Query psy17788
Match_columns 365
No_of_seqs 327 out of 2024
Neff 9.2
Searched_HMMs 29240
Date Fri Aug 16 23:02:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17788.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17788hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ond_A Cleavage stimulation fa 100.0 3.9E-28 1.3E-32 224.0 27.5 243 109-361 5-274 (308)
2 4e6h_A MRNA 3'-END-processing 99.9 2E-26 6.7E-31 233.0 23.8 243 112-360 302-573 (679)
3 1w3b_A UDP-N-acetylglucosamine 99.9 8.8E-25 3E-29 206.9 32.6 254 92-358 115-369 (388)
4 2ooe_A Cleavage stimulation fa 99.9 4.6E-25 1.6E-29 218.3 30.6 239 112-360 230-495 (530)
5 1w3b_A UDP-N-acetylglucosamine 99.9 3.9E-25 1.3E-29 209.3 28.7 253 92-357 81-334 (388)
6 4eqf_A PEX5-related protein; a 99.9 2.1E-25 7.2E-30 209.3 22.3 261 92-362 79-361 (365)
7 3hym_B Cell division cycle pro 99.9 2E-24 6.8E-29 198.4 27.9 258 89-359 33-301 (330)
8 1fch_A Peroxisomal targeting s 99.9 9.4E-25 3.2E-29 204.3 25.5 264 89-363 74-365 (368)
9 2ond_A Cleavage stimulation fa 99.9 5.1E-25 1.7E-29 203.1 22.6 215 96-320 34-270 (308)
10 2ooe_A Cleavage stimulation fa 99.9 3.4E-24 1.2E-28 212.0 30.1 247 101-356 2-349 (530)
11 3ieg_A DNAJ homolog subfamily 99.9 1.7E-23 5.8E-28 194.0 32.8 253 92-357 17-301 (359)
12 3cv0_A Peroxisome targeting si 99.9 2.4E-24 8.3E-29 197.6 24.3 260 92-363 35-321 (327)
13 4eqf_A PEX5-related protein; a 99.9 2.2E-24 7.5E-29 202.3 24.2 253 98-361 47-314 (365)
14 4e6h_A MRNA 3'-END-processing 99.9 1.3E-23 4.4E-28 212.4 31.4 255 95-358 49-408 (679)
15 2y4t_A DNAJ homolog subfamily 99.9 4.5E-23 1.5E-27 198.3 32.3 254 92-358 74-359 (450)
16 2y4t_A DNAJ homolog subfamily 99.9 3.7E-23 1.3E-27 198.9 31.4 257 92-360 40-327 (450)
17 2xpi_A Anaphase-promoting comp 99.9 3.1E-23 1.1E-27 206.7 31.0 256 92-360 319-582 (597)
18 3fp2_A TPR repeat-containing p 99.9 2.6E-22 8.9E-27 197.1 35.8 264 86-363 33-413 (537)
19 3ieg_A DNAJ homolog subfamily 99.9 6E-23 2.1E-27 190.3 29.4 261 92-360 51-338 (359)
20 2uy1_A Cleavage stimulation fa 99.9 2.7E-23 9.2E-28 203.9 28.3 253 96-360 66-416 (493)
21 1fch_A Peroxisomal targeting s 99.9 1.4E-23 4.8E-28 196.3 24.4 258 92-361 39-318 (368)
22 2xpi_A Anaphase-promoting comp 99.9 6.5E-23 2.2E-27 204.4 30.3 253 95-358 289-546 (597)
23 3hym_B Cell division cycle pro 99.9 4.1E-23 1.4E-27 189.6 26.2 244 92-346 70-323 (330)
24 2pl2_A Hypothetical conserved 99.9 3E-23 1E-27 181.5 23.7 200 109-319 2-213 (217)
25 2h6f_A Protein farnesyltransfe 99.9 5.9E-23 2E-27 195.1 22.6 241 103-357 88-348 (382)
26 2gw1_A Mitochondrial precursor 99.9 5.5E-22 1.9E-26 193.4 25.5 168 185-361 238-405 (514)
27 3u4t_A TPR repeat-containing p 99.9 7.7E-22 2.6E-26 176.8 23.9 239 112-360 3-253 (272)
28 3uq3_A Heat shock protein STI1 99.9 3.4E-21 1.2E-25 170.4 25.6 220 88-320 14-236 (258)
29 2h6f_A Protein farnesyltransfe 99.9 1.3E-21 4.5E-26 185.8 24.2 233 92-338 111-363 (382)
30 3cv0_A Peroxisome targeting si 99.9 3.5E-21 1.2E-25 176.4 24.7 237 111-360 20-272 (327)
31 2gw1_A Mitochondrial precursor 99.9 5.8E-22 2E-26 193.2 19.9 256 92-361 203-482 (514)
32 3fp2_A TPR repeat-containing p 99.9 2.2E-21 7.4E-26 190.6 23.6 252 95-360 219-494 (537)
33 3uq3_A Heat shock protein STI1 99.9 1.8E-20 6E-25 165.8 26.8 229 110-360 3-239 (258)
34 2uy1_A Cleavage stimulation fa 99.9 6.5E-21 2.2E-25 187.0 25.7 252 92-354 28-380 (493)
35 2q7f_A YRRB protein; TPR, prot 99.9 6.2E-21 2.1E-25 167.6 22.2 214 112-338 23-237 (243)
36 3u4t_A TPR repeat-containing p 99.9 5.5E-21 1.9E-25 171.2 20.8 242 89-340 14-267 (272)
37 2pl2_A Hypothetical conserved 99.9 1.7E-20 5.7E-25 164.0 22.5 198 149-355 3-212 (217)
38 2q7f_A YRRB protein; TPR, prot 99.9 3.8E-20 1.3E-24 162.5 24.4 204 92-305 37-241 (243)
39 2ho1_A Type 4 fimbrial biogene 99.9 5.1E-20 1.8E-24 163.1 24.6 204 107-320 31-238 (252)
40 2vq2_A PILW, putative fimbrial 99.9 1.4E-19 4.7E-24 156.6 26.4 205 107-319 3-210 (225)
41 4abn_A Tetratricopeptide repea 99.9 1.2E-20 4.1E-25 184.4 20.7 211 97-317 87-318 (474)
42 3sf4_A G-protein-signaling mod 99.9 4.2E-20 1.4E-24 174.3 23.0 275 89-363 19-342 (406)
43 3ro2_A PINS homolog, G-protein 99.9 4.3E-20 1.5E-24 168.8 21.5 272 91-362 18-337 (338)
44 3mkr_A Coatomer subunit epsilo 99.9 1.3E-19 4.4E-24 165.8 24.0 251 89-358 10-265 (291)
45 3vtx_A MAMA; tetratricopeptide 99.9 1.3E-19 4.3E-24 153.3 22.2 164 151-319 5-169 (184)
46 4a1s_A PINS, partner of inscut 99.8 5.3E-20 1.8E-24 174.8 21.1 276 88-363 57-378 (411)
47 3vtx_A MAMA; tetratricopeptide 99.8 7.8E-19 2.7E-23 148.4 24.1 174 109-292 2-176 (184)
48 2ho1_A Type 4 fimbrial biogene 99.8 2.2E-18 7.7E-23 152.4 28.1 196 91-296 50-248 (252)
49 1ouv_A Conserved hypothetical 99.8 8.1E-18 2.8E-22 151.3 31.1 227 108-358 2-252 (273)
50 1xnf_A Lipoprotein NLPI; TPR, 99.8 3.9E-19 1.3E-23 158.9 21.3 238 96-351 23-269 (275)
51 2vq2_A PILW, putative fimbrial 99.8 5.8E-18 2E-22 146.3 27.9 204 149-359 6-213 (225)
52 3mkr_A Coatomer subunit epsilo 99.8 8E-18 2.7E-22 153.9 26.1 212 92-320 48-264 (291)
53 1xnf_A Lipoprotein NLPI; TPR, 99.8 5.8E-18 2E-22 151.3 24.6 226 123-358 16-245 (275)
54 4g1t_A Interferon-induced prot 99.8 2.1E-18 7.3E-23 166.8 22.3 256 92-357 108-401 (472)
55 4i17_A Hypothetical protein; T 99.8 1.4E-17 4.9E-22 145.6 24.7 213 108-337 3-223 (228)
56 3nf1_A KLC 1, kinesin light ch 99.8 1.9E-18 6.5E-23 156.9 18.3 250 107-359 22-309 (311)
57 4g1t_A Interferon-induced prot 99.8 1.2E-17 4.2E-22 161.5 24.6 258 92-357 65-363 (472)
58 4a1s_A PINS, partner of inscut 99.8 6.1E-18 2.1E-22 160.5 21.9 253 109-362 45-337 (411)
59 4abn_A Tetratricopeptide repea 99.8 4.4E-18 1.5E-22 166.1 19.9 212 127-352 83-316 (474)
60 3sf4_A G-protein-signaling mod 99.8 1.5E-17 5.2E-22 156.7 22.9 253 109-362 6-301 (406)
61 1ouv_A Conserved hypothetical 99.8 1.6E-16 5.3E-21 142.9 28.0 208 92-320 20-251 (273)
62 4gyw_A UDP-N-acetylglucosamine 99.8 2E-17 7E-22 168.8 23.4 166 149-319 7-173 (723)
63 4gyw_A UDP-N-acetylglucosamine 99.8 7.2E-18 2.5E-22 172.1 19.7 173 107-289 4-177 (723)
64 4i17_A Hypothetical protein; T 99.8 3.7E-17 1.3E-21 143.0 21.6 198 150-360 6-212 (228)
65 3ro2_A PINS homolog, G-protein 99.8 2.9E-17 9.9E-22 149.9 21.6 252 111-363 4-298 (338)
66 3qky_A Outer membrane assembly 99.8 4.1E-17 1.4E-21 145.9 22.0 182 106-292 9-230 (261)
67 3ulq_A Response regulator aspa 99.8 5E-17 1.7E-21 153.6 23.6 258 99-363 85-374 (383)
68 3as5_A MAMA; tetratricopeptide 99.7 2.2E-16 7.4E-21 131.8 19.7 164 151-319 8-172 (186)
69 3as5_A MAMA; tetratricopeptide 99.7 4.9E-16 1.7E-20 129.7 21.6 171 111-291 7-178 (186)
70 3qky_A Outer membrane assembly 99.7 4.8E-16 1.6E-20 138.9 21.8 172 149-320 13-224 (261)
71 3nf1_A KLC 1, kinesin light ch 99.7 1.2E-17 4.3E-22 151.5 11.5 233 88-320 36-307 (311)
72 2pzi_A Probable serine/threoni 99.7 2.2E-16 7.6E-21 160.9 21.2 187 106-306 388-583 (681)
73 3edt_B KLC 2, kinesin light ch 99.7 7.9E-17 2.7E-21 143.8 15.8 228 92-319 15-280 (283)
74 3q15_A PSP28, response regulat 99.7 3.1E-15 1.1E-19 141.2 26.0 244 113-362 102-370 (378)
75 3dra_A Protein farnesyltransfe 99.7 3.6E-15 1.2E-19 136.7 24.2 231 92-334 47-299 (306)
76 1qqe_A Vesicular transport pro 99.7 7.1E-16 2.4E-20 140.7 19.4 202 115-319 40-268 (292)
77 3urz_A Uncharacterized protein 99.7 9.5E-16 3.2E-20 132.7 18.8 168 111-289 3-189 (208)
78 1qqe_A Vesicular transport pro 99.7 1.2E-15 4E-20 139.3 20.1 233 97-354 4-266 (292)
79 2xm6_A Protein corresponding t 99.7 3.9E-14 1.3E-18 138.4 31.6 237 96-358 169-433 (490)
80 4ga2_A E3 SUMO-protein ligase 99.7 1.6E-16 5.6E-21 130.4 11.8 140 162-306 8-149 (150)
81 3edt_B KLC 2, kinesin light ch 99.7 9.1E-16 3.1E-20 136.8 17.7 232 123-357 12-281 (283)
82 1hz4_A MALT regulatory protein 99.7 2E-14 7E-19 134.8 27.4 273 89-361 25-326 (373)
83 3ulq_A Response regulator aspa 99.7 1.1E-15 3.6E-20 144.4 18.6 228 92-320 117-368 (383)
84 2r5s_A Uncharacterized protein 99.7 6.5E-16 2.2E-20 129.9 15.2 170 108-285 2-172 (176)
85 2yhc_A BAMD, UPF0169 lipoprote 99.7 4E-15 1.4E-19 130.3 19.8 189 111-320 3-213 (225)
86 4ga2_A E3 SUMO-protein ligase 99.7 2.1E-16 7.3E-21 129.7 10.7 146 190-343 3-149 (150)
87 3dra_A Protein farnesyltransfe 99.7 3.7E-14 1.3E-18 130.0 25.9 231 116-356 36-286 (306)
88 2xm6_A Protein corresponding t 99.7 2.3E-13 7.7E-18 133.0 32.7 203 96-319 61-287 (490)
89 2yhc_A BAMD, UPF0169 lipoprote 99.7 1.9E-14 6.4E-19 125.9 22.3 182 153-356 6-212 (225)
90 3q15_A PSP28, response regulat 99.6 4.1E-15 1.4E-19 140.3 18.2 228 91-319 114-364 (378)
91 2pzi_A Probable serine/threoni 99.6 3.1E-15 1.1E-19 152.4 18.4 170 92-272 405-583 (681)
92 1hz4_A MALT regulatory protein 99.6 2.8E-13 9.7E-18 126.9 29.5 249 113-361 15-286 (373)
93 3qou_A Protein YBBN; thioredox 99.6 1.3E-14 4.3E-19 132.1 19.6 164 151-319 117-283 (287)
94 3urz_A Uncharacterized protein 99.6 9.2E-15 3.2E-19 126.5 17.0 164 151-320 4-186 (208)
95 2r5s_A Uncharacterized protein 99.6 1.8E-14 6.1E-19 121.1 16.8 165 186-357 8-173 (176)
96 3qou_A Protein YBBN; thioredox 99.6 4E-14 1.4E-18 128.8 20.4 182 168-357 103-284 (287)
97 3dss_A Geranylgeranyl transfer 99.6 1.1E-12 3.8E-17 121.0 29.5 218 94-320 46-304 (331)
98 2vsy_A XCC0866; transferase, g 99.6 7.4E-14 2.5E-18 139.0 21.5 163 126-298 3-169 (568)
99 4gco_A Protein STI-1; structur 99.6 4.1E-14 1.4E-18 112.5 14.8 119 178-301 6-125 (126)
100 2ifu_A Gamma-SNAP; membrane fu 99.6 1.8E-13 6.1E-18 125.6 20.3 223 124-349 3-253 (307)
101 2vsy_A XCC0866; transferase, g 99.6 1.4E-13 4.8E-18 137.0 20.0 157 92-256 3-163 (568)
102 2fo7_A Synthetic consensus TPR 99.6 3.8E-13 1.3E-17 105.6 18.4 130 186-320 3-132 (136)
103 4f3v_A ESX-1 secretion system 99.5 3.9E-14 1.3E-18 127.5 12.8 205 92-302 20-252 (282)
104 3q7a_A Farnesyltransferase alp 99.5 8.4E-13 2.9E-17 122.5 21.7 231 92-334 68-343 (349)
105 2ifu_A Gamma-SNAP; membrane fu 99.5 4E-13 1.4E-17 123.3 18.3 196 114-312 38-253 (307)
106 2fo7_A Synthetic consensus TPR 99.5 1.5E-12 5.1E-17 102.1 18.9 132 153-289 3-135 (136)
107 3dss_A Geranylgeranyl transfer 99.5 2E-11 6.9E-16 112.6 29.2 221 123-356 40-303 (331)
108 4gco_A Protein STI-1; structur 99.5 2.9E-13 9.8E-18 107.6 14.3 118 104-229 5-123 (126)
109 4f3v_A ESX-1 secretion system 99.5 3.1E-13 1.1E-17 121.6 15.2 199 124-335 18-248 (282)
110 3gyz_A Chaperone protein IPGC; 99.5 3.6E-14 1.2E-18 116.7 8.2 101 218-320 33-133 (151)
111 3rjv_A Putative SEL1 repeat pr 99.5 3.6E-12 1.2E-16 110.5 20.7 160 152-319 19-196 (212)
112 1p5q_A FKBP52, FK506-binding p 99.5 1.4E-14 4.9E-19 134.9 5.4 167 125-319 126-293 (336)
113 3gyz_A Chaperone protein IPGC; 99.5 5.1E-13 1.7E-17 109.7 13.8 111 99-214 23-134 (151)
114 2c2l_A CHIP, carboxy terminus 99.5 2.8E-13 9.6E-18 122.8 13.3 196 109-319 1-198 (281)
115 1a17_A Serine/threonine protei 99.5 2.2E-12 7.6E-17 105.7 17.4 130 185-319 14-145 (166)
116 2vgx_A Chaperone SYCD; alterna 99.5 2.6E-13 9E-18 110.9 11.5 119 172-295 8-127 (148)
117 3q7a_A Farnesyltransferase alp 99.5 2.1E-11 7.1E-16 113.1 24.4 239 107-355 49-329 (349)
118 1b89_A Protein (clathrin heavy 99.5 7.8E-14 2.7E-18 132.5 8.2 218 92-355 17-234 (449)
119 2xcb_A PCRH, regulatory protei 99.5 4.9E-13 1.7E-17 108.1 11.6 124 172-300 5-129 (142)
120 3rjv_A Putative SEL1 repeat pr 99.5 1E-11 3.5E-16 107.6 20.7 178 94-288 2-199 (212)
121 1p5q_A FKBP52, FK506-binding p 99.5 7.4E-13 2.5E-17 123.3 14.0 163 96-287 131-295 (336)
122 1hh8_A P67PHOX, NCF-2, neutrop 99.4 1.1E-11 3.7E-16 106.4 20.4 133 154-291 9-155 (213)
123 3e4b_A ALGK; tetratricopeptide 99.4 9.3E-12 3.2E-16 120.5 22.2 43 95-140 55-102 (452)
124 3e4b_A ALGK; tetratricopeptide 99.4 5.9E-11 2E-15 114.9 27.5 222 114-361 178-422 (452)
125 2vgx_A Chaperone SYCD; alterna 99.4 1.6E-12 5.3E-17 106.3 13.6 111 99-214 8-119 (148)
126 2vyi_A SGTA protein; chaperone 99.4 6.2E-12 2.1E-16 98.2 16.5 118 185-307 13-130 (131)
127 2xcb_A PCRH, regulatory protei 99.4 1E-12 3.4E-17 106.3 11.8 111 99-214 5-116 (142)
128 1xi4_A Clathrin heavy chain; a 99.4 3.3E-11 1.1E-15 127.1 25.6 146 109-283 1102-1247(1630)
129 2e2e_A Formate-dependent nitri 99.4 3.6E-12 1.2E-16 106.6 15.2 125 165-294 24-152 (177)
130 2e2e_A Formate-dependent nitri 99.4 2.5E-12 8.5E-17 107.5 14.1 121 195-320 21-144 (177)
131 1a17_A Serine/threonine protei 99.4 1.3E-11 4.5E-16 101.1 17.8 134 150-286 12-146 (166)
132 1xi4_A Clathrin heavy chain; a 99.4 7.7E-11 2.6E-15 124.3 27.4 241 84-342 1110-1415(1630)
133 3upv_A Heat shock protein STI1 99.4 8.5E-12 2.9E-16 98.2 15.8 113 185-302 5-123 (126)
134 1hh8_A P67PHOX, NCF-2, neutrop 99.4 1.3E-11 4.5E-16 105.9 18.4 127 186-320 8-150 (213)
135 2lni_A Stress-induced-phosphop 99.4 4.7E-12 1.6E-16 99.6 14.0 116 185-305 17-132 (133)
136 2qfc_A PLCR protein; TPR, HTH, 99.4 2.7E-11 9.2E-16 110.0 20.9 170 150-319 74-265 (293)
137 3mv2_B Coatomer subunit epsilo 99.4 4.1E-11 1.4E-15 109.1 21.5 184 97-293 85-289 (310)
138 1elw_A TPR1-domain of HOP; HOP 99.4 1.7E-11 5.9E-16 93.9 15.9 112 185-301 5-116 (118)
139 1na0_A Designed protein CTPR3; 99.4 2.9E-11 1E-15 93.5 16.9 117 184-305 9-125 (125)
140 3sz7_A HSC70 cochaperone (SGT) 99.4 1.6E-11 5.4E-16 101.5 15.9 111 184-299 11-121 (164)
141 3upv_A Heat shock protein STI1 99.4 1.8E-11 6.3E-16 96.2 14.6 118 219-338 2-122 (126)
142 2c2l_A CHIP, carboxy terminus 99.4 1E-11 3.5E-16 112.5 14.7 191 150-356 3-198 (281)
143 2lni_A Stress-induced-phosphop 99.3 3.1E-11 1.1E-15 94.8 15.2 121 218-343 13-133 (133)
144 2vyi_A SGTA protein; chaperone 99.3 2.5E-11 8.4E-16 94.8 14.4 120 109-236 9-129 (131)
145 2qfc_A PLCR protein; TPR, HTH, 99.3 1.1E-10 3.6E-15 106.1 20.6 175 186-363 77-272 (293)
146 2fbn_A 70 kDa peptidylprolyl i 99.3 4E-12 1.4E-16 108.5 10.4 96 222-319 89-185 (198)
147 1b89_A Protein (clathrin heavy 99.3 2.9E-13 1E-17 128.6 3.1 239 84-351 37-305 (449)
148 3u3w_A Transcriptional activat 99.3 1.2E-10 4E-15 105.8 20.3 164 156-319 80-265 (293)
149 2fbn_A 70 kDa peptidylprolyl i 99.3 2.8E-11 9.5E-16 103.2 14.4 119 151-274 38-173 (198)
150 4gcn_A Protein STI-1; structur 99.3 4.4E-11 1.5E-15 94.8 14.3 101 186-289 10-115 (127)
151 3q49_B STIP1 homology and U bo 99.3 4.4E-11 1.5E-15 95.0 14.2 100 218-319 6-105 (137)
152 3sz7_A HSC70 cochaperone (SGT) 99.3 6E-11 2.1E-15 97.9 15.5 116 149-267 9-125 (164)
153 1hxi_A PEX5, peroxisome target 99.3 2.1E-11 7.3E-16 95.9 12.0 97 188-289 21-117 (121)
154 1na0_A Designed protein CTPR3; 99.3 1.6E-10 5.6E-15 89.2 16.9 113 112-232 9-122 (125)
155 3u3w_A Transcriptional activat 99.3 1.8E-10 6.2E-15 104.5 19.3 170 191-363 82-272 (293)
156 1elw_A TPR1-domain of HOP; HOP 99.3 1.7E-10 5.8E-15 88.3 16.3 114 220-338 3-116 (118)
157 2dba_A Smooth muscle cell asso 99.3 8.4E-11 2.9E-15 94.2 14.8 110 186-300 30-142 (148)
158 2xev_A YBGF; tetratricopeptide 99.3 1.7E-10 5.7E-15 90.6 16.1 113 187-302 5-121 (129)
159 3q49_B STIP1 homology and U bo 99.3 5.8E-11 2E-15 94.3 13.4 117 183-304 8-129 (137)
160 3rkv_A Putative peptidylprolyl 99.3 6.3E-11 2.2E-15 97.6 13.6 113 186-303 13-144 (162)
161 2dba_A Smooth muscle cell asso 99.3 1.7E-10 5.7E-15 92.4 15.6 121 218-341 25-146 (148)
162 1dce_A Protein (RAB geranylger 99.3 8.2E-11 2.8E-15 117.0 16.6 172 93-274 44-243 (567)
163 3gw4_A Uncharacterized protein 99.3 1.1E-10 3.9E-15 98.8 15.0 156 163-319 4-175 (203)
164 3gw4_A Uncharacterized protein 99.3 2.3E-10 7.7E-15 97.0 16.6 167 123-294 3-184 (203)
165 1dce_A Protein (RAB geranylger 99.2 5.3E-10 1.8E-14 111.1 21.0 172 128-309 45-244 (567)
166 1kt0_A FKBP51, 51 kDa FK506-bi 99.2 1.1E-11 3.8E-16 120.2 8.6 149 166-319 249-414 (457)
167 1wao_1 Serine/threonine protei 99.2 3.3E-11 1.1E-15 117.5 11.9 171 187-362 9-202 (477)
168 1elr_A TPR2A-domain of HOP; HO 99.2 1.3E-10 4.4E-15 90.7 13.1 115 185-303 5-124 (131)
169 4gcn_A Protein STI-1; structur 99.2 1.2E-10 4.1E-15 92.3 12.8 100 219-320 6-112 (127)
170 4h7y_A Dual specificity protei 99.2 1.6E-10 5.6E-15 91.9 13.3 115 218-336 10-136 (161)
171 1kt0_A FKBP51, 51 kDa FK506-bi 99.2 2.4E-10 8.1E-15 110.8 16.3 152 124-285 246-414 (457)
172 2kck_A TPR repeat; tetratricop 99.2 1.3E-10 4.4E-15 88.2 11.5 101 218-320 3-106 (112)
173 1hxi_A PEX5, peroxisome target 99.2 1.2E-10 4.2E-15 91.4 11.7 97 222-320 18-114 (121)
174 3mv2_B Coatomer subunit epsilo 99.2 3.7E-09 1.3E-13 96.3 22.1 177 131-320 85-282 (310)
175 4h7y_A Dual specificity protei 99.2 3.9E-10 1.3E-14 89.8 13.0 115 106-254 7-127 (161)
176 4b4t_Q 26S proteasome regulato 99.2 2.3E-09 8E-14 101.9 20.9 206 114-319 6-244 (434)
177 1ihg_A Cyclophilin 40; ppiase 99.2 4.2E-10 1.4E-14 106.0 15.3 122 186-312 225-362 (370)
178 2kck_A TPR repeat; tetratricop 99.2 2E-10 6.8E-15 87.1 10.5 103 185-290 7-110 (112)
179 3rkv_A Putative peptidylprolyl 99.2 6.2E-10 2.1E-14 91.5 14.1 117 220-339 10-143 (162)
180 2if4_A ATFKBP42; FKBP-like, al 99.2 6.5E-11 2.2E-15 110.2 9.0 95 223-319 232-327 (338)
181 2xev_A YBGF; tetratricopeptide 99.2 8.2E-10 2.8E-14 86.6 13.9 115 222-339 3-121 (129)
182 2hr2_A Hypothetical protein; a 99.1 4.2E-10 1.5E-14 92.2 12.4 105 186-295 13-140 (159)
183 4b4t_Q 26S proteasome regulato 99.1 2.6E-09 8.7E-14 101.6 19.8 204 81-284 7-243 (434)
184 3ro3_A PINS homolog, G-protein 99.1 5.7E-10 1.9E-14 90.1 13.0 134 186-319 11-157 (164)
185 1elr_A TPR2A-domain of HOP; HO 99.1 5E-10 1.7E-14 87.3 12.3 100 151-253 4-111 (131)
186 3k9i_A BH0479 protein; putativ 99.1 1.2E-10 4.2E-15 90.5 8.2 93 197-294 3-98 (117)
187 2if4_A ATFKBP42; FKBP-like, al 99.1 9.8E-11 3.4E-15 108.9 8.6 135 151-290 179-332 (338)
188 3ro3_A PINS homolog, G-protein 99.1 9.7E-10 3.3E-14 88.7 13.6 137 152-288 10-160 (164)
189 2hr2_A Hypothetical protein; a 99.1 9E-10 3.1E-14 90.2 12.7 101 220-320 10-131 (159)
190 1wao_1 Serine/threonine protei 99.1 5.6E-11 1.9E-15 115.9 4.4 133 113-253 7-153 (477)
191 4g26_A Pentatricopeptide repea 99.1 1.4E-08 4.9E-13 99.3 21.6 161 154-319 29-203 (501)
192 4g26_A Pentatricopeptide repea 99.0 3.8E-08 1.3E-12 96.3 22.3 168 185-357 27-204 (501)
193 3k9i_A BH0479 protein; putativ 99.0 7.5E-10 2.6E-14 86.0 8.0 91 164-257 3-97 (117)
194 1zu2_A Mitochondrial import re 99.0 2.3E-09 7.8E-14 87.7 9.9 94 196-294 14-128 (158)
195 1ihg_A Cyclophilin 40; ppiase 99.0 1.1E-08 3.7E-13 96.3 16.1 138 112-277 223-361 (370)
196 1zu2_A Mitochondrial import re 98.9 2.8E-09 9.6E-14 87.1 9.0 86 166-254 17-124 (158)
197 2kat_A Uncharacterized protein 98.9 1.3E-08 4.3E-13 78.4 10.5 80 170-252 4-84 (115)
198 1na3_A Designed protein CTPR2; 98.9 2.1E-08 7.1E-13 73.2 11.1 86 218-305 6-91 (91)
199 2kat_A Uncharacterized protein 98.9 1.8E-08 6E-13 77.6 11.1 82 96-182 3-84 (115)
200 3u64_A Protein TP_0956; tetrat 98.9 4.2E-07 1.5E-11 81.1 20.8 204 89-320 43-269 (301)
201 2l6j_A TPR repeat-containing p 98.9 2.1E-09 7.1E-14 81.7 5.0 93 221-315 4-102 (111)
202 2l6j_A TPR repeat-containing p 98.8 2.7E-09 9.3E-14 81.1 5.5 98 183-283 3-104 (111)
203 3u64_A Protein TP_0956; tetrat 98.8 8.7E-08 3E-12 85.5 13.4 174 92-290 60-273 (301)
204 1na3_A Designed protein CTPR2; 98.7 2.5E-07 8.6E-12 67.2 12.0 81 185-270 10-90 (91)
205 3ma5_A Tetratricopeptide repea 98.7 7.1E-08 2.4E-12 72.6 8.4 69 218-288 4-72 (100)
206 2kc7_A BFR218_protein; tetratr 98.7 5.3E-08 1.8E-12 72.5 7.6 89 189-290 5-94 (99)
207 3ma5_A Tetratricopeptide repea 98.7 1.5E-07 5E-12 70.8 9.7 71 107-182 2-72 (100)
208 3n71_A Histone lysine methyltr 98.6 1.9E-07 6.3E-12 91.0 12.3 128 192-319 317-463 (490)
209 2kc7_A BFR218_protein; tetratr 98.5 2.7E-07 9.4E-12 68.6 8.1 85 225-319 4-89 (99)
210 3n71_A Histone lysine methyltr 98.5 1E-06 3.4E-11 85.8 13.7 134 161-294 319-472 (490)
211 1klx_A Cysteine rich protein B 98.5 3.8E-06 1.3E-10 67.1 14.0 107 167-285 11-125 (138)
212 3ly7_A Transcriptional activat 98.4 1.2E-05 3.9E-10 74.6 17.5 158 97-290 179-343 (372)
213 3bee_A Putative YFRE protein; 98.4 1.5E-06 5.3E-11 64.5 9.4 70 218-289 3-75 (93)
214 1klx_A Cysteine rich protein B 98.4 5.4E-06 1.9E-10 66.2 12.6 110 198-320 9-126 (138)
215 3ly7_A Transcriptional activat 98.3 9.8E-06 3.3E-10 75.1 13.3 28 96-123 217-244 (372)
216 3bee_A Putative YFRE protein; 98.1 3.9E-05 1.3E-09 56.8 11.5 75 182-259 4-81 (93)
217 2v5f_A Prolyl 4-hydroxylase su 98.1 3.5E-05 1.2E-09 58.1 11.3 79 220-298 4-87 (104)
218 1pc2_A Mitochondria fission pr 98.1 4.6E-05 1.6E-09 61.4 11.9 93 200-296 14-110 (152)
219 3qww_A SET and MYND domain-con 97.9 5E-05 1.7E-09 72.6 9.9 87 164-250 311-411 (433)
220 3qww_A SET and MYND domain-con 97.8 9.2E-05 3.1E-09 70.8 11.3 91 196-286 310-411 (433)
221 3qwp_A SET and MYND domain-con 97.8 0.00018 6.2E-09 68.7 12.7 87 164-250 300-400 (429)
222 1pc2_A Mitochondria fission pr 97.8 0.00033 1.1E-08 56.4 11.8 93 167-261 14-111 (152)
223 2v5f_A Prolyl 4-hydroxylase su 97.7 0.0005 1.7E-08 51.6 11.9 73 184-256 5-81 (104)
224 3qwp_A SET and MYND domain-con 97.7 0.00036 1.2E-08 66.6 12.6 90 230-319 296-399 (429)
225 3txn_A 26S proteasome regulato 97.5 0.019 6.3E-07 53.8 21.5 174 116-289 23-213 (394)
226 1nzn_A CGI-135 protein, fissio 97.5 0.0029 9.8E-08 49.1 12.8 94 200-297 17-114 (126)
227 3esl_A Checkpoint serine/threo 97.3 0.035 1.2E-06 46.5 18.0 137 127-268 7-161 (202)
228 3ffl_A Anaphase-promoting comp 97.3 0.0025 8.5E-08 51.8 10.7 27 257-283 122-148 (167)
229 4a1g_A Mitotic checkpoint seri 97.3 0.009 3.1E-07 47.9 13.6 129 201-339 7-147 (152)
230 3spa_A Mtrpol, DNA-directed RN 97.2 0.0033 1.1E-07 65.2 13.7 97 152-250 128-230 (1134)
231 3esl_A Checkpoint serine/threo 97.2 0.0083 2.8E-07 50.3 13.3 138 199-340 7-162 (202)
232 3spa_A Mtrpol, DNA-directed RN 97.1 0.0057 1.9E-07 63.5 14.0 102 184-286 127-230 (1134)
233 4a1g_A Mitotic checkpoint seri 97.1 0.012 4.2E-07 47.1 12.9 111 129-250 7-130 (152)
234 2wvi_A Mitotic checkpoint seri 97.1 0.012 3.9E-07 47.9 12.6 127 206-341 5-144 (164)
235 1nzn_A CGI-135 protein, fissio 96.9 0.012 4.1E-07 45.6 10.9 96 166-263 16-116 (126)
236 3txn_A 26S proteasome regulato 96.9 0.029 1E-06 52.5 15.4 167 150-319 18-209 (394)
237 4aez_C MAD3, mitotic spindle c 96.9 0.021 7E-07 48.7 13.0 136 96-251 30-180 (223)
238 4aez_C MAD3, mitotic spindle c 96.8 0.02 7E-07 48.8 12.2 134 199-340 50-197 (223)
239 2wvi_A Mitotic checkpoint seri 96.8 0.034 1.2E-06 45.2 13.0 112 149-268 17-142 (164)
240 3o48_A Mitochondria fission 1 96.3 0.093 3.2E-06 40.8 12.1 77 182-261 38-118 (134)
241 1y8m_A FIS1; mitochondria, unk 96.1 0.13 4.3E-06 40.6 12.1 74 182-258 37-114 (144)
242 3ffl_A Anaphase-promoting comp 96.1 0.066 2.3E-06 43.4 10.8 117 188-318 24-149 (167)
243 3o48_A Mitochondria fission 1 96.1 0.11 3.8E-06 40.4 11.6 79 218-297 37-118 (134)
244 4gns_B Protein CSD3, chitin bi 95.8 0.13 4.3E-06 52.2 14.2 59 223-283 339-397 (754)
245 3mkq_A Coatomer beta'-subunit; 95.8 0.32 1.1E-05 49.3 17.5 75 155-247 633-707 (814)
246 4gns_B Protein CSD3, chitin bi 95.8 0.14 4.7E-06 51.9 14.2 129 112-247 248-397 (754)
247 3mkq_A Coatomer beta'-subunit; 95.8 0.61 2.1E-05 47.2 19.3 75 116-210 633-707 (814)
248 1y8m_A FIS1; mitochondria, unk 95.7 0.45 1.5E-05 37.5 13.9 78 218-296 36-116 (144)
249 2ff4_A Probable regulatory pro 95.2 0.34 1.2E-05 45.2 14.0 106 196-319 127-233 (388)
250 4b4t_P 26S proteasome regulato 95.2 2.3 7.7E-05 40.3 20.0 193 125-319 29-246 (445)
251 4b4t_R RPN7, 26S proteasome re 94.7 0.15 5E-06 48.4 10.1 103 186-288 133-239 (429)
252 4b4t_P 26S proteasome regulato 94.0 2.3 7.8E-05 40.3 16.7 175 113-289 138-327 (445)
253 3mkq_B Coatomer subunit alpha; 93.7 2.5 8.4E-05 34.6 16.2 125 195-353 16-140 (177)
254 2ff4_A Probable regulatory pro 93.6 1.1 3.7E-05 41.7 13.4 18 164-181 128-145 (388)
255 4b4t_R RPN7, 26S proteasome re 93.4 1.1 3.8E-05 42.3 13.1 101 112-214 131-238 (429)
256 1qsa_A Protein (soluble lytic 93.3 4.9 0.00017 39.8 18.0 189 123-317 225-439 (618)
257 4b4t_S RPN3, 26S proteasome re 92.8 4.3 0.00015 39.1 16.2 169 183-362 180-375 (523)
258 4b4t_S RPN3, 26S proteasome re 92.3 2.8 9.6E-05 40.3 14.2 141 112-254 136-303 (523)
259 3mkq_B Coatomer subunit alpha; 91.8 4.5 0.00016 33.0 15.8 102 120-246 13-114 (177)
260 1zbp_A Hypothetical protein VP 90.6 3.1 0.00011 36.4 11.4 56 195-253 8-63 (273)
261 1zbp_A Hypothetical protein VP 88.1 13 0.00044 32.5 14.7 120 230-358 6-130 (273)
262 4fhn_B Nucleoporin NUP120; pro 85.9 27 0.00093 37.2 17.5 115 156-273 847-987 (1139)
263 4fhn_B Nucleoporin NUP120; pro 85.2 34 0.0012 36.4 17.8 143 190-343 818-986 (1139)
264 1ya0_A SMG-7 transcript varian 85.1 4.3 0.00015 39.0 9.8 73 224-298 155-227 (497)
265 1wy6_A Hypothetical protein ST 83.8 14 0.00047 28.9 14.4 57 191-250 98-154 (172)
266 1ya0_A SMG-7 transcript varian 79.0 14 0.00048 35.4 10.8 78 114-196 154-232 (497)
267 2wpv_A GET4, UPF0363 protein Y 70.4 59 0.002 28.9 18.3 20 339-358 199-218 (312)
268 3ax2_A Mitochondrial import re 66.4 15 0.00051 25.1 5.5 35 262-296 22-56 (73)
269 2ijq_A Hypothetical protein; s 58.6 57 0.002 25.9 8.5 56 264-319 39-103 (161)
270 3kae_A CDC27, possible protein 58.3 74 0.0025 25.9 18.5 62 152-214 64-144 (242)
271 3ax2_A Mitochondrial import re 57.3 40 0.0014 22.9 6.4 27 117-143 22-48 (73)
272 3t5v_B Nuclear mRNA export pro 55.6 1.4E+02 0.0047 28.1 12.8 65 226-290 181-254 (455)
273 2ijq_A Hypothetical protein; s 54.6 58 0.002 25.9 7.9 58 227-284 38-102 (161)
274 2bn5_A PSI; nuclear protein, s 53.5 19 0.00064 20.2 3.3 23 332-354 6-28 (33)
275 1om2_A Protein (mitochondrial 49.6 22 0.00075 25.6 4.2 32 262-293 25-56 (95)
276 2w2u_A Hypothetical P60 katani 47.8 42 0.0014 23.4 5.5 20 195-214 30-49 (83)
277 1om2_A Protein (mitochondrial 47.4 39 0.0013 24.3 5.3 28 116-143 24-51 (95)
278 2v6y_A AAA family ATPase, P60 46.8 44 0.0015 23.2 5.5 20 195-214 22-41 (83)
279 3lvg_A Clathrin heavy chain 1; 46.1 0.048 1.6E-06 52.1 -13.1 221 109-348 51-324 (624)
280 4gq2_M Nucleoporin NUP120; bet 45.5 2.4E+02 0.0081 29.3 13.1 108 227-341 816-949 (950)
281 1wy6_A Hypothetical protein ST 44.2 1.1E+02 0.0039 23.9 14.5 80 235-320 75-154 (172)
282 4ady_A RPN2, 26S proteasome re 43.6 3E+02 0.01 28.6 13.4 21 192-212 568-588 (963)
283 3kae_A CDC27, possible protein 40.7 1.5E+02 0.005 24.1 16.0 117 163-290 14-147 (242)
284 2w2u_A Hypothetical P60 katani 40.7 49 0.0017 23.0 4.9 32 200-249 16-47 (83)
285 2v6y_A AAA family ATPase, P60 39.3 53 0.0018 22.8 4.9 31 201-249 9-39 (83)
286 4gq2_M Nucleoporin NUP120; bet 37.9 2E+02 0.007 29.7 11.2 79 155-235 844-950 (950)
287 3bqo_A Telomeric repeat-bindin 36.7 1.2E+02 0.0043 24.9 7.3 50 262-311 122-171 (211)
288 4b4t_O 26S proteasome regulato 35.5 2.6E+02 0.0088 25.5 10.6 65 221-285 127-197 (393)
289 1qsa_A Protein (soluble lytic 35.3 3.3E+02 0.011 26.6 28.4 191 84-285 124-347 (618)
290 4b4t_O 26S proteasome regulato 34.6 2.6E+02 0.0091 25.4 11.4 83 203-285 58-155 (393)
291 1wfd_A Hypothetical protein 15 34.5 84 0.0029 22.2 5.5 20 195-214 26-45 (93)
292 1g1e_B SIN3A; four-helix bundl 33.9 1E+02 0.0035 21.7 5.7 31 200-233 10-40 (89)
293 3t5x_A PCI domain-containing p 33.7 81 0.0028 25.9 6.0 52 222-273 15-69 (203)
294 2cpt_A SKD1 protein, vacuolar 30.6 98 0.0033 23.0 5.4 20 195-214 29-48 (117)
295 3lpz_A GET4 (YOR164C homolog); 30.5 3E+02 0.01 24.7 18.8 204 122-341 6-217 (336)
296 2wpv_A GET4, UPF0363 protein Y 29.8 2.9E+02 0.0099 24.4 20.3 28 218-245 131-158 (312)
297 2d2s_A Exocyst complex compone 28.3 2.1E+02 0.0071 24.1 7.8 27 257-283 91-117 (235)
298 2qx5_A Nucleoporin NIC96; mRNA 27.6 4.1E+02 0.014 26.3 10.8 176 113-319 257-484 (661)
299 2cqq_A RSGI RUH-037, DNAJ homo 27.4 1.4E+02 0.0048 20.0 5.6 41 277-319 16-57 (72)
300 1xkp_A Putative membrane-bound 26.1 3E+02 0.01 23.3 12.6 49 198-250 162-210 (246)
301 2vj4_A Protein MXIC, MXIC; sec 25.4 3.1E+02 0.011 24.0 8.5 152 205-361 45-204 (294)
302 2crb_A Nuclear receptor bindin 24.4 1.2E+02 0.004 21.7 4.4 27 186-212 17-43 (97)
303 4ady_A RPN2, 26S proteasome re 24.2 6.2E+02 0.021 26.3 18.8 44 261-306 234-277 (963)
304 2rpa_A Katanin P60 ATPase-cont 22.0 75 0.0026 21.8 3.1 25 261-285 16-40 (78)
305 3re2_A Predicted protein; meni 21.6 2.8E+02 0.0094 25.3 7.4 65 219-283 253-322 (472)
306 4a5x_A MITD1, MIT domain-conta 20.2 94 0.0032 21.7 3.4 17 268-284 27-43 (86)
No 1
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.97 E-value=3.9e-28 Score=223.95 Aligned_cols=243 Identities=18% Similarity=0.278 Sum_probs=216.3
Q ss_pred CCCHHHHHHHHHHHHcc----cCH----HHHHHHHHHHHhhccCccccchHHHHHHHHHHHHH-------hCCH------
Q psy17788 109 PNNSELWVKYMAYHLQA----TEI----EKARSIARRALTVINIRNEEDRLNVWTSLLNLEHL-------YGTK------ 167 (365)
Q Consensus 109 p~~~~~w~~~~~~~~~~----~~~----e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~-------~g~~------ 167 (365)
|.+..+|..|+.+..+. ++. ++|+.+|++|+...| .+..+|+.++.++.. .|+.
T Consensus 5 ~~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p-----~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~ 79 (308)
T 2ond_A 5 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-----HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLF 79 (308)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHhchhhhhccchhhcccc
Confidence 45678999999998775 344 789999999999999 779999999998764 4775
Q ss_pred -HHHHHHHHHHHH-cCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHcCChHHHHHH
Q psy17788 168 -ESLQECLHEAVR-CNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVN-IYLQCATLLLRLGQKDTARHI 243 (365)
Q Consensus 168 -~~a~~v~~ral~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~a~~~~~~g~~~~A~~~ 243 (365)
+.|+.+|++|+. .+|. ..+|..++.++...|++++|+.+|+++++.. |.++. +|..++.++.+.|++++|+.+
T Consensus 80 ~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~~~~~A~~~ 156 (308)
T 2ond_A 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE---DIDPTLVYIQYMKFARRAEGIKSGRMI 156 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS---SSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc---ccCccHHHHHHHHHHHHhcCHHHHHHH
Confidence 899999999999 5774 4699999999999999999999999999987 87876 999999999999999999999
Q ss_pred HHHHHhcCCCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC-
Q psy17788 244 LQRGLNNLPPAVHVTLITRFALAENK-FGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQK- 321 (365)
Q Consensus 244 l~ral~~~p~~~~~~~~~~~a~~~~~-~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~- 321 (365)
|+++++..|.. ..++...+.++.. .|+++.|+.+|++++..+|+++.+|..|++++...|++++|+.+|++++...
T Consensus 157 ~~~a~~~~p~~--~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~ 234 (308)
T 2ond_A 157 FKKAREDARTR--HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHHTSTTCC--THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHhcCCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccC
Confidence 99999998876 4456677777665 6999999999999999999999999999999999999999999999999842
Q ss_pred CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhh
Q psy17788 322 LPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNS 361 (365)
Q Consensus 322 l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~ 361 (365)
++|.....+|..|+.|+..+|+.+.+..++.+|++..+..
T Consensus 235 l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccc
Confidence 4555688999999999999999999999999999988764
No 2
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.95 E-value=2e-26 Score=232.98 Aligned_cols=243 Identities=13% Similarity=0.221 Sum_probs=211.4
Q ss_pred HHHHHHHHHHHHccc-------CHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHcCCC
Q psy17788 112 SELWVKYMAYHLQAT-------EIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ-ECLHEAVRCNDE 183 (365)
Q Consensus 112 ~~~w~~~~~~~~~~~-------~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~-~v~~ral~~~~~ 183 (365)
..+|..|+.+....+ ..+..+.+|++||..+| ....+|+.|+.++...|+.+.|+ .+|++|+..+|.
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p-----~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~ 376 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVC-----FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPN 376 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-----TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCC
Confidence 489999999997654 24556789999999999 67899999999999999998996 999999999985
Q ss_pred -HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc--------CCC-----------CcHHHHHHHHHHHHHcCChHHHHHH
Q psy17788 184 -TKVYMNMMEIYAASAQIRDLESTVKLLLKKAG--------QTH-----------SSVNIYLQCATLLLRLGQKDTARHI 243 (365)
Q Consensus 184 -~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~--------~~~-----------~~~~~~~~~a~~~~~~g~~~~A~~~ 243 (365)
..+|+.++.++...|++++|+++|++++.... ..| ....+|+.++.++.+.|+.+.|+.+
T Consensus 377 s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~v 456 (679)
T 4e6h_A 377 SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKI 456 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 45789999999999999999999999998630 002 2456999999999999999999999
Q ss_pred HHHHHhcCCCcchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q psy17788 244 LQRGLNNLPPAVHVTLITRFALAENKFGD-ASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKL 322 (365)
Q Consensus 244 l~ral~~~p~~~~~~~~~~~a~~~~~~g~-~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l 322 (365)
|.+|++..|.. ...+|..+|.++++.|. +++|+.+|+++++.+|+++.+|..|++++...|+.++||.+|+||+....
T Consensus 457 f~~A~~~~~~~-~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 457 FGKCRRLKKLV-TPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHTGGGS-CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred HHHHHHhcCCC-ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 99999873332 23467788999998765 99999999999999999999999999999999999999999999998422
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q psy17788 323 PPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRN 360 (365)
Q Consensus 323 ~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~ 360 (365)
++.....+|..|+.||..+|+.+.+..|.+|+.+.+++
T Consensus 536 ~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 536 DSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp STTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 23468899999999999999999999999999998875
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=8.8e-25 Score=206.85 Aligned_cols=254 Identities=12% Similarity=0.084 Sum_probs=217.5
Q ss_pred CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788 92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ 171 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~ 171 (365)
++..+|+..|++++..+|++..+|..++.++...|++++|..+|++++...| +...+|..++.++...|+++.|.
