+++++. |+++..+-..+..+++.+++..|..=..+|++..|.. +..|+.-|......+.+.
T Consensus 15 l~~~~fd~avdlysKaI~ld---pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~--~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIELD---PNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY--IKAYVRRGTAVMALGEFK 89 (476)
T ss_pred cccchHHHHHHHHHHHHhcC---CcceeeechhhhhheeechhhhHHHHHHhhhhcCchh--hheeeeccHHHHhHHHHH
Confidence 34556777777777777776 6666677777777777777777777777777777663 555566667777777777
Q ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHH
Q psy17788 275 RAQALLEHTLTSYPARVDVWGVYVDML 301 (365)
Q Consensus 275 ~A~~~fe~~l~~~P~~~~~w~~~~~~~ 301 (365)
+|...|+......|+++++-..+-.|.
T Consensus 90 ~A~~~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 90 KALLDLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence 777777777777777777766665553
No 281
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.91 E-value=1.5 Score=41.02 Aligned_cols=121 Identities=15% Similarity=0.167 Sum_probs=91.2
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC----
Q psy17788 218 HSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV--HVTLITRFALAENKFGDASRAQALLEHTLTS-YPAR---- 290 (365)
Q Consensus 218 ~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~--~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~-~P~~---- 290 (365)
......|+.++.+..+.|.++.|...+.++....+... ...+...++.+....|+...|...++..+.. ....
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence 56778999999999999999999999999987652211 2345577799999999999999999888872 1111
Q ss_pred -----------------------------hhHHHHHHHHHHhc------CChHHHHHHHHHHHhCCCCCCCcHHHHHHHH
Q psy17788 291 -----------------------------VDVWGVYVDMLVKS------DRVDLGRQVIQRAVTQKLPPKKLKPLYMKWL 335 (365)
Q Consensus 291 -----------------------------~~~w~~~~~~~~~~------g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l 335 (365)
..++..++...... +..+.+...|..++.. .+ .....|..|+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~--~~-~~~k~~~~~a 299 (352)
T PF02259_consen 223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL--DP-SWEKAWHSWA 299 (352)
T ss_pred cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh--Ch-hHHHHHHHHH
Confidence 23456666666666 8899999999999974 33 3445788888
Q ss_pred HHHHhc
Q psy17788 336 KLEEQY 341 (365)
Q Consensus 336 ~~e~~~ 341 (365)
.+....
T Consensus 300 ~~~~~~ 305 (352)
T PF02259_consen 300 LFNDKL 305 (352)
T ss_pred HHHHHH
Confidence 876554
No 282
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.81 E-value=0.34 Score=41.06 Aligned_cols=100 Identities=8% Similarity=0.048 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHH---H-
Q psy17788 113 ELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVY---M- 188 (365)
Q Consensus 113 ~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~---~- 188 (365)
.+|..++.+|.+.|+++.|.+.|.++..... ......++++.++.+..-++++..+.....++-.......-| .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~--~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCT--SPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC--CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 5678899999999999999999999877322 112567889999999999999999988888886544321111 1
Q ss_pred ---HHHHHHHHhCCHHHHHHHHHHHHHHh
Q psy17788 189 ---NMMEIYAASAQIRDLESTVKLLLKKA 214 (365)
Q Consensus 189 ---~l~~~~~~~g~~~~A~~~~~~al~~~ 214 (365)
.-+-.+...++|..|-++|-.++..|
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 11222334566666666665555444
No 283
>PF13041 PPR_2: PPR repeat family
Probab=95.78 E-value=0.042 Score=35.81 Aligned_cols=48 Identities=13% Similarity=0.138 Sum_probs=34.4
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q psy17788 182 DETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLL 231 (365)
Q Consensus 182 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~ 231 (365)
|+...|..++..|.+.|++++|.++|+++.+... +.+...+..+...+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~--~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGI--KPDSYTYNILINGL 48 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHH
Confidence 4566788888888888888888888888886632 55666666665544
No 284
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.65 E-value=0.21 Score=42.41 Aligned_cols=94 Identities=17% Similarity=0.111 Sum_probs=47.1
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHH
Q psy17788 188 MNMMEIYAASAQIRDLESTVKLLLKKAGQTHSS----VNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRF 263 (365)
Q Consensus 188 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~ 263 (365)
+.++..+...|++++|...++.++.. +.+ .-+-.+++.+....|++++|...+..... +... ..+.-.-
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~-~~~~elr 165 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWA-AIVAELR 165 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHH-HHHHHHh
Confidence 34455556666666666666655543 222 22344555666666666666655543221 1100 1111122
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17788 264 ALAENKFGDASRAQALLEHTLTSYP 288 (365)
Q Consensus 264 a~~~~~~g~~e~A~~~fe~~l~~~P 288 (365)
|.++...|+.+.|+..|++++..++
T Consensus 166 GDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 166 GDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred hhHHHHcCchHHHHHHHHHHHHccC
Confidence 5566666666666666666666553
No 285
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.62 E-value=0.022 Score=33.62 Aligned_cols=26 Identities=19% Similarity=0.422 Sum_probs=10.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHh
Q psy17788 224 YLQCATLLLRLGQKDTARHILQRGLN 249 (365)
Q Consensus 224 ~~~~a~~~~~~g~~~~A~~~l~ral~ 249 (365)
|+.+|.++...|++++|...|+++++
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33333444444444444444444333
No 286
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.52 E-value=0.031 Score=32.90 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17788 259 LITRFALAENKFGDASRAQALLEHTLTSYP 288 (365)
Q Consensus 259 ~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P 288 (365)
++..+|.++...|+++.|...|+++++.+|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455566666667777777777777666666
No 287
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.50 E-value=3.4 Score=42.31 Aligned_cols=182 Identities=13% Similarity=0.124 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHhhccCccccchHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHhCCH
Q psy17788 129 EKARSIARRALTVINIRNEEDRLNVWTSLLNLEH-LYGTKESLQECLHEAVRCNDE-------TKVYMNMMEIYAASAQI 200 (365)
Q Consensus 129 e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~-~~g~~~~a~~v~~ral~~~~~-------~~~~~~l~~~~~~~g~~ 200 (365)
..|+.+++-+++..+...+ ....+.+.|+.++. ...+.+.|+..+++++..+.. ..+-..++.++.+.+..
T Consensus 38 ~~ai~CL~~~~~~~~l~p~-~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPR-QEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHhccCCCCHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 4466777777643333222 23566777887765 445889999999999777642 11334557888888876
Q ss_pred HHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHH-----HHcCChHHHHHHHHHHHhcC--CCcchHHHHHHH--HHHHHHc
Q psy17788 201 RDLESTVKLLLKKAGQTHS-SVNIYLQCATLL-----LRLGQKDTARHILQRGLNNL--PPAVHVTLITRF--ALAENKF 270 (365)
Q Consensus 201 ~~A~~~~~~al~~~~~~~~-~~~~~~~~a~~~-----~~~g~~~~A~~~l~ral~~~--p~~~~~~~~~~~--a~~~~~~ 270 (365)
. |....++.+... .. ....|...-+++ ...+++..|...++...... +.++.+.++..+ +.+....
T Consensus 117 ~-a~~~l~~~I~~~---~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~ 192 (608)
T PF10345_consen 117 A-ALKNLDKAIEDS---ETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRR 192 (608)
T ss_pred H-HHHHHHHHHHHH---hccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcC
Confidence 6 999999998876 22 122333333332 23478999999998887654 455555544443 3344566
Q ss_pred CCHHHHHHHHHHHHHh----------CCCChhHHHHHHHHH--HhcCChHHHHHHHH
Q psy17788 271 GDASRAQALLEHTLTS----------YPARVDVWGVYVDML--VKSDRVDLGRQVIQ 315 (365)
Q Consensus 271 g~~e~A~~~fe~~l~~----------~P~~~~~w~~~~~~~--~~~g~~~~Ar~~~e 315 (365)
+.++.+....+++... .|....+|....++. +..|++..+.....
T Consensus 193 ~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~ 249 (608)
T PF10345_consen 193 GSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLK 249 (608)
T ss_pred CCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777787777777432 123466787777754 56677666655433
No 288
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.50 E-value=0.034 Score=32.36 Aligned_cols=28 Identities=11% Similarity=0.145 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q psy17788 187 YMNMMEIYAASAQIRDLESTVKLLLKKA 214 (365)
Q Consensus 187 ~~~l~~~~~~~g~~~~A~~~~~~al~~~ 214 (365)
++.++.++.+.|++++|+..|+++++.+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 4555666666666666666666666665
No 289
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=95.41 E-value=1.5 Score=37.62 Aligned_cols=88 Identities=14% Similarity=0.112 Sum_probs=59.3
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--cchHHH
Q psy17788 182 DETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPP--AVHVTL 259 (365)
Q Consensus 182 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~--~~~~~~ 259 (365)
++..+|+++.. .+.+.|+..|-.+-... .-.++.+...+|.+|. ..+.++++.+|-++|...+. ..+..+
T Consensus 109 dP~llYy~Wsr-----~~d~~A~~~fL~~E~~~--~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~ei 180 (203)
T PF11207_consen 109 DPYLLYYHWSR-----FGDQEALRRFLQLEGTP--ELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEI 180 (203)
T ss_pred CccHHHHHhhc-----cCcHHHHHHHHHHcCCC--CCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHH
Confidence 34445555443 23456666666554432 1456888888888887 45678888888888887543 445778
Q ss_pred HHHHHHHHHHcCCHHHHH
Q psy17788 260 ITRFALAENKFGDASRAQ 277 (365)
Q Consensus 260 ~~~~a~~~~~~g~~e~A~ 277 (365)
+..++.++.+.|+++.|.
T Consensus 181 l~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 181 LKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHhcchhhhh
Confidence 888888888888888763
No 290
>KOG0551|consensus
Probab=95.36 E-value=0.1 Score=47.83 Aligned_cols=93 Identities=20% Similarity=0.123 Sum_probs=48.4
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Q psy17788 191 MEIYAASAQIRDLESTVKLLLKKAGQT-HSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENK 269 (365)
Q Consensus 191 ~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~ 269 (365)
++-|.+..++..|+..|.+.++..-.+ .-+..+|.+.+.+.+-.|++..|+.=..+++...|. |+..+.+-|.++..
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~--h~Ka~~R~Akc~~e 165 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPT--HLKAYIRGAKCLLE 165 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcc--hhhhhhhhhHHHHH
Confidence 444555555555555555555543111 112334555555555555555555555555555555 35555555555555
Q ss_pred cCCHHHHHHHHHHHHH
Q psy17788 270 FGDASRAQALLEHTLT 285 (365)
Q Consensus 270 ~g~~e~A~~~fe~~l~ 285 (365)
+..+..|..+.+..+.
T Consensus 166 Le~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 166 LERFAEAVNWCEEGLQ 181 (390)
T ss_pred HHHHHHHHHHHhhhhh
Confidence 5555555555555443
No 291
>KOG2422|consensus
Probab=95.28 E-value=0.51 Score=46.44 Aligned_cols=147 Identities=14% Similarity=0.113 Sum_probs=92.7
Q ss_pred cCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhh---------ccCcc-------ccch---HHHHHHHHHHHHHhCCH
Q psy17788 107 GQPNNSELWVKYMAYHLQATEIEKARSIARRALTV---------INIRN-------EEDR---LNVWTSLLNLEHLYGTK 167 (365)
Q Consensus 107 ~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~---------~p~~~-------~~~~---~~~w~~~~~l~~~~g~~ 167 (365)
.+|.+....++.+.+...+|+.+-|..+.+|||=. +|+.. ..++ .-+.+.|+....+.|.+
T Consensus 279 ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~ 358 (665)
T KOG2422|consen 279 SSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCW 358 (665)
T ss_pred cCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCCh
Confidence 35777889999999999999988877777776642 11110 0011 22233455555677888
Q ss_pred HHHHHHHHHHHHcCCC--HHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHHcCC---hHHH
Q psy17788 168 ESLQECLHEAVRCNDE--TKVYMNMMEIYA-ASAQIRDLESTVKLLLKKAGQ-THSSVNIYLQCATLLLRLGQ---KDTA 240 (365)
Q Consensus 168 ~~a~~v~~ral~~~~~--~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~a~~~~~~g~---~~~A 240 (365)
..|.++.+-.+...|. +.....++++|. +..+|+=.+++++..-..... .-++...-..+|.+|..... -..|
T Consensus 359 rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa 438 (665)
T KOG2422|consen 359 RTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSA 438 (665)
T ss_pred HHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHH
Confidence 8888888888888775 334455566664 456677777777766322100 02233444566677776655 4567
Q ss_pred HHHHHHHHhcCCC
Q psy17788 241 RHILQRGLNNLPP 253 (365)
Q Consensus 241 ~~~l~ral~~~p~ 253 (365)
+..+.+|+..+|.
T Consensus 439 ~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 439 LNALLQALKHHPL 451 (665)
T ss_pred HHHHHHHHHhCcH
Confidence 7888888888776
No 292
>KOG2422|consensus
Probab=95.21 E-value=1.1 Score=44.33 Aligned_cols=164 Identities=13% Similarity=0.085 Sum_probs=103.4
Q ss_pred HhCCHHHHHHHHHHHHHHhc---------CCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCC--------
Q psy17788 196 ASAQIRDLESTVKLLLKKAG---------QTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNN-----LPP-------- 253 (365)
Q Consensus 196 ~~g~~~~A~~~~~~al~~~~---------~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~-----~p~-------- 253 (365)
.++.++++...|.-++.... .+|-+....+.++.+...+|+.+.|..+.+|+|=. .|.
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 34456666666666665532 13556677777777777777776666665555432 111
Q ss_pred --------c-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChhHHHHHHHHHH-hcCChHHHHHHHHHHHh-CC
Q psy17788 254 --------A-VHVTLITRFALAENKFGDASRAQALLEHTLTSYPA-RVDVWGVYVDMLV-KSDRVDLGRQVIQRAVT-QK 321 (365)
Q Consensus 254 --------~-~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~-~~~~w~~~~~~~~-~~g~~~~Ar~~~eral~-~~ 321 (365)
+ .-..++.++.+...+.|-+.-|..+..-++..+|. ++-....++|.|. +..++.-.+.+++..-. .+
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~ 409 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNK 409 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Confidence 1 01234556667777889999999999999999998 8888888888774 56677778888776622 11
Q ss_pred --CCCCCcHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHhh
Q psy17788 322 --LPPKKLKPLYMKWLKLEEQYG---DAEAVENVKKEIEQYVRNS 361 (365)
Q Consensus 322 --l~~~~~~~~~~~~l~~e~~~G---~~~~a~~v~~kA~~~v~~~ 361 (365)
.-|+ ... -...+.|..... +.+++...+.+|+...+..
T Consensus 410 l~~~PN-~~y-S~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~v 452 (665)
T KOG2422|consen 410 LSQLPN-FGY-SLALARFFLRKNEEDDRQSALNALLQALKHHPLV 452 (665)
T ss_pred HhhcCC-chH-HHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcHH
Confidence 1122 222 222233333322 3678888899998877643
No 293
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.17 E-value=1.5 Score=36.20 Aligned_cols=75 Identities=19% Similarity=0.074 Sum_probs=52.2
Q ss_pred HHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCH
Q psy17788 194 YAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDA 273 (365)
Q Consensus 194 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~ 273 (365)
-.+.++.+.+..++..+--.- |..+.+-+.-+.++...|++.+|+.+|+.+....|..+....+. +.|++..|++
T Consensus 20 al~~~~~~D~e~lL~ALrvLR---P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALl--A~CL~~~~D~ 94 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVLR---PEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALL--ALCLYALGDP 94 (160)
T ss_pred HHccCChHHHHHHHHHHHHhC---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHH--HHHHHHcCCh
Confidence 345567777777777666655 77777777778888888888888888887776666665555444 5666666654
No 294
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.09 E-value=0.054 Score=32.62 Aligned_cols=25 Identities=16% Similarity=0.133 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Q psy17788 187 YMNMMEIYAASAQIRDLESTVKLLL 211 (365)
Q Consensus 187 ~~~l~~~~~~~g~~~~A~~~~~~al 211 (365)
|..++.+|.+.|++++|+++|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555666666666666666666644
No 295
>KOG3824|consensus
Probab=95.01 E-value=0.2 Score=45.52 Aligned_cols=63 Identities=13% Similarity=0.167 Sum_probs=34.5
Q ss_pred HHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHH
Q psy17788 232 LRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGV 296 (365)
Q Consensus 232 ~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~ 296 (365)
.+.|+.++|..+|..|+...|.+ ..++..||.+...+++.-.|-.+|-++|...|.+..+...
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~--p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTN--PQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCC--HHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 34455555555555555555553 3445555555555555555555555555555555544443
No 296
>KOG0376|consensus
Probab=94.86 E-value=0.042 Score=52.67 Aligned_cols=89 Identities=10% Similarity=0.083 Sum_probs=69.0
Q ss_pred CCHHHHHHHHHHHHHcCCCHHHHHH-HHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHH
Q psy17788 165 GTKESLQECLHEAVRCNDETKVYMN-MMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHI 243 (365)
Q Consensus 165 g~~~~a~~v~~ral~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 243 (365)
+.++.|...|-+||..+|+..+|.. -+..+.+.+.+..|+.=+.++++.. |...+.|+.-|.++...+.+.+|+..
T Consensus 18 ~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d---P~~~K~Y~rrg~a~m~l~~~~~A~~~ 94 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD---PTYIKAYVRRGTAVMALGEFKKALLD 94 (476)
T ss_pred chHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC---chhhheeeeccHHHHhHHHHHHHHHH
Confidence 4677888888888888886665533 3677777888888888888888877 77888888888888888888888888
Q ss_pred HHHHHhcCCCcch
Q psy17788 244 LQRGLNNLPPAVH 256 (365)
Q Consensus 244 l~ral~~~p~~~~ 256 (365)
|+......|+++.
T Consensus 95 l~~~~~l~Pnd~~ 107 (476)
T KOG0376|consen 95 LEKVKKLAPNDPD 107 (476)
T ss_pred HHHhhhcCcCcHH
Confidence 8888888888644
No 297
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.85 E-value=0.056 Score=32.57 Aligned_cols=27 Identities=22% Similarity=0.050 Sum_probs=21.2
Q ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHh
Q psy17788 114 LWVKYMAYHLQATEIEKARSIARRALT 140 (365)
Q Consensus 114 ~w~~~~~~~~~~~~~e~A~~~~~raL~ 140 (365)
+|..++.++.+.|++++|+.+|+++|.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788888888888888888888665
No 298
>PF12854 PPR_1: PPR repeat
Probab=94.72 E-value=0.066 Score=31.87 Aligned_cols=30 Identities=7% Similarity=0.243 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy17788 181 NDETKVYMNMMEIYAASAQIRDLESTVKLL 210 (365)
Q Consensus 181 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 210 (365)
.|+...|..++..|.+.|+.++|.++|++|
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 466677888888888888888888888765
No 299
>KOG1308|consensus
Probab=94.63 E-value=0.032 Score=51.22 Aligned_cols=117 Identities=12% Similarity=0.079 Sum_probs=74.9
Q ss_pred HhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHH
Q psy17788 196 ASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASR 275 (365)
Q Consensus 196 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~ 275 (365)
..|.++.|+++|..++.+. |.+..++...+.+++..++...|+.=+..|+.++|....-.-+. +..+.-+|++++
T Consensus 126 n~G~~~~ai~~~t~ai~ln---p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfr--g~A~rllg~~e~ 200 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN---PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFR--GYAERLLGNWEE 200 (377)
T ss_pred cCcchhhhhcccccccccC---CchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchh--hHHHHHhhchHH
Confidence 3466777777777777776 77777777777777777777777777777777777643322223 555666778888
Q ss_pred HHHHHHHHHHhCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788 276 AQALLEHTLTSYPA-RVDVWGVYVDMLVKSDRVDLGRQVIQRAVT 319 (365)
Q Consensus 276 A~~~fe~~l~~~P~-~~~~w~~~~~~~~~~g~~~~Ar~~~eral~ 319 (365)
|...|..+++++-+ ....|.. .+.-..+.+.+-+..++|...
T Consensus 201 aa~dl~~a~kld~dE~~~a~lK--eV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 201 AAHDLALACKLDYDEANSATLK--EVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHHHhccccHHHHHHHH--HhccchhhhhhchhHHHHHHH
Confidence 88888777766433 2333332 222333445555556666554
No 300
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.57 E-value=0.37 Score=35.85 Aligned_cols=76 Identities=14% Similarity=0.110 Sum_probs=50.2
Q ss_pred hHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy17788 98 PDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHE 176 (365)
Q Consensus 98 ~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~r 176 (365)
+..+++.+..+|++..+.+.++..++..|+++.|...+-.++...+.- +....-..++.+....|.-+....-|.|
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~---~~~~ar~~ll~~f~~lg~~~plv~~~RR 83 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY---EDDAARKRLLDIFELLGPGDPLVSEYRR 83 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC---CCCHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc---cccHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 456888899999999999999999999999999999888888866532 2234445555555555554434333333
No 301
>KOG1538|consensus
Probab=94.41 E-value=0.97 Score=45.20 Aligned_cols=110 Identities=20% Similarity=0.224 Sum_probs=62.2
Q ss_pred HHHHHHhCCHHHHHHHH----------HHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHH
Q psy17788 191 MEIYAASAQIRDLESTV----------KLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLI 260 (365)
Q Consensus 191 ~~~~~~~g~~~~A~~~~----------~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~ 260 (365)
+.++...|..++|+.+. +-+-+.. ....+....++..+.+...+--|-++|+++= + .
T Consensus 710 AEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld---~~ere~l~~~a~ylk~l~~~gLAaeIF~k~g----D------~ 776 (1081)
T KOG1538|consen 710 AEMLISAGEHVKAIEICGDHGWVDMLIDIARKLD---KAEREPLLLCATYLKKLDSPGLAAEIFLKMG----D------L 776 (1081)
T ss_pred HHHhhcccchhhhhhhhhcccHHHHHHHHHhhcc---hhhhhHHHHHHHHHhhccccchHHHHHHHhc----c------H
Confidence 45556667777766542 1111222 3445556666666666666666666665531 1 1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHhcCChHHHHHHHHHH
Q psy17788 261 TRFALAENKFGDASRAQALLEHTLTSYPAR-VDVWGVYVDMLVKSDRVDLGRQVIQRA 317 (365)
Q Consensus 261 ~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~-~~~w~~~~~~~~~~g~~~~Ar~~~era 317 (365)
....+++...+++++|..+-++. |.. .+++..|++.+....++++|.+.|-+|
T Consensus 777 ksiVqlHve~~~W~eAFalAe~h----Pe~~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 777 KSLVQLHVETQRWDEAFALAEKH----PEFKDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred HHHhhheeecccchHhHhhhhhC----ccccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 23355666778888887776544 543 456777776666665555555555544
No 302
>PRK10941 hypothetical protein; Provisional
Probab=94.31 E-value=0.72 Score=41.83 Aligned_cols=65 Identities=12% Similarity=0.003 Sum_probs=34.7
Q ss_pred HHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHH
Q psy17788 193 IYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLI 260 (365)
Q Consensus 193 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~ 260 (365)
+|.+.++++.|..+.++++... |.++.-|...|.+|.+.|.+..|+.=++.-++..|.++.+.++
T Consensus 190 ~~~~~~~~~~AL~~~e~ll~l~---P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 190 ALMEEKQMELALRASEALLQFD---PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHcCcHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 4445555555555555555554 5555555555555555555555555555555555555444433
No 303
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.08 E-value=3.7 Score=40.12 Aligned_cols=53 Identities=6% Similarity=0.003 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788 259 LITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVT 319 (365)
Q Consensus 259 ~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~ 319 (365)
.|.++|..-...|+++-|...|+++ .-|..+.-+|.-.|+.+.-+++-+.|..
T Consensus 349 ~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 349 KWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 4455555555555555555444443 1122333333444555444444444443
No 304
>KOG0551|consensus
Probab=94.06 E-value=0.28 Score=45.10 Aligned_cols=96 Identities=15% Similarity=0.088 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcch--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHH
Q psy17788 222 NIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVH--VTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVD 299 (365)
Q Consensus 222 ~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~--~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~ 299 (365)
.-+-.-|..|++.+++..|+..|..+|.....++. +.+|.+-|.++...|++..|+.-..+++...|.+..+++.=+.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 33445578889999999999999999987654443 5578888889999999999999999999999999999988888
Q ss_pred HHHhcCChHHHHHHHHHH
Q psy17788 300 MLVKSDRVDLGRQVIQRA 317 (365)
Q Consensus 300 ~~~~~g~~~~Ar~~~era 317 (365)
|+........|.+.-+..
T Consensus 162 c~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 888777755555544433
No 305
>KOG3824|consensus
Probab=94.01 E-value=0.17 Score=46.02 Aligned_cols=60 Identities=10% Similarity=0.041 Sum_probs=44.2
Q ss_pred HHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc
Q psy17788 193 IYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV 255 (365)
Q Consensus 193 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~ 255 (365)
-..+.|+.++|..+|+-++... |.++++.+.+|.|....+++-+|-.+|-+||...|.+.
T Consensus 125 ~~~~~Gk~ekA~~lfeHAlala---P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ns 184 (472)
T KOG3824|consen 125 RSRKDGKLEKAMTLFEHALALA---PTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNS 184 (472)
T ss_pred HHHhccchHHHHHHHHHHHhcC---CCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCch
Confidence 3456677777777777777777 77777777777777777777777777777777777643
No 306
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=93.86 E-value=0.11 Score=28.99 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=11.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy17788 224 YLQCATLLLRLGQKDTARHILQRGLNN 250 (365)
Q Consensus 224 ~~~~a~~~~~~g~~~~A~~~l~ral~~ 250 (365)
|..+|.++...|+++.|...|++++..
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 344444444444444444444444433
No 307
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.84 E-value=1.8 Score=41.68 Aligned_cols=124 Identities=15% Similarity=0.101 Sum_probs=74.5
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHhcCCCCcH-----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHH
Q psy17788 191 MEIYAASAQIRDLESTVKLLLKKAGQTHSSV-----NIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFAL 265 (365)
Q Consensus 191 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~ 265 (365)
+-++.+++++.+|.++|.+..+.. ..++ .++.+...-.+-.++.+.-...+...-+..|+.+++.+.. |.
T Consensus 13 gf~Lqkq~~~~esEkifskI~~e~---~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~--~L 87 (549)
T PF07079_consen 13 GFILQKQKKFQESEKIFSKIYDEK---ESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFK--AL 87 (549)
T ss_pred hHHHHHHhhhhHHHHHHHHHHHHh---hcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHH--HH
Confidence 445667788888888888887764 2222 2222222222223455544444444444567665555444 66
Q ss_pred HHHHcCCHHHHHHHHHHHHHh----CC---------CChhHHHH--HHHHHHhcCChHHHHHHHHHHHh
Q psy17788 266 AENKFGDASRAQALLEHTLTS----YP---------ARVDVWGV--YVDMLVKSDRVDLGRQVIQRAVT 319 (365)
Q Consensus 266 ~~~~~g~~e~A~~~fe~~l~~----~P---------~~~~~w~~--~~~~~~~~g~~~~Ar~~~eral~ 319 (365)
..++.|.+..|...+-.--.. -| .-.+.|.. .++++++.|.+.++|.+++|++.
T Consensus 88 ~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~ 156 (549)
T PF07079_consen 88 VAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIE 156 (549)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 677778888777666443322 11 11344543 35788999999999999999987
No 308
>KOG1538|consensus
Probab=93.81 E-value=5.3 Score=40.25 Aligned_cols=53 Identities=15% Similarity=0.229 Sum_probs=36.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy17788 296 VYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEI 354 (365)
Q Consensus 296 ~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA 354 (365)
..+++.+..+++++|-.+-++. |.....++.-|.+|......+++|...|.||
T Consensus 778 siVqlHve~~~W~eAFalAe~h------Pe~~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 778 SLVQLHVETQRWDEAFALAEKH------PEFKDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred HHhhheeecccchHhHhhhhhC------ccccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 3456667788999888877765 3344456777777766666777777776665
No 309
>KOG4507|consensus
Probab=93.70 E-value=0.47 Score=46.84 Aligned_cols=62 Identities=15% Similarity=0.082 Sum_probs=25.6
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q psy17788 189 NMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPP 253 (365)
Q Consensus 189 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~ 253 (365)
.++++..+.|-.-.|-.++.+++... ...|-.++.+|.+++...+.+.|++.|..|+...|+
T Consensus 647 ~la~~~~~~~~~~da~~~l~q~l~~~---~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~ 708 (886)
T KOG4507|consen 647 NLANLLIHYGLHLDATKLLLQALAIN---SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTK 708 (886)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHhhc---ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCC
Confidence 33444444444444444444444333 333334444444444444444444444444444443
No 310
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=93.39 E-value=1.4 Score=38.54 Aligned_cols=66 Identities=12% Similarity=0.148 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhCCHHHHHH-------HHHHHHHHhcC---CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q psy17788 186 VYMNMMEIYAASAQIRDLES-------TVKLLLKKAGQ---THSSVNIYLQCATLLLRLGQKDTARHILQRGLNNL 251 (365)
Q Consensus 186 ~~~~l~~~~~~~g~~~~A~~-------~~~~al~~~~~---~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~ 251 (365)
++++++-+|...|+.+.... .|.+++..... .-+...+.+.+|.+..+.|++++|...|.+++..-
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 44555666666665443333 33333333211 01234566777777777777777777777777653
No 311
>KOG0890|consensus
Probab=93.38 E-value=12 Score=43.27 Aligned_cols=184 Identities=15% Similarity=0.116 Sum_probs=119.2
Q ss_pred chHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---cCC-----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCc
Q psy17788 149 DRLNVWTSLLNLEHLYGTKESLQECLHEAVR---CND-----ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSS 220 (365)
Q Consensus 149 ~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~---~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 220 (365)
...+-|...+..-..+.....-+-.++|++- .+| -..+|+.+|.+-+..|.++.|....-.+.+. .-
T Consensus 1627 ~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~-----r~ 1701 (2382)
T KOG0890|consen 1627 NNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKES-----RL 1701 (2382)
T ss_pred ccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc-----cc
Confidence 4456677666544333333333334444432 122 2469999999999999999999988877764 37
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CC----------cch----HHHHHHHHHHHHHcCCH--HHHHHHHHHH
Q psy17788 221 VNIYLQCATLLLRLGQKDTARHILQRGLNNL-PP----------AVH----VTLITRFALAENKFGDA--SRAQALLEHT 283 (365)
Q Consensus 221 ~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~-p~----------~~~----~~~~~~~a~~~~~~g~~--e~A~~~fe~~ 283 (365)
+.+....|.++-..|+...|..+++..+... |+ ... -.+...++.+....|+. ..-..+|..+
T Consensus 1702 ~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~ 1781 (2382)
T KOG0890|consen 1702 PEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDA 1781 (2382)
T ss_pred chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 8999999999999999999999999999542 32 111 12344556666666764 4678899999
Q ss_pred HHhCCCChhHHHHHHHHH------------HhcCChHH---HHHHHHHHHhCCC--CCCCcHHHHHHHHHH
Q psy17788 284 LTSYPARVDVWGVYVDML------------VKSDRVDL---GRQVIQRAVTQKL--PPKKLKPLYMKWLKL 337 (365)
Q Consensus 284 l~~~P~~~~~w~~~~~~~------------~~~g~~~~---Ar~~~eral~~~l--~~~~~~~~~~~~l~~ 337 (365)
+..+|...+-++.+|..| .+.|++.. +...|.+++.-+- --..+..+...|+++
T Consensus 1782 ~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg~~~iyqsmPRllTLWLD~ 1852 (2382)
T KOG0890|consen 1782 KAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYGNQHLYQSMPRLLTLWLDI 1852 (2382)
T ss_pred HHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhcchhHHHhhhHHHHHHHhh
Confidence 999996544444333222 23566666 5556678876110 001344566666664
No 312
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.35 E-value=8.8 Score=37.72 Aligned_cols=160 Identities=12% Similarity=0.094 Sum_probs=113.2
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q psy17788 154 WTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLR 233 (365)
Q Consensus 154 w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~ 233 (365)
..+++.+....-...-+..+..|.+.+..+...+..++++|... ..++.-.++++.++.. -++...-..++..|..
T Consensus 69 l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d---fnDvv~~ReLa~~yEk 144 (711)
T COG1747 69 LVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYD---FNDVVIGRELADKYEK 144 (711)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc---chhHHHHHHHHHHHHH
Confidence 44555555444456778899999999999999999999999988 5678889999999886 6677777777777777
Q ss_pred cCChHHHHHHHHHHHhcC-CCcchH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChhHHHHHH-HHHHhcCCh
Q psy17788 234 LGQKDTARHILQRGLNNL-PPAVHV---TLITRFALAENKFGDASRAQALLEHTLTSYPA-RVDVWGVYV-DMLVKSDRV 307 (365)
Q Consensus 234 ~g~~~~A~~~l~ral~~~-p~~~~~---~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~-~~~~w~~~~-~~~~~~g~~ 307 (365)
++...+..+|.+|+... |..... .+|.++.. .--.+.+.-..+..++-+.+.. ...+...+. .-|....++
T Consensus 145 -ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~--~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~ 221 (711)
T COG1747 145 -IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPE--LIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENW 221 (711)
T ss_pred -hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHH--hccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCH
Confidence 88899999999998764 433221 23433321 1234566666655555444433 345555555 556677899
Q ss_pred HHHHHHHHHHHhC
Q psy17788 308 DLGRQVIQRAVTQ 320 (365)
Q Consensus 308 ~~Ar~~~eral~~ 320 (365)
++|..+...++.+
T Consensus 222 ~eai~Ilk~il~~ 234 (711)
T COG1747 222 TEAIRILKHILEH 234 (711)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999999874
No 313
>KOG2041|consensus
Probab=93.11 E-value=10 Score=38.69 Aligned_cols=237 Identities=13% Similarity=0.102 Sum_probs=120.3
Q ss_pred hcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHH----------HHHHHhCCHHHHHHHHH
Q psy17788 106 LGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLL----------NLEHLYGTKESLQECLH 175 (365)
Q Consensus 106 ~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~----------~l~~~~g~~~~a~~v~~ 175 (365)
..+| ++.+|-.++.+.+..-+++.|...|-|+-. .+. ..+...+. .+-.-+|.+++|.++|-
T Consensus 687 EdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~d-Y~G------ik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yl 758 (1189)
T KOG2041|consen 687 EDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGD-YAG------IKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYL 758 (1189)
T ss_pred hcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhcc-ccc------hhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhh
Confidence 3345 679999999999998899999888877654 331 11221221 22234577888888876
Q ss_pred HHHHcCCCHH------HHHHHHHHHHHh--CCHHHHHH-HHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHH---
Q psy17788 176 EAVRCNDETK------VYMNMMEIYAAS--AQIRDLES-TVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHI--- 243 (365)
Q Consensus 176 ral~~~~~~~------~~~~l~~~~~~~--g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~--- 243 (365)
.+-+..-... -|++..+++..- +..++..+ .|+.+-.. ..+..-|...+.+|...|+.+.-..+
T Consensus 759 d~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~----fa~~~~We~A~~yY~~~~~~e~~~ecly~ 834 (1189)
T KOG2041|consen 759 DADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGET----FAEMMEWEEAAKYYSYCGDTENQIECLYR 834 (1189)
T ss_pred ccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhccchHhHHHHHHH
Confidence 6543322222 344444443321 12222222 22222222 34566677777777766655433222
Q ss_pred ------HHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH-------------------HH-----hCCCChhH
Q psy17788 244 ------LQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHT-------------------LT-----SYPARVDV 293 (365)
Q Consensus 244 ------l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~-------------------l~-----~~P~~~~~ 293 (365)
++.+...+|.+ ..++-.+|.+....|--++|.+.|-+. ++ ..|.-..+
T Consensus 835 le~f~~LE~la~~Lpe~--s~llp~~a~mf~svGMC~qAV~a~Lr~s~pkaAv~tCv~LnQW~~avelaq~~~l~qv~tl 912 (1189)
T KOG2041|consen 835 LELFGELEVLARTLPED--SELLPVMADMFTSVGMCDQAVEAYLRRSLPKAAVHTCVELNQWGEAVELAQRFQLPQVQTL 912 (1189)
T ss_pred HHhhhhHHHHHHhcCcc--cchHHHHHHHHHhhchHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhccchhHHHH
Confidence 22333445664 334555677776677666666655322 10 11222223
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHh
Q psy17788 294 WGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYG-DAEAVENVKKEIEQYVRN 360 (365)
Q Consensus 294 w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G-~~~~a~~v~~kA~~~v~~ 360 (365)
...++.-+...++.-+|++.+.++=. .+ ....+..+..+-|.+.| -+....++|--+.=.|++
T Consensus 913 iak~aaqll~~~~~~eaIe~~Rka~~-~~---daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~ 976 (1189)
T KOG2041|consen 913 IAKQAAQLLADANHMEAIEKDRKAGR-HL---DAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVEN 976 (1189)
T ss_pred HHHHHHHHHhhcchHHHHHHhhhccc-ch---hHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHH
Confidence 33344445555666666666666632 11 23344444444444433 445555555444444443
No 314
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=93.10 E-value=1.6 Score=32.39 Aligned_cols=44 Identities=16% Similarity=0.096 Sum_probs=22.2
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q psy17788 207 VKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPP 253 (365)
Q Consensus 207 ~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~ 253 (365)
++..+... |.+....+.++..+...|+++.|...+-.+++..+.
T Consensus 11 l~~~~a~~---P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~ 54 (90)
T PF14561_consen 11 LEAALAAN---PDDLDARYALADALLAAGDYEEALDQLLELVRRDRD 54 (90)
T ss_dssp HHHHHHHS---TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT
T ss_pred HHHHHHcC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 34444444 555555555555555555555555555555555444
No 315
>KOG3807|consensus
Probab=93.09 E-value=7.4 Score=36.11 Aligned_cols=181 Identities=15% Similarity=0.109 Sum_probs=103.1
Q ss_pred CCC-CChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788 93 GEP-VSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ 171 (365)
Q Consensus 93 ~~p-~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~ 171 (365)
+.| +-|..-..+|.+||....+++.++.- ...-+-+|..+|++||+.... . +. --+-...+|.
T Consensus 198 Rnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~-----~---yr-~sqq~qh~~~----- 261 (556)
T KOG3807|consen 198 RNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGET-----I---YR-QSQQCQHQSP----- 261 (556)
T ss_pred cCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHH-----H---Hh-hHHHHhhhcc-----
Confidence 344 55677777888888888887776553 344577788888888885441 0 10 0011111111
Q ss_pred HHHHHHHHcCCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCc--HHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy17788 172 ECLHEAVRCNDETKVY--MNMMEIYAASAQIRDLESTVKLLLKKAGQTHSS--VNIYLQCATLLLRLGQKDTARHILQRG 247 (365)
Q Consensus 172 ~v~~ral~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~a~~~~~~g~~~~A~~~l~ra 247 (365)
..+...+.+.+..+| .+++-+-.+.|+..+|.+.++.+.+.+ |-. ..+.-++...++...-+.....++-+-
T Consensus 262 -~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~---pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 262 -QHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEF---PLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred -chhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 111112223344555 456777788999999999999999887 422 356667777777776666666555443
Q ss_pred Hh-cCCCcchHHHHHHHHHHH-------------HHcCC---HHHHHHHHHHHHHhCCCChhHHH
Q psy17788 248 LN-NLPPAVHVTLITRFALAE-------------NKFGD---ASRAQALLEHTLTSYPARVDVWG 295 (365)
Q Consensus 248 l~-~~p~~~~~~~~~~~a~~~-------------~~~g~---~e~A~~~fe~~l~~~P~~~~~w~ 295 (365)
=. +.|+... +-+.-+.+- .+.|- --.|.....++++.+|.-+....
T Consensus 338 DdislPkSA~--icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYLL 400 (556)
T KOG3807|consen 338 DDISLPKSAA--ICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLL 400 (556)
T ss_pred ccccCcchHH--HHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHHH
Confidence 22 2455321 111111110 12221 12467778888888887655433
No 316
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.09 E-value=13 Score=38.92 Aligned_cols=269 Identities=13% Similarity=0.032 Sum_probs=153.6
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHhhcCCC-----CHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCcccc---chHH
Q psy17788 81 RIRQAEDELLQNGEPVSPDGFDRMLLGQPN-----NSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEE---DRLN 152 (365)
Q Consensus 81 ~~~~~e~~l~~~~~p~a~~~fe~~l~~~p~-----~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~---~~~~ 152 (365)
.+.+.+..+.++ .-+....+.+..-|. ++.+-+.++=......++++|..+..++....+..... +-.-
T Consensus 382 lle~~~~~L~~~---~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~a 458 (894)
T COG2909 382 LLEQLEWQLFNG---SELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLA 458 (894)
T ss_pred HHHhhhhhhhcc---cchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHH
Confidence 333444444442 224555555555553 44566666666677888999998888887766542111 1122
Q ss_pred HHHHHHH-HHHHhCCHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcC-CCCcHHHH
Q psy17788 153 VWTSLLN-LEHLYGTKESLQECLHEAVRCNDE------TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQ-THSSVNIY 224 (365)
Q Consensus 153 ~w~~~~~-l~~~~g~~~~a~~v~~ral~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~ 224 (365)
-|.++-. +....|+.+.+.++.++++..-|. ..++...+.+..-.|++++|+.+...+.+.... ......+|
T Consensus 459 e~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~ 538 (894)
T COG2909 459 EFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALW 538 (894)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 3444443 344568899999999999987663 235566677888889999999988777765210 03334566
Q ss_pred HHH--HHHHHHcCChHHHHHH--HHHH----HhcCCCcc-hHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCChhHH
Q psy17788 225 LQC--ATLLLRLGQKDTARHI--LQRG----LNNLPPAV-HVTLITRFALAENK-FGDASRAQALLEHTLTSYPARVDVW 294 (365)
Q Consensus 225 ~~~--a~~~~~~g~~~~A~~~--l~ra----l~~~p~~~-~~~~~~~~a~~~~~-~g~~e~A~~~fe~~l~~~P~~~~~w 294 (365)
..+ +.++..+|+...+... |.+. +...|... .+.+.......+.+ -+...+++.-++-....-|...+.|
T Consensus 539 ~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~ 618 (894)
T COG2909 539 SLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSR 618 (894)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHH
Confidence 666 5567778843333222 2221 11122211 11222222222222 2444556666655555556555444
Q ss_pred H---HHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHH-----HHHHhcCCHHHHHHHHHH
Q psy17788 295 G---VYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWL-----KLEEQYGDAEAVENVKKE 353 (365)
Q Consensus 295 ~---~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l-----~~e~~~G~~~~a~~v~~k 353 (365)
. +++.++...|+.+.|.....++..+-..+. ....|..-+ -+-...||.+.+..-..+
T Consensus 619 ~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~-~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 619 LALSMLAELEFLRGDLDKALAQLDELERLLLNGQ-YHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC-CCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 3 578888999999999999988887432222 334444332 233456887766554443
No 317
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=93.09 E-value=0.17 Score=28.05 Aligned_cols=31 Identities=26% Similarity=0.252 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17788 259 LITRFALAENKFGDASRAQALLEHTLTSYPA 289 (365)
Q Consensus 259 ~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~ 289 (365)
++..+|.++...|+++.|...|+.++...|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3445566666666666666666666665553
No 318
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.05 E-value=1.3 Score=40.32 Aligned_cols=81 Identities=14% Similarity=0.112 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCCCcHHHHHH
Q psy17788 257 VTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ---KLPPKKLKPLYMK 333 (365)
Q Consensus 257 ~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~---~l~~~~~~~~~~~ 333 (365)
+.++.+++..+...|+++.+...+++.+..+|.+-.+|..+...|...|+...|+..|++.-.. .+.......+++.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 4455566666666666666666666666666666666666666666666666666666665441 1222233455555
Q ss_pred HHHH
Q psy17788 334 WLKL 337 (365)
Q Consensus 334 ~l~~ 337 (365)
|...
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5554
No 319
>KOG0530|consensus
Probab=92.96 E-value=4.5 Score=36.25 Aligned_cols=184 Identities=10% Similarity=0.060 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHHHhC-CHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHhcCCCCcHHHHHHH
Q psy17788 151 LNVWTSLLNLEHLYG-TKESLQECLHEAVRCND-ETKVYMNMMEIYAASA-QIRDLESTVKLLLKKAGQTHSSVNIYLQC 227 (365)
Q Consensus 151 ~~~w~~~~~l~~~~g-~~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 227 (365)
..-.++|.+.-...+ .-..|..+-+.+|..+| +.++|..--.++...+ +..+-.+.+.+.+..+ |.|.++|-..
T Consensus 42 fr~~m~YfRAI~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~n---pKNYQvWHHR 118 (318)
T KOG0530|consen 42 FRDVMDYFRAIIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDN---PKNYQVWHHR 118 (318)
T ss_pred HHHHHHHHHHHHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC---ccchhHHHHH
Confidence 344556666444444 45789999999999999 4578865555655544 4666778888888888 9999999999
Q ss_pred HHHHHHcCChH-HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHh-cC
Q psy17788 228 ATLLLRLGQKD-TARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVK-SD 305 (365)
Q Consensus 228 a~~~~~~g~~~-~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~-~g 305 (365)
--+....|++. .-+.+..+++....++-|++-+.+++.- ..+.++.-.++-..+|..+--+-.+|...--+... .|
T Consensus 119 r~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r--~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~ 196 (318)
T KOG0530|consen 119 RVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLR--FFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKG 196 (318)
T ss_pred HHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHH--HHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccC
Confidence 99999999887 7778889999888887787776666544 45569999999999998887777888753222211 23
Q ss_pred Ch-----HHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHh-cC
Q psy17788 306 RV-----DLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQ-YG 342 (365)
Q Consensus 306 ~~-----~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~-~G 342 (365)
-. ++-..+....|. ..|.+...|.-...+.+. .|
T Consensus 197 ~~~~~~le~El~yt~~~I~---~vP~NeSaWnYL~G~l~~d~g 236 (318)
T KOG0530|consen 197 VISKAELERELNYTKDKIL---LVPNNESAWNYLKGLLELDSG 236 (318)
T ss_pred CccHHHHHHHHHHHHHHHH---hCCCCccHHHHHHHHHHhccC
Confidence 23 233445555554 788999999999888876 45
No 320
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.91 E-value=6.2 Score=38.63 Aligned_cols=155 Identities=12% Similarity=0.064 Sum_probs=90.7
Q ss_pred HcccCHHHHHHHHH--HHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH
Q psy17788 123 LQATEIEKARSIAR--RALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQI 200 (365)
Q Consensus 123 ~~~~~~e~A~~~~~--raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~ 200 (365)
+-.++++.+....+ +.+..+| .+.....+.+..+.|-.+.|..+ ..++..-+ ++-.+.|++
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~-------~~~~~~i~~fL~~~G~~e~AL~~-------~~D~~~rF---eLAl~lg~L 334 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIP-------KDQGQSIARFLEKKGYPELALQF-------VTDPDHRF---ELALQLGNL 334 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG---------HHHHHHHHHHHHHTT-HHHHHHH-------SS-HHHHH---HHHHHCT-H
T ss_pred HHcCChhhhhhhhhhhhhcccCC-------hhHHHHHHHHHHHCCCHHHHHhh-------cCChHHHh---HHHHhcCCH
Confidence 44677777666554 4455566 24566777777788877666554 33343223 344577888
Q ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Q psy17788 201 RDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALL 280 (365)
Q Consensus 201 ~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~f 280 (365)
+.|.++.+ . .+++..|..+|...+.+|+++-|..+|+++- + +..+..++.-.|+.+.-..+.
T Consensus 335 ~~A~~~a~-----~---~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~----d------~~~L~lLy~~~g~~~~L~kl~ 396 (443)
T PF04053_consen 335 DIALEIAK-----E---LDDPEKWKQLGDEALRQGNIELAEECYQKAK----D------FSGLLLLYSSTGDREKLSKLA 396 (443)
T ss_dssp HHHHHHCC-----C---CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHH
T ss_pred HHHHHHHH-----h---cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc----C------ccccHHHHHHhCCHHHHHHHH
Confidence 88877542 1 4578899999999999999999999998842 1 234455667788887777777
Q ss_pred HHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q psy17788 281 EHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRA 317 (365)
Q Consensus 281 e~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~era 317 (365)
..+....- ++..-.+..-.|++++..+++.++
T Consensus 397 ~~a~~~~~-----~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 397 KIAEERGD-----INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHTT------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHccC-----HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 66654322 222223344457777777776655
No 321
>KOG1550|consensus
Probab=92.87 E-value=12 Score=37.89 Aligned_cols=112 Identities=13% Similarity=-0.008 Sum_probs=77.0
Q ss_pred CHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q psy17788 166 TKESLQECLHEAVR-------CNDETKVYMNMMEIYAASA-----QIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLR 233 (365)
Q Consensus 166 ~~~~a~~v~~ral~-------~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~ 233 (365)
+.+.|...|+.+.. .. .......++.+|.+.. +...|..+|.++... .++...+.+|.++..
T Consensus 264 d~e~a~~~l~~aa~~~~~~a~~~-~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-----g~~~a~~~lg~~~~~ 337 (552)
T KOG1550|consen 264 DLESAIEYLKLAAESFKKAATKG-LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL-----GNPDAQYLLGVLYET 337 (552)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhc-CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc-----CCchHHHHHHHHHHc
Confidence 67888888888866 22 2334556777777643 567788888888774 366777777777765
Q ss_pred cC---ChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Q psy17788 234 LG---QKDTARHILQRGLNNLPPAVHVTLITRFALAENK----FGDASRAQALLEHTLTSY 287 (365)
Q Consensus 234 ~g---~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~----~g~~e~A~~~fe~~l~~~ 287 (365)
-. +...|..+|.+|... . |+..+..++.|+.. ..+...|..+|.++....
T Consensus 338 g~~~~d~~~A~~yy~~Aa~~--G--~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 338 GTKERDYRRAFEYYSLAAKA--G--HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred CCccccHHHHHHHHHHHHHc--C--ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 44 567888888888643 2 34566666777654 236778888888888766
No 322
>PRK10941 hypothetical protein; Provisional
Probab=92.71 E-value=1.9 Score=39.13 Aligned_cols=74 Identities=11% Similarity=-0.056 Sum_probs=48.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHH
Q psy17788 261 TRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWL 335 (365)
Q Consensus 261 ~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l 335 (365)
..+-..+.+.+++++|...-+.++...|+++.-|.-.|-+|...|.+..|+.-++.-+. .+|......+.+..+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~-~~P~dp~a~~ik~ql 258 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE-QCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH-hCCCchhHHHHHHHH
Confidence 34444556677777777777777777777777777777777777777777777777776 334333333333333
No 323
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=92.67 E-value=13 Score=37.99 Aligned_cols=195 Identities=16% Similarity=0.182 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHc-CCC----HHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHhcCCCCcH----HHHHHHHHHHHHcCCh
Q psy17788 168 ESLQECLHEAVRC-NDE----TKVYMNMMEIYA-ASAQIRDLESTVKLLLKKAGQTHSSV----NIYLQCATLLLRLGQK 237 (365)
Q Consensus 168 ~~a~~v~~ral~~-~~~----~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~a~~~~~~g~~ 237 (365)
..|++.++-+++. .++ ..+++.++.++. .+.+++.|+..+.+++..... +.-. .+-..++.++.+.+..
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER-HRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHhcCHH
Confidence 4567777777743 222 347788899877 678999999999999876521 1111 2234456777777766
Q ss_pred HHHHHHHHHHHhcCCCcchH--HHHHHHH--HHHHHcCCHHHHHHHHHHHHHhC--CCChhHH--HHHH--HHHHhcCCh
Q psy17788 238 DTARHILQRGLNNLPPAVHV--TLITRFA--LAENKFGDASRAQALLEHTLTSY--PARVDVW--GVYV--DMLVKSDRV 307 (365)
Q Consensus 238 ~~A~~~l~ral~~~p~~~~~--~~~~~~a--~~~~~~g~~e~A~~~fe~~l~~~--P~~~~~w--~~~~--~~~~~~g~~ 307 (365)
. |...++++++......+. ....+|. .+....+++..|...++.+.... +.++.+. ..+. .+....+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 6 999999999876552221 1122222 22333489999999999998754 3443332 2222 233456777
Q ss_pred HHHHHHHHHHHhC--CC--CC---CCcHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHhhhcc
Q psy17788 308 DLGRQVIQRAVTQ--KL--PP---KKLKPLYMKWLKL--EEQYGDAEAVENVKKEIEQYVRNSKNK 364 (365)
Q Consensus 308 ~~Ar~~~eral~~--~l--~~---~~~~~~~~~~l~~--e~~~G~~~~a~~v~~kA~~~v~~~~~~ 364 (365)
+.+.....++... .+ .+ ...-.+|...+++ ....|+...+.......-++++...+.
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~ 261 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKS 261 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcC
Confidence 7788888877541 11 11 1133456666654 445789889999988888888876654
No 324
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=92.64 E-value=1.1 Score=39.27 Aligned_cols=87 Identities=17% Similarity=0.156 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhhccCcc--ccchHHHHHHHHHHHHHhCCHH-------HHHHHHHHHHHcCC-------CHHHHHHHH
Q psy17788 128 IEKARSIARRALTVINIRN--EEDRLNVWTSLLNLEHLYGTKE-------SLQECLHEAVRCND-------ETKVYMNMM 191 (365)
Q Consensus 128 ~e~A~~~~~raL~~~p~~~--~~~~~~~w~~~~~l~~~~g~~~-------~a~~v~~ral~~~~-------~~~~~~~l~ 191 (365)
++.|...|.-||-...... ......+++.++-++...|+.+ .|...|++++...+ ...+...++
T Consensus 93 ~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLig 172 (214)
T PF09986_consen 93 LEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIG 172 (214)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHH
Confidence 4555555555544211111 1134567777888888777744 45666666665432 234667779
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHh
Q psy17788 192 EIYAASAQIRDLESTVKLLLKKA 214 (365)
Q Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~ 214 (365)
.+..+.|++++|...|.+++...
T Consensus 173 eL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 173 ELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHhCCHHHHHHHHHHHHcCC
Confidence 99999999999999999999875
No 325
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.38 E-value=5.6 Score=32.94 Aligned_cols=94 Identities=18% Similarity=0.104 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q psy17788 223 IYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLV 302 (365)
Q Consensus 223 ~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~ 302 (365)
..+..+.+-...++.+.+..++..+--.-|..+.+.++- |.++...|++.+|+.+|+.+...-|..+..--.++-|+.
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~--~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFD--GWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHH--HHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 445555556677899999999988777789876666555 889999999999999999998888888877777777777
Q ss_pred hcCChHHHHHHHHHHHh
Q psy17788 303 KSDRVDLGRQVIQRAVT 319 (365)
Q Consensus 303 ~~g~~~~Ar~~~eral~ 319 (365)
..|+.+ -|.+-+.++.
T Consensus 90 ~~~D~~-Wr~~A~evle 105 (160)
T PF09613_consen 90 ALGDPS-WRRYADEVLE 105 (160)
T ss_pred HcCChH-HHHHHHHHHh
Confidence 776653 3444445554
No 326
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.38 E-value=6.6 Score=33.79 Aligned_cols=77 Identities=12% Similarity=0.055 Sum_probs=42.1
Q ss_pred HHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHH
Q psy17788 122 HLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND-----ETKVYMNMMEIYAA 196 (365)
Q Consensus 122 ~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~-----~~~~~~~l~~~~~~ 196 (365)
++....-+.|+..|-++-. -| ..+...+-.+++.++.. .+.++++.++-+++...+ ++.++..|+.+|.+
T Consensus 116 ~Wsr~~d~~A~~~fL~~E~-~~---~l~t~elq~aLAtyY~k-rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~ 190 (203)
T PF11207_consen 116 HWSRFGDQEALRRFLQLEG-TP---ELETAELQYALATYYTK-RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK 190 (203)
T ss_pred HhhccCcHHHHHHHHHHcC-CC---CCCCHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 3444344556655544333 22 12345666666666653 356666666666666543 34566666666666
Q ss_pred hCCHHHH
Q psy17788 197 SAQIRDL 203 (365)
Q Consensus 197 ~g~~~~A 203 (365)
.|+++.|
T Consensus 191 ~~~~e~A 197 (203)
T PF11207_consen 191 LKNYEQA 197 (203)
T ss_pred hcchhhh
Confidence 6666554
No 327
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=92.21 E-value=1.1 Score=29.72 Aligned_cols=33 Identities=18% Similarity=0.262 Sum_probs=17.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q psy17788 262 RFALAENKFGDASRAQALLEHTLTSYPARVDVW 294 (365)
Q Consensus 262 ~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w 294 (365)
.+|..+++.|++++|+...+.+|+..|++..+.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 344455555666666666666666666554443
No 328
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=92.00 E-value=0.71 Score=30.56 Aligned_cols=39 Identities=18% Similarity=0.124 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHH
Q psy17788 223 IYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLIT 261 (365)
Q Consensus 223 ~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~ 261 (365)
..+.+|..+++.|++++|+.+.+++|+..|.+..+..+.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 345566677788888888888888888888765544443
No 329
>KOG2300|consensus
Probab=91.83 E-value=14 Score=36.20 Aligned_cols=190 Identities=11% Similarity=0.092 Sum_probs=112.5
Q ss_pred HHHHHHHHcccCHHHHHHHHHHHHh---hccCccccch--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHH---
Q psy17788 116 VKYMAYHLQATEIEKARSIARRALT---VINIRNEEDR--LNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVY--- 187 (365)
Q Consensus 116 ~~~~~~~~~~~~~e~A~~~~~raL~---~~p~~~~~~~--~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~--- 187 (365)
-..+.+.+-.|+..+|..-...+.. ..|.+--... ..+-.-++......+.++.|..-|..|++......++
T Consensus 327 E~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~ 406 (629)
T KOG2300|consen 327 EHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFC 406 (629)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3444455677888887766555544 2332100001 1222222223345578899999999998876655433
Q ss_pred -HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCC-----cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcch----H
Q psy17788 188 -MNMMEIYAASAQIRDLESTVKLLLKKAGQTHS-----SVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVH----V 257 (365)
Q Consensus 188 -~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~----~ 257 (365)
..++-.|.+.|+.+..-++++..--.. .++. ...+++.+|.+.+.++++.+|+..+.+.|+.-..... .
T Consensus 407 nlnlAi~YL~~~~~ed~y~~ld~i~p~n-t~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a 485 (629)
T KOG2300|consen 407 NLNLAISYLRIGDAEDLYKALDLIGPLN-TNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTA 485 (629)
T ss_pred HHhHHHHHHHhccHHHHHHHHHhcCCCC-CCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHH
Confidence 455778888887766555544332110 0011 1346788888889999999999999998876522111 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----hhHHH--HHHHHHHhcCC
Q psy17788 258 TLITRFALAENKFGDASRAQALLEHTLTSYPAR----VDVWG--VYVDMLVKSDR 306 (365)
Q Consensus 258 ~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~----~~~w~--~~~~~~~~~g~ 306 (365)
--+.-++.+..-.|+..+++.+..-++..-.+- +.+|. .|-+++...|+
T Consensus 486 ~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~ 540 (629)
T KOG2300|consen 486 CSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGE 540 (629)
T ss_pred HHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCc
Confidence 122334555567788888888887777654333 34564 45567777776
No 330
>KOG4507|consensus
Probab=91.79 E-value=2.8 Score=41.67 Aligned_cols=101 Identities=12% Similarity=-0.002 Sum_probs=49.7
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHH
Q psy17788 218 HSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVY 297 (365)
Q Consensus 218 ~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~ 297 (365)
+.+..++..-+-+....|+..+|..++.+++-..|....-..+..+|.++++.|....|--++.-++..-|.-+.-+..+
T Consensus 210 ~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l 289 (886)
T KOG4507|consen 210 TSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTL 289 (886)
T ss_pred chhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccccceeH
Confidence 44444444333333445566666666655555443321112334455566666665555555555555444444444455
Q ss_pred HHHHHhcCChHHHHHHHHHHH
Q psy17788 298 VDMLVKSDRVDLGRQVIQRAV 318 (365)
Q Consensus 298 ~~~~~~~g~~~~Ar~~~eral 318 (365)
+.++.-.|++......|..+.