T Consensus 115 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~g~~~~A~ 189 (388)
T 1w3b_A 115 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP-----NFAVAWSNLGCVFNAQGEIWLAI 189 (388)
T ss_dssp SCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHTTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCHHHHH
Confidence 6667888888888888888888888888888888888888888888888777 66788888888888888888888
Q ss_pred HHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy17788 172 ECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNN 250 (365)
Q Consensus 172 ~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~ 250 (365)
..|++++..+|. ..+|..++.++...|++++|...|++++... |.++.+|..++.++...|++++|...|++++..
T Consensus 190 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 266 (388)
T 1w3b_A 190 HHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS---PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 899988888875 4678888888888899999999999998887 888899999999999999999999999999988
Q ss_pred CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHH
Q psy17788 251 LPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPL 330 (365)
Q Consensus 251 ~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~ 330 (365)
.|.. ..++..+|.++.+.|++++|...|++++..+|.+..+|..++.++...|++++|..+|++++.. . +.....
T Consensus 267 ~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~-p~~~~~ 341 (388)
T 1w3b_A 267 QPHF--PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--F-PEFAAA 341 (388)
T ss_dssp CSSC--HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--C-TTCHHH
T ss_pred CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C-CCcHHH
Confidence 8885 4567788888899999999999999999999999999999999999999999999999999873 2 346677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy17788 331 YMKWLKLEEQYGDAEAVENVKKEIEQYV 358 (365)
Q Consensus 331 ~~~~l~~e~~~G~~~~a~~v~~kA~~~v 358 (365)
|...+......|+.+.|...+++|++.-
T Consensus 342 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 369 (388)
T 1w3b_A 342 HSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 8888888888899999999998888643
No 4
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.94 E-value=4.6e-25 Score=218.30 Aligned_cols=239 Identities=18% Similarity=0.280 Sum_probs=210.0
Q ss_pred HHHHHHHHHHHHcc----cCH----HHHHHHHHHHHhhccCccccchHHHHHHHHHHHHH-------hCCHH-------H
Q psy17788 112 SELWVKYMAYHLQA----TEI----EKARSIARRALTVINIRNEEDRLNVWTSLLNLEHL-------YGTKE-------S 169 (365)
Q Consensus 112 ~~~w~~~~~~~~~~----~~~----e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~-------~g~~~-------~ 169 (365)
..+|..|+.+.... ++. ..|..+|++||...| .+..+|+.|+.++.. .|+.+ .
T Consensus 230 ~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p-----~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~ 304 (530)
T 2ooe_A 230 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-----HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDE 304 (530)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHH
Confidence 47999999888653 233 478889999999999 678999999999876 68876 8
Q ss_pred HHHHHHHHHH-cCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcH-HHHHHHHHHHHHcCChHHHHHHHHH
Q psy17788 170 LQECLHEAVR-CND-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSV-NIYLQCATLLLRLGQKDTARHILQR 246 (365)
Q Consensus 170 a~~v~~ral~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~a~~~~~~g~~~~A~~~l~r 246 (365)
|+.+|++|+. .+| +..+|..++.++.+.|++++|+.+|+++++.. |.++ .+|+.++.++.+.|++++|+.+|++
T Consensus 305 A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 381 (530)
T 2ooe_A 305 AANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE---DIDPTLVYIQYMKFARRAEGIKSGRMIFKK 381 (530)
T ss_dssp HHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS---SSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc---ccCchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999999997 677 46899999999999999999999999999986 7775 6999999999999999999999999
Q ss_pred HHhcCCCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCC
Q psy17788 247 GLNNLPPAVHVTLITRFALAEN-KFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQK-LPP 324 (365)
Q Consensus 247 al~~~p~~~~~~~~~~~a~~~~-~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~-l~~ 324 (365)
|++..|...+ ++...+.+++ ..|++++|+.+|+++++.+|+++.+|..|++++.+.|++++|+.+|++++... ++|
T Consensus 382 Al~~~~~~~~--~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~ 459 (530)
T 2ooe_A 382 AREDARTRHH--VYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 459 (530)
T ss_dssp HHTCTTCCTH--HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCG
T ss_pred HHhccCCchH--HHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCH
Confidence 9998887544 4455565543 58999999999999999999999999999999999999999999999999842 233
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q psy17788 325 KKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRN 360 (365)
Q Consensus 325 ~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~ 360 (365)
.....+|..|+.||..+|+.+++..++.++++.++.
T Consensus 460 ~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 460 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp GGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 457789999999999999999999999999999985
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=3.9e-25 Score=209.27 Aligned_cols=253 Identities=15% Similarity=0.121 Sum_probs=219.6
Q ss_pred CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788 92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ 171 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~ 171 (365)
++..+|+..|++++..+|++..+|..++..+...|++++|...|++++...| +...+|..++.++...|+++.|.
T Consensus 81 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~g~~~~A~ 155 (388)
T 1w3b_A 81 GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-----DLYCVRSDLGNLLKALGRLEEAK 155 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-----TCTHHHHHHHHHHHTTSCHHHHH
T ss_pred CCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHccCHHHHH
Confidence 5666888888888888888888888888888888899999999998888877 66788888888888889999999
Q ss_pred HHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy17788 172 ECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNN 250 (365)
Q Consensus 172 ~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~ 250 (365)
.+|++++...|. ..+|..++.++...|++++|+..|+++++.. |.++.+|..++.++...|++++|...|.+++..
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 232 (388)
T 1w3b_A 156 ACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD---PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999888875 4678888999999999999999999999887 888999999999999999999999999999988
Q ss_pred CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHH
Q psy17788 251 LPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPL 330 (365)
Q Consensus 251 ~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~ 330 (365)
.|.. ..++..+|.++...|++++|...|++++...|+++++|..++.++...|++++|..+|++++.. .+.....
T Consensus 233 ~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~ 307 (388)
T 1w3b_A 233 SPNH--AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL---CPTHADS 307 (388)
T ss_dssp CTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH---CTTCHHH
T ss_pred CcCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CcccHHH
Confidence 8885 5577788999999999999999999999999999999999999999999999999999999974 2346678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy17788 331 YMKWLKLEEQYGDAEAVENVKKEIEQY 357 (365)
Q Consensus 331 ~~~~l~~e~~~G~~~~a~~v~~kA~~~ 357 (365)
|...+......|+.+.|...++++++.
T Consensus 308 ~~~l~~~~~~~g~~~~A~~~~~~al~~ 334 (388)
T 1w3b_A 308 LNNLANIKREQGNIEEAVRLYRKALEV 334 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 888888888899999999999888764
No 6
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.94 E-value=2.1e-25 Score=209.26 Aligned_cols=261 Identities=11% Similarity=0.040 Sum_probs=228.1
Q ss_pred CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788 92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ 171 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~ 171 (365)
++..+|+..|++++..+|++..+|..++.++...|++++|+.+|++++...| ....+|..++.++...|+++.|.
T Consensus 79 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~g~~~~A~ 153 (365)
T 4eqf_A 79 GDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-----NNLKALMALAVSYTNTSHQQDAC 153 (365)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHccccHHHHH
Confidence 7777899999999999999999999999999999999999999999999888 66899999999999999999999
Q ss_pred HHHHHHHHcCCCHH-H----------HHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCC--cHHHHHHHHHHHHHcCChH
Q psy17788 172 ECLHEAVRCNDETK-V----------YMNMMEIYAASAQIRDLESTVKLLLKKAGQTHS--SVNIYLQCATLLLRLGQKD 238 (365)
Q Consensus 172 ~v~~ral~~~~~~~-~----------~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~a~~~~~~g~~~ 238 (365)
.+|++++...|... + +..++.++...|++++|+.+|++++... |. ++.+|..+|.++...|+++
T Consensus 154 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~l~~~~~~~g~~~ 230 (365)
T 4eqf_A 154 EALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN---GDMIDPDLQTGLGVLFHLSGEFN 230 (365)
T ss_dssp HHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS---CSSCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC---cCccCHHHHHHHHHHHHHCCCHH
Confidence 99999999887532 2 2345889999999999999999999998 87 8999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy17788 239 TARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAV 318 (365)
Q Consensus 239 ~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral 318 (365)
+|..+|++++...|.. ..++..+|.++...|++++|+..|++++..+|++..+|..++.++...|++++|+.+|++++
T Consensus 231 ~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 308 (365)
T 4eqf_A 231 RAIDAFNAALTVRPED--YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTAL 308 (365)
T ss_dssp HHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999999999985 66788899999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCC---------CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhh
Q psy17788 319 TQKLPP---------KKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNSK 362 (365)
Q Consensus 319 ~~~l~~---------~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~~ 362 (365)
...... .....+|..........|..+.+..+..++++.+...+
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~~~~~~~ 361 (365)
T 4eqf_A 309 SLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVLLRAF 361 (365)
T ss_dssp HHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCGGGTTTT
T ss_pred HhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHHHHHHhc
Confidence 842110 11357899999999999999999999888776665543
No 7
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.94 E-value=2e-24 Score=198.40 Aligned_cols=258 Identities=8% Similarity=0.012 Sum_probs=222.7
Q ss_pred HhcCCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhC-CH
Q psy17788 89 LLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYG-TK 167 (365)
Q Consensus 89 l~~~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g-~~ 167 (365)
+..++..+|+..|++++..+|.+..++..++.++...|++++|..++++++...| ....+|..++.++...| .+
T Consensus 33 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~ 107 (330)
T 3hym_B 33 YYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-----SNPVSWFAVGCYYLMVGHKN 107 (330)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----TSTHHHHHHHHHHHHSCSCH
T ss_pred HHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-----CCHHHHHHHHHHHHHhhhhH
Confidence 3346677889999999999999999999999999999999999999999999888 56788999999999999 89
Q ss_pred HHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy17788 168 ESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQR 246 (365)
Q Consensus 168 ~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~r 246 (365)
+.|...|++++...|. ..+|..++.++...|++++|+..|+++++.. |.+..+|..+|.++...|++++|..+|++
T Consensus 108 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 184 (330)
T 3hym_B 108 EHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM---KGCHLPMLYIGLEYGLTNNSKLAERFFSQ 184 (330)
T ss_dssp HHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT---TTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999988875 5688889999999999999999999999988 88888899999999999999999999999
Q ss_pred HHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------CCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q psy17788 247 GLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSY---------PARVDVWGVYVDMLVKSDRVDLGRQVIQRA 317 (365)
Q Consensus 247 al~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~---------P~~~~~w~~~~~~~~~~g~~~~Ar~~~era 317 (365)
++...|.. ..++..+|.++...|++++|...|++++... |....+|..++.++...|++++|..+|+++
T Consensus 185 al~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 262 (330)
T 3hym_B 185 ALSIAPED--PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQA 262 (330)
T ss_dssp HHTTCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhCCCC--hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99988885 5677788999999999999999999999876 666788999999999999999999999999
Q ss_pred HhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q psy17788 318 VTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVR 359 (365)
Q Consensus 318 l~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~ 359 (365)
+.. . +....+|...+......|+.+.|...++++++..+
T Consensus 263 ~~~--~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 263 LVL--I-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp HHH--S-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred Hhh--C-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 974 2 34567788888888888999999998888876543
No 8
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.94 E-value=9.4e-25 Score=204.29 Aligned_cols=264 Identities=12% Similarity=0.045 Sum_probs=236.8
Q ss_pred Hhc-CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCH
Q psy17788 89 LLQ-NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTK 167 (365)
Q Consensus 89 l~~-~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~ 167 (365)
+.. ++..+|+..|++++..+|+++.+|..++.++...|++++|..+|++++...| ....+|..++.++...|++
T Consensus 74 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~l~~~~~~~g~~ 148 (368)
T 1fch_A 74 RLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-----DNQTALMALAVSFTNESLQ 148 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHcCCH
Confidence 444 6667999999999999999999999999999999999999999999999888 6789999999999999999
Q ss_pred HHHHHHHHHHHHcCCCHH-HHH----------------HHHHHHHHhCCHHHHHHHHHHHHHHhcCCCC--cHHHHHHHH
Q psy17788 168 ESLQECLHEAVRCNDETK-VYM----------------NMMEIYAASAQIRDLESTVKLLLKKAGQTHS--SVNIYLQCA 228 (365)
Q Consensus 168 ~~a~~v~~ral~~~~~~~-~~~----------------~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~a 228 (365)
+.|...|++++...|... ++. .++.++ ..|++++|+.+|+++++.. |. ++.+|..+|
T Consensus 149 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~---p~~~~~~~~~~l~ 224 (368)
T 1fch_A 149 RQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLD---PTSIDPDVQCGLG 224 (368)
T ss_dssp HHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHS---TTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhC---cCcccHHHHHHHH
Confidence 999999999999988543 221 355555 8999999999999999998 77 899999999
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChH
Q psy17788 229 TLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVD 308 (365)
Q Consensus 229 ~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~ 308 (365)
.++...|++++|..+|++++...|.. ..++..+|.++...|++++|...|++++..+|.+..+|..++.++...|+++
T Consensus 225 ~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~ 302 (368)
T 1fch_A 225 VLFNLSGEYDKAVDCFTAALSVRPND--YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHR 302 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH
Confidence 99999999999999999999999985 5678888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCC--------CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhc
Q psy17788 309 LGRQVIQRAVTQKLPP--------KKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNSKN 363 (365)
Q Consensus 309 ~Ar~~~eral~~~l~~--------~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~~~ 363 (365)
+|..+|++++...... +....+|..++......|+.+.+..++.++++.+.+.+.
T Consensus 303 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 365 (368)
T 1fch_A 303 EAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFG 365 (368)
T ss_dssp HHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHHhcC
Confidence 9999999999842111 112689999999999999999999999999999887654
No 9
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.94 E-value=5.1e-25 Score=203.07 Aligned_cols=215 Identities=16% Similarity=0.256 Sum_probs=196.2
Q ss_pred CChHHHHHHhhcCCCCHHHHHHHHHHHHc-------ccCH-------HHHHHHHHHHHh-hccCccccchHHHHHHHHHH
Q psy17788 96 VSPDGFDRMLLGQPNNSELWVKYMAYHLQ-------ATEI-------EKARSIARRALT-VINIRNEEDRLNVWTSLLNL 160 (365)
Q Consensus 96 ~a~~~fe~~l~~~p~~~~~w~~~~~~~~~-------~~~~-------e~A~~~~~raL~-~~p~~~~~~~~~~w~~~~~l 160 (365)
+++..|+++|..+|+++.+|+.|+.++.. .|++ ++|+.+|+||+. ..| ++..+|..++.+
T Consensus 34 ~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-----~~~~~~~~~~~~ 108 (308)
T 2ond_A 34 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-----KNMLLYFAYADY 108 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-----TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-----ccHHHHHHHHHH
Confidence 45678999999999999999999999874 4775 999999999999 467 678999999999
Q ss_pred HHHhCCHHHHHHHHHHHHHcCCC-HH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH-cCCh
Q psy17788 161 EHLYGTKESLQECLHEAVRCNDE-TK-VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLR-LGQK 237 (365)
Q Consensus 161 ~~~~g~~~~a~~v~~ral~~~~~-~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~-~g~~ 237 (365)
+...|+++.|+.+|++++...|. .. +|..++.++.+.|++++|+.+|+++++.. |.+..+|+..+.+... .|++
T Consensus 109 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---p~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 109 EESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA---RTRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp HHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST---TCCTHHHHHHHHHHHHTSCCH
T ss_pred HHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999885 34 89999999999999999999999999987 8889999988888765 6999
Q ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC-CChhHHHHHHHHHHhcCChHHHHHH
Q psy17788 238 DTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTS---YP-ARVDVWGVYVDMLVKSDRVDLGRQV 313 (365)
Q Consensus 238 ~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~---~P-~~~~~w~~~~~~~~~~g~~~~Ar~~ 313 (365)
++|+.+|++++...|.. ..+|..++.++...|++++|+.+|++++.. .| +...+|..++.++...|+.+.|+.+
T Consensus 186 ~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~ 263 (308)
T 2ond_A 186 SVAFKIFELGLKKYGDI--PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 263 (308)
T ss_dssp HHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999985 678899999999999999999999999996 44 4788999999999999999999999
Q ss_pred HHHHHhC
Q psy17788 314 IQRAVTQ 320 (365)
Q Consensus 314 ~eral~~ 320 (365)
+++++..
T Consensus 264 ~~~a~~~ 270 (308)
T 2ond_A 264 EKRRFTA 270 (308)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999984
No 10
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.94 E-value=3.4e-24 Score=212.02 Aligned_cols=247 Identities=17% Similarity=0.226 Sum_probs=155.3
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Q psy17788 101 FDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRC 180 (365)
Q Consensus 101 fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~ 180 (365)
|+++|..+|.+..+|+.++.. .+.|++++|+.+|++++..+| ....+|..|+.++...|+++.|+.+|++++..
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P-----~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~ 75 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFP-----SSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK 75 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Confidence 566777777777777777764 566777777777777777777 55677777777777777777777777777777
Q ss_pred CCCHHHHHHHHHHH-HHhCCHHHHHH----HHHHHHHHhcCCCCcHHHHHHHHHHHHH---------cCChHHHHHHHHH
Q psy17788 181 NDETKVYMNMMEIY-AASAQIRDLES----TVKLLLKKAGQTHSSVNIYLQCATLLLR---------LGQKDTARHILQR 246 (365)
Q Consensus 181 ~~~~~~~~~l~~~~-~~~g~~~~A~~----~~~~al~~~~~~~~~~~~~~~~a~~~~~---------~g~~~~A~~~l~r 246 (365)
+|+..+|..++.+. ...|+.+.|++ +|++++...|.++.+..+|..++.++.. .|+++.|+.+|++
T Consensus 76 ~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~ 155 (530)
T 2ooe_A 76 VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQR 155 (530)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHH
Confidence 77666776666543 33455555443 6666666554445666777777777665 5666777777777
Q ss_pred HHhcCCCcchHHHHHHHHHH------------------------------------------------------------
Q psy17788 247 GLNNLPPAVHVTLITRFALA------------------------------------------------------------ 266 (365)
Q Consensus 247 al~~~p~~~~~~~~~~~a~~------------------------------------------------------------ 266 (365)
++. .|......+|..++.+
T Consensus 156 al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~ 234 (530)
T 2ooe_A 156 GCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWK 234 (530)
T ss_dssp HTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHH
T ss_pred HHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHH
Confidence 766 4543222233222222
Q ss_pred -----HHHc----CCH----HHHHHHHHHHHHhCCCChhHHHHHHHHHHh-------cCChH-------HHHHHHHHHHh
Q psy17788 267 -----ENKF----GDA----SRAQALLEHTLTSYPARVDVWGVYVDMLVK-------SDRVD-------LGRQVIQRAVT 319 (365)
Q Consensus 267 -----~~~~----g~~----e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~-------~g~~~-------~Ar~~~eral~ 319 (365)
+... ++. .++..+|++++..+|.++++|..|+.++.. .|+++ +|+.+|++|+.
T Consensus 235 ~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~ 314 (530)
T 2ooe_A 235 KYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS 314 (530)
T ss_dssp HHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHH
Confidence 1110 111 245566777777777777777777776664 56665 67777777764
Q ss_pred CCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy17788 320 QKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQ 356 (365)
Q Consensus 320 ~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~ 356 (365)
. + .+....+|..|+.++...|+.+.|+.++++|++
T Consensus 315 ~-~-~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~ 349 (530)
T 2ooe_A 315 T-L-LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA 349 (530)
T ss_dssp T-T-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred H-h-CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC
Confidence 1 1 234566777777777777777777777777665
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.94 E-value=1.7e-23 Score=194.00 Aligned_cols=253 Identities=10% Similarity=0.058 Sum_probs=163.5
Q ss_pred CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788 92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ 171 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~ 171 (365)
++..+|+..|++++..+|+++.+|..++.++...|++++|...|++++...| ....+|..++.++...|+++.|.
T Consensus 17 g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~ 91 (359)
T 3ieg_A 17 GQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-----DFTAARLQRGHLLLKQGKLDEAE 91 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----CcchHHHHHHHHHHHcCChHHHH
Confidence 5556777777777777777777777777777777777777777777777666 45677777777777777777777
Q ss_pred HHHHHHHHcCC---CH-HHHHHH------------HHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcC
Q psy17788 172 ECLHEAVRCND---ET-KVYMNM------------MEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLG 235 (365)
Q Consensus 172 ~v~~ral~~~~---~~-~~~~~l------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g 235 (365)
..|++++...| .. .++..+ +.++...|++++|+.+|+++++.. |.++.+|..++.++...|
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 168 (359)
T 3ieg_A 92 DDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC---VWDAELRELRAECFIKEG 168 (359)
T ss_dssp HHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCchHHHHHHHHHHHHCC
Confidence 77777777766 32 344433 466666777777777777777766 666777777777777777
Q ss_pred ChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHH------------HHHHHh
Q psy17788 236 QKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVY------------VDMLVK 303 (365)
Q Consensus 236 ~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~------------~~~~~~ 303 (365)
++++|...|++++...|.. ..++..+|.++...|+++.|...|++++..+|++..+|..+ +.++..
T Consensus 169 ~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 246 (359)
T 3ieg_A 169 EPRKAISDLKAASKLKSDN--TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR 246 (359)
T ss_dssp CHHHHHHHHHHHHTTCSCC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777666664 34555566666666666666666666666666665555433 444555
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCcHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy17788 304 SDRVDLGRQVIQRAVTQKLPPKKLKP----LYMKWLKLEEQYGDAEAVENVKKEIEQY 357 (365)
Q Consensus 304 ~g~~~~Ar~~~eral~~~l~~~~~~~----~~~~~l~~e~~~G~~~~a~~v~~kA~~~ 357 (365)
.|++++|..+|++++.. .|. ... ++...+......|+++.|..+++++++.
T Consensus 247 ~~~~~~A~~~~~~~~~~--~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 301 (359)
T 3ieg_A 247 DGRYTDATSKYESVMKT--EPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM 301 (359)
T ss_dssp TTCHHHHHHHHHHHHHH--CCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhc--CCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 56666666666665552 111 221 2223344445555555555555555553
No 12
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.93 E-value=2.4e-24 Score=197.57 Aligned_cols=260 Identities=12% Similarity=0.070 Sum_probs=233.3
Q ss_pred CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788 92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ 171 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~ 171 (365)
++..+|+..|++++..+|++..+|..++.++...|++++|..+|++++...| ....+|..++.++...|+++.|.
T Consensus 35 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~la~~~~~~~~~~~A~ 109 (327)
T 3cv0_A 35 ANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-----KDIAVHAALAVSHTNEHNANAAL 109 (327)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-----CCHHHHHHHHHHHHHcCCHHHHH
Confidence 6666899999999999999999999999999999999999999999999888 66889999999999999999999
Q ss_pred HHHHHHHHcCCCHH-HHHHH--------------HH-HHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcC
Q psy17788 172 ECLHEAVRCNDETK-VYMNM--------------ME-IYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLG 235 (365)
Q Consensus 172 ~v~~ral~~~~~~~-~~~~l--------------~~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g 235 (365)
..|++++...|... ++..+ +. ++...|++++|..+|+++++.. |.++.+|..+|.++...|
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~ 186 (327)
T 3cv0_A 110 ASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN---PNDAQLHASLGVLYNLSN 186 (327)
T ss_dssp HHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHhc
Confidence 99999999887543 33333 44 4778899999999999999998 899999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q psy17788 236 QKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQ 315 (365)
Q Consensus 236 ~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~e 315 (365)
++++|..++++++...|.. ..++..+|.++...|++++|...|++++...|.+..+|..++.++...|++++|..+|+
T Consensus 187 ~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 264 (327)
T 3cv0_A 187 NYDSAAANLRRAVELRPDD--AQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLV 264 (327)
T ss_dssp CHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 9999999999999999985 56778889999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCC-----------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhc
Q psy17788 316 RAVTQKLPPKK-----------LKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNSKN 363 (365)
Q Consensus 316 ral~~~l~~~~-----------~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~~~ 363 (365)
+++.. .|.. ...+|...+......|+.+.|..+++++++.+++..+
T Consensus 265 ~a~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 321 (327)
T 3cv0_A 265 RAIYM--QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEFG 321 (327)
T ss_dssp HHHHH--HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHTT
T ss_pred HHHHh--CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhhh
Confidence 99984 2221 5778999999999999999999999999998887654
No 13
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.93 E-value=2.2e-24 Score=202.30 Aligned_cols=253 Identities=11% Similarity=0.056 Sum_probs=216.9
Q ss_pred hHHHHHHhhcCCCCH----HHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHH
Q psy17788 98 PDGFDRMLLGQPNNS----ELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQEC 173 (365)
Q Consensus 98 ~~~fe~~l~~~p~~~----~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v 173 (365)
...+.+.+...|+++ ..|+..+..+...|++++|+.+|++++...| ....+|..++.++...|+++.|+..
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~g~~~~A~~~ 121 (365)
T 4eqf_A 47 VSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-----GDAEAWQFLGITQAENENEQAAIVA 121 (365)
T ss_dssp ------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-----CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 344555555555544 4599999999999999999999999999888 6789999999999999999999999
Q ss_pred HHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHH----------HHHHHHcCChHHHHH
Q psy17788 174 LHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQC----------ATLLLRLGQKDTARH 242 (365)
Q Consensus 174 ~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~----------a~~~~~~g~~~~A~~ 242 (365)
|++++..+|. ..+|..++.+|...|++++|+.+|+++++.. |.+..++..+ +.++...|++++|..
T Consensus 122 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 198 (365)
T 4eqf_A 122 LQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQN---PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKE 198 (365)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---HHHHCC-------------------CCHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhC---ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHH
Confidence 9999999885 6789999999999999999999999999987 6666666555 889999999999999
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q psy17788 243 ILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKL 322 (365)
Q Consensus 243 ~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l 322 (365)
+|++++...|......++..+|.++...|++++|...|++++..+|++..+|..++.++...|++++|+.+|++++..
T Consensus 199 ~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-- 276 (365)
T 4eqf_A 199 LYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI-- 276 (365)
T ss_dssp HHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Confidence 999999999985456788899999999999999999999999999999999999999999999999999999999984
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhh
Q psy17788 323 PPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNS 361 (365)
Q Consensus 323 ~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~ 361 (365)
.+.....|...+..+...|+++.|...+++|++..++.
T Consensus 277 -~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 314 (365)
T 4eqf_A 277 -QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKS 314 (365)
T ss_dssp -CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC
T ss_pred -CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 34467889999999999999999999999999988763
No 14
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.93 E-value=1.3e-23 Score=212.42 Aligned_cols=255 Identities=10% Similarity=0.097 Sum_probs=214.5
Q ss_pred CCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCC---HHHHH
Q psy17788 95 PVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGT---KESLQ 171 (365)
Q Consensus 95 p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~---~~~a~ 171 (365)
++.+..|++.|..+|.+...|+.|+.++.+.+.++.+|.+|+|+|..+| ....+|..|+.++...|+ ++.+.
T Consensus 49 ~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP-----~~~~lW~~Yi~~E~~~~~~~~~~~v~ 123 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFP-----LMANIWCMRLSLEFDKMEELDAAVIE 123 (679)
T ss_dssp SCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHTC--CCCHHHHH
T ss_pred HHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHhhCCcchHHHHH
Confidence 3667789999999999999999999999999999999999999999999 668999999999999999 99999
Q ss_pred HHHHHHHHcC---CCHHHHHHHHHHHHHhCCH--------HHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHH------
Q psy17788 172 ECLHEAVRCN---DETKVYMNMMEIYAASAQI--------RDLESTVKLLLKKAGQ-THSSVNIYLQCATLLLR------ 233 (365)
Q Consensus 172 ~v~~ral~~~---~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~al~~~~~-~~~~~~~~~~~a~~~~~------ 233 (365)
.+|+||+..+ |+..+|..++.+..+.+.. +..+++|++++...|. ++.+..+|..|+.|+..
T Consensus 124 ~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~ 203 (679)
T 4e6h_A 124 PVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNK 203 (679)
T ss_dssp HHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCc
Confidence 9999999998 8889999999988776654 4456899999998776 67788999999999763
Q ss_pred ---cCChHHHHHHHHHHHhcCCCcchHH----------------------------------------------------
Q psy17788 234 ---LGQKDTARHILQRGLNNLPPAVHVT---------------------------------------------------- 258 (365)
Q Consensus 234 ---~g~~~~A~~~l~ral~~~p~~~~~~---------------------------------------------------- 258 (365)
+++.+.++.+|+|+|. .|......
T Consensus 204 ~eeq~~~~~~R~iy~raL~-iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~ 282 (679)
T 4e6h_A 204 FEEQQRVQYIRKLYKTLLC-QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPIT 282 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTT-SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSS
T ss_pred HHHHhHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccc
Confidence 3457889999999985 45433333
Q ss_pred ---------------------HHHHHHHHHHHcC-------CHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHH
Q psy17788 259 ---------------------LITRFALAENKFG-------DASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLG 310 (365)
Q Consensus 259 ---------------------~~~~~a~~~~~~g-------~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~A 310 (365)
+|.+++.++...+ ..++.+.+|+++|..+|..+++|..|+.++...|+.+.|
T Consensus 283 ~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a 362 (679)
T 4e6h_A 283 LNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTV 362 (679)
T ss_dssp STTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTH
T ss_pred cccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHH
Confidence 3444444444332 134567899999999999999999999999999999999
Q ss_pred H-HHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy17788 311 R-QVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYV 358 (365)
Q Consensus 311 r-~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v 358 (365)
+ .+|+||+. .+ |....+|..|+.++...|+.+.|+.+++++++.+
T Consensus 363 ~r~il~rAi~-~~--P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l 408 (679)
T 4e6h_A 363 ITKYLKLGQQ-CI--PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRI 408 (679)
T ss_dssp HHHHHHHHHH-HC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-hC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 6 99999998 33 3568899999999999999999999999999875
No 15
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=4.5e-23 Score=198.26 Aligned_cols=254 Identities=9% Similarity=0.013 Sum_probs=199.4
Q ss_pred CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchH---HHHHHH-----------
Q psy17788 92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRL---NVWTSL----------- 157 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~---~~w~~~----------- 157 (365)
++..+|+..|++++..+|++..+|..++.++...|++++|+.+|++++...| ... .+|..+
T Consensus 74 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~ 148 (450)
T 2y4t_A 74 GKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP-----SENEEKEAQSQLIKSDEMQRLRS 148 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC-----CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CChhhHHHHHHHHHHHHHHHHHH
Confidence 5555777888888888888888888888888888888888888888887666 444 555554
Q ss_pred -HHHHHHhCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcC
Q psy17788 158 -LNLEHLYGTKESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLG 235 (365)
Q Consensus 158 -~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g 235 (365)
+..+...|+++.|..+|++++...|. ..++..++.+|...|++++|+.+|+++++.. |.++.+|..+|.++...|
T Consensus 149 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g 225 (450)
T 2y4t_A 149 QALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK---NDNTEAFYKISTLYYQLG 225 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH---CSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcC
Confidence 33366778888888888888877763 4577788888888888888888888888887 888888888888888888
Q ss_pred ChHHHHHHHHHHHhcCCCcchHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCChh----HHHHHHH
Q psy17788 236 QKDTARHILQRGLNNLPPAVHVTLITRF------------ALAENKFGDASRAQALLEHTLTSYPARVD----VWGVYVD 299 (365)
Q Consensus 236 ~~~~A~~~l~ral~~~p~~~~~~~~~~~------------a~~~~~~g~~e~A~~~fe~~l~~~P~~~~----~w~~~~~ 299 (365)
++++|..+|++++...|.... ++..+ |.++...|++++|..+|++++...|.++. +|..++.
T Consensus 226 ~~~~A~~~~~~~~~~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~ 303 (450)
T 2y4t_A 226 DHELSLSEVRECLKLDQDHKR--CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICH 303 (450)
T ss_dssp CHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCChHH--HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 888888888888888887533 33333 77888888888888888888888888744 6778888
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy17788 300 MLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYV 358 (365)
Q Consensus 300 ~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v 358 (365)
++.+.|++++|..+|++++.. .+....+|...+......|+++.|..+++++++.-
T Consensus 304 ~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 359 (450)
T 2y4t_A 304 CFSKDEKPVEAIRVCSEVLQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN 359 (450)
T ss_dssp HHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred HHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 888888888888888888874 23456788888888888889888888888887653
No 16
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=3.7e-23 Score=198.90 Aligned_cols=257 Identities=10% Similarity=0.044 Sum_probs=232.5
Q ss_pred CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788 92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ 171 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~ 171 (365)
++..+|+..|++++..+|++..+|..++.++...|++++|..+|++++...| ....+|..++.++...|+++.|.
T Consensus 40 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~g~~~~A~ 114 (450)
T 2y4t_A 40 GQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-----DFTAARLQRGHLLLKQGKLDEAE 114 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-----CcHHHHHHHHHHHHHcCCHHHHH
Confidence 6667999999999999999999999999999999999999999999999888 66899999999999999999999
Q ss_pred HHHHHHHHcCCCH----HHHHHH------------HHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcC
Q psy17788 172 ECLHEAVRCNDET----KVYMNM------------MEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLG 235 (365)
Q Consensus 172 ~v~~ral~~~~~~----~~~~~l------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g 235 (365)
.+|++++...|.. .+|..+ +..+...|++++|+.+|++++... |.++.++..++.++...|
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g 191 (450)
T 2y4t_A 115 DDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC---VWDAELRELRAECFIKEG 191 (450)
T ss_dssp HHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHCC
Confidence 9999999999865 444444 556899999999999999999998 999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHH------------HHHHHh
Q psy17788 236 QKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVY------------VDMLVK 303 (365)
Q Consensus 236 ~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~------------~~~~~~ 303 (365)
++++|..+|++++...|.. ..++..+|.++...|++++|...|++++..+|++..+|..+ +.++..
T Consensus 192 ~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (450)
T 2y4t_A 192 EPRKAISDLKAASKLKNDN--TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR 269 (450)
T ss_dssp CGGGGHHHHHHHHHHHCSC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998885 66788889999999999999999999999999999998877 899999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q psy17788 304 SDRVDLGRQVIQRAVTQKLPPKKL---KPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRN 360 (365)
Q Consensus 304 ~g~~~~Ar~~~eral~~~l~~~~~---~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~ 360 (365)
.|++++|..+|++++.. .|... ..+|...+......|+.+.|...++++++..+.
T Consensus 270 ~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~ 327 (450)
T 2y4t_A 270 DGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD 327 (450)
T ss_dssp HTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred cCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 99999999999999984 33322 346777888888999999999999999976443
No 17
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.93 E-value=3.1e-23 Score=206.71 Aligned_cols=256 Identities=10% Similarity=0.021 Sum_probs=227.5
Q ss_pred CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788 92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ 171 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~ 171 (365)
++..+|+..|++++..+|++..+|..++..+...|++++|..+|++++...| ....+|..++.++...|+++.|.
T Consensus 319 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~ 393 (597)
T 2xpi_A 319 SRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP-----EKAVTWLAVGIYYLCVNKISEAR 393 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----TSHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc-----ccHHHHHHHHHHHHHhccHHHHH
Confidence 5556888999999998999999999999999999999999999999988777 56789999999999999999999
Q ss_pred HHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy17788 172 ECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNN 250 (365)
Q Consensus 172 ~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~ 250 (365)
.+|++++...|. ..+|..++.+|.+.|++++|+++|++++... |.+..+|..++.++...|++++|..+|++++..
T Consensus 394 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 394 RYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF---QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL 470 (597)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999998875 5688999999999999999999999999887 889999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q psy17788 251 LPPAVHVTLITRFALAENKFGDASRAQALLEHTLTS------YPAR-VDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLP 323 (365)
Q Consensus 251 ~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~------~P~~-~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~ 323 (365)
.|.+ ..++..+|.++.+.|++++|..+|++++.. .|.+ ..+|..++.++.+.|++++|..+|++++..
T Consensus 471 ~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 545 (597)
T 2xpi_A 471 FQYD--PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL--- 545 (597)
T ss_dssp CCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred CCCC--hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---
Confidence 8885 567788899999999999999999999988 5654 678999999999999999999999999974
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q psy17788 324 PKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRN 360 (365)
Q Consensus 324 ~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~ 360 (365)
.+....+|...+..+...|+.+.|..+++++++.-+.
T Consensus 546 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 546 STNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 2446788999999999999999999999999886543
No 18
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=2.6e-22 Score=197.13 Aligned_cols=264 Identities=10% Similarity=0.038 Sum_probs=228.5
Q ss_pred HHHHhcCCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhC
Q psy17788 86 EDELLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYG 165 (365)
Q Consensus 86 e~~l~~~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g 165 (365)
...+..++..+|+..|++++..+|+++.+|..++.++...|++++|+..|++++...| ++..+|..++.++...|
T Consensus 33 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g 107 (537)
T 3fp2_A 33 NHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-----DHSKALLRRASANESLG 107 (537)
T ss_dssp HHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHT
T ss_pred HHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----chHHHHHHHHHHHHHcC
Confidence 3334448888999999999999999999999999999999999999999999999888 67888998888888888
Q ss_pred CHHHHHHHHH----------------------------------------------------------------------
Q psy17788 166 TKESLQECLH---------------------------------------------------------------------- 175 (365)
Q Consensus 166 ~~~~a~~v~~---------------------------------------------------------------------- 175 (365)
+++.|...|+
T Consensus 108 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (537)
T 3fp2_A 108 NFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSS 187 (537)
T ss_dssp CHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCC
T ss_pred CHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhcc
Confidence 8777766552
Q ss_pred ---------------------------------------HHHHcCCC--------HHHHHHHHHHHHHhCCHHHHHHHHH
Q psy17788 176 ---------------------------------------EAVRCNDE--------TKVYMNMMEIYAASAQIRDLESTVK 208 (365)
Q Consensus 176 ---------------------------------------ral~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~ 208 (365)
+++...|. ..++..++.++...|++++|...|+
T Consensus 188 ~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 267 (537)
T 3fp2_A 188 NYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQ 267 (537)
T ss_dssp SSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 33333333 1246667788889999999999999
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17788 209 LLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYP 288 (365)
Q Consensus 209 ~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P 288 (365)
+++... |. +.+|..+|.++...|++++|..+|++++...|.. ..++..+|.++...|+++.|...|++++..+|
T Consensus 268 ~~~~~~---~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 341 (537)
T 3fp2_A 268 ESINLH---PT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEY--PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP 341 (537)
T ss_dssp HHHHHC---CC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHhcC---CC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Confidence 999987 66 9999999999999999999999999999999985 56778889999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhc
Q psy17788 289 ARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNSKN 363 (365)
Q Consensus 289 ~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~~~ 363 (365)
++..+|..++.++...|++++|..+|++++.. .+....+|..++......|+++.|...++++++..+....
T Consensus 342 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 342 ENVYPYIQLACLLYKQGKFTESEAFFNETKLK---FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence 99999999999999999999999999999984 2345678888899999999999999999999998776543
No 19
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.92 E-value=6e-23 Score=190.25 Aligned_cols=261 Identities=8% Similarity=-0.011 Sum_probs=229.5
Q ss_pred CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHH------------HH
Q psy17788 92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSL------------LN 159 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~------------~~ 159 (365)
++..+|+..|++++..+|++..+|..++.++...|++++|..+|++++...|.. .....+|..+ +.
T Consensus 51 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~ 128 (359)
T 3ieg_A 51 GKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE--QEEKEAESQLVKADEMQRLRSQAL 128 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcc--cChHHHHHHHHHHHHHHHHHHHHH
Confidence 677799999999999999999999999999999999999999999999977711 0124555555 67
Q ss_pred HHHHhCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChH
Q psy17788 160 LEHLYGTKESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKD 238 (365)
Q Consensus 160 l~~~~g~~~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~ 238 (365)
++...|+++.|..+|++++..+|. ..++..++.++...|++++|...|++++... |.++.+|..+|.++...|+++
T Consensus 129 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~ 205 (359)
T 3ieg_A 129 DAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK---SDNTEAFYKISTLYYQLGDHE 205 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---SCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHH
Confidence 888999999999999999999884 5688999999999999999999999999988 999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcchHHHH----------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH----HHHHHHHHHhc
Q psy17788 239 TARHILQRGLNNLPPAVHVTLI----------TRFALAENKFGDASRAQALLEHTLTSYPARVDV----WGVYVDMLVKS 304 (365)
Q Consensus 239 ~A~~~l~ral~~~p~~~~~~~~----------~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~----w~~~~~~~~~~ 304 (365)
+|...|++++...|.......+ ...|.++...|++++|...|++++...|++... +..++.++...
T Consensus 206 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 285 (359)
T 3ieg_A 206 LSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKD 285 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHc
Confidence 9999999999999986543322 234888999999999999999999999998744 56789999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q psy17788 305 DRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRN 360 (365)
Q Consensus 305 g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~ 360 (365)
|++++|..+|++++.. .+....+|...+......|+.+.|...+++|++.-+.
T Consensus 286 ~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 286 EKPVEAIRICSEVLQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp TCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred cCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999984 3446788999999999999999999999999976544
No 20
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.92 E-value=2.7e-23 Score=203.89 Aligned_cols=253 Identities=13% Similarity=0.092 Sum_probs=209.3
Q ss_pred CChHHHHHHhhc---CCCCHHHHHHHHHHHHc----ccCHHHHHHHHHHHHhhccCccccc-------------------
Q psy17788 96 VSPDGFDRMLLG---QPNNSELWVKYMAYHLQ----ATEIEKARSIARRALTVINIRNEED------------------- 149 (365)
Q Consensus 96 ~a~~~fe~~l~~---~p~~~~~w~~~~~~~~~----~~~~e~A~~~~~raL~~~p~~~~~~------------------- 149 (365)
.....|++++.. +|.+..+|..|+.++.. .++++.+|.+|+|||. .|......
T Consensus 66 ~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~-~P~~~~~~lw~~Y~~fE~~~~~~~~~~ 144 (493)
T 2uy1_A 66 KLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ-TPMGSLSELWKDFENFELELNKITGKK 144 (493)
T ss_dssp CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT-SCCTTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh-ChhhhHHHHHHHHHHHHHHhccccHHH
Confidence 567889999974 79999999999999763 5789999999999999 66542100
Q ss_pred --------------------------hHHHHHHHHHHHHHhC--C-----HHHHHHHHHHHHHcCCC-HHHHHHHHHHHH
Q psy17788 150 --------------------------RLNVWTSLLNLEHLYG--T-----KESLQECLHEAVRCNDE-TKVYMNMMEIYA 195 (365)
Q Consensus 150 --------------------------~~~~w~~~~~l~~~~g--~-----~~~a~~v~~ral~~~~~-~~~~~~l~~~~~ 195 (365)
...+|..|+.++...+ . .+.+..+|++++..+|. ..+|..++.++.
T Consensus 145 ~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~ 224 (493)
T 2uy1_A 145 IVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLI 224 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 1126777777776431 1 34578899999998874 579999999999
Q ss_pred HhCCHHHHHHHHHHHHHHhcCCC-------------------------------------CcHHHHHHHHHHHHHcCChH
Q psy17788 196 ASAQIRDLESTVKLLLKKAGQTH-------------------------------------SSVNIYLQCATLLLRLGQKD 238 (365)
Q Consensus 196 ~~g~~~~A~~~~~~al~~~~~~~-------------------------------------~~~~~~~~~a~~~~~~g~~~ 238 (365)
+.|+.++|+.+|++++.. +.+. ....+|+.|+.++.+.++.+
T Consensus 225 ~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~ 303 (493)
T 2uy1_A 225 GIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLE 303 (493)
T ss_dssp HTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHH
Confidence 999999999999999976 3210 01256888888888888999
Q ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q psy17788 239 TARHILQRGLNNLPPAVHVTLITRFALAENKFG-DASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRA 317 (365)
Q Consensus 239 ~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g-~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~era 317 (365)
.|+.+|++| . .|.. ...+|..+|.+++..| ++++|+.+|+.+++.+|+++++|..|++++...|+.+.||.+|+++
T Consensus 304 ~AR~i~~~A-~-~~~~-~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 304 LFRKLFIEL-G-NEGV-GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHH-T-TSCC-CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHh-h-CCCC-ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999 4 4432 3567888899999887 6999999999999999999999999999999999999999999998
Q ss_pred HhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q psy17788 318 VTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRN 360 (365)
Q Consensus 318 l~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~ 360 (365)
. +...+|..|++||..+|+.++++.+++++++.+.+
T Consensus 381 ~-------k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~~ 416 (493)
T 2uy1_A 381 E-------KTSRMWDSMIEYEFMVGSMELFRELVDQKMDAIKA 416 (493)
T ss_dssp C-------CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHT
T ss_pred H-------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhcc
Confidence 3 36899999999999999999999999999998763
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.92 E-value=1.4e-23 Score=196.28 Aligned_cols=258 Identities=11% Similarity=0.058 Sum_probs=227.6
Q ss_pred CCCCCChH-HHHHHhhcCCCCH----HHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCC
Q psy17788 92 NGEPVSPD-GFDRMLLGQPNNS----ELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGT 166 (365)
Q Consensus 92 ~~~p~a~~-~fe~~l~~~p~~~----~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~ 166 (365)
++..+++. .|++++...|+++ ..|+..+..+...|++++|..+|++++...| ....+|..++.++...|+
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-----KHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-----TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHCcC
Confidence 44556777 8999988888764 5699999999999999999999999999888 678999999999999999
Q ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHH----------------HHHH
Q psy17788 167 KESLQECLHEAVRCND-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYL----------------QCAT 229 (365)
Q Consensus 167 ~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~----------------~~a~ 229 (365)
++.|...|++++..+| ...+|..++.+|...|++++|+..|++++... |.+..++. .++.
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT---PAYAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS---TTTGGGCC---------------CTTHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cCcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 9999999999999988 45788999999999999999999999999987 77766665 4555
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHH
Q psy17788 230 LLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDL 309 (365)
Q Consensus 230 ~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~ 309 (365)
++ ..|++++|..+|++++...|......++..+|.++...|++++|...|++++..+|+++.+|..++.++...|++++
T Consensus 191 ~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 191 LL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred Hh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHH
Confidence 55 89999999999999999999855577888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhh
Q psy17788 310 GRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNS 361 (365)
Q Consensus 310 Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~ 361 (365)
|..+|++++.. .+.....|...+......|+++.|...+++|++..+..
T Consensus 270 A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 270 AVAAYRRALEL---QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp HHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 99999999984 34567888999999999999999999999999987765
No 22
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.92 E-value=6.5e-23 Score=204.42 Aligned_cols=253 Identities=11% Similarity=0.025 Sum_probs=230.9
Q ss_pred CCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHH
Q psy17788 95 PVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECL 174 (365)
Q Consensus 95 p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~ 174 (365)
.+|+..|++++.. |.+..+|..++..+.+.|++++|..+|++++...| ....+|..++.++...|+.+.|..+|
T Consensus 289 ~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~ 362 (597)
T 2xpi_A 289 RRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-----YNLDVYPLHLASLHESGEKNKLYLIS 362 (597)
T ss_dssp HHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCCTTHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-----ccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3677888888876 78999999999999999999999999999999877 55678999999999999999999999
Q ss_pred HHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q psy17788 175 HEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPP 253 (365)
Q Consensus 175 ~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~ 253 (365)
++++...|. ..+|..++.+|.+.|++++|..+|+++++.. |.+..+|..++..+...|++++|..+|++++...|.
T Consensus 363 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 439 (597)
T 2xpi_A 363 NDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD---PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG 439 (597)
T ss_dssp HHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT
T ss_pred HHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 999988875 5788999999999999999999999999988 899999999999999999999999999999999998
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCCCcHH
Q psy17788 254 AVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ----KLPPKKLKP 329 (365)
Q Consensus 254 ~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~----~l~~~~~~~ 329 (365)
+ ..++..++.++.+.|++++|..+|++++..+|.++.+|..++.++.+.|++++|..+|++++.. ...|.....
T Consensus 440 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~ 517 (597)
T 2xpi_A 440 T--HLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAA 517 (597)
T ss_dssp C--SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHH
T ss_pred c--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHH
Confidence 5 4567788999999999999999999999999999999999999999999999999999999974 223333378
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy17788 330 LYMKWLKLEEQYGDAEAVENVKKEIEQYV 358 (365)
Q Consensus 330 ~~~~~l~~e~~~G~~~~a~~v~~kA~~~v 358 (365)
+|...+......|+.+.|..+++++++.-
T Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 518 TWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999998754
No 23
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.92 E-value=4.1e-23 Score=189.61 Aligned_cols=244 Identities=13% Similarity=0.068 Sum_probs=217.9
Q ss_pred CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHccc-CHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHH
Q psy17788 92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQAT-EIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESL 170 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~-~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a 170 (365)
++..+++..|++++..+|+++.+|..++.++...| ++++|..+|++++...| ....+|..++.++...|+++.|
T Consensus 70 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~l~~~~~~~~~~~~A 144 (330)
T 3hym_B 70 NKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEK-----TYGPAWIAYGHSFAVESEHDQA 144 (330)
T ss_dssp TCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCT-----TCTHHHHHHHHHHHHHTCHHHH
T ss_pred hhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-----ccHHHHHHHHHHHHHccCHHHH
Confidence 66668899999999999999999999999999999 99999999999999888 6678999999999999999999
Q ss_pred HHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy17788 171 QECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLN 249 (365)
Q Consensus 171 ~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~ 249 (365)
...|++++...|. ..++..++.+|...|++++|...|+++++.. |.++.+|..+|.++...|++++|..+|++++.