T Consensus 290 ~~i~aml~~~N~S~~~ydha~ 310 (886)
T KOG4507|consen 290 GNIYAMLGEYNHSVLCYDHAL 310 (886)
T ss_pred HHHHHHHhhhhhhhhhhhhhh
Confidence 555555555554444444444
No 331
>KOG0687|consensus
Probab=91.59 E-value=6.5 Score=36.32 Aligned_cols=98 Identities=13% Similarity=0.150 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHh-hccCccccchHHHHHHHHHHHHHhCCHH-------HHHHHHHHHHHcCC-
Q psy17788 112 SELWVKYMAYHLQATEIEKARSIARRALT-VINIRNEEDRLNVWTSLLNLEHLYGTKE-------SLQECLHEAVRCND- 182 (365)
Q Consensus 112 ~~~w~~~~~~~~~~~~~e~A~~~~~raL~-~~p~~~~~~~~~~w~~~~~l~~~~g~~~-------~a~~v~~ral~~~~- 182 (365)
..+|...+.++.+.|+.+.|...+++... +.... .+.++.+..+++..-+++.. .|..++++.-.-..
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g---~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRr 180 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLG---HKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERR 180 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc---cchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhh
Confidence 47899999999999999999887776654 22211 45788888887776666544 44444444321111
Q ss_pred -CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q psy17788 183 -ETKVYMNMMEIYAASAQIRDLESTVKLLLKKA 214 (365)
Q Consensus 183 -~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 214 (365)
..++|. +-......+|.+|-.+|-..+..|
T Consensus 181 NRlKvY~--Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 181 NRLKVYQ--GLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred hhHHHHH--HHHHHHHHhHHHHHHHHHHHcccc
Confidence 123333 333445678999999999999887
No 332
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=91.42 E-value=8.7 Score=37.16 Aligned_cols=121 Identities=12% Similarity=0.048 Sum_probs=53.5
Q ss_pred HHhCCHHHHHHHHHHHHHcCCCH------HHH-HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHc
Q psy17788 162 HLYGTKESLQECLHEAVRCNDET------KVY-MNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRL 234 (365)
Q Consensus 162 ~~~g~~~~a~~v~~ral~~~~~~------~~~-~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~ 234 (365)
...++...+..+|.+......+. .++ .++++.|.. ++.+......-..-+.+ +.++.+-+=.+...++.
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~---~~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF---GKSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHh
Confidence 34455555555555554332211 122 222333322 23333333333333333 44444444445555566
Q ss_pred CChHHHHHHHHHHHhcCCCcc-------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17788 235 GQKDTARHILQRGLNNLPPAV-------------HVTLITRFALAENKFGDASRAQALLEHTLTS 286 (365)
Q Consensus 235 g~~~~A~~~l~ral~~~p~~~-------------~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~ 286 (365)
|.+.+|...+..--....... ...+-.-.|.++...|.+.+||.++++++..
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 666666555544332211100 0111112244555667777777777776654
No 333
>KOG3364|consensus
Probab=90.95 E-value=4.8 Score=32.31 Aligned_cols=80 Identities=14% Similarity=0.066 Sum_probs=49.3
Q ss_pred CCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcch
Q psy17788 181 NDETKVYMNMMEIYAASA---QIRDLESTVKLLLKKAGQTHS-SVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVH 256 (365)
Q Consensus 181 ~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~-~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~ 256 (365)
.++...-+.++-.+.++. +..+.+.+++..++.. +|. .....+.++--+++.|+|+.++.+.+..|+..|++..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~--~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA--HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc--CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 344445555555555543 3556677777777622 122 2345555666677788888888888888888877766
Q ss_pred HHHHHH
Q psy17788 257 VTLITR 262 (365)
Q Consensus 257 ~~~~~~ 262 (365)
+..+..
T Consensus 107 a~~Lk~ 112 (149)
T KOG3364|consen 107 ALELKE 112 (149)
T ss_pred HHHHHH
Confidence 554443
No 334
>KOG1920|consensus
Probab=90.85 E-value=21 Score=38.64 Aligned_cols=27 Identities=26% Similarity=0.130 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy17788 221 VNIYLQCATLLLRLGQKDTARHILQRG 247 (365)
Q Consensus 221 ~~~~~~~a~~~~~~g~~~~A~~~l~ra 247 (365)
..++..||..+...+.+++|--.|+++
T Consensus 939 k~i~~~ya~hL~~~~~~~~Aal~Ye~~ 965 (1265)
T KOG1920|consen 939 KVIYEAYADHLREELMSDEAALMYERC 965 (1265)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 456666777776666666666666553
No 335
>PF12854 PPR_1: PPR repeat
Probab=90.71 E-value=0.61 Score=27.59 Aligned_cols=30 Identities=17% Similarity=0.149 Sum_probs=23.5
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy17788 218 HSSVNIYLQCATLLLRLGQKDTARHILQRG 247 (365)
Q Consensus 218 ~~~~~~~~~~a~~~~~~g~~~~A~~~l~ra 247 (365)
+++..+|..+...+.+.|+.++|..+|+++
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 567778888888888888888888887753
No 336
>KOG1550|consensus
Probab=90.70 E-value=20 Score=36.17 Aligned_cols=241 Identities=12% Similarity=-0.029 Sum_probs=143.7
Q ss_pred CChHHHHHHhhc-----CCCCHHHHHHHHHHHHccc-----CHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHh-
Q psy17788 96 VSPDGFDRMLLG-----QPNNSELWVKYMAYHLQAT-----EIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLY- 164 (365)
Q Consensus 96 ~a~~~fe~~l~~-----~p~~~~~w~~~~~~~~~~~-----~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~- 164 (365)
.++..|+.+... .-..+.+...++.+|.+.. +...|..+|.+|-.... .+.-+.++.++..-
T Consensus 267 ~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-------~~a~~~lg~~~~~g~ 339 (552)
T KOG1550|consen 267 SAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-------PDAQYLLGVLYETGT 339 (552)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-------chHHHHHHHHHHcCC
Confidence 667777777651 1113445667777776643 67789999998887443 24444455544322
Q ss_pred --CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH-cCCh
Q psy17788 165 --GTKESLQECLHEAVRCNDETKVYMNMMEIYAAS----AQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLR-LGQK 237 (365)
Q Consensus 165 --g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~-~g~~ 237 (365)
.+...|...|..|.... .......++.+|..- .+...|...|+++..+. ++.+...++.++.- .+.+
T Consensus 340 ~~~d~~~A~~yy~~Aa~~G-~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-----~~~A~~~~~~~~~~g~~~~ 413 (552)
T KOG1550|consen 340 KERDYRRAFEYYSLAAKAG-HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-----NPSAAYLLGAFYEYGVGRY 413 (552)
T ss_pred ccccHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-----ChhhHHHHHHHHHHccccc
Confidence 24678999999997654 455666677666542 36889999999999873 55544444444432 3666
Q ss_pred HHHHHHHHHHHhcC---CCcchHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc----CCh
Q psy17788 238 DTARHILQRGLNNL---PPAVHVTLITRFALAENK---FGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKS----DRV 307 (365)
Q Consensus 238 ~~A~~~l~ral~~~---p~~~~~~~~~~~a~~~~~---~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~----g~~ 307 (365)
..+...+..+-..- +......+.......... ..+.+.+...+.++. ...+.++...+++++..- .++
T Consensus 414 ~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~--~~g~~~a~~~lgd~y~~g~g~~~d~ 491 (552)
T KOG1550|consen 414 DTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAA--AQGNADAILKLGDYYYYGLGTGRDP 491 (552)
T ss_pred cHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHH--hccCHHHHhhhcceeeecCCCCCCh
Confidence 66655444433321 111011111111000011 125567777777764 355678888888887643 368
Q ss_pred HHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCH--HHHHHHHHHHHH
Q psy17788 308 DLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDA--EAVENVKKEIEQ 356 (365)
Q Consensus 308 ~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~--~~a~~v~~kA~~ 356 (365)
..|-..|.++..+ + ...+|..-.-.|...|-. ..|.+.+++|.+
T Consensus 492 ~~a~~~y~~a~~~---~--~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 492 EKAAAQYARASEQ---G--AQALFNLGYMHEHGEGIKVLHLAKRYYDQASE 537 (552)
T ss_pred HHHHHHHHHHHHh---h--hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHh
Confidence 8999999999873 2 566777666666666654 555566666554
No 337
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=90.63 E-value=0.35 Score=27.32 Aligned_cols=28 Identities=11% Similarity=0.237 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q psy17788 186 VYMNMMEIYAASAQIRDLESTVKLLLKK 213 (365)
Q Consensus 186 ~~~~l~~~~~~~g~~~~A~~~~~~al~~ 213 (365)
+|..+++.|.+.|++++|.++|+++.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 4667777778888888888888777653
No 338
>KOG2300|consensus
Probab=90.22 E-value=20 Score=35.17 Aligned_cols=225 Identities=14% Similarity=0.109 Sum_probs=138.9
Q ss_pred HcccCHHHHHHHHHHHHhhccCccccc-hHHH--------HHHHHHHHHHhCCHHHHHHHHHHHHHcC---CC-------
Q psy17788 123 LQATEIEKARSIARRALTVINIRNEED-RLNV--------WTSLLNLEHLYGTKESLQECLHEAVRCN---DE------- 183 (365)
Q Consensus 123 ~~~~~~e~A~~~~~raL~~~p~~~~~~-~~~~--------w~~~~~l~~~~g~~~~a~~v~~ral~~~---~~------- 183 (365)
+..|-+++|.++-+.++.....-...+ ...+ .-..+-+....|++..|++-...+...+ |.
T Consensus 286 m~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~ 365 (629)
T KOG2300|consen 286 MPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAH 365 (629)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHh
Confidence 456778999999999887533222222 1111 2223334556788888887766665443 32
Q ss_pred -HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHH----HHHHHHHHHHcCChHHHHHHHHHHHhcC--CCcc-
Q psy17788 184 -TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNI----YLQCATLLLRLGQKDTARHILQRGLNNL--PPAV- 255 (365)
Q Consensus 184 -~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~a~~~~~~g~~~~A~~~l~ral~~~--p~~~- 255 (365)
..++..++......|-++.|...|..+++.- ...++ -.++|-.|++.|+-+.--++++..--.+ +...
T Consensus 366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t----~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq 441 (629)
T KOG2300|consen 366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLT----ESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQ 441 (629)
T ss_pred HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhh----hHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHH
Confidence 2244444555556688999999999999873 33333 3566778899888776666665532111 1111
Q ss_pred --hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh-------HHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC
Q psy17788 256 --HVTLITRFALAENKFGDASRAQALLEHTLTSYPARVD-------VWGVYVDMLVKSDRVDLGRQVIQRAVTQKL-PPK 325 (365)
Q Consensus 256 --~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~-------~w~~~~~~~~~~g~~~~Ar~~~eral~~~l-~~~ 325 (365)
...+++-+|.+.++.+++.+|+..+.+.++.- +..+ ....++.+....|+..++++...-++...- .|+
T Consensus 442 ~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma-naed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~D 520 (629)
T KOG2300|consen 442 RLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA-NAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPD 520 (629)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCC
Confidence 13466677889999999999999999998754 2222 233445556677899899888877766311 234
Q ss_pred CcHHHHHH--HHHHHHhcCC--HHHHHHHHH
Q psy17788 326 KLKPLYMK--WLKLEEQYGD--AEAVENVKK 352 (365)
Q Consensus 326 ~~~~~~~~--~l~~e~~~G~--~~~a~~v~~ 352 (365)
....+|-. |-++++..|+ .+...+.+.
T Consensus 521 i~vqLws~si~~~L~~a~g~~~~~~e~e~~~ 551 (629)
T KOG2300|consen 521 IPVQLWSSSILTDLYQALGEKGNEMENEAFR 551 (629)
T ss_pred chHHHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 45556654 3456777777 444444433
No 339
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.15 E-value=0.67 Score=28.21 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy17788 223 IYLQCATLLLRLGQKDTARHILQRGLN 249 (365)
Q Consensus 223 ~~~~~a~~~~~~g~~~~A~~~l~ral~ 249 (365)
++..+|.+|...|++++|..++++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 445556666666666666666666554
No 340
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.01 E-value=9.4 Score=31.20 Aligned_cols=99 Identities=22% Similarity=0.188 Sum_probs=62.9
Q ss_pred HhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHH
Q psy17788 196 ASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASR 275 (365)
Q Consensus 196 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~ 275 (365)
..++++++..++..+--.- |..+.+-+--+.++...|++.+|..+|......-+..+....+. +.|++-.|++
T Consensus 22 ~~~d~~D~e~lLdALrvLr---P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~--A~CL~al~Dp-- 94 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLR---PNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALL--ALCLNAKGDA-- 94 (153)
T ss_pred hcCCHHHHHHHHHHHHHhC---CCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHH--HHHHHhcCCh--
Confidence 3677777777777666555 77777777777788888888888888877766655544444333 5555555553
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy17788 276 AQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAV 318 (365)
Q Consensus 276 A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral 318 (365)
.|..+++-....|....++.+.+...
T Consensus 95 -----------------~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 95 -----------------EWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred -----------------HHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 35555555555555555555544443
No 341
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=89.90 E-value=11 Score=34.39 Aligned_cols=145 Identities=12% Similarity=0.088 Sum_probs=87.2
Q ss_pred cCCCCHHHHHHHHHHH----HcccCHHHHHHHHHHHHh-hccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--
Q psy17788 107 GQPNNSELWVKYMAYH----LQATEIEKARSIARRALT-VINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVR-- 179 (365)
Q Consensus 107 ~~p~~~~~w~~~~~~~----~~~~~~e~A~~~~~raL~-~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~-- 179 (365)
.+|.++..|+.+-.-. ++.+ ++-++-+...+. .-....+.+...+|...+..+...++.+.+.+...+.+.
T Consensus 68 ~n~kt~a~~ikfD~~~~n~l~kkn--eeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a 145 (412)
T COG5187 68 GNPKTSASVIKFDRGRMNTLLKKN--EEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDA 145 (412)
T ss_pred cCCcccchheehhhHHHHHHHHhh--HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 3888888888654333 3322 222222322232 212223446789999999999998888877766555543
Q ss_pred --cCCCHHHH---HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q psy17788 180 --CNDETKVY---MNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPP 253 (365)
Q Consensus 180 --~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~ 253 (365)
..-...++ .+++-+|....-.++.++..+.++.+.|.=...-..-..+|.+.+...++.+|-.++..++..+..
T Consensus 146 ~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S 224 (412)
T COG5187 146 MSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFES 224 (412)
T ss_pred HhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccccc
Confidence 33334444 455666766666777788888888774210001122233456677778899999999888776554
No 342
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=89.90 E-value=0.7 Score=40.40 Aligned_cols=59 Identities=22% Similarity=0.245 Sum_probs=37.2
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy17788 230 LLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPAR 290 (365)
Q Consensus 230 ~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~ 290 (365)
.....++.+.|-++|.+++...|.. ..-|.++|....+.|+++.|...|++.++.+|.+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w--~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEW--AAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchh--hhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3444566666666666666666663 4455666666666666666666666666666654
No 343
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=89.87 E-value=32 Score=37.05 Aligned_cols=102 Identities=15% Similarity=0.069 Sum_probs=70.6
Q ss_pred HHHHHcccCHHHHHHHHHHHHhhccCccccc--hHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHcCCCHHHHHHHHHH
Q psy17788 119 MAYHLQATEIEKARSIARRALTVINIRNEED--RLNVWTSLLNLEHLYGT---KESLQECLHEAVRCNDETKVYMNMMEI 193 (365)
Q Consensus 119 ~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~--~~~~w~~~~~l~~~~g~---~~~a~~v~~ral~~~~~~~~~~~l~~~ 193 (365)
-++++....++.|...|+|.-..+|.|.+.- ...+-+.++.-....|+ ++.|..-|++.-.....+--|+.-+-+
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGKALV 561 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhHHHH
Confidence 3455666778999999999998899876432 12233333332233343 556666676654333345568888999
Q ss_pred HHHhCCHHHHHHHHHHHHHHhcCCCCcHHH
Q psy17788 194 YAASAQIRDLESTVKLLLKKAGQTHSSVNI 223 (365)
Q Consensus 194 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 223 (365)
|.+.|++++-++.|.-+++++ |+.|.+
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 588 (932)
T PRK13184 562 YQRLGEYNEEIKSLLLALKRY---SQHPEI 588 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHhc---CCCCcc
Confidence 999999999999999999999 666554
No 344
>PF13041 PPR_2: PPR repeat family
Probab=89.76 E-value=1.5 Score=28.19 Aligned_cols=43 Identities=12% Similarity=0.108 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHH
Q psy17788 152 NVWTSLLNLEHLYGTKESLQECLHEAVRCN--DETKVYMNMMEIY 194 (365)
Q Consensus 152 ~~w~~~~~l~~~~g~~~~a~~v~~ral~~~--~~~~~~~~l~~~~ 194 (365)
-.|..++..+.+.|+.++|.++|++..... |+...|..++..+
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 456666666667777777777777766543 5555666555544
No 345
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.35 E-value=2.1 Score=38.92 Aligned_cols=63 Identities=19% Similarity=0.098 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17788 221 VNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLT 285 (365)
Q Consensus 221 ~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~ 285 (365)
..++..++..+...|+++.+...+++.+...|.+ -..+..+...+...|+...|+..|+++-.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~--E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYD--EPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccc--hHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4455555555555555555555555555555553 23444445555555555555555555543
No 346
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=89.30 E-value=0.54 Score=41.08 Aligned_cols=58 Identities=16% Similarity=0.085 Sum_probs=39.3
Q ss_pred HHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc
Q psy17788 194 YAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPA 254 (365)
Q Consensus 194 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~ 254 (365)
..+.++.+.+.++|.+++... |.....|..++.+..+.|+++.|-..|...|+.+|.+
T Consensus 5 ~~~~~D~~aaaely~qal~la---p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELA---PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcC---chhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 345566666777777777666 6667777777777777777777777777777666654
No 347
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.29 E-value=7 Score=31.92 Aligned_cols=82 Identities=15% Similarity=0.041 Sum_probs=59.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHh
Q psy17788 224 YLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVK 303 (365)
Q Consensus 224 ~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~ 303 (365)
.+.....-...++++++..++..+--.-|+.+.+.++- |.++...|++++|..+|..+...-|..+..--.++-|+..
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a 90 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA 90 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence 33444444557888888888887766778876655544 7888899999999999999887776666666666777766
Q ss_pred cCCh
Q psy17788 304 SDRV 307 (365)
Q Consensus 304 ~g~~ 307 (365)
.|+.
T Consensus 91 l~Dp 94 (153)
T TIGR02561 91 KGDA 94 (153)
T ss_pred cCCh
Confidence 6655
No 348
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=89.12 E-value=1 Score=25.88 Aligned_cols=32 Identities=19% Similarity=0.430 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q psy17788 293 VWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPP 324 (365)
Q Consensus 293 ~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~ 324 (365)
.|..++..+.+.|++++|..+|.+.....+.|
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEP 33 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 47777888888888888888888887754443
No 349
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=88.92 E-value=3 Score=31.14 Aligned_cols=55 Identities=18% Similarity=0.205 Sum_probs=29.2
Q ss_pred HhCCHHHHHHHHHHHHHHhcCCCC------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy17788 196 ASAQIRDLESTVKLLLKKAGQTHS------SVNIYLQCATLLLRLGQKDTARHILQRGLNN 250 (365)
Q Consensus 196 ~~g~~~~A~~~~~~al~~~~~~~~------~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~ 250 (365)
+.|++..|.+.+.+.......... .....+.++.++...|++++|...++.|+..
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 455566665555554443321111 1234555666666666666666666666655
No 350
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=88.90 E-value=9.3 Score=37.24 Aligned_cols=129 Identities=13% Similarity=0.078 Sum_probs=74.4
Q ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHH
Q psy17788 165 GTKESLQECLHEAVRCNDETKVYMNM-MEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHI 243 (365)
Q Consensus 165 g~~~~a~~v~~ral~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 243 (365)
|+.-.|-.-...+++..|...++..+ +.++...|.++.+...+..+-+.. ....+....+..-....|..++|...
T Consensus 303 gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~---~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 303 GDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKII---GTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred cCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhh---cCCchHHHHHHHhhhchhhHHHHHHH
Confidence 45555555555566666655555443 667777777777777766555544 33344444555556667777777766
Q ss_pred HHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHH
Q psy17788 244 LQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYV 298 (365)
Q Consensus 244 l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~ 298 (365)
-..+|...-..+. ++.-.+---..+|-++++...+.+++..+|..-..|..+.
T Consensus 380 a~~~l~~eie~~e--i~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~ 432 (831)
T PRK15180 380 AEMMLSNEIEDEE--VLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFL 432 (831)
T ss_pred HHHHhccccCChh--heeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeee
Confidence 6665544322221 1111122234566777888888888877776655665544
No 351
>KOG3364|consensus
Probab=88.89 E-value=6 Score=31.76 Aligned_cols=75 Identities=16% Similarity=0.153 Sum_probs=53.0
Q ss_pred CcHHHHHHHHHHHHHcCC---hHHHHHHHHHHHh-cCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q psy17788 219 SSVNIYLQCATLLLRLGQ---KDTARHILQRGLN-NLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVW 294 (365)
Q Consensus 219 ~~~~~~~~~a~~~~~~g~---~~~A~~~l~ral~-~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w 294 (365)
.+.+.-++|+-.+.+..+ ..+.+.+++..+. ..|.. .-..++.+|.-+++.|++++++.+....++..|++..+.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~-rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPER-RRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCccc-chhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 355666777777776543 4566778888886 34443 334555567778889999999999999998888876553
No 352
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=88.76 E-value=1.1 Score=25.80 Aligned_cols=30 Identities=13% Similarity=0.178 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q psy17788 293 VWGVYVDMLVKSDRVDLGRQVIQRAVTQKL 322 (365)
Q Consensus 293 ~w~~~~~~~~~~g~~~~Ar~~~eral~~~l 322 (365)
.|..+++.+.+.|+++.|..+|+.....++
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv 32 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGV 32 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 566777777777777777777777765433
No 353
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=88.61 E-value=9.6 Score=30.42 Aligned_cols=27 Identities=15% Similarity=0.015 Sum_probs=10.9
Q ss_pred CChHHHHHHhhcCCCCHHHHHHHHHHH
Q psy17788 96 VSPDGFDRMLLGQPNNSELWVKYMAYH 122 (365)
Q Consensus 96 ~a~~~fe~~l~~~p~~~~~w~~~~~~~ 122 (365)
..+..++.++..++.++.+...++..+
T Consensus 25 ~l~~yLe~~~~~~~~~~~~~~~li~ly 51 (140)
T smart00299 25 ELIPYLESALKLNSENPALQTKLIELY 51 (140)
T ss_pred HHHHHHHHHHccCccchhHHHHHHHHH
Confidence 333444444444333444444444433
No 354
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.01 E-value=1.5 Score=26.58 Aligned_cols=27 Identities=30% Similarity=0.283 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17788 259 LITRFALAENKFGDASRAQALLEHTLT 285 (365)
Q Consensus 259 ~~~~~a~~~~~~g~~e~A~~~fe~~l~ 285 (365)
.+..+|.++...|++++|..++++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 345556666666666666666666654
No 355
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=87.33 E-value=13 Score=29.30 Aligned_cols=93 Identities=15% Similarity=0.134 Sum_probs=44.6
Q ss_pred HHHHcccCHHHHHHHHHHHHh---hccCccccchHH--H--HHHHHHHHHHhCCHHHHHHHHHHHHHcC-------C-CH
Q psy17788 120 AYHLQATEIEKARSIARRALT---VINIRNEEDRLN--V--WTSLLNLEHLYGTKESLQECLHEAVRCN-------D-ET 184 (365)
Q Consensus 120 ~~~~~~~~~e~A~~~~~raL~---~~p~~~~~~~~~--~--w~~~~~l~~~~g~~~~a~~v~~ral~~~-------~-~~ 184 (365)
.-.++.|.+++|..-+++|+. ++|..+.+++.. . ...+.......|.++.+...-+++|.+. . ..
T Consensus 17 e~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeG 96 (144)
T PF12968_consen 17 ERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEG 96 (144)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccc
Confidence 334677888999888888886 577655444311 1 1122233445566665555555554432 1 22
Q ss_pred HHHHH----HHHHHHHhCCHHHHHHHHHHHHH
Q psy17788 185 KVYMN----MMEIYAASAQIRDLESTVKLLLK 212 (365)
Q Consensus 185 ~~~~~----l~~~~~~~g~~~~A~~~~~~al~ 212 (365)
+.|+. -+..+.-.|+.++|...|+.+..
T Consensus 97 klWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 97 KLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 33322 23344455555555555555443
No 356
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=86.89 E-value=1.4 Score=25.35 Aligned_cols=28 Identities=11% Similarity=0.300 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q psy17788 186 VYMNMMEIYAASAQIRDLESTVKLLLKK 213 (365)
Q Consensus 186 ~~~~l~~~~~~~g~~~~A~~~~~~al~~ 213 (365)
.|..++..|.+.|++++|.++|.++.+.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 4667777888888888888888887654
No 357
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=86.83 E-value=20 Score=34.35 Aligned_cols=57 Identities=11% Similarity=-0.009 Sum_probs=35.9
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHH--HHHHHHHHHH--HcCChHHHHHHHHHHHhc
Q psy17788 191 MEIYAASAQIRDLESTVKLLLKKAGQTHSSVN--IYLQCATLLL--RLGQKDTARHILQRGLNN 250 (365)
Q Consensus 191 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~a~~~~--~~g~~~~A~~~l~ral~~ 250 (365)
+.-..+.++|..|..+|..++.+. +.+.. .+..++..|. ..-++.+|...++..+..
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~rl---~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRRL---PGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhC---CchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 444557788888888888888763 33333 3444444333 356777888888776654
No 358
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=86.77 E-value=4.8 Score=29.97 Aligned_cols=58 Identities=21% Similarity=0.259 Sum_probs=30.4
Q ss_pred HcccCHHHHHHHHHHHHhhccCccccc----hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Q psy17788 123 LQATEIEKARSIARRALTVINIRNEED----RLNVWTSLLNLEHLYGTKESLQECLHEAVRC 180 (365)
Q Consensus 123 ~~~~~~e~A~~~~~raL~~~p~~~~~~----~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~ 180 (365)
++.+++..|...+.+.+.......... ....++.++.+....|+++.|...+++|+++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 566777777666666665333211101 1223344444555566666666666666544
No 359
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=86.56 E-value=25 Score=31.94 Aligned_cols=141 Identities=10% Similarity=-0.026 Sum_probs=88.1
Q ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHhcCCCCcHHH---HHHHHHHHHHcC---
Q psy17788 166 TKESLQECLHEAVRCNDETKVYMNMMEIYAA----SAQIRDLESTVKLLLKKAGQTHSSVNI---YLQCATLLLRLG--- 235 (365)
Q Consensus 166 ~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~---~~~~a~~~~~~g--- 235 (365)
+...|...|..+... ........|+.+|.. ..+..+|...|.++.... ++.. .+.++.++..-+
T Consensus 92 ~~~~A~~~~~~~a~~-g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g-----~~~a~~~~~~l~~~~~~g~~~~ 165 (292)
T COG0790 92 DKTKAADWYRCAAAD-GLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLG-----NVEAALAMYRLGLAYLSGLQAL 165 (292)
T ss_pred cHHHHHHHHHHHhhc-ccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcC-----ChhHHHHHHHHHHHHHcChhhh
Confidence 567777777755433 234455567777665 337788888888888764 3333 666666666531
Q ss_pred ----ChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC--
Q psy17788 236 ----QKDTARHILQRGLNNLPPAVHVTLITRFALAENK----FGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSD-- 305 (365)
Q Consensus 236 ----~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~----~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g-- 305 (365)
+...|...|.++-... +......+|.++.. ..+..+|..+|.++..... ...+..++ ++...|
T Consensus 166 ~~~~~~~~A~~~~~~aa~~~----~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g 238 (292)
T COG0790 166 AVAYDDKKALYLYRKAAELG----NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEG 238 (292)
T ss_pred cccHHHHhHHHHHHHHHHhc----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCC
Confidence 2236788888876554 23344555666544 2377889999998877665 66666666 444444
Q ss_pred -------------ChHHHHHHHHHHHh
Q psy17788 306 -------------RVDLGRQVIQRAVT 319 (365)
Q Consensus 306 -------------~~~~Ar~~~eral~ 319 (365)
+...|...|..+..
T Consensus 239 ~~~~~~~~~~~~~~~~~a~~~~~~~~~ 265 (292)
T COG0790 239 VKKAAFLTAAKEEDKKQALEWLQKACE 265 (292)
T ss_pred chhhhhcccccCCCHHHHHHHHHHHHH
Confidence 55556666666655
No 360
>KOG2114|consensus
Probab=86.06 E-value=46 Score=34.84 Aligned_cols=30 Identities=17% Similarity=0.264 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHhhc
Q psy17788 113 ELWVKYMAYHLQATEIEKARSIARRALTVI 142 (365)
Q Consensus 113 ~~w~~~~~~~~~~~~~e~A~~~~~raL~~~ 142 (365)
.+...||.++.+.|+++.|...|-+++...
T Consensus 369 ~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l 398 (933)
T KOG2114|consen 369 EIHRKYGDYLYGKGDFDEATDQYIETIGFL 398 (933)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence 577889999999999999999998887744
No 361
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=85.94 E-value=1.4 Score=24.74 Aligned_cols=27 Identities=7% Similarity=0.124 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788 293 VWGVYVDMLVKSDRVDLGRQVIQRAVT 319 (365)
Q Consensus 293 ~w~~~~~~~~~~g~~~~Ar~~~eral~ 319 (365)
.|..+++.+.+.|++++|..+|++...
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 467777778888888888888877764
No 362
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=85.80 E-value=2.1 Score=26.60 Aligned_cols=32 Identities=19% Similarity=0.117 Sum_probs=26.5
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHhcCChHHH
Q psy17788 279 LLEHTLTSYPARVDVWGVYVDMLVKSDRVDLG 310 (365)
Q Consensus 279 ~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~A 310 (365)
.|..+|-.+|.+...+..|++.+..+|+..++
T Consensus 4 all~AI~~~P~ddt~RLvYADWL~e~gdp~ra 35 (42)
T TIGR02996 4 ALLRAILAHPDDDTPRLVYADWLDEHGDPARA 35 (42)
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHHcCCHHHH
Confidence 46778888899888999999999998888654
No 363
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=85.54 E-value=3.5 Score=37.51 Aligned_cols=60 Identities=18% Similarity=0.055 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy17788 259 LITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAV 318 (365)
Q Consensus 259 ~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral 318 (365)
++...+..+...|.+.+|.++.+++++.+|-+-..|..+...+...|+-..+..-|+|.-
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 444557777888999999999999999999988999999999999998877777777654
No 364
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=85.53 E-value=4.5 Score=39.35 Aligned_cols=121 Identities=11% Similarity=-0.004 Sum_probs=93.1
Q ss_pred HHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHH
Q psy17788 195 AASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDAS 274 (365)
Q Consensus 195 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e 274 (365)
...|+.-.|-.-...++..+ ++.|......+.+....|.++.+...+..+=.....-.. .......-.+++|+++
T Consensus 300 ~~~gd~~aas~~~~~~lr~~---~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~--~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQ---QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDS--TLRCRLRSLHGLARWR 374 (831)
T ss_pred hhccCHHHHHHHHHHHHHhC---CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCch--HHHHHHHhhhchhhHH
Confidence 35688888877777888888 999999999999999999999999888665444333211 2233355667899999
Q ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788 275 RAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ 320 (365)
Q Consensus 275 ~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~ 320 (365)
.|...-+.+|...-..+++....+-.-...|-++++...|++.+-+
T Consensus 375 ~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 375 EALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 9999999999877667777666666666678889999999999865
No 365
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=84.66 E-value=1.3 Score=24.27 Aligned_cols=20 Identities=40% Similarity=0.514 Sum_probs=8.3
Q ss_pred HHHHHHHHHcCChHHHHHHH
Q psy17788 225 LQCATLLLRLGQKDTARHIL 244 (365)
Q Consensus 225 ~~~a~~~~~~g~~~~A~~~l 244 (365)
+.++..+...|++++|+.++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 33444444444444444433
No 366
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=84.40 E-value=35 Score=31.88 Aligned_cols=128 Identities=13% Similarity=0.096 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CH-HHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHhcCCCCcHHH
Q psy17788 151 LNVWTSLLNLEHLYGTKESLQECLHEAVRCND-ET-KVYMNMMEIYAA-----SAQIRDLESTVKLLLKKAGQTHSSVNI 223 (365)
Q Consensus 151 ~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~-~~-~~~~~l~~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~ 223 (365)
-.+|..-+ ++.+..++.+|+.... .+ .+--.++.+... .-++.....+|+.+... ..+|.+
T Consensus 264 r~lW~r~l--------I~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~----apSPvV 331 (415)
T COG4941 264 RSLWDRAL--------IDEGLALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQA----APSPVV 331 (415)
T ss_pred hhhhhHHH--------HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHh----CCCCeE
Confidence 46776433 4566777888877653 22 222223333332 22566777777777665 556777
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh
Q psy17788 224 YLQCATLLLRLGQKDTARHILQRGLNN--LPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVD 292 (365)
Q Consensus 224 ~~~~a~~~~~~g~~~~A~~~l~ral~~--~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~ 292 (365)
-++-+-.....-.+..++...+..... +....+.. .--|.++.+.|..++|+..|++++..-++...
T Consensus 332 ~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h--~~RadlL~rLgr~~eAr~aydrAi~La~~~ae 400 (415)
T COG4941 332 TLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYH--AARADLLARLGRVEEARAAYDRAIALARNAAE 400 (415)
T ss_pred eehHHHHHHHhhhHHhHHHHHHHhhcccccccccccH--HHHHHHHHHhCChHHHHHHHHHHHHhcCChHH
Confidence 777777777777778888877776655 34433333 33388888999999999999999888776544
No 367
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=84.24 E-value=14 Score=28.61 Aligned_cols=44 Identities=7% Similarity=0.009 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788 276 AQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVT 319 (365)
Q Consensus 276 A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~ 319 (365)
+..-|.+++...|......+.+++-+...-.+.++..--+|++.
T Consensus 63 sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 63 SVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred hHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 34455555566666655555555444333334444444444443
No 368
>KOG4422|consensus
Probab=84.14 E-value=42 Score=32.49 Aligned_cols=245 Identities=12% Similarity=0.072 Sum_probs=138.3
Q ss_pred HHHhcCCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCC
Q psy17788 87 DELLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGT 166 (365)
Q Consensus 87 ~~l~~~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~ 166 (365)
+..+-.++.-++..|.--...+|.++..=..++. .+..+++..+.-+|+|.-.-... -...+-..++.+-.-+++
T Consensus 91 ~LF~~~~~QP~l~~F~P~~l~~~~~V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~----vS~kvq~~L~~LV~~~Ns 165 (625)
T KOG4422|consen 91 TLFAFDRDQPQLPVFRPRHLADPLQVETENNLLK-MISSREVKDSCILYERMRSENVD----VSEKVQLELFRLVTYYNS 165 (625)
T ss_pred HhhhccccCccccccCchhcCCchhhcchhHHHH-HHhhcccchhHHHHHHHHhcCCC----CCHHHHHHHHHHHHhhcC
Confidence 3445555556677777777778877654444433 46778888899899887653221 112332222222111111
Q ss_pred ---------------------------HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCC
Q psy17788 167 ---------------------------KESLQECLHEAVRCND-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTH 218 (365)
Q Consensus 167 ---------------------------~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 218 (365)
-+-|. ++-+. -| ....+..++.-.++--..++|+++|++.-...| .
T Consensus 166 ~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAd-L~~E~---~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~--k 239 (625)
T KOG4422|consen 166 SNVPFAEWEEFVGMRNFGEDSTSSWKSGAVAD-LLFET---LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKG--K 239 (625)
T ss_pred CCCcchhHHHHhhccccccccccccccccHHH-HHHhh---cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhh--e
Confidence 01122 22222 23 334566666666676788999999998876543 3
Q ss_pred CcHHHHHHHHHHHH-HcCChHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCC
Q psy17788 219 SSVNIYLQCATLLL-RLGQKDTARHILQRGLN--NLPPAVHVTLITRFALAENKFGDASRAQALLEHTLT------SYPA 289 (365)
Q Consensus 219 ~~~~~~~~~a~~~~-~~g~~~~A~~~l~ral~--~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~------~~P~ 289 (365)
-+..++..++..-. ..| ..+...++. ..|+ +..+..+-.+..+.|+++.|+..+-++|. ..|.
T Consensus 240 v~~~aFN~lI~~~S~~~~-----K~Lv~EMisqkm~Pn---l~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePs 311 (625)
T KOG4422|consen 240 VYREAFNGLIGASSYSVG-----KKLVAEMISQKMTPN---LFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPS 311 (625)
T ss_pred eeHHhhhhhhhHHHhhcc-----HHHHHHHHHhhcCCc---hHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcc
Confidence 34555555544332 223 344555443 3455 66777777888899999999999988875 3565
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHh----CCC--CCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q psy17788 290 RVDVWGVYVDMLVKSDRVDLGRQVIQRAVT----QKL--PPKKLKPLYMKWLKLEEQYGDAEAVENV 350 (365)
Q Consensus 290 ~~~~w~~~~~~~~~~g~~~~Ar~~~eral~----~~l--~~~~~~~~~~~~l~~e~~~G~~~~a~~v 350 (365)
-...+.....+....|....+..+...+.. ..+ ..++...||.....+.....|.+-|..|
T Consensus 312 LsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v 378 (625)
T KOG4422|consen 312 LSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQV 378 (625)
T ss_pred hhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHH
Confidence 444444333333333444445555444443 112 2234556777777777766676655544
No 369
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=83.70 E-value=29 Score=32.42 Aligned_cols=118 Identities=18% Similarity=0.102 Sum_probs=79.4
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH-----cCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCC
Q psy17788 198 AQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLR-----LGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGD 272 (365)
Q Consensus 198 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~-----~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~ 272 (365)
+-++++..++.+++.... +.-..+--.++.++-. .-++.....+|+-....-|+. .|. .+-+....+.--
T Consensus 270 ~lI~eg~all~rA~~~~~--pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSP-vV~--LNRAVAla~~~G 344 (415)
T COG4941 270 ALIDEGLALLDRALASRR--PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSP-VVT--LNRAVALAMREG 344 (415)
T ss_pred HHHHHHHHHHHHHHHcCC--CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCC-eEe--ehHHHHHHHhhh
Confidence 346777888888887652 2222333333333332 236677788888777776763 222 233444555556
Q ss_pred HHHHHHHHHHHHHh--CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788 273 ASRAQALLEHTLTS--YPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ 320 (365)
Q Consensus 273 ~e~A~~~fe~~l~~--~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~ 320 (365)
++.|..+.+-+... .......|..-++++.+.|..++|+..|+|++.+
T Consensus 345 p~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~L 394 (415)
T COG4941 345 PAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIAL 394 (415)
T ss_pred HHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHh
Confidence 78888888877665 4455678899999999999999999999999985
No 370
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=83.22 E-value=3.2 Score=23.76 Aligned_cols=28 Identities=7% Similarity=0.090 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q psy17788 186 VYMNMMEIYAASAQIRDLESTVKLLLKK 213 (365)
Q Consensus 186 ~~~~l~~~~~~~g~~~~A~~~~~~al~~ 213 (365)
.|..++..+.+.|+++.|..+|+.+.+.
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~ 30 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQ 30 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4667778888888888888888887763
No 371
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=82.47 E-value=70 Score=33.78 Aligned_cols=193 Identities=12% Similarity=0.050 Sum_probs=96.9
Q ss_pred HHHhCCHHHHHHHHHHHHHcCCC---------HHHHHHH-HHHHHHhCCHHHHHHHHHHHHHHhcCC--CCcHHHHHHHH
Q psy17788 161 EHLYGTKESLQECLHEAVRCNDE---------TKVYMNM-MEIYAASAQIRDLESTVKLLLKKAGQT--HSSVNIYLQCA 228 (365)
Q Consensus 161 ~~~~g~~~~a~~v~~ral~~~~~---------~~~~~~l-~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~a 228 (365)
......+..|..+..++-..-+. ...|..+ +.+-...|+++.+.++.+.++..-+.. .....+....+
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 33445666776666666443321 1134444 445556788888888888888765211 22344566667
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCc--chHHHHH--HHHHHHHHcCCHHHHHH--HH----HHHHHhCCCChhHHHHHH
Q psy17788 229 TLLLRLGQKDTARHILQRGLNNLPPA--VHVTLIT--RFALAENKFGDASRAQA--LL----EHTLTSYPARVDVWGVYV 298 (365)
Q Consensus 229 ~~~~~~g~~~~A~~~l~ral~~~p~~--~~~~~~~--~~a~~~~~~g~~e~A~~--~f----e~~l~~~P~~~~~w~~~~ 298 (365)
.+..-.|++++|+.+.+.+.+..-.. .+..+|. .-+.++...|....+.. .| +.-+..-|-..-....++
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 77777888888888887777652211 1222333 33555666773322211 11 222222333222333333
Q ss_pred HHHHhc----CChHHHHHHHHHHHhCCCCCCCcHHHHH---HHHHHHHhcCCHHHHHHHHHHHHH
Q psy17788 299 DMLVKS----DRVDLGRQVIQRAVTQKLPPKKLKPLYM---KWLKLEEQYGDAEAVENVKKEIEQ 356 (365)
Q Consensus 299 ~~~~~~----g~~~~Ar~~~eral~~~l~~~~~~~~~~---~~l~~e~~~G~~~~a~~v~~kA~~ 356 (365)
.++... +...+++.-++-... ..+.....+. ..+..+...||.+.+-..+.....
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~---~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~ 646 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSV---YTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELER 646 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhh---cccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 333222 233333433333322 1122223333 344566678999888776655443
No 372
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=82.16 E-value=27 Score=32.59 Aligned_cols=108 Identities=17% Similarity=0.189 Sum_probs=58.7
Q ss_pred HHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHH
Q psy17788 195 AASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDAS 274 (365)
Q Consensus 195 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e 274 (365)
...|....|.++ .+.|. -++...|......+...+++++-..+- +. +..|- -|.-|+..+.+.|...
T Consensus 188 i~~~~~k~A~kl----~k~Fk--v~dkrfw~lki~aLa~~~~w~eL~~fa-~s-kKsPI-----GyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 188 IEMGQEKQAEKL----KKEFK--VPDKRFWWLKIKALAENKDWDELEKFA-KS-KKSPI-----GYEPFVEACLKYGNKK 254 (319)
T ss_pred HHCCCHHHHHHH----HHHcC--CcHHHHHHHHHHHHHhcCCHHHHHHHH-hC-CCCCC-----ChHHHHHHHHHCCCHH
Confidence 345665555444 23331 345667777777777777777665532 21 11121 2334456666777777
Q ss_pred HHHHHHHHHHHhCCCChhHH------HHHHHHHHhcCChHHHHHHHHHH
Q psy17788 275 RAQALLEHTLTSYPARVDVW------GVYVDMLVKSDRVDLGRQVIQRA 317 (365)
Q Consensus 275 ~A~~~fe~~l~~~P~~~~~w------~~~~~~~~~~g~~~~Ar~~~era 317 (365)
+|..+..++ .. ......| ...+....+.++.+.-..+++++
T Consensus 255 eA~~yI~k~-~~-~~rv~~y~~~~~~~~A~~~A~~~kd~~~L~~i~~~~ 301 (319)
T PF04840_consen 255 EASKYIPKI-PD-EERVEMYLKCGDYKEAAQEAFKEKDIDLLKQILKRC 301 (319)
T ss_pred HHHHHHHhC-Ch-HHHHHHHHHCCCHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 777776662 11 2333333 33344455667777666666666
No 373
>KOG3783|consensus
Probab=81.84 E-value=58 Score=32.37 Aligned_cols=77 Identities=10% Similarity=-0.005 Sum_probs=42.3
Q ss_pred hcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHH
Q psy17788 106 LGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETK 185 (365)
Q Consensus 106 ~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~ 185 (365)
...|+++...+.++..+...|+.+.|..+++.++. +..+ .....-+| ..+-+..-..++..|-..+......++-..
T Consensus 261 ~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~-~~~k-Q~~~l~~f-E~aw~~v~~~~~~~aad~~~~L~desdWS~ 337 (546)
T KOG3783|consen 261 KRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP-IRMK-QVKSLMVF-ERAWLSVGQHQYSRAADSFDLLRDESDWSH 337 (546)
T ss_pred HhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc-HHHH-HHHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHhhhhhhH
Confidence 34688877777788888777778888888887766 1111 11112222 122222222245566666666655554333
No 374
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=81.37 E-value=54 Score=31.77 Aligned_cols=27 Identities=11% Similarity=0.036 Sum_probs=18.0
Q ss_pred HHHHH-HHHHHhcCChHHHHHHHHHHHh
Q psy17788 293 VWGVY-VDMLVKSDRVDLGRQVIQRAVT 319 (365)
Q Consensus 293 ~w~~~-~~~~~~~g~~~~Ar~~~eral~ 319 (365)
+|..+ |.-+.+.|....|..+|.+|+.
T Consensus 371 f~~vLAg~~~~~~~~~~~a~rcy~~a~~ 398 (414)
T PF12739_consen 371 FHMVLAGHRYSKAGQKKHALRCYKQALQ 398 (414)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44444 4566777777777777777765
No 375
>PRK12798 chemotaxis protein; Reviewed
Probab=81.27 E-value=53 Score=31.62 Aligned_cols=191 Identities=15% Similarity=0.129 Sum_probs=128.9
Q ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-HcCChHHH
Q psy17788 162 HLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLL-RLGQKDTA 240 (365)
Q Consensus 162 ~~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~-~~g~~~~A 240 (365)
.+-|+...+..++.+-.. ++...-+.-+-+-+-.|+..++.+.+..+--... |...-.++.++..-. ...++..|
T Consensus 92 lSGGnP~vlr~L~~~d~~--~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l--~~~lg~~laLv~a~l~~~~dP~~A 167 (421)
T PRK12798 92 LSGGNPATLRKLLARDKL--GNFDQRLADGALAYLSGRGREARKLLAGVAPEYL--PAELGAYLALVQGNLMVATDPATA 167 (421)
T ss_pred hcCCCHHHHHHHHHcCCC--ChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhc--CchhhhHHHHHHHHHhcccCHHHH
Confidence 445677777777666432 2222222222333457999999998877655432 555555666655443 45689999
Q ss_pred HHHHHHHHhcCCCcchHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH---HHHHHHHHHhcCChHHHHHHHHH
Q psy17788 241 RHILQRGLNNLPPAVHVT-LITRFALAENKFGDASRAQALLEHTLTSYPARVDV---WGVYVDMLVKSDRVDLGRQVIQR 316 (365)
Q Consensus 241 ~~~l~ral~~~p~~~~~~-~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~---w~~~~~~~~~~g~~~~Ar~~~er 316 (365)
..+|+.+--..|.---.. .+..-..+....|+.+++..+-.+.+..|.+++.+ |..++....+.++-..- ..+..
T Consensus 168 l~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~-~~l~~ 246 (421)
T PRK12798 168 LKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRD-ARLVE 246 (421)
T ss_pred HHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccH-HHHHH
Confidence 999999988888732111 33333445568899999999999999999888655 45555666666533322 34777
Q ss_pred HHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy17788 317 AVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYV 358 (365)
Q Consensus 317 al~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v 358 (365)
++. .+++.....+|.+...--.-.|..+-+...-.+|+...
T Consensus 247 ~ls-~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~ 287 (421)
T PRK12798 247 ILS-FMDPERQRELYLRIARAALIDGKTELARFASERALKLA 287 (421)
T ss_pred HHH-hcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhc
Confidence 777 56677777888888887778899999999999998776
No 376
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=81.18 E-value=7.1 Score=35.59 Aligned_cols=62 Identities=6% Similarity=-0.049 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q psy17788 152 NVWTSLLNLEHLYGTKESLQECLHEAVRCND-ETKVYMNMMEIYAASAQIRDLESTVKLLLKK 213 (365)
Q Consensus 152 ~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 213 (365)
++....+..+...|.+..|..+.+++++++| +...|..+..++...|+--.+.+.|+++-+.
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~v 342 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEV 342 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence 3444455566777888888999999988888 4567788888888888888888888777553
No 377
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=80.65 E-value=14 Score=33.26 Aligned_cols=61 Identities=13% Similarity=-0.041 Sum_probs=38.3
Q ss_pred HHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcch
Q psy17788 193 IYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVH 256 (365)
Q Consensus 193 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~ 256 (365)
.+.+.++++.|..+-++.+..+ |.++.-|..-|.+|.+.|.+..|+.-+++.+...|+.+.
T Consensus 190 ~~~~e~~~~~al~~~~r~l~l~---P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 190 ALLRELQWELALRVAERLLDLN---PEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred HHHHhhchHHHHHHHHHHHhhC---CCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence 3455566666666666666665 666666666666666666666666666666666666543
No 378
>KOG3807|consensus
Probab=79.77 E-value=53 Score=30.68 Aligned_cols=119 Identities=17% Similarity=0.204 Sum_probs=71.4
Q ss_pred HHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q psy17788 115 WVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIY 194 (365)
Q Consensus 115 w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~ 194 (365)
=...|....+..+...-+.....||...| +....++-++. ....++..|.++|++|++.... .|
T Consensus 187 e~eIMQ~AWRERnp~~RI~~A~~ALeIN~-----eCA~AyvLLAE--EEa~Ti~~AE~l~k~ALka~e~--~y------- 250 (556)
T KOG3807|consen 187 EDEIMQKAWRERNPPARIKAAYQALEINN-----ECATAYVLLAE--EEATTIVDAERLFKQALKAGET--IY------- 250 (556)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHhcCc-----hhhhHHHhhhh--hhhhhHHHHHHHHHHHHHHHHH--HH-------
Confidence 34555556666666666777778888777 44444443333 3344788899999999875321 11
Q ss_pred HHhCCHHHHHHHHHHHHHHhcCCCCcHHHH--HHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q psy17788 195 AASAQIRDLESTVKLLLKKAGQTHSSVNIY--LQCATLLLRLGQKDTARHILQRGLNNLPP 253 (365)
Q Consensus 195 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~a~~~~~~g~~~~A~~~l~ral~~~p~ 253 (365)
.++...+.--..++...++ ..+..+| ..++.+..+.|+..+|.+.|....+..|-
T Consensus 251 r~sqq~qh~~~~~da~~rR----Dtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl 307 (556)
T KOG3807|consen 251 RQSQQCQHQSPQHEAQLRR----DTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPL 307 (556)
T ss_pred hhHHHHhhhccchhhhhhc----ccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccH
Confidence 1111111111122223333 3444444 45677788899999999999988877775
No 379
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=79.64 E-value=2.8 Score=22.93 Aligned_cols=18 Identities=39% Similarity=0.368 Sum_probs=8.8
Q ss_pred HHHHHHHcCCHHHHHHHH
Q psy17788 263 FALAENKFGDASRAQALL 280 (365)
Q Consensus 263 ~a~~~~~~g~~e~A~~~f 280 (365)
+|..+...|++++|+.++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 344444555555554444
No 380
>PRK12798 chemotaxis protein; Reviewed
Probab=79.11 E-value=63 Score=31.14 Aligned_cols=219 Identities=16% Similarity=0.100 Sum_probs=130.5
Q ss_pred HHHHhhcCCC-CHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHH-HhCCHHHHHHHHHHHH
Q psy17788 101 FDRMLLGQPN-NSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEH-LYGTKESLQECLHEAV 178 (365)
Q Consensus 101 fe~~l~~~p~-~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~-~~g~~~~a~~v~~ral 178 (365)
.+.++..++. +.+.-+..+..-.-.|+-.+|+..+...- | ..........++++.-.. ...+...|+..|..+-
T Consensus 100 lr~L~~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~---~-~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aR 175 (421)
T PRK12798 100 LRKLLARDKLGNFDQRLADGALAYLSGRGREARKLLAGVA---P-EYLPAELGAYLALVQGNLMVATDPATALKLLDQAR 175 (421)
T ss_pred HHHHHHcCCCChhhHHHHHHHHHHHcCCHHHHHHHhhcCC---h-hhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHH
Confidence 3444444432 33444444444455677777766554321 1 111123344444444322 3347888999999886
Q ss_pred HcCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc
Q psy17788 179 RCNDET----KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPA 254 (365)
Q Consensus 179 ~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~ 254 (365)
-..|.. .+.-+-+-+-.+.|+.+++..+-.+.+.+|..++---+.+..++..+.+.++-.. ...+..+|...+..
T Consensus 176 LlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~-~~~l~~~ls~~d~~ 254 (421)
T PRK12798 176 LLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIR-DARLVEILSFMDPE 254 (421)
T ss_pred HhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcccccc-HHHHHHHHHhcCch
Confidence 666642 2444446666788999999999999999994334444567777777777664322 23477777776655
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hhHHHHH-HHHHHhcCChHHHHHHHHHHHhCCCCC
Q psy17788 255 VHVTLITRFALAENKFGDASRAQALLEHTLTSYPAR---VDVWGVY-VDMLVKSDRVDLGRQVIQRAVTQKLPP 324 (365)
Q Consensus 255 ~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~---~~~w~~~-~~~~~~~g~~~~Ar~~~eral~~~l~~ 324 (365)
....+|...+.--.-.|+.+.|+-.-++++..-... ......| +-..+-..+++.+...+..+-..+|++
T Consensus 255 ~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~ 328 (421)
T PRK12798 255 RQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLSE 328 (421)
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCCh
Confidence 567788888888888999999999999998764321 1111222 222233455666666665554434443
No 381
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=78.89 E-value=18 Score=32.39 Aligned_cols=77 Identities=17% Similarity=0.141 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHHhcCCCcc----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------hhHHHHHHHHHHhcCC
Q psy17788 237 KDTARHILQRGLNNLPPAV----HVTLITRFALAENKFGDASRAQALLEHTLTSYPAR------VDVWGVYVDMLVKSDR 306 (365)
Q Consensus 237 ~~~A~~~l~ral~~~p~~~----~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~------~~~w~~~~~~~~~~g~ 306 (365)
....+.++.+|+....... ...+...+|..++..|++++|..+|+.+...+... .++...+..|....|+
T Consensus 154 s~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~ 233 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGD 233 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence 3455677777776654322 23355677888888899999999998887665532 3344555566667777
Q ss_pred hHHHHHH
Q psy17788 307 VDLGRQV 313 (365)
Q Consensus 307 ~~~Ar~~ 313 (365)
.+....+
T Consensus 234 ~~~~l~~ 240 (247)
T PF11817_consen 234 VEDYLTT 240 (247)
T ss_pred HHHHHHH
Confidence 7665544
No 382
>KOG2581|consensus
Probab=78.53 E-value=43 Score=32.14 Aligned_cols=133 Identities=14% Similarity=0.188 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcch-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--
Q psy17788 220 SVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVH-------VTLITRFALAENKFGDASRAQALLEHTLTSYPAR-- 290 (365)
Q Consensus 220 ~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~-------~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~-- 290 (365)
++..++....++...+++.+|..+-+..+........ ..+|..+...+...|+...-+..+...+..-.-+
T Consensus 125 ~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd 204 (493)
T KOG2581|consen 125 EAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHD 204 (493)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCc
Q ss_pred ----hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy17788 291 ----VDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYV 358 (365)
Q Consensus 291 ----~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v 358 (365)
.-+.+.+.++|...+.+++|-.+.-+..- |......-|.+|+.+ .|....++--|.-|.+++
T Consensus 205 ~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~---pe~~snne~ARY~yY---~GrIkaiqldYssA~~~~ 270 (493)
T KOG2581|consen 205 EEGQAVLINLLLRNYLHNKLYDQADKLVSKSVY---PEAASNNEWARYLYY---LGRIKAIQLDYSSALEYF 270 (493)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHhhcccC---ccccccHHHHHHHHH---HhhHHHhhcchhHHHHHH
No 383
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=78.26 E-value=9.4 Score=32.57 Aligned_cols=44 Identities=11% Similarity=0.030 Sum_probs=21.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q psy17788 171 QECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKA 214 (365)
Q Consensus 171 ~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 214 (365)
.+..++.+...|...++..++.++...|+.++|.....++...|
T Consensus 131 ~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ly 174 (193)
T PF11846_consen 131 IEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLY 174 (193)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 33444444444555555555555555555555555555555544
No 384
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=77.96 E-value=30 Score=26.75 Aligned_cols=91 Identities=14% Similarity=0.103 Sum_probs=44.1
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcC----Ch-------HHHHHHHHHHHhcCCCcchHHHH
Q psy17788 192 EIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLG----QK-------DTARHILQRGLNNLPPAVHVTLI 260 (365)
Q Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g----~~-------~~A~~~l~ral~~~p~~~~~~~~ 260 (365)
.-+.+.|+.-+|.++.+.++...+.....+-++..-|.++.... ++ -.+...|.++....|.. ...+
T Consensus 4 ~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~--A~~L 81 (111)
T PF04781_consen 4 KDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDS--AHSL 81 (111)
T ss_pred HHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhH--HHHH
Confidence 33456666777777777776665322222244444455544332 22 23556677777666664 3333
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q psy17788 261 TRFALAENKFGDASRAQALLEHTL 284 (365)
Q Consensus 261 ~~~a~~~~~~g~~e~A~~~fe~~l 284 (365)
..+|.-+-....++++..--+++|
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~L 105 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGL 105 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHh
Confidence 433432222223444444444444
No 385
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=77.81 E-value=82 Score=31.76 Aligned_cols=110 Identities=17% Similarity=0.210 Sum_probs=60.4
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHH
Q psy17788 198 AQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLG--QKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASR 275 (365)
Q Consensus 198 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g--~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~ 275 (365)
|+.++|+...++.+.. .+..-.....+.++...+ ....-..+|++++...|.. ...+-++..++. ....
T Consensus 323 ~~l~eal~~~e~~c~~----~~~~lpi~~~~~lle~~d~~~~~~l~~~~e~~~~~~P~~--~~~le~l~~~~~---~~~~ 393 (547)
T PF14929_consen 323 GRLKEALNELEKFCIS----STCALPIRLRAHLLEYFDQNNSSVLSSCLEDCLKKDPTM--SYSLERLILLHQ---KDYS 393 (547)
T ss_pred ccHHHHHHHHHHhccC----CCccchHHHHHHHHHHhCcccHHHHHHHHHHHhcCCCcH--HHHHHHHHhhhh---hHHH
Confidence 5667776666555432 333333444455555555 4566667888888888873 333333333322 2455
Q ss_pred HHHHHHHH---HHhCCCChhHHHHHHHHHHh-cCChHHHHHHHHHH
Q psy17788 276 AQALLEHT---LTSYPARVDVWGVYVDMLVK-SDRVDLGRQVIQRA 317 (365)
Q Consensus 276 A~~~fe~~---l~~~P~~~~~w~~~~~~~~~-~g~~~~Ar~~~era 317 (365)
+..+++-+ +...| ...+|..|+.++.+ .++.+.-.+-...+
T Consensus 394 ~~~Lle~i~~~l~~~~-s~~iwle~~~~~l~~~~~~~~~~e~~~~~ 438 (547)
T PF14929_consen 394 AEQLLEMIALHLDLVP-SHPIWLEFVSCFLKNPSRFEDKEEDHKSA 438 (547)
T ss_pred HHHHHHHHHHHhhcCC-CchHHHHHHHHHHhccccccccHHHHHHH
Confidence 56666633 23343 36788888888877 44444333333444
No 386
>KOG4318|consensus
Probab=77.61 E-value=1e+02 Score=32.76 Aligned_cols=114 Identities=12% Similarity=0.065 Sum_probs=78.3
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q psy17788 156 SLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQI---RDLESTVKLLLKKAGQTHSSVNIYLQCATLLL 232 (365)
Q Consensus 156 ~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~ 232 (365)
.++..+...|+.+.|..+|.+.- ..|.......++.++.+.+.. -++...-+++-......+.....+..++.+..
T Consensus 712 RLL~sy~~~g~~erA~glwnK~Q-V~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~ 790 (1088)
T KOG4318|consen 712 RLLQSYLEEGRIERASGLWNKDQ-VSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFAT 790 (1088)
T ss_pred HHHHHHHhhhHHHHHHhHHhhCc-CCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHh
Confidence 46667777888888888888753 567777778888888776543 33444444444333222666777888888888
Q ss_pred HcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcC
Q psy17788 233 RLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFG 271 (365)
Q Consensus 233 ~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g 271 (365)
+..+.+.|..+|.|.-..++.. .+.-++.|..+.....