T Consensus 145 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 221 (330)
T 3hym_B 145 MAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA---PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALE 221 (330)
T ss_dssp HHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 9999999999885 5688889999999999999999999999998 99999999999999999999999999999998
Q ss_pred cCCC-------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q psy17788 250 NLPP-------AVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKL 322 (365)
Q Consensus 250 ~~p~-------~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l 322 (365)
..|. .....++..+|.++...|++++|...|++++..+|++..+|..++.++...|++++|..+|++++..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-- 299 (330)
T 3hym_B 222 KIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL-- 299 (330)
T ss_dssp HHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--
T ss_pred HhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--
Confidence 7532 1134577888999999999999999999999999999999999999999999999999999999974
Q ss_pred CCCCcHHHHHHHHH-HHHhcCCHHH
Q psy17788 323 PPKKLKPLYMKWLK-LEEQYGDAEA 346 (365)
Q Consensus 323 ~~~~~~~~~~~~l~-~e~~~G~~~~ 346 (365)
.| .....|..... ++...|+.+.
T Consensus 300 ~p-~~~~~~~~l~~~~~~~~g~~~a 323 (330)
T 3hym_B 300 RR-DDTFSVTMLGHCIEMYIGDSEA 323 (330)
T ss_dssp CS-CCHHHHHHHHHHHHTTTTC---
T ss_pred CC-CchHHHHHHHHHHHHHhCchhc
Confidence 33 45666666666 4467787653
No 24
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.92 E-value=3e-23 Score=181.55 Aligned_cols=200 Identities=16% Similarity=0.094 Sum_probs=174.5
Q ss_pred CCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HHHH
Q psy17788 109 PNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-TKVY 187 (365)
Q Consensus 109 p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~ 187 (365)
|+++.+|..++..+...|++++|...|++++...| ++..+|..++.++...|+++.|+..|++++..+|. ..+|
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~ 76 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENP-----QDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGY 76 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-----SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 88899999999999999999999999999999999 77899999999999999999999999999999985 5688
Q ss_pred HHHHHHHHHh-----------CCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcch
Q psy17788 188 MNMMEIYAAS-----------AQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVH 256 (365)
Q Consensus 188 ~~l~~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~ 256 (365)
..++.++... |++++|+..|+++++.. |.++.+|..+|.++...|++++|+..|++++... . +
T Consensus 77 ~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~--~ 150 (217)
T 2pl2_A 77 MVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN---PRYAPLHLQRGLVYALLGERDKAEASLKQALALE-D--T 150 (217)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-C--C
T ss_pred HHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-c--c
Confidence 9999999999 99999999999999998 9999999999999999999999999999999988 4 4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788 257 VTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVT 319 (365)
Q Consensus 257 ~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~ 319 (365)
..++..+|.++...|++++|+..|++++..+|+++.++..++.++...|++++|+..|+++-.
T Consensus 151 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 151 PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC----------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 678889999999999999999999999999999999999999999999999999999998864
No 25
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.91 E-value=5.9e-23 Score=195.05 Aligned_cols=241 Identities=9% Similarity=0.043 Sum_probs=214.4
Q ss_pred HHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHcC
Q psy17788 103 RMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGT-KESLQECLHEAVRCN 181 (365)
Q Consensus 103 ~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~-~~~a~~v~~ral~~~ 181 (365)
.++..+|++..+|..++.++...|++++|...|+++|...| .+..+|..++.++...|. ++.|+..|++++..+
T Consensus 88 ~ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-----~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~ 162 (382)
T 2h6f_A 88 VQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNA-----ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ 162 (382)
T ss_dssp SEECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred hhhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-----cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC
Confidence 35778999999999999999999999999999999999999 789999999999999996 999999999999999
Q ss_pred CC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHH
Q psy17788 182 DE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLI 260 (365)
Q Consensus 182 ~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~ 260 (365)
|. ..+|..++.++...|++++|+..|++++... |.+..+|..+|.++...|++++|+..|+++|...|.+ ..+|
T Consensus 163 P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld---P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~--~~a~ 237 (382)
T 2h6f_A 163 PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD---AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN--NSVW 237 (382)
T ss_dssp TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC--HHHH
T ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--HHHH
Confidence 84 5799999999999999999999999999998 9999999999999999999999999999999999996 5677
Q ss_pred HHHHHHHHH-cCCHHHH-----HHHHHHHHHhCCCChhHHHHHHHHHHhcC--ChHHHHHHHHHHHhCCCCCCCcHHHHH
Q psy17788 261 TRFALAENK-FGDASRA-----QALLEHTLTSYPARVDVWGVYVDMLVKSD--RVDLGRQVIQRAVTQKLPPKKLKPLYM 332 (365)
Q Consensus 261 ~~~a~~~~~-~g~~e~A-----~~~fe~~l~~~P~~~~~w~~~~~~~~~~g--~~~~Ar~~~eral~~~l~~~~~~~~~~ 332 (365)
..+|.++.. .|..++| ...|++++..+|++..+|..++.++...| ++++|...++++ .. .+....++.
T Consensus 238 ~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~---~p~~~~al~ 313 (382)
T 2h6f_A 238 NQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP---SHSSPYLIA 313 (382)
T ss_dssp HHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT---TCCCHHHHH
T ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc---CCCCHHHHH
Confidence 888999999 5665777 59999999999999999999999999988 689999999887 42 345677777
Q ss_pred HHHHHHHhcC--------C-HHHHHHHHHHH-HHH
Q psy17788 333 KWLKLEEQYG--------D-AEAVENVKKEI-EQY 357 (365)
Q Consensus 333 ~~l~~e~~~G--------~-~~~a~~v~~kA-~~~ 357 (365)
..++++...| + .+.|..+++++ ++.
T Consensus 314 ~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 314 FLVDIYEDMLENQCDNKEDILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh
Confidence 7777776664 2 47788888887 543
No 26
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=5.5e-22 Score=193.37 Aligned_cols=168 Identities=7% Similarity=-0.030 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHH
Q psy17788 185 KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFA 264 (365)
Q Consensus 185 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a 264 (365)
.+|..++.++...|++++|..+|++++... |. +.+|..++.++...|++++|..+|++++...|.. ..++..+|
T Consensus 238 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~ 311 (514)
T 2gw1_A 238 ISLEHTGIFKFLKNDPLGAHEDIKKAIELF---PR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNN--SSVYYHRG 311 (514)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHC---CC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTC--THHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---cc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCC--HHHHHHHH
Confidence 355666777777777777777777777776 66 7777777777777788888888888887777765 34566678
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCH
Q psy17788 265 LAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDA 344 (365)
Q Consensus 265 ~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~ 344 (365)
.++...|++++|...|++++..+|.+..+|..++.++...|+++.|..+|++++.. . +....+|...+......|++
T Consensus 312 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~-~~~~~~~~~la~~~~~~~~~ 388 (514)
T 2gw1_A 312 QMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--F-PEAPEVPNFFAEILTDKNDF 388 (514)
T ss_dssp HHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--S-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--c-ccCHHHHHHHHHHHHHCCCH
Confidence 88888888888888888888888888888888888888888888888888888873 2 23456677777777778888
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy17788 345 EAVENVKKEIEQYVRNS 361 (365)
Q Consensus 345 ~~a~~v~~kA~~~v~~~ 361 (365)
+.|...++++++..+..
T Consensus 389 ~~A~~~~~~a~~~~~~~ 405 (514)
T 2gw1_A 389 DKALKQYDLAIELENKL 405 (514)
T ss_dssp HHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhhhcc
Confidence 88888888888776654
No 27
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.90 E-value=7.7e-22 Score=176.76 Aligned_cols=239 Identities=8% Similarity=0.008 Sum_probs=182.5
Q ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC----HHHH
Q psy17788 112 SELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE----TKVY 187 (365)
Q Consensus 112 ~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~----~~~~ 187 (365)
+..++.++.++...|++++|+.+|++++...| ....+|..++.++...|+++.|+..|++++...++ ..+|
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 77 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKY-----NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADF 77 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-----CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHH
Confidence 45677888888888888888888888888777 44567888888888888888888888888874322 2347
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Q psy17788 188 MNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAE 267 (365)
Q Consensus 188 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~ 267 (365)
..++.++...|++++|+..|+++++.. |.++.+|..+|.++...|++++|..+|++++...|.. ..++..+|...
T Consensus 78 ~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~l~~~~ 152 (272)
T 3u4t_A 78 EYYGKILMKKGQDSLAIQQYQAAVDRD---TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD--PKVFYELGQAY 152 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCC--HHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCc--HHHHHHHHHHH
Confidence 788888888888888888888888887 7888888888888888888888888888888887774 55667777455
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCC---hHHHHHHHHHHHhCCCCCCC-----cHHHHHHHHHHHH
Q psy17788 268 NKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDR---VDLGRQVIQRAVTQKLPPKK-----LKPLYMKWLKLEE 339 (365)
Q Consensus 268 ~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~---~~~Ar~~~eral~~~l~~~~-----~~~~~~~~l~~e~ 339 (365)
+..+++++|...|++++..+|++..+|..++.++...|+ .+.|...|++++...-..+. ...+|...+.++.
T Consensus 153 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (272)
T 3u4t_A 153 YYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT 232 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 556688888888888888888888888888888888877 77788888888873111111 1246666777777
Q ss_pred hcCCHHHHHHHHHHHHHHHHh
Q psy17788 340 QYGDAEAVENVKKEIEQYVRN 360 (365)
Q Consensus 340 ~~G~~~~a~~v~~kA~~~v~~ 360 (365)
..|+.+.|...+++|++.-++
T Consensus 233 ~~~~~~~A~~~~~~al~~~p~ 253 (272)
T 3u4t_A 233 INRDKVKADAAWKNILALDPT 253 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT
T ss_pred HcCCHHHHHHHHHHHHhcCcc
Confidence 788888888888888876543
No 28
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=3.4e-21 Score=170.38 Aligned_cols=220 Identities=10% Similarity=-0.019 Sum_probs=174.3
Q ss_pred HHhc-CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCcc--ccchHHHHHHHHHHHHHh
Q psy17788 88 ELLQ-NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRN--EEDRLNVWTSLLNLEHLY 164 (365)
Q Consensus 88 ~l~~-~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~--~~~~~~~w~~~~~l~~~~ 164 (365)
.+.. ++..+|+..|++++..+ +++.+|..++.++...|++++|..+|++++...|... ......+|..++.++...
T Consensus 14 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 92 (258)
T 3uq3_A 14 KFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKL 92 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHc
Confidence 3344 66668888888888888 7888888888888888888888888888888766210 001157788888888888
Q ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHH
Q psy17788 165 GTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHIL 244 (365)
Q Consensus 165 g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l 244 (365)
|+++.|...|++++...|... ++...|++++|...|++++... |.++.+|..+|.++...|++++|..+|
T Consensus 93 ~~~~~A~~~~~~a~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~ 162 (258)
T 3uq3_A 93 GDLKKTIEYYQKSLTEHRTAD-------ILTKLRNAEKELKKAEAEAYVN---PEKAEEARLEGKEYFTKSDWPNAVKAY 162 (258)
T ss_dssp TCHHHHHHHHHHHHHHCCCHH-------HHHHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCchhH-------HHHHHhHHHHHHHHHHHHHHcC---cchHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 888888888888888877743 4455566788888888888876 778888888888888888888888888
Q ss_pred HHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788 245 QRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ 320 (365)
Q Consensus 245 ~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~ 320 (365)
++++...|.. ..++..+|.++...|++++|...|++++..+|+++.+|..++.++...|+++.|...|++++..
T Consensus 163 ~~a~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 163 TEMIKRAPED--ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCccc--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 8888888875 4567777888888888888888888888888888888888888888888888888888888873
No 29
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.89 E-value=1.3e-21 Score=185.78 Aligned_cols=233 Identities=9% Similarity=-0.008 Sum_probs=210.3
Q ss_pred CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccC-HHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHH
Q psy17788 92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATE-IEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESL 170 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~-~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a 170 (365)
++..+|+..|+++|..+|++..+|..++.++...|+ +++|+..|++||...| .+..+|..++.++...|+++.|
T Consensus 111 g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-----~~~~a~~~~g~~~~~~g~~~eA 185 (382)
T 2h6f_A 111 ERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-----KNYQVWHHRRVLVEWLRDPSQE 185 (382)
T ss_dssp CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCCTTH
T ss_pred CChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHccCHHHH
Confidence 667799999999999999999999999999999997 9999999999999999 7799999999999999999999
Q ss_pred HHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH-cCChHHH-----HHH
Q psy17788 171 QECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLR-LGQKDTA-----RHI 243 (365)
Q Consensus 171 ~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~-~g~~~~A-----~~~ 243 (365)
+..|++++..+|. ..+|..++.++...|++++|+..|+++++.. |.+..+|..+|.++.. .|..++| +..
T Consensus 186 l~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~---P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~ 262 (382)
T 2h6f_A 186 LEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED---VRNNSVWNQRYFVISNTTGYNDRAVLEREVQY 262 (382)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHH
T ss_pred HHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence 9999999999984 5799999999999999999999999999998 9999999999999999 5655888 589
Q ss_pred HHHHHhcCCCcchHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC---------ChHHHHH
Q psy17788 244 LQRGLNNLPPAVHVTLITRFALAENKFG--DASRAQALLEHTLTSYPARVDVWGVYVDMLVKSD---------RVDLGRQ 312 (365)
Q Consensus 244 l~ral~~~p~~~~~~~~~~~a~~~~~~g--~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g---------~~~~Ar~ 312 (365)
|++++...|.+ ..+|..++.++...| ++++|...++++ ...|++..++..+++++.+.| .+++|..
T Consensus 263 ~~~Al~l~P~~--~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~ 339 (382)
T 2h6f_A 263 TLEMIKLVPHN--ESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALE 339 (382)
T ss_dssp HHHHHHHSTTC--HHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHCCCC--HHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 99999999996 557777788888888 689999999998 999999999999999999874 2589999
Q ss_pred HHHHH-HhCCCCCCCcHHHHHHHHHHH
Q psy17788 313 VIQRA-VTQKLPPKKLKPLYMKWLKLE 338 (365)
Q Consensus 313 ~~era-l~~~l~~~~~~~~~~~~l~~e 338 (365)
+|+++ +.. .+.....|...+...
T Consensus 340 ~~~~l~~~~---DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 340 LCEILAKEK---DTIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHTT---CGGGHHHHHHHHHHH
T ss_pred HHHHHHHHh---CchhHHHHHHHHHHH
Confidence 99999 763 345777888776643
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.89 E-value=3.5e-21 Score=176.39 Aligned_cols=237 Identities=11% Similarity=0.036 Sum_probs=211.8
Q ss_pred CHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HHHHHH
Q psy17788 111 NSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-TKVYMN 189 (365)
Q Consensus 111 ~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~~~ 189 (365)
+...|+..+..+...|++++|..+|++++...| ....+|..++.++...|+++.|...|++++...|. ..+|..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 94 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAP-----EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAA 94 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHH
Confidence 446788999999999999999999999999888 67889999999999999999999999999999884 578899
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHH--------------HH-HHHHcCChHHHHHHHHHHHhcCCCc
Q psy17788 190 MMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQC--------------AT-LLLRLGQKDTARHILQRGLNNLPPA 254 (365)
Q Consensus 190 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--------------a~-~~~~~g~~~~A~~~l~ral~~~p~~ 254 (365)
++.++...|++++|...|++++... |.+..++..+ +. ++...|++++|..++++++...|..
T Consensus 95 la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 171 (327)
T 3cv0_A 95 LAVSHTNEHNANAALASLRAWLLSQ---PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPND 171 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTS---TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC---CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 9999999999999999999999987 7777777776 65 5778899999999999999999985
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHH
Q psy17788 255 VHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKW 334 (365)
Q Consensus 255 ~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~ 334 (365)
..++..+|.++...|++++|...|++++..+|++..+|..++.++...|++++|..+|++++.. .+.....|...
T Consensus 172 --~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l 246 (327)
T 3cv0_A 172 --AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDI---NPGYVRVMYNM 246 (327)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred --HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHH
Confidence 5677888999999999999999999999999999999999999999999999999999999984 23467788888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHh
Q psy17788 335 LKLEEQYGDAEAVENVKKEIEQYVRN 360 (365)
Q Consensus 335 l~~e~~~G~~~~a~~v~~kA~~~v~~ 360 (365)
+......|+++.|..+++++++..+.
T Consensus 247 ~~~~~~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 247 AVSYSNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 99999999999999999999988765
No 31
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=5.8e-22 Score=193.20 Aligned_cols=256 Identities=10% Similarity=0.071 Sum_probs=219.8
Q ss_pred CCCCCChHHHHHHhh-----c--C-------CCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHH
Q psy17788 92 NGEPVSPDGFDRMLL-----G--Q-------PNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSL 157 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~-----~--~-------p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~ 157 (365)
++..+|+..|++++. . + |.+..+|..++.++...|++++|..+|++++...| . ..+|..+
T Consensus 203 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~-----~-~~~~~~l 276 (514)
T 2gw1_A 203 ESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP-----R-VNSYIYM 276 (514)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC-----C-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc-----c-HHHHHHH
Confidence 444578888888887 5 3 45567899999999999999999999999999877 5 7888899
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCC
Q psy17788 158 LNLEHLYGTKESLQECLHEAVRCND-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQ 236 (365)
Q Consensus 158 ~~l~~~~g~~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~ 236 (365)
+.++...|+++.|...|++++...| +..+|..++.++...|++++|...|++++... |.++.+|..++.++...|+
T Consensus 277 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~ 353 (514)
T 2gw1_A 277 ALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD---PENIFPYIQLACLAYRENK 353 (514)
T ss_dssp HHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC---SSCSHHHHHHHHHTTTTTC
T ss_pred HHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---hhhHHHHHHHHHHHHHcCC
Confidence 9999999999999999999998887 45688888999999999999999999999887 8888999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh------HHHHHHHHHHh---cCCh
Q psy17788 237 KDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVD------VWGVYVDMLVK---SDRV 307 (365)
Q Consensus 237 ~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~------~w~~~~~~~~~---~g~~ 307 (365)
+++|..+|++++...|... .++..+|.++...|++++|...|++++...|++.. +|..++.++.. .|++
T Consensus 354 ~~~A~~~~~~~~~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 431 (514)
T 2gw1_A 354 FDDCETLFSEAKRKFPEAP--EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENF 431 (514)
T ss_dssp HHHHHHHHHHHHHHSTTCS--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHH
T ss_pred HHHHHHHHHHHHHHcccCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCH
Confidence 9999999999999888864 46677799999999999999999999998888765 89999999999 9999
Q ss_pred HHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhh
Q psy17788 308 DLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNS 361 (365)
Q Consensus 308 ~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~ 361 (365)
+.|..+|++++.. .+.....|...+.+....|+.+.|...+++|++..+..
T Consensus 432 ~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 482 (514)
T 2gw1_A 432 IEATNLLEKASKL---DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM 482 (514)
T ss_dssp HHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcccc
Confidence 9999999999974 23466788888888888999999999999998865543
No 32
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=2.2e-21 Score=190.57 Aligned_cols=252 Identities=13% Similarity=0.132 Sum_probs=213.8
Q ss_pred CCChHHHHHHhhcCCCCHH-------HHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCH
Q psy17788 95 PVSPDGFDRMLLGQPNNSE-------LWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTK 167 (365)
Q Consensus 95 p~a~~~fe~~l~~~p~~~~-------~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~ 167 (365)
.+|+..|++++..+|++.. +|..++.++...|++++|..+|++++...| . ..+|..++.++...|++
T Consensus 219 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~-----~-~~~~~~l~~~~~~~~~~ 292 (537)
T 3fp2_A 219 TKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHP-----T-PNSYIFLALTLADKENS 292 (537)
T ss_dssp HHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-----C-HHHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC-----C-chHHHHHHHHHHHhcCH
Confidence 4577889999999999866 466666778888999999999999999877 5 68888899999899999
Q ss_pred HHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy17788 168 ESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQR 246 (365)
Q Consensus 168 ~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~r 246 (365)
+.|...|++++..+|. ..+|..++.++...|++++|+..|++++... |.++.+|..+|.++...|++++|..+|++
T Consensus 293 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 369 (537)
T 3fp2_A 293 QEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN---PENVYPYIQLACLLYKQGKFTESEAFFNE 369 (537)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999998875 5688999999999999999999999999988 88899999999999999999999999999
Q ss_pred HHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH------HHHHHHHHHhc----------CChHHH
Q psy17788 247 GLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDV------WGVYVDMLVKS----------DRVDLG 310 (365)
Q Consensus 247 al~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~------w~~~~~~~~~~----------g~~~~A 310 (365)
++...|... .++..+|.++...|++++|...|++++...|++... +...+.++... |++++|
T Consensus 370 ~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A 447 (537)
T 3fp2_A 370 TKLKFPTLP--EVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAA 447 (537)
T ss_dssp HHHHCTTCT--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHH
T ss_pred HHHhCCCCh--HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHH
Confidence 999998864 466777999999999999999999999988876554 34456777777 999999
Q ss_pred HHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q psy17788 311 RQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRN 360 (365)
Q Consensus 311 r~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~ 360 (365)
..+|++++.. .+....+|...+..+...|+.+.|...+++|++.-++
T Consensus 448 ~~~~~~a~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 448 IKLLTKACEL---DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp HHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 9999999984 3346688888889889999999999999999887543
No 33
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.8e-20 Score=165.78 Aligned_cols=229 Identities=10% Similarity=0.030 Sum_probs=206.1
Q ss_pred CCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC------
Q psy17788 110 NNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE------ 183 (365)
Q Consensus 110 ~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~------ 183 (365)
.....|...+..+...|++++|..+|++++... . ...+|..++.++...|+++.|...|++++...|.
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 76 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-K-----DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK 76 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-C-----CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-c-----cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH
Confidence 346789999999999999999999999999965 2 3588999999999999999999999999998764
Q ss_pred --HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHH
Q psy17788 184 --TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLIT 261 (365)
Q Consensus 184 --~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~ 261 (365)
..+|..++.++...|++++|...|++++... +. +..+...|++++|...+++++...|.. ..++.
T Consensus 77 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~ 143 (258)
T 3uq3_A 77 VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH---RT--------ADILTKLRNAEKELKKAEAEAYVNPEK--AEEAR 143 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CC--------HHHHHHHHHHHHHHHHHHHHHHCCHHH--HHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC---ch--------hHHHHHHhHHHHHHHHHHHHHHcCcch--HHHHH
Confidence 4788999999999999999999999999986 44 456677788999999999999998874 66788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhc
Q psy17788 262 RFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQY 341 (365)
Q Consensus 262 ~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~ 341 (365)
.+|.++...|+++.|...|++++..+|.++.+|..++.++...|++++|..+|++++.. .+.....|...+......
T Consensus 144 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~ 220 (258)
T 3uq3_A 144 LEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK---DPNFVRAYIRKATAQIAV 220 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999984 344678888889999999
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q psy17788 342 GDAEAVENVKKEIEQYVRN 360 (365)
Q Consensus 342 G~~~~a~~v~~kA~~~v~~ 360 (365)
|+.+.|...+++|++..++
T Consensus 221 g~~~~A~~~~~~a~~~~~~ 239 (258)
T 3uq3_A 221 KEYASALETLDAARTKDAE 239 (258)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhChh
Confidence 9999999999999998844
No 34
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.88 E-value=6.5e-21 Score=186.97 Aligned_cols=252 Identities=13% Similarity=0.125 Sum_probs=199.7
Q ss_pred CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccC-HHHHHHHHHHHHhhccCccccchHHHHHHHHHHHH----HhCC
Q psy17788 92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATE-IEKARSIARRALTVINIRNEEDRLNVWTSLLNLEH----LYGT 166 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~-~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~----~~g~ 166 (365)
+....+..+|+|+|...| +..+|..|+.+..+.++ .+..+.+|++|+.+.... .....+|..|+.++. ..|+
T Consensus 28 ~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d--~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENY--WDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTC--TTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCC--cccHHHHHHHHHHHHhchhhhHH
Confidence 444577899999999888 99999999999988774 567899999999965321 145799999999965 3467
Q ss_pred HHHHHHHHHHHHHcCCC--HH------------------------------------------------HHHHHHHHHHH
Q psy17788 167 KESLQECLHEAVRCNDE--TK------------------------------------------------VYMNMMEIYAA 196 (365)
Q Consensus 167 ~~~a~~v~~ral~~~~~--~~------------------------------------------------~~~~l~~~~~~ 196 (365)
.+.++.+|++||..... .. +|..++++...
T Consensus 105 ~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~ 184 (493)
T 2uy1_A 105 IEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEME 184 (493)
T ss_dssp HHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhc
Confidence 88999999999985221 11 34444554332
Q ss_pred hC--C-----HHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchH------------
Q psy17788 197 SA--Q-----IRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHV------------ 257 (365)
Q Consensus 197 ~g--~-----~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~------------ 257 (365)
.+ - .+++..+|++++..+ |.++.+|+.|+.++...|+++.|+.+|+||+.. |.+..+
T Consensus 185 ~~~~~~~~~~~~Rv~~~ye~al~~~---p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~ 260 (493)
T 2uy1_A 185 NGMKLGGRPHESRMHFIHNYILDSF---YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEA 260 (493)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHHHT---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTH
T ss_pred CCccCcchhhHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhH
Confidence 21 1 356788999999998 999999999999999999999999999999999 876421
Q ss_pred --------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC-ChHHH
Q psy17788 258 --------------------------TLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSD-RVDLG 310 (365)
Q Consensus 258 --------------------------~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g-~~~~A 310 (365)
.+|..++.++.+.|..++|+.+|+++ ...+....+|..++.++...| ++++|
T Consensus 261 ~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~a 339 (493)
T 2uy1_A 261 VYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATP 339 (493)
T ss_dssp HHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHH
T ss_pred HHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHH
Confidence 34566677777788899999999999 433345688998999888776 69999
Q ss_pred HHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy17788 311 RQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEI 354 (365)
Q Consensus 311 r~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA 354 (365)
|.+|++++.. + ++...+|..|++|+...|+.+.++.+++++
T Consensus 340 r~ife~al~~-~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 340 YNIFSSGLLK-H--PDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHH-C--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHH-C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999983 3 346788999999999999999999998886
No 35
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.88 E-value=6.2e-21 Score=167.56 Aligned_cols=214 Identities=13% Similarity=0.100 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HHHHHHH
Q psy17788 112 SELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-TKVYMNM 190 (365)
Q Consensus 112 ~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~~~l 190 (365)
+..|+..+..+...|++++|..+|++++...| ....+|..++.++...|+++.|...|++++...|. ..++..+
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 97 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-----EDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGA 97 (243)
T ss_dssp -------------------CCTTHHHHHTTCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHH
Confidence 34555566666666666666666666666555 44556666666666666666666666666666553 3455666
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHc
Q psy17788 191 MEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKF 270 (365)
Q Consensus 191 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~ 270 (365)
+.++...|++++|..+|+++++.. |.++.+|..++.++...|++++|..+|++++...|.. ..++..+|.++...
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 172 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRAG---MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND--TEARFQFGMCLANE 172 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHT---CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc--HHHHHHHHHHHHHc
Confidence 666666666666666666666665 6666666666666666666666666666666666653 34555556666666
Q ss_pred CCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHH
Q psy17788 271 GDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLE 338 (365)
Q Consensus 271 g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e 338 (365)
|+++.|...|++++...|.+..+|..++.++...|++++|..+|++++.. .+.....+..+..+.
T Consensus 173 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 173 GMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI---QPDHMLALHAKKLLG 237 (243)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH---CTTCHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc---CcchHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666653 223444444444443
No 36
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.87 E-value=5.5e-21 Score=171.15 Aligned_cols=242 Identities=7% Similarity=-0.016 Sum_probs=207.3
Q ss_pred HhcCCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHH
Q psy17788 89 LLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKE 168 (365)
Q Consensus 89 l~~~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~ 168 (365)
+..++..+|+..|++++..+|++..+|..++.++...|++++|...|++++. .|.. ..-...+|..++.++...|+++
T Consensus 14 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~-~~~~~~~~~~lg~~~~~~~~~~ 91 (272)
T 3u4t_A 14 FKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNA-TKAKSADFEYYGKILMKKGQDS 91 (272)
T ss_dssp HTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCT-TTCCHHHHHHHHHHHHHTTCHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCc-hhHHHHHHHHHHHHHHHcccHH
Confidence 3336677999999999999999999999999999999999999999999999 5521 1123566999999999999999
Q ss_pred HHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy17788 169 SLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRG 247 (365)
Q Consensus 169 ~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ra 247 (365)
.|+..|++++..+|. ..+|..++.+|...|++++|+..|+++++.. |.++.+|..+|...+..+++++|..+|+++
T Consensus 92 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 168 (272)
T 3u4t_A 92 LAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT---TTDPKVFYELGQAYYYNKEYVKADSSFVKV 168 (272)
T ss_dssp HHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999885 4789999999999999999999999999987 999999999996666677999999999999
Q ss_pred HhcCCCcchHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhC---CCC-----hhHHHHHHHHHHhcCChHHHHHHHHH
Q psy17788 248 LNNLPPAVHVTLITRFALAENKFGD---ASRAQALLEHTLTSY---PAR-----VDVWGVYVDMLVKSDRVDLGRQVIQR 316 (365)
Q Consensus 248 l~~~p~~~~~~~~~~~a~~~~~~g~---~e~A~~~fe~~l~~~---P~~-----~~~w~~~~~~~~~~g~~~~Ar~~~er 316 (365)
+...|.. ...+...|.++...|+ ++.|...|++++... |.. ..+|..++.++...|++++|+.+|++
T Consensus 169 ~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 246 (272)
T 3u4t_A 169 LELKPNI--YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKN 246 (272)
T ss_dssp HHHSTTC--HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhCccc--hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999986 5677778999999998 889999999999876 542 36888999999999999999999999
Q ss_pred HHhCCCCCCCcHHHHHHHHHHHHh
Q psy17788 317 AVTQKLPPKKLKPLYMKWLKLEEQ 340 (365)
Q Consensus 317 al~~~l~~~~~~~~~~~~l~~e~~ 340 (365)
++.. .+.+...+.....+...
T Consensus 247 al~~---~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 247 ILAL---DPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp HHHH---CTTCHHHHHHHC-----
T ss_pred HHhc---CccHHHHHHHhhhhhcc
Confidence 9985 34567777776665443
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.87 E-value=1.7e-20 Score=164.00 Aligned_cols=198 Identities=14% Similarity=0.103 Sum_probs=170.3
Q ss_pred chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHH
Q psy17788 149 DRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQC 227 (365)
Q Consensus 149 ~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 227 (365)
.+..+|..++.++...|+++.|+..|++++..+|. ..+|..++.++.+.|++++|+..|+++++.. |.++.+|..+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~l 79 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART---PRYLGGYMVL 79 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCcHHHHHHH
Confidence 44678999999999999999999999999999985 5788999999999999999999999999998 9999999999
Q ss_pred HHHHHHc-----------CChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHH
Q psy17788 228 ATLLLRL-----------GQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGV 296 (365)
Q Consensus 228 a~~~~~~-----------g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~ 296 (365)
|.++... |++++|...|++++...|.+ ..++..+|.++...|++++|+..|++++..+ +++.+|..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY--APLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHH
Confidence 9999999 99999999999999999995 5677888999999999999999999999999 99999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy17788 297 YVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIE 355 (365)
Q Consensus 297 ~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~ 355 (365)
++.++...|++++|+..|++++.. .|....++..++.+....|+.+.|...++++-
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999984 34567888888999899999999988887763
No 38
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.87 E-value=3.8e-20 Score=162.50 Aligned_cols=204 Identities=9% Similarity=0.082 Sum_probs=183.3
Q ss_pred CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788 92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ 171 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~ 171 (365)
++..+|+..|++++..+|++..+|..++.++...|++++|..+|++++...| ....+|..++.++...|+++.|.
T Consensus 37 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~la~~~~~~~~~~~A~ 111 (243)
T 2q7f_A 37 GDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDS-----SAATAYYGAGNVYVVKEMYKEAK 111 (243)
T ss_dssp -----CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----cchHHHHHHHHHHHHhccHHHHH
Confidence 7777999999999999999999999999999999999999999999999888 66899999999999999999999
Q ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy17788 172 ECLHEAVRCND-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNN 250 (365)
Q Consensus 172 ~v~~ral~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~ 250 (365)
..|++++...| +..++..++.++...|++++|...|+++++.. |.++.+|..+|.++...|++++|..+|++++..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 188 (243)
T 2q7f_A 112 DMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN---ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ 188 (243)
T ss_dssp HHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999987 56788999999999999999999999999998 899999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC
Q psy17788 251 LPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSD 305 (365)
Q Consensus 251 ~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g 305 (365)
.|.. ..++..+|.++...|++++|...|++++..+|++..+|..++.+....|
T Consensus 189 ~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 189 DPGH--ADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp CTTC--HHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred Cccc--HHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 9985 5677888999999999999999999999999999999988877655443
No 39
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.87 E-value=5.1e-20 Score=163.08 Aligned_cols=204 Identities=9% Similarity=0.011 Sum_probs=165.6
Q ss_pred cCCCC-HHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CH
Q psy17788 107 GQPNN-SELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND-ET 184 (365)
Q Consensus 107 ~~p~~-~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~-~~ 184 (365)
.+|.+ +.+|+.++..+...|++++|..+|++++...| ....+|..++.++...|+++.|...|++++...| ..
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 105 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-----SSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNA 105 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-----ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH
Confidence 35554 67888888888888888888888888888776 5567888888888888888888888888888776 45
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH--HhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHH
Q psy17788 185 KVYMNMMEIYAASAQIRDLESTVKLLLK--KAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITR 262 (365)
Q Consensus 185 ~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~ 262 (365)
.+|..++.+|...|++++|+.+|++++. .. |.++.+|..+|.++...|++++|..+|++++...|.. ..++..
T Consensus 106 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~ 180 (252)
T 2ho1_A 106 RVLNNYGGFLYEQKRYEEAYQRLLEASQDTLY---PERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ--PSVALE 180 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTC---TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC--HHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhCccC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc--HHHHHH
Confidence 6777888888888888888888888887 44 7778888888888888888888888888888888774 556677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788 263 FALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ 320 (365)
Q Consensus 263 ~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~ 320 (365)
+|.++...|++++|..+|++++...|.+..+|..++.++...|+++.|+.+|++++..
T Consensus 181 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 181 MADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 7888888888888888888888888888888888888888888888888888888873
No 40
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.87 E-value=1.4e-19 Score=156.64 Aligned_cols=205 Identities=11% Similarity=0.044 Sum_probs=182.8
Q ss_pred cCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HH
Q psy17788 107 GQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-TK 185 (365)
Q Consensus 107 ~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~ 185 (365)
.+|+++.+|..++..+...|++++|+.+|++++...| ....+|..++.++...|+++.|..+|++++...|. ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 77 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-----KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAE 77 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-----cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH
Confidence 4688889999999999999999999999999999888 56789999999999999999999999999998874 56
Q ss_pred HHHHHHHHHHHh-CCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHH
Q psy17788 186 VYMNMMEIYAAS-AQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFA 264 (365)
Q Consensus 186 ~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a 264 (365)
+|..++.++... |++++|..+|++++. .+..+.+..+|..+|.++...|++++|..+|++++...|.. ..++..+|
T Consensus 78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la 154 (225)
T 2vq2_A 78 INNNYGWFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF--PPAFKELA 154 (225)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--chHHHHHH
Confidence 888899999999 999999999999998 22226778999999999999999999999999999998885 56778889
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788 265 LAENKFGDASRAQALLEHTLTSYP-ARVDVWGVYVDMLVKSDRVDLGRQVIQRAVT 319 (365)
Q Consensus 265 ~~~~~~g~~e~A~~~fe~~l~~~P-~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~ 319 (365)
.++...|++++|..+|++++...| .+...|...+.++...|+.+.+..+++.++.
T Consensus 155 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 155 RTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 999999999999999999999999 8899998889999999999999999999886
No 41
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.86 E-value=1.2e-20 Score=184.39 Aligned_cols=211 Identities=11% Similarity=0.029 Sum_probs=197.5
Q ss_pred ChHHHHHHhhcCCCCHHHHHHHHHHHHcccCH-HHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy17788 97 SPDGFDRMLLGQPNNSELWVKYMAYHLQATEI-EKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLH 175 (365)
Q Consensus 97 a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~-e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ 175 (365)
++..++.++...|.+..+|..++..+...|++ ++|...|+++++..| ....+|..++.++...|+++.|...|+
T Consensus 87 al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-----~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 87 TLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-----ELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34567777888999999999999999999999 999999999999988 678999999999999999999999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHc--------CChH
Q psy17788 176 EAVRCNDETKVYMNMMEIYAAS---------AQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRL--------GQKD 238 (365)
Q Consensus 176 ral~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~--------g~~~ 238 (365)
+++..+|...+|..++.+|... |++++|+..|+++++.. |.++.+|..+|.++... |+++
T Consensus 162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD---VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9999999988999999999999 99999999999999998 99999999999999999 9999
Q ss_pred HHHHHHHHHHhcCC---CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q psy17788 239 TARHILQRGLNNLP---PAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQ 315 (365)
Q Consensus 239 ~A~~~l~ral~~~p---~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~e 315 (365)
+|...|++++...| .. ..++..+|.++...|++++|...|++++..+|++..+|..++.++...|++++|...+.
T Consensus 239 ~A~~~~~~al~~~p~~~~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSN--PDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCcccC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999998 54 67888999999999999999999999999999999999999999999999998887665
Q ss_pred HH
Q psy17788 316 RA 317 (365)
Q Consensus 316 ra 317 (365)
++
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 43
No 42
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.86 E-value=4.2e-20 Score=174.35 Aligned_cols=275 Identities=9% Similarity=0.007 Sum_probs=227.5
Q ss_pred Hhc-CCCCCChHHHHHHhhcCCCCH----HHHHHHHHHHHcccCHHHHHHHHHHHHhhccCc-cccchHHHHHHHHHHHH
Q psy17788 89 LLQ-NGEPVSPDGFDRMLLGQPNNS----ELWVKYMAYHLQATEIEKARSIARRALTVINIR-NEEDRLNVWTSLLNLEH 162 (365)
Q Consensus 89 l~~-~~~p~a~~~fe~~l~~~p~~~----~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~-~~~~~~~~w~~~~~l~~ 162 (365)
+.. ++..+|+..|++++...|+++ .+|..++.++...|++++|...|++++...+.. .......+|..++.++.
T Consensus 19 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 98 (406)
T 3sf4_A 19 LCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK 98 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 444 777799999999999999984 689999999999999999999999999863211 11245678888999999
Q ss_pred HhCCHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHhCC--------------------HHHHHHHHHHHHHHhc
Q psy17788 163 LYGTKESLQECLHEAVRCNDE-------TKVYMNMMEIYAASAQ--------------------IRDLESTVKLLLKKAG 215 (365)
Q Consensus 163 ~~g~~~~a~~v~~ral~~~~~-------~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~al~~~~ 215 (365)
..|+++.|...|++++...+. ..++..++.+|...|+ +++|...|++++....
T Consensus 99 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~ 178 (406)
T 3sf4_A 99 VLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVT 178 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987642 3378889999999999 9999999999988642
Q ss_pred CC---CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17788 216 QT---HSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV----HVTLITRFALAENKFGDASRAQALLEHTLTSYP 288 (365)
Q Consensus 216 ~~---~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~----~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P 288 (365)
.. +....++..+|.++...|++++|..+|++++...|... ...++..+|.++...|++++|..+|++++...|
T Consensus 179 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 258 (406)
T 3sf4_A 179 ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR 258 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 11 34466899999999999999999999999998755432 244778889999999999999999999998877
Q ss_pred CC------hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC---CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q psy17788 289 AR------VDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLP---PKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVR 359 (365)
Q Consensus 289 ~~------~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~---~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~ 359 (365)
.. ..++..++.++...|++++|..+|++++..... +.....++...+.+....|+++.|...+++|++..+
T Consensus 259 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 338 (406)
T 3sf4_A 259 QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 338 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 65 678899999999999999999999999973111 111245777888888899999999999999999977
Q ss_pred hhhc
Q psy17788 360 NSKN 363 (365)
Q Consensus 360 ~~~~ 363 (365)
..++
T Consensus 339 ~~~~ 342 (406)
T 3sf4_A 339 EVGD 342 (406)
T ss_dssp HTTC
T ss_pred HhcC
Confidence 6543
No 43
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.86 E-value=4.3e-20 Score=168.83 Aligned_cols=272 Identities=9% Similarity=0.007 Sum_probs=220.6
Q ss_pred cCCCCCChHHHHHHhhcCCCC----HHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCc-cccchHHHHHHHHHHHHHhC
Q psy17788 91 QNGEPVSPDGFDRMLLGQPNN----SELWVKYMAYHLQATEIEKARSIARRALTVINIR-NEEDRLNVWTSLLNLEHLYG 165 (365)
Q Consensus 91 ~~~~p~a~~~fe~~l~~~p~~----~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~-~~~~~~~~w~~~~~l~~~~g 165 (365)
.++..+|+..|++++..+|++ ..+|..++.++...|++++|..++++++...+.. .......+|..++.++...|
T Consensus 18 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 97 (338)
T 3ro2_A 18 SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG 97 (338)
T ss_dssp TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred hccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHcc
Confidence 377779999999999999998 4788899999999999999999999999863211 11144678889999999999
Q ss_pred CHHHHHHHHHHHHHcCC---C----HHHHHHHHHHHHHhCC--------------------HHHHHHHHHHHHHHhcC--
Q psy17788 166 TKESLQECLHEAVRCND---E----TKVYMNMMEIYAASAQ--------------------IRDLESTVKLLLKKAGQ-- 216 (365)
Q Consensus 166 ~~~~a~~v~~ral~~~~---~----~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~al~~~~~-- 216 (365)
+++.|...|++++...+ + ..++..++.+|...|+ +++|...|++++.....
T Consensus 98 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~ 177 (338)
T 3ro2_A 98 NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALG 177 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999988753 2 2377888999999999 99999999999876311
Q ss_pred -CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-
Q psy17788 217 -THSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV----HVTLITRFALAENKFGDASRAQALLEHTLTSYPAR- 290 (365)
Q Consensus 217 -~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~----~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~- 290 (365)
.+....++..++.++...|++++|..++++++...+... ...++..+|.++...|++++|..+|++++...|..
T Consensus 178 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (338)
T 3ro2_A 178 DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 257 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc
Confidence 133456899999999999999999999999998754422 24477888999999999999999999999887665
Q ss_pred -----hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC---CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhh
Q psy17788 291 -----VDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKL---PPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNSK 362 (365)
Q Consensus 291 -----~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l---~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~~ 362 (365)
..++..++.++...|++++|..+|++++.... .+.....++...+..+...|+.+.|...+++|++..++.+
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 337 (338)
T 3ro2_A 258 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVG 337 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-----
T ss_pred chhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhc
Confidence 66788999999999999999999999987310 0112244677888888899999999999999999877654
No 44
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.85 E-value=1.3e-19 Score=165.84 Aligned_cols=251 Identities=12% Similarity=0.074 Sum_probs=160.6
Q ss_pred HhcCCCCCChHHHHHHhhcCCCCH-HHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCH
Q psy17788 89 LLQNGEPVSPDGFDRMLLGQPNNS-ELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTK 167 (365)
Q Consensus 89 l~~~~~p~a~~~fe~~l~~~p~~~-~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~ 167 (365)
+-.|+...++..++++...+|++. ...+.++..++..|+++.|+..++.. .| ........++.++...|+.
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~-----~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SA-----PELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SC-----HHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CC-----hhHHHHHHHHHHHcCCCcH
Confidence 333555566666666666666653 46666667777777777777655431 22 2344555566666666677
Q ss_pred HHHHHHHHHHHHc--CC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHH
Q psy17788 168 ESLQECLHEAVRC--ND-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHIL 244 (365)
Q Consensus 168 ~~a~~v~~ral~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l 244 (365)
+.|+..+++++.. +| +..++..++.++...|++++|+.+|++ |.++.++..++.++...|++++|...|
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 7777777777654 34 345666667777777777777777654 456677777777777777777777777
Q ss_pred HHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q psy17788 245 QRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPP 324 (365)
Q Consensus 245 ~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~ 324 (365)
++++...|......+...+..+....|++++|..+|++++..+|.++.+|..++.++...|++++|...|++++.. .
T Consensus 154 ~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~---~ 230 (291)
T 3mkr_A 154 KKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK---D 230 (291)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---C
T ss_pred HHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---C
Confidence 7777776664333332333344445567777777777777777777777777777777777777777777777763 2
Q ss_pred CCcHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHHH
Q psy17788 325 KKLKPLYMKWLKLEEQYGDAEA-VENVKKEIEQYV 358 (365)
Q Consensus 325 ~~~~~~~~~~l~~e~~~G~~~~-a~~v~~kA~~~v 358 (365)
+.....|..++.+....|.... +..+++++++.-
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 3455566666666666666643 556666666543
No 45
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.85 E-value=1.3e-19 Score=153.26 Aligned_cols=164 Identities=12% Similarity=0.158 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q psy17788 151 LNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCAT 229 (365)
Q Consensus 151 ~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~ 229 (365)
..+|+.++.++...|+++.|+..|+++++.+|+ ..+|..++.+|...|++++|...+.+++... +.++.++..++.
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~ 81 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD---TTSAEAYYILGS 81 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---chhHHHHHHHHH
Confidence 345555555555555555555555555555542 3345555555555555555555555555555 555555555555
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHH
Q psy17788 230 LLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDL 309 (365)
Q Consensus 230 ~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~ 309 (365)
++...++++.|...+.+++...|.+ ..++..+|.++...|++++|...|++++..+|.++.+|..+|.++...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~--~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVY--ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccc--hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 5555555555555555555555553 33444455555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHh
Q psy17788 310 GRQVIQRAVT 319 (365)
Q Consensus 310 Ar~~~eral~ 319 (365)
|...|++|+.
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555554
No 46
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.85 E-value=5.3e-20 Score=174.81 Aligned_cols=276 Identities=11% Similarity=0.012 Sum_probs=227.2
Q ss_pred HHhc-CCCCCChHHHHHHhhcCCCCH----HHHHHHHHHHHcccCHHHHHHHHHHHHhhccC-ccccchHHHHHHHHHHH
Q psy17788 88 ELLQ-NGEPVSPDGFDRMLLGQPNNS----ELWVKYMAYHLQATEIEKARSIARRALTVINI-RNEEDRLNVWTSLLNLE 161 (365)
Q Consensus 88 ~l~~-~~~p~a~~~fe~~l~~~p~~~----~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~-~~~~~~~~~w~~~~~l~ 161 (365)
.+.. ++..+|+..|++++..+|++. .+|..++.++...|++++|...|++++..... ........+|..++.++
T Consensus 57 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 136 (411)
T 4a1s_A 57 RLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTL 136 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHH
Confidence 3444 777799999999999999987 58999999999999999999999999986311 00115678899999999
Q ss_pred HHhCCHHHHHHHHHHHHHcCC-------CHHHHHHHHHHHHHhCC-----------------HHHHHHHHHHHHHHhc--
Q psy17788 162 HLYGTKESLQECLHEAVRCND-------ETKVYMNMMEIYAASAQ-----------------IRDLESTVKLLLKKAG-- 215 (365)
Q Consensus 162 ~~~g~~~~a~~v~~ral~~~~-------~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~al~~~~-- 215 (365)
...|+++.|...|++++...+ ...++..++.+|...|+ +++|+..|++++....
T Consensus 137 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~ 216 (411)
T 4a1s_A 137 KVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDL 216 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999998732 23477889999999999 9999999999987641
Q ss_pred -CCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy17788 216 -QTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVH----VTLITRFALAENKFGDASRAQALLEHTLTSYPAR 290 (365)
Q Consensus 216 -~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~----~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~ 290 (365)
..+....++..+|.++...|++++|..+|++++...|.... ..++..+|.++...|++++|..+|++++...|..