T Consensus 791 q~~qkkaAkk~f~r~eeq~~v~-tad~ls~f~k~L~~nd 828 (1088)
T KOG4318|consen 791 QTEQKKAAKKCFERLEEQLTVS-TADELSDFLKCLVKND 828 (1088)
T ss_pred hHHHHHHHHHHHHHHHHccCCC-cHHHHHHHHHHHHhcC
Confidence 8888888999998887765543 3556666766666554
No 387
>KOG0686|consensus
Probab=77.39 E-value=62 Score=31.09 Aligned_cols=102 Identities=10% Similarity=0.089 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--------cchH
Q psy17788 186 VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPP--------AVHV 257 (365)
Q Consensus 186 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~--------~~~~ 257 (365)
.+..+++.|...|+++.|.+.|-++-.-.....+...+|++...+-.-.|++.....+..+|.+.... ...+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 56777888989999999999998865543222444667888888888889998888888888765200 0013
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh
Q psy17788 258 TLITRFALAENKFGDASRAQALLEHTLTSYPARVD 292 (365)
Q Consensus 258 ~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~ 292 (365)
.... |..+...+.+..|...| |...++..+
T Consensus 232 ~C~a--gLa~L~lkkyk~aa~~f---L~~~~~~~d 261 (466)
T KOG0686|consen 232 KCAA--GLANLLLKKYKSAAKYF---LLAEFDHCD 261 (466)
T ss_pred HHHH--HHHHHHHHHHHHHHHHH---HhCCCCccC
Confidence 3333 44444455666665554 444444443
No 388
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=77.15 E-value=60 Score=29.80 Aligned_cols=99 Identities=18% Similarity=0.223 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHHHcccCHHHHHHHHHHHHhh-ccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---CCC---
Q psy17788 111 NSELWVKYMAYHLQATEIEKARSIARRALTV-INIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRC---NDE--- 183 (365)
Q Consensus 111 ~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~-~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~---~~~--- 183 (365)
-+.+|...+.+|.+.++.+.+.+...+.+.. .... -+.++.+..+.+..-+|+..-+.+.++.+-.. ..+
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg---~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeR 190 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTG---LKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWER 190 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcc---cchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHh
Confidence 3589999999999999998887776666552 1111 45788888888888888755444444444222 211
Q ss_pred ---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q psy17788 184 ---TKVYMNMMEIYAASAQIRDLESTVKLLLKKA 214 (365)
Q Consensus 184 ---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 214 (365)
.++|. +-+.....+|.+|-.++-..+..|
T Consensus 191 rNRyK~Y~--Gi~~m~~RnFkeAa~Ll~d~l~tF 222 (412)
T COG5187 191 RNRYKVYK--GIFKMMRRNFKEAAILLSDILPTF 222 (412)
T ss_pred hhhHHHHH--HHHHHHHHhhHHHHHHHHHHhccc
Confidence 12332 333445678999999999888877
No 389
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=77.15 E-value=85 Score=31.60 Aligned_cols=30 Identities=20% Similarity=0.216 Sum_probs=13.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q psy17788 264 ALAENKFGDASRAQALLEHTLTSYPARVDV 293 (365)
Q Consensus 264 a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~ 293 (365)
+++..-.|+..++....++++...|+++.+
T Consensus 149 ~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~ 178 (620)
T COG3914 149 GRYLKLLGRTAEAELALERAVDLLPKYPRV 178 (620)
T ss_pred HHHHHHhccHHHHHHHHHHHHHhhhhhhhh
Confidence 444444444445555555554444444333
No 390
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=76.88 E-value=12 Score=35.02 Aligned_cols=63 Identities=16% Similarity=0.204 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC--HHHHHHHHHHH
Q psy17788 130 KARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE--TKVYMNMMEIY 194 (365)
Q Consensus 130 ~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~--~~~~~~l~~~~ 194 (365)
+.+.++...++.+|.. ......|+.++.++...|.++.++.+|+.|+..... ..+-..+++++
T Consensus 121 ei~~~L~~li~~IP~A--~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL 185 (353)
T PF15297_consen 121 EILATLSDLIKNIPDA--KKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDIL 185 (353)
T ss_pred HHHHHHHHHHhcCchH--HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 4444555555555522 123466777777777777777777777777655422 23334444443
No 391
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=76.22 E-value=68 Score=29.95 Aligned_cols=80 Identities=13% Similarity=0.113 Sum_probs=56.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCh
Q psy17788 228 ATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRV 307 (365)
Q Consensus 228 a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~ 307 (365)
...+...|+...|..+-.. ++ .|. -.+|.--...+...|++++-..+.. .-+.+-.|--+++...+.|+.
T Consensus 184 i~~li~~~~~k~A~kl~k~-Fk-v~d---krfw~lki~aLa~~~~w~eL~~fa~-----skKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKE-FK-VPD---KRFWWLKIKALAENKDWDELEKFAK-----SKKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHCCCHHHHHHHHHH-cC-CcH---HHHHHHHHHHHHhcCCHHHHHHHHh-----CCCCCCChHHHHHHHHHCCCH
Confidence 3445667888888776333 32 343 3455555778889999987665432 245678889999999999999
Q ss_pred HHHHHHHHHH
Q psy17788 308 DLGRQVIQRA 317 (365)
Q Consensus 308 ~~Ar~~~era 317 (365)
.+|..+..++
T Consensus 254 ~eA~~yI~k~ 263 (319)
T PF04840_consen 254 KEASKYIPKI 263 (319)
T ss_pred HHHHHHHHhC
Confidence 9999999983
No 392
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=75.96 E-value=6.6 Score=24.48 Aligned_cols=33 Identities=15% Similarity=0.328 Sum_probs=29.1
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHH
Q psy17788 99 DGFDRMLLGQPNNSELWVKYMAYHLQATEIEKA 131 (365)
Q Consensus 99 ~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A 131 (365)
..|.++|..+|++...+.-|+.++...|+...|
T Consensus 3 ~all~AI~~~P~ddt~RLvYADWL~e~gdp~ra 35 (42)
T TIGR02996 3 EALLRAILAHPDDDTPRLVYADWLDEHGDPARA 35 (42)
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHcCCHHHH
Confidence 457889999999999999999999999988654
No 393
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=75.93 E-value=21 Score=38.35 Aligned_cols=100 Identities=12% Similarity=0.019 Sum_probs=67.7
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHc----C---ChHHHHHHHHHHHhcCCCcchHHHHHHH
Q psy17788 191 MEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRL----G---QKDTARHILQRGLNNLPPAVHVTLITRF 263 (365)
Q Consensus 191 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~----g---~~~~A~~~l~ral~~~p~~~~~~~~~~~ 263 (365)
-+.+.....+++|...|++....|++......+....|-.++.. | .+++|+.-|++... .|..+- =|..-
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~ 558 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPL--EYLGK 558 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCch--HHHhH
Confidence 34566667788999999999888854444555666666555442 3 35667777766432 343322 23444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q psy17788 264 ALAENKFGDASRAQALLEHTLTSYPARVDV 293 (365)
Q Consensus 264 a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~ 293 (365)
|.+|.++|++++-...|+-+++.||+.+.+
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 559 ALVYQRLGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence 777888899999999999999999887665
No 394
>KOG0276|consensus
Probab=75.88 E-value=42 Score=33.91 Aligned_cols=67 Identities=18% Similarity=0.153 Sum_probs=35.0
Q ss_pred ChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy17788 97 SPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHE 176 (365)
Q Consensus 97 a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~r 176 (365)
+....+++|...|+... .-...++.|+++.|..+...+-. ..=|-.+.+.....|+...|.+.|.+
T Consensus 626 ~~g~~e~AL~~s~D~d~----rFelal~lgrl~iA~~la~e~~s----------~~Kw~~Lg~~al~~~~l~lA~EC~~~ 691 (794)
T KOG0276|consen 626 SQGMKEQALELSTDPDQ----RFELALKLGRLDIAFDLAVEANS----------EVKWRQLGDAALSAGELPLASECFLR 691 (794)
T ss_pred hccchHhhhhcCCChhh----hhhhhhhcCcHHHHHHHHHhhcc----------hHHHHHHHHHHhhcccchhHHHHHHh
Confidence 33445555555444321 22334555666666555443211 23366666666666666666666666
Q ss_pred H
Q psy17788 177 A 177 (365)
Q Consensus 177 a 177 (365)
|
T Consensus 692 a 692 (794)
T KOG0276|consen 692 A 692 (794)
T ss_pred h
Confidence 5
No 395
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=74.69 E-value=6.3 Score=24.93 Aligned_cols=24 Identities=4% Similarity=0.256 Sum_probs=14.9
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHH
Q psy17788 189 NMMEIYAASAQIRDLESTVKLLLK 212 (365)
Q Consensus 189 ~l~~~~~~~g~~~~A~~~~~~al~ 212 (365)
.++..|...|+.+.|+++++..+.
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Confidence 455666666666666666666663
No 396
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=74.24 E-value=14 Score=26.64 Aligned_cols=35 Identities=14% Similarity=0.123 Sum_probs=23.4
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q psy17788 267 ENKFGDASRAQALLEHTLTSYPARVDVWGVYVDML 301 (365)
Q Consensus 267 ~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~ 301 (365)
++.....+.|...+.++|...++..+-|..++-+.
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~ 50 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDREDRFRVLGYLI 50 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 34556667777777777777777777666665443
No 397
>PRK11619 lytic murein transglycosylase; Provisional
Probab=74.19 E-value=1.1e+02 Score=31.57 Aligned_cols=189 Identities=13% Similarity=0.077 Sum_probs=104.1
Q ss_pred HHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH
Q psy17788 122 HLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYG-TKESLQECLHEAVRCNDETKVYMNMMEIYAASAQI 200 (365)
Q Consensus 122 ~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g-~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~ 200 (365)
.+...+.+.|...+.+......+..+ ....+|..++ ...... ....+...+..+.....+..++-..+.+-...+++
T Consensus 251 Rlar~d~~~A~~~~~~~~~~~~~~~~-~~~~~~~~lA-~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw 328 (644)
T PRK11619 251 SVARQDAENARLMIPSLVRAQKLNED-QRQELRDIVA-WRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDR 328 (644)
T ss_pred HHHHhCHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHH-HHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCH
Confidence 34455667777777765444433211 2233343333 222222 14455555555443333333332223344467788
Q ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------------C----C--cchH----
Q psy17788 201 RDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNL-------------P----P--AVHV---- 257 (365)
Q Consensus 201 ~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~-------------p----~--~~~~---- 257 (365)
+.+...+..+-... .......+=+|..+...|+.++|..+|+++.... | . .+..
T Consensus 329 ~~~~~~i~~L~~~~---~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~ 405 (644)
T PRK11619 329 RGLNTWLARLPMEA---KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDSAL 405 (644)
T ss_pred HHHHHHHHhcCHhh---ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhhhh
Confidence 77777777765544 4455556666677677888888888888864420 0 0 0000
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q psy17788 258 --TLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRA 317 (365)
Q Consensus 258 --~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~era 317 (365)
.-.+.-+..+...|....|+..+..++.. . +..-...++.+-...|..+.+.....++
T Consensus 406 ~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~-~-~~~~~~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 406 TQGPEMARVRELMYWNMDNTARSEWANLVAS-R-SKTEQAQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred ccChHHHHHHHHHHCCCHHHHHHHHHHHHhc-C-CHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence 01123355566778888888777777764 2 3445566667777777777776665544
No 398
>KOG0686|consensus
Probab=74.15 E-value=17 Score=34.69 Aligned_cols=60 Identities=10% Similarity=0.056 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q psy17788 154 WTSLLNLEHLYGTKESLQECLHEAVRCNDET----KVYMNMMEIYAASAQIRDLESTVKLLLKK 213 (365)
Q Consensus 154 w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 213 (365)
...++..+...|+.+.|.+.|-|+-.++.+. .+|..++.+-.-.|++......-.++...
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 3445566777788888888888877666543 35666666666778888888877777654
No 399
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=73.98 E-value=47 Score=31.48 Aligned_cols=46 Identities=17% Similarity=0.112 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy17788 127 EIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEA 177 (365)
Q Consensus 127 ~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ra 177 (365)
.+-+|..+++.++...| .+..+-+-++.+|...|..+.|...|...
T Consensus 198 ~l~~Ai~lLE~~l~~s~-----~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 198 YLLQAIALLEHALKKSP-----HNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHcCC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 35567777777777667 45666666777777777777777777654
No 400
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=73.86 E-value=7.5 Score=24.58 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=17.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHh
Q psy17788 225 LQCATLLLRLGQKDTARHILQRGLN 249 (365)
Q Consensus 225 ~~~a~~~~~~g~~~~A~~~l~ral~ 249 (365)
+.+|..|...|+.+.|+.+++..+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4567777777777777777777663
No 401
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=73.59 E-value=90 Score=30.16 Aligned_cols=168 Identities=13% Similarity=0.079 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHH--------HHHHHHHHHHHhCCHHHHHHHHHHHHHcC---
Q psy17788 113 ELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLN--------VWTSLLNLEHLYGTKESLQECLHEAVRCN--- 181 (365)
Q Consensus 113 ~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~--------~w~~~~~l~~~~g~~~~a~~v~~ral~~~--- 181 (365)
..-+.+...+.+..++.+-.+..++.........+.+..+ ..+++++++...|++..|+++++-. ..+
T Consensus 76 ~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~i-dl~~~~ 154 (404)
T PF10255_consen 76 YSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENI-DLNKKG 154 (404)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhcc-Ccccch
Confidence 3334445555566666665555554322111111111112 2456777888899999999987763 111
Q ss_pred -----C--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q psy17788 182 -----D--ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSV-NIYLQCATLLLRLGQKDTARHILQRGLNNLPP 253 (365)
Q Consensus 182 -----~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~ 253 (365)
| ...++..++-.|.-.+++.+|+.+|...+--.. ... .....-.+.-.-.+..++...++--++...|.
T Consensus 155 l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~---r~k~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~ 231 (404)
T PF10255_consen 155 LYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQ---RTKNQYHQRSYQYDQINKKNEQMYALLAICLSLCPQ 231 (404)
T ss_pred hhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhhccccchhhHHHhHHHHHHHHHHHHHHhCCC
Confidence 1 234777888889999999999999998886431 111 00111111111123455566666666666665
Q ss_pred cch----HHHHHHHHHHHH--HcCCHHHHHHHHHHHH
Q psy17788 254 AVH----VTLITRFALAEN--KFGDASRAQALLEHTL 284 (365)
Q Consensus 254 ~~~----~~~~~~~a~~~~--~~g~~e~A~~~fe~~l 284 (365)
... ..+--+++.=.. +.|+.+.-..+|..+-
T Consensus 232 ~lde~i~~~lkeky~ek~~kmq~gd~~~f~elF~~ac 268 (404)
T PF10255_consen 232 RLDESISSQLKEKYGEKMEKMQRGDEEAFEELFSFAC 268 (404)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhhC
Confidence 322 112223343222 3566666666666554
No 402
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=73.39 E-value=18 Score=33.82 Aligned_cols=53 Identities=15% Similarity=0.157 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q psy17788 200 IRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLP 252 (365)
Q Consensus 200 ~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p 252 (365)
-+++..++..+++..+.....++.|+.+|.++-..|.++..+.+|+.|+....
T Consensus 119 ~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agA 171 (353)
T PF15297_consen 119 KEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGA 171 (353)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCC
Confidence 45666666666666522233455677777777777766666777776665543
No 403
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=72.86 E-value=45 Score=26.33 Aligned_cols=20 Identities=20% Similarity=0.192 Sum_probs=9.3
Q ss_pred HHHHHHcCCHHHHHHHHHHH
Q psy17788 264 ALAENKFGDASRAQALLEHT 283 (365)
Q Consensus 264 a~~~~~~g~~e~A~~~fe~~ 283 (365)
+..+...|+.++|...|+.+
T Consensus 107 a~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 107 AVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhcCChHHHHHHHHHH
Confidence 33344455555555555444
No 404
>KOG1839|consensus
Probab=72.52 E-value=70 Score=35.21 Aligned_cols=133 Identities=17% Similarity=0.163 Sum_probs=84.7
Q ss_pred HHHHHHHcccCHHHHHHHHHHHHhhccCcc---ccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-------CC--H
Q psy17788 117 KYMAYHLQATEIEKARSIARRALTVINIRN---EEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCN-------DE--T 184 (365)
Q Consensus 117 ~~~~~~~~~~~~e~A~~~~~raL~~~p~~~---~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~-------~~--~ 184 (365)
.-+...+..|.+..|++ .-+++......- .++....+..++.++...|+.+.|+..-.+|+-.+ +. .
T Consensus 937 e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~ 1015 (1236)
T KOG1839|consen 937 EQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTK 1015 (1236)
T ss_pred hhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHH
Confidence 33444566777777777 434443222000 01445566777778888888888887766664332 22 2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHh----cC-CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy17788 185 KVYMNMMEIYAASAQIRDLESTVKLLLKKA----GQ-THSSVNIYLQCATLLLRLGQKDTARHILQRGLNN 250 (365)
Q Consensus 185 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----~~-~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~ 250 (365)
..|..++.++...++...|...+.++.... +. +|.-..+..++..++...+.++.|..+++.|+..
T Consensus 1016 ~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~ 1086 (1236)
T KOG1839|consen 1016 LAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAK 1086 (1236)
T ss_pred HHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 245566666666677777888887777653 22 3555666677777888888889999988888874
No 405
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=71.46 E-value=22 Score=30.30 Aligned_cols=47 Identities=28% Similarity=0.364 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17788 239 TARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYP 288 (365)
Q Consensus 239 ~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P 288 (365)
..+...++.+...|. ..++.+++.++...|+.++|+.+.+++...+|
T Consensus 129 ~~~~~a~~~l~~~P~---~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 129 AYIEWAERLLRRRPD---PNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHhCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 334445555555565 56777788888888888888888888888888
No 406
>KOG1310|consensus
Probab=71.35 E-value=22 Score=35.26 Aligned_cols=89 Identities=16% Similarity=0.045 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHH
Q psy17788 199 QIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLG---QKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASR 275 (365)
Q Consensus 199 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g---~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~ 275 (365)
....++..|.+++... |.....+.+++.++++.+ +.-.|+.=.-.|+..+|. +...+..++.++...+.+.+
T Consensus 389 ~~~~~i~~~s~a~q~~---~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s--~~kah~~la~aL~el~r~~e 463 (758)
T KOG1310|consen 389 IVSGAISHYSRAIQYV---PDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPS--IQKAHFRLARALNELTRYLE 463 (758)
T ss_pred HHHHHHHHHHHHhhhc---cchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChH--HHHHHHHHHHHHHHHhhHHH
Confidence 3456777888888887 888888888888888764 333444444455666666 45566777888888888888
Q ss_pred HHHHHHHHHHhCCCChh
Q psy17788 276 AQALLEHTLTSYPARVD 292 (365)
Q Consensus 276 A~~~fe~~l~~~P~~~~ 292 (365)
|.....-+...+|.+..
T Consensus 464 al~~~~alq~~~Ptd~a 480 (758)
T KOG1310|consen 464 ALSCHWALQMSFPTDVA 480 (758)
T ss_pred hhhhHHHHhhcCchhhh
Confidence 88888777777885543
No 407
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=70.98 E-value=61 Score=31.27 Aligned_cols=101 Identities=12% Similarity=0.058 Sum_probs=50.2
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHH----HhcC-CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHH
Q psy17788 189 NMMEIYAASAQIRDLESTVKLLLK----KAGQ-THSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRF 263 (365)
Q Consensus 189 ~l~~~~~~~g~~~~A~~~~~~al~----~~~~-~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~ 263 (365)
.+..++.-.|++..|+++++-+-- .+.. .+....+++..|-.|+..+++.+|.+.|..+|....+..+ ....+-
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~-~~~~~~ 205 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKN-QYHQRS 205 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhcccc
Confidence 334455566777777776654310 0000 1344556666666677777777777777666543322110 001111
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy17788 264 ALAENKFGDASRAQALLEHTLTSYPAR 290 (365)
Q Consensus 264 a~~~~~~g~~e~A~~~fe~~l~~~P~~ 290 (365)
.+...-.+..|+...++--++...|.+
T Consensus 206 ~q~d~i~K~~eqMyaLlAic~~l~p~~ 232 (404)
T PF10255_consen 206 YQYDQINKKNEQMYALLAICLSLCPQR 232 (404)
T ss_pred chhhHHHhHHHHHHHHHHHHHHhCCCC
Confidence 222222344555566665566666643
No 408
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=70.84 E-value=46 Score=29.66 Aligned_cols=85 Identities=13% Similarity=0.160 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHHHhcC---CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc----chHHHHHHHHHHHHHcC
Q psy17788 199 QIRDLESTVKLLLKKAGQ---THSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPA----VHVTLITRFALAENKFG 271 (365)
Q Consensus 199 ~~~~A~~~~~~al~~~~~---~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~----~~~~~~~~~a~~~~~~g 271 (365)
.....++++.+++..|.. ..--..+-..+|..|+..|+++.|..+|+.+....... ....++..+..|....|
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 345667788888777621 12235567788999999999999999999996654321 12346667788888899
Q ss_pred CHHHHHHHHHHH
Q psy17788 272 DASRAQALLEHT 283 (365)
Q Consensus 272 ~~e~A~~~fe~~ 283 (365)
+.+....+-=++
T Consensus 233 ~~~~~l~~~leL 244 (247)
T PF11817_consen 233 DVEDYLTTSLEL 244 (247)
T ss_pred CHHHHHHHHHHH
Confidence 988776654433
No 409
>KOG0687|consensus
Probab=70.48 E-value=94 Score=29.04 Aligned_cols=101 Identities=9% Similarity=0.164 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHH---HHHHHHHHHc----CChHHHHHHHHHHHhcCCCcchH
Q psy17788 185 KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIY---LQCATLLLRL----GQKDTARHILQRGLNNLPPAVHV 257 (365)
Q Consensus 185 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~a~~~~~~----g~~~~A~~~l~ral~~~p~~~~~ 257 (365)
.++.+.+.+|++.|+.+.|.+.+.+...+......-.++. +.+|.+|..+ ...+.|..++++.=.-.-.+ ..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrN-Rl 183 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRN-RL 183 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhh-hH
Confidence 4666777777777777777776666655432112223333 2333333332 23344444444422111111 24
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17788 258 TLITRFALAENKFGDASRAQALLEHTLTSYP 288 (365)
Q Consensus 258 ~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P 288 (365)
.+|. |.......++..|-.+|-.++..+.
T Consensus 184 KvY~--Gly~msvR~Fk~Aa~Lfld~vsTFt 212 (393)
T KOG0687|consen 184 KVYQ--GLYCMSVRNFKEAADLFLDSVSTFT 212 (393)
T ss_pred HHHH--HHHHHHHHhHHHHHHHHHHHccccc
Confidence 4444 6666666677777777766665544
No 410
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=69.32 E-value=1e+02 Score=29.13 Aligned_cols=46 Identities=22% Similarity=0.150 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q psy17788 272 DASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRA 317 (365)
Q Consensus 272 ~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~era 317 (365)
..-+|..++|.++...|.++.+-..++.+|...|-...|...|...
T Consensus 198 ~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 198 YLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 3458999999999999999999999999999999999998888643
No 411
>KOG1920|consensus
Probab=69.30 E-value=1.4e+02 Score=32.84 Aligned_cols=26 Identities=4% Similarity=-0.070 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy17788 186 VYMNMMEIYAASAQIRDLESTVKLLL 211 (365)
Q Consensus 186 ~~~~l~~~~~~~g~~~~A~~~~~~al 211 (365)
+|..+++.+...+.+++|.-.|++.-
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~G 966 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCG 966 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhc
Confidence 55566666666666666666555443
No 412
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=69.15 E-value=1.1e+02 Score=29.31 Aligned_cols=60 Identities=13% Similarity=0.025 Sum_probs=36.8
Q ss_pred HHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHH--HhCCHHHHHHHHHHHHHc
Q psy17788 118 YMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEH--LYGTKESLQECLHEAVRC 180 (365)
Q Consensus 118 ~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~--~~g~~~~a~~v~~ral~~ 180 (365)
.+.-....+++..|..+++.++...|.+.. ...+..+...+. ..-++.+|.+.++..+..
T Consensus 137 ~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~---~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 137 RAKELFNRYDYGAAARILEELLRRLPGREE---YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCchhh---HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 333446888899999999888876564321 233333333332 223677888888887654
No 413
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=68.55 E-value=18 Score=21.72 Aligned_cols=20 Identities=25% Similarity=0.235 Sum_probs=7.8
Q ss_pred HHHHHHHHHHcCChHHHHHH
Q psy17788 224 YLQCATLLLRLGQKDTARHI 243 (365)
Q Consensus 224 ~~~~a~~~~~~g~~~~A~~~ 243 (365)
|..+|-.+...|++++|+.+
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 33334444444444444444
No 414
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=68.17 E-value=93 Score=28.11 Aligned_cols=148 Identities=11% Similarity=-0.003 Sum_probs=100.7
Q ss_pred hCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH----cC
Q psy17788 164 YGTKESLQECLHEAVRCNDETKVYMNMMEIYAAS----AQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLR----LG 235 (365)
Q Consensus 164 ~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~----~g 235 (365)
.+.+..+...+..+...... .....++.+|... .+...|...|..+.. ..++.....++.++.. ..
T Consensus 54 ~~~~~~a~~~~~~a~~~~~~-~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~-----~g~~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 54 PPDYAKALKSYEKAAELGDA-AALALLGQMYGAGKGVSRDKTKAADWYRCAAA-----DGLAEALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccHHHHHHHHHHhhhcCCh-HHHHHHHHHHHhccCccccHHHHHHHHHHHhh-----cccHHHHHhHHHHHhcCCCccc
Confidence 34566777777776653322 3445555555543 357889999996665 5578888889999887 34
Q ss_pred ChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHc----C---CHHHHHHHHHHHHHhCCCChhHHHHHHHHHHh----c
Q psy17788 236 QKDTARHILQRGLNNLPPAVHVTLITRFALAENKF----G---DASRAQALLEHTLTSYPARVDVWGVYVDMLVK----S 304 (365)
Q Consensus 236 ~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~----g---~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~----~ 304 (365)
+..+|..+|.+|...--... ......++.++..- + +...|...|.++-... +.+....++.+|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a-~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEA-ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhH-HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCC
Confidence 88999999999987633211 22244556555543 1 2337888888887655 56777778877754 2
Q ss_pred CChHHHHHHHHHHHhC
Q psy17788 305 DRVDLGRQVIQRAVTQ 320 (365)
Q Consensus 305 g~~~~Ar~~~eral~~ 320 (365)
.+..+|...|.++..+
T Consensus 205 ~d~~~A~~wy~~Aa~~ 220 (292)
T COG0790 205 RDLKKAFRWYKKAAEQ 220 (292)
T ss_pred cCHHHHHHHHHHHHHC
Confidence 3889999999999984
No 415
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=67.89 E-value=34 Score=30.95 Aligned_cols=52 Identities=10% Similarity=-0.143 Sum_probs=32.5
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788 268 NKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVT 319 (365)
Q Consensus 268 ~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~ 319 (365)
...+.++.|...-++.+..+|.++.-|.--|-+|...|...-|++-+++.+.
T Consensus 192 ~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~ 243 (269)
T COG2912 192 LRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVE 243 (269)
T ss_pred HHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHH
Confidence 3455666666666666666666666666666666666666666666666555
No 416
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=65.17 E-value=51 Score=29.02 Aligned_cols=52 Identities=4% Similarity=0.002 Sum_probs=31.6
Q ss_pred HhCCHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q psy17788 163 LYGTKESLQECLHEAVRCNDETK-VYMNMMEIYAASAQIRDLESTVKLLLKKA 214 (365)
Q Consensus 163 ~~g~~~~a~~v~~ral~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 214 (365)
..+....++...+.-++.+|... .-..|.++|+-.|++++|..-++.+-...
T Consensus 13 ~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~ 65 (273)
T COG4455 13 DDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLS 65 (273)
T ss_pred HhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcC
Confidence 33456666666666666666543 33455666666777777766666665543
No 417
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=65.09 E-value=91 Score=26.89 Aligned_cols=64 Identities=20% Similarity=0.263 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CHHHHHHH-HHHHHHhCCHHHHHHHHHHHHHHh
Q psy17788 151 LNVWTSLLNLEHLYGTKESLQECLHEAVRCND-ETKVYMNM-MEIYAASAQIRDLESTVKLLLKKA 214 (365)
Q Consensus 151 ~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~-~~~~~~~l-~~~~~~~g~~~~A~~~~~~al~~~ 214 (365)
......++......|+++.|-++|.-.++..+ +....+.+ +.++.+.+......+.|+.+...+
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y 106 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFY 106 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHH
Confidence 44556666677777888888888877776543 22222333 566666665555456666666655
No 418
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=65.04 E-value=27 Score=20.87 Aligned_cols=29 Identities=10% Similarity=0.006 Sum_probs=16.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHH--HHHHhCC
Q psy17788 260 ITRFALAENKFGDASRAQALLE--HTLTSYP 288 (365)
Q Consensus 260 ~~~~a~~~~~~g~~e~A~~~fe--~~l~~~P 288 (365)
+..+|-.+...|++++|+.+|+ -+...+|
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 4555666666677777777633 4444444
No 419
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=65.02 E-value=57 Score=28.73 Aligned_cols=121 Identities=15% Similarity=0.081 Sum_probs=78.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh---HHHHHHHHHHhc
Q psy17788 228 ATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVD---VWGVYVDMLVKS 304 (365)
Q Consensus 228 a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~---~w~~~~~~~~~~ 304 (365)
+.-+++.+...+++...+.-++..|.+...+ ..+.+++.-.|++++|..-++-+-...|+... ++..+++++.
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~R--hflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ea-- 83 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGR--HFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCEA-- 83 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccch--hHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHH--
Confidence 4456788899999999999999999976544 34477888899999999999999988888744 4555555442
Q ss_pred CChHHHH-HHHHHHHhCCCCCCCcHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHHH
Q psy17788 305 DRVDLGR-QVIQRAVTQKLPPKKLKPLYMKWLKLEE---QYGDAEAVENVKKEIEQYV 358 (365)
Q Consensus 305 g~~~~Ar-~~~eral~~~l~~~~~~~~~~~~l~~e~---~~G~~~~a~~v~~kA~~~v 358 (365)
+| .+|.--....+. ......|..-+.-.. .-|+-+.+...-++|++-.