T Consensus 217 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 296 (411)
T 4a1s_A 217 GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL 296 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc
Confidence 11334568999999999999999999999999988654222 3477888999999999999999999999987754
Q ss_pred ------hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC---CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhh
Q psy17788 291 ------VDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLP---PKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNS 361 (365)
Q Consensus 291 ------~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~---~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~ 361 (365)
..++..++.++...|++++|..+|++++...-. +.....++...+.++...|+.+.|...+++|++..++.
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 297 GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence 678899999999999999999999999973100 11223477778888899999999999999999987765
Q ss_pred hc
Q psy17788 362 KN 363 (365)
Q Consensus 362 ~~ 363 (365)
++
T Consensus 377 ~~ 378 (411)
T 4a1s_A 377 XX 378 (411)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 47
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.84 E-value=7.8e-19 Score=148.36 Aligned_cols=174 Identities=10% Similarity=0.096 Sum_probs=157.7
Q ss_pred CCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HHHH
Q psy17788 109 PNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-TKVY 187 (365)
Q Consensus 109 p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~ 187 (365)
.+++.+|+.+|..+...|++++|+..|+++|+..| ++..+|..++.++...|+++.|...+.+++...|. ..++
T Consensus 2 ge~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 76 (184)
T 3vtx_A 2 GETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-----NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAY 76 (184)
T ss_dssp --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHH
T ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHH
Confidence 36788999999999999999999999999999888 77899999999999999999999999999998875 4677
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Q psy17788 188 MNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAE 267 (365)
Q Consensus 188 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~ 267 (365)
..++.++...++++.+...+.+++... |.++.+|..+|.++...|++++|+..|+++++..|.+ ..++..+|.++
T Consensus 77 ~~~~~~~~~~~~~~~a~~~~~~a~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~lg~~~ 151 (184)
T 3vtx_A 77 YILGSANFMIDEKQAAIDALQRAIALN---TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF--IRAYQSIGLAY 151 (184)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC---ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchh--hhHHHHHHHHH
Confidence 888999999999999999999999988 9999999999999999999999999999999999985 66778889999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCChh
Q psy17788 268 NKFGDASRAQALLEHTLTSYPARVD 292 (365)
Q Consensus 268 ~~~g~~e~A~~~fe~~l~~~P~~~~ 292 (365)
.+.|++++|...|+++++.+|+++.
T Consensus 152 ~~~g~~~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 152 EGKGLRDEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhCCccCHH
Confidence 9999999999999999999998643
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.84 E-value=2.2e-18 Score=152.44 Aligned_cols=196 Identities=14% Similarity=0.052 Sum_probs=181.4
Q ss_pred cCCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHH
Q psy17788 91 QNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESL 170 (365)
Q Consensus 91 ~~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a 170 (365)
.++..+|+..|++++..+|++..+|..++.++...|++++|..+|++++...| ....+|..++.++...|+++.|
T Consensus 50 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~la~~~~~~g~~~~A 124 (252)
T 2ho1_A 50 RGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-----RNARVLNNYGGFLYEQKRYEEA 124 (252)
T ss_dssp TTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHH
T ss_pred cCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-----CcHHHHHHHHHHHHHHhHHHHH
Confidence 37777999999999999999999999999999999999999999999999888 5678999999999999999999
Q ss_pred HHHHHHHHH--cCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy17788 171 QECLHEAVR--CNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRG 247 (365)
Q Consensus 171 ~~v~~ral~--~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ra 247 (365)
..+|++++. ..|. ..++..++.++...|++++|...|++++... |.++.+|..++.++...|++++|..+|+++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 201 (252)
T 2ho1_A 125 YQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN---RNQPSVALEMADLLYKEREYVPARQYYDLF 201 (252)
T ss_dssp HHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999998 6664 4678899999999999999999999999998 899999999999999999999999999999
Q ss_pred HhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHH
Q psy17788 248 LNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGV 296 (365)
Q Consensus 248 l~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~ 296 (365)
+...|.. ..++..++.++...|++++|..+|++++..+|++..++..
T Consensus 202 ~~~~~~~--~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 248 (252)
T 2ho1_A 202 AQGGGQN--ARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEF 248 (252)
T ss_dssp HTTSCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred HHhCcCc--HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 9999875 5567788999999999999999999999999999877654
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.84 E-value=8.1e-18 Score=151.29 Aligned_cols=227 Identities=8% Similarity=-0.104 Sum_probs=194.2
Q ss_pred CCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHcCCC
Q psy17788 108 QPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHL----YGTKESLQECLHEAVRCNDE 183 (365)
Q Consensus 108 ~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~----~g~~~~a~~v~~ral~~~~~ 183 (365)
+|+++.+++.++..+...|++++|...|++++. | .....|..++.++.. .++++.|...|++++... +
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~-----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~ 73 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--L-----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-Y 73 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--T-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-C
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--C-----CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-C
Confidence 688899999999999999999999999999998 3 346788889999988 899999999999999875 6
Q ss_pred HHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCcc
Q psy17788 184 TKVYMNMMEIYAA----SAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLR----LGQKDTARHILQRGLNNLPPAV 255 (365)
Q Consensus 184 ~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~----~g~~~~A~~~l~ral~~~p~~~ 255 (365)
..++..++.+|.. .+++++|+..|++++.. .++.++..++.++.. .+++++|..+|++++...+
T Consensus 74 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~--- 145 (273)
T 1ouv_A 74 SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-----KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLND--- 145 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc-----CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCc---
Confidence 7888999999999 99999999999999975 388999999999999 9999999999999998652
Q ss_pred hHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCCc
Q psy17788 256 HVTLITRFALAENK----FGDASRAQALLEHTLTSYPARVDVWGVYVDMLVK----SDRVDLGRQVIQRAVTQKLPPKKL 327 (365)
Q Consensus 256 ~~~~~~~~a~~~~~----~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~----~g~~~~Ar~~~eral~~~l~~~~~ 327 (365)
...+..+|.++.. .+++++|..+|++++.. .++.++..++.++.. .+++++|...|++++.. . .
T Consensus 146 -~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~---~ 217 (273)
T 1ouv_A 146 -GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--E---N 217 (273)
T ss_dssp -HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--T---C
T ss_pred -HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC--C---C
Confidence 4566788999888 89999999999999986 457889999999999 99999999999999974 2 2
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHH
Q psy17788 328 KPLYMKWLKLEEQ----YGDAEAVENVKKEIEQYV 358 (365)
Q Consensus 328 ~~~~~~~l~~e~~----~G~~~~a~~v~~kA~~~v 358 (365)
...+.....+... .|+.+.|...+++|++.-
T Consensus 218 ~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 218 GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 5666777777777 889999999999998753
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.83 E-value=3.9e-19 Score=158.94 Aligned_cols=238 Identities=9% Similarity=-0.044 Sum_probs=195.6
Q ss_pred CChHHHHHHhhc----CCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788 96 VSPDGFDRMLLG----QPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ 171 (365)
Q Consensus 96 ~a~~~fe~~l~~----~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~ 171 (365)
+|+..|++++.. +|.++.+|..++..+...|++++|...|++++...| ....+|..++.++...|+++.|.
T Consensus 23 ~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-----~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 23 VILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-----DMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-----CcHHHHHHHHHHHHHccCHHHHH
Confidence 356678888876 356789999999999999999999999999999888 67899999999999999999999
Q ss_pred HHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy17788 172 ECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNN 250 (365)
Q Consensus 172 ~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~ 250 (365)
..|++++..+|. ..+|..++.+|...|++++|...|+++++.. |.+......++ +....|++++|..+|.+++..
T Consensus 98 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---~~~~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 98 EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD---PNDPFRSLWLY-LAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHH-HHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCChHHHHHHH-HHHHhcCHHHHHHHHHHHHhc
Confidence 999999999884 6789999999999999999999999999988 77776555554 446679999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCC
Q psy17788 251 LPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPAR----VDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKK 326 (365)
Q Consensus 251 ~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~----~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~ 326 (365)
.|..... ...+.++...++.+.|...+++++...|.. ..+|..++.++...|++++|..+|++++.. .|..
T Consensus 174 ~~~~~~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~ 248 (275)
T 1xnf_A 174 SDKEQWG---WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN 248 (275)
T ss_dssp SCCCSTH---HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT
T ss_pred CCcchHH---HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh
Confidence 8886443 235677778889999999999999877743 789999999999999999999999999974 3433
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHH
Q psy17788 327 LKPLYMKWLKLEEQYGDAEAVENVK 351 (365)
Q Consensus 327 ~~~~~~~~l~~e~~~G~~~~a~~v~ 351 (365)
. ..+.......|+++.+...+
T Consensus 249 ~----~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 F----VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp C----HHHHHHHHHHHHHHHC----
T ss_pred H----HHHHHHHHHHHHHHhhHHHH
Confidence 2 22233334456666665544
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.83 E-value=5.8e-18 Score=146.32 Aligned_cols=204 Identities=12% Similarity=0.090 Sum_probs=184.3
Q ss_pred chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHH
Q psy17788 149 DRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQC 227 (365)
Q Consensus 149 ~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 227 (365)
....+|..++.++...|+++.|...|++++...|. ..+|..++.++...|++++|..+|++++... |.+..+|..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l 82 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK---PDSAEINNNY 82 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCChHHHHHH
Confidence 56789999999999999999999999999999885 5788999999999999999999999999998 9999999999
Q ss_pred HHHHHHc-CChHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc
Q psy17788 228 ATLLLRL-GQKDTARHILQRGLN--NLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKS 304 (365)
Q Consensus 228 a~~~~~~-g~~~~A~~~l~ral~--~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~ 304 (365)
+.++... |++++|..+|++++. ..|. ...++..+|.++...|++++|...|++++...|.+..+|..++.++...
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPT--PYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLA 160 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSC--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHc
Confidence 9999999 999999999999999 3343 4667888999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q psy17788 305 DRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVR 359 (365)
Q Consensus 305 g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~ 359 (365)
|++++|..+|++++.. .|......|.....++...|+.+.+..+++.+++..+
T Consensus 161 ~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p 213 (225)
T 2vq2_A 161 GQLGDADYYFKKYQSR--VEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFP 213 (225)
T ss_dssp TCHHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence 9999999999999984 3314566777778888899999999999988876543
No 52
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.81 E-value=8e-18 Score=153.85 Aligned_cols=212 Identities=10% Similarity=0.051 Sum_probs=184.2
Q ss_pred CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhh--ccCccccchHHHHHHHHHHHHHhCCHHH
Q psy17788 92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTV--INIRNEEDRLNVWTSLLNLEHLYGTKES 169 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~--~p~~~~~~~~~~w~~~~~l~~~~g~~~~ 169 (365)
++...++..++. .+|.+..++..++.++...++.++|...+++++.. .| ++..+|+.++.++...|+++.
T Consensus 48 g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P-----~~~~~~~~la~~~~~~g~~~~ 119 (291)
T 3mkr_A 48 RKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDV-----TNTTFLLMAASIYFYDQNPDA 119 (291)
T ss_dssp TCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCC-----SCHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCC-----CCHHHHHHHHHHHHHCCCHHH
Confidence 555566666655 26667788889999999999999999999999875 46 678899999999999999999
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHH--HHHHHHHcCChHHHHHHHHHH
Q psy17788 170 LQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQ--CATLLLRLGQKDTARHILQRG 247 (365)
Q Consensus 170 a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~a~~~~~~g~~~~A~~~l~ra 247 (365)
|+.+|++ .++..++..++.+|.+.|++++|...|+++++.. |.+..+.+. ++.++...|++++|..+|+++
T Consensus 120 Al~~l~~----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~---p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~ 192 (291)
T 3mkr_A 120 ALRTLHQ----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD---EDATLTQLATAWVSLAAGGEKLQDAYYIFQEM 192 (291)
T ss_dssp HHHHHTT----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred HHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 9999998 4567899999999999999999999999999987 777644433 335555568999999999999
Q ss_pred HhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHH-HHHHHHHHHhC
Q psy17788 248 LNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDL-GRQVIQRAVTQ 320 (365)
Q Consensus 248 l~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~-Ar~~~eral~~ 320 (365)
+...|.+ ..++..+|.++.+.|++++|...|++++..+|+++++|..++.++...|+.++ +..++++++..
T Consensus 193 l~~~p~~--~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 193 ADKCSPT--LLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHSCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHhCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 9999985 66888899999999999999999999999999999999999999999999976 67999999985
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.81 E-value=5.8e-18 Score=151.27 Aligned_cols=226 Identities=12% Similarity=0.056 Sum_probs=193.4
Q ss_pred HcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHH
Q psy17788 123 LQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIR 201 (365)
Q Consensus 123 ~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~ 201 (365)
...|++++|...|++++...+. .......+|..++.++...|+++.|...|++++...|. ..+|..++.+|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRAL-TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccc-cCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 4568899999999999996321 11256789999999999999999999999999999885 678999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy17788 202 DLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLE 281 (365)
Q Consensus 202 ~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe 281 (365)
+|+..|++++... |.++.+|..+|.++...|++++|..+|++++...|.......+. .+....|+++.|...|+
T Consensus 95 ~A~~~~~~al~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~A~~~~~ 168 (275)
T 1xnf_A 95 AAYEAFDSVLELD---PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWL---YLAEQKLDEKQAKEVLK 168 (275)
T ss_dssp HHHHHHHHHHHHC---TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH---HHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHhcC---ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHH---HHHHHhcCHHHHHHHHH
Confidence 9999999999998 89999999999999999999999999999999999875433332 33466799999999999
Q ss_pred HHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy17788 282 HTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPK---KLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYV 358 (365)
Q Consensus 282 ~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~---~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v 358 (365)
+++...|.+...|. .+.++...++.+.|...|++++.. .+. .....|...+..+...|+.+.|...+++|++.-
T Consensus 169 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 169 QHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATD--NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCS--HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcc--cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 99999999877765 677788888999999999999863 221 125788888999999999999999999998653
No 54
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.81 E-value=2.1e-18 Score=166.84 Aligned_cols=256 Identities=14% Similarity=0.085 Sum_probs=202.9
Q ss_pred CCCCCChHHHHHHhhc--------CCCCHHHHHHHHHHHH--cccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHH
Q psy17788 92 NGEPVSPDGFDRMLLG--------QPNNSELWVKYMAYHL--QATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLE 161 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~~--------~p~~~~~w~~~~~~~~--~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~ 161 (365)
++..+|+..|++++.. .+..+.++...+..++ ..+++++|+.+|++|+...| ++..+|..++.+.
T Consensus 108 g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-----~~~~~~~~~~~~~ 182 (472)
T 4g1t_A 108 GRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-----KNPEFTSGLAIAS 182 (472)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-----TCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHH
Confidence 4555778888888865 3456677777665554 45679999999999999988 6788888888765
Q ss_pred H---HhCCHHHHHHHHHHHHHcCCCH-HHHHHHHHHH----HHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q psy17788 162 H---LYGTKESLQECLHEAVRCNDET-KVYMNMMEIY----AASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLR 233 (365)
Q Consensus 162 ~---~~g~~~~a~~v~~ral~~~~~~-~~~~~l~~~~----~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~ 233 (365)
. ..+..+.|+..|++++..+|.. .++..++..+ ...|++++|..+|++++... |.++.+|..+|.++..
T Consensus 183 ~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~---~~~~~~~~~lg~~~~~ 259 (472)
T 4g1t_A 183 YRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA---PGVTDVLRSAAKFYRR 259 (472)
T ss_dssp HHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC---SSCHHHHHHHHHHHHH
T ss_pred HHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC---ccHHHHHHHHHHHHHH
Confidence 4 4567788999999999999854 4565555444 44578899999999999998 9999999999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHHhCCCChhHH
Q psy17788 234 LGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKF-------------------GDASRAQALLEHTLTSYPARVDVW 294 (365)
Q Consensus 234 ~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~-------------------g~~e~A~~~fe~~l~~~P~~~~~w 294 (365)
.|++++|...|+++++..|.. ..++..+|.++... +.++.|...|++++..+|....+|
T Consensus 260 ~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 337 (472)
T 4g1t_A 260 KDEPDKAIELLKKALEYIPNN--AYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVC 337 (472)
T ss_dssp TTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCH
T ss_pred cCchHHHHHHHHHHHHhCCCh--HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhh
Confidence 999999999999999999996 55667777766432 346789999999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHH
Q psy17788 295 GVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKL-EEQYGDAEAVENVKKEIEQY 357 (365)
Q Consensus 295 ~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~-e~~~G~~~~a~~v~~kA~~~ 357 (365)
..++.++...|++++|..+|++++....++.....++..++.+ +...|+.+.|...+.+|++.
T Consensus 338 ~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 338 SILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999998644333333456666655 34679999999999999864
No 55
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.80 E-value=1.4e-17 Score=145.60 Aligned_cols=213 Identities=10% Similarity=0.025 Sum_probs=165.7
Q ss_pred CCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCH-HH
Q psy17788 108 QPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDET-KV 186 (365)
Q Consensus 108 ~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~-~~ 186 (365)
.|.++..|+..+..+...|++++|...|++++...|. ....+|..++.++...|+++.|+..|++++..+|.. .+
T Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 78 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNN----QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANA 78 (228)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHH
T ss_pred cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCC----CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHH
Confidence 4567789999999999999999999999999997762 234677778889999999999999999999999865 58
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcH-------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHH
Q psy17788 187 YMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSV-------NIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTL 259 (365)
Q Consensus 187 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~ 259 (365)
|..++.+|...|++++|+..|+++++.. |.++ .+|..+|.++...|++++|...|++++...|.+....+
T Consensus 79 ~~~l~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 155 (228)
T 4i17_A 79 YIGKSAAYRDMKNNQEYIATLTEGIKAV---PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDA 155 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHH
Confidence 8899999999999999999999999998 8888 66999999999999999999999999999887212567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHH
Q psy17788 260 ITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKL 337 (365)
Q Consensus 260 ~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~ 337 (365)
+..+|.++...| ..+++++....+.....+.. ......|.+++|+.+|++++.+ . |....+......+
T Consensus 156 ~~~l~~~~~~~~-----~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~l--~-p~~~~~~~~l~~i 223 (228)
T 4i17_A 156 LYSLGVLFYNNG-----ADVLRKATPLASSNKEKYAS--EKAKADAAFKKAVDYLGEAVTL--S-PNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHHHH-----HHHHHHHGGGTTTCHHHHHH--HHHHHHHHHHHHHHHHHHHHHH--C-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----HHHHHHHHhcccCCHHHHHH--HHHHHHHHHHHHHHHHHHHhhc--C-CCCHHHHHHHHHH
Confidence 778888886544 45566666666555443322 2233455677888888888874 2 3345555554444
No 56
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.80 E-value=1.9e-18 Score=156.92 Aligned_cols=250 Identities=14% Similarity=0.092 Sum_probs=191.7
Q ss_pred cCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCc---cccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--
Q psy17788 107 GQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIR---NEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCN-- 181 (365)
Q Consensus 107 ~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~---~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~-- 181 (365)
.+|....+|..++..+...|++++|..+|++++...... .......+|..++.++...|+++.|...|++++...
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 357788999999999999999999999999999952110 011567889999999999999999999999999873
Q ss_pred ------C-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh-----cCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy17788 182 ------D-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKA-----GQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLN 249 (365)
Q Consensus 182 ------~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~ 249 (365)
+ ...++..++.+|...|++++|..+|++++... +..+....++..+|.++...|++++|..+|++++.
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 23477889999999999999999999999874 22355678899999999999999999999999998
Q ss_pred cC-----C-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------CCChhHHHHHHHH------HHhcCChH
Q psy17788 250 NL-----P-PAVHVTLITRFALAENKFGDASRAQALLEHTLTSY---------PARVDVWGVYVDM------LVKSDRVD 308 (365)
Q Consensus 250 ~~-----p-~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~---------P~~~~~w~~~~~~------~~~~g~~~ 308 (365)
.. + ......++..+|.++...|++++|..+|++++... |....+|.....+ +...+.+.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (311)
T 3nf1_A 182 IYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFG 261 (311)
T ss_dssp HHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHH
Confidence 71 1 22246678889999999999999999999999753 3334444444433 34456777
Q ss_pred HHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q psy17788 309 LGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVR 359 (365)
Q Consensus 309 ~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~ 359 (365)
.+...|++++. ..+....+|...+..+...|+++.|..++++|++..+
T Consensus 262 ~a~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 262 EYGGWYKACKV---DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp CCC------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcCC---CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 77888888876 2345677888899999999999999999999998754
No 57
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.80 E-value=1.2e-17 Score=161.48 Aligned_cols=258 Identities=8% Similarity=0.021 Sum_probs=207.7
Q ss_pred CCCCCChHHHHHHhhc---------CCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCc---cccchHHHHHHHHH
Q psy17788 92 NGEPVSPDGFDRMLLG---------QPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIR---NEEDRLNVWTSLLN 159 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~~---------~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~---~~~~~~~~w~~~~~ 159 (365)
|+..+|+..|++++.. +|.....|..++.+|...|++++|...|++++...+.. ...+...++...+.
T Consensus 65 G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~ 144 (472)
T 4g1t_A 65 GQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGW 144 (472)
T ss_dssp TCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHH
Confidence 6666899999999864 68888999999999999999999999999999854421 11133455544443
Q ss_pred HHH--HhCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHH---HhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q psy17788 160 LEH--LYGTKESLQECLHEAVRCNDE-TKVYMNMMEIYA---ASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLR 233 (365)
Q Consensus 160 l~~--~~g~~~~a~~v~~ral~~~~~-~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~ 233 (365)
... ..++++.|+..|++++..+|+ ..++..++.++. ..++.++|++.|+++++.. |.++.++..++..+..
T Consensus 145 ~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~---p~~~~~~~~l~~~~~~ 221 (472)
T 4g1t_A 145 TRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN---PDNQYLKVLLALKLHK 221 (472)
T ss_dssp HHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC---SSCHHHHHHHHHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC---CcchHHHHHHHHHHHH
Confidence 333 345789999999999999985 456777776644 4577889999999999998 9999999888877665
Q ss_pred c----CChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc-----
Q psy17788 234 L----GQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKS----- 304 (365)
Q Consensus 234 ~----g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~----- 304 (365)
. |++++|..+|++++...|.. ..++..+|.++...|++++|...|++++..+|++..+|..++.++...
T Consensus 222 ~~~~~~~~~~a~~~~~~al~~~~~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~ 299 (472)
T 4g1t_A 222 MREEGEEEGEGEKLVEEALEKAPGV--TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVM 299 (472)
T ss_dssp CC------CHHHHHHHHHHHHCSSC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHhCccH--HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhh
Confidence 4 67889999999999999985 567788899999999999999999999999999999999999887542
Q ss_pred --------------CChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy17788 305 --------------DRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQY 357 (365)
Q Consensus 305 --------------g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~ 357 (365)
+..+.|...|++++.. . +.....|...+......|+++.|...+++|++.
T Consensus 300 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 300 NLRENGMYGKRKLLELIGHAVAHLKKADEA--N-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HC------CHHHHHHHHHHHHHHHHHHHHH--C-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--C-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 3467888999999984 2 334456777888888999999999999999863
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.79 E-value=6.1e-18 Score=160.55 Aligned_cols=253 Identities=9% Similarity=-0.047 Sum_probs=208.2
Q ss_pred CCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC------C
Q psy17788 109 PNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCN------D 182 (365)
Q Consensus 109 p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~------~ 182 (365)
|.....+...+..+...|++++|+.+|++++...|.. ......+|..++.++...|+++.|...|++++... +
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 123 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTED-LRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL 123 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccC-hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCch
Confidence 4455677889999999999999999999999977631 11123688899999999999999999999998872 2
Q ss_pred -CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcC---CCCcHHHHHHHHHHHHHcCC-----------------hHHHH
Q psy17788 183 -ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQ---THSSVNIYLQCATLLLRLGQ-----------------KDTAR 241 (365)
Q Consensus 183 -~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~a~~~~~~g~-----------------~~~A~ 241 (365)
...++..++.+|...|++++|...|++++..... .+....++..+|.++...|+ +++|.
T Consensus 124 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~ 203 (411)
T 4a1s_A 124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAV 203 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHH
Confidence 2357888999999999999999999999987411 14567799999999999999 99999
Q ss_pred HHHHHHHhcCCC----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh------HHHHHHHHHHhcCChHHHH
Q psy17788 242 HILQRGLNNLPP----AVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVD------VWGVYVDMLVKSDRVDLGR 311 (365)
Q Consensus 242 ~~l~ral~~~p~----~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~------~w~~~~~~~~~~g~~~~Ar 311 (365)
.+|++++...+. .....++..+|.++...|++++|..+|++++...|...+ ++..++.++...|++++|.
T Consensus 204 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 283 (411)
T 4a1s_A 204 EFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAA 283 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHH
Confidence 999999876421 123557888899999999999999999999998876555 8999999999999999999
Q ss_pred HHHHHHHhCCCCC---CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhh
Q psy17788 312 QVIQRAVTQKLPP---KKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNSK 362 (365)
Q Consensus 312 ~~~eral~~~l~~---~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~~ 362 (365)
.+|++++...... .....++...+.+....|+++.|...+++|++..+...
T Consensus 284 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 284 EHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 9999999731100 11245778888888999999999999999999877653
No 59
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.79 E-value=4.4e-18 Score=166.15 Aligned_cols=212 Identities=9% Similarity=-0.033 Sum_probs=190.9
Q ss_pred CHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHH
Q psy17788 127 EIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTK-ESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLE 204 (365)
Q Consensus 127 ~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~-~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~ 204 (365)
.++++...+++++...| ....+|..++.++...|++ +.|+..|+++++.+|. ..+|..++.+|...|++++|+
T Consensus 83 ~~~~al~~l~~~~~~~~-----~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~ 157 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQ-----VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAH 157 (474)
T ss_dssp HHHHHHHHHHHHHTTCC-----CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhccCc-----hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 36677778887777666 6789999999999999999 9999999999999986 679999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHHc---------CChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHc-----
Q psy17788 205 STVKLLLKKAGQTHSSVNIYLQCATLLLRL---------GQKDTARHILQRGLNNLPPAVHVTLITRFALAENKF----- 270 (365)
Q Consensus 205 ~~~~~al~~~~~~~~~~~~~~~~a~~~~~~---------g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~----- 270 (365)
..|+++++.. |. ..+|..+|.++... |++++|...|++++...|.+ ..++..+|.++...
T Consensus 158 ~~~~~al~~~---p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~~~~~~ 231 (474)
T 4abn_A 158 TCFSGALTHC---KN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD--GRSWYILGNAYLSLYFNTG 231 (474)
T ss_dssp HHHHHHHTTC---CC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhC---CC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHhhc
Confidence 9999999987 66 79999999999999 99999999999999999996 56778889999998
Q ss_pred ---CCHHHHHHHHHHHHHhCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCH
Q psy17788 271 ---GDASRAQALLEHTLTSYP---ARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDA 344 (365)
Q Consensus 271 ---g~~e~A~~~fe~~l~~~P---~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~ 344 (365)
|++++|...|++++..+| .++.+|..++.++...|++++|...|++++.+ .+.....|..........|+.
T Consensus 232 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~a~~~l~~~~~~lg~~ 308 (474)
T 4abn_A 232 QNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL---DPAWPEPQQREQQLLEFLSRL 308 (474)
T ss_dssp CCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 99999999999999999999999999999985 344677888888888888988
Q ss_pred HHHHHHHH
Q psy17788 345 EAVENVKK 352 (365)
Q Consensus 345 ~~a~~v~~ 352 (365)
+.+...+.
T Consensus 309 ~eAi~~~~ 316 (474)
T 4abn_A 309 TSLLESKG 316 (474)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhc
Confidence 88876543
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.79 E-value=1.5e-17 Score=156.70 Aligned_cols=253 Identities=9% Similarity=-0.016 Sum_probs=207.2
Q ss_pred CCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC------
Q psy17788 109 PNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND------ 182 (365)
Q Consensus 109 p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~------ 182 (365)
+.....|...+..+...|++++|..+|++++...|.. ......+|..++.++...|+++.|...|++++...+
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTED-LKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccc-HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 4566788999999999999999999999999976631 111246888999999999999999999999987631
Q ss_pred -CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCC---CcHHHHHHHHHHHHHcCC--------------------hH
Q psy17788 183 -ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTH---SSVNIYLQCATLLLRLGQ--------------------KD 238 (365)
Q Consensus 183 -~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~a~~~~~~g~--------------------~~ 238 (365)
...++..++.+|...|++++|...|++++......+ ....++..+|.++...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 134778899999999999999999999998762111 125589999999999999 99
Q ss_pred HHHHHHHHHHhcCCC----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh------HHHHHHHHHHhcCChH
Q psy17788 239 TARHILQRGLNNLPP----AVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVD------VWGVYVDMLVKSDRVD 308 (365)
Q Consensus 239 ~A~~~l~ral~~~p~----~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~------~w~~~~~~~~~~g~~~ 308 (365)
+|..+|.+++...+. .....++..+|.++...|+++.|...|++++...|...+ ++..++.++...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999999999876321 113557888899999999999999999999998776655 8999999999999999
Q ss_pred HHHHHHHHHHhCCC--C-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhh
Q psy17788 309 LGRQVIQRAVTQKL--P-PKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNSK 362 (365)
Q Consensus 309 ~Ar~~~eral~~~l--~-~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~~ 362 (365)
+|..+|++++.... . +.....++...+......|+++.|...+++|++..+...
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 301 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN 301 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC
Confidence 99999999997311 1 111245777888888899999999999999999877654
No 61
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.78 E-value=1.6e-16 Score=142.86 Aligned_cols=208 Identities=9% Similarity=-0.087 Sum_probs=189.4
Q ss_pred CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHc----ccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHH----
Q psy17788 92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQ----ATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHL---- 163 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~----~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~---- 163 (365)
++..+|+..|++++. |+++.+|..++.++.. .+++++|...|++++... ....|..++.++..
T Consensus 20 ~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-------~~~a~~~lg~~~~~g~~~ 90 (273)
T 1ouv_A 20 KDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-------YSNGCHLLGNLYYSGQGV 90 (273)
T ss_dssp TCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHTSSS
T ss_pred CCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHhCCCCc
Confidence 555589999999998 8889999999999999 999999999999999853 36889999999999
Q ss_pred hCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH----cC
Q psy17788 164 YGTKESLQECLHEAVRCNDETKVYMNMMEIYAA----SAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLR----LG 235 (365)
Q Consensus 164 ~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~----~g 235 (365)
.++++.|+..|++++... +..++..++.+|.. .+++++|+..|+++++.. ++.++..++.++.. .+
T Consensus 91 ~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~~~~~~~ 164 (273)
T 1ouv_A 91 SQNTNKALQYYSKACDLK-YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN-----DGDGCTILGSLYDAGRGTPK 164 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCC
T ss_pred ccCHHHHHHHHHHHHHcC-CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHcCCCCCC
Confidence 999999999999999874 77899999999999 999999999999999853 78999999999999 99
Q ss_pred ChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHh----cCCh
Q psy17788 236 QKDTARHILQRGLNNLPPAVHVTLITRFALAENK----FGDASRAQALLEHTLTSYPARVDVWGVYVDMLVK----SDRV 307 (365)
Q Consensus 236 ~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~----~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~----~g~~ 307 (365)
++++|..+|+++++.. +...+..+|.++.. .+++++|...|++++...| ..++..++.++.. .|++
T Consensus 165 ~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~ 238 (273)
T 1ouv_A 165 DLKKALASYDKACDLK----DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNE 238 (273)
T ss_dssp CHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCS
T ss_pred CHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCH
Confidence 9999999999999873 24677888999999 9999999999999999876 7899999999999 9999
Q ss_pred HHHHHHHHHHHhC
Q psy17788 308 DLGRQVIQRAVTQ 320 (365)
Q Consensus 308 ~~Ar~~~eral~~ 320 (365)
++|..+|++++.+
T Consensus 239 ~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 239 KQAIENFKKGCKL 251 (273)
T ss_dssp TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 9999999999984
No 62
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.78 E-value=2e-17 Score=168.77 Aligned_cols=166 Identities=13% Similarity=0.118 Sum_probs=98.1
Q ss_pred chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHH
Q psy17788 149 DRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQC 227 (365)
Q Consensus 149 ~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 227 (365)
++..+|..++.++...|++++|+..|++|++.+|+ ..+|..++.+|.+.|++++|+..|+++++.. |.++.+|..+
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~---P~~~~a~~nL 83 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS---PTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHH
Confidence 34445555555555555555555555555555543 3455555566666666666666666666655 5666666666
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCh
Q psy17788 228 ATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRV 307 (365)
Q Consensus 228 a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~ 307 (365)
|.++...|++++|+..|+++++..|.. ..++..+|.++...|++++|...|+++++.+|++..+|..++.++...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~--~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAF--ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 666666666666666666666666653 445555566666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHh
Q psy17788 308 DLGRQVIQRAVT 319 (365)
Q Consensus 308 ~~Ar~~~eral~ 319 (365)
++|...|++++.
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666666554
No 63
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.78 E-value=7.2e-18 Score=172.07 Aligned_cols=173 Identities=13% Similarity=0.103 Sum_probs=163.2
Q ss_pred cCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HH
Q psy17788 107 GQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-TK 185 (365)
Q Consensus 107 ~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~ 185 (365)
..|+++.+|..++..+.+.|++++|+..|++||+..| ++..+|..++.++...|++++|+..|++|++.+|+ ..
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-----~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~ 78 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-----EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 78 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 4799999999999999999999999999999999999 77899999999999999999999999999999985 57
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHH
Q psy17788 186 VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFAL 265 (365)
Q Consensus 186 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~ 265 (365)
+|..++.+|...|++++|++.|+++++.. |.++.+|..+|.++...|++++|+..|++|++..|+. ..++..+|.
T Consensus 79 a~~nLg~~l~~~g~~~~A~~~~~kAl~l~---P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~--~~a~~~L~~ 153 (723)
T 4gyw_A 79 AYSNMGNTLKEMQDVQGALQCYTRAIQIN---PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF--PDAYCNLAH 153 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC--HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--hHHHhhhhh
Confidence 99999999999999999999999999998 9999999999999999999999999999999999995 667889999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC
Q psy17788 266 AENKFGDASRAQALLEHTLTSYPA 289 (365)
Q Consensus 266 ~~~~~g~~e~A~~~fe~~l~~~P~ 289 (365)
++...|++++|...|++++...|+
T Consensus 154 ~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 154 CLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHHhChh
Confidence 999999999999999999987654
No 64
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.78 E-value=3.7e-17 Score=142.98 Aligned_cols=198 Identities=11% Similarity=0.070 Sum_probs=170.1
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHH
Q psy17788 150 RLNVWTSLLNLEHLYGTKESLQECLHEAVRCND--ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQC 227 (365)
Q Consensus 150 ~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 227 (365)
....|+..+..+...|+++.|+..|++++...| +..++..++.++...|++++|+..|+++++.. |.++.+|..+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l 82 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN---YNLANAYIGK 82 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC---cchHHHHHHH
Confidence 357899999999999999999999999999985 56788889999999999999999999999998 9999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCcchH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChhHHHHHHHH
Q psy17788 228 ATLLLRLGQKDTARHILQRGLNNLPPAVHV-----TLITRFALAENKFGDASRAQALLEHTLTSYPA--RVDVWGVYVDM 300 (365)
Q Consensus 228 a~~~~~~g~~~~A~~~l~ral~~~p~~~~~-----~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~--~~~~w~~~~~~ 300 (365)
|.++...|++++|...|++++...|.+... .++...|.++...|++++|...|++++..+|+ +..+|..++.+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 999999999999999999999999997533 67888999999999999999999999999999 89999999999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q psy17788 301 LVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRN 360 (365)
Q Consensus 301 ~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~ 360 (365)
+...| ..+++++..+ .+.. ...+. .......|.++.|...+++|++.-+.
T Consensus 163 ~~~~~-----~~~~~~a~~~--~~~~-~~~~~--~~~~~~~~~~~~A~~~~~~a~~l~p~ 212 (228)
T 4i17_A 163 FYNNG-----ADVLRKATPL--ASSN-KEKYA--SEKAKADAAFKKAVDYLGEAVTLSPN 212 (228)
T ss_dssp HHHHH-----HHHHHHHGGG--TTTC-HHHHH--HHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHH-----HHHHHHHHhc--ccCC-HHHHH--HHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 97654 5567777764 2222 22222 22345567899999999999987554
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.77 E-value=2.9e-17 Score=149.92 Aligned_cols=252 Identities=9% Similarity=-0.006 Sum_probs=203.6
Q ss_pred CHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-------C
Q psy17788 111 NSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND-------E 183 (365)
Q Consensus 111 ~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~-------~ 183 (365)
+...|...+..+...|++++|+.+|++++...|.. ......+|..++.++...|+++.|...|++++...+ .
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTED-LKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 82 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCccc-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHH
Confidence 34567888999999999999999999999976631 111257788899999999999999999999987632 1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCC---cHHHHHHHHHHHHHcCC--------------------hHHH
Q psy17788 184 TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHS---SVNIYLQCATLLLRLGQ--------------------KDTA 240 (365)
Q Consensus 184 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~a~~~~~~g~--------------------~~~A 240 (365)
..++..++.++...|++++|...|++++......+. ...++..++.++...|+ +++|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 347788899999999999999999999987621111 24589999999999999 9999
Q ss_pred HHHHHHHHhcCCC----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh------HHHHHHHHHHhcCChHHH
Q psy17788 241 RHILQRGLNNLPP----AVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVD------VWGVYVDMLVKSDRVDLG 310 (365)
Q Consensus 241 ~~~l~ral~~~p~----~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~------~w~~~~~~~~~~g~~~~A 310 (365)
..++++++...+. .....++..+|.++...|+++.|...|++++...|...+ +|..++.++...|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999998876321 123557788899999999999999999999988765444 889999999999999999
Q ss_pred HHHHHHHHhCCCC---CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhc
Q psy17788 311 RQVIQRAVTQKLP---PKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNSKN 363 (365)
Q Consensus 311 r~~~eral~~~l~---~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~~~ 363 (365)
..+|++++..... +.....++...+......|+++.|...+++|++..+...+
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 298 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD 298 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Confidence 9999999873111 1112456777788888999999999999999998776543
No 66
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.77 E-value=4.1e-17 Score=145.92 Aligned_cols=182 Identities=10% Similarity=-0.009 Sum_probs=144.4
Q ss_pred hcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC--
Q psy17788 106 LGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-- 183 (365)
Q Consensus 106 ~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-- 183 (365)
..+|.++..++..+..+...|++++|+..|++++...|... ....+|+.++.++...|+++.|+..|++++..+|.
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~ 86 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHE--WAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP 86 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCST--THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCc--chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc
Confidence 45788999999999999999999999999999999888321 12688999999999999999999999999998773
Q ss_pred --HHHHHHHHHHHHH--------hCCHHHHHHHHHHHHHHhcCCCCcHHHH-----------------HHHHHHHHHcCC
Q psy17788 184 --TKVYMNMMEIYAA--------SAQIRDLESTVKLLLKKAGQTHSSVNIY-----------------LQCATLLLRLGQ 236 (365)
Q Consensus 184 --~~~~~~l~~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~-----------------~~~a~~~~~~g~ 236 (365)
..++..++.++.. .|++++|+..|+++++.+ |.++.++ +.+|.++...|+
T Consensus 87 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~ 163 (261)
T 3qky_A 87 RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKLARKQYEAARLYERREL 163 (261)
T ss_dssp THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 3578888999998 999999999999999998 7776555 666777777777
Q ss_pred hHHHHHHHHHHHhcCCCcc-hHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCChh
Q psy17788 237 KDTARHILQRGLNNLPPAV-HVTLITRFALAENKF----------GDASRAQALLEHTLTSYPARVD 292 (365)
Q Consensus 237 ~~~A~~~l~ral~~~p~~~-~~~~~~~~a~~~~~~----------g~~e~A~~~fe~~l~~~P~~~~ 292 (365)
+++|+..|++++...|... ...++..+|.++... |++++|...|++++..+|++..
T Consensus 164 ~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 164 YEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 7777777777777777644 244666667777655 6777777777777777777643
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.77 E-value=5e-17 Score=153.59 Aligned_cols=258 Identities=9% Similarity=0.009 Sum_probs=205.3
Q ss_pred HHHHHHhhcCCCCHHHHHH------HHHHHHcccCHHHHHHHHHHHHhhccCc-cccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788 99 DGFDRMLLGQPNNSELWVK------YMAYHLQATEIEKARSIARRALTVINIR-NEEDRLNVWTSLLNLEHLYGTKESLQ 171 (365)
Q Consensus 99 ~~fe~~l~~~p~~~~~w~~------~~~~~~~~~~~e~A~~~~~raL~~~p~~-~~~~~~~~w~~~~~l~~~~g~~~~a~ 171 (365)
..|+++ ...|.+...++. .+.++...|++++|...|++|+...... .......++..++.++...|+++.|.
T Consensus 85 ~~~~~i-~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~ 163 (383)
T 3ulq_A 85 DLLLEI-DKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSM 163 (383)
T ss_dssp HHHHHH-HHHTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hHHHHH-HhcCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 455553 345554444444 7888899999999999999999863321 11235688899999999999999999
Q ss_pred HHHHHHHHcCCC--------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCC---CCcHHHHHHHHHHHHHcCChHHH
Q psy17788 172 ECLHEAVRCNDE--------TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQT---HSSVNIYLQCATLLLRLGQKDTA 240 (365)
Q Consensus 172 ~v~~ral~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~a~~~~~~g~~~~A 240 (365)
..|.+|+...+. ..++..++.+|...|++++|...|++++...... +....++..+|.++...|++++|
T Consensus 164 ~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A 243 (383)
T 3ulq_A 164 DYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDA 243 (383)
T ss_dssp HHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHH
Confidence 999999987431 2477888999999999999999999999876211 11235899999999999999999
Q ss_pred HHHHHHHHhc-----C-CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCChhHHHHHHHHHHhcCC---
Q psy17788 241 RHILQRGLNN-----L-PPAVHVTLITRFALAENKFGDASRAQALLEHTLTSY-----PARVDVWGVYVDMLVKSDR--- 306 (365)
Q Consensus 241 ~~~l~ral~~-----~-p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~-----P~~~~~w~~~~~~~~~~g~--- 306 (365)
..+|++++.. . |. ...++..+|.++...|++++|...|++++... |.....+..++.++...|+
T Consensus 244 ~~~~~~al~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 321 (383)
T 3ulq_A 244 IPYFKRAIAVFEESNILPS--LPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEA 321 (383)
T ss_dssp HHHHHHHHHHHHHTTCGGG--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHH
T ss_pred HHHHHHHHHHHHhhccchh--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHH
Confidence 9999999984 3 43 47788999999999999999999999999874 3333446678899999999
Q ss_pred hHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhc
Q psy17788 307 VDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNSKN 363 (365)
Q Consensus 307 ~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~~~ 363 (365)
+.+|..+++++- ..+....++...+.+....|+++.|...+++|++.-++..+
T Consensus 322 ~~~al~~~~~~~----~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~ 374 (383)
T 3ulq_A 322 IQGFFDFLESKM----LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQG 374 (383)
T ss_dssp HHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSS
T ss_pred HHHHHHHHHHCc----CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc
Confidence 888888888772 12345567888889999999999999999999998776543
No 68
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.74 E-value=2.2e-16 Score=131.82 Aligned_cols=164 Identities=12% Similarity=0.069 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q psy17788 151 LNVWTSLLNLEHLYGTKESLQECLHEAVRCND-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCAT 229 (365)
Q Consensus 151 ~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~ 229 (365)
..+|..++..+...|+++.|...|++++...| +..++..++.++...|++++|..+|+++++.. |.++.+|..++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~ 84 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA---PDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCHHHHHHHHH
Confidence 34555555555566666666666666665554 33455666666666666666666666666665 666666666666
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHH
Q psy17788 230 LLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDL 309 (365)
Q Consensus 230 ~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~ 309 (365)
++...|++++|..+|++++...|.. ..++..+|.++...|++++|..+|++++...|.+..+|..++.++...|++++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEANPIN--FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCcHh--HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHH
Confidence 6666666666666666666666653 34555566666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHh
Q psy17788 310 GRQVIQRAVT 319 (365)
Q Consensus 310 Ar~~~eral~ 319 (365)
|..+|++++.
T Consensus 163 A~~~~~~~~~ 172 (186)
T 3as5_A 163 ALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7666666665
No 69
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.74 E-value=4.9e-16 Score=129.65 Aligned_cols=171 Identities=13% Similarity=0.040 Sum_probs=135.8
Q ss_pred CHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HHHHHH
Q psy17788 111 NSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-TKVYMN 189 (365)
Q Consensus 111 ~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~~~ 189 (365)
...+|..++..+...|++++|..+|++++...| ....+|..++.++...|+++.|...|++++...|. ..+|..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 81 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADA-----FDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATV 81 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-----cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 356777788888888888888888888887766 55677888888888888888888888888887763 567777
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Q psy17788 190 MMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENK 269 (365)
Q Consensus 190 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~ 269 (365)
++.++...|++++|..+|++++... |.++.+|..+|.++...|++++|..+|++++...|.. ..++..+|.++..
T Consensus 82 ~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~ 156 (186)
T 3as5_A 82 LGLTYVQVQKYDLAVPLLIKVAEAN---PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE--GKVHRAIAFSYEQ 156 (186)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcC---cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc--hHHHHHHHHHHHH
Confidence 8888888888888888888888877 7788888888888888888888888888888887774 4566777888888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCh
Q psy17788 270 FGDASRAQALLEHTLTSYPARV 291 (365)
Q Consensus 270 ~g~~e~A~~~fe~~l~~~P~~~ 291 (365)
.|++++|...|++++...|++.
T Consensus 157 ~~~~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 157 MGRHEEALPHFKKANELDEGAS 178 (186)
T ss_dssp TTCHHHHHHHHHHHHHHHHCCC
T ss_pred cCCHHHHHHHHHHHHHcCCCch
Confidence 8888888888888888777654
No 70
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.73 E-value=4.8e-16 Score=138.90 Aligned_cols=172 Identities=10% Similarity=-0.014 Sum_probs=153.9
Q ss_pred chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHH
Q psy17788 149 DRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE----TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIY 224 (365)
Q Consensus 149 ~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 224 (365)
.....++..+..+...|+++.|+..|++++..+|. ..++..++.+|...|++++|+..|+++++.++.++..+.++
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 55788999999999999999999999999999885 56899999999999999999999999999984334567899
Q ss_pred HHHHHHHHH--------cCChHHHHHHHHHHHhcCCCcchHH-HH--------------HHHHHHHHHcCCHHHHHHHHH
Q psy17788 225 LQCATLLLR--------LGQKDTARHILQRGLNNLPPAVHVT-LI--------------TRFALAENKFGDASRAQALLE 281 (365)
Q Consensus 225 ~~~a~~~~~--------~g~~~~A~~~l~ral~~~p~~~~~~-~~--------------~~~a~~~~~~g~~e~A~~~fe 281 (365)
+.+|.++.. .|++++|...|++++...|.+..+. .. ..+|.++...|+++.|+..|+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 172 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYE 172 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 999999999 9999999999999999999876543 22 677999999999999999999
Q ss_pred HHHHhCCC---ChhHHHHHHHHHHhc----------CChHHHHHHHHHHHhC
Q psy17788 282 HTLTSYPA---RVDVWGVYVDMLVKS----------DRVDLGRQVIQRAVTQ 320 (365)
Q Consensus 282 ~~l~~~P~---~~~~w~~~~~~~~~~----------g~~~~Ar~~~eral~~ 320 (365)
+++..+|+ ...+|..++.++... |++++|..+|++++..
T Consensus 173 ~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 173 AVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 99999998 456899999999877 8889999999999984
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=151.51 Aligned_cols=233 Identities=9% Similarity=0.032 Sum_probs=177.3
Q ss_pred HHhc-CCCCCChHHHHHHhh--------cCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccC---ccccchHHHHH
Q psy17788 88 ELLQ-NGEPVSPDGFDRMLL--------GQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINI---RNEEDRLNVWT 155 (365)
Q Consensus 88 ~l~~-~~~p~a~~~fe~~l~--------~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~---~~~~~~~~~w~ 155 (365)
.+.. ++..+|+..|++++. .+|....+|..++.++...|++++|..+|++++..... ........+|.
T Consensus 36 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 115 (311)
T 3nf1_A 36 QYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLN 115 (311)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 3444 666689999999998 46788899999999999999999999999999986310 00114577888
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcC--------C-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc-----CCCCcH
Q psy17788 156 SLLNLEHLYGTKESLQECLHEAVRCN--------D-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAG-----QTHSSV 221 (365)
Q Consensus 156 ~~~~l~~~~g~~~~a~~v~~ral~~~--------~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~ 221 (365)
.++.++...|+++.|...|++++... | ...++..++.++...|++++|+.+|++++..+. ..+...
T Consensus 116 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 195 (311)
T 3nf1_A 116 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVA 195 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999999999999999999999873 2 234678899999999999999999999998721 115667
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---------cch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17788 222 NIYLQCATLLLRLGQKDTARHILQRGLNNLPP---------AVH----VTLITRFALAENKFGDASRAQALLEHTLTSYP 288 (365)
Q Consensus 222 ~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~---------~~~----~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P 288 (365)
.++..+|.++...|++++|..+|++++...|. ... ...+...+......+.+..+...|..++...|
T Consensus 196 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 275 (311)
T 3nf1_A 196 KTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSP 275 (311)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCc
Confidence 88999999999999999999999999975322 111 22233334444456677788889999999999
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788 289 ARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ 320 (365)
Q Consensus 289 ~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~ 320 (365)
....+|..++.++...|++++|..+|++++.+
T Consensus 276 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 276 TVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999974
No 72
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.72 E-value=2.2e-16 Score=160.86 Aligned_cols=187 Identities=11% Similarity=-0.028 Sum_probs=167.9
Q ss_pred hcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHH--------hhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy17788 106 LGQPNNSELWVKYMAYHLQATEIEKARSIARRAL--------TVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEA 177 (365)
Q Consensus 106 ~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL--------~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ra 177 (365)
..+|+++.+++..+ ...|++++|...|++++ ...| +...+|..++.++...|+++.|+..|+++
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p-----~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 459 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFS-----ESVELPLMEVRALLDLGDVAKATRKLDDL 459 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCT-----TCSHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccc-----cchhHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34677777776555 78999999999999999 6667 66789999999999999999999999999
Q ss_pred HHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcch
Q psy17788 178 VRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVH 256 (365)
Q Consensus 178 l~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~ 256 (365)
++.+|. ..+|..++.+|...|++++|+..|+++++.. |.++.+|..+|.++...|++++ ...|+++++..|.+
T Consensus 460 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~---P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~-- 533 (681)
T 2pzi_A 460 AERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF---PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGV-- 533 (681)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS---TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTC--
T ss_pred hccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCch--
Confidence 999884 5799999999999999999999999999998 9999999999999999999999 99999999999995
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCC
Q psy17788 257 VTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDR 306 (365)
Q Consensus 257 ~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~ 306 (365)
..++..+|.++...|++++|...|++++..+|++..+|..++.++...|.
T Consensus 534 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 534 ISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 56788899999999999999999999999999999999999999877665
No 73
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.72 E-value=7.9e-17 Score=143.78 Aligned_cols=228 Identities=9% Similarity=0.037 Sum_probs=169.6
Q ss_pred CCCCCChHHHHHHhh--------cCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccC---ccccchHHHHHHHHHH
Q psy17788 92 NGEPVSPDGFDRMLL--------GQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINI---RNEEDRLNVWTSLLNL 160 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~--------~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~---~~~~~~~~~w~~~~~l 160 (365)
++.++|+..|++++. .+|....+|..++.++...|++++|..+|++++..... ........+|..++.+
T Consensus 15 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~ 94 (283)
T 3edt_B 15 VPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVL 94 (283)
T ss_dssp SCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 455577777887776 34677889999999999999999999999999986410 0011557788899999
Q ss_pred HHHhCCHHHHHHHHHHHHHcC--------C-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh-----cCCCCcHHHHHH
Q psy17788 161 EHLYGTKESLQECLHEAVRCN--------D-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKA-----GQTHSSVNIYLQ 226 (365)
Q Consensus 161 ~~~~g~~~~a~~v~~ral~~~--------~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~ 226 (365)
+...|+++.|...|++++... | ...++..++.+|...|++++|..+|++++..+ +..+....++..
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 174 (283)
T 3edt_B 95 YGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNN 174 (283)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 999999999999999999872 2 23577888999999999999999999999872 011556788999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCC-------cchHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhCCCChhH
Q psy17788 227 CATLLLRLGQKDTARHILQRGLNNLPP-------AVHVTLITRFALAENKFGD------ASRAQALLEHTLTSYPARVDV 293 (365)
Q Consensus 227 ~a~~~~~~g~~~~A~~~l~ral~~~p~-------~~~~~~~~~~a~~~~~~g~------~e~A~~~fe~~l~~~P~~~~~ 293 (365)
+|.++...|++++|..+|++++...+. .....++...+.+....+. +..+...++.+....|....+
T Consensus 175 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (283)
T 3edt_B 175 LASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTT 254 (283)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 999999999999999999999976211 1112344445555554333 344455555554456677788
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788 294 WGVYVDMLVKSDRVDLGRQVIQRAVT 319 (365)
Q Consensus 294 w~~~~~~~~~~g~~~~Ar~~~eral~ 319 (365)
+..++.++...|++++|..+|++++.
T Consensus 255 ~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 255 LRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999986
No 74
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.71 E-value=3.1e-15 Score=141.17 Aligned_cols=244 Identities=10% Similarity=0.003 Sum_probs=198.4
Q ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHhhccCc-cccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC---C-----
Q psy17788 113 ELWVKYMAYHLQATEIEKARSIARRALTVINIR-NEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND---E----- 183 (365)
Q Consensus 113 ~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~-~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~---~----- 183 (365)
..|+..+..+...|++++|...|++|+...+.. .......++..++.++...|+++.|...+++|+...+ .
T Consensus 102 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 181 (378)
T 3q15_A 102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRT 181 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhH
Confidence 356777888899999999999999999864421 1224567888899999999999999999999998643 1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCC---CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh-----cCCCcc
Q psy17788 184 TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQT---HSSVNIYLQCATLLLRLGQKDTARHILQRGLN-----NLPPAV 255 (365)
Q Consensus 184 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~-----~~p~~~ 255 (365)
..++..++.+|...|++++|...|++++...... +....++..+|.++...|++++|..+|++++. ..|..
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~- 260 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL- 260 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-
Confidence 2367889999999999999999999999875211 12356889999999999999999999999999 55653
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----ChhHHHHHHHHHHhcCC---hHHHHHHHHHHHhCCCCCCCc
Q psy17788 256 HVTLITRFALAENKFGDASRAQALLEHTLTSYPA-----RVDVWGVYVDMLVKSDR---VDLGRQVIQRAVTQKLPPKKL 327 (365)
Q Consensus 256 ~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~-----~~~~w~~~~~~~~~~g~---~~~Ar~~~eral~~~l~~~~~ 327 (365)
..++..+|.++.+.|++++|..+|++++...+. ....+..++.++...|+ +.+|..+|++.- . .+..
T Consensus 261 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~---~-~~~~ 335 (378)
T 3q15_A 261 -PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN---L-HAYI 335 (378)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT---C-HHHH
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC---C-hhHH
Confidence 678889999999999999999999999998543 34456667778888888 888888888742 1 2335
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhh
Q psy17788 328 KPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNSK 362 (365)
Q Consensus 328 ~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~~ 362 (365)
..++...+.+....|+.+.|...+++|++.-++..
T Consensus 336 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~ 370 (378)
T 3q15_A 336 EACARSAAAVFESSCHFEQAAAFYRKVLKAQEDIL 370 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 56777888899999999999999999999877654
No 75
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.70 E-value=3.6e-15 Score=136.72 Aligned_cols=231 Identities=6% Similarity=-0.006 Sum_probs=197.3
Q ss_pred CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHccc--CHHHHHHHHHHHHhhccCccccchHHHHHHHHHHH----HHh-
Q psy17788 92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQAT--EIEKARSIARRALTVINIRNEEDRLNVWTSLLNLE----HLY- 164 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~--~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~----~~~- 164 (365)
...++++..++++|..+|++..+|...+.++...+ .++++...++.+|...| .+..+|.....+. ...
T Consensus 47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-----k~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-----KNYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-----TCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-----ccHHHHHHHHHHHHHHHHhcc
Confidence 34458999999999999999999999999999998 99999999999999999 7789998877766 555
Q ss_pred --CCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCHH--HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCC---
Q psy17788 165 --GTKESLQECLHEAVRCND-ETKVYMNMMEIYAASAQIR--DLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQ--- 236 (365)
Q Consensus 165 --g~~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g~~~--~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~--- 236 (365)
+.++.++.++.+++..+| +..+|.+..-++.+.|.++ ++++.+++++... +.|..+|...+.++...|.
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d---~~N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD---LKNNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHSSGGGCC
T ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHhccccch
Confidence 688999999999999998 5679999888888999988 9999999999998 9999999999999988887
Q ss_pred ---hHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhC---CCChhHHHHHHHHHHhcCChHH
Q psy17788 237 ---KDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDAS-RAQALLEHTLTSY---PARVDVWGVYVDMLVKSDRVDL 309 (365)
Q Consensus 237 ---~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e-~A~~~fe~~l~~~---P~~~~~w~~~~~~~~~~g~~~~ 309 (365)
+++++.++.+++...|.+..+ |...+.++.+.|... .....+++++... |.+..+|..+++++.+.|+.++
T Consensus 199 ~~~~~eEl~~~~~aI~~~p~n~Sa--W~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~ 276 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKCPQNPST--WNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNE 276 (306)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCHHH--HHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHH
T ss_pred hhhHHHHHHHHHHHHHhCCCCccH--HHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHH
Confidence 899999999999999997554 455577777887744 4566777777765 8889999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCcHHHHHHH
Q psy17788 310 GRQVIQRAVTQKLPPKKLKPLYMKW 334 (365)
Q Consensus 310 Ar~~~eral~~~l~~~~~~~~~~~~ 334 (365)
|..+|+++.. ++ ++..+..|.--
T Consensus 277 A~~~~~~l~~-~~-Dpir~~yW~~~ 299 (306)
T 3dra_A 277 SRTVYDLLKS-KY-NPIRSNFWDYQ 299 (306)
T ss_dssp HHHHHHHHHH-TT-CGGGHHHHHHH
T ss_pred HHHHHHHHHh-cc-ChHHHHHHHHH
Confidence 9999999986 23 34566777643
No 76
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.70 E-value=7.1e-16 Score=140.68 Aligned_cols=202 Identities=14% Similarity=0.081 Sum_probs=158.5
Q ss_pred HHHHHHHHHcccCHHHHHHHHHHHHhhccCcc-ccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-------HHH
Q psy17788 115 WVKYMAYHLQATEIEKARSIARRALTVINIRN-EEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-------TKV 186 (365)
Q Consensus 115 w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~-~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-------~~~ 186 (365)
+...+..+...|++++|...|++|+...+... ......+|..++.++...|+++.|+..|++|+.+.+. ..+
T Consensus 40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 119 (292)
T 1qqe_A 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (292)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 33446677889999999999999999654211 1123578888999999999999999999999988652 347
Q ss_pred HHHHHHHHHHh-CCHHHHHHHHHHHHHHhcCCCCc------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchH--
Q psy17788 187 YMNMMEIYAAS-AQIRDLESTVKLLLKKAGQTHSS------VNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHV-- 257 (365)
Q Consensus 187 ~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~------~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~-- 257 (365)
|..++.+|... |++++|+..|++++..+ +.. ..++..+|.++...|++++|..+|++++...|.....
T Consensus 120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~---~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 196 (292)
T 1qqe_A 120 KFELGEILENDLHDYAKAIDCYELAGEWY---AQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW 196 (292)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHH---HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHH---HhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccH
Confidence 88899999996 99999999999999987 432 5679999999999999999999999999988875432
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH-----HHHHHHHHH--hcCChHHHHHHHHHHHh
Q psy17788 258 ---TLITRFALAENKFGDASRAQALLEHTLTSYPARVDV-----WGVYVDMLV--KSDRVDLGRQVIQRAVT 319 (365)
Q Consensus 258 ---~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~-----w~~~~~~~~--~~g~~~~Ar~~~eral~ 319 (365)
..+...|.++...|+++.|+..|++++..+|..... +..++..+. ..+++.+|...|++++.
T Consensus 197 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 267788999999999999999999999999986553 344445443 45778999999988875
No 77
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.70 E-value=9.5e-16 Score=132.73 Aligned_cols=168 Identities=11% Similarity=0.048 Sum_probs=99.7
Q ss_pred CHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHH----------------HHHHHHHhCCHHHHHHHH
Q psy17788 111 NSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTS----------------LLNLEHLYGTKESLQECL 174 (365)
Q Consensus 111 ~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~----------------~~~l~~~~g~~~~a~~v~ 174 (365)
+...++..+..++..|++++|...|++++...| ++..+|.. ++.++...|+++.|+..|
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 77 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNI-----DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFY 77 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCH-----HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 567788889999999999999999999999888 66777776 555555555555555555
Q ss_pred HHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcC
Q psy17788 175 HEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQ--KDTARHILQRGLNNL 251 (365)
Q Consensus 175 ~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~--~~~A~~~l~ral~~~ 251 (365)
++++..+|. ..+|..++.+|...|++++|+..|+++++.. |.++.+|..+|.++...|. ...+...+.+++...
T Consensus 78 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (208)
T 3urz_A 78 KELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE---ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPT 154 (208)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCC
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCC
Confidence 555555553 3455555555555555555555555555555 5555555555555544432 233344444443211
Q ss_pred CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17788 252 PPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPA 289 (365)
Q Consensus 252 p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~ 289 (365)
| ....+...|..+...|++++|+..|++++..+|+
T Consensus 155 ~---~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 155 K---MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp H---HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred c---hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 1 1123333455555555555555555555555554
No 78
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.70 E-value=1.2e-15 Score=139.25 Aligned_cols=233 Identities=8% Similarity=0.001 Sum_probs=171.9
Q ss_pred ChHHHHHHhhcCCCCHHHHHHHHHHHHc--ccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHH
Q psy17788 97 SPDGFDRMLLGQPNNSELWVKYMAYHLQ--ATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECL 174 (365)
Q Consensus 97 a~~~fe~~l~~~p~~~~~w~~~~~~~~~--~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~ 174 (365)
+...+.++-+.-+.++..| .+ +.. .+++++|...|+++. .++...|+++.|...|
T Consensus 4 a~~~~~~a~k~~~~~~~~~-~~---~~~~~~~~~~~A~~~~~~a~-------------------~~~~~~g~~~~A~~~~ 60 (292)
T 1qqe_A 4 PVELLKRAEKKGVPSSGFM-KL---FSGSDSYKFEEAADLCVQAA-------------------TIYRLRKELNLAGDSF 60 (292)
T ss_dssp HHHHHHHHHHHSSCCCTHH-HH---HSCCSHHHHHHHHHHHHHHH-------------------HHHHHTTCTHHHHHHH
T ss_pred HHHHHHHHHHHhCcCCCcc-hh---cCCCCCccHHHHHHHHHHHH-------------------HHHHHcCCHHHHHHHH
Confidence 3344555554455443344 33 222 225889999988873 3456789999999999
Q ss_pred HHHHHcCC-------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCC---cHHHHHHHHHHHHHc-CChHHHHHH
Q psy17788 175 HEAVRCND-------ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHS---SVNIYLQCATLLLRL-GQKDTARHI 243 (365)
Q Consensus 175 ~ral~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~a~~~~~~-g~~~~A~~~ 243 (365)
.+++.+.+ ...+|..++.+|...|++++|+..|++++..+..... ...++..+|.++... |++++|..+
T Consensus 61 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~ 140 (292)
T 1qqe_A 61 LKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDC 140 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 99998742 1358899999999999999999999999998721111 256899999999996 999999999
Q ss_pred HHHHHhcCCCcch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh-------HHHHHHHHHHhcCChHHHHH
Q psy17788 244 LQRGLNNLPPAVH----VTLITRFALAENKFGDASRAQALLEHTLTSYPARVD-------VWGVYVDMLVKSDRVDLGRQ 312 (365)
Q Consensus 244 l~ral~~~p~~~~----~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~-------~w~~~~~~~~~~g~~~~Ar~ 312 (365)
|++|+...|...+ ..++..+|.++...|++++|...|++++...|.+.. +|..++.++...|+++.|+.
T Consensus 141 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 220 (292)
T 1qqe_A 141 YELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAAR 220 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999998775321 457888999999999999999999999999988654 57888999999999999999
Q ss_pred HHHHHHhCCCCCCCc----HHHHHHHHHHHH--hcCCHHHHHHHHHHH
Q psy17788 313 VIQRAVTQKLPPKKL----KPLYMKWLKLEE--QYGDAEAVENVKKEI 354 (365)
Q Consensus 313 ~~eral~~~l~~~~~----~~~~~~~l~~e~--~~G~~~~a~~v~~kA 354 (365)
.|++++.+ .|... ..++...+.... ..|+++.+...++++
T Consensus 221 ~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 221 TLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 99999974 33211 113333344332 345566666666554
No 79
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.69 E-value=3.9e-14 Score=138.36 Aligned_cols=237 Identities=7% Similarity=-0.068 Sum_probs=177.2
Q ss_pred CChHHHHHHhhcCCCCHHHHHHHHHHHHc----ccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHH----hCCH
Q psy17788 96 VSPDGFDRMLLGQPNNSELWVKYMAYHLQ----ATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHL----YGTK 167 (365)
Q Consensus 96 ~a~~~fe~~l~~~p~~~~~w~~~~~~~~~----~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~----~g~~ 167 (365)
+|+..|++++.. +++.++..++.++.. .+++++|...|++++...+ ...+..++.++.. .+++
T Consensus 169 ~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~-------~~a~~~lg~~y~~g~g~~~~~ 239 (490)
T 2xm6_A 169 MAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGD-------ELGQLHLADMYYFGIGVTQDY 239 (490)
T ss_dssp HHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHTSSSCCCH
T ss_pred HHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHcCCCCCCCH
Confidence 556666666654 456666667766665 6677777777777665322 3556666666654 5677
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHc-----CChH
Q psy17788 168 ESLQECLHEAVRCNDETKVYMNMMEIYAA----SAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRL-----GQKD 238 (365)
Q Consensus 168 ~~a~~v~~ral~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~-----g~~~ 238 (365)
+.|...|++++.. .+..++..++.+|.. .+++++|...|++++.. .++.++..++.++... ++++
T Consensus 240 ~~A~~~~~~a~~~-~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~~~~g~~~~~~ 313 (490)
T 2xm6_A 240 TQSRVLFSQSAEQ-GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ-----GNSDGQYYLAHLYDKGAEGVAKNRE 313 (490)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT-----TCHHHHHHHHHHHHHCBTTBCCCHH
T ss_pred HHHHHHHHHHHHC-CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHcCCCCCcCCHH
Confidence 7777777777765 345667777777777 77888888888888753 4677888888888887 7888
Q ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCChhHHHHHHHHHHh----cCChHHHH
Q psy17788 239 TARHILQRGLNNLPPAVHVTLITRFALAENKFG---DASRAQALLEHTLTSYPARVDVWGVYVDMLVK----SDRVDLGR 311 (365)
Q Consensus 239 ~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g---~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~----~g~~~~Ar 311 (365)
+|..+|+++++..+ ...+..+|.++...| ++++|..+|++++.. .++.+|..++.++.. .+++++|.
T Consensus 314 ~A~~~~~~a~~~~~----~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~ 387 (490)
T 2xm6_A 314 QAISWYTKSAEQGD----ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAA 387 (490)
T ss_dssp HHHHHHHHHHHTTC----HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHhcCC----HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 88888888887532 346677788888766 788999999999876 568899999999988 78999999
Q ss_pred HHHHHHHhCCCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHH
Q psy17788 312 QVIQRAVTQKLPPKKLKPLYMKWLKLEEQ----YGDAEAVENVKKEIEQYV 358 (365)
Q Consensus 312 ~~~eral~~~l~~~~~~~~~~~~l~~e~~----~G~~~~a~~v~~kA~~~v 358 (365)
.+|++++.. .....+.....++.. .|+.+.|...+++|++.-
T Consensus 388 ~~~~~A~~~-----~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 388 IWMRKAAEQ-----GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 999999973 235667777777766 789999999999998865
No 80
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.69 E-value=1.6e-16 Score=130.42 Aligned_cols=140 Identities=10% Similarity=0.046 Sum_probs=81.3
Q ss_pred HHhCCHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHH
Q psy17788 162 HLYGTKESLQECLHEAVRCNDET-KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTA 240 (365)
Q Consensus 162 ~~~g~~~~a~~v~~ral~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A 240 (365)
...|+++.|+..|++++...|.. ..++.++.+|.+.|++++|++.|+++++.. |.++.+|..+|.++...|++++|
T Consensus 8 ~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ---ERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCchHHH
Confidence 33445555555555555544432 244555666666666666666666666665 66666666666666666666666
Q ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCCChhHHHHHHHHHHhcCC
Q psy17788 241 RHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQA-LLEHTLTSYPARVDVWGVYVDMLVKSDR 306 (365)
Q Consensus 241 ~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~-~fe~~l~~~P~~~~~w~~~~~~~~~~g~ 306 (365)
...|+++++..|++ ..++..+|.++.+.|++++|.. +++++++.+|+++.+|...+.++...|+
T Consensus 85 ~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 85 VECYRRSVELNPTQ--KDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHCTTC--HHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 66666666666653 4455555666666666544333 3466666666666666666666555553
No 81
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.69 E-value=9.1e-16 Score=136.84 Aligned_cols=232 Identities=13% Similarity=0.090 Sum_probs=179.5
Q ss_pred HcccCHHHHHHHHHHHHhhccCc---cccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--------C-CHHHHHHH
Q psy17788 123 LQATEIEKARSIARRALTVINIR---NEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCN--------D-ETKVYMNM 190 (365)
Q Consensus 123 ~~~~~~e~A~~~~~raL~~~p~~---~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~--------~-~~~~~~~l 190 (365)
...|++++|...|++|+...... .......+|..++.++...|+++.|...|++++... | ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 46788888999999988853210 112567889999999999999999999999999873 2 23478889
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHh-----cCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----C-CcchHHH
Q psy17788 191 MEIYAASAQIRDLESTVKLLLKKA-----GQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNL-----P-PAVHVTL 259 (365)
Q Consensus 191 ~~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~-----p-~~~~~~~ 259 (365)
+.+|...|++++|...|++++... ..++....++..+|.++...|++++|..+|++++... + ......+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 999999999999999999999873 1125668899999999999999999999999999871 1 1124668
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCChhHHHHHHHHHHhcCChHHHH------HHHHHHHhCCCCC
Q psy17788 260 ITRFALAENKFGDASRAQALLEHTLTS---------YPARVDVWGVYVDMLVKSDRVDLGR------QVIQRAVTQKLPP 324 (365)
Q Consensus 260 ~~~~a~~~~~~g~~e~A~~~fe~~l~~---------~P~~~~~w~~~~~~~~~~g~~~~Ar------~~~eral~~~l~~ 324 (365)
+..+|.++...|++++|..+|++++.. +|....+|...+..+...+....+. ..++.+.. ..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 248 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV---DS 248 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC---CC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC---CC
Confidence 889999999999999999999999986 5666778888888877655443333 33332221 22
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy17788 325 KKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQY 357 (365)
Q Consensus 325 ~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~ 357 (365)
+.....+...+.+....|+++.|..++++|++.
T Consensus 249 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 249 PTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345567888889999999999999999999863
No 82
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.68 E-value=2e-14 Score=134.79 Aligned_cols=273 Identities=12% Similarity=0.004 Sum_probs=206.3
Q ss_pred HhcCCCCCChHHHHHHhhcCCCCHH-----HHHHHHHHHHcccCHHHHHHHHHHHHhhccCccc-cchHHHHHHHHHHHH
Q psy17788 89 LLQNGEPVSPDGFDRMLLGQPNNSE-----LWVKYMAYHLQATEIEKARSIARRALTVINIRNE-EDRLNVWTSLLNLEH 162 (365)
Q Consensus 89 l~~~~~p~a~~~fe~~l~~~p~~~~-----~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~-~~~~~~w~~~~~l~~ 162 (365)
+..++.++++..+++++...|.+.. ++..++.++...|+++.|+..+++++...+.... .....++..++.++.
T Consensus 25 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 104 (373)
T 1hz4_A 25 INDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF 104 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 3346677999999999988776532 5677788889999999999999999996653211 011233566777888
Q ss_pred HhCCHHHHHHHHHHHHHcCC-------C--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCC--CCcHHHHHHHHHHH
Q psy17788 163 LYGTKESLQECLHEAVRCND-------E--TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQT--HSSVNIYLQCATLL 231 (365)
Q Consensus 163 ~~g~~~~a~~v~~ral~~~~-------~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~a~~~ 231 (365)
..|+++.|...|++++...+ + ..++..++.++...|++++|...|++++...... +....++..++.++
T Consensus 105 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 184 (373)
T 1hz4_A 105 AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCS 184 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHH
Confidence 99999999999999987642 1 2356778999999999999999999999876211 12357889999999
Q ss_pred HHcCChHHHHHHHHHHHhcCCC--cchHH-HH--HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----hhHHHHHHHHHH
Q psy17788 232 LRLGQKDTARHILQRGLNNLPP--AVHVT-LI--TRFALAENKFGDASRAQALLEHTLTSYPAR----VDVWGVYVDMLV 302 (365)
Q Consensus 232 ~~~g~~~~A~~~l~ral~~~p~--~~~~~-~~--~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~----~~~w~~~~~~~~ 302 (365)
...|++++|..++++++...+. .+... .. ...+.++...|+++.|..++++++...|.. ...+..++.++.
T Consensus 185 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~ 264 (373)
T 1hz4_A 185 LARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQI 264 (373)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHH
Confidence 9999999999999999876332 21111 11 123455778999999999999999877653 235678899999
Q ss_pred hcCChHHHHHHHHHHHhCCCCCC---CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhh
Q psy17788 303 KSDRVDLGRQVIQRAVTQKLPPK---KLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNS 361 (365)
Q Consensus 303 ~~g~~~~Ar~~~eral~~~l~~~---~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~ 361 (365)
..|++++|...+++++...-... ....++..........|+.+.|...+.+|+...+..
T Consensus 265 ~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~ 326 (373)
T 1hz4_A 265 LLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT 326 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccc
Confidence 99999999999999987310001 122355566677778899999999999999887653
No 83
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.68 E-value=1.1e-15 Score=144.43 Aligned_cols=228 Identities=11% Similarity=0.017 Sum_probs=187.3
Q ss_pred CCCCCChHHHHHHhhc---CCC---CHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCcc--ccchHHHHHHHHHHHHH
Q psy17788 92 NGEPVSPDGFDRMLLG---QPN---NSELWVKYMAYHLQATEIEKARSIARRALTVINIRN--EEDRLNVWTSLLNLEHL 163 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~~---~p~---~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~--~~~~~~~w~~~~~l~~~ 163 (365)
++..+|+..|++++.. .|+ ...+|..++.++...|+++.|...+++|+...+... ......++..++.++..
T Consensus 117 g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~ 196 (383)
T 3ulq_A 117 REYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLD 196 (383)
T ss_dssp TCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHH
Confidence 6667999999999986 233 558999999999999999999999999999765432 11335677888889999
Q ss_pred hCCHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc--CC-CCcHHHHHHHHHHHHH
Q psy17788 164 YGTKESLQECLHEAVRCNDE-------TKVYMNMMEIYAASAQIRDLESTVKLLLKKAG--QT-HSSVNIYLQCATLLLR 233 (365)
Q Consensus 164 ~g~~~~a~~v~~ral~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~--~~-~~~~~~~~~~a~~~~~ 233 (365)
.|+++.|...|++++...+. ..++..++.+|...|++++|+..|++++.... .. +..+.++..+|.++..
T Consensus 197 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 276 (383)
T 3ulq_A 197 LKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYK 276 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHH
Confidence 99999999999999987542 13788999999999999999999999998531 11 5568899999999999
Q ss_pred cCChHHHHHHHHHHHhcCCC---cchHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCh
Q psy17788 234 LGQKDTARHILQRGLNNLPP---AVHVTLITRFALAENKFGD---ASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRV 307 (365)
Q Consensus 234 ~g~~~~A~~~l~ral~~~p~---~~~~~~~~~~a~~~~~~g~---~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~ 307 (365)
.|++++|..++++++...+. ......+..++.++...|+ .++|..++++. ...|....++..++.++...|++
T Consensus 277 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~ 355 (383)
T 3ulq_A 277 LGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNF 355 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCH
Confidence 99999999999999987432 1122335567888889999 88888888877 44455567889999999999999
Q ss_pred HHHHHHHHHHHhC
Q psy17788 308 DLGRQVIQRAVTQ 320 (365)
Q Consensus 308 ~~Ar~~~eral~~ 320 (365)
++|..+|++++..
T Consensus 356 ~~A~~~~~~al~~ 368 (383)
T 3ulq_A 356 QKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999973
No 84
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.68 E-value=6.5e-16 Score=129.94 Aligned_cols=170 Identities=14% Similarity=0.025 Sum_probs=114.3
Q ss_pred CCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHH
Q psy17788 108 QPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVY 187 (365)
Q Consensus 108 ~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~ 187 (365)
||.....++..+..++..|++++|...|++++...| ++..+|..++.++...|+++.|+..|++++...|+...+
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-----~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 76 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQ-----SRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYK 76 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHH-----TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-----CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHH
Confidence 445556677778888888888888888888888777 667888888888888888888888888887777633333
Q ss_pred HHHHHHH-HHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHH
Q psy17788 188 MNMMEIY-AASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALA 266 (365)
Q Consensus 188 ~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~ 266 (365)
..++.+. ...+....|+..|++++... |.++.+|+.+|.++...|++++|...|++++...|......++..++.+
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~al~~~---P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~ 153 (176)
T 2r5s_A 77 SLIAKLELHQQAAESPELKRLEQELAAN---PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDI 153 (176)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHH
Confidence 3333222 12223344667777777766 7777777777777777777777777777777777664334455666666
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q psy17788 267 ENKFGDASRAQALLEHTLT 285 (365)
Q Consensus 267 ~~~~g~~e~A~~~fe~~l~ 285 (365)
+...|+.++|...|+++|.
T Consensus 154 ~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 154 LSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHCSSCHHHHHHHHHHH
T ss_pred HHHhCCCCcHHHHHHHHHH
Confidence 6677777777777766653
No 85
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.67 E-value=4e-15 Score=130.28 Aligned_cols=189 Identities=12% Similarity=-0.030 Sum_probs=126.5
Q ss_pred CHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCH----HH
Q psy17788 111 NSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDET----KV 186 (365)
Q Consensus 111 ~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~----~~ 186 (365)
++..++..+..+...|++++|+..|++++...|... ....+|+.++.++...|+++.|+..|++++..+|.. .+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGP--YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST--THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHH
Confidence 456677777788888888888888888888766421 124677777777788888888888888888877743 25
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHH--------
Q psy17788 187 YMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVT-------- 258 (365)
Q Consensus 187 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~-------- 258 (365)
+..++.++...|.. ....+..++..+...|++++|...|++++...|+...+.
T Consensus 81 ~~~~g~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~ 141 (225)
T 2yhc_A 81 MYMRGLTNMALDDS-------------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVF 141 (225)
T ss_dssp HHHHHHHHHHHHC---------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhh-------------------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHH
Confidence 66666666543210 000111122222223444444444444444444433211
Q ss_pred -------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh---hHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788 259 -------LITRFALAENKFGDASRAQALLEHTLTSYPARV---DVWGVYVDMLVKSDRVDLGRQVIQRAVTQ 320 (365)
Q Consensus 259 -------~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~---~~w~~~~~~~~~~g~~~~Ar~~~eral~~ 320 (365)
.....|.++.+.|+++.|+..|++++..+|+++ +++..++.++.+.|+.++|+..|+++...
T Consensus 142 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 142 LKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 124568999999999999999999999999985 67999999999999999999999998873
No 86
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.67 E-value=2.1e-16 Score=129.72 Aligned_cols=146 Identities=14% Similarity=0.071 Sum_probs=128.5
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Q psy17788 190 MMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENK 269 (365)
Q Consensus 190 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~ 269 (365)
|+.++...|++++|+..|++++... |.++..++.+|.+|...|++++|+..|++++...|++ ..++..+|.++..
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~---p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~--~~a~~~lg~~~~~ 77 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP---RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD--PKAHRFLGLLYEL 77 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH---HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHH
Confidence 5677778899999999999999887 8889999999999999999999999999999999995 6678889999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHH-HHHHHHhCCCCCCCcHHHHHHHHHHHHhcCC
Q psy17788 270 FGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQ-VIQRAVTQKLPPKKLKPLYMKWLKLEEQYGD 343 (365)
Q Consensus 270 ~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~-~~eral~~~l~~~~~~~~~~~~l~~e~~~G~ 343 (365)
.|++++|...|+++++.+|+++++|..++.++.+.|+.++|.. ++++++.+ . |.+..+|.....+....|+
T Consensus 78 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 78 EENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--F-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--S-TTCHHHHHHHHHHHHTCCC
T ss_pred cCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--C-cCCHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999999999877655 56999985 3 4567888888888777775
No 87
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.67 E-value=3.7e-14 Score=130.01 Aligned_cols=231 Identities=9% Similarity=0.042 Sum_probs=194.4
Q ss_pred HHHHHHHHcccCH-HHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHcCCC-HHHHHHHH
Q psy17788 116 VKYMAYHLQATEI-EKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYG--TKESLQECLHEAVRCNDE-TKVYMNMM 191 (365)
Q Consensus 116 ~~~~~~~~~~~~~-e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g--~~~~a~~v~~ral~~~~~-~~~~~~l~ 191 (365)
..+....++.|++ ++|..+++++|...| ++..+|.....+....| .++.++..+..++..+|. ..+|..-.
T Consensus 36 ~~~~~a~~~~~e~s~~aL~~t~~~L~~nP-----~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~ 110 (306)
T 3dra_A 36 MGLLLALMKAEEYSERALHITELGINELA-----SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQ 110 (306)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCc-----HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHH
Confidence 3444444555554 689999999999999 88999999999888888 999999999999999985 57898887
Q ss_pred HHH----HHh---CCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChH--HHHHHHHHHHhcCCCcchHHHHHH
Q psy17788 192 EIY----AAS---AQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKD--TARHILQRGLNNLPPAVHVTLITR 262 (365)
Q Consensus 192 ~~~----~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~--~A~~~l~ral~~~p~~~~~~~~~~ 262 (365)
.++ ... +++++++.++++++... |.+..+|...+-++...|.++ +++.++.+++..+|.+.+++ ..
T Consensus 111 ~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~---pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW--~~ 185 (306)
T 3dra_A 111 LIIGQIMELNNNDFDPYREFDILEAMLSSD---PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAW--SH 185 (306)
T ss_dssp HHHHHHHHHTTTCCCTHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHH--HH
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHH--HH
Confidence 777 666 78999999999999999 999999999999999999988 99999999999999986655 44
Q ss_pred HHHHHHHcCC------HHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHH-HHHHHHHHHhCCCCCCCcHHHHHHHH
Q psy17788 263 FALAENKFGD------ASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDL-GRQVIQRAVTQKLPPKKLKPLYMKWL 335 (365)
Q Consensus 263 ~a~~~~~~g~------~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~-Ar~~~eral~~~l~~~~~~~~~~~~l 335 (365)
-+.+....|. ++++...+.+++..+|.+..+|..+..++.+.|.... +..+.++++.+.-..+.....|.-.+
T Consensus 186 R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la 265 (306)
T 3dra_A 186 RFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLA 265 (306)
T ss_dssp HHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHH
T ss_pred HHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHH
Confidence 4666677776 8999999999999999999999999999999887444 66788887763211234667777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q psy17788 336 KLEEQYGDAEAVENVKKEIEQ 356 (365)
Q Consensus 336 ~~e~~~G~~~~a~~v~~kA~~ 356 (365)
+...+.|+.+.|..+|+++++
T Consensus 266 ~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 266 KIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHccCCHHHHHHHHHHHHh
Confidence 877789999999999999886
No 88
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.66 E-value=2.3e-13 Score=132.96 Aligned_cols=203 Identities=9% Similarity=-0.085 Sum_probs=104.3
Q ss_pred CChHHHHHHhhcCCCCHHHHHHHHHHHHc----ccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHH----hCCH
Q psy17788 96 VSPDGFDRMLLGQPNNSELWVKYMAYHLQ----ATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHL----YGTK 167 (365)
Q Consensus 96 ~a~~~fe~~l~~~p~~~~~w~~~~~~~~~----~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~----~g~~ 167 (365)
+|+..|++++.. +++.+++.++.++.. .+++++|...|++++... ....+..++.++.. .+++
T Consensus 61 ~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-------~~~a~~~Lg~~y~~g~g~~~~~ 131 (490)
T 2xm6_A 61 QAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG-------LPQAQQNLGVMYHEGNGVKVDK 131 (490)
T ss_dssp HHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHTSSSCCCH
T ss_pred HHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHcCCCCCCCH
Confidence 555566666543 445566666666655 566666666666665521 23445555555554 4455
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH----cCChHH
Q psy17788 168 ESLQECLHEAVRCNDETKVYMNMMEIYAA----SAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLR----LGQKDT 239 (365)
Q Consensus 168 ~~a~~v~~ral~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~----~g~~~~ 239 (365)
+.|...|++++... +...+..++.+|.. .+++++|+..|++++.. .++.++..++.+|.. .+++++
T Consensus 132 ~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~g~g~~~~~~~ 205 (490)
T 2xm6_A 132 AESVKWFRLAAEQG-RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-----GNVWSCNQLGYMYSRGLGVERNDAI 205 (490)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHhcCCCCCcCHHH
Confidence 56666666655432 34455555555554 45555555555555542 245555555555555 455555
Q ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHh----cCChHHHH
Q psy17788 240 ARHILQRGLNNLPPAVHVTLITRFALAENK----FGDASRAQALLEHTLTSYPARVDVWGVYVDMLVK----SDRVDLGR 311 (365)
Q Consensus 240 A~~~l~ral~~~p~~~~~~~~~~~a~~~~~----~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~----~g~~~~Ar 311 (365)
|..+|++++... +...+..+|.++.. .+++++|..+|++++.. .++.++..++.++.. .+++++|.
T Consensus 206 A~~~~~~a~~~~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~ 279 (490)
T 2xm6_A 206 SAQWYRKSATSG----DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKAL 279 (490)
T ss_dssp HHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHH
T ss_pred HHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHH
Confidence 555555555431 12233444444443 44555555555554432 233444444444444 44455555
Q ss_pred HHHHHHHh
Q psy17788 312 QVIQRAVT 319 (365)
Q Consensus 312 ~~~eral~ 319 (365)
.+|++++.
T Consensus 280 ~~~~~a~~ 287 (490)
T 2xm6_A 280 EWYRKSAE 287 (490)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 55555443
No 89
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.66 E-value=1.9e-14 Score=125.94 Aligned_cols=182 Identities=9% Similarity=0.007 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcH---HHHH
Q psy17788 153 VWTSLLNLEHLYGTKESLQECLHEAVRCNDE----TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSV---NIYL 225 (365)
Q Consensus 153 ~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~ 225 (365)
.++..+..+...|+++.|+..|++++...|. ..++..++.+|...|++++|+..|+++++.+ |.++ .+++
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~---P~~~~~~~a~~ 82 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN---PTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCTTHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCCcHHHHHH
Confidence 3444444444445555555555555544442 1344445555555555555555555555544 3332 2444
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH-----------
Q psy17788 226 QCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVW----------- 294 (365)
Q Consensus 226 ~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w----------- 294 (365)
.+|.++...|.. .+ ..+..++......|++++|...|++++..+|++..++
T Consensus 83 ~~g~~~~~~~~~-----~~-------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~ 144 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL-------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKD 144 (225)
T ss_dssp HHHHHHHHHHC--------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh-----hh-------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH
Confidence 444444433211 00 0111223333457899999999999999999998776
Q ss_pred ------HHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy17788 295 ------GVYVDMLVKSDRVDLGRQVIQRAVTQKLPP-KKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQ 356 (365)
Q Consensus 295 ------~~~~~~~~~~g~~~~Ar~~~eral~~~l~~-~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~ 356 (365)
...+.++.+.|+++.|+..|++++.. .|. +.....+...+......|+.+.|...++++..
T Consensus 145 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 145 RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD-YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH-CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 46688999999999999999999984 222 12235788888888899999999999998765
No 90
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.65 E-value=4.1e-15 Score=140.28 Aligned_cols=228 Identities=9% Similarity=0.011 Sum_probs=185.3
Q ss_pred cCCCCCChHHHHHHhhcC------CCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccc--cchHHHHHHHHHHHH
Q psy17788 91 QNGEPVSPDGFDRMLLGQ------PNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNE--EDRLNVWTSLLNLEH 162 (365)
Q Consensus 91 ~~~~p~a~~~fe~~l~~~------p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~--~~~~~~w~~~~~l~~ 162 (365)
.++..+|+..|++++... |....++..++.++...|+++.|...+++|+...+.... .....++..++.++.
T Consensus 114 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~ 193 (378)
T 3q15_A 114 QKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD 193 (378)
T ss_dssp TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence 367779999999998763 234578999999999999999999999999997664321 134567888889999
Q ss_pred HhCCHHHHHHHHHHHHHcCC---C----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHH
Q psy17788 163 LYGTKESLQECLHEAVRCND---E----TKVYMNMMEIYAASAQIRDLESTVKLLLKKAG--QTHSSVNIYLQCATLLLR 233 (365)
Q Consensus 163 ~~g~~~~a~~v~~ral~~~~---~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~a~~~~~ 233 (365)
..|+++.|...|++|+...+ + ..++..++.+|...|++++|+..|++++..+. ..|..+.++..+|.++..
T Consensus 194 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 273 (378)
T 3q15_A 194 DFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCK 273 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHH
Confidence 99999999999999998642 1 24778899999999999999999999998321 116678999999999999
Q ss_pred cCChHHHHHHHHHHHhcCCC---cchHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCh
Q psy17788 234 LGQKDTARHILQRGLNNLPP---AVHVTLITRFALAENKFGD---ASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRV 307 (365)
Q Consensus 234 ~g~~~~A~~~l~ral~~~p~---~~~~~~~~~~a~~~~~~g~---~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~ 307 (365)
.|++++|..++++++...+. ......+..++.++...|+ ..+|..+|++. ...|....++..++.++...|++
T Consensus 274 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~ 352 (378)
T 3q15_A 274 AGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHF 352 (378)
T ss_dssp TTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCH
Confidence 99999999999999998543 2223345556667777888 88888888873 34455567888999999999999
Q ss_pred HHHHHHHHHHHh
Q psy17788 308 DLGRQVIQRAVT 319 (365)
Q Consensus 308 ~~Ar~~~eral~ 319 (365)
+.|..+|++++.
T Consensus 353 ~~A~~~~~~al~ 364 (378)
T 3q15_A 353 EQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999986
No 91
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.65 E-value=3.1e-15 Score=152.41 Aligned_cols=170 Identities=11% Similarity=-0.030 Sum_probs=154.4
Q ss_pred CCCCCChHHHHHHh--------hcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHH
Q psy17788 92 NGEPVSPDGFDRML--------LGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHL 163 (365)
Q Consensus 92 ~~~p~a~~~fe~~l--------~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~ 163 (365)
++..+|+..|++++ ..+|++..+|+.++..+...|++++|...|++++...| ++..+|..++.++..
T Consensus 405 ~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-----~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 405 SQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-----WRWRLVWYRAVAELL 479 (681)
T ss_dssp CCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-----chHHHHHHHHHHHHH
Confidence 55558999999999 89999999999999999999999999999999999989 778999999999999
Q ss_pred hCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHH
Q psy17788 164 YGTKESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARH 242 (365)
Q Consensus 164 ~g~~~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 242 (365)
.|+++.|+..|+++++.+|. ..+|..++.+|...|++++ +..|+++++.. |.++.+|..+|.++...|++++|..
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~---P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN---DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC---CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999985 5789999999999999999 99999999998 9999999999999999999999999
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHHHHHcCC
Q psy17788 243 ILQRGLNNLPPAVHVTLITRFALAENKFGD 272 (365)
Q Consensus 243 ~l~ral~~~p~~~~~~~~~~~a~~~~~~g~ 272 (365)
.|+++++..|.. ...+...|.++...|.
T Consensus 556 ~~~~al~l~P~~--~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHF--TTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTH--HHHHHHHHHHTC----
T ss_pred HHHhhcccCccc--HHHHHHHHHHHHccCC
Confidence 999999999985 5677777888766555
No 92
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.64 E-value=2.8e-13 Score=126.94 Aligned_cols=249 Identities=13% Similarity=0.069 Sum_probs=191.8
Q ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC---CH----H
Q psy17788 113 ELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND---ET----K 185 (365)
Q Consensus 113 ~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~---~~----~ 185 (365)
.++...+..+...|+++.|+..+++++...|.........++..++.++...|+++.|...+++++...+ .. .
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 4556677778899999999999999999776432222234566777788889999999999999998653 21 2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCC-----CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc---hH
Q psy17788 186 VYMNMMEIYAASAQIRDLESTVKLLLKKAGQT-----HSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV---HV 257 (365)
Q Consensus 186 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~---~~ 257 (365)
++..++.++...|++++|...|++++...... +....++..++.++...|++++|..++++++...+... .+
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 35678999999999999999999999875211 22456788899999999999999999999998876522 34
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChhHHHH-----HHHHHHhcCChHHHHHHHHHHHhCCCCC-CCcHH
Q psy17788 258 TLITRFALAENKFGDASRAQALLEHTLTSYPA--RVDVWGV-----YVDMLVKSDRVDLGRQVIQRAVTQKLPP-KKLKP 329 (365)
Q Consensus 258 ~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~--~~~~w~~-----~~~~~~~~g~~~~Ar~~~eral~~~l~~-~~~~~ 329 (365)
.++..+|.++...|++++|..++++++...+. ....|.. .+.++...|+++.|+.++++++.....+ .....
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 254 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 254 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence 56778899999999999999999999876433 2223332 3455778999999999999998732111 11233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhh
Q psy17788 330 LYMKWLKLEEQYGDAEAVENVKKEIEQYVRNS 361 (365)
Q Consensus 330 ~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~ 361 (365)
.+..........|+++.|...+++++...+..
T Consensus 255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~ 286 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPAEIVLEELNENARSL 286 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Confidence 56677788888999999999999999877653
No 93
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.64 E-value=1.3e-14 Score=132.15 Aligned_cols=164 Identities=15% Similarity=0.087 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q psy17788 151 LNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCAT 229 (365)
Q Consensus 151 ~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~ 229 (365)
...++..+......|+++.|...|++++..+|. ..++..++.++...|++++|+.+|++++... |.....+...+.
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~---p~~~~~~~~~~~ 193 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD---QDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG---CSHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh---cchHHHHHHHHH
Confidence 344444444444555555555555555555442 2344555555555555555555555555444 433333333444
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--hhHHHHHHHHHHhcCCh
Q psy17788 230 LLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPAR--VDVWGVYVDMLVKSDRV 307 (365)
Q Consensus 230 ~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~--~~~w~~~~~~~~~~g~~ 307 (365)
.+...++.+.|...|++++...|.+ ..++..+|.++...|++++|...|++++..+|+. ..+|..++.++...|+.
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~~--~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPED--AALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHhhcccCccHHHHHHHHhcCCcc--HHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 4444445555555555555555543 3344444555555555555555555555555554 44555555555555555
Q ss_pred HHHHHHHHHHHh
Q psy17788 308 DLGRQVIQRAVT 319 (365)
Q Consensus 308 ~~Ar~~~eral~ 319 (365)
+.|...|+|++.
T Consensus 272 ~~a~~~~r~al~ 283 (287)
T 3qou_A 272 DALASXYRRQLY 283 (287)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 555555555543
No 94
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.63 E-value=9.2e-15 Score=126.46 Aligned_cols=164 Identities=12% Similarity=0.061 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCH-HHHHH----------------HHHHHHHhCCHHHHHHHHHHHHHH
Q psy17788 151 LNVWTSLLNLEHLYGTKESLQECLHEAVRCNDET-KVYMN----------------MMEIYAASAQIRDLESTVKLLLKK 213 (365)
Q Consensus 151 ~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~-~~~~~----------------l~~~~~~~g~~~~A~~~~~~al~~ 213 (365)
.+.++..+......|+++.|+..|++++..+|.. .+|.. ++.+|...|++++|+..|+++++.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 5667778888888999999999999999998854 57777 999999999999999999999999
Q ss_pred hcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCh
Q psy17788 214 AGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGD--ASRAQALLEHTLTSYPARV 291 (365)
Q Consensus 214 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~--~e~A~~~fe~~l~~~P~~~ 291 (365)
. |.++.+|..+|.++...|++++|...|++++...|.+ ..++..+|.+++..|. ...+...|.+++...|. .