T Consensus 84 -----~R~evfag~~~Pgfl-g~p~p~wva~L~aala~h~dg~gea~~alreqal~aa 135 (273)
T COG4455 84 -----ARNEVFAGGAVPGFL-GGPSPEWVAALLAALALHSDGAGEARTALREQALKAA 135 (273)
T ss_pred -----HHHHHhccCCCCCCc-CCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhC
Confidence 22 334322221111 123345555444322 2245566777777777644
No 420
>KOG4814|consensus
Probab=65.01 E-value=1.2e+02 Score=31.03 Aligned_cols=96 Identities=11% Similarity=0.008 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCH-------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHH
Q psy17788 152 NVWTSLLNLEHLYGTKESLQECLHEAVRCNDET-------KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIY 224 (365)
Q Consensus 152 ~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 224 (365)
-+|..-... .+..+|..+.+.|+..+...|.. ++...+.-+|....+.++|.+++.++-+.. |.++-.-
T Consensus 356 iLWn~A~~~-F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d---~~~~l~q 431 (872)
T KOG4814|consen 356 LLWNTAKKL-FKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD---RQSPLCQ 431 (872)
T ss_pred HHHHhhHHH-HHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc---cccHHHH
Confidence 345444333 23457888999999998887632 345566778888889999999999998876 6676555
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcC
Q psy17788 225 LQCATLLLRLGQKDTARHILQRGLNNL 251 (365)
Q Consensus 225 ~~~a~~~~~~g~~~~A~~~l~ral~~~ 251 (365)
..........|.-++|+.+........
T Consensus 432 ~~~~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 432 LLMLQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence 555556666788888888887766543
No 421
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=64.87 E-value=1.4e+02 Score=29.07 Aligned_cols=95 Identities=6% Similarity=0.086 Sum_probs=65.6
Q ss_pred HHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHH
Q psy17788 118 YMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRC--NDETKVYMNMMEIYA 195 (365)
Q Consensus 118 ~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~--~~~~~~~~~l~~~~~ 195 (365)
++....+..+++.+..+.-|--. .|..-.. ....-.++++.+..+|..+.+..++..=+.+ .|+...+..+.+.+.
T Consensus 72 fvn~~~~~~~~d~~~~~L~k~R~-s~~~~~~-~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl 149 (429)
T PF10037_consen 72 FVNNVESKDDLDEVEDVLYKFRH-SPNCSYL-LPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFL 149 (429)
T ss_pred HHhhcCCHhHHHHHHHHHHHHHc-Ccccccc-cCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHh
Confidence 34444445556666666554322 2211000 0112247778889999999999999887765 478888999999999
Q ss_pred HhCCHHHHHHHHHHHHHHh
Q psy17788 196 ASAQIRDLESTVKLLLKKA 214 (365)
Q Consensus 196 ~~g~~~~A~~~~~~al~~~ 214 (365)
+.|++..|.++...++...
T Consensus 150 ~~~~~~~A~~V~~~~~lQe 168 (429)
T PF10037_consen 150 KKGNYKSAAKVATEMMLQE 168 (429)
T ss_pred hcccHHHHHHHHHHHHHhh
Confidence 9999999999988877654
No 422
>KOG2114|consensus
Probab=64.46 E-value=2e+02 Score=30.50 Aligned_cols=109 Identities=12% Similarity=0.156 Sum_probs=66.8
Q ss_pred HcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHH
Q psy17788 123 LQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRD 202 (365)
Q Consensus 123 ~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~ 202 (365)
.+..-+.-|..+.+.- ..+ .....++...|++.....|+++.|..-|-+++..-++..+...+.+ ..++.+
T Consensus 345 ~kK~ly~~Ai~LAk~~--~~d---~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLd----aq~Ikn 415 (933)
T KOG2114|consen 345 FKKNLYKVAINLAKSQ--HLD---EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLD----AQRIKN 415 (933)
T ss_pred HHhhhHHHHHHHHHhc--CCC---HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcC----HHHHHH
Confidence 3444455555555421 111 1134578889999999999999999999999988777766655532 233445
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHH
Q psy17788 203 LESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHI 243 (365)
Q Consensus 203 A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 243 (365)
...+++.+.+.. -.+..--..+..+|.+.++.+.-...
T Consensus 416 Lt~YLe~L~~~g---la~~dhttlLLncYiKlkd~~kL~ef 453 (933)
T KOG2114|consen 416 LTSYLEALHKKG---LANSDHTTLLLNCYIKLKDVEKLTEF 453 (933)
T ss_pred HHHHHHHHHHcc---cccchhHHHHHHHHHHhcchHHHHHH
Confidence 555555555554 34444445555666666655544443
No 423
>PRK15338 type III secretion system regulator InvE; Provisional
Probab=63.48 E-value=1.4e+02 Score=28.41 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=12.0
Q ss_pred HHHHHHHHcCCCH-HHHHHHHHHHH
Q psy17788 172 ECLHEAVRCNDET-KVYMNMMEIYA 195 (365)
Q Consensus 172 ~v~~ral~~~~~~-~~~~~l~~~~~ 195 (365)
.++..+.+..|++ ..|..|..++.
T Consensus 110 ~ll~~arq~FpD~SDl~~aLreLl~ 134 (372)
T PRK15338 110 EFLRQARKLFPDPSDLVLVLRELLR 134 (372)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 5555555555543 34555555444
No 424
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=63.40 E-value=14 Score=22.52 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHhh
Q psy17788 113 ELWVKYMAYHLQATEIEKARSIARRALTV 141 (365)
Q Consensus 113 ~~w~~~~~~~~~~~~~e~A~~~~~raL~~ 141 (365)
+++..++...+..++++.|..-|++||..
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45677888888888888888888888873
No 425
>KOG1839|consensus
Probab=63.34 E-value=1.8e+02 Score=32.18 Aligned_cols=100 Identities=14% Similarity=0.078 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHh----cC-CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----CCcc
Q psy17788 186 VYMNMMEIYAASAQIRDLESTVKLLLKKA----GQ-THSSVNIYLQCATLLLRLGQKDTARHILQRGLNNL-----PPAV 255 (365)
Q Consensus 186 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~----~~-~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~-----p~~~ 255 (365)
.|..++.++.+.|+.++|+..-.+++-.. |. ++.....+..++.+++..++...|...+.|++... |..+
T Consensus 975 ~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP 1054 (1236)
T KOG1839|consen 975 KYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHP 1054 (1236)
T ss_pred HHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCC
Confidence 44555555555555555555555444211 11 12223334444444555555555555555554431 2111
Q ss_pred h-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17788 256 H-VTLITRFALAENKFGDASRAQALLEHTLT 285 (365)
Q Consensus 256 ~-~~~~~~~a~~~~~~g~~e~A~~~fe~~l~ 285 (365)
. ..+......++...+.++.|..+.+.++.
T Consensus 1055 ~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1055 PTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred chhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 1 11223333344444555555555555554
No 426
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.04 E-value=95 Score=26.37 Aligned_cols=122 Identities=16% Similarity=0.036 Sum_probs=76.1
Q ss_pred HHhCCHHHHHHHHHHHHHHhcCCCCc--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchH--HHHHHHHHHHHHc
Q psy17788 195 AASAQIRDLESTVKLLLKKAGQTHSS--VNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHV--TLITRFALAENKF 270 (365)
Q Consensus 195 ~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~--~~~~~~a~~~~~~ 270 (365)
.+.|+.++|...|..+-+.. ..+ .-..+..+.+....|+...|...|..+-...|...-. ..-.+-+-++..+
T Consensus 69 A~~~k~d~Alaaf~~lektg---~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~ 145 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTG---YGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDN 145 (221)
T ss_pred HHcCCchHHHHHHHHHHhcC---CCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcc
Confidence 45677777777777666543 222 2334556667777788888888887765544332111 1223345566777
Q ss_pred CCHHHHHHHHHHHH-HhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788 271 GDASRAQALLEHTL-TSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVT 319 (365)
Q Consensus 271 g~~e~A~~~fe~~l-~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~ 319 (365)
|.++...+..+-+- ..+|-+..+--.++-.-.+.|++..|+..|..+..
T Consensus 146 gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 146 GSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred ccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 88877766665542 34555556666666666777888888888887776
No 427
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=62.74 E-value=81 Score=25.48 Aligned_cols=56 Identities=16% Similarity=0.274 Sum_probs=33.5
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy17788 191 MEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLN 249 (365)
Q Consensus 191 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~ 249 (365)
.+++...|+-+...+++..+.+.. ..+|.+.+.+|..|.+.|+..++-.++.+|-+
T Consensus 93 Ld~lv~~~kkDqLdki~~~l~kn~---~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 93 LDILVKQGKKDQLDKIYNELKKNE---EINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHH--------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHhhcc---CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 445566677777777777766544 56677777777777777777777777766654
No 428
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=62.45 E-value=1.3e+02 Score=27.70 Aligned_cols=99 Identities=11% Similarity=0.201 Sum_probs=60.3
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCcch--H
Q psy17788 188 MNMMEIYAASAQIRDLESTVKLLLKKA---GQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNN-----LPPAVH--V 257 (365)
Q Consensus 188 ~~l~~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~-----~p~~~~--~ 257 (365)
..++.++.+.|++.+|+.+....+..+ ..-+.-..++..-..+|....+..+++.-+--|--. .|..-. +
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l 208 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL 208 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence 345667888899999988887776543 111333455666666677766766666655444221 233211 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17788 258 TLITRFALAENKFGDASRAQALLEHTLTSYP 288 (365)
Q Consensus 258 ~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P 288 (365)
.++. |.++..-.++.-|..+|-.+++.+.
T Consensus 209 DL~s--GIlhcdd~dyktA~SYF~Ea~Egft 237 (421)
T COG5159 209 DLLS--GILHCDDRDYKTASSYFIEALEGFT 237 (421)
T ss_pred HHhc--cceeeccccchhHHHHHHHHHhccc
Confidence 2333 5555566678888888888887654
No 429
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=62.30 E-value=1.3e+02 Score=27.54 Aligned_cols=43 Identities=14% Similarity=0.037 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q psy17788 273 ASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQ 315 (365)
Q Consensus 273 ~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~e 315 (365)
.+.|...+.+++..+|..+.+...++.+-...|.++=-..+|.
T Consensus 115 ~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~WL~~l~~ 157 (277)
T PF13226_consen 115 CDQAVAALLKAIELSPRPVAAAIGMINISAYFGEPDWLAALFA 157 (277)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCchHHHHHHC
Confidence 3577888888888888888888888877777777766555554
No 430
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=61.45 E-value=59 Score=23.48 Aligned_cols=15 Identities=7% Similarity=0.157 Sum_probs=7.0
Q ss_pred HHHHHHhCCHHHHHH
Q psy17788 191 MEIYAASAQIRDLES 205 (365)
Q Consensus 191 ~~~~~~~g~~~~A~~ 205 (365)
+.+|...|++.+++.
T Consensus 50 ~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 50 IQAHMEWGKYREMLA 64 (80)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444455444443
No 431
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=61.27 E-value=47 Score=29.38 Aligned_cols=19 Identities=5% Similarity=-0.113 Sum_probs=11.5
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q psy17788 342 GDAEAVENVKKEIEQYVRN 360 (365)
Q Consensus 342 G~~~~a~~v~~kA~~~v~~ 360 (365)
++...|...+++|+++-++
T Consensus 192 ~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 192 ETLQLALALLQRAFQLNDK 210 (230)
T ss_pred ccHHHHHHHHHHHHHhCCC
Confidence 4555666666666666443
No 432
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=61.21 E-value=80 Score=24.94 Aligned_cols=34 Identities=12% Similarity=0.113 Sum_probs=14.9
Q ss_pred hCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q psy17788 197 SAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLR 233 (365)
Q Consensus 197 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~ 233 (365)
.+....+...++.+++.. +.++.+...++..+.+
T Consensus 20 ~~~~~~l~~yLe~~~~~~---~~~~~~~~~li~ly~~ 53 (140)
T smart00299 20 RNLLEELIPYLESALKLN---SENPALQTKLIELYAK 53 (140)
T ss_pred CCcHHHHHHHHHHHHccC---ccchhHHHHHHHHHHH
Confidence 344444444444444432 3344444444444443
No 433
>KOG1310|consensus
Probab=60.60 E-value=45 Score=33.17 Aligned_cols=89 Identities=10% Similarity=-0.073 Sum_probs=64.7
Q ss_pred CCCChHHHHHHhhcCCCCHHHHHHHHHHHHcc---cCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHH
Q psy17788 94 EPVSPDGFDRMLLGQPNNSELWVKYMAYHLQA---TEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESL 170 (365)
Q Consensus 94 ~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~---~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a 170 (365)
...++..|.+++...|....++..++..+++. |+.-.|..-.-.|+...| -....|+.+..+....+.+..|
T Consensus 390 ~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~-----s~~kah~~la~aL~el~r~~ea 464 (758)
T KOG1310|consen 390 VSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNP-----SIQKAHFRLARALNELTRYLEA 464 (758)
T ss_pred HHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCCh-----HHHHHHHHHHHHHHHHhhHHHh
Confidence 34678889999999999999999998888765 355556666666777666 5567788888877777777777
Q ss_pred HHHHHHHHHcCCCHHHH
Q psy17788 171 QECLHEAVRCNDETKVY 187 (365)
Q Consensus 171 ~~v~~ral~~~~~~~~~ 187 (365)
+.....+...+|...+.
T Consensus 465 l~~~~alq~~~Ptd~a~ 481 (758)
T KOG1310|consen 465 LSCHWALQMSFPTDVAR 481 (758)
T ss_pred hhhHHHHhhcCchhhhh
Confidence 77776666666644433
No 434
>KOG1166|consensus
Probab=60.31 E-value=1.3e+02 Score=32.54 Aligned_cols=54 Identities=22% Similarity=0.239 Sum_probs=33.8
Q ss_pred HhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy17788 196 ASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNN 250 (365)
Q Consensus 196 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~ 250 (365)
....+.+++.+|..+.... ........|..++..+.+.+.+.+|..+|+..++.
T Consensus 90 ~~e~~~d~~d~f~~m~~kg-Ig~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~ 143 (974)
T KOG1166|consen 90 LREELQDAEDFFSYLENKG-IGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQN 143 (974)
T ss_pred HHHHHhhHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444566666666666542 12455666677777777777777777777777654
No 435
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=59.29 E-value=29 Score=21.12 Aligned_cols=28 Identities=18% Similarity=0.110 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q psy17788 186 VYMNMMEIYAASAQIRDLESTVKLLLKK 213 (365)
Q Consensus 186 ~~~~l~~~~~~~g~~~~A~~~~~~al~~ 213 (365)
+|..++.+-...++|++|..=|.+++..
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 5667777777777777777777777654
No 436
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=59.10 E-value=68 Score=32.46 Aligned_cols=50 Identities=16% Similarity=0.160 Sum_probs=25.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q psy17788 264 ALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQ 315 (365)
Q Consensus 264 a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~e 315 (365)
+.+....|..++|-.+|++++..+|+ .....|+.-+.+.|-...|+.++.
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 49 AEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred hhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 44444445555555555555555555 444455555555555555555554
No 437
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.02 E-value=1.2e+02 Score=25.83 Aligned_cols=130 Identities=13% Similarity=0.104 Sum_probs=79.3
Q ss_pred CCHHHHHHHHHHHHHcC-CCHH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHH-----HHHHHHHHHcCC
Q psy17788 165 GTKESLQECLHEAVRCN-DETK--VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIY-----LQCATLLLRLGQ 236 (365)
Q Consensus 165 g~~~~a~~v~~ral~~~-~~~~--~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-----~~~a~~~~~~g~ 236 (365)
+..+.|..-|...-... .+.. ..++.+.+..+.|+...|...|..+-.- ...|.+. +.-+-++...|-
T Consensus 72 ~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d----t~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 72 NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD----TSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc----CCCcchhhHHHHHHHHHHHhcccc
Confidence 34556666666544332 2223 3466688888999999999999988764 3344444 344445677888
Q ss_pred hHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q psy17788 237 KDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDM 300 (365)
Q Consensus 237 ~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~ 300 (365)
|+......+- |....+.-....--.+|..-.+.|++..|+..|..+.. +...+......+++
T Consensus 148 y~dV~srvep-La~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ 209 (221)
T COG4649 148 YDDVSSRVEP-LAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQI 209 (221)
T ss_pred HHHHHHHhhh-ccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHH
Confidence 8877665443 22221111122334556677789999999999998875 43334444444433
No 438
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=57.91 E-value=2.2e+02 Score=28.85 Aligned_cols=130 Identities=14% Similarity=0.101 Sum_probs=59.4
Q ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHhC--CHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHH
Q psy17788 165 GTKESLQECLHEAVRCNDETKVYMNM-MEIYAASA--QIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTAR 241 (365)
Q Consensus 165 g~~~~a~~v~~ral~~~~~~~~~~~l-~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~ 241 (365)
|+.+.|....+......+. .+...+ +.++...+ .......+|++.+++. |........+...+.. ...+.
T Consensus 323 ~~l~eal~~~e~~c~~~~~-~lpi~~~~~lle~~d~~~~~~l~~~~e~~~~~~---P~~~~~le~l~~~~~~---~~~~~ 395 (547)
T PF14929_consen 323 GRLKEALNELEKFCISSTC-ALPIRLRAHLLEYFDQNNSSVLSSCLEDCLKKD---PTMSYSLERLILLHQK---DYSAE 395 (547)
T ss_pred ccHHHHHHHHHHhccCCCc-cchHHHHHHHHHHhCcccHHHHHHHHHHHhcCC---CcHHHHHHHHHhhhhh---HHHHH
Confidence 4555555555554322222 222222 44444444 4556666777777664 4443333333333222 33444
Q ss_pred HHHHHH---HhcCCCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHH-------Hh--CCCChhHHHHHHHHHHhc
Q psy17788 242 HILQRG---LNNLPPAVHVTLITRFALAENK-FGDASRAQALLEHTL-------TS--YPARVDVWGVYVDMLVKS 304 (365)
Q Consensus 242 ~~l~ra---l~~~p~~~~~~~~~~~a~~~~~-~g~~e~A~~~fe~~l-------~~--~P~~~~~w~~~~~~~~~~ 304 (365)
.+++-. +...|. ..+|..++.+..+ .++++.-.+....++ .. +-.+..+|..+.....+.
T Consensus 396 ~Lle~i~~~l~~~~s---~~iwle~~~~~l~~~~~~~~~~e~~~~~l~vlf~~LDf~~~r~n~~aW~~l~~~l~~i 468 (547)
T PF14929_consen 396 QLLEMIALHLDLVPS---HPIWLEFVSCFLKNPSRFEDKEEDHKSALKVLFEFLDFAGWRKNIQAWKLLAKKLPKI 468 (547)
T ss_pred HHHHHHHHHhhcCCC---chHHHHHHHHHHhccccccccHHHHHHHHhcchhcccccccccccHHHHHHHHHhhHh
Confidence 444422 122333 3466666776666 344443333333332 21 223456677666655443
No 439
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=57.63 E-value=1.4e+02 Score=26.47 Aligned_cols=40 Identities=18% Similarity=0.097 Sum_probs=26.8
Q ss_pred CCCcchHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHhCCCC
Q psy17788 251 LPPAVHVTLITRFALAEN---------KFGDASRAQALLEHTLTSYPAR 290 (365)
Q Consensus 251 ~p~~~~~~~~~~~a~~~~---------~~g~~e~A~~~fe~~l~~~P~~ 290 (365)
.|......++...|..+. ..++...|..++++++..+|+-
T Consensus 163 mpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 163 MPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred CChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 355445566666666663 3456778888888888888874
No 440
>KOG2280|consensus
Probab=56.58 E-value=2.6e+02 Score=29.28 Aligned_cols=98 Identities=12% Similarity=0.043 Sum_probs=56.9
Q ss_pred HHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCH
Q psy17788 194 YAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDA 273 (365)
Q Consensus 194 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~ 273 (365)
+...|+..+|.++-.+ |. -++..+|..-+..+...+++++-.++- +..++ |- =+.=|...+.+.|+.
T Consensus 694 li~~g~~k~a~ql~~~----Fk--ipdKr~~wLk~~aLa~~~kweeLekfA-kskks-PI-----Gy~PFVe~c~~~~n~ 760 (829)
T KOG2280|consen 694 LILIGQNKRAEQLKSD----FK--IPDKRLWWLKLTALADIKKWEELEKFA-KSKKS-PI-----GYLPFVEACLKQGNK 760 (829)
T ss_pred HHHccchHHHHHHHHh----cC--CcchhhHHHHHHHHHhhhhHHHHHHHH-hccCC-CC-----CchhHHHHHHhcccH
Confidence 3456777777665433 31 346677777777888888887655432 22221 22 123345566788888
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHH
Q psy17788 274 SRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQ 312 (365)
Q Consensus 274 e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~ 312 (365)
++|..++-++ |... ..+.+|...|++.+|.+
T Consensus 761 ~EA~KYiprv----~~l~----ekv~ay~~~~~~~eAad 791 (829)
T KOG2280|consen 761 DEAKKYIPRV----GGLQ----EKVKAYLRVGDVKEAAD 791 (829)
T ss_pred HHHhhhhhcc----CChH----HHHHHHHHhccHHHHHH
Confidence 8888888666 2222 34455555555555543
No 441
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=56.36 E-value=34 Score=30.65 Aligned_cols=62 Identities=15% Similarity=0.108 Sum_probs=43.5
Q ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHh
Q psy17788 240 ARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVK 303 (365)
Q Consensus 240 A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~ 303 (365)
|+.+|.+|+...|..-+ .+.++|.+....|+.=.|.-.|-+++..---.+.+...+..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~--p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGN--PYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSH--HHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCC--cccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67889999999998644 668888888888888888888888875432235666676666665
No 442
>KOG0276|consensus
Probab=56.31 E-value=87 Score=31.75 Aligned_cols=86 Identities=21% Similarity=0.134 Sum_probs=60.2
Q ss_pred CCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHH
Q psy17788 108 QPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVY 187 (365)
Q Consensus 108 ~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~ 187 (365)
..++..-|-+++.+.++.+++..|.++|.+|-. |..++-++...|+-+....+-..+-+.-.+..++
T Consensus 662 e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-------------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF 728 (794)
T KOG0276|consen 662 EANSEVKWRQLGDAALSAGELPLASECFLRARD-------------LGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAF 728 (794)
T ss_pred hhcchHHHHHHHHHHhhcccchhHHHHHHhhcc-------------hhhhhhhhhhcCChhHHHHHHHHHHhhcccchHH
Confidence 467888999999999999999999999998754 5556667777787766555544443333233333
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHH
Q psy17788 188 MNMMEIYAASAQIRDLESTVKLL 210 (365)
Q Consensus 188 ~~l~~~~~~~g~~~~A~~~~~~a 210 (365)
..|...|+++++.+++...
T Consensus 729 ----~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 729 ----LAYFLSGDYEECLELLIST 747 (794)
T ss_pred ----HHHHHcCCHHHHHHHHHhc
Confidence 2345678888877766443
No 443
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=56.14 E-value=71 Score=30.91 Aligned_cols=84 Identities=17% Similarity=0.084 Sum_probs=53.3
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHhcCC----------CCc-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc
Q psy17788 191 MEIYAASAQIRDLESTVKLLLKKAGQT----------HSS-----VNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV 255 (365)
Q Consensus 191 ~~~~~~~g~~~~A~~~~~~al~~~~~~----------~~~-----~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~ 255 (365)
+.-+.+.+++..|..-|..++...... ..+ .-+-..+..+|++.++++-|+..-.|.+-.+|...
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 556678888999999999988876321 001 01234556677788888888877777777777754
Q ss_pred hHHHHHHHHHHHHHcCCHHHH
Q psy17788 256 HVTLITRFALAENKFGDASRA 276 (365)
Q Consensus 256 ~~~~~~~~a~~~~~~g~~e~A 276 (365)
.-.++. |.+...+.++.+|
T Consensus 263 rnHLrq--AavfR~LeRy~eA 281 (569)
T PF15015_consen 263 RNHLRQ--AAVFRRLERYSEA 281 (569)
T ss_pred hHHHHH--HHHHHHHHHHHHH
Confidence 333333 5555555555544
No 444
>PRK15338 type III secretion system regulator InvE; Provisional
Probab=55.99 E-value=1.9e+02 Score=27.55 Aligned_cols=44 Identities=9% Similarity=-0.061 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhcCCCCCChHHHHHHhhcCCCCHHHHHHHHHHHH
Q psy17788 79 EARIRQAEDELLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHL 123 (365)
Q Consensus 79 e~~~~~~e~~l~~~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~ 123 (365)
++++..+...+ +.+.|.....+..++...|+.+++|..+.....
T Consensus 91 DeKl~~l~~~L-k~~~~~~~~ll~~arq~FpD~SDl~~aLreLl~ 134 (372)
T PRK15338 91 LPKAKQILKLI-SVHGGALEEFLRQARKLFPDPSDLVLVLRELLR 134 (372)
T ss_pred HHHHHHHHHHH-HhcCCCHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 34444444433 323344446666666666766666666666554
No 445
>KOG1463|consensus
Probab=55.90 E-value=1.8e+02 Score=27.39 Aligned_cols=194 Identities=11% Similarity=0.103 Sum_probs=111.6
Q ss_pred CCCCCChHHHHHHhhc--CCCCH--------HHHHHHHHHHHcccCHHHHHHHHHHHHh---hccCccccchHHHHHHHH
Q psy17788 92 NGEPVSPDGFDRMLLG--QPNNS--------ELWVKYMAYHLQATEIEKARSIARRALT---VINIRNEEDRLNVWTSLL 158 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~~--~p~~~--------~~w~~~~~~~~~~~~~e~A~~~~~raL~---~~p~~~~~~~~~~w~~~~ 158 (365)
++..+++..|.+++.. .|.+. ..-..++..+.+.|+.+.-+.+....-. .++.. .-..+.-.++
T Consensus 18 ~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Ka---kaaKlvR~Lv 94 (411)
T KOG1463|consen 18 NQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKA---KAAKLVRSLV 94 (411)
T ss_pred chhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhH---HHHHHHHHHH
Confidence 3345777777777763 23322 5667888888888888777766543221 11110 1122333333
Q ss_pred HHHHH-hCCHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc---CCCCcHHHHHHH
Q psy17788 159 NLEHL-YGTKESLQECLHEAVRCNDE-------TKVYMNMMEIYAASAQIRDLESTVKLLLKKAG---QTHSSVNIYLQC 227 (365)
Q Consensus 159 ~l~~~-~g~~~~a~~v~~ral~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~~~~ 227 (365)
.+... -+..+.-+.++..+++.... ..+-.+++.+|.+.+++.+|..+....++..- .-..-..+...-
T Consensus 95 d~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llE 174 (411)
T KOG1463|consen 95 DMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLE 174 (411)
T ss_pred HHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhh
Confidence 33222 12334445555555543321 11335678899999999999998887775431 002223455666
Q ss_pred HHHHHHcCChHHHHHHHHHHHhc-----CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17788 228 ATLLLRLGQKDTARHILQRGLNN-----LPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYP 288 (365)
Q Consensus 228 a~~~~~~g~~~~A~~~l~ral~~-----~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P 288 (365)
...|+...+..+|+..+--|--. .|..-...+=..-|.++..-.++.-|..+|-.+++.+.
T Consensus 175 SK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~ 240 (411)
T KOG1463|consen 175 SKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFD 240 (411)
T ss_pred hHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHcccc
Confidence 66777788888888877665432 23221222222225565666789999999999888664
No 446
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=55.57 E-value=1.6e+02 Score=26.54 Aligned_cols=94 Identities=12% Similarity=0.023 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcC------CCHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHHh--c-CCCCcH
Q psy17788 152 NVWTSLLNLEHLYGTKESLQECLHEAVRCN------DETKVYMNMMEIYAASAQIR-DLESTVKLLLKKA--G-QTHSSV 221 (365)
Q Consensus 152 ~~w~~~~~l~~~~g~~~~a~~v~~ral~~~------~~~~~~~~l~~~~~~~g~~~-~A~~~~~~al~~~--~-~~~~~~ 221 (365)
++...-+......|+...+.++..-.++.. .+.....+++.++...+.-+ .-.++.+++++=- + ....++
T Consensus 11 dLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp 90 (260)
T PF04190_consen 11 DLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDP 90 (260)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--H
T ss_pred HHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCH
Confidence 344444555566677666554443333321 12333356677766665433 3445555555421 1 114678
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHH
Q psy17788 222 NIYLQCATLLLRLGQKDTARHILQ 245 (365)
Q Consensus 222 ~~~~~~a~~~~~~g~~~~A~~~l~ 245 (365)
.++..+|..+.+.|++..|+..|-
T Consensus 91 ~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 91 ELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHH
Confidence 888888888888888888876653
No 447
>KOG1811|consensus
Probab=54.94 E-value=2e+02 Score=29.24 Aligned_cols=68 Identities=10% Similarity=0.086 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHc--CChHHHHHHHHHHHhcCC
Q psy17788 183 ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRL--GQKDTARHILQRGLNNLP 252 (365)
Q Consensus 183 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~--g~~~~A~~~l~ral~~~p 252 (365)
...+|..++....+.+++..|+.-|.++++..| .+-|.+...+.+.-..- .+....+.+|+...+.-|
T Consensus 586 ~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkg--edipdvi~diin~ieGgpp~dVq~Vrem~dhlak~ap 655 (1141)
T KOG1811|consen 586 TFGAWHAWGLACLKAENLAAAREKFKQAFKLKG--EDIPDVIFDIINLIEGGPPRDVQDVREMLDHLAKPAP 655 (1141)
T ss_pred cccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCC--CccchHHHHHHHhhcCCCcchHHHHHHHHHHhccCCc
Confidence 456888888888888888888888888887654 34466666665544332 245666777776665544
No 448
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=53.10 E-value=1.1e+02 Score=24.12 Aligned_cols=54 Identities=7% Similarity=0.105 Sum_probs=44.5
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcC
Q psy17788 181 NDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLG 235 (365)
Q Consensus 181 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g 235 (365)
.|+..+...++..|...|++..|.++.+...+.++ .+-...+|..+.......-
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~-I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYP-IPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHhc
Confidence 45677888889999999999999999999999986 5666889998888766543
No 449
>KOG1166|consensus
Probab=52.86 E-value=1.1e+02 Score=33.05 Aligned_cols=122 Identities=14% Similarity=0.190 Sum_probs=72.9
Q ss_pred cHHHHHHHHHHHHH----cCC-hHHHHHHHHHHHhcCCCcchHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHh--CCC
Q psy17788 220 SVNIYLQCATLLLR----LGQ-KDTARHILQRGLNNLPPAVHVTLITRFALA---ENKFGDASRAQALLEHTLTS--YPA 289 (365)
Q Consensus 220 ~~~~~~~~a~~~~~----~g~-~~~A~~~l~ral~~~p~~~~~~~~~~~a~~---~~~~g~~e~A~~~fe~~l~~--~P~ 289 (365)
-...|..+...... .+. ....+.++++++...++.+....-.+|..+ ++....+.+++.+|..+... -+.