T Consensus 84 ~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~--~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 157 (208)
T 3urz_A 84 A---PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN--LAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-Q 157 (208)
T ss_dssp C---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-H
T ss_pred C---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-h
Confidence 8 9999999999999999999999999999999999985 5677888988877654 45567777777643332 3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788 292 DVWGVYVDMLVKSDRVDLGRQVIQRAVTQ 320 (365)
Q Consensus 292 ~~w~~~~~~~~~~g~~~~Ar~~~eral~~ 320 (365)
..|...+..+...|++++|+..|++++.+
T Consensus 158 ~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 158 YARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 45677788888889999999999999974
No 95
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.62 E-value=1.8e-14 Score=121.06 Aligned_cols=165 Identities=12% Similarity=0.067 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHH
Q psy17788 186 VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFAL 265 (365)
Q Consensus 186 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~ 265 (365)
.++..+..+...|++++|+..|+++++.. |.++.+|..+|.++...|++++|...|++++...| ++... ...+.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~--~~~~~ 81 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL---QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYK--SLIAK 81 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH---HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHH--HHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHH--HHHHH
Confidence 45667777788888888888888888877 88888888888888888888888888888887777 43322 22232
Q ss_pred HH-HHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCH
Q psy17788 266 AE-NKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDA 344 (365)
Q Consensus 266 ~~-~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~ 344 (365)
+. ...+....|...|++++..+|+++.+|..++.++...|++++|+..|++++... |.......|...+......|+.
T Consensus 82 ~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~a~~~l~~~~~~~g~~ 160 (176)
T 2r5s_A 82 LELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVN-LGAQDGEVKKTFMDILSALGQG 160 (176)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTTTTTHHHHHHHHHHHHHCSS
T ss_pred HHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-cccChHHHHHHHHHHHHHhCCC
Confidence 22 122333456788888888888888888888888888888888888888888631 2122345677777777778888
Q ss_pred HHHHHHHHHHHHH
Q psy17788 345 EAVENVKKEIEQY 357 (365)
Q Consensus 345 ~~a~~v~~kA~~~ 357 (365)
+.+...|.+++..
T Consensus 161 ~~A~~~y~~al~~ 173 (176)
T 2r5s_A 161 NAIASKYRRQLYS 173 (176)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH
Confidence 8888888887754
No 96
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.62 E-value=4e-14 Score=128.79 Aligned_cols=182 Identities=9% Similarity=0.015 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy17788 168 ESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRG 247 (365)
Q Consensus 168 ~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ra 247 (365)
+.....+.+.+ .++...+..++..+...|++++|+.+|++++... |.++.++..+|.++...|++++|..+|+++
T Consensus 103 ~~l~~~l~~~l--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~la~~~~~~g~~~~A~~~l~~~ 177 (287)
T 3qou_A 103 EAIRALLDXVL--PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS---NQNGEIGLLLAETLIALNRSEDAEAVLXTI 177 (287)
T ss_dssp HHHHHHHHHHS--CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT---TSCHHHHHHHHHHHHHTTCHHHHHHHHTTS
T ss_pred HHHHHHHHHHc--CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC---CcchhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444443 2234567777888888888888888888888887 888888888888888888888888888888
Q ss_pred HhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCc
Q psy17788 248 LNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKL 327 (365)
Q Consensus 248 l~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~ 327 (365)
+...|.. .......+..+...|..+.|...|++++..+|++++++..++.++...|++++|...|++++... |....
T Consensus 178 ~~~~p~~--~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p~~~~ 254 (287)
T 3qou_A 178 PLQDQDT--RYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXD-LTAAD 254 (287)
T ss_dssp CGGGCSH--HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTGGG
T ss_pred chhhcch--HHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-ccccc
Confidence 7777753 33334445556667777778888888888888888888888888888888888888888888741 11122
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy17788 328 KPLYMKWLKLEEQYGDAEAVENVKKEIEQY 357 (365)
Q Consensus 328 ~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~ 357 (365)
...+...+.+....|+.+.+...+.+++..
T Consensus 255 ~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 255 GQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp GHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 567777788777788888888888887754
No 97
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.61 E-value=1.1e-12 Score=121.01 Aligned_cols=218 Identities=10% Similarity=-0.013 Sum_probs=181.3
Q ss_pred CCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccC----------HHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHH
Q psy17788 94 EPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATE----------IEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHL 163 (365)
Q Consensus 94 ~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~----------~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~ 163 (365)
.++++..++++|..+|.+..+|.....+....+. ++++..+++.+|...| .+..+|.....+...
T Consensus 46 s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-----Kny~aW~hR~wlL~~ 120 (331)
T 3dss_A 46 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-----KSYGTWHHRCWLLSR 120 (331)
T ss_dssp SHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHhc
Confidence 3388999999999999999999999988876655 6899999999999999 779999998888888
Q ss_pred hC--CHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHc-----
Q psy17788 164 YG--TKESLQECLHEAVRCND-ETKVYMNMMEIYAASAQ-IRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRL----- 234 (365)
Q Consensus 164 ~g--~~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~----- 234 (365)
.| .++.+..++.+++..+| +..+|....-+....|. ++++++.+++++... |.|..+|...+.++...
T Consensus 121 l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~---p~N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 121 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN---FSNYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHHSCCC-
T ss_pred cCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHhhhccc
Confidence 88 48999999999999998 56899988888888998 699999999999998 99999999999998887
Q ss_pred ---------CChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCChhHHH
Q psy17788 235 ---------GQKDTARHILQRGLNNLPPAVHVTLITRFALAENKF----------GDASRAQALLEHTLTSYPARVDVWG 295 (365)
Q Consensus 235 ---------g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~----------g~~e~A~~~fe~~l~~~P~~~~~w~ 295 (365)
+.++++..++.+++...|.+..++.+..+. +.... +..++++..+..++...|++.-.+.
T Consensus 198 ~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~l-l~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~ 276 (331)
T 3dss_A 198 SGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWL-LGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLL 276 (331)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH-HHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHH
Confidence 457899999999999999987766555332 22222 3578999999999999999833333
Q ss_pred HHHHHH---HhcCChHHHHHHHHHHHhC
Q psy17788 296 VYVDML---VKSDRVDLGRQVIQRAVTQ 320 (365)
Q Consensus 296 ~~~~~~---~~~g~~~~Ar~~~eral~~ 320 (365)
.++.+. ...|..++++..+.+.+.+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 277 TIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 333222 2457888999999999975
No 98
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.59 E-value=7.4e-14 Score=139.00 Aligned_cols=163 Identities=11% Similarity=0.079 Sum_probs=87.2
Q ss_pred cCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHH
Q psy17788 126 TEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLE 204 (365)
Q Consensus 126 ~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~ 204 (365)
|++++|...|++++...| ....+|..++.++...|++++|...|+++++.+|. ..+|..++.+|...|++++|.
T Consensus 3 g~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRP-----QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp -----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 445555555555555545 34455555555555555555555555555555543 345556666666666666666
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHc---CCHHHHHHHHH
Q psy17788 205 STVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKF---GDASRAQALLE 281 (365)
Q Consensus 205 ~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~---g~~e~A~~~fe 281 (365)
..|+++++.. |.++.+|..+|.++...|++++|...|+++++..|.. ..++..++.++... |++++|...|+
T Consensus 78 ~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~g~~~~A~~~~~ 152 (568)
T 2vsy_A 78 VLLQQASDAA---PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE--PYITAQLLNWRRRLCDWRALDVLSAQVR 152 (568)
T ss_dssp HHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred HHHHHHHhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 6666666665 6666666666666666666666666666666666653 34455556666666 66666666666
Q ss_pred HHHHhCCCChhHHHHHH
Q psy17788 282 HTLTSYPARVDVWGVYV 298 (365)
Q Consensus 282 ~~l~~~P~~~~~w~~~~ 298 (365)
+++..+|.....|..++
T Consensus 153 ~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 153 AAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHTCCCSCHHHHTT
T ss_pred HHHhcCCcccChHHHhC
Confidence 66666666655555444
No 99
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.58 E-value=4.1e-14 Score=112.51 Aligned_cols=119 Identities=16% Similarity=0.037 Sum_probs=101.3
Q ss_pred HHcCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcch
Q psy17788 178 VRCNDET-KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVH 256 (365)
Q Consensus 178 l~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~ 256 (365)
..++|.. ..|...+..|.+.|++++|+..|+++++.. |.++.+|..+|.++...|++++|+..|+++++..|..
T Consensus 6 a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-- 80 (126)
T 4gco_A 6 AYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD---PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF-- 80 (126)
T ss_dssp -CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--
T ss_pred HHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh--
Confidence 3345543 577788889999999999999999999888 8899999999999999999999999999999998885
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q psy17788 257 VTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDML 301 (365)
Q Consensus 257 ~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~ 301 (365)
..++..+|.++...|++++|...|+++++.+|++.+++..++.++
T Consensus 81 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 81 IKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 667788899999999999999999999999999998888887664
No 100
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.57 E-value=1.8e-13 Score=125.59 Aligned_cols=223 Identities=9% Similarity=0.005 Sum_probs=154.4
Q ss_pred cccCHHHHHHHHHHHHhhccC---c---cccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC---C----HHHHHHH
Q psy17788 124 QATEIEKARSIARRALTVINI---R---NEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND---E----TKVYMNM 190 (365)
Q Consensus 124 ~~~~~e~A~~~~~raL~~~p~---~---~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~---~----~~~~~~l 190 (365)
..|++++|..++++|.+..+. . ...+-...+...+.++...|+++.|...|.+++.+.+ + ..+|..+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l 82 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA 82 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345556666666666554331 0 0011123344445667778899999999999987753 1 3477888
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHhcCCC---CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc----hHHHHHHH
Q psy17788 191 MEIYAASAQIRDLESTVKLLLKKAGQTH---SSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV----HVTLITRF 263 (365)
Q Consensus 191 ~~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~----~~~~~~~~ 263 (365)
+.+|...|++++|+..|++++..+.... ....++..+|.++.. |++++|+.+|++++...|... ...++..+
T Consensus 83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l 161 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKA 161 (307)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 8999999999999999999998762111 125678889999988 999999999999998765421 24677888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCh------hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCc--HHHHHHHH
Q psy17788 264 ALAENKFGDASRAQALLEHTLTSYPARV------DVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKL--KPLYMKWL 335 (365)
Q Consensus 264 a~~~~~~g~~e~A~~~fe~~l~~~P~~~------~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~--~~~~~~~l 335 (365)
|.++...|++++|...|++++...|... ..+...+.++...|++++|+..|++++ ........ ..+....+
T Consensus 162 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~ 240 (307)
T 2ifu_A 162 SRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLL 240 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHH
Confidence 9999999999999999999998766543 367777888888899999999999998 42111111 12333444
Q ss_pred HHHHhcCCHHHHHH
Q psy17788 336 KLEEQYGDAEAVEN 349 (365)
Q Consensus 336 ~~e~~~G~~~~a~~ 349 (365)
... ..|+.+....
T Consensus 241 ~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 241 QAY-DEQDEEQLLR 253 (307)
T ss_dssp HHH-HTTCHHHHHH
T ss_pred HHH-HhcCHHHHHH
Confidence 433 4577665555
No 101
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.56 E-value=1.4e-13 Score=136.97 Aligned_cols=157 Identities=11% Similarity=0.051 Sum_probs=132.5
Q ss_pred CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788 92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ 171 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~ 171 (365)
++..+|+..|++++..+|++..+|..++..+...|++++|...|++++...| +...+|..++.++...|+++.|.
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-----GHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-----TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHCCCHHHHH
Confidence 4456889999999999999999999999999999999999999999999888 67899999999999999999999
Q ss_pred HHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHc---CChHHHHHHHHHH
Q psy17788 172 ECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRL---GQKDTARHILQRG 247 (365)
Q Consensus 172 ~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~---g~~~~A~~~l~ra 247 (365)
..|+++++.+|. ..+|..++.+|...|++++|...|+++++.. |.++.++..++.++... |++++|...|+++
T Consensus 78 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 78 VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL---PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 999999999985 5789999999999999999999999999998 99999999999999999 9999999999999
Q ss_pred HhcCCCcch
Q psy17788 248 LNNLPPAVH 256 (365)
Q Consensus 248 l~~~p~~~~ 256 (365)
+...|....
T Consensus 155 l~~~p~~~~ 163 (568)
T 2vsy_A 155 VAQGVGAVE 163 (568)
T ss_dssp HHHTCCCSC
T ss_pred HhcCCcccC
Confidence 999998644
No 102
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.56 E-value=3.8e-13 Score=105.61 Aligned_cols=130 Identities=17% Similarity=0.175 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHH
Q psy17788 186 VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFAL 265 (365)
Q Consensus 186 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~ 265 (365)
+|..++.++...|++++|..+|+++++.. |.+..+|..++.++...|++++|..+|++++...|.. ..++..+|.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~ 77 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD---PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS--AEAWYNLGN 77 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC---CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc--hHHHHHHHH
Confidence 56777888888888888888888888876 7788888888888888888888888888888887774 456677788
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788 266 AENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ 320 (365)
Q Consensus 266 ~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~ 320 (365)
++...|++++|..+|++++...|.+..+|..++.++...|+++.|..+|++++..
T Consensus 78 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 78 AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 8888888888888888888888888888888888888888888888888888863
No 103
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.54 E-value=3.9e-14 Score=127.47 Aligned_cols=205 Identities=18% Similarity=0.088 Sum_probs=170.3
Q ss_pred CCCCCChHHHHHHhhcCCCCHHHHHHH-------HHHHHcccCHHHHHHHHHHHHhhccCccc----------------c
Q psy17788 92 NGEPVSPDGFDRMLLGQPNNSELWVKY-------MAYHLQATEIEKARSIARRALTVINIRNE----------------E 148 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~-------~~~~~~~~~~e~A~~~~~raL~~~p~~~~----------------~ 148 (365)
++..+|...|.+++..+|...++|+.+ +..+...+....+...+.+++...|..-. .
T Consensus 20 ~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~ 99 (282)
T 4f3v_A 20 MSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVT 99 (282)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECS
T ss_pred CCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccC
Confidence 444488999999999999999999999 78888888888888899999984442110 1
Q ss_pred chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCc---HHHHH
Q psy17788 149 DRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSS---VNIYL 225 (365)
Q Consensus 149 ~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~ 225 (365)
....++++|+.++...|+++.|..+|..++...|...+++.++.++.+.+++++|+..|+.++.. +.+ ..+++
T Consensus 100 ~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~----~d~~~~~~a~~ 175 (282)
T 4f3v_A 100 SPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW----PDKFLAGAAGV 175 (282)
T ss_dssp SHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC----SCHHHHHHHHH
T ss_pred CHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc----CCcccHHHHHH
Confidence 23578899999999999999999999999888886657788899999999999999999877543 322 45899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q psy17788 226 QCATLLLRLGQKDTARHILQRGLNNL--PPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLV 302 (365)
Q Consensus 226 ~~a~~~~~~g~~~~A~~~l~ral~~~--p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~ 302 (365)
.+|.++...|++++|+..|++++... |.. ....++..|.++.++|+.++|+.+|++++..+|+ ..++..+.+.-.
T Consensus 176 ~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~-~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~~~~ 252 (282)
T 4f3v_A 176 AHGVAAANLALFTEAERRLTEANDSPAGEAC-ARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKDPSY 252 (282)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSTTTTTT-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHCTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhcCCCCccc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhCCCC
Confidence 99999999999999999999998543 432 3557778899999999999999999999999999 888888765443
No 104
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.54 E-value=8.4e-13 Score=122.47 Aligned_cols=231 Identities=10% Similarity=0.029 Sum_probs=186.4
Q ss_pred CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHccc-CHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHh-C-CHH
Q psy17788 92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQAT-EIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLY-G-TKE 168 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~-~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~-g-~~~ 168 (365)
...++++..++++|..+|++..+|.....+....+ .++++..+++.+|...| .+..+|.....+.... + .++
T Consensus 68 e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-----Kny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-----KSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-----CCHHHHHHHHHHHHHHCCSCCH
T ss_pred CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHhcCCChH
Confidence 44558999999999999999999999999998888 59999999999999999 7899999888887777 7 889
Q ss_pred HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCHH--------HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCC---
Q psy17788 169 SLQECLHEAVRCND-ETKVYMNMMEIYAASAQIR--------DLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQ--- 236 (365)
Q Consensus 169 ~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g~~~--------~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~--- 236 (365)
.++.++.+++..+| +..+|....-++.+.|.++ ++++.++++++.. +.|..+|...+.++...+.
T Consensus 143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d---p~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD---GRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHhcccccc
Confidence 99999999999988 5679988888888877777 9999999999998 9999999999999998886
Q ss_pred ----hHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHhC-----
Q psy17788 237 ----KDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDA--------------------SRAQALLEHTLTSY----- 287 (365)
Q Consensus 237 ----~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~--------------------e~A~~~fe~~l~~~----- 287 (365)
++++..++.+++...|.+..++.+. .-++.+.|.. .........++...
T Consensus 220 ~~~~~~eELe~~~~aI~~~P~n~SaW~Yl--r~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLIPHNVSAWNYL--RGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDT 297 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCHHHHHHH--HHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSC
T ss_pred chHHHHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccccc
Confidence 6899999999999999986655444 4455555543 22222222222222
Q ss_pred -CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHH
Q psy17788 288 -PARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKW 334 (365)
Q Consensus 288 -P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~ 334 (365)
+.+..++..+++++...|+.++|..+|+.... +. ++-.+..|.--
T Consensus 298 ~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~-~~-dpir~~yw~~~ 343 (349)
T 3q7a_A 298 PLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS-EY-DQMRAGYWEFR 343 (349)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TT-CGGGHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hh-ChHHHHHHHHH
Confidence 46788999999999999999999999999875 33 34466666543
No 105
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.53 E-value=4e-13 Score=123.26 Aligned_cols=196 Identities=9% Similarity=-0.018 Sum_probs=151.8
Q ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHhhccCcc-ccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC---C----HH
Q psy17788 114 LWVKYMAYHLQATEIEKARSIARRALTVINIRN-EEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND---E----TK 185 (365)
Q Consensus 114 ~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~-~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~---~----~~ 185 (365)
.+...+..+...|++++|...|.+++...+... ......++..++.++...|+++.|+..|++|+.+.+ + ..
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 344456778899999999999999999765321 112345777888889999999999999999998743 1 34
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCC---CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc----hHH
Q psy17788 186 VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTH---SSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV----HVT 258 (365)
Q Consensus 186 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~----~~~ 258 (365)
++..++.+|.. |++++|+..|++++..+.... ....++..+|.++...|++++|+.+|++++...|... ...
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 77889999988 999999999999999872111 1267899999999999999999999999999755432 134
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH-----HHHHHHHHHhcCChHHHHH
Q psy17788 259 LITRFALAENKFGDASRAQALLEHTLTSYPARVDV-----WGVYVDMLVKSDRVDLGRQ 312 (365)
Q Consensus 259 ~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~-----w~~~~~~~~~~g~~~~Ar~ 312 (365)
.+...+.++...|+++.|+..|++++ .+|..... ...++..+ ..|+.+.+..
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 67778889999999999999999999 99976433 33444444 5677665555
No 106
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.52 E-value=1.5e-12 Score=102.09 Aligned_cols=132 Identities=17% Similarity=0.186 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q psy17788 153 VWTSLLNLEHLYGTKESLQECLHEAVRCND-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLL 231 (365)
Q Consensus 153 ~w~~~~~l~~~~g~~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~ 231 (365)
+|..++.++...|+++.|..+|++++...| +..+|..++.++...|++++|..+|++++... |.++.+|..++.++
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC---CCchHHHHHHHHHH
Confidence 455555556666666666666666666554 33455666666666667777777777766665 66666677777777
Q ss_pred HHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17788 232 LRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPA 289 (365)
Q Consensus 232 ~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~ 289 (365)
...|++++|..++++++...|.. ..++..+|.++...|++++|...|++++..+|.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRS--AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 77777777777777776666653 345555666666777777777777777766664
No 107
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.52 E-value=2e-11 Score=112.60 Aligned_cols=221 Identities=9% Similarity=0.001 Sum_probs=175.4
Q ss_pred HcccCH-HHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHHcCC-CHHHHHHH
Q psy17788 123 LQATEI-EKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGT----------KESLQECLHEAVRCND-ETKVYMNM 190 (365)
Q Consensus 123 ~~~~~~-e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~----------~~~a~~v~~ral~~~~-~~~~~~~l 190 (365)
.+.|++ ++|..++..+|...| ++..+|..-..+....+. ++.+..++..++..+| +..+|.+-
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP-----~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR 114 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANP-----DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHR 114 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCT-----TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCc-----hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 344544 478999999999999 889999877776655443 5788999999999998 56899999
Q ss_pred HHHHHHhCC--HHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Q psy17788 191 MEIYAASAQ--IRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQ-KDTARHILQRGLNNLPPAVHVTLITRFALAE 267 (365)
Q Consensus 191 ~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~-~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~ 267 (365)
.-++...|. +++++.++++++... |.|..+|...+-++...|. +++++..+.+++..+|.+.+++ ...+.+.
T Consensus 115 ~wlL~~l~~~~~~~EL~~~~k~l~~d---prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW--~~R~~ll 189 (331)
T 3dss_A 115 CWLLSRLPEPNWARELELCARFLEAD---ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSW--HYRSCLL 189 (331)
T ss_dssp HHHHHHCSSCCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHH--HHHHHHH
T ss_pred HHHHhccCcccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHH--HHHHHHH
Confidence 888888884 899999999999999 9999999999999999998 5999999999999999976555 4445555
Q ss_pred HHc--------------CCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc-----------CChHHHHHHHHHHHhCCC
Q psy17788 268 NKF--------------GDASRAQALLEHTLTSYPARVDVWGVYVDMLVKS-----------DRVDLGRQVIQRAVTQKL 322 (365)
Q Consensus 268 ~~~--------------g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~-----------g~~~~Ar~~~eral~~~l 322 (365)
... +.++++...+.+++..+|++..+|+.+.-++... +.+++++..++.++..
T Consensus 190 ~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~-- 267 (331)
T 3dss_A 190 PQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL-- 267 (331)
T ss_dssp HHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--
Confidence 554 4578999999999999999999998766665544 3578999999999985
Q ss_pred CCCCcHHHHHHHHHHHH---hcCCHHHHHHHHHHHHH
Q psy17788 323 PPKKLKPLYMKWLKLEE---QYGDAEAVENVKKEIEQ 356 (365)
Q Consensus 323 ~~~~~~~~~~~~l~~e~---~~G~~~~a~~v~~kA~~ 356 (365)
.| .++-.+...+.+.. ..|..+.+...+.+.++
T Consensus 268 ~p-d~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 268 EP-ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp CT-TCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred Cc-ccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 33 34555555544433 35677777777776654
No 108
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.51 E-value=2.9e-13 Score=107.55 Aligned_cols=118 Identities=8% Similarity=-0.042 Sum_probs=68.2
Q ss_pred HhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC
Q psy17788 104 MLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE 183 (365)
Q Consensus 104 ~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~ 183 (365)
+...+|+....|...|..+.+.|++++|+..|++|+...| .+..+|..++.++...|+++.|+..|++++..+|.
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 79 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-----ENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK 79 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh
Confidence 3445666666666666666666666666666666666555 44555655555555555555555555555555543
Q ss_pred -HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q psy17788 184 -TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCAT 229 (365)
Q Consensus 184 -~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~ 229 (365)
..+|..++.+|...|++++|+..|+++++.. |.++.++..++.
T Consensus 80 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~---P~~~~a~~~l~~ 123 (126)
T 4gco_A 80 FIKGYIRKAACLVAMREWSKAQRAYEDALQVD---PSNEEAREGVRN 123 (126)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC---cCCHHHHHHHHH
Confidence 3455555555555555555555555555555 555555555543
No 109
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.50 E-value=3.1e-13 Score=121.59 Aligned_cols=199 Identities=8% Similarity=-0.073 Sum_probs=163.8
Q ss_pred cccCHHHHHHHHHHHHhhccCccccchHHHHHHH-------HHHHHHhCCHHHHHHHHHHHHHcCC-------C------
Q psy17788 124 QATEIEKARSIARRALTVINIRNEEDRLNVWTSL-------LNLEHLYGTKESLQECLHEAVRCND-------E------ 183 (365)
Q Consensus 124 ~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~-------~~l~~~~g~~~~a~~v~~ral~~~~-------~------ 183 (365)
..++...|+..|.+++...| +..++|+.+ .......+....+...+.+++.+.| +
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP-----~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~ 92 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDE-----SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYG 92 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTC
T ss_pred cCCCHHHHHHHHHHHHHhCh-----hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccc
Confidence 57899999999999999999 789999999 4555555556677788888888654 1
Q ss_pred ---------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc
Q psy17788 184 ---------TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPA 254 (365)
Q Consensus 184 ---------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~ 254 (365)
..+++.++.++...|++++|.++|..++... |.+. +++.++.++++.|++++|+..|+.++...+..
T Consensus 93 ~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~---p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~ 168 (282)
T 4f3v_A 93 DITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG---SEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKF 168 (282)
T ss_dssp CCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT---CHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHH
T ss_pred ccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcc
Confidence 4577889999999999999999999988765 7777 99999999999999999999999876543221
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHH
Q psy17788 255 VHVTLITRFALAENKFGDASRAQALLEHTLTSY--PA-RVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLY 331 (365)
Q Consensus 255 ~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~--P~-~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~ 331 (365)
....+.+.+|.++..+|++++|...|++++... |. .+++++.++.++.++|+.++|+.+|++++.. .|. ...+
T Consensus 169 ~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~--~~~~ 244 (282)
T 4f3v_A 169 LAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPE--PKVA 244 (282)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCC--HHHH
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc--HHHH
Confidence 113466777999999999999999999998654 66 6789999999999999999999999999984 333 5555
Q ss_pred HHHH
Q psy17788 332 MKWL 335 (365)
Q Consensus 332 ~~~l 335 (365)
....
T Consensus 245 ~aL~ 248 (282)
T 4f3v_A 245 AALK 248 (282)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5543
No 110
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.50 E-value=3.6e-14 Score=116.66 Aligned_cols=101 Identities=8% Similarity=-0.098 Sum_probs=78.9
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHH
Q psy17788 218 HSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVY 297 (365)
Q Consensus 218 ~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~ 297 (365)
|.++.+|+.+|..+...|++++|..+|++++...|.+ ..+|..+|.++...|++++|...|++++..+|+++.+|..+
T Consensus 33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~--~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l 110 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN--VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 6777778888888888888888888888888777774 45667777777788888888888888888888888888888
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC
Q psy17788 298 VDMLVKSDRVDLGRQVIQRAVTQ 320 (365)
Q Consensus 298 ~~~~~~~g~~~~Ar~~~eral~~ 320 (365)
+.++...|++++|+..|++++.+
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888888888764
No 111
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.49 E-value=3.6e-12 Score=110.50 Aligned_cols=160 Identities=9% Similarity=-0.036 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHhcCCCCcHHHHHHH
Q psy17788 152 NVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASA----QIRDLESTVKLLLKKAGQTHSSVNIYLQC 227 (365)
Q Consensus 152 ~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 227 (365)
..++.++.++...+++++|+..|++++.. .+..++..++.+|.. + ++++|...|++++. +.++.++..+
T Consensus 19 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~-----~g~~~a~~~L 91 (212)
T 3rjv_A 19 RAQYYLADTWVSSGDYQKAEYWAQKAAAQ-GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE-----AGSKSGEIVL 91 (212)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH-----TTCHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH-----CCCHHHHHHH
Confidence 34444444444444555555555554443 234445555555554 4 56666666666654 4466666666
Q ss_pred HHHHHH----cCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChhHHHHHHH
Q psy17788 228 ATLLLR----LGQKDTARHILQRGLNNLPPAVHVTLITRFALAENK----FGDASRAQALLEHTLTSYPARVDVWGVYVD 299 (365)
Q Consensus 228 a~~~~~----~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~----~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~ 299 (365)
+.+|.. .+++++|..+|++++...|...+...+..+|.++.. .+++++|..+|++++.. |.++.++..++.
T Consensus 92 g~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~ 170 (212)
T 3rjv_A 92 ARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGM 170 (212)
T ss_dssp HHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 666665 566666777777766655532234455666666666 56677777777777666 555666666666
Q ss_pred HHHhc-C-----ChHHHHHHHHHHHh
Q psy17788 300 MLVKS-D-----RVDLGRQVIQRAVT 319 (365)
Q Consensus 300 ~~~~~-g-----~~~~Ar~~~eral~ 319 (365)
+|... | ++++|...|++++.
T Consensus 171 ~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 171 MFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp HHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 66542 2 67777777777765
No 112
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.49 E-value=1.4e-14 Score=134.94 Aligned_cols=167 Identities=13% Similarity=-0.007 Sum_probs=94.5
Q ss_pred ccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHH
Q psy17788 125 ATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLE 204 (365)
Q Consensus 125 ~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~ 204 (365)
.+++++|...|++++...| ....+|..++.++...|+++.|+..|++++..+|..... ..+
T Consensus 126 L~~~~~A~~~~~~a~~~~p-----~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~-----------~~~--- 186 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKL-----EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF-----------SNE--- 186 (336)
T ss_dssp EEEEECCCCGGGCCHHHHH-----HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC-----------CSH---
T ss_pred EeecccccchhcCCHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccC-----------ChH---
Confidence 3444555555555555444 445555556666666666666666666666555532100 000
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17788 205 STVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTL 284 (365)
Q Consensus 205 ~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l 284 (365)
...... +....+|..+|.++...|++++|+..|++++...|.. ..++..+|.++...|++++|+..|++++
T Consensus 187 ----~~~~~~---~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~lg~~~~~~g~~~~A~~~~~~al 257 (336)
T 1p5q_A 187 ----EAQKAQ---ALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNN--EKGLSRRGEAHLAVNDFELARADFQKVL 257 (336)
T ss_dssp ----HHHHHH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----HHHHHH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 000000 1124666666666666666666666666666666663 4455666666666666666666666666
Q ss_pred HhCCCChhHHHHHHHHHHhcCChHHH-HHHHHHHHh
Q psy17788 285 TSYPARVDVWGVYVDMLVKSDRVDLG-RQVIQRAVT 319 (365)
Q Consensus 285 ~~~P~~~~~w~~~~~~~~~~g~~~~A-r~~~eral~ 319 (365)
..+|++..+|..++.++...|+.+++ +.+|.+++.
T Consensus 258 ~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 258 QLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666 445555543
No 113
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.48 E-value=5.1e-13 Score=109.72 Aligned_cols=111 Identities=7% Similarity=-0.039 Sum_probs=85.8
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy17788 99 DGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAV 178 (365)
Q Consensus 99 ~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral 178 (365)
..|.+++..+|++..+|+.++..+.+.|++++|...|++++...| .+..+|..++.++...|+++.|+..|++++
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-----~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al 97 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-----YNVDYIMGLAAIYQIKEQFQQAADLYAVAF 97 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 347778888888888888888888888888888888888888777 567777777777777777777777777777
Q ss_pred HcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q psy17788 179 RCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKA 214 (365)
Q Consensus 179 ~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 214 (365)
..+|+ ..+|..++.+|...|++++|+..|+++++..
T Consensus 98 ~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 98 ALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 77764 4567777777777777777777777777765
No 114
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.48 E-value=2.8e-13 Score=122.84 Aligned_cols=196 Identities=7% Similarity=-0.080 Sum_probs=153.8
Q ss_pred CCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HHHH
Q psy17788 109 PNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-TKVY 187 (365)
Q Consensus 109 p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~ 187 (365)
|++...|...+..+...|++++|...|++++...| ....+|..++.++...|+++.|...|+++++.+|. ..+|
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 75 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-----LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAH 75 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHH
Confidence 67888999999999999999999999999999888 67899999999999999999999999999999885 5788
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Q psy17788 188 MNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAE 267 (365)
Q Consensus 188 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~ 267 (365)
..++.+|...|++++|...|+++++.. |.++..+...+....+ ...+...........|....+. ..++.+.
T Consensus 76 ~~lg~~~~~~g~~~~A~~~~~~al~l~---p~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~--~~l~~l~ 147 (281)
T 2c2l_A 76 FFLGQCQLEMESYDEAIANLQRAYSLA---KEQRLNFGDDIPSALR---IAKKKRWNSIEERRIHQESELH--SYLTRLI 147 (281)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH---HHTTCCCCSHHHHHHH---HHHHHHHHHHHHTCCCCCCHHH--HHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHH--HHHHHHH
Confidence 999999999999999999999999987 5442211111111111 1222233333334556654443 3345543
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc-CChHHHHHHHHHHHh
Q psy17788 268 NKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKS-DRVDLGRQVIQRAVT 319 (365)
Q Consensus 268 ~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~-g~~~~Ar~~~eral~ 319 (365)
.|++++|...|++++...|.+..+...+..++... +.++++..+|.++..
T Consensus 148 --~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 148 --AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp --HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred --HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 68999999999999999999888888888777776 678899999998876
No 115
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.48 E-value=2.2e-12 Score=105.74 Aligned_cols=130 Identities=13% Similarity=0.002 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHH
Q psy17788 185 KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFA 264 (365)
Q Consensus 185 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a 264 (365)
..|..++..+...|++++|...|++++... |.++.+|..+|.++...|++++|...|++++...|.. ..++..+|
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~a 88 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN---PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY--IKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--HHHHHHHH
Confidence 356667777777777888888888777776 7777778888888877888888888888887777764 45666777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHH--HHhcCChHHHHHHHHHHHh
Q psy17788 265 LAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDM--LVKSDRVDLGRQVIQRAVT 319 (365)
Q Consensus 265 ~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~--~~~~g~~~~Ar~~~eral~ 319 (365)
.++...|++++|...|++++..+|.+..+|..++.+ +...|++++|..+++++..
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 777778888888888888888778777777444443 6667777777777776654
No 116
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.47 E-value=2.6e-13 Score=110.91 Aligned_cols=119 Identities=13% Similarity=0.016 Sum_probs=87.0
Q ss_pred HHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy17788 172 ECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNN 250 (365)
Q Consensus 172 ~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~ 250 (365)
..|++++..+|. ..++..++..+...|++++|+..|++++... |.++.+|..+|.++...|++++|...|++++..
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD---HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC---cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 456667766663 3466777777777777777777777777776 777777777777777777887787777777777
Q ss_pred CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHH
Q psy17788 251 LPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWG 295 (365)
Q Consensus 251 ~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~ 295 (365)
.|.+. .++..+|.++...|++++|...|++++...|+++....
T Consensus 85 ~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 85 DIXEP--RFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp STTCT--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred CCCCc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 77753 45566677777778888888788777777777665543
No 117
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.46 E-value=2.1e-11 Score=113.09 Aligned_cols=239 Identities=8% Similarity=-0.025 Sum_probs=188.5
Q ss_pred cCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHcCC-CH
Q psy17788 107 GQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYG-TKESLQECLHEAVRCND-ET 184 (365)
Q Consensus 107 ~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g-~~~~a~~v~~ral~~~~-~~ 184 (365)
..|+...+|-.+.......+..++|..+++++|...| ++..+|.....+....| .++.++..+..++..+| +.
T Consensus 49 y~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP-----~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny 123 (349)
T 3q7a_A 49 YSEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNP-----AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSY 123 (349)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCH
T ss_pred eCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCc-----hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcH
Confidence 3455556666666655666666889999999999999 88999999998888888 59999999999999998 46
Q ss_pred HHHHHHHHHHHHh-C-CHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChH--------HHHHHHHHHHhcCCCc
Q psy17788 185 KVYMNMMEIYAAS-A-QIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKD--------TARHILQRGLNNLPPA 254 (365)
Q Consensus 185 ~~~~~l~~~~~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~--------~A~~~l~ral~~~p~~ 254 (365)
.+|.....++... + ++++++.++++++... |.|..+|...+-++...|.++ +++.++.++++.+|.+
T Consensus 124 ~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d---pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N 200 (349)
T 3q7a_A 124 QVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD---PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRN 200 (349)
T ss_dssp HHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC---TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCC
Confidence 7999888888887 7 8999999999999988 999999999999998888877 9999999999999997
Q ss_pred chHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHH-----------------H
Q psy17788 255 VHVTLITRFALAENKFGD-------ASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDL-----------------G 310 (365)
Q Consensus 255 ~~~~~~~~~a~~~~~~g~-------~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~-----------------A 310 (365)
.++ |...+.+....|. ++++...+.+++..+|++..+|..+..++.+.|.... .
T Consensus 201 ~SA--W~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (349)
T 3q7a_A 201 NSA--WGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDI 278 (349)
T ss_dssp HHH--HHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC-------
T ss_pred HHH--HHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccc
Confidence 554 4555777777776 7899999999999999999999998888887765411 1
Q ss_pred HHHHHHHHhCCCCC------CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy17788 311 RQVIQRAVTQKLPP------KKLKPLYMKWLKLEEQYGDAEAVENVKKEIE 355 (365)
Q Consensus 311 r~~~eral~~~l~~------~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~ 355 (365)
-.+-+-++...-.. ......+.-.++.+...|+.+.|..+++...
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 279 ETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp -------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 12333333211011 2566677777788778899988888887754
No 118
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.46 E-value=7.8e-14 Score=132.54 Aligned_cols=218 Identities=14% Similarity=0.093 Sum_probs=70.2
Q ss_pred CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788 92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ 171 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~ 171 (365)
++..+|...+++. +++.+|..++..+++.|++++|...|.++- . ...|...+......|.++.|+
T Consensus 17 ~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika~--D--------~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 17 GNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKAD--D--------PSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcCC--C--------HHHHHHHHHHHHhCCCHHHHH
Confidence 5577888888888 334699999999999999999999998752 1 245666777777789999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q psy17788 172 ECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNL 251 (365)
Q Consensus 172 ~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~ 251 (365)
..++.+.+..++..+...++.+|.+.|++.++.++|+ +++...|..+|..+...|.+++|+.+|.++
T Consensus 82 ~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKKARESYVETELIFALAKTNRLAELEEFIN---------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp ---------------------------CHHHHTTTTT---------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc---------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 9998888866666777888889999999988887773 234458899999999999999999888875
Q ss_pred CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHH
Q psy17788 252 PPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLY 331 (365)
Q Consensus 252 p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~ 331 (365)
..|.++|.++.+.|+++.|...|+++ +++..|...+..+...|+++.|..+...++ ....-.
T Consensus 149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-------~~ad~l 210 (449)
T 1b89_A 149 ------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-------VHADEL 210 (449)
T ss_dssp ------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-------TCHHHH
T ss_pred ------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-------hCHhhH
Confidence 24567788888888888888888888 357777776666666666655544333211 111112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q psy17788 332 MKWLKLEEQYGDAEAVENVKKEIE 355 (365)
Q Consensus 332 ~~~l~~e~~~G~~~~a~~v~~kA~ 355 (365)
...+.++.+.|..+.+..++++|+
T Consensus 211 ~~lv~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 211 EELINYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHh
Confidence 234445555556555555555553
No 119
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.46 E-value=4.9e-13 Score=108.11 Aligned_cols=124 Identities=12% Similarity=-0.008 Sum_probs=90.1
Q ss_pred HHHHHHHHcCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy17788 172 ECLHEAVRCNDET-KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNN 250 (365)
Q Consensus 172 ~v~~ral~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~ 250 (365)
..|++++..+|.. ..+..++..+...|++++|+..|++++... |.++.+|..+|.++...|++++|...|++++..
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 81 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD---HYDARYFLGLGACRQSLGLYEQALQSYSYGALM 81 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4566666666633 466777777888888888888888888877 778888888888888888888888888888888
Q ss_pred CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q psy17788 251 LPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDM 300 (365)
Q Consensus 251 ~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~ 300 (365)
.|.++ .++..+|.++...|++++|...|++++..+|.++..+.....+
T Consensus 82 ~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 82 DINEP--RFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp CTTCT--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred CCCCc--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 87753 3556668888888888888888888888887776665544433
No 120
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.46 E-value=1e-11 Score=107.61 Aligned_cols=178 Identities=7% Similarity=-0.016 Sum_probs=151.3
Q ss_pred CCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhC----CHHH
Q psy17788 94 EPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYG----TKES 169 (365)
Q Consensus 94 ~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g----~~~~ 169 (365)
+|+|+..|+++... .++.++..++.++...+++++|...|++++... +...+..++.++.. + ++++
T Consensus 2 ~~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-------~~~a~~~lg~~y~~-~g~~~~~~~ 71 (212)
T 3rjv_A 2 ATEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG-------DGDALALLAQLKIR-NPQQADYPQ 71 (212)
T ss_dssp --CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-------CHHHHHHHHHHTTS-STTSCCHHH
T ss_pred CchHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHc-CCCCCCHHH
Confidence 57899999999865 789999999999999999999999999998842 36788888888877 6 8999
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHhcCCC--CcHHHHHHHHHHHHH----cCChHH
Q psy17788 170 LQECLHEAVRCNDETKVYMNMMEIYAA----SAQIRDLESTVKLLLKKAGQTH--SSVNIYLQCATLLLR----LGQKDT 239 (365)
Q Consensus 170 a~~v~~ral~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~a~~~~~----~g~~~~ 239 (365)
|...|++++.. .+..++..++.+|.. .+++++|+..|++++... + .++.++..++.+|.. .+++++
T Consensus 72 A~~~~~~A~~~-g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~---~~~~~~~a~~~Lg~~y~~g~g~~~d~~~ 147 (212)
T 3rjv_A 72 ARQLAEKAVEA-GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS---ESDAAVDAQMLLGLIYASGVHGPEDDVK 147 (212)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST---TSHHHHHHHHHHHHHHHHTSSSSCCHHH
T ss_pred HHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC---CCcchHHHHHHHHHHHHcCCCCCCCHHH
Confidence 99999999765 467788999999987 789999999999999864 4 248999999999999 889999
Q ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHhCC
Q psy17788 240 ARHILQRGLNNLPPAVHVTLITRFALAENKF-G-----DASRAQALLEHTLTSYP 288 (365)
Q Consensus 240 A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~-g-----~~e~A~~~fe~~l~~~P 288 (365)
|..+|++++.. |.+ ...+..+|.++..- | ++++|..+|++++..-.
T Consensus 148 A~~~~~~A~~~-~~~--~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 148 ASEYFKGSSSL-SRT--GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHHT-SCT--THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHc-CCC--HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 99999999987 443 33567789888764 4 89999999999998743
No 121
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.45 E-value=7.4e-13 Score=123.25 Aligned_cols=163 Identities=9% Similarity=0.049 Sum_probs=119.2
Q ss_pred CChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy17788 96 VSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLH 175 (365)
Q Consensus 96 ~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ 175 (365)
+|+..|++++..+|++..+|..++..+...|++++|+..|++|+...|...... .+.+
T Consensus 131 ~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~-----------------~~~~----- 188 (336)
T 1p5q_A 131 KAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS-----------------NEEA----- 188 (336)
T ss_dssp CCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCC-----------------SHHH-----
T ss_pred cccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCC-----------------hHHH-----
Confidence 567778888888899999999999999999999999999999999888431100 0111
Q ss_pred HHHHcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc
Q psy17788 176 EAVRCND-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPA 254 (365)
Q Consensus 176 ral~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~ 254 (365)
....+ ...+|..++.+|.+.|++++|+..|++++... |.++.+|+.+|.++...|++++|+..|++++...|..
T Consensus 189 --~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 263 (336)
T 1p5q_A 189 --QKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD---SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN 263 (336)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred --HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence 11111 13466777777777777777777777777776 7777777777777777777777777777777777775
Q ss_pred chHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhC
Q psy17788 255 VHVTLITRFALAENKFGDASRA-QALLEHTLTSY 287 (365)
Q Consensus 255 ~~~~~~~~~a~~~~~~g~~e~A-~~~fe~~l~~~ 287 (365)
..++..++.++...|+.++| +.+|.+++...
T Consensus 264 --~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (336)
T 1p5q_A 264 --KAAKTQLAVCQQRIRRQLAREKKLYANMFERL 295 (336)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556667777777777776 55666666543
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.45 E-value=1.1e-11 Score=106.38 Aligned_cols=133 Identities=12% Similarity=0.081 Sum_probs=113.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q psy17788 154 WTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLR 233 (365)
Q Consensus 154 w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~ 233 (365)
++.++..+...|+++.|+..|++++ .|+..+|..++.+|...|++++|+..|++++... |.++.+|..+|.++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ--DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD---KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---ccchHHHHHHHHHHHH
Confidence 4556667777888888988888885 5567788889999999999999999999999888 8889999999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCcc--------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q psy17788 234 LGQKDTARHILQRGLNNLPPAV--------------HVTLITRFALAENKFGDASRAQALLEHTLTSYPARV 291 (365)
Q Consensus 234 ~g~~~~A~~~l~ral~~~p~~~--------------~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~ 291 (365)
.|++++|...|++++...|... ...++..+|.++...|++++|...|++++..+|+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 9999999999999998877654 346778889999999999999999999999998763
No 123
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.45 E-value=9.3e-12 Score=120.53 Aligned_cols=43 Identities=9% Similarity=0.058 Sum_probs=14.6
Q ss_pred CCChHHHHHHhhcCCCCHHHHHHHHHHHHccc-----CHHHHHHHHHHHHh
Q psy17788 95 PVSPDGFDRMLLGQPNNSELWVKYMAYHLQAT-----EIEKARSIARRALT 140 (365)
Q Consensus 95 p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~-----~~e~A~~~~~raL~ 140 (365)
.+|+..|++++.. ++.++..++.++...+ ++++|...|++|+.
T Consensus 55 ~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~ 102 (452)
T 3e4b_A 55 KQAEATYRAAADT---SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFA 102 (452)
T ss_dssp -------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHH
Confidence 3555666666544 4455555555333322 55666666666665
No 124
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.44 E-value=5.9e-11 Score=114.86 Aligned_cols=222 Identities=8% Similarity=-0.034 Sum_probs=140.4
Q ss_pred HHHHHHHHHHccc---CHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHcCCCHHH
Q psy17788 114 LWVKYMAYHLQAT---EIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLY----GTKESLQECLHEAVRCNDETKV 186 (365)
Q Consensus 114 ~w~~~~~~~~~~~---~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~----g~~~~a~~v~~ral~~~~~~~~ 186 (365)
++..++.++...| ++++|...|++++...| .....++.++.++..- ++++.|...|+++. ..+..+
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-----~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa--~g~~~a 250 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-----VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA--PGYPAS 250 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-----SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG--GGSTHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc--CCCHHH
Confidence 6777777777777 77777777777777655 3345455566655433 46777777777776 345566
Q ss_pred HHHHHHH-H--HHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHhcCCCcchHH
Q psy17788 187 YMNMMEI-Y--AASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLG-----QKDTARHILQRGLNNLPPAVHVT 258 (365)
Q Consensus 187 ~~~l~~~-~--~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g-----~~~~A~~~l~ral~~~p~~~~~~ 258 (365)
+..++.+ | ...+++++|...|++++. ..++.+++.+|.+|. .| ++++|..+|+++. +.+ ..
T Consensus 251 ~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-----~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~--~~ 319 (452)
T 3e4b_A 251 WVSLAQLLYDFPELGDVEQMMKYLDNGRA-----ADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GRE--VA 319 (452)
T ss_dssp HHHHHHHHHHSGGGCCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTC--HH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCC--HH
Confidence 7777766 3 346777777777777775 347777777777776 44 7777777777776 443 45
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCCcHHH
Q psy17788 259 LITRFALAENK----FGDASRAQALLEHTLTSYPARVDVWGVYVDMLVK----SDRVDLGRQVIQRAVTQKLPPKKLKPL 330 (365)
Q Consensus 259 ~~~~~a~~~~~----~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~----~g~~~~Ar~~~eral~~~l~~~~~~~~ 330 (365)
....+|.++.. ..++++|..+|+++.. +.++.+...++.+|.. ..++.+|...|+++.... ....
T Consensus 320 A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g-----~~~a 392 (452)
T 3e4b_A 320 ADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD-----TPEA 392 (452)
T ss_dssp HHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC-----CHHH
T ss_pred HHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC-----CHHH
Confidence 55666766655 2377777777777765 4456677777777753 347777777777777631 1122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhh
Q psy17788 331 YMKWLKLEEQYGDAEAVENVKKEIEQYVRNS 361 (365)
Q Consensus 331 ~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~ 361 (365)
-.....+ ....+.+........+-++..+.