T Consensus 33 Pl~~w~ryi~wv~~~~~~~~~~~~~l~~~lerc~~~~~~lk~Y~nD~Rfl~~~~~~~~~e~~~d~~d~f~~m~~kgIg~~ 112 (974)
T KOG1166|consen 33 PLDKWLRYIEWVLEVYPEGKENQSLLRNLLERCLEELEDLKRYRNDPRFLILWCSLELREELQDAEDFFSYLENKGIGTT 112 (974)
T ss_pred chhhhHhHhhhhhhccccCCchhhhHHHHHHHHHHhccchhhccccHHHHHHHHhHHHHHHHhhHHHHHHHHHhccccch
Confidence 34566666665433 223 455667777777665543322222222222 23445566777777766542 344
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCC
Q psy17788 290 RVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGD 343 (365)
Q Consensus 290 ~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~ 343 (365)
....+..|+..+...+.+.+|..+|+..+..... ....+-..+..|....|.
T Consensus 113 lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~ae--P~~rL~~~~~~F~~r~~r 164 (974)
T KOG1166|consen 113 LALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAE--PLERLLRQYSNFQQRLMR 164 (974)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHhh
Confidence 5566777888888888888888888888875332 345666777777766654
No 450
>KOG2758|consensus
Probab=52.39 E-value=2e+02 Score=26.87 Aligned_cols=63 Identities=16% Similarity=0.151 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCCC--hhHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy17788 256 HVTLITRFALAENKFGDASRAQAL--LEHTLTSYPAR--VDVWGVYVDMLVKSDRVDLGRQVIQRAV 318 (365)
Q Consensus 256 ~~~~~~~~a~~~~~~g~~e~A~~~--fe~~l~~~P~~--~~~w~~~~~~~~~~g~~~~Ar~~~eral 318 (365)
++.++++||.+.+.+|++..|-.+ |-+++-..|+. ..+...-...++-..+++.|++-+.|.-
T Consensus 128 ~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLr 194 (432)
T KOG2758|consen 128 RIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLR 194 (432)
T ss_pred HHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 455666666666666666655433 23333333332 1111111122333445555555554443
No 451
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=52.37 E-value=1.2e+02 Score=24.04 Aligned_cols=46 Identities=17% Similarity=0.249 Sum_probs=29.1
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--hhHHHHHHH
Q psy17788 254 AVHVTLITRFALAENKFGDASRAQALLEHTLTSYPAR--VDVWGVYVD 299 (365)
Q Consensus 254 ~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~--~~~w~~~~~ 299 (365)
.|...++...+..+...|++..|..+.+.....||=. ..+|..+..
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3445666666666667777777777777777776622 345655544
No 452
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=50.71 E-value=41 Score=24.01 Aligned_cols=19 Identities=0% Similarity=-0.085 Sum_probs=13.2
Q ss_pred HhCCHHHHHHHHHHHHHHh
Q psy17788 196 ASAQIRDLESTVKLLLKKA 214 (365)
Q Consensus 196 ~~g~~~~A~~~~~~al~~~ 214 (365)
..|++++|..+|..++..|
T Consensus 18 ~~gny~eA~~lY~~ale~~ 36 (75)
T cd02680 18 EKGNAEEAIELYTEAVELC 36 (75)
T ss_pred HhhhHHHHHHHHHHHHHHH
Confidence 4566777777777777665
No 453
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=49.29 E-value=3e+02 Score=27.93 Aligned_cols=112 Identities=17% Similarity=0.068 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHH--HHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCC-HHHHHHH
Q psy17788 203 LESTVKLLLKKAGQTHSSVNIYLQC--ATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGD-ASRAQAL 279 (365)
Q Consensus 203 A~~~~~~al~~~~~~~~~~~~~~~~--a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~-~e~A~~~ 279 (365)
+...+...+... +.++++.... .-.+...+....+...+..++..+|.. ......++......|. ..-+..+
T Consensus 50 ~~~a~~~~~~~~---~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~L~~ale~~~~~~~~~~~~ 124 (620)
T COG3914 50 AIYALLLGIAIN---DVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPEN--CPAVQNLAAALELDGLQFLALADI 124 (620)
T ss_pred HHHHHHccCccC---CCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCccc--chHHHHHHHHHHHhhhHHHHHHHH
Confidence 444454444433 6677775555 444445566666777777777777775 3344555665444444 4444555
Q ss_pred HHHHHHhCCCChhHHHHH------HHHHHhcCChHHHHHHHHHHHh
Q psy17788 280 LEHTLTSYPARVDVWGVY------VDMLVKSDRVDLGRQVIQRAVT 319 (365)
Q Consensus 280 fe~~l~~~P~~~~~w~~~------~~~~~~~g~~~~Ar~~~eral~ 319 (365)
-+.+...-|++..+..-. ++.....|...++....++++.
T Consensus 125 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d 170 (620)
T COG3914 125 SEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVD 170 (620)
T ss_pred HHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 555777778877776555 4445556777777777777775
No 454
>KOG4279|consensus
Probab=48.94 E-value=3.5e+02 Score=28.55 Aligned_cols=217 Identities=14% Similarity=0.115 Sum_probs=125.4
Q ss_pred CCC--CHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccC-ccccchHHHHHHHHH---HHHHhCCHHHHHHHHHHHHHcC
Q psy17788 108 QPN--NSELWVKYMAYHLQATEIEKARSIARRALTVINI-RNEEDRLNVWTSLLN---LEHLYGTKESLQECLHEAVRCN 181 (365)
Q Consensus 108 ~p~--~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~-~~~~~~~~~w~~~~~---l~~~~g~~~~a~~v~~ral~~~ 181 (365)
+|+ ++++-..+|..|....+++.-.++.+. |+.+|. ....+..++-+.|+- --++-|+-++|..+.-.+++..
T Consensus 195 np~VL~~d~V~nlmlSyRDvQdY~amirLVe~-Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~e 273 (1226)
T KOG4279|consen 195 NPDVLHPDTVSNLMLSYRDVQDYDAMIRLVED-LKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKE 273 (1226)
T ss_pred CccccCHHHHHHHHhhhccccchHHHHHHHHH-HHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhc
Confidence 454 778889999999999999988887765 455772 222233344443433 3345578899999998888875
Q ss_pred CC--HHHHHHHHHH---------HHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCC-hHHHHHHHHHHHh
Q psy17788 182 DE--TKVYMNMMEI---------YAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQ-KDTARHILQRGLN 249 (365)
Q Consensus 182 ~~--~~~~~~l~~~---------~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~-~~~A~~~l~ral~ 249 (365)
.+ +.+|...+.+ |...+..+.|.+-|+++... ..+...=++++.++...|. ++...++=.-++.
T Consensus 274 g~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev----eP~~~sGIN~atLL~aaG~~Fens~Elq~Igmk 349 (1226)
T KOG4279|consen 274 GPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV----EPLEYSGINLATLLRAAGEHFENSLELQQIGMK 349 (1226)
T ss_pred CCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc----CchhhccccHHHHHHHhhhhccchHHHHHHHHH
Confidence 42 2233333333 44556778899999999886 4455666777777777663 3433333222221
Q ss_pred c---CCCcchHHHHHHH---HHHH---HHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788 250 N---LPPAVHVTLITRF---ALAE---NKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ 320 (365)
Q Consensus 250 ~---~p~~~~~~~~~~~---a~~~---~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~ 320 (365)
. +...-.+.-+..| |.++ .-.+++.+|...-+.+.+..|-...+-+....+ .+|.+...-
T Consensus 350 Ln~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~WYLkS~meni-----------~l~~~fr~t 418 (1226)
T KOG4279|consen 350 LNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVWYLKSTMENI-----------LLINRFRPT 418 (1226)
T ss_pred HHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCceehHHHHHHHH-----------HHHHhcCCC
Confidence 1 1111112211111 1111 124677888888888877776544443333332 344444331
Q ss_pred CCCCCCcHHHHHHHHHHHHh
Q psy17788 321 KLPPKKLKPLYMKWLKLEEQ 340 (365)
Q Consensus 321 ~l~~~~~~~~~~~~l~~e~~ 340 (365)
.-+|...+..+.-|++|-..
T Consensus 419 ~e~p~~e~q~~~FWmdF~le 438 (1226)
T KOG4279|consen 419 IEPPEKEKQQFLFWMDFFLE 438 (1226)
T ss_pred CCCCCcchHHHHHHHHHHHH
Confidence 22455667777778887543
No 455
>KOG3783|consensus
Probab=48.82 E-value=2.9e+02 Score=27.65 Aligned_cols=147 Identities=12% Similarity=0.035 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHcCCCHH-------HHHHHHHHHHHhCCH--HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCh
Q psy17788 167 KESLQECLHEAVRCNDETK-------VYMNMMEIYAASAQI--RDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQK 237 (365)
Q Consensus 167 ~~~a~~v~~ral~~~~~~~-------~~~~l~~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~ 237 (365)
.+..+.++.-+...+-... .|...+.++...+.. +...+.+....+.+ |.++...+..+..+...|+.
T Consensus 207 ~egl~~Lw~~a~~~s~~~~i~~l~L~~y~~~~~~~~~~p~~d~~~~~~~Ll~~~~~~---p~ga~wll~~ar~l~~~g~~ 283 (546)
T KOG3783|consen 207 DEGLRLLWEAAKQRNFRGAIALLALLCYYQFISFVLGTPNPDGEECEKALKKYRKRY---PKGALWLLMEARILSIKGNS 283 (546)
T ss_pred HHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHhHHHHHhC---CCCccHHHHHHHHHHHcccH
Confidence 4445556666655421111 223334445555543 33344444445556 88999999999999999998
Q ss_pred HHHHHHHHHHHhcCCCcc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHH---------HHHhcCC
Q psy17788 238 DTARHILQRGLNNLPPAV--HVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVD---------MLVKSDR 306 (365)
Q Consensus 238 ~~A~~~l~ral~~~p~~~--~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~---------~~~~~g~ 306 (365)
+.|..+++.++. +.-. +.-.+...|-+....-++.+|-..+..+....-.+...+..++- +....|+
T Consensus 284 eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~n 361 (546)
T KOG3783|consen 284 EAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGN 361 (546)
T ss_pred HHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccc
Confidence 888888888876 3222 22233344555555667888888888887766554444444431 1222345
Q ss_pred hHHHHHHHHHHH
Q psy17788 307 VDLGRQVIQRAV 318 (365)
Q Consensus 307 ~~~Ar~~~eral 318 (365)
-+.+..+++...
T Consensus 362 e~~a~~~~k~~~ 373 (546)
T KOG3783|consen 362 EEKAQLYFKVGE 373 (546)
T ss_pred hhHHHHHHHHHH
Confidence 555555555443
No 456
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=48.82 E-value=88 Score=27.90 Aligned_cols=43 Identities=12% Similarity=0.041 Sum_probs=26.5
Q ss_pred hHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHh
Q psy17788 98 PDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALT 140 (365)
Q Consensus 98 ~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~ 140 (365)
...|.+|+...|.+...|.++|..+...|+.=.|.-.|-|++-
T Consensus 2 ~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~ 44 (278)
T PF10373_consen 2 ERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLA 44 (278)
T ss_dssp HHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHh
Confidence 4556666666666666666666666666666666666666664
No 457
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=48.78 E-value=2.7e+02 Score=27.19 Aligned_cols=89 Identities=9% Similarity=0.072 Sum_probs=60.4
Q ss_pred HHHHHcccCHHHHHHHHHHHHhhccCccc-----------cchHHHH--HHHHHHHHHhCCHHHHHHHHHHHHHcCCCH-
Q psy17788 119 MAYHLQATEIEKARSIARRALTVINIRNE-----------EDRLNVW--TSLLNLEHLYGTKESLQECLHEAVRCNDET- 184 (365)
Q Consensus 119 ~~~~~~~~~~e~A~~~~~raL~~~p~~~~-----------~~~~~~w--~~~~~l~~~~g~~~~a~~v~~ral~~~~~~- 184 (365)
+..+.+++.+..|..-|..||..+..... .....-| ..+.-+|.+.++.+-|..--.|.|.++|..
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 44557888888888889888886543211 1112223 356778899999999999999999999853
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHH
Q psy17788 185 KVYMNMMEIYAASAQIRDLESTV 207 (365)
Q Consensus 185 ~~~~~l~~~~~~~g~~~~A~~~~ 207 (365)
.-|+.-+.++....++.+|-.-+
T Consensus 263 rnHLrqAavfR~LeRy~eAarSa 285 (569)
T PF15015_consen 263 RNHLRQAAVFRRLERYSEAARSA 285 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666665533
No 458
>KOG4814|consensus
Probab=48.50 E-value=3.3e+02 Score=28.12 Aligned_cols=94 Identities=16% Similarity=-0.002 Sum_probs=64.5
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHhcCC---CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Q psy17788 191 MEIYAASAQIRDLESTVKLLLKKAGQT---HSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAE 267 (365)
Q Consensus 191 ~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~ 267 (365)
+.-..+..++..+.+.|...++-.+.+ ....++...++-+|+...+.+.|.++++.|=+..|..+--..+. -...
T Consensus 361 A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~--~~~~ 438 (872)
T KOG4814|consen 361 AKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM--LQSF 438 (872)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH--HHHH
Confidence 333446678888899998888766211 12256777888888888999999999999988888754333322 2233
Q ss_pred HHcCCHHHHHHHHHHHHHh
Q psy17788 268 NKFGDASRAQALLEHTLTS 286 (365)
Q Consensus 268 ~~~g~~e~A~~~fe~~l~~ 286 (365)
..-|.-++|..........
T Consensus 439 ~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 439 LAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHhcchHHHHHHHHHHHhh
Confidence 3567778888877766654
No 459
>KOG0529|consensus
Probab=48.44 E-value=2.6e+02 Score=26.99 Aligned_cols=158 Identities=11% Similarity=0.084 Sum_probs=101.6
Q ss_pred CChHHHHHHhhcCCCCHHHHHHHHHHH-Hccc-----------CHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHH
Q psy17788 96 VSPDGFDRMLLGQPNNSELWVKYMAYH-LQAT-----------EIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHL 163 (365)
Q Consensus 96 ~a~~~fe~~l~~~p~~~~~w~~~~~~~-~~~~-----------~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~ 163 (365)
+.+..=..++..+|....+|.--=..+ .+.. -++.-..+...||+..| ....+|.-...+..+
T Consensus 47 e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~np-----ksY~aW~hR~w~L~~ 121 (421)
T KOG0529|consen 47 EHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNP-----KSYGAWHHRKWVLQK 121 (421)
T ss_pred HHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCc-----hhHHHHHHHHHHHHh
Confidence 677777888899999999997544333 2222 34555677788888888 778899888777665
Q ss_pred hC--CHHHHHHHHHHHHHcCC-CHHHHH--HH-HHHHHHh-CCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH---
Q psy17788 164 YG--TKESLQECLHEAVRCND-ETKVYM--NM-MEIYAAS-AQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLR--- 233 (365)
Q Consensus 164 ~g--~~~~a~~v~~ral~~~~-~~~~~~--~l-~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~--- 233 (365)
.+ ++..=..+.+++++.+| +...|. ++ +....+. ....+=.+...+++... +.|..+|-....++-.
T Consensus 122 ~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~n---fSNYsaWhyRs~lL~~l~~ 198 (421)
T KOG0529|consen 122 NPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDN---FSNYSAWHYRSLLLSTLHP 198 (421)
T ss_pred CCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhcc---chhhhHHHHHHHHHHHhcc
Confidence 55 46778899999999887 345552 22 2222222 23455567778888776 8888898887776653
Q ss_pred ---cCC---hH---HHHHHHHHHHhcCCCcchHHHHH
Q psy17788 234 ---LGQ---KD---TARHILQRGLNNLPPAVHVTLIT 261 (365)
Q Consensus 234 ---~g~---~~---~A~~~l~ral~~~p~~~~~~~~~ 261 (365)
.|+ .+ .-...-..|+-.+|.+...++|.
T Consensus 199 ~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~ 235 (421)
T KOG0529|consen 199 KEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYH 235 (421)
T ss_pred ccccCccCCHHHHHHHHHHHHHHHhcCccccceeeeh
Confidence 231 11 12233344555678777666553
No 460
>KOG4014|consensus
Probab=46.63 E-value=1.9e+02 Score=24.83 Aligned_cols=177 Identities=12% Similarity=0.063 Sum_probs=82.6
Q ss_pred HHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHc-
Q psy17788 161 EHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAA-----SAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRL- 234 (365)
Q Consensus 161 ~~~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~- 234 (365)
+....+++.|.+||+.-..-+..+..-+.++..+.. .++...|.+.|..++.. +.+..-..++.++..-
T Consensus 45 Egi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~-----n~~~aC~~~gLl~~~g~ 119 (248)
T KOG4014|consen 45 EGIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA-----NIPQACRYLGLLHWNGE 119 (248)
T ss_pred HHHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc-----CCHHHHhhhhhhhccCc
Confidence 334445666666666655544445555555444331 23456666666666653 2444444444443321
Q ss_pred ----C--ChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChH
Q psy17788 235 ----G--QKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVD 308 (365)
Q Consensus 235 ----g--~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~ 308 (365)
+ +..+|+.++.|+-...-.. .-..+ ..+ ..|..+++ ...-|....- ..-+..++-..+.+
T Consensus 120 ~~r~~dpd~~Ka~~y~traCdl~~~~-aCf~L---S~m--~~~g~~k~-------~t~ap~~g~p-~~~~~~~~~~kDMd 185 (248)
T KOG4014|consen 120 KDRKADPDSEKAERYMTRACDLEDGE-ACFLL---STM--YMGGKEKF-------KTNAPGEGKP-LDRAELGSLSKDMD 185 (248)
T ss_pred CCccCCCCcHHHHHHHHHhccCCCch-HHHHH---HHH--Hhccchhh-------cccCCCCCCC-cchhhhhhhhHhHH
Confidence 1 2456666666665443331 11111 111 11222221 1112210000 00112222235677
Q ss_pred HHHHHHHHHHhCCCCCCCcHHHHHHHHHHHH-hc---CCHHHHHHHHHHHHHHHHhh
Q psy17788 309 LGRQVIQRAVTQKLPPKKLKPLYMKWLKLEE-QY---GDAEAVENVKKEIEQYVRNS 361 (365)
Q Consensus 309 ~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~-~~---G~~~~a~~v~~kA~~~v~~~ 361 (365)
.|..+--+|..+..+. .-...-.+++ .- .|.+.|+.+..+|.+..+..
T Consensus 186 ka~qfa~kACel~~~~-----aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~ 237 (248)
T KOG4014|consen 186 KALQFAIKACELDIPQ-----ACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEEL 237 (248)
T ss_pred HHHHHHHHHHhcCChH-----HHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHH
Confidence 8888888888753221 1111112221 12 26789999999999987653
No 461
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=46.32 E-value=1.6e+02 Score=24.03 Aligned_cols=28 Identities=14% Similarity=0.088 Sum_probs=15.4
Q ss_pred HHHHHHHHccc-CHHHHHHHHHHHHhhcc
Q psy17788 116 VKYMAYHLQAT-EIEKARSIARRALTVIN 143 (365)
Q Consensus 116 ~~~~~~~~~~~-~~e~A~~~~~raL~~~p 143 (365)
+..|..++..| +.++|...|-+||...|
T Consensus 94 V~~GE~L~~~g~~~~ega~hf~nAl~Vc~ 122 (148)
T TIGR00985 94 VQLGEELMAQGTNVDEGAVHFYNALKVYP 122 (148)
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHhCC
Confidence 44555555555 55555555555655444
No 462
>KOG2908|consensus
Probab=45.95 E-value=2.6e+02 Score=26.31 Aligned_cols=90 Identities=10% Similarity=0.190 Sum_probs=55.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHhC-----CCC-hhHHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCCcHHHHHHH
Q psy17788 266 AENKFGDASRAQALLEHTLTSY-----PAR-VDVWGVYVDMLVKSDRVDLGRQVIQRAVT-----QKLPPKKLKPLYMKW 334 (365)
Q Consensus 266 ~~~~~g~~e~A~~~fe~~l~~~-----P~~-~~~w~~~~~~~~~~g~~~~Ar~~~eral~-----~~l~~~~~~~~~~~~ 334 (365)
+..+.++.++|.++++++.... |+- ..+....+.++...|+...+++.++..-+ ...++.-...++..-
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~ls 163 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLS 163 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHH
Confidence 3345678888888888887642 211 12334456677778888888888777655 233443344455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHH
Q psy17788 335 LKLEEQYGDAEAVENVKKEIEQYV 358 (365)
Q Consensus 335 l~~e~~~G~~~~a~~v~~kA~~~v 358 (365)
-.+++..|+.++. |.-|+.|.
T Consensus 164 sqYyk~~~d~a~y---Yr~~L~YL 184 (380)
T KOG2908|consen 164 SQYYKKIGDFASY---YRHALLYL 184 (380)
T ss_pred HHHHHHHHhHHHH---HHHHHHHh
Confidence 6677777776653 66666664
No 463
>KOG2758|consensus
Probab=45.61 E-value=2.6e+02 Score=26.18 Aligned_cols=175 Identities=15% Similarity=0.069 Sum_probs=96.9
Q ss_pred CCCCHHHHHHHHHHHHcccCHHHHHHHH--HHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC--
Q psy17788 108 QPNNSELWVKYMAYHLQATEIEKARSIA--RRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-- 183 (365)
Q Consensus 108 ~p~~~~~w~~~~~~~~~~~~~e~A~~~~--~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-- 183 (365)
-|+.....++|+.|....|++..|-.++ -|++-..|.+ +..++..+-+.-+....+++.|.+-+.|.-.+.++
T Consensus 125 ~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~---n~lsalwGKlASEIL~qnWd~A~edL~rLre~IDs~~ 201 (432)
T KOG2758|consen 125 TPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDR---NYLSALWGKLASEILTQNWDGALEDLTRLREYIDSKS 201 (432)
T ss_pred CHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcch---hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcccc
Confidence 3778899999999999999999987753 4555434422 33444444444566677899998888776555431
Q ss_pred ---------HH---HHHHHHHHHHHhCCHHHHHHHH------HHHHHHhcCCCCcHHHHHHHHHHHHHc-CChHHHHHHH
Q psy17788 184 ---------TK---VYMNMMEIYAASAQIRDLESTV------KLLLKKAGQTHSSVNIYLQCATLLLRL-GQKDTARHIL 244 (365)
Q Consensus 184 ---------~~---~~~~l~~~~~~~g~~~~A~~~~------~~al~~~~~~~~~~~~~~~~a~~~~~~-g~~~~A~~~l 244 (365)
.. +++.+.-++..-+.-+..+++| --+++. ..|-+...++....-. .....+.+=+
T Consensus 202 f~~~~~~l~qRtWLiHWslfv~fnhpkgrd~iid~fly~p~YLNaIQt-----~cPhllRYLatAvvtnk~~rr~~lkdl 276 (432)
T KOG2758|consen 202 FSTSAQQLQQRTWLIHWSLFVFFNHPKGRDTIIDMFLYQPPYLNAIQT-----SCPHLLRYLATAVVTNKRRRRNRLKDL 276 (432)
T ss_pred cccHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHccCHHHHHHHHh-----hCHHHHHHHHHHhhcchHhhHHHHHHH
Confidence 11 2333444444344444444433 223332 2334444444333332 2233333434
Q ss_pred HHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q psy17788 245 QRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARV 291 (365)
Q Consensus 245 ~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~ 291 (365)
-+.++..... .-.-+..|..|.+-.=+++.|+..+..+=+.--+++
T Consensus 277 vkVIqqE~ys-YkDPiteFl~clyvn~DFdgAq~kl~eCeeVl~nDf 322 (432)
T KOG2758|consen 277 VKVIQQESYS-YKDPITEFLECLYVNYDFDGAQKKLRECEEVLVNDF 322 (432)
T ss_pred HHHHHHhccc-cCCcHHHHHHHHhhccchHHHHHHHHHHHHHHhcch
Confidence 4444432110 111235667777888899999888766654444443
No 464
>KOG1972|consensus
Probab=45.19 E-value=1.7e+02 Score=30.81 Aligned_cols=36 Identities=14% Similarity=0.170 Sum_probs=23.1
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q psy17788 218 HSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPP 253 (365)
Q Consensus 218 ~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~ 253 (365)
|.++..|..|..++.+.++.+....++-+|+...|-
T Consensus 833 ~~~~~~WR~yl~~lskl~~~~~~~~~~tkA~~sCpW 868 (913)
T KOG1972|consen 833 PDENSKWRDYLEALSKLLNKERSKAASTKALDSCPW 868 (913)
T ss_pred CcchhHHHHHHHHHHHhhhhhhhHHHHHHHhhcCch
Confidence 455666666666666666666666666666666665
No 465
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=44.84 E-value=1.1e+02 Score=24.78 Aligned_cols=45 Identities=24% Similarity=0.209 Sum_probs=27.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC
Q psy17788 261 TRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSD 305 (365)
Q Consensus 261 ~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g 305 (365)
...+.-.+..|++.-|..+...++..+|++..+....++.+...|
T Consensus 74 l~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 74 LERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 344555566777777777777777777777777666666665543
No 466
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=44.28 E-value=83 Score=21.61 Aligned_cols=20 Identities=5% Similarity=-0.029 Sum_probs=12.1
Q ss_pred HHhCCHHHHHHHHHHHHHHh
Q psy17788 195 AASAQIRDLESTVKLLLKKA 214 (365)
Q Consensus 195 ~~~g~~~~A~~~~~~al~~~ 214 (365)
.+.|++++|+.+|..++..+
T Consensus 16 D~~g~~~~A~~~Y~~ai~~l 35 (69)
T PF04212_consen 16 DEAGNYEEALELYKEAIEYL 35 (69)
T ss_dssp HHTTSHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHH
Confidence 45566666666666665543
No 467
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=43.84 E-value=56 Score=23.20 Aligned_cols=19 Identities=11% Similarity=-0.171 Sum_probs=11.8
Q ss_pred HhCCHHHHHHHHHHHHHHh
Q psy17788 196 ASAQIRDLESTVKLLLKKA 214 (365)
Q Consensus 196 ~~g~~~~A~~~~~~al~~~ 214 (365)
..|++++|..+|..++..|
T Consensus 18 ~~g~y~eA~~lY~~ale~~ 36 (75)
T cd02684 18 QRGDAAAALSLYCSALQYF 36 (75)
T ss_pred HhccHHHHHHHHHHHHHHH
Confidence 4566666666666666554
No 468
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=43.64 E-value=78 Score=22.61 Aligned_cols=20 Identities=0% Similarity=-0.087 Sum_probs=12.7
Q ss_pred HHhCCHHHHHHHHHHHHHHh
Q psy17788 195 AASAQIRDLESTVKLLLKKA 214 (365)
Q Consensus 195 ~~~g~~~~A~~~~~~al~~~ 214 (365)
-+.|++++|..+|..++..+
T Consensus 17 D~~g~y~eAl~~Y~~aie~l 36 (77)
T cd02683 17 DQEGRFQEALVCYQEGIDLL 36 (77)
T ss_pred HHhccHHHHHHHHHHHHHHH
Confidence 45566677766666666554
No 469
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=43.10 E-value=2.4e+02 Score=24.99 Aligned_cols=28 Identities=7% Similarity=0.049 Sum_probs=21.4
Q ss_pred HHHHHHHHcccCHHHHHHHHHHHHhhcc
Q psy17788 116 VKYMAYHLQATEIEKARSIARRALTVIN 143 (365)
Q Consensus 116 ~~~~~~~~~~~~~e~A~~~~~raL~~~p 143 (365)
+.++....+.+++++...+..+++...|
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~ 32 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEMNP 32 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCC
Confidence 4566667788888888888888888644
No 470
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=42.64 E-value=61 Score=25.53 Aligned_cols=36 Identities=17% Similarity=0.244 Sum_probs=23.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHH
Q psy17788 262 RFALAENKFGDASRAQALLEHTLTSYPARVDVWGVY 297 (365)
Q Consensus 262 ~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~ 297 (365)
..|..+...|+.++|...|-+++..+|.-.++...|
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL~i~ 103 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQPAELLQIY 103 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 346666667888888888888887777755444433
No 471
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=42.49 E-value=2.6e+02 Score=25.18 Aligned_cols=138 Identities=12% Similarity=0.115 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHcC-------CCH
Q psy17788 113 ELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTK-ESLQECLHEAVRCN-------DET 184 (365)
Q Consensus 113 ~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~-~~a~~v~~ral~~~-------~~~ 184 (365)
.+...-+..+++.++..-|..+.--.++.....+.......-..++.+....+.. ..-.++..+|++-. .++
T Consensus 11 dLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp 90 (260)
T PF04190_consen 11 DLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDP 90 (260)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--H
T ss_pred HHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCH
Confidence 3444445555666666655555444444322111111122223444444444322 23445555555432 256
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----------h--cCCCCcHHHHHHHHH-HHHHcCChHHHHHHHHHHHhc
Q psy17788 185 KVYMNMMEIYAASAQIRDLESTVKLLLKK-----------A--GQTHSSVNIYLQCAT-LLLRLGQKDTARHILQRGLNN 250 (365)
Q Consensus 185 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----------~--~~~~~~~~~~~~~a~-~~~~~g~~~~A~~~l~ral~~ 250 (365)
.+|..++..|.+.|++.+|+..|-..-.. . ...+....+++..+- -|+-.++...|...+..-++.