T Consensus 393 ~~~l~~l-~~~~~~~~~~~a~~~~~~~~~~~ 422 (452)
T 3e4b_A 393 NDLATQL-EAPLTPAQRAEGQRLVQQELAAR 422 (452)
T ss_dssp HHHHHHH-HTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHhCCHHHHHHHHHHHHHHHHhc
Confidence 2222223 23345555555556666655553
No 125
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.44 E-value=1.6e-12 Score=106.26 Aligned_cols=111 Identities=9% Similarity=0.005 Sum_probs=68.0
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy17788 99 DGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAV 178 (365)
Q Consensus 99 ~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral 178 (365)
..|++++..+|++...|+.++..+...|++++|...|++++...| .+..+|..++.++...|+++.|+..|++++
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 82 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-----YDSRFFLGLGACRQAMGQYDLAIHSYSYGA 82 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-----ccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 346666666666666666666666666666666666666666555 445566666666666666666666666666
Q ss_pred HcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q psy17788 179 RCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKA 214 (365)
Q Consensus 179 ~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 214 (365)
..+|. ..+|..++.+|...|++++|+..|+++++..
T Consensus 83 ~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 83 VMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 55553 3455555555555666666666666555555
No 126
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.44 E-value=6.2e-12 Score=98.25 Aligned_cols=118 Identities=12% Similarity=0.003 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHH
Q psy17788 185 KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFA 264 (365)
Q Consensus 185 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a 264 (365)
.+|..++.++...|++++|...|++++... |.++.+|..+|.++...|++++|..++.+++...|.. ..++..+|
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~ 87 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN---PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY--SKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC--HHHHHHHH
Confidence 466777888888888888888888888877 7788888888888888888888888888888887774 55667778
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCh
Q psy17788 265 LAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRV 307 (365)
Q Consensus 265 ~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~ 307 (365)
.++...|+++.|...|++++...|++..+|..++.++...|++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888888888888777764
No 127
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.43 E-value=1e-12 Score=106.28 Aligned_cols=111 Identities=11% Similarity=-0.037 Sum_probs=77.6
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy17788 99 DGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAV 178 (365)
Q Consensus 99 ~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral 178 (365)
..|++++..+|++...|+.++..+...|++++|...|++++...| .+..+|..++.++...|+++.|+..|++++
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 79 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-----YDARYFLGLGACRQSLGLYEQALQSYSYGA 79 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-----ccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 356777777777777777777777777777777777777777767 556777777777777777777777777777
Q ss_pred HcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q psy17788 179 RCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKA 214 (365)
Q Consensus 179 ~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 214 (365)
..+|. ..+|..++.+|...|++++|+..|++++...
T Consensus 80 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 80 LMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 76663 3566666777777777777777777777666
No 128
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.43 E-value=3.3e-11 Score=127.13 Aligned_cols=146 Identities=16% Similarity=0.156 Sum_probs=96.7
Q ss_pred CCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHH
Q psy17788 109 PNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYM 188 (365)
Q Consensus 109 p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~~ 188 (365)
.+++.+|.+|+..+...|++++|...|.+| +....|...+......|+++.|++.|..|....+...+..
T Consensus 1102 vn~p~vWsqLAKAql~~G~~kEAIdsYiKA----------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt 1171 (1630)
T 1xi4_A 1102 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA----------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVET 1171 (1630)
T ss_pred cCCHHHHHHHHHHHHhCCCHHHHHHHHHhc----------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccH
Confidence 456677777777777777777777777654 1235566666666777777777777777666655544555
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Q psy17788 189 NMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAEN 268 (365)
Q Consensus 189 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~ 268 (365)
.++..|.+.++++.. +-| ++ ..+...|...|..+...|++++|..+|.+| ..|.+++.++.
T Consensus 1172 ~LafaYAKl~rleel-e~f---I~-----~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLv 1232 (1630)
T 1xi4_A 1172 ELIFALAKTNRLAEL-EEF---IN-----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLV 1232 (1630)
T ss_pred HHHHHHHhhcCHHHH-HHH---Hh-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHH
Confidence 566666666666532 222 21 334456667888888888888888888774 25667777778
Q ss_pred HcCCHHHHHHHHHHH
Q psy17788 269 KFGDASRAQALLEHT 283 (365)
Q Consensus 269 ~~g~~e~A~~~fe~~ 283 (365)
+.|+++.|...+.++
T Consensus 1233 kLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1233 HLGEYQAAVDGARKA 1247 (1630)
T ss_pred HhCCHHHHHHHHHHh
Confidence 888888888888777
No 129
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.43 E-value=3.6e-12 Score=106.55 Aligned_cols=125 Identities=14% Similarity=0.186 Sum_probs=75.8
Q ss_pred CCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH-HHHcCCh--HHH
Q psy17788 165 GTKESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATL-LLRLGQK--DTA 240 (365)
Q Consensus 165 g~~~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~-~~~~g~~--~~A 240 (365)
|+++.|+..|++++..+|. ..+|..++.+|...|++++|+..|++++... |.++.+|..+|.+ +...|++ ++|
T Consensus 24 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR---GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ---CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 4555566666666665553 3455666666666666666666666666666 6666666666666 5566665 666
Q ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q psy17788 241 RHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVW 294 (365)
Q Consensus 241 ~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w 294 (365)
..+|++++...|.. ..++..+|.++...|+++.|...|++++..+|.+...+
T Consensus 101 ~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 101 RAMIDKALALDSNE--ITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHhCCCc--HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 66666666666654 34455556666666666666666666666666655444
No 130
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.42 E-value=2.5e-12 Score=107.52 Aligned_cols=121 Identities=7% Similarity=0.039 Sum_probs=110.0
Q ss_pred HHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHH-HHHcCCH
Q psy17788 195 AASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALA-ENKFGDA 273 (365)
Q Consensus 195 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~-~~~~g~~ 273 (365)
...|++++|+..|++++... |.++.+|..+|.++...|++++|..+|++++...|.+ ..++..+|.+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN---PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN--AELYAALATVLYYQASQH 95 (177)
T ss_dssp C-----CCCCHHHHHHHHHC---CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC--HHHHHHHHHHHHHHTTTC
T ss_pred hhccCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHhcCCc
Confidence 45688999999999999998 9999999999999999999999999999999999985 5677888999 7799998
Q ss_pred --HHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788 274 --SRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ 320 (365)
Q Consensus 274 --e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~ 320 (365)
+.|...|++++..+|++..+|..++.++...|+++.|...|++++..
T Consensus 96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999985
No 131
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.42 E-value=1.3e-11 Score=101.08 Aligned_cols=134 Identities=15% Similarity=0.008 Sum_probs=112.3
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Q psy17788 150 RLNVWTSLLNLEHLYGTKESLQECLHEAVRCND-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCA 228 (365)
Q Consensus 150 ~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a 228 (365)
....|..++..+...|+++.|...|++++...| +..+|..++.++...|++++|+..|++++... |.++.+|..+|
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~a 88 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD---KKYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cccHHHHHHHH
Confidence 456788888888888888999999999888877 45688888999999999999999999999988 88899999999
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17788 229 TLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTS 286 (365)
Q Consensus 229 ~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~ 286 (365)
.++...|++++|..+|++++...|....+......+..+...|++++|...++++...
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 9999999999999999999999888765555555566677888999999888877654
No 132
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.41 E-value=7.7e-11 Score=124.33 Aligned_cols=241 Identities=9% Similarity=0.026 Sum_probs=164.1
Q ss_pred HHHHHHhc-CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccc---------------
Q psy17788 84 QAEDELLQ-NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNE--------------- 147 (365)
Q Consensus 84 ~~e~~l~~-~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~--------------- 147 (365)
+...++.+ ++..+|++.|+++ ++...|+..+.++.+.|++++|..++..|.+..+....
T Consensus 1110 qLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rle 1184 (1630)
T 1xi4_A 1110 QLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLA 1184 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHH
Confidence 44556666 7777999999886 88899999999999999999999999998875543100
Q ss_pred -------cchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc-----
Q psy17788 148 -------EDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAG----- 215 (365)
Q Consensus 148 -------~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~----- 215 (365)
..+..-|..++..+...|.++.|...|.++ ..|..++.+|.+.|+++.|++.+.++.....
T Consensus 1185 ele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~ 1257 (1630)
T 1xi4_A 1185 ELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVC 1257 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHH
Confidence 011233556666667778888888888876 4788889999999999999998887732210
Q ss_pred ----------------C-CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHc--CCHHHH
Q psy17788 216 ----------------Q-THSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKF--GDASRA 276 (365)
Q Consensus 216 ----------------~-~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~--g~~e~A 276 (365)
. ...++.....++.+|.+.|.+++|+.+++.+|...|. |+.++..++.++.+. ++..++
T Consensus 1258 ~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Lera--H~gmftELaiLyaKy~peklmEh 1335 (1630)
T 1xi4_A 1258 FACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERA--HMGMFTELAILYSKFKPQKMREH 1335 (1630)
T ss_pred HHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChh--HhHHHHHHHHHHHhCCHHHHHHH
Confidence 0 0113334445566667777777777777777766654 566666666666654 455566
Q ss_pred HHHHHHHHHhCC-----CChhHHHHHHHHHHhcCChHHHHH-------------HHHHHHhCCCCCCCcHHHHHHHHHHH
Q psy17788 277 QALLEHTLTSYP-----ARVDVWGVYVDMLVKSDRVDLGRQ-------------VIQRAVTQKLPPKKLKPLYMKWLKLE 338 (365)
Q Consensus 277 ~~~fe~~l~~~P-----~~~~~w~~~~~~~~~~g~~~~Ar~-------------~~eral~~~l~~~~~~~~~~~~l~~e 338 (365)
..+|.+.+...| .+..+|..++-+|.+.|+++.|.. .|...+. ...+..++.+-+.|+
T Consensus 1336 lk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~----kv~n~elyykai~Fy 1411 (1630)
T 1xi4_A 1336 LELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT----KVANVELYYRAIQFY 1411 (1630)
T ss_pred HHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc----ccccHHHHHHHHHHH
Confidence 666666665544 566777777777777777777762 2333332 234567777777777
Q ss_pred HhcC
Q psy17788 339 EQYG 342 (365)
Q Consensus 339 ~~~G 342 (365)
..++
T Consensus 1412 l~~~ 1415 (1630)
T 1xi4_A 1412 LEFK 1415 (1630)
T ss_pred HhhC
Confidence 7666
No 133
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.41 E-value=8.5e-12 Score=98.17 Aligned_cols=113 Identities=15% Similarity=0.057 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHH
Q psy17788 185 KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFA 264 (365)
Q Consensus 185 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a 264 (365)
..|..++..+...|++++|+..|+++++.. |.++.+|..+|.++...|++++|...|++++...|.. ..++..+|
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg 79 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA---PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF--VRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc--HHHHHHHH
Confidence 356666777777777777777777777776 7777777777777777777777777777777777764 45566667
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhC------CCChhHHHHHHHHHH
Q psy17788 265 LAENKFGDASRAQALLEHTLTSY------PARVDVWGVYVDMLV 302 (365)
Q Consensus 265 ~~~~~~g~~e~A~~~fe~~l~~~------P~~~~~w~~~~~~~~ 302 (365)
.++...|++++|...|++++..+ |.+..++..+..+..
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 77777777777777777777777 777677666665544
No 134
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.41 E-value=1.3e-11 Score=105.87 Aligned_cols=127 Identities=11% Similarity=0.023 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHH
Q psy17788 186 VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFAL 265 (365)
Q Consensus 186 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~ 265 (365)
.++.++..+...|++++|+..|++++ +.++.+|..+|.++...|++++|...|++++...|.. ..++..+|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~lg~ 79 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL--AVAYFQRGM 79 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--hHHHHHHHH
Confidence 35677899999999999999999885 3478999999999999999999999999999999985 667888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCh----------------hHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788 266 AENKFGDASRAQALLEHTLTSYPARV----------------DVWGVYVDMLVKSDRVDLGRQVIQRAVTQ 320 (365)
Q Consensus 266 ~~~~~g~~e~A~~~fe~~l~~~P~~~----------------~~w~~~~~~~~~~g~~~~Ar~~~eral~~ 320 (365)
++...|++++|...|++++...|.+. .+|..++.++...|+++.|...|++++..
T Consensus 80 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 80 LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 99999999999999999999888876 89999999999999999999999999974
No 135
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.41 E-value=4.7e-12 Score=99.64 Aligned_cols=116 Identities=13% Similarity=0.043 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHH
Q psy17788 185 KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFA 264 (365)
Q Consensus 185 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a 264 (365)
..|..++.++...|++++|+..|++++... |.+..+|..+|.++...|++++|..+|++++...|.. ..++..+|
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~la 91 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRN---PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF--IKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTC---TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC--HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc--hHHHHHHH
Confidence 355555666666666666666666666555 5556666666666666666666666666666655553 34455556
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC
Q psy17788 265 LAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSD 305 (365)
Q Consensus 265 ~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g 305 (365)
.++...|+++.|+..|++++..+|.+..+|..++.++...|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 66666666666666666666666666666666665555444
No 136
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.41 E-value=2.7e-11 Score=110.03 Aligned_cols=170 Identities=9% Similarity=-0.024 Sum_probs=132.3
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCH-------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCC---C
Q psy17788 150 RLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDET-------KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTH---S 219 (365)
Q Consensus 150 ~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---~ 219 (365)
....+...+..+...|+++.|...+.+++...+.. ..+..++.++...|++++|+..|++++....... .
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 34556667777778888999999998888876532 1234567778888899999999999987541111 1
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCCcch--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----
Q psy17788 220 SVNIYLQCATLLLRLGQKDTARHILQRGL---NNLPPAVH--VTLITRFALAENKFGDASRAQALLEHTLTSYPA----- 289 (365)
Q Consensus 220 ~~~~~~~~a~~~~~~g~~~~A~~~l~ral---~~~p~~~~--~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~----- 289 (365)
...++..+|.+|...|++++|..+|++++ ...|.... +.++..+|.++...|++++|..+|++++...++
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence 15688999999999999999999999998 44555432 358888999999999999999999999876543
Q ss_pred -ChhHHHHHHHHHHhcCChHHH-HHHHHHHHh
Q psy17788 290 -RVDVWGVYVDMLVKSDRVDLG-RQVIQRAVT 319 (365)
Q Consensus 290 -~~~~w~~~~~~~~~~g~~~~A-r~~~eral~ 319 (365)
...++..+|.++...|++++| ..+|++|+.
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 267788899999999999999 888999886
No 137
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.40 E-value=4.1e-11 Score=109.10 Aligned_cols=184 Identities=10% Similarity=0.036 Sum_probs=111.3
Q ss_pred ChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy17788 97 SPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHE 176 (365)
Q Consensus 97 a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~r 176 (365)
++..|++.+...+.+...++.++..+...|++++|+.++.+++...|. .....+....+.++...|+.+.|.+.+++
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~---~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEA---EGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCS---TTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC---cCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666677766655555555666666666677777777777766664431 14566666666777777777777777777
Q ss_pred HHHcCC-----CHHHHHHHHHH--HHHhC--CHHHHHHHHHHHHHHhcCCCC--cHHHHHHHHHHHHHcCChHHHHHHHH
Q psy17788 177 AVRCND-----ETKVYMNMMEI--YAASA--QIRDLESTVKLLLKKAGQTHS--SVNIYLQCATLLLRLGQKDTARHILQ 245 (365)
Q Consensus 177 al~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~al~~~~~~~~--~~~~~~~~a~~~~~~g~~~~A~~~l~ 245 (365)
+.+.+| ...+...++.. ....| ++++|..+|+++...+ |+ ++.++++ ++...|++++|...++
T Consensus 162 ~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~---p~~~~~~lLln---~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 162 YTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF---PTWKTQLGLLN---LHLQQRNIAEAQGIVE 235 (310)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS---CSHHHHHHHHH---HHHHHTCHHHHHHHHH
T ss_pred HHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC---CCcccHHHHHH---HHHHcCCHHHHHHHHH
Confidence 666666 24444444433 33334 6777777777766665 44 2222222 5666677777777776
Q ss_pred HHHhcC----------CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q psy17788 246 RGLNNL----------PPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDV 293 (365)
Q Consensus 246 ral~~~----------p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~ 293 (365)
.++... |+ +..++...+.+....|+ .|..+++++...+|+++-+
T Consensus 236 ~l~~~~p~~~~k~~~~p~--~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 236 LLLSDYYSVEQKENAVLY--KPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHSHHHHTTTCHHHHSS--HHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred HHHHhcccccccccCCCC--CHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 555542 43 34555556666666665 6667777777777766443
No 138
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.39 E-value=1.7e-11 Score=93.94 Aligned_cols=112 Identities=13% Similarity=-0.024 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHH
Q psy17788 185 KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFA 264 (365)
Q Consensus 185 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a 264 (365)
..|..++..+...|++++|...|++++... |.++.+|..+|.++...|++++|...+++++...|.. ..++..+|
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~a 79 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD---PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW--GKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc--HHHHHHHH
Confidence 455666677777777777777777777766 6677777777777777777777777777777776663 44556667
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q psy17788 265 LAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDML 301 (365)
Q Consensus 265 ~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~ 301 (365)
.++...|++++|...|++++..+|++..+|..++.+.
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 7777777777777777777777777777776666554
No 139
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.38 E-value=2.9e-11 Score=93.52 Aligned_cols=117 Identities=15% Similarity=0.130 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHH
Q psy17788 184 TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRF 263 (365)
Q Consensus 184 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~ 263 (365)
..+|..++.++...|++++|..+|++++... |.++.+|..++.++...|++++|..+|++++...|.. ..++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l 83 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--AEAWYNL 83 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc--HHHHHHH
Confidence 3466777778888888888888888888776 7778888888888888888888888888888777764 4566677
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC
Q psy17788 264 ALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSD 305 (365)
Q Consensus 264 a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g 305 (365)
|.++...|++++|...|++++...|.+..++..++.++...|
T Consensus 84 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 84 GNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888888888888888888888888888888877777765543
No 140
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.38 E-value=1.6e-11 Score=101.46 Aligned_cols=111 Identities=13% Similarity=-0.064 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHH
Q psy17788 184 TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRF 263 (365)
Q Consensus 184 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~ 263 (365)
...|..++.++...|++++|+..|++++... |.++.+|..+|.++...|++++|+..|++++...|.. ..++..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l 85 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA---PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY--SKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHH
Confidence 3467778888888888888888888888887 8888888888888888888888888888888888885 5677778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHH
Q psy17788 264 ALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVD 299 (365)
Q Consensus 264 a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~ 299 (365)
|.++...|++++|+..|++++..+|++...|...+-
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 888888888888888888888888888886655443
No 141
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.36 E-value=1.8e-11 Score=96.22 Aligned_cols=118 Identities=10% Similarity=-0.019 Sum_probs=102.3
Q ss_pred CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHH
Q psy17788 219 SSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYV 298 (365)
Q Consensus 219 ~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~ 298 (365)
..+..|...|..++..|++++|...|++++...|.+ ..++..+|.++...|++++|...|++++..+|+++.+|..++
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED--ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 457889999999999999999999999999999995 567888899999999999999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCC---CCCCcHHHHHHHHHHH
Q psy17788 299 DMLVKSDRVDLGRQVIQRAVTQKL---PPKKLKPLYMKWLKLE 338 (365)
Q Consensus 299 ~~~~~~g~~~~Ar~~~eral~~~l---~~~~~~~~~~~~l~~e 338 (365)
.++...|++++|...|++++.... ..+....++.......
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 999999999999999999998410 0034555655554443
No 142
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.36 E-value=1e-11 Score=112.49 Aligned_cols=191 Identities=10% Similarity=0.025 Sum_probs=147.7
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Q psy17788 150 RLNVWTSLLNLEHLYGTKESLQECLHEAVRCND-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCA 228 (365)
Q Consensus 150 ~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a 228 (365)
....|..++..+...|+++.|+..|.+++..+| +..+|..++.+|...|++++|+..|+++++.. |.++.+|..+|
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD---GQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC---TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCCHHHHHHHH
Confidence 457788899999999999999999999999988 56788999999999999999999999999988 99999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCcch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC
Q psy17788 229 TLLLRLGQKDTARHILQRGLNNLPPAVH---VTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSD 305 (365)
Q Consensus 229 ~~~~~~g~~~~A~~~l~ral~~~p~~~~---~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g 305 (365)
.++...|++++|...|++++...|.... ..++..+ ....+...........|.+..+...++.+. .|
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~ 149 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--------RIAKKKRWNSIEERRIHQESELHSYLTRLI--AA 149 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--------HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HH
Confidence 9999999999999999999998775421 1111111 112233333344456788888888887776 68
Q ss_pred ChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q psy17788 306 RVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQY-GDAEAVENVKKEIEQ 356 (365)
Q Consensus 306 ~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~-G~~~~a~~v~~kA~~ 356 (365)
++++|...|++++.. .| ....+......+.... |..+.+..++.+|.+
T Consensus 150 ~~~~A~~~~~~al~~--~p-~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 150 ERERELEECQRNHEG--HE-DDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHTTTSGGGTT--TS-CHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHhhhcc--cc-chhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 899999999999974 33 3455555555555554 667778888877653
No 143
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.35 E-value=3.1e-11 Score=94.80 Aligned_cols=121 Identities=12% Similarity=0.001 Sum_probs=108.0
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHH
Q psy17788 218 HSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVY 297 (365)
Q Consensus 218 ~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~ 297 (365)
+.++..|..+|..+...|++++|..+|++++...|.. ..++..+|.++...|++++|...|++++..+|.+..+|..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD--AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC--HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 7788999999999999999999999999999999985 66788889999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCC
Q psy17788 298 VDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGD 343 (365)
Q Consensus 298 ~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~ 343 (365)
+.++...|++++|+.+|++++.. .+....+|..+.......|+
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDL---DSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHhcC
Confidence 99999999999999999999984 23455677777766665553
No 144
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.34 E-value=2.5e-11 Score=94.77 Aligned_cols=120 Identities=11% Similarity=0.014 Sum_probs=59.6
Q ss_pred CCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HHHH
Q psy17788 109 PNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-TKVY 187 (365)
Q Consensus 109 p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~ 187 (365)
|++...|..++..+...|+++.|...|++++...| ....+|..++.++...|+++.|...|++++...|. ..+|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 83 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNP-----ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAY 83 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-----CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHH
Confidence 33445555555555555555555555555555444 33444555555555555555555555555544442 3344
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCC
Q psy17788 188 MNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQ 236 (365)
Q Consensus 188 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~ 236 (365)
..++.++...|++++|...|++++... |.++.+|..++.++...|+
T Consensus 84 ~~~~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 84 GRMGLALSSLNKHVEAVAYYKKALELD---PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHhc
Confidence 444555555555555555555555444 4444455555544444443
No 145
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.34 E-value=1.1e-10 Score=106.07 Aligned_cols=175 Identities=14% Similarity=0.079 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcH------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc----
Q psy17788 186 VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSV------NIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV---- 255 (365)
Q Consensus 186 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~---- 255 (365)
.+...+..+...|++++|.+.|.++++.. +... ..+..++.++...|++++|...|++++...+...
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKE---EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC---CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccc---cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 44556778889999999999999999875 4332 3456678888889999999999999998654321
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCh----hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC---CC
Q psy17788 256 HVTLITRFALAENKFGDASRAQALLEHTL---TSYPARV----DVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLP---PK 325 (365)
Q Consensus 256 ~~~~~~~~a~~~~~~g~~e~A~~~fe~~l---~~~P~~~----~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~---~~ 325 (365)
...++..+|.++...|++++|..+|++++ ...|++. .++..+|.++...|++++|..+|++++..... ..
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence 25688899999999999999999999999 5566643 58899999999999999999999999973110 11
Q ss_pred CcHHHHHHHHHHHHhcCCHHHH-HHHHHHHHHHHHhhhc
Q psy17788 326 KLKPLYMKWLKLEEQYGDAEAV-ENVKKEIEQYVRNSKN 363 (365)
Q Consensus 326 ~~~~~~~~~l~~e~~~G~~~~a-~~v~~kA~~~v~~~~~ 363 (365)
....++...+..+...|+.+.| ...+++|+...+...+
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~ 272 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEM 272 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCc
Confidence 2356788888888999999999 8889999999887655
No 146
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.34 E-value=4e-12 Score=108.50 Aligned_cols=96 Identities=16% Similarity=0.072 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q psy17788 222 NIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDML 301 (365)
Q Consensus 222 ~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~ 301 (365)
.+|..+|.++...|++++|...+++++...|.. ..++..+|.++...|+++.|...|++++..+|++..++..++.++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN--VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 677778888888888888888888888877764 556677788888888888888888888888888888888888887
Q ss_pred HhcCChHHHH-HHHHHHHh
Q psy17788 302 VKSDRVDLGR-QVIQRAVT 319 (365)
Q Consensus 302 ~~~g~~~~Ar-~~~eral~ 319 (365)
...|+..++. ..|.++..
T Consensus 167 ~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 7777666665 44555443
No 147
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.33 E-value=2.9e-13 Score=128.61 Aligned_cols=239 Identities=8% Similarity=-0.004 Sum_probs=116.7
Q ss_pred HHHHHHhc-CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccc---------------
Q psy17788 84 QAEDELLQ-NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNE--------------- 147 (365)
Q Consensus 84 ~~e~~l~~-~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~--------------- 147 (365)
.+.++.++ ++.++|++.|.++ .+...|...+......|++++|+.+++.+++..+....
T Consensus 37 ~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~ 111 (449)
T 1b89_A 37 QLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLA 111 (449)
T ss_dssp -----------------------------------------------------------------------------CHH
T ss_pred HHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHH
Confidence 44445555 7788999999774 35558888888888999999999999988875331000
Q ss_pred -------cchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCc
Q psy17788 148 -------EDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSS 220 (365)
Q Consensus 148 -------~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 220 (365)
..+...|...+..+...|.++.|...|.++ ..|..++.++.+.|++++|.+.|.++ .+
T Consensus 112 e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------~n~~~LA~~L~~Lg~yq~AVea~~KA--------~~ 176 (449)
T 1b89_A 112 ELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGARKA--------NS 176 (449)
T ss_dssp HHTTTTTCC----------------CTTTHHHHHHHT-------TCHHHHHHHHHTTTCHHHHHHHHHHH--------TC
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------hhHHHHHHHHHHhccHHHHHHHHHHc--------CC
Confidence 001124444444444455555555555544 35667777777777777777777766 16
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q psy17788 221 VNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDM 300 (365)
Q Consensus 221 ~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~ 300 (365)
+.+|...+..+...|+++.|..+... |...|. -...++.++.+.|.+++|..+|+.++...|....+|..++-+
T Consensus 177 ~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad-----~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il 250 (449)
T 1b89_A 177 TRTWKEVCFACVDGKEFRLAQMCGLH-IVVHAD-----ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAIL 250 (449)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHH-----HHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHh-----hHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 77888888888888888888554443 223332 234567888999999999999999999999999999999988
Q ss_pred HHhc--CChHHHHHHHHHHHhCCCCCC-----CcHHHHHHHHHHHHhcCCHHHHHHHH
Q psy17788 301 LVKS--DRVDLGRQVIQRAVTQKLPPK-----KLKPLYMKWLKLEEQYGDAEAVENVK 351 (365)
Q Consensus 301 ~~~~--g~~~~Ar~~~eral~~~l~~~-----~~~~~~~~~l~~e~~~G~~~~a~~v~ 351 (365)
+.+. |+..+..+.|...+. + |+ ....+|..+...+..+|+++.|..++
T Consensus 251 ~~ky~p~k~~ehl~~~~~~in--i-~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 251 YSKFKPQKMREHLELFWSRVN--I-PKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHTTCHHHHHHHHHHHSTTSC--H-HHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHhc--C-cHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 8765 456666666665543 2 23 34568999999999999998776543
No 148
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.33 E-value=1.2e-10 Score=105.79 Aligned_cols=164 Identities=9% Similarity=-0.055 Sum_probs=110.3
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcCCCHH-------HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCc---HHHHH
Q psy17788 156 SLLNLEHLYGTKESLQECLHEAVRCNDETK-------VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSS---VNIYL 225 (365)
Q Consensus 156 ~~~~l~~~~g~~~~a~~v~~ral~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~ 225 (365)
..+......|+++.|..++++++...+... .+..++.++...|++++|+..|++++......+.. ..++.
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 334556677788888888888877554211 12245666667778888888888888754211111 34677
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhc---CCCc--chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------hhHH
Q psy17788 226 QCATLLLRLGQKDTARHILQRGLNN---LPPA--VHVTLITRFALAENKFGDASRAQALLEHTLTSYPAR------VDVW 294 (365)
Q Consensus 226 ~~a~~~~~~g~~~~A~~~l~ral~~---~p~~--~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~------~~~w 294 (365)
.+|.+|...|++++|..+|++++.. .|.. ..+.++..+|.++.+.|++++|..+|++++...+.. ..++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 7888888888888888888888753 1111 124466777888888888888888888887754432 5677
Q ss_pred HHHHHHHHhcCC-hHHHHHHHHHHHh
Q psy17788 295 GVYVDMLVKSDR-VDLGRQVIQRAVT 319 (365)
Q Consensus 295 ~~~~~~~~~~g~-~~~Ar~~~eral~ 319 (365)
..+|.++.+.|+ +++|...|++|+.
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 777888888874 4788888887775
No 149
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.32 E-value=2.8e-11 Score=103.23 Aligned_cols=119 Identities=14% Similarity=0.078 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCH-----------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q psy17788 151 LNVWTSLLNLEHLYGTKESLQECLHEAVRCNDET-----------------KVYMNMMEIYAASAQIRDLESTVKLLLKK 213 (365)
Q Consensus 151 ~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~-----------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 213 (365)
...|...+..+...|+++.|+..|.+++...|.. .+|..++.+|...|++++|+..|++++..
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3444444444455555555555555555444321 34444455555555555555555555554
Q ss_pred hcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHH
Q psy17788 214 AGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDAS 274 (365)
Q Consensus 214 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e 274 (365)
. |.++.+|+.+|.++...|++++|...|++++...|.. ..++..++.++...|+..
T Consensus 118 ~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~ 173 (198)
T 2fbn_A 118 D---KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN--LDIRNSYELCVNKLKEAR 173 (198)
T ss_dssp S---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHHHHHH
T ss_pred C---cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc--HHHHHHHHHHHHHHHHHH
Confidence 4 4455555555555555555555555555555555443 223333444444444333
No 150
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.31 E-value=4.4e-11 Score=94.85 Aligned_cols=101 Identities=10% Similarity=0.064 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcch-----HHHH
Q psy17788 186 VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVH-----VTLI 260 (365)
Q Consensus 186 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~-----~~~~ 260 (365)
++..++..+.+.|++++|+..|++++... |.++.+|..+|.++...|++++|+..|++++...|.... ..++
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~---p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD---PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 45566677777777777777777777766 667777777777777777777777777777766544221 2355
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17788 261 TRFALAENKFGDASRAQALLEHTLTSYPA 289 (365)
Q Consensus 261 ~~~a~~~~~~g~~e~A~~~fe~~l~~~P~ 289 (365)
..+|.++...|+++.|+..|++++..+|+
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 56666666666666666666666666654
No 151
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.31 E-value=4.4e-11 Score=95.04 Aligned_cols=100 Identities=17% Similarity=0.048 Sum_probs=55.4
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHH
Q psy17788 218 HSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVY 297 (365)
Q Consensus 218 ~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~ 297 (365)
+.++..|..+|..+...|++++|..+|++++...|.. ..++..+|.++...|+++.|...|++++..+|+++.+|..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV--AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 4445555555555555555555555555555555553 33445555555555555555555555555555555555555
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q psy17788 298 VDMLVKSDRVDLGRQVIQRAVT 319 (365)
Q Consensus 298 ~~~~~~~g~~~~Ar~~~eral~ 319 (365)
+.++...|+++.|...|++++.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 5555555555555555555554
No 152
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.31 E-value=6e-11 Score=97.92 Aligned_cols=116 Identities=9% Similarity=0.023 Sum_probs=84.8
Q ss_pred chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHH
Q psy17788 149 DRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQC 227 (365)
Q Consensus 149 ~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 227 (365)
.....|..++..+...|+++.|+..|++++..+| +..+|..++.+|...|++++|+..|++++... |.++.+|..+
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l 85 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD---PKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCCHHHHHHH
Confidence 3456677777777777777777777777777776 44577777788888888888888888888877 7778888888
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Q psy17788 228 ATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAE 267 (365)
Q Consensus 228 a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~ 267 (365)
|.++...|++++|+..|++++...|.+....+...+..+.
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 125 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTK 125 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 8888888888888888888888777766544444444433
No 153
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.31 E-value=2.1e-11 Score=95.86 Aligned_cols=97 Identities=14% Similarity=0.049 Sum_probs=44.2
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Q psy17788 188 MNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAE 267 (365)
Q Consensus 188 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~ 267 (365)
+.++..+.+.|++++|+..|+++++.. |.++.+|..+|.++...|++++|+..|++++...|.+ ..++..+|.++
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~--~~~~~~la~~~ 95 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE---PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD--IAVHAALAVSH 95 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Confidence 334444444444444444444444444 4444444444444444444444444444444444442 23334444444
Q ss_pred HHcCCHHHHHHHHHHHHHhCCC
Q psy17788 268 NKFGDASRAQALLEHTLTSYPA 289 (365)
Q Consensus 268 ~~~g~~e~A~~~fe~~l~~~P~ 289 (365)
...|++++|+..|++++..+|+
T Consensus 96 ~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC----
T ss_pred HHcCCHHHHHHHHHHHHHhCcC
Confidence 4444444444444444444444
No 154
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.30 E-value=1.6e-10 Score=89.20 Aligned_cols=113 Identities=12% Similarity=0.146 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HHHHHHH
Q psy17788 112 SELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-TKVYMNM 190 (365)
Q Consensus 112 ~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~~~l 190 (365)
..+|..++..+...|++++|..+|++++...| ....+|..++.++...|+++.|..+|++++...|. ..+|..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 83 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-----NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL 83 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-----CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence 44555555555555555555555555555444 23344444444444444444444444444444332 2344444
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q psy17788 191 MEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLL 232 (365)
Q Consensus 191 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~ 232 (365)
+.++...|++++|...|++++... |.++.++..++.++.
T Consensus 84 a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 84 GNAYYKQGDYDEAIEYYQKALELD---PNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHH
Confidence 444444444444444444444444 444444444444433
No 155
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.30 E-value=1.8e-10 Score=104.52 Aligned_cols=170 Identities=14% Similarity=0.090 Sum_probs=101.2
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHH------HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcch----HHHH
Q psy17788 191 MEIYAASAQIRDLESTVKLLLKKAGQTHSSVN------IYLQCATLLLRLGQKDTARHILQRGLNNLPPAVH----VTLI 260 (365)
Q Consensus 191 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~----~~~~ 260 (365)
+..+...|++++|..+|+++++.. +..+. .+..++.++...|++++|...|++++...+.... +.++
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKE---EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC---CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccc---cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 445566677777777777776654 32222 2333666666666777777777777764332221 3456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh---C----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC---CCCCcHHH
Q psy17788 261 TRFALAENKFGDASRAQALLEHTLTS---Y----PARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKL---PPKKLKPL 330 (365)
Q Consensus 261 ~~~a~~~~~~g~~e~A~~~fe~~l~~---~----P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l---~~~~~~~~ 330 (365)
..+|.++...|+++.|..+|++++.. . |....++..++.++.+.|++++|..+|++++.... .......+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 66677777777777777777777631 1 12244566677777777777777777777765210 01122455
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhhhc
Q psy17788 331 YMKWLKLEEQYG-DAEAVENVKKEIEQYVRNSKN 363 (365)
Q Consensus 331 ~~~~l~~e~~~G-~~~~a~~v~~kA~~~v~~~~~ 363 (365)
+...+..+...| +.+.|...+++|+...+..++
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~ 272 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASFFFDILEM 272 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence 666666666666 356777777777776665544
No 156
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.29 E-value=1.7e-10 Score=88.27 Aligned_cols=114 Identities=17% Similarity=0.096 Sum_probs=102.1
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHH
Q psy17788 220 SVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVD 299 (365)
Q Consensus 220 ~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~ 299 (365)
.+..|..+|..+...|++++|..+|++++...|.+ ..++..+|.++...|+++.|...|++++..+|.+..+|..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN--HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc--HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 46789999999999999999999999999999985 5677888999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHH
Q psy17788 300 MLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLE 338 (365)
Q Consensus 300 ~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e 338 (365)
++...|++++|+.+|++++.. . +....+|..+..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~--~-~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKH--E-ANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT--C-TTCHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHc--C-CCCHHHHHHHHHhh
Confidence 999999999999999999974 3 34566776666554
No 157
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=8.4e-11 Score=94.24 Aligned_cols=110 Identities=13% Similarity=0.030 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHH
Q psy17788 186 VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSS---VNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITR 262 (365)
Q Consensus 186 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~ 262 (365)
.|..++..+...|++++|+..|++++... |.+ ..+|..++.++...|++++|...|++++...|.. ..++..
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~ 104 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGLD---ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD--VKALYR 104 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC--HHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHc---ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC--HHHHHH
Confidence 34444444444444444444444444443 333 4444444444444444444444444444444442 333344
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q psy17788 263 FALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDM 300 (365)
Q Consensus 263 ~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~ 300 (365)
+|.++...|++++|...|++++..+|++..+|..+..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 44444445555555555555555555444444444444
No 158
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.28 E-value=1.7e-10 Score=90.58 Aligned_cols=113 Identities=13% Similarity=0.067 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcH---HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcch-HHHHHH
Q psy17788 187 YMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSV---NIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVH-VTLITR 262 (365)
Q Consensus 187 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~-~~~~~~ 262 (365)
++.++..+...|++++|+..|+++++.+ |.++ .+|..+|.++...|++++|...|++++...|.... ..++..
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY---PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC---SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC---CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHH
Confidence 4566777788888888888888888877 6665 78888888888888888888888888888777532 345667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q psy17788 263 FALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLV 302 (365)
Q Consensus 263 ~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~ 302 (365)
+|.++...|+++.|+..|++++..+|++..+......+..
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~ 121 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQS 121 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 7888888888888888888888888887766665554443
No 159
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.28 E-value=5.8e-11 Score=94.28 Aligned_cols=117 Identities=11% Similarity=-0.016 Sum_probs=106.4
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHH
Q psy17788 183 ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITR 262 (365)
Q Consensus 183 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~ 262 (365)
....|..++..+...|++++|...|++++... |.++.+|..+|.++...|++++|...|++++...|.. ..++..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~ 82 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN---PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS--VKAHFF 82 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC---cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh--HHHHHH
Confidence 56789999999999999999999999999998 9999999999999999999999999999999999985 667888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-----ChhHHHHHHHHHHhc
Q psy17788 263 FALAENKFGDASRAQALLEHTLTSYPA-----RVDVWGVYVDMLVKS 304 (365)
Q Consensus 263 ~a~~~~~~g~~e~A~~~fe~~l~~~P~-----~~~~w~~~~~~~~~~ 304 (365)
+|.++...|+++.|...|++++...|+ +..++..+..+..+.
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~ 129 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR 129 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999988 667777776665443
No 160
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.27 E-value=6.3e-11 Score=97.58 Aligned_cols=113 Identities=13% Similarity=0.052 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH------------------hcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy17788 186 VYMNMMEIYAASAQIRDLESTVKLLLKK------------------AGQTHSSVNIYLQCATLLLRLGQKDTARHILQRG 247 (365)
Q Consensus 186 ~~~~l~~~~~~~g~~~~A~~~~~~al~~------------------~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ra 247 (365)
.+...+..+.+.|++++|+..|.+++.. . |.+..+|..+|.++...|++++|+..++++
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELD---RKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHH---HTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHH---HHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4555666666677777777777777665 4 667788888999999999999999999999
Q ss_pred HhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-hHHHHHHHHHHh
Q psy17788 248 LNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARV-DVWGVYVDMLVK 303 (365)
Q Consensus 248 l~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~-~~w~~~~~~~~~ 303 (365)
|...|.. +..+...|.++...|+++.|...|++++..+|++. .++..+..+..+
T Consensus 90 l~~~p~~--~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~ 144 (162)
T 3rkv_A 90 LKREETN--EKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTER 144 (162)
T ss_dssp HHHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HhcCCcc--hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 9888885 66778888888899999999999999999999887 556666555443
No 161
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=1.7e-10 Score=92.44 Aligned_cols=121 Identities=18% Similarity=0.086 Sum_probs=107.5
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHH
Q psy17788 218 HSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVH-VTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGV 296 (365)
Q Consensus 218 ~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~-~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~ 296 (365)
+.+...|...|..+...|++++|..+|++++...|.... ..++..+|.++...|++++|...|++++..+|++..+|..
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 678999999999999999999999999999999987421 5678889999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhc
Q psy17788 297 YVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQY 341 (365)
Q Consensus 297 ~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~ 341 (365)
++.++...|++++|+.+|++++.. .+....+|..+..+....
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~ 146 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL---EPKNKVFQEALRNISGPS 146 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHCSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHhhc
Confidence 999999999999999999999984 345677787777765443
No 162
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.27 E-value=8.2e-11 Score=117.00 Aligned_cols=172 Identities=10% Similarity=0.034 Sum_probs=137.6
Q ss_pred CCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccC----------HHHHHHHHHHHHhhccCccccchHHHHHHHHHHHH
Q psy17788 93 GEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATE----------IEKARSIARRALTVINIRNEEDRLNVWTSLLNLEH 162 (365)
Q Consensus 93 ~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~----------~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~ 162 (365)
..++|+..+++++..+|++..+|...+.+....++ ++++...+++++...| .+..+|.....+..
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-----K~y~aW~hR~w~l~ 118 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-----KSYGTWHHRCWLLS 118 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHH
Confidence 34488999999999999999999999999988877 8899999999999888 67888988888888
Q ss_pred HhC--CHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHc----
Q psy17788 163 LYG--TKESLQECLHEAVRCND-ETKVYMNMMEIYAASA-QIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRL---- 234 (365)
Q Consensus 163 ~~g--~~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~---- 234 (365)
..| .++++...+.++++.+| +..+|...+.+....| .++++.+.++++++.. |.+..+|...+.++...
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~---p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN---FSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT---CCCHHHHHHHHHHHHHHSCCC
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC---CCCccHHHHHHHHHHhhcccc
Confidence 888 66888888888888887 4578888787888888 7888888888888887 88888888888887774
Q ss_pred ----------CChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHH
Q psy17788 235 ----------GQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDAS 274 (365)
Q Consensus 235 ----------g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e 274 (365)
+.++++..++.+|+...|.+..++.+. +-++.+.|.++
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~--~~ll~~~~~~~ 243 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYH--RWLLGRAEPHD 243 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHH--HHHHSCCCCCS
T ss_pred cccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHH--HHHHhcCCCcc
Confidence 345777778888887788766555443 55555555433
No 163
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.26 E-value=1.1e-10 Score=98.83 Aligned_cols=156 Identities=14% Similarity=0.087 Sum_probs=116.0
Q ss_pred HhCCHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCC---CCcHHHHHHHHHHHHHcCCh
Q psy17788 163 LYGTKESLQECLHEAVRCND--ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQT---HSSVNIYLQCATLLLRLGQK 237 (365)
Q Consensus 163 ~~g~~~~a~~v~~ral~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~a~~~~~~g~~ 237 (365)
..|+++.|..+++.... .| ...++..++.++...|++++|...|++++..+... +....++..+|.++...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45788888885554443 33 34577888889999999999999999998854211 34567788889999999999
Q ss_pred HHHHHHHHHHHhc---CCCc--chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------hhHHHHHHHHHHhcCC
Q psy17788 238 DTARHILQRGLNN---LPPA--VHVTLITRFALAENKFGDASRAQALLEHTLTSYPAR------VDVWGVYVDMLVKSDR 306 (365)
Q Consensus 238 ~~A~~~l~ral~~---~p~~--~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~------~~~w~~~~~~~~~~g~ 306 (365)
++|..++++++.. .+.. ....++..+|.++...|++++|...|++++...+.. ..++..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 9999999998887 4422 235567788888888999999999999988654322 2335778888888899
Q ss_pred hHHHHHHHHHHHh
Q psy17788 307 VDLGRQVIQRAVT 319 (365)
Q Consensus 307 ~~~Ar~~~eral~ 319 (365)
+++|+.+|++++.
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998888876
No 164
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.26 E-value=2.3e-10 Score=96.96 Aligned_cols=167 Identities=10% Similarity=-0.009 Sum_probs=125.3
Q ss_pred HcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-------CHHHHHHHHHHHH
Q psy17788 123 LQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND-------ETKVYMNMMEIYA 195 (365)
Q Consensus 123 ~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~-------~~~~~~~l~~~~~ 195 (365)
+..|++++|..+++.... .|. ....+|..++.++...|+++.|...|++++.... ...++..++.+|.
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 77 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPA----TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVER 77 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STT----THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhcC-ChH----HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 467899999988876655 442 4578888889999999999999999999987421 2346788899999
Q ss_pred HhCCHHHHHHHHHHHHHHhcCCC----CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--cc--hHHHHHHHHHHH
Q psy17788 196 ASAQIRDLESTVKLLLKKAGQTH----SSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPP--AV--HVTLITRFALAE 267 (365)
Q Consensus 196 ~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~--~~--~~~~~~~~a~~~ 267 (365)
..|++++|...|++++..+...+ ....++..+|.++...|++++|..++++++...+. .. ...++..+|.++
T Consensus 78 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 157 (203)
T 3gw4_A 78 MAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLA 157 (203)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 99999999999999998742113 23467888999999999999999999999876432 21 234567788899
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCChhHH
Q psy17788 268 NKFGDASRAQALLEHTLTSYPARVDVW 294 (365)
Q Consensus 268 ~~~g~~e~A~~~fe~~l~~~P~~~~~w 294 (365)
...|++++|...|++++.......+.+
T Consensus 158 ~~~g~~~~A~~~~~~al~~~~~~~~~~ 184 (203)
T 3gw4_A 158 QQEKNLLEAQQHWLRARDIFAELEDSE 184 (203)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHCcCHHHHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999986655443333
No 165
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.24 E-value=5.3e-10 Score=111.15 Aligned_cols=172 Identities=8% Similarity=0.018 Sum_probs=152.0
Q ss_pred HHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Q psy17788 128 IEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGT----------KESLQECLHEAVRCND-ETKVYMNMMEIYAA 196 (365)
Q Consensus 128 ~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~----------~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~ 196 (365)
.++|...+++++...| ++..+|.....+....|. ++++...+.+++..+| +..+|.+-+-++.+
T Consensus 45 ~eeal~~~~~~l~~nP-----~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 45 DESVLELTSQILGANP-----DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 119 (567)
T ss_dssp SHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCc-----hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4678999999999999 889999988888777777 8999999999999998 46799999999999
Q ss_pred hC--CHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHc---
Q psy17788 197 SA--QIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLG-QKDTARHILQRGLNNLPPAVHVTLITRFALAENKF--- 270 (365)
Q Consensus 197 ~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g-~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~--- 270 (365)
.| +++++++.++++++.. |.+..+|...+.++...| .++++...+.++++.+|.+.. .|...+.++...
T Consensus 120 l~~~~~~~el~~~~k~l~~d---~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~s--aW~~r~~ll~~l~~~ 194 (567)
T 1dce_A 120 LPEPNWARELELCARFLEAD---ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS--SWHYRSCLLPQLHPQ 194 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHH--HHHHHHHHHHHHSCC
T ss_pred cccccHHHHHHHHHHHHhhc---cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCcc--HHHHHHHHHHhhccc
Confidence 99 6799999999999999 999999999999999999 899999999999999999755 445556666653
Q ss_pred -----------CCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHH
Q psy17788 271 -----------GDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDL 309 (365)
Q Consensus 271 -----------g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~ 309 (365)
+.++++..++.+++..+|++..+|..+..++...|...+
T Consensus 195 ~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 195 PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557899999999999999999999999999988887555
No 166
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.24 E-value=1.1e-11 Score=120.19 Aligned_cols=149 Identities=11% Similarity=0.037 Sum_probs=120.5
Q ss_pred CHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCc---------------HHHHHHHHH
Q psy17788 166 TKESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSS---------------VNIYLQCAT 229 (365)
Q Consensus 166 ~~~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------------~~~~~~~a~ 229 (365)
+++.|...|+.++...|. ...|..++..+.+.|++++|+..|++++... |.+ ..+|.++|.
T Consensus 249 ~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~---p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL---EMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---TTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh---cccccCChHHHHHHHHHHHHHHHHHHH
Confidence 445666666666665553 3577888999999999999999999999988 777 689999999
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHH
Q psy17788 230 LLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDL 309 (365)
Q Consensus 230 ~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~ 309 (365)
++.+.|++++|+..|+++|...|.+ +..+..+|.++...|++++|+..|++++..+|++..+|..++.++...|+..+
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSAN--EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCcc--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999985 66788889999999999999999999999999999999999999998888876
Q ss_pred HH-HHHHHHHh
Q psy17788 310 GR-QVIQRAVT 319 (365)
Q Consensus 310 Ar-~~~eral~ 319 (365)
+. ..|.+++.