T Consensus 91 ~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 91 ELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 78889999999999998888765222110 0 011334444444333 345567777777766555544
No 472
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=41.93 E-value=4.1e+02 Score=27.35 Aligned_cols=186 Identities=15% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHH-------HHHHHHHHHHHc----CC---
Q psy17788 117 KYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKE-------SLQECLHEAVRC----ND--- 182 (365)
Q Consensus 117 ~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~-------~a~~v~~ral~~----~~--- 182 (365)
..+-++++.|.++.|.++....-..+. ....-...|+..+....+.. ....-|.+.++. +|
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~-----~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~ 190 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQ-----KIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKR 190 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS------TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhc-----chhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHH
Q ss_pred -----------------------CHHHHHHHHHHHHHhCCHHH-----HHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHH
Q psy17788 183 -----------------------ETKVYMNMMEIYAASAQIRD-----LESTVKLLLKKAGQT-HSSVNIYLQCATLLLR 233 (365)
Q Consensus 183 -----------------------~~~~~~~l~~~~~~~g~~~~-----A~~~~~~al~~~~~~-~~~~~~~~~~a~~~~~ 233 (365)
..-+|++|..+-......+. ...-++..+..+|.. -....--..|..++.-
T Consensus 191 AvY~ilg~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~F~~~~~p~~Yf~~LlL 270 (613)
T PF04097_consen 191 AVYKILGRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGESHFNAGSNPLLYFQVLLL 270 (613)
T ss_dssp HHHHHHHT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-GGGCTT------HHHHHHH
T ss_pred HHHHHHhcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhchhhcccchhHHHHHHHHHH
Q ss_pred cCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------hhHHHHHHHHHHhcCCh
Q psy17788 234 LGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPAR------VDVWGVYVDMLVKSDRV 307 (365)
Q Consensus 234 ~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~------~~~w~~~~~~~~~~g~~ 307 (365)
.|+++.|..++-+ ......=-+.+|..+...|-..-....=...+...|.+ ..+...|+. ..+..++
T Consensus 271 tgqFE~AI~~L~~------~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~-~F~~td~ 343 (613)
T PF04097_consen 271 TGQFEAAIEFLYR------NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTR-SFEITDP 343 (613)
T ss_dssp TT-HHHHHHHHHT--------T-HHHHHHHHHHHHHTT------------------------HHHHHHHHHH-TTTTT-H
T ss_pred HhhHHHHHHHHHh------hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHH-HHhccCH
Q ss_pred HHHHHHH
Q psy17788 308 DLGRQVI 314 (365)
Q Consensus 308 ~~Ar~~~ 314 (365)
..|..+|
T Consensus 344 ~~Al~Y~ 350 (613)
T PF04097_consen 344 REALQYL 350 (613)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
No 473
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=41.39 E-value=2.5e+02 Score=24.81 Aligned_cols=28 Identities=14% Similarity=0.190 Sum_probs=17.3
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcCC
Q psy17788 155 TSLLNLEHLYGTKESLQECLHEAVRCND 182 (365)
Q Consensus 155 ~~~~~l~~~~g~~~~a~~v~~ral~~~~ 182 (365)
+.++.+....|.++.....+++++..++
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~ 32 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEMNP 32 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCC
Confidence 3455556666666666666666666655
No 474
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=40.83 E-value=72 Score=22.77 Aligned_cols=19 Identities=11% Similarity=0.055 Sum_probs=15.6
Q ss_pred HHhcCChHHHHHHHHHHHh
Q psy17788 301 LVKSDRVDLGRQVIQRAVT 319 (365)
Q Consensus 301 ~~~~g~~~~Ar~~~eral~ 319 (365)
.-..|++++|..+|..++.
T Consensus 16 eD~~gny~eA~~lY~~ale 34 (75)
T cd02680 16 EDEKGNAEEAIELYTEAVE 34 (75)
T ss_pred hhHhhhHHHHHHHHHHHHH
Confidence 4566889999999998887
No 475
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.82 E-value=1.6e+02 Score=22.40 Aligned_cols=64 Identities=13% Similarity=0.068 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCC
Q psy17788 166 TKESLQECLHEAVRCND--ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQ 236 (365)
Q Consensus 166 ~~~~a~~v~~ral~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~ 236 (365)
+.....+.++++-..+- ++-.|.+++-+|.++|+.+.+..-|++--..| |.+.. +.+|+++.++
T Consensus 52 Q~~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalF---PES~~----fmDFLmk~~k 117 (121)
T COG4259 52 QTAALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALF---PESGV----FMDFLMKNGK 117 (121)
T ss_pred HHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhC---ccchh----HHHHHHHccc
No 476
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=40.68 E-value=1.3e+02 Score=21.30 Aligned_cols=16 Identities=6% Similarity=-0.010 Sum_probs=9.0
Q ss_pred cCChHHHHHHHHHHHh
Q psy17788 304 SDRVDLGRQVIQRAVT 319 (365)
Q Consensus 304 ~g~~~~Ar~~~eral~ 319 (365)
.|++++|..+|..++.
T Consensus 19 ~g~y~eA~~lY~~ale 34 (75)
T cd02684 19 RGDAAAALSLYCSALQ 34 (75)
T ss_pred hccHHHHHHHHHHHHH
Confidence 3555556666555553
No 477
>KOG2062|consensus
Probab=40.54 E-value=4.6e+02 Score=27.58 Aligned_cols=223 Identities=12% Similarity=0.119 Sum_probs=117.2
Q ss_pred CChHHHHHHhhcCCCCH-----HHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHH
Q psy17788 96 VSPDGFDRMLLGQPNNS-----ELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESL 170 (365)
Q Consensus 96 ~a~~~fe~~l~~~p~~~-----~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a 170 (365)
...+.|+++-..--++. .+=+.++.+.+.....+.-...+.-|-.+.. ++..--++..-....+|..+.|
T Consensus 446 a~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~ETQH-----eki~RGl~vGiaL~~ygrqe~A 520 (929)
T KOG2062|consen 446 ANEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQETQH-----EKIIRGLAVGIALVVYGRQEDA 520 (929)
T ss_pred ccHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhhhhhH-----HHHHHHHHHhHHHHHhhhhhhh
Confidence 34556666533222211 2334444444555544433334443433322 2222233333344566777888
Q ss_pred HHHHHHHHHcCCCHH---HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHH--HHHHHHHHHHHcCChHHHHHHHH
Q psy17788 171 QECLHEAVRCNDETK---VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVN--IYLQCATLLLRLGQKDTARHILQ 245 (365)
Q Consensus 171 ~~v~~ral~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~a~~~~~~g~~~~A~~~l~ 245 (365)
..+.++++.-.++.- -.+.++..|.-+|+..-.+.++.-++.-. ..+.. +-+.+|-++ ..+++....+.+
T Consensus 521 d~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~---nDDVrRaAVialGFVl--~~dp~~~~s~V~ 595 (929)
T KOG2062|consen 521 DPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDV---NDDVRRAAVIALGFVL--FRDPEQLPSTVS 595 (929)
T ss_pred HHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhccccccc---chHHHHHHHHHheeeE--ecChhhchHHHH
Confidence 888888876543322 22455666777787777777766665432 22222 122222222 345555544443
Q ss_pred HHHhcCCCcchHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh---hHHHHHHHHHHhc-----CChHHHHHHHH
Q psy17788 246 RGLNNLPPAVHVT--LITRFALAENKFGDASRAQALLEHTLTSYPARV---DVWGVYVDMLVKS-----DRVDLGRQVIQ 315 (365)
Q Consensus 246 ral~~~p~~~~~~--~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~---~~w~~~~~~~~~~-----g~~~~Ar~~~e 315 (365)
-.-++ .++|++ .-+.+|.++.-.|. ..|..+++-++. +|.++ -+.+..+.+.+.+ -++...|+.|+
T Consensus 596 lLses--~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~-D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~ 671 (929)
T KOG2062|consen 596 LLSES--YNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS-DPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLE 671 (929)
T ss_pred HHhhh--cChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc-ChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHH
Confidence 33222 233554 33445556666666 568888888875 66553 3455566666554 36788899999
Q ss_pred HHHhCCCCCCCcHHHHHHHHHH
Q psy17788 316 RAVTQKLPPKKLKPLYMKWLKL 337 (365)
Q Consensus 316 ral~~~l~~~~~~~~~~~~l~~ 337 (365)
++|. .+.....-+++..
T Consensus 672 kvI~-----dKhEd~~aK~GAi 688 (929)
T KOG2062|consen 672 KVIN-----DKHEDGMAKFGAI 688 (929)
T ss_pred HHhh-----hhhhHHHHHHHHH
Confidence 9986 2344555555544
No 478
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=40.41 E-value=1.6e+02 Score=23.21 Aligned_cols=28 Identities=25% Similarity=0.133 Sum_probs=16.1
Q ss_pred HHHHHHHHcccCHHHHHHHHHHHHhhcc
Q psy17788 116 VKYMAYHLQATEIEKARSIARRALTVIN 143 (365)
Q Consensus 116 ~~~~~~~~~~~~~e~A~~~~~raL~~~p 143 (365)
+.+|..++..|++++|...|-+||...|
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~ 94 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCP 94 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 4455555556666666666666666555
No 479
>PRK00218 putative lysogenization regulator; Reviewed
Probab=40.08 E-value=2.5e+02 Score=24.39 Aligned_cols=74 Identities=14% Similarity=0.091 Sum_probs=43.5
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy17788 99 DGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAV 178 (365)
Q Consensus 99 ~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral 178 (365)
....-++..+|.+...- |-...++....+.+...|...+.....+-...|+.++.+|.+......+...+.+-+
T Consensus 38 ~~l~Sll~~~p~st~~V------yG~~~~L~~Gl~~L~~~L~~~~~~~~~el~RY~~~ll~LErkL~k~~~~~~~L~~ri 111 (207)
T PRK00218 38 TSLNSLLVTNPSSTLDV------YGGEANLRLGLETLLNQLNSSRQGLDAELTRYALSLLALERKLSKNPDALNTLGERI 111 (207)
T ss_pred HHHHHHHhcCCCCHHHH------hCCcHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 34556667899887532 322334566666666666522222233556778899999987765555554444433
No 480
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=39.79 E-value=2e+02 Score=23.27 Aligned_cols=30 Identities=0% Similarity=0.005 Sum_probs=18.5
Q ss_pred HHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHH
Q psy17788 194 YAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQ 226 (365)
Q Consensus 194 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 226 (365)
..-.|..++..++..+.+... +-...-|+-
T Consensus 12 ~ildG~V~qGveii~k~v~Ss---ni~E~NWvI 41 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS---NIKEYNWVI 41 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS----HHHHTHHH
T ss_pred HHHhchHHHHHHHHHHHcCcC---Cccccceee
Confidence 445688888888888888764 334444543
No 481
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=39.44 E-value=1.4e+02 Score=30.32 Aligned_cols=75 Identities=11% Similarity=0.104 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHH
Q psy17788 166 TKESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHIL 244 (365)
Q Consensus 166 ~~~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l 244 (365)
..+.+....+.-+..... ....+.-+.++-..|..++|..+|++++... ++ ..++.++.-+.+.|-...|+.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~ 97 (578)
T PRK15490 23 KLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQN---ND--EARYEYARRLYNTGLAKDAQLIL 97 (578)
T ss_pred hHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhC---Cc--chHHHHHHHHHhhhhhhHHHHHH
Confidence 344555555554322211 1233444666777777888888888887764 33 77777888888888777777777
Q ss_pred H
Q psy17788 245 Q 245 (365)
Q Consensus 245 ~ 245 (365)
+
T Consensus 98 ~ 98 (578)
T PRK15490 98 K 98 (578)
T ss_pred H
Confidence 6
No 482
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=38.43 E-value=3.7e+02 Score=25.83 Aligned_cols=21 Identities=10% Similarity=0.031 Sum_probs=12.8
Q ss_pred HHHHhCCHHHHHHHHHHHHHH
Q psy17788 193 IYAASAQIRDLESTVKLLLKK 213 (365)
Q Consensus 193 ~~~~~g~~~~A~~~~~~al~~ 213 (365)
-..+.+++..|..+|..++.+
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r 159 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRR 159 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhc
Confidence 344556666666666666655
No 483
>KOG0529|consensus
Probab=37.64 E-value=3.9e+02 Score=25.87 Aligned_cols=101 Identities=13% Similarity=0.120 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHc--CCHH
Q psy17788 199 QIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQ--KDTARHILQRGLNNLPPAVHVTLITRFALAENKF--GDAS 274 (365)
Q Consensus 199 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~--~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~--g~~e 274 (365)
-.++-+.+...+++.+ |.+.-+|.....++.+.+- +..=+++.+++|+.+|.+.|.+-+.+|..-..+. ....
T Consensus 90 ~ld~eL~~~~~~L~~n---pksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~ 166 (421)
T KOG0529|consen 90 LLDEELKYVESALKVN---PKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEK 166 (421)
T ss_pred hhHHHHHHHHHHHHhC---chhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccch
Confidence 3455566777788888 9999999999999998764 5777889999999999999988888776544432 2344
Q ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHH
Q psy17788 275 RAQALLEHTLTSYPARVDVWGVYVDMLV 302 (365)
Q Consensus 275 ~A~~~fe~~l~~~P~~~~~w~~~~~~~~ 302 (365)
.=..+..+++..++.+..+|....-++.
T Consensus 167 ~El~ftt~~I~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 167 EELEFTTKLINDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred hHHHHHHHHHhccchhhhHHHHHHHHHH
Confidence 5577888999999999999987766654
No 484
>KOG1114|consensus
Probab=36.82 E-value=5.9e+02 Score=27.73 Aligned_cols=44 Identities=14% Similarity=0.117 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhc-CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHH
Q psy17788 80 ARIRQAEDELLQ-NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHL 123 (365)
Q Consensus 80 ~~~~~~e~~l~~-~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~ 123 (365)
+.++..+-..+. -...++.+.|+-+....|+...+....+.-++
T Consensus 1076 eairDlqv~~l~kl~~e~~~k~~~~l~s~ypd~lpll~~~l~kl~ 1120 (1304)
T KOG1114|consen 1076 EAIRDLQVSWLSKLADEEAEKIYNYLKSSYPDYLPLLEVRLAKLM 1120 (1304)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcccchHHHHHHHHhh
Confidence 445555544444 22234778888888888877666655554443
No 485
>KOG4521|consensus
Probab=36.22 E-value=6.5e+02 Score=28.07 Aligned_cols=183 Identities=14% Similarity=0.085 Sum_probs=96.7
Q ss_pred HHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHH------HhCCH-HHHHHHHHHHHHcCCCHHHHHH
Q psy17788 117 KYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEH------LYGTK-ESLQECLHEAVRCNDETKVYMN 189 (365)
Q Consensus 117 ~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~------~~g~~-~~a~~v~~ral~~~~~~~~~~~ 189 (365)
.++.+++..|+..+|..+|.+|+.-+.. .+....+..... ..|.. ..... + ..-|..
T Consensus 925 mlg~~yl~tge~~kAl~cF~~a~Sg~ge------~~aL~~lv~~~~p~~~sv~dG~t~s~e~t----~------lhYYlk 988 (1480)
T KOG4521|consen 925 MLGIAYLGTGEPVKALNCFQSALSGFGE------GNALRKLVYFLLPKRFSVADGKTPSEELT----A------LHYYLK 988 (1480)
T ss_pred hhheeeecCCchHHHHHHHHHHhhcccc------HHHHHHHHHHhcCCCCchhcCCCCCchHH----H------HHHHHH
Confidence 3444467788888888888888875552 122222222110 11110 00000 0 112344
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc-hHHHHHHHHHHH
Q psy17788 190 MMEIYAASAQIRDLESTVKLLLKKAGQT-HSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV-HVTLITRFALAE 267 (365)
Q Consensus 190 l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~-~~~~~~~~a~~~ 267 (365)
..+++.+.|-.+.+.++-..|+...+.. |.-+.+....-..+...|.+-+|...+ -.+|... .-..+.++...+
T Consensus 989 v~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai----~~npdserrrdcLRqlvivL 1064 (1480)
T KOG4521|consen 989 VVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAI----LRNPDSERRRDCLRQLVIVL 1064 (1480)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHH----HcCCcHHHHHHHHHHHHHHH
Confidence 4677888888889999888888876321 333344555555666667766664432 2345421 234667777777
Q ss_pred HHcCCHHH------------HHH-HHHHHHHhCCCC-hhHHHHHHHHHHhcCChHHH-HHHHHHHHh
Q psy17788 268 NKFGDASR------------AQA-LLEHTLTSYPAR-VDVWGVYVDMLVKSDRVDLG-RQVIQRAVT 319 (365)
Q Consensus 268 ~~~g~~e~------------A~~-~fe~~l~~~P~~-~~~w~~~~~~~~~~g~~~~A-r~~~eral~ 319 (365)
+.+|..+. ... +++.+-+..|-. ...+..+-.+++..+++..| --+|+.+..
T Consensus 1065 fecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamr 1131 (1480)
T KOG4521|consen 1065 FECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMR 1131 (1480)
T ss_pred HhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence 77776542 222 445554444432 23333334445555555443 345666554
No 486
>TIGR02568 LcrE type III secretion regulator YopN/LcrE/InvE/MxiC. This protein is found in type III secretion operons and, in Yersinia is localized to the cell surface and is involved in the Low-Calicium Response (LCR), possibly by sensing the calcium concentration. In Salmonella, the gene is known as InvE and is believed to perform an essential role in the secretion process and interacts with the proteins SipBCD and SicA.//Altered name to reflect regulatory role. Added GO and role IDs. Negative regulation of type III secretion in Y pestis is mediated in part by a multiprotein complex that has been proposed to act as a physical impediment to type III secretion by blocking the entrance to the secretion apparatus prior to contact with mammalian cells. This complex is composed of YopN, its heterodimeric secretion chaperone SycN-YscB, and TyeA. PubMed: 15701523
Probab=35.92 E-value=3.1e+02 Score=24.29 Aligned_cols=30 Identities=10% Similarity=-0.152 Sum_probs=17.4
Q ss_pred CChHHHHHHhhcCCCCHHHHHHHHHHHHcc
Q psy17788 96 VSPDGFDRMLLGQPNNSELWVKYMAYHLQA 125 (365)
Q Consensus 96 ~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~ 125 (365)
........+....|+.+..|+.+.......
T Consensus 77 ~~~~ll~~l~~~f~D~s~~~laL~~ll~~~ 106 (240)
T TIGR02568 77 GLEQLLALARGAFPDPSDQALALRAALQRL 106 (240)
T ss_pred CHHHHHHHHHhhCCChHHHHHHHHHHHHhc
Confidence 333455555566677777777666655433
No 487
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=35.60 E-value=1.5e+02 Score=23.69 Aligned_cols=32 Identities=16% Similarity=0.226 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHHHhCCCChhHHHHHHHHHHh
Q psy17788 272 DASRAQALLEHTLTSYPARVDVWGVYVDMLVK 303 (365)
Q Consensus 272 ~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~ 303 (365)
+.+.|..+|+.++..+|+...++..|++.+..
T Consensus 91 e~e~Ae~vY~el~~~~P~HLpaHla~i~~lDS 122 (139)
T PF12583_consen 91 EPENAEQVYEELLEAHPDHLPAHLAMIQNLDS 122 (139)
T ss_dssp -HHHHHHHHHHHHHH-TT-THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCcchHHHHHHHHHccCc
Confidence 55888999999999999998888888876644
No 488
>KOG1497|consensus
Probab=35.36 E-value=3.8e+02 Score=25.12 Aligned_cols=62 Identities=19% Similarity=0.290 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCC----CCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy17788 186 VYMNMMEIYAASAQIRDLESTVKLLLKKAGQT----HSSVNIYLQCATLLLRLGQKDTARHILQRG 247 (365)
Q Consensus 186 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~a~~~~~~g~~~~A~~~l~ra 247 (365)
+-.+++.+|.+.+++..|-..+.-.-..-|.. ..-....+.++++|+..++..+|..+..|+
T Consensus 105 irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRa 170 (399)
T KOG1497|consen 105 IRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRA 170 (399)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 44777888888888888877664332211100 112346788888899888888888888886
No 489
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=35.15 E-value=46 Score=23.75 Aligned_cols=44 Identities=18% Similarity=0.276 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q psy17788 238 DTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARV 291 (365)
Q Consensus 238 ~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~ 291 (365)
+.|..+..+|++.+.. |....-.-.+.+|..++.+++..+|+..
T Consensus 4 ~~A~~~a~~AVe~D~~----------gr~~eAi~~Y~~aIe~L~q~~~~~pD~~ 47 (75)
T cd02682 4 EMARKYAINAVKAEKE----------GNAEDAITNYKKAIEVLSQIVKNYPDSP 47 (75)
T ss_pred HHHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHHHHHHHHhCCChH
No 490
>KOG2066|consensus
Probab=34.56 E-value=5.8e+02 Score=26.97 Aligned_cols=31 Identities=19% Similarity=0.045 Sum_probs=21.8
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy17788 218 HSSVNIYLQCATLLLRLGQKDTARHILQRGL 248 (365)
Q Consensus 218 ~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral 248 (365)
..+..+.-.+|.+|...|++..|..+|-.+.
T Consensus 502 Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 502 SESTALLEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred ccchhHHHHHHHHHHHccChHHHHHHHHhcc
Confidence 3344555568888888888888887776543
No 491
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=34.55 E-value=89 Score=22.31 Aligned_cols=20 Identities=5% Similarity=-0.150 Sum_probs=13.0
Q ss_pred HHhCCHHHHHHHHHHHHHHh
Q psy17788 195 AASAQIRDLESTVKLLLKKA 214 (365)
Q Consensus 195 ~~~g~~~~A~~~~~~al~~~ 214 (365)
-+.|++++|..+|..++..+
T Consensus 17 D~~g~y~eA~~~Y~~aie~l 36 (76)
T cd02681 17 DQEGRYSEAVFYYKEAAQLL 36 (76)
T ss_pred HHccCHHHHHHHHHHHHHHH
Confidence 45677777777776666554
No 492
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=34.12 E-value=3.8e+02 Score=24.76 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=20.0
Q ss_pred HHHHHHHHcccCHHHHHHHHHHHHhh
Q psy17788 116 VKYMAYHLQATEIEKARSIARRALTV 141 (365)
Q Consensus 116 ~~~~~~~~~~~~~e~A~~~~~raL~~ 141 (365)
...+.-..+.+++++|...|.+.|..
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~k 32 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGK 32 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcC
Confidence 56666667788888888888888874
No 493
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=33.68 E-value=49 Score=31.62 Aligned_cols=19 Identities=16% Similarity=0.429 Sum_probs=13.0
Q ss_pred CCcHHHHHHHHHHHHHcCC
Q psy17788 218 HSSVNIYLQCATLLLRLGQ 236 (365)
Q Consensus 218 ~~~~~~~~~~a~~~~~~g~ 236 (365)
..+|..|...|.++...|+
T Consensus 347 ~ddPetWv~vAEa~I~LGN 365 (404)
T PF12753_consen 347 EDDPETWVDVAEAMIDLGN 365 (404)
T ss_dssp S--TTHHHHHHHHHHHHHH
T ss_pred cCChhHHHHHHHHHhhhhc
Confidence 4577888888888877764
No 494
>KOG2066|consensus
Probab=32.31 E-value=5.7e+02 Score=27.03 Aligned_cols=158 Identities=10% Similarity=0.016 Sum_probs=80.1
Q ss_pred HHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy17788 117 KYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAA 196 (365)
Q Consensus 117 ~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~ 196 (365)
.-+.++++.+.+++|....+......|. ..-..+|..|++-+.-.|+++.|-...-+.+. .+...|......+..
T Consensus 361 Dhi~Wll~~k~yeeAl~~~k~~~~~~~~---~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g--n~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 361 DHIDWLLEKKKYEEALDAAKASIGNEER---FVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG--NNAAEWELWVFKFAE 435 (846)
T ss_pred hhHHHHHHhhHHHHHHHHHHhccCCccc---cchHHHHHHHHHHHHhcchHHHHHhhhHHHhc--chHHHHHHHHHHhcc
Confidence 3466777777777777766544332221 12357888888877777778777777666542 345566655555555
Q ss_pred hCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH--cCChHHHHHHHHHHHhc-------C-CC----cchHHHHHH
Q psy17788 197 SAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLR--LGQKDTARHILQRGLNN-------L-PP----AVHVTLITR 262 (365)
Q Consensus 197 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~--~g~~~~A~~~l~ral~~-------~-p~----~~~~~~~~~ 262 (365)
.+.......+. -. + .....+.++-.....++. ...+-+.+..|..-+-. . |. ...-.+..-
T Consensus 436 ~~~l~~Ia~~l---Pt-~-~~rL~p~vYemvLve~L~~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~ 510 (846)
T KOG2066|consen 436 LDQLTDIAPYL---PT-G-PPRLKPLVYEMVLVEFLASDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEV 510 (846)
T ss_pred ccccchhhccC---CC-C-CcccCchHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHH
Confidence 55544332221 00 0 001223333333322222 12233333333222111 0 11 111123344
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q psy17788 263 FALAENKFGDASRAQALLEHTL 284 (365)
Q Consensus 263 ~a~~~~~~g~~e~A~~~fe~~l 284 (365)
+|.++...|++..|..+|-++.
T Consensus 511 La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 511 LAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHccChHHHHHHHHhcc
Confidence 6777777888888888876654
No 495
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=31.75 E-value=1.9e+02 Score=20.51 Aligned_cols=14 Identities=7% Similarity=0.083 Sum_probs=7.1
Q ss_pred CChHHHHHHHHHHH
Q psy17788 305 DRVDLGRQVIQRAV 318 (365)
Q Consensus 305 g~~~~Ar~~~eral 318 (365)
|++++|..+|..++
T Consensus 20 ~~y~eA~~~Y~~~i 33 (75)
T cd02677 20 GDYEAAFEFYRAGV 33 (75)
T ss_pred hhHHHHHHHHHHHH
Confidence 44555555555554
No 496
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=31.20 E-value=3.5e+02 Score=23.38 Aligned_cols=138 Identities=14% Similarity=0.196 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHH-HHHHH
Q psy17788 186 VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSV-NIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVT-LITRF 263 (365)
Q Consensus 186 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~-~~~~~ 263 (365)
....+.......|+++.|-.+|--++... +-+. .+|--=+.++.+.+........|+......|...... .....
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~---~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~~~~~~~~~~~~~ 119 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCP---EVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYPSRKAFNQYYNRR 119 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCC---CCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHHHhhhccchhhhh
Confidence 34455566667899999999999998764 3333 4677777777777765555566666655444321000 00000
Q ss_pred -HHHHHHcCCHHHHHHHHHHHHHhCCCC--hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--CcHHHHHHHHHH
Q psy17788 264 -ALAENKFGDASRAQALLEHTLTSYPAR--VDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPK--KLKPLYMKWLKL 337 (365)
Q Consensus 264 -a~~~~~~g~~e~A~~~fe~~l~~~P~~--~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~--~~~~~~~~~l~~ 337 (365)
..--++.|.... .|.. +.+|..+.....+....+.+.++.+|+-++-+.|| ....+|.-++-.
T Consensus 120 ~~~pvfrsGs~t~-----------tp~y~~~~LW~~l~~~~~~~~~~~~~~~l~~ri~Elvl~PPy~d~~el~~i~~m~ 187 (199)
T PF04090_consen 120 IIAPVFRSGSRTH-----------TPLYAITWLWILLIQEEDRESELDSYQQLIERIDELVLSPPYMDDGELWFIRGMC 187 (199)
T ss_pred cccccccCCCccc-----------chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHH
Confidence 001112222211 1211 34566776666555555666666666665444444 445566655543
No 497
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=31.19 E-value=1.1e+02 Score=25.08 Aligned_cols=36 Identities=14% Similarity=0.296 Sum_probs=26.2
Q ss_pred HHHHHHHHcC-CHHHHHHHHHHHHHhCCCChhHHHHH
Q psy17788 262 RFALAENKFG-DASRAQALLEHTLTSYPARVDVWGVY 297 (365)
Q Consensus 262 ~~a~~~~~~g-~~e~A~~~fe~~l~~~P~~~~~w~~~ 297 (365)
..|.-+...| +.++|...|-++|..+|.-.++...|
T Consensus 95 ~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~~LL~iy 131 (148)
T TIGR00985 95 QLGEELMAQGTNVDEGAVHFYNALKVYPQPQQLLSIY 131 (148)
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4466666777 88888888888888888765555444
No 498
>KOG2475|consensus
Probab=31.16 E-value=2.9e+02 Score=27.58 Aligned_cols=54 Identities=20% Similarity=0.224 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC----CCCCChHHHHHHhhcCC-CCHHHHHHHHHH
Q psy17788 68 KAEKLAAAKAEEARIRQAEDELLQN----GEPVSPDGFDRMLLGQP-NNSELWVKYMAY 121 (365)
Q Consensus 68 ~~~~~~~~~~~e~~~~~~e~~l~~~----~~p~a~~~fe~~l~~~p-~~~~~w~~~~~~ 121 (365)
+.-|.+++++-|.+-+.+..++-.. ..|-+...|+=+-.... ++..+|......
T Consensus 181 r~~krr~rr~~e~e~~~Il~eYy~~gt~~g~ss~~~lfela~ml~k~~nd~LWlaiVGl 239 (587)
T KOG2475|consen 181 RASKRRERRKWEKERRTILFEYYESGTWHGSSSAVTLFELASMLGKDNNDLLWLAIVGL 239 (587)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcceeecCchHHHHHHHHHHhccchHHHHHHHHhcc
Confidence 3344555566666666666666652 35677788998877664 455678765443
No 499
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=30.94 E-value=8.1e+02 Score=27.57 Aligned_cols=74 Identities=14% Similarity=0.072 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHhc----CCCcchHHHHHHHHHHHHHcC--------------------CHHHHHHHHHHHHHhCCC---
Q psy17788 237 KDTARHILQRGLNN----LPPAVHVTLITRFALAENKFG--------------------DASRAQALLEHTLTSYPA--- 289 (365)
Q Consensus 237 ~~~A~~~l~ral~~----~p~~~~~~~~~~~a~~~~~~g--------------------~~e~A~~~fe~~l~~~P~--- 289 (365)
+++|+.+|.++... .|.-..+....+++.++.... ...++.....+++.....
T Consensus 361 ~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l~ 440 (1185)
T PF08626_consen 361 YEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDLS 440 (1185)
T ss_pred HHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhCC
Confidence 56788888887632 344445667778888777666 556666666666654332
Q ss_pred ---ChhHHHHHHHHHHhcCChHHH
Q psy17788 290 ---RVDVWGVYVDMLVKSDRVDLG 310 (365)
Q Consensus 290 ---~~~~w~~~~~~~~~~g~~~~A 310 (365)
...++..++.+|...|-.-+.
T Consensus 441 ~~dqi~i~~~lA~vy~~lG~~RK~ 464 (1185)
T PF08626_consen 441 VEDQIRIYSGLASVYGSLGFHRKK 464 (1185)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHH
Confidence 245677777777776644333
No 500
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=30.78 E-value=2e+02 Score=20.48 Aligned_cols=16 Identities=13% Similarity=0.115 Sum_probs=7.9
Q ss_pred HcCCHHHHHHHHHHHH
Q psy17788 269 KFGDASRAQALLEHTL 284 (365)
Q Consensus 269 ~~g~~e~A~~~fe~~l 284 (365)
+.|++++|..+|..+|
T Consensus 18 ~~g~y~eAl~~Y~~ai 33 (77)
T cd02683 18 QEGRFQEALVCYQEGI 33 (77)
T ss_pred HhccHHHHHHHHHHHH
Confidence 4455555555554443
Done!