T Consensus 404 a~~~~~~~~f~ 414 (457)
T 1kt0_A 404 RDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHh
Confidence 65 45666554
No 167
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.24 E-value=3.3e-11 Score=117.52 Aligned_cols=171 Identities=12% Similarity=0.030 Sum_probs=127.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHH
Q psy17788 187 YMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALA 266 (365)
Q Consensus 187 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~ 266 (365)
|..++..+.+.|++++|+..|+++++.. |.++.+|..+|.++...|++++|...|+++++..|.. ..++..+|.+
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~--~~~~~~lg~~ 83 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELN---PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY--IKGYYRRAAS 83 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC--HHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC--HHHHHHHHHH
Confidence 3445566777889999999999999887 8889999999999999999999999999999988875 5677888999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHH--HHhcCChHHHHHHHH-----------HHHhCCCC---C-----C
Q psy17788 267 ENKFGDASRAQALLEHTLTSYPARVDVWGVYVDM--LVKSDRVDLGRQVIQ-----------RAVTQKLP---P-----K 325 (365)
Q Consensus 267 ~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~--~~~~g~~~~Ar~~~e-----------ral~~~l~---~-----~ 325 (365)
+...|++++|...|+++++.+|++..+|..++.+ +.+.|++++|..+++ +++...-. + .
T Consensus 84 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~ 163 (477)
T 1wao_1 84 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGK 163 (477)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCGGGS
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccccccccccc
Confidence 9999999999999999999999988888888887 778888999999988 66652110 0 0
Q ss_pred CcHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHhhh
Q psy17788 326 KLKPLYMKWLKLEEQYG--DAEAVENVKKEIEQYVRNSK 362 (365)
Q Consensus 326 ~~~~~~~~~l~~e~~~G--~~~~a~~v~~kA~~~v~~~~ 362 (365)
.....+..++...+..+ ....+..++.+|.+.+.+.-
T Consensus 164 itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~~e~ 202 (477)
T 1wao_1 164 VTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLS 202 (477)
T ss_dssp CCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHTSC
T ss_pred ccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHccCC
Confidence 12344555555544444 46667778888888877643
No 168
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.24 E-value=1.3e-10 Score=90.70 Aligned_cols=115 Identities=8% Similarity=-0.036 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc-h----HHH
Q psy17788 185 KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV-H----VTL 259 (365)
Q Consensus 185 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~-~----~~~ 259 (365)
..|..++.++...|++++|...|++++... |.++.+|..+|.++...|++++|..+|++++...|... . ..+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD---PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 355666677777777777777777777766 66677777777777777777777777777776655321 1 445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHh
Q psy17788 260 ITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVK 303 (365)
Q Consensus 260 ~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~ 303 (365)
+..+|.++...|+++.|...|++++...| +..++..++.+...
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 66667777777777777777777777766 46666666655443
No 169
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.24 E-value=1.2e-10 Score=92.31 Aligned_cols=100 Identities=9% Similarity=0.036 Sum_probs=90.4
Q ss_pred CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-------
Q psy17788 219 SSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARV------- 291 (365)
Q Consensus 219 ~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~------- 291 (365)
....++..+|..+++.|++++|+..|++|+...|.. ..++..+|.++...|++++|+..|++++..+|+..
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~--~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a 83 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN--ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIA 83 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHH
Confidence 456778899999999999999999999999999985 66888999999999999999999999999888764
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788 292 DVWGVYVDMLVKSDRVDLGRQVIQRAVTQ 320 (365)
Q Consensus 292 ~~w~~~~~~~~~~g~~~~Ar~~~eral~~ 320 (365)
.++..+|.++...|+++.|+..|++++..
T Consensus 84 ~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 84 KAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46778889999999999999999999974
No 170
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=99.23 E-value=1.6e-10 Score=91.93 Aligned_cols=115 Identities=14% Similarity=0.138 Sum_probs=97.8
Q ss_pred CCcHHHHHHHHHHHHHcCCh------HHHHHHHHHHHhcCCCcch------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17788 218 HSSVNIYLQCATLLLRLGQK------DTARHILQRGLNNLPPAVH------VTLITRFALAENKFGDASRAQALLEHTLT 285 (365)
Q Consensus 218 ~~~~~~~~~~a~~~~~~g~~------~~A~~~l~ral~~~p~~~~------~~~~~~~a~~~~~~g~~e~A~~~fe~~l~ 285 (365)
|.+++.|..|+..+...|++ ++.+.+|+||+...|...+ +.+|..||.+ ...+++++|+.+|+.++.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHH
Confidence 88999999999999999999 8999999999998876443 7788899988 466999999999999999
Q ss_pred hCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHH
Q psy17788 286 SYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLK 336 (365)
Q Consensus 286 ~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~ 336 (365)
.+.+...+|..|+.+++++|+...||.++.+|+.. . ++...++...+.
T Consensus 89 ~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~--~-~k~~~~le~a~~ 136 (161)
T 4h7y_A 89 NCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVER--G-AVPLEMLEIALR 136 (161)
T ss_dssp HCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--T-CBCHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--C-CCcHHHHHHHHH
Confidence 88888899999999999999999999999999984 3 334555554444
No 171
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.21 E-value=2.4e-10 Score=110.81 Aligned_cols=152 Identities=9% Similarity=0.031 Sum_probs=125.2
Q ss_pred cccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCH----------------HHH
Q psy17788 124 QATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDET----------------KVY 187 (365)
Q Consensus 124 ~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~----------------~~~ 187 (365)
..+++++|...|++++...| .....|..+++.+...|+++.|+..|.+|+..+|.. .+|
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~-----~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~ 320 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKL-----EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAF 320 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHH-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHH-----HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHH
Confidence 44566677777777777666 677889999999999999999999999999988753 788
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Q psy17788 188 MNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAE 267 (365)
Q Consensus 188 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~ 267 (365)
..++.+|.+.|++++|+..|++++... |.++.+|+.+|.++...|++++|+..|++++...|.+. .++..++.++
T Consensus 321 ~nla~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~--~a~~~l~~~~ 395 (457)
T 1kt0_A 321 LNLAMCYLKLREYTKAVECCDKALGLD---SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK--AARLQISMCQ 395 (457)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------CHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHH
Confidence 999999999999999999999999998 99999999999999999999999999999999999864 4667778898
Q ss_pred HHcCCHHHHH-HHHHHHHH
Q psy17788 268 NKFGDASRAQ-ALLEHTLT 285 (365)
Q Consensus 268 ~~~g~~e~A~-~~fe~~l~ 285 (365)
...|+.+++. .+|.+++.
T Consensus 396 ~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 396 KKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 8888887664 44555443
No 172
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.21 E-value=1.3e-10 Score=88.20 Aligned_cols=101 Identities=13% Similarity=0.085 Sum_probs=85.2
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChhHHH
Q psy17788 218 HSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPA--RVDVWG 295 (365)
Q Consensus 218 ~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~--~~~~w~ 295 (365)
|.++.+|..+|..+...|++++|..+|++++...|.. ..++..+|.++...|++++|...|++++..+|. +..+|.
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 80 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE--SKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA 80 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence 6677888888888888888888888888888888874 556677788888888888888888888888888 888888
Q ss_pred HHHHHHHhc-CChHHHHHHHHHHHhC
Q psy17788 296 VYVDMLVKS-DRVDLGRQVIQRAVTQ 320 (365)
Q Consensus 296 ~~~~~~~~~-g~~~~Ar~~~eral~~ 320 (365)
.++.++... |++++|..+|++++..
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 888888888 8888888888888873
No 173
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.21 E-value=1.2e-10 Score=91.45 Aligned_cols=97 Identities=10% Similarity=0.061 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q psy17788 222 NIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDML 301 (365)
Q Consensus 222 ~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~ 301 (365)
..|+..|..+...|++++|...|++++...|.+ ..++..+|.++...|++++|...|++++..+|++..+|..++.++
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~--~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPER--EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 95 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 458889999999999999999999999999995 667788899999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhC
Q psy17788 302 VKSDRVDLGRQVIQRAVTQ 320 (365)
Q Consensus 302 ~~~g~~~~Ar~~~eral~~ 320 (365)
...|++++|+..|++++..
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999974
No 174
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.19 E-value=3.7e-09 Score=96.26 Aligned_cols=177 Identities=9% Similarity=0.047 Sum_probs=142.0
Q ss_pred HHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHhCCHHHHHHHH
Q psy17788 131 ARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND---ETKVYMNMMEIYAASAQIRDLESTV 207 (365)
Q Consensus 131 A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~ 207 (365)
|+..+++.+...+ .....+..++.++...|+++.|+.++.+++...| ...++...+.++.+.|+.+.|++.+
T Consensus 85 a~~~l~~l~~~~~-----~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l 159 (310)
T 3mv2_B 85 NIEELENLLKDKQ-----NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIF 159 (310)
T ss_dssp CCHHHHHTTTTSC-----CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcCC-----CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 7888888877433 2234456788888889999999999999998875 4568888899999999999999999
Q ss_pred HHHHHHhcCCCC----cHHHHHHHHHH--HHHcC--ChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHH
Q psy17788 208 KLLLKKAGQTHS----SVNIYLQCATL--LLRLG--QKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQAL 279 (365)
Q Consensus 208 ~~al~~~~~~~~----~~~~~~~~a~~--~~~~g--~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~ 279 (365)
+++.+.. |. +-.+.+.++.. .+..| ++..|..+|+.+....|......++.. ++.+.|++++|...
T Consensus 160 ~~~~~~~---~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~ 233 (310)
T 3mv2_B 160 DNYTNAI---EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGI 233 (310)
T ss_dssp HHHHHHS---CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHH
T ss_pred HHHHhcC---ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHH
Confidence 9998874 41 34555666555 55555 899999999999888886222334443 78899999999999
Q ss_pred HHHHHHhC----------CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788 280 LEHTLTSY----------PARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ 320 (365)
Q Consensus 280 fe~~l~~~----------P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~ 320 (365)
++.+++.+ |+++++....+.+....|+ .|..+++++...
T Consensus 234 L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 234 VELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 99888764 8899999999988888887 889999999984
No 175
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=99.18 E-value=3.9e-10 Score=89.76 Aligned_cols=115 Identities=13% Similarity=0.161 Sum_probs=88.2
Q ss_pred hcCCCCHHHHHHHHHHHHcccCH------HHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy17788 106 LGQPNNSELWVKYMAYHLQATEI------EKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVR 179 (365)
Q Consensus 106 ~~~p~~~~~w~~~~~~~~~~~~~------e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~ 179 (365)
...|+|.+.|..|+....+.|+. ++.+.+|+||+...|+. ....|-.|+.+
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~----k~~~wrrYI~L------------------- 63 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPD----KYGQNESFARI------------------- 63 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGG----GGTTCHHHHHH-------------------
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCcc----ccccHHHHHHH-------------------
Confidence 35788888888888888888887 88888888888888764 13345544443
Q ss_pred cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc
Q psy17788 180 CNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPA 254 (365)
Q Consensus 180 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~ 254 (365)
|..++.+ ...++.++|+++|+.+++.. ...+.+|+.+|+|+.++|+...|+.++.+|+...|..
T Consensus 64 -------WIrYA~~-~ei~D~d~aR~vy~~a~~~h---KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 64 -------QVRFAEL-KAIQEPDDARDYFQMARANC---KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp -------HHHHHHH-HHHHCGGGCHHHHHHHHHHC---TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred -------HHHHHHH-HHhcCHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 3444433 34478889999999998864 7779999999999999999999999999999988874
No 176
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.17 E-value=2.3e-09 Score=101.90 Aligned_cols=206 Identities=10% Similarity=0.022 Sum_probs=151.3
Q ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHhhccCcccc------------chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Q psy17788 114 LWVKYMAYHLQATEIEKARSIARRALTVINIRNEE------------DRLNVWTSLLNLEHLYGTKESLQECLHEAVRCN 181 (365)
Q Consensus 114 ~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~------------~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~ 181 (365)
.-+.-+.-+.+.|++++|...|.++++..|..... ....+...++.++...|+++.|...+.+++...
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~ 85 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM 85 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 34666777889999999999999999977754221 123456777888888889999999888887764
Q ss_pred CC---H----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcC---CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q psy17788 182 DE---T----KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQ---THSSVNIYLQCATLLLRLGQKDTARHILQRGLNNL 251 (365)
Q Consensus 182 ~~---~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~ 251 (365)
+. . .+...++.++...|+++.+..+++.++..... ......++..+|.++...|++++|..++++++...
T Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 165 (434)
T 4b4t_Q 86 MQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREF 165 (434)
T ss_dssp HTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 42 1 13344566666678888999998888876421 13346788888999999999999988888887653
Q ss_pred C----CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---C----hhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788 252 P----PAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPA---R----VDVWGVYVDMLVKSDRVDLGRQVIQRAVT 319 (365)
Q Consensus 252 p----~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~---~----~~~w~~~~~~~~~~g~~~~Ar~~~eral~ 319 (365)
. ....+.++...+.++...|++++|+.+|++++...|. . ..++...+.++...|++..|...|..++.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 166 KKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp TTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2 2234667778888888889999999998888875332 2 24456667777788888888888888876
No 177
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.17 E-value=4.2e-10 Score=106.04 Aligned_cols=122 Identities=12% Similarity=0.036 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH----------------HhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy17788 186 VYMNMMEIYAASAQIRDLESTVKLLLK----------------KAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLN 249 (365)
Q Consensus 186 ~~~~l~~~~~~~g~~~~A~~~~~~al~----------------~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~ 249 (365)
.|..++..+.+.|++++|+..|+++++ .. +.+..+|..+|.++...|++++|+..+++++.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~---~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ---PVALSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH---HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 466777788888888888888888887 44 66788999999999999999999999999999
Q ss_pred cCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHH
Q psy17788 250 NLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQ 312 (365)
Q Consensus 250 ~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~ 312 (365)
..|.. ..++..+|.++...|++++|...|++++..+|++..++..++.++...++.+++..
T Consensus 302 ~~p~~--~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 302 IDPSN--TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCchh--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 98874 66778889999999999999999999999999999999999988888776665543
No 178
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.16 E-value=2e-10 Score=87.10 Aligned_cols=103 Identities=10% Similarity=-0.001 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHH
Q psy17788 185 KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFA 264 (365)
Q Consensus 185 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a 264 (365)
.+|..++.++...|++++|...|+++++.. |.+..+|..+|.++...|++++|..+|++++...|......++..+|
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD---PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC---cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 456667777777777888888888877776 77777788888888888888888888888877777622245666777
Q ss_pred HHHHHc-CCHHHHHHHHHHHHHhCCCC
Q psy17788 265 LAENKF-GDASRAQALLEHTLTSYPAR 290 (365)
Q Consensus 265 ~~~~~~-g~~e~A~~~fe~~l~~~P~~ 290 (365)
.++... |++++|...|++++...|..
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 777777 88888888888887777764
No 179
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.16 E-value=6.2e-10 Score=91.53 Aligned_cols=117 Identities=13% Similarity=0.076 Sum_probs=99.3
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCC--------cchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17788 220 SVNIYLQCATLLLRLGQKDTARHILQRGLNN--------LPP--------AVHVTLITRFALAENKFGDASRAQALLEHT 283 (365)
Q Consensus 220 ~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~--------~p~--------~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~ 283 (365)
....+...|..++..|++++|...|.+++.. .|. ...+.++..+|.++.+.|+++.|...|+++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4678899999999999999999999999998 222 114678899999999999999999999999
Q ss_pred HHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcH-HHHHHHHHHHH
Q psy17788 284 LTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLK-PLYMKWLKLEE 339 (365)
Q Consensus 284 l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~-~~~~~~l~~e~ 339 (365)
+..+|+++.+|..+|.++...|+++.|+..|++++.+ .|. .. .+.........
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~-~~~~~~~~l~~~~~ 143 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPA-AASVVAREMKIVTE 143 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGG-GHHHHHHHHHHHHH
T ss_pred HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCC-CHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999985 343 44 55544444433
No 180
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.16 E-value=6.5e-11 Score=110.16 Aligned_cols=95 Identities=13% Similarity=0.073 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHH-
Q psy17788 223 IYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDML- 301 (365)
Q Consensus 223 ~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~- 301 (365)
+|..+|.++...|++++|+..|+++|...|.+ ..++..+|.++...|++++|+..|++++..+|++..++..++.+.
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~ 309 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKN--PKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAE 309 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 55566666666666666666666666665553 445555566666666666666666666666666666665555552
Q ss_pred HhcCChHHHHHHHHHHHh
Q psy17788 302 VKSDRVDLGRQVIQRAVT 319 (365)
Q Consensus 302 ~~~g~~~~Ar~~~eral~ 319 (365)
...+..+.++.+|.+++.
T Consensus 310 ~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 310 QEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHhhC
Confidence 233455555666666654
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.15 E-value=8.2e-10 Score=86.55 Aligned_cols=115 Identities=15% Similarity=0.063 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hhHHHHH
Q psy17788 222 NIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVH-VTLITRFALAENKFGDASRAQALLEHTLTSYPAR---VDVWGVY 297 (365)
Q Consensus 222 ~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~-~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~---~~~w~~~ 297 (365)
..++..|..+...|++++|...|++++...|.+.. ..++..+|.++...|++++|...|++++..+|++ +.++..+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 35678899999999999999999999999998642 2467788999999999999999999999999999 8889999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHH
Q psy17788 298 VDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEE 339 (365)
Q Consensus 298 ~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~ 339 (365)
+.++...|+++.|+..|++++.. . +...........+..
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~--~-p~~~~~~~a~~~l~~ 121 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQ--Y-PGSDAARVAQERLQS 121 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--S-TTSHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--C-CCChHHHHHHHHHHH
Confidence 99999999999999999999984 2 234444444444433
No 182
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.15 E-value=4.2e-10 Score=92.17 Aligned_cols=105 Identities=14% Similarity=0.085 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCC-------cHH-----HHHHHHHHHHHcCChHHHHHHHHHHHhc---
Q psy17788 186 VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHS-------SVN-----IYLQCATLLLRLGQKDTARHILQRGLNN--- 250 (365)
Q Consensus 186 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-------~~~-----~~~~~a~~~~~~g~~~~A~~~l~ral~~--- 250 (365)
.+...+..+...|++++|+..|++++... |. +.. +|.+.|.++...|++++|+..|+++|..
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~---p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEIS---HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH---TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 44555666666666666666666666665 44 222 6666666666666666666666666666
Q ss_pred ----CCCcchHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHH
Q psy17788 251 ----LPPAVHVTLI----TRFALAENKFGDASRAQALLEHTLTSYPARVDVWG 295 (365)
Q Consensus 251 ----~p~~~~~~~~----~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~ 295 (365)
.|+. ...| ...|.++...|++++|...|++++...|.+..+..
T Consensus 90 ~~e~~pd~--~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~ 140 (159)
T 2hr2_A 90 RGELNQDE--GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETP 140 (159)
T ss_dssp HCCTTSTH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCT
T ss_pred cccCCCch--HHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 5652 4444 55566666666666666666666666665544433
No 183
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.15 E-value=2.6e-09 Score=101.64 Aligned_cols=204 Identities=9% Similarity=0.035 Sum_probs=158.6
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHhhcCCCCH-----------------HHHHHHHHHHHcccCHHHHHHHHHHHHhhcc
Q psy17788 81 RIRQAEDELLQNGEPVSPDGFDRMLLGQPNNS-----------------ELWVKYMAYHLQATEIEKARSIARRALTVIN 143 (365)
Q Consensus 81 ~~~~~e~~l~~~~~p~a~~~fe~~l~~~p~~~-----------------~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p 143 (365)
.|.+.......++..+|+..|.+++...|+.. .++..++..+...|++++|..++.+++...+
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 45555544444777799999999999988754 3588999999999999999999999999776
Q ss_pred Ccccc-chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Q psy17788 144 IRNEE-DRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND-------ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAG 215 (365)
Q Consensus 144 ~~~~~-~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 215 (365)
..... ....+...+..++...|+++.+..++++++...+ ...++..++.+|...|++++|..++++++....
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 166 (434)
T 4b4t_Q 87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK 166 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 43111 0112333344555667899999999999987532 245888999999999999999999999988752
Q ss_pred C---CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CCcc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17788 216 Q---THSSVNIYLQCATLLLRLGQKDTARHILQRGLNNL---PPAV--HVTLITRFALAENKFGDASRAQALLEHTL 284 (365)
Q Consensus 216 ~---~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~---p~~~--~~~~~~~~a~~~~~~g~~e~A~~~fe~~l 284 (365)
. .+....++...+.++...|++++|+.+|++++... +... ...++...|.++...|+++.|...|..++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 167 KLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp TSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 2 13446789999999999999999999999998764 2221 24566777888888999999999998885
No 184
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.14 E-value=5.7e-10 Score=90.05 Aligned_cols=134 Identities=11% Similarity=-0.005 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCC---cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc----hHH
Q psy17788 186 VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHS---SVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV----HVT 258 (365)
Q Consensus 186 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~----~~~ 258 (365)
++..++.++...|++++|...|++++......+. ...++..+|.++...|++++|..++++++...+... ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3445555555555555555555555554310000 013455555555555666666555555555432211 133
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------ChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788 259 LITRFALAENKFGDASRAQALLEHTLTSYPA------RVDVWGVYVDMLVKSDRVDLGRQVIQRAVT 319 (365)
Q Consensus 259 ~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~------~~~~w~~~~~~~~~~g~~~~Ar~~~eral~ 319 (365)
++..+|.++...|++++|...|++++...+. ...++..++.++...|++++|...|++++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4455555566666666666666665544221 133455555666666666666666666654
No 185
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.14 E-value=5e-10 Score=87.31 Aligned_cols=100 Identities=9% Similarity=0.045 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCc-------HH
Q psy17788 151 LNVWTSLLNLEHLYGTKESLQECLHEAVRCND-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSS-------VN 222 (365)
Q Consensus 151 ~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~ 222 (365)
...|..++..+...|+++.|...|++++...| +..++..++.++...|++++|...|++++... |.+ +.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~ 80 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG---RENREDYRQIAK 80 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---HHSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc---cccchhHHHHHH
Confidence 34555555556666666666666666666554 33455666666666666666666666666665 433 66
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q psy17788 223 IYLQCATLLLRLGQKDTARHILQRGLNNLPP 253 (365)
Q Consensus 223 ~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~ 253 (365)
+|..+|.++...|++++|...|++++...|+
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 111 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 6666677777777777777777777666653
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.13 E-value=1.2e-10 Score=90.50 Aligned_cols=93 Identities=14% Similarity=0.187 Sum_probs=52.3
Q ss_pred hCCHHHHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCH
Q psy17788 197 SAQIRDLESTVKLLLKK---AGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDA 273 (365)
Q Consensus 197 ~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~ 273 (365)
.|++++|+..|+++++. . |.++.+|..+|.++...|++++|..+|++++...|.+ ..++..+|.++...|++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~ 77 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQG---KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH--QALRVFYAMVLYNLGRY 77 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCH
T ss_pred CCcHHHHHHHHHHHHHcCCCC---ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--hHHHHHHHHHHHHcCCH
Confidence 35555566666666654 3 4555566666666666666666666666666666654 33445556666666666
Q ss_pred HHHHHHHHHHHHhCCCChhHH
Q psy17788 274 SRAQALLEHTLTSYPARVDVW 294 (365)
Q Consensus 274 e~A~~~fe~~l~~~P~~~~~w 294 (365)
++|...|++++...|+++.+.
T Consensus 78 ~~A~~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 78 EQGVELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHH
Confidence 666666666666666555443
No 187
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.13 E-value=9.8e-11 Score=108.94 Aligned_cols=135 Identities=10% Similarity=0.053 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHH------------------HHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy17788 151 LNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETK------------------VYMNMMEIYAASAQIRDLESTVKLLLK 212 (365)
Q Consensus 151 ~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~------------------~~~~l~~~~~~~g~~~~A~~~~~~al~ 212 (365)
...|...++.+...|+++.|+..|++|+...|... +|..++.+|.+.|++++|+..|++++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555555555566666666666666666665433 556666666666666666666666666
Q ss_pred HhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCC
Q psy17788 213 KAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALA-ENKFGDASRAQALLEHTLTSYPAR 290 (365)
Q Consensus 213 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~-~~~~g~~e~A~~~fe~~l~~~P~~ 290 (365)
.. |.++.+|+.+|.++...|++++|+..|++++...|.+. .++..++.+ ....+..+.++.+|.+++...|.+
T Consensus 259 ~~---p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~--~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 259 EE---EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDK--AIRRELRALAEQEKALYQKQKEMYKGIFKGKDEG 332 (338)
T ss_dssp HC---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------------
T ss_pred hC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 65 66666666666666666666666666666666666542 233444444 223445556666666666666554
No 188
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.13 E-value=9.7e-10 Score=88.65 Aligned_cols=137 Identities=15% Similarity=0.049 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCC---CcH
Q psy17788 152 NVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-------TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTH---SSV 221 (365)
Q Consensus 152 ~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~ 221 (365)
.++..++.++...|+++.|...|++++...+. ..++..++.++...|++++|...|++++......+ ...
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 34445555555555555555555555544321 13566677777777888888888877777651111 125
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17788 222 NIYLQCATLLLRLGQKDTARHILQRGLNNLPP----AVHVTLITRFALAENKFGDASRAQALLEHTLTSYP 288 (365)
Q Consensus 222 ~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~----~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P 288 (365)
.++..+|.++...|++++|..++++++...+. .....++..+|.++...|++++|...|++++....
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 56777888888888888888888888765321 11244666778888888888888888888876544
No 189
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.11 E-value=9e-10 Score=90.23 Aligned_cols=101 Identities=15% Similarity=0.026 Sum_probs=93.3
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc----------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Q psy17788 220 SVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV----------HVTLITRFALAENKFGDASRAQALLEHTLTS--- 286 (365)
Q Consensus 220 ~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~----------~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~--- 286 (365)
....|...|..++..|++++|...|++||...|..+ ...+|...|.++.++|++++|...|+++|..
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 467789999999999999999999999999999831 1348899999999999999999999999999
Q ss_pred ----CCCChhHH----HHHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788 287 ----YPARVDVW----GVYVDMLVKSDRVDLGRQVIQRAVTQ 320 (365)
Q Consensus 287 ----~P~~~~~w----~~~~~~~~~~g~~~~Ar~~~eral~~ 320 (365)
+|++..+| +..+.++...|++++|...|++++.+
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999999 99999999999999999999999984
No 190
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.07 E-value=5.6e-11 Score=115.88 Aligned_cols=133 Identities=9% Similarity=-0.039 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HHHHHHHH
Q psy17788 113 ELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-TKVYMNMM 191 (365)
Q Consensus 113 ~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~~~l~ 191 (365)
..|..++..+...|++++|...|++|+...| ....+|..++.++...|+++.|+..|+++++.+|. ..+|..++
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 81 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIELNP-----SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRA 81 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-----ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4455566677889999999999999999888 67899999999999999999999999999999885 57889999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH--HHHcCChHHHHHHHH-----------HHHhcCCC
Q psy17788 192 EIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATL--LLRLGQKDTARHILQ-----------RGLNNLPP 253 (365)
Q Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~--~~~~g~~~~A~~~l~-----------ral~~~p~ 253 (365)
.+|...|++++|...|+++++.. |.+..++..++.+ +...|++++|..+++ +++...|.
T Consensus 82 ~~~~~~g~~~eA~~~~~~al~~~---p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~ 153 (477)
T 1wao_1 82 ASNMALGKFRAALRDYETVVKVK---PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDE 153 (477)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS---TTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccc
Confidence 99999999999999999999998 8888899998888 888999999999999 77776654
No 191
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.07 E-value=1.4e-08 Score=99.33 Aligned_cols=161 Identities=12% Similarity=0.072 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhCC---------HHHHHHHHHHHHHHhcCCCCcHH
Q psy17788 154 WTSLLNLEHLYGTKESLQECLHEAVRC--NDETKVYMNMMEIYAASAQ---------IRDLESTVKLLLKKAGQTHSSVN 222 (365)
Q Consensus 154 w~~~~~l~~~~g~~~~a~~v~~ral~~--~~~~~~~~~l~~~~~~~g~---------~~~A~~~~~~al~~~~~~~~~~~ 222 (365)
+...++.+.+.|+.+.|..+|+++... .|+..+|..++..+.+.+. .++|.++|++|.... ...+..
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G--~~Pd~~ 106 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDK--VVPNEA 106 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTT--CCCCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhC--CCCCHH
Confidence 333444444444444444444444432 2344444444444433222 344444555444331 133444
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChhHHHHHHH
Q psy17788 223 IYLQCATLLLRLGQKDTARHILQRGLNN--LPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSY-PARVDVWGVYVD 299 (365)
Q Consensus 223 ~~~~~a~~~~~~g~~~~A~~~l~ral~~--~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~-P~~~~~w~~~~~ 299 (365)
+|..++..+.+.|++++|..+|+++... .|+ +.+|..+...+.+.|+.++|..+|+.+...- .-+...|..++.
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd---~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~ 183 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR---LRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLK 183 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc---cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 4555555555555555555555444432 122 3344444444445555555555555444321 112344445555
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q psy17788 300 MLVKSDRVDLGRQVIQRAVT 319 (365)
Q Consensus 300 ~~~~~g~~~~Ar~~~eral~ 319 (365)
.+.+.|+.++|..+|+++..
T Consensus 184 ~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 184 VSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHhhCCCHHHHHHHHHHHHH
Confidence 55555555555555555444
No 192
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.02 E-value=3.8e-08 Score=96.34 Aligned_cols=168 Identities=11% Similarity=0.062 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCC---------hHHHHHHHHHHHhcCCCcc
Q psy17788 185 KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQ---------KDTARHILQRGLNNLPPAV 255 (365)
Q Consensus 185 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~---------~~~A~~~l~ral~~~p~~~ 255 (365)
.++..+++.+.+.|+.++|.++|++|.... ...+..+|..+...+...+. .+.|..+|+++....- .+
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~G--v~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~-~P 103 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNG--VQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKV-VP 103 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHT--CCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTC-CC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCC-CC
Confidence 467778999999999999999999999863 26788999999988876553 6889999999877531 12
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHH
Q psy17788 256 HVTLITRFALAENKFGDASRAQALLEHTLTS-YPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKW 334 (365)
Q Consensus 256 ~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~-~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~ 334 (365)
++.+|..++..+.+.|++++|..+|+.+... .+-+...|..++..+.+.|++++|..+|+++....+.| ....|...
T Consensus 104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P--d~~ty~~L 181 (501)
T 4g26_A 104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP--EEPELAAL 181 (501)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC--CHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC--CHHHHHHH
Confidence 3678888899999999999999999999875 33357889999999999999999999999999866554 56889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHH
Q psy17788 335 LKLEEQYGDAEAVENVKKEIEQY 357 (365)
Q Consensus 335 l~~e~~~G~~~~a~~v~~kA~~~ 357 (365)
+....+.|+.+.|..++++..+.
T Consensus 182 i~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 182 LKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhCCCHHHHHHHHHHHHHh
Confidence 99999999999999999987653
No 193
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.01 E-value=7.5e-10 Score=85.98 Aligned_cols=91 Identities=12% Similarity=0.198 Sum_probs=62.7
Q ss_pred hCCHHHHHHHHHHHHHcC---C-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHH
Q psy17788 164 YGTKESLQECLHEAVRCN---D-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDT 239 (365)
Q Consensus 164 ~g~~~~a~~v~~ral~~~---~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~ 239 (365)
.|+++.|+..|++++..+ | ...+|..++.+|...|++++|+..|+++++.+ |.++.++..+|.++...|++++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF---PNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCchHHHHHHHHHHHHcCCHHH
Confidence 356666777777777763 3 23466777777777777777777777777777 7777777777777777777777
Q ss_pred HHHHHHHHHhcCCCcchH
Q psy17788 240 ARHILQRGLNNLPPAVHV 257 (365)
Q Consensus 240 A~~~l~ral~~~p~~~~~ 257 (365)
|...|++++...|.++.+
T Consensus 80 A~~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 80 GVELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHhCCCcHHH
Confidence 777777777777765443
No 194
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.98 E-value=2.3e-09 Score=87.66 Aligned_cols=94 Identities=13% Similarity=0.093 Sum_probs=57.3
Q ss_pred HhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHhcCCCcchHHHHHHHHH
Q psy17788 196 ASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQK----------DTARHILQRGLNNLPPAVHVTLITRFAL 265 (365)
Q Consensus 196 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~----------~~A~~~l~ral~~~p~~~~~~~~~~~a~ 265 (365)
+.+.+++|+..|++++... |.++.+|+.+|.++...+++ ++|+..|++||...|+. ..++..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~---P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~--~~A~~~LG~ 88 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN---PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK--DEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc--HHHHHHHHH
Confidence 3445566666666666666 66666666666666665543 36666666666666653 445555566
Q ss_pred HHHHc-----------CCHHHHHHHHHHHHHhCCCChhHH
Q psy17788 266 AENKF-----------GDASRAQALLEHTLTSYPARVDVW 294 (365)
Q Consensus 266 ~~~~~-----------g~~e~A~~~fe~~l~~~P~~~~~w 294 (365)
++... |++++|...|++++..+|++...+
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~ 128 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYL 128 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHH
Confidence 55554 367777777777777777764433
No 195
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.98 E-value=1.1e-08 Score=96.31 Aligned_cols=138 Identities=11% Similarity=0.008 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CHHHHHHH
Q psy17788 112 SELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND-ETKVYMNM 190 (365)
Q Consensus 112 ~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~-~~~~~~~l 190 (365)
...|...+..+...|++++|...|++|+...+. .. .....+.+....| ...+|..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~-----~~------------------~~~~~~~~~~~~~~~~~~~~nl 279 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEG-----SR------------------AAAEDADGAKLQPVALSCVLNI 279 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----HH------------------HHSCHHHHGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc-----Cc------------------cccChHHHHHHHHHHHHHHHHH
Confidence 356888999999999999999999999996661 10 0011222222333 23567777
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHc
Q psy17788 191 MEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKF 270 (365)
Q Consensus 191 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~ 270 (365)
+.+|.+.|++++|+..|+++++.. |.++.+|+.+|.++...|++++|+..|+++++..|.+ ..++..++.++...
T Consensus 280 a~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~--~~~~~~l~~~~~~~ 354 (370)
T 1ihg_A 280 GACKLKMSDWQGAVDSCLEALEID---PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED--KAIQAELLKVKQKI 354 (370)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHhC---chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHH
Confidence 777778888888888888888776 7777888888888888888888888888888777774 34556667777777
Q ss_pred CCHHHHH
Q psy17788 271 GDASRAQ 277 (365)
Q Consensus 271 g~~e~A~ 277 (365)
++.+++.
T Consensus 355 ~~~~~a~ 361 (370)
T 1ihg_A 355 KAQKDKE 361 (370)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666554
No 196
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.94 E-value=2.8e-09 Score=87.11 Aligned_cols=86 Identities=10% Similarity=0.072 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC----------HHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHc
Q psy17788 166 TKESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQ----------IRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRL 234 (365)
Q Consensus 166 ~~~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~ 234 (365)
.++.|+..|+++++.+|. ..+|..++.++...++ +++|+..|+++++.. |.+..+|+.+|.+|...
T Consensus 17 ~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld---P~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID---PKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC---cCcHHHHHHHHHHHHHh
Confidence 345555555555555552 3455555555555544 458888888888888 88888888888888877
Q ss_pred C-----------ChHHHHHHHHHHHhcCCCc
Q psy17788 235 G-----------QKDTARHILQRGLNNLPPA 254 (365)
Q Consensus 235 g-----------~~~~A~~~l~ral~~~p~~ 254 (365)
| ++++|..+|++|+...|.+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 4 8999999999999999985
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.88 E-value=1.3e-08 Score=78.42 Aligned_cols=80 Identities=15% Similarity=0.162 Sum_probs=39.4
Q ss_pred HHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy17788 170 LQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGL 248 (365)
Q Consensus 170 a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral 248 (365)
++..|++++..+|. ..+|..++.+|...|++++|+..|++++... |.++.+|..+|.++...|++++|+..|++++
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD---PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444442 2344444555555555555555555555544 4445555555555555555555555555555
Q ss_pred hcCC
Q psy17788 249 NNLP 252 (365)
Q Consensus 249 ~~~p 252 (365)
...|
T Consensus 81 ~~~~ 84 (115)
T 2kat_A 81 AAAQ 84 (115)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 4444
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.88 E-value=2.1e-08 Score=73.17 Aligned_cols=86 Identities=17% Similarity=0.134 Sum_probs=67.4
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHH
Q psy17788 218 HSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVY 297 (365)
Q Consensus 218 ~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~ 297 (365)
+.++.+|..+|..+...|++++|...|++++...|.. ..++..+|.++...|++++|...|++++..+|.+..++..+
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l 83 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNL 83 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 3456778888888888888888888888888887774 45667778888888888888888888888888888888888
Q ss_pred HHHHHhcC
Q psy17788 298 VDMLVKSD 305 (365)
Q Consensus 298 ~~~~~~~g 305 (365)
+.++...|
T Consensus 84 ~~~~~~~g 91 (91)
T 1na3_A 84 GNAKQKQG 91 (91)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhcC
Confidence 87776543
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.87 E-value=1.8e-08 Score=77.60 Aligned_cols=82 Identities=13% Similarity=0.103 Sum_probs=74.3
Q ss_pred CChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy17788 96 VSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLH 175 (365)
Q Consensus 96 ~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ 175 (365)
.++..|++++..+|++..+|..++.++...|++++|+..|++++...| ....+|..++.++...|+++.|...|+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-----TYSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-----CcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 457789999999999999999999999999999999999999999888 667899999999999999999999999
Q ss_pred HHHHcCC
Q psy17788 176 EAVRCND 182 (365)
Q Consensus 176 ral~~~~ 182 (365)
+++...|
T Consensus 78 ~al~~~~ 84 (115)
T 2kat_A 78 SGLAAAQ 84 (115)
T ss_dssp HHHHHHH
T ss_pred HHHHhcc
Confidence 9988765
No 200
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.86 E-value=4.2e-07 Score=81.07 Aligned_cols=204 Identities=13% Similarity=0.108 Sum_probs=131.6
Q ss_pred HhcCCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHH
Q psy17788 89 LLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKE 168 (365)
Q Consensus 89 l~~~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~ 168 (365)
+.....|-.+..++-++..+|++..+...-+..|.. |--++--.|-..... + .+..+.....
T Consensus 43 lv~~~~P~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~----------Ya~afV~~~a~~~~~--~------~~~~~~~~~~ 104 (301)
T 3u64_A 43 LVAQSLPLVLKVYEALHLQNPAHRGLSLAVGRLYIM----------YANAFVQTPAQYLPE--D------EFEAQNEAYS 104 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----------HHHHHTHHHHHTSCG--G------GHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----------HHHHHhcCchhhcch--h------hHhhhhhhHH
Confidence 333455667888888888899998887777766632 222111111000000 0 1122223455
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHH-----HHHHHHHHhcCCCCcHHH--HHHHHHHHH-H--cC---
Q psy17788 169 SLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLES-----TVKLLLKKAGQTHSSVNI--YLQCATLLL-R--LG--- 235 (365)
Q Consensus 169 ~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~-----~~~~al~~~~~~~~~~~~--~~~~a~~~~-~--~g--- 235 (365)
.|..+|.|+..+ .+-.+..+...+.++.. -+..++.... +.++.. |...+..-. . .|
T Consensus 105 RA~~Ly~ra~~y--------~~raL~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~dve~L~W~ai~~ss~a~~~~gg~~ 174 (301)
T 3u64_A 105 RARKLYLRGARY--------ALSSLETAYPGFTREVFSGDEQRLHKVLSRCT--RVDVGTLYWVGTGYVAAFALTPLGSA 174 (301)
T ss_dssp HHHHHHHHHHHH--------HHHHHHHHSTTHHHHHTSSCHHHHHHHHTTCC--GGGHHHHHHHHHHHHHHHTTSCTTSC
T ss_pred HHHHHHHHHHHH--------HHHHHHHhCccHHHHHHhcchhhHHHHHHHcC--ccccHHHHHHHHHHHHHHhcCCCChH
Confidence 667777776543 11122222233332222 2344444432 555554 444444332 1 13
Q ss_pred ---ChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHhc-C
Q psy17788 236 ---QKDTARHILQRGLNNLPPAVHVTLITRFALAENKF-----GDASRAQALLEHTLTSYPAR-VDVWGVYVDMLVKS-D 305 (365)
Q Consensus 236 ---~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~-----g~~e~A~~~fe~~l~~~P~~-~~~w~~~~~~~~~~-g 305 (365)
....|+..++|+++.+|+..+-..+..+|.++... |+.++|+.+|+++|..+|+. .+.+..|++++... |
T Consensus 175 Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 175 LPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Confidence 35689999999999999965556778889999994 99999999999999999975 99999999999885 9
Q ss_pred ChHHHHHHHHHHHhC
Q psy17788 306 RVDLGRQVIQRAVTQ 320 (365)
Q Consensus 306 ~~~~Ar~~~eral~~ 320 (365)
+.+.++.++++|+..
T Consensus 255 d~~~a~~~L~kAL~a 269 (301)
T 3u64_A 255 NRAGFDEALDRALAI 269 (301)
T ss_dssp CHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHcC
Confidence 999999999999984
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.85 E-value=2.1e-09 Score=81.72 Aligned_cols=93 Identities=13% Similarity=0.042 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------hhHH
Q psy17788 221 VNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPAR------VDVW 294 (365)
Q Consensus 221 ~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~------~~~w 294 (365)
+..|..+|..+...|++++|...|++++...|.. ..++..+|.++...|++++|...|++++..+|++ ..++
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN--PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 3445555555555555555555555555555543 3344444555555555555555555555555554 4455
Q ss_pred HHHHHHHHhcCChHHHHHHHH
Q psy17788 295 GVYVDMLVKSDRVDLGRQVIQ 315 (365)
Q Consensus 295 ~~~~~~~~~~g~~~~Ar~~~e 315 (365)
..++.++...|+.+.|...|+
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHH
Confidence 555555555555544444443
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.85 E-value=2.7e-09 Score=81.06 Aligned_cols=98 Identities=18% Similarity=0.174 Sum_probs=79.1
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcch----HH
Q psy17788 183 ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVH----VT 258 (365)
Q Consensus 183 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~----~~ 258 (365)
+...|..++.++...|++++|+..|++++... |.++.+|..+|.++...|++++|+..|++++...|.... ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ---PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence 34678888999999999999999999999988 888999999999999999999999999999998887521 44
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17788 259 LITRFALAENKFGDASRAQALLEHT 283 (365)
Q Consensus 259 ~~~~~a~~~~~~g~~e~A~~~fe~~ 283 (365)
++..+|.++...|+++.|...|+++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 5667777777777776666555443
No 203
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.77 E-value=8.7e-08 Score=85.49 Aligned_cols=174 Identities=13% Similarity=0.081 Sum_probs=115.0
Q ss_pred CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHccc--------------CHHHHHHHHHHHHhhccCccccchHHHHHHH
Q psy17788 92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQAT--------------EIEKARSIARRALTVINIRNEEDRLNVWTSL 157 (365)
Q Consensus 92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~--------------~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~ 157 (365)
...|+-......+ ..+++.|+..+.+.. +...|+.+|.|+.. +++
T Consensus 60 ~~~P~~~~Ll~~~-------a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~--------------y~~ 118 (301)
T 3u64_A 60 LQNPAHRGLSLAV-------GRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGAR--------------YAL 118 (301)
T ss_dssp HHCTTCHHHHHHH-------HHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHH--------------HHH
T ss_pred hhCCCCHHHHHHH-------HHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHH--------------HHH
Confidence 3466666665555 467888877665432 34455555555544 223
Q ss_pred HHHHHHhCCHHHHH-----HHHHHHHHcCC----CHHHHHHHHHHH-HH--hC------CHHHHHHHHHHHHHHhcCCCC
Q psy17788 158 LNLEHLYGTKESLQ-----ECLHEAVRCND----ETKVYMNMMEIY-AA--SA------QIRDLESTVKLLLKKAGQTHS 219 (365)
Q Consensus 158 ~~l~~~~g~~~~a~-----~v~~ral~~~~----~~~~~~~l~~~~-~~--~g------~~~~A~~~~~~al~~~~~~~~ 219 (365)
-.++..+..+..+. .-+..++.... ...+|...+..- .. .| ....|+..++++++.. |.
T Consensus 119 raL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLD---P~ 195 (301)
T 3u64_A 119 SSLETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLW---PS 195 (301)
T ss_dssp HHHHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHC---TT
T ss_pred HHHHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhC---CC
Confidence 33343333333221 23444454432 233565443322 11 23 3578899999999998 87
Q ss_pred --cHHHHHHHHHHHHHc-----CChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC
Q psy17788 220 --SVNIYLQCATLLLRL-----GQKDTARHILQRGLNNLPPAVHVTLITRFALAENK-FGDASRAQALLEHTLTSYPAR 290 (365)
Q Consensus 220 --~~~~~~~~a~~~~~~-----g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~-~g~~e~A~~~fe~~l~~~P~~ 290 (365)
+..+|..+|.+|... |+.++|+.+|+|||...|+. .+.+.+.+|.++.. .|+.+.+..++++++...|..
T Consensus 196 ~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~-~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 196 YQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH-DPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT-CSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred cccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC-CchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 567999999999994 99999999999999999974 14556777999888 499999999999999987763
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.70 E-value=2.5e-07 Score=67.22 Aligned_cols=81 Identities=14% Similarity=0.157 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHH
Q psy17788 185 KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFA 264 (365)
Q Consensus 185 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a 264 (365)
.+|..++.++...|++++|+..|++++... |.++.+|..+|.++...|++++|...|++++...|.. ..++..+|
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~l~ 84 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD---PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--AEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC--HHHHHHHH
Confidence 456667777777777777777777777776 7777777777777777777777777777777777764 44555566
Q ss_pred HHHHHc
Q psy17788 265 LAENKF 270 (365)
Q Consensus 265 ~~~~~~ 270 (365)
.++...
T Consensus 85 ~~~~~~ 90 (91)
T 1na3_A 85 NAKQKQ 90 (91)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 665544
No 205
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.67 E-value=7.1e-08 Score=72.56 Aligned_cols=69 Identities=9% Similarity=-0.003 Sum_probs=34.3
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17788 218 HSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYP 288 (365)
Q Consensus 218 ~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P 288 (365)
|.++.+|+.+|.++...|++++|+..|++++...|... .++..+|.++...|++++|+..|++++...|
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYV--GTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 44555555555555555555555555555555555432 2334445555555555555555555554444
No 206
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.67 E-value=5.3e-08 Score=72.53 Aligned_cols=89 Identities=9% Similarity=0.084 Sum_probs=55.3
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Q psy17788 189 NMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVN-IYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAE 267 (365)
Q Consensus 189 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~ 267 (365)
..+..+...|++++|+..|+++++.. |.++. +|..+|.++...|++++|...|++++...|....+...
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~------- 74 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTE---PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR------- 74 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC---SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH-------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH-------
Confidence 34556666677777777777777666 66666 77777777777777777777777777766665432211
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC
Q psy17788 268 NKFGDASRAQALLEHTLTSYPAR 290 (365)
Q Consensus 268 ~~~g~~e~A~~~fe~~l~~~P~~ 290 (365)
+.+.++...|++++..+|++
T Consensus 75 ---~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 75 ---KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp ---HHHHHHHHHHCCTTHHHHCC
T ss_pred ---HHHHHHHHHHHHHhccCccc
Confidence 34455555555555555543
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.65 E-value=1.5e-07 Score=70.79 Aligned_cols=71 Identities=10% Similarity=0.120 Sum_probs=61.3
Q ss_pred cCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Q psy17788 107 GQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND 182 (365)
Q Consensus 107 ~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~ 182 (365)
.+|+++.+|+.++..+...|++++|+..|++++...| +...+|..++.++...|+++.|+..|++++...|
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDP-----DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 4799999999999999999999999999999999888 6678999999999999999999999999987643
No 208
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.64 E-value=1.9e-07 Score=90.96 Aligned_cols=128 Identities=9% Similarity=0.080 Sum_probs=102.9
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHhcC-----CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCcch-HHHH
Q psy17788 192 EIYAASAQIRDLESTVKLLLKKAGQ-----THSSVNIYLQCATLLLRLGQKDTARHILQRGLNN-----LPPAVH-VTLI 260 (365)
Q Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~-----~p~~~~-~~~~ 260 (365)
.-+...|++++|+.+|++++..... +|.-..++.++|.+|..+|++++|..+++++|.. -|.++. ...+
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3456789999999999999987421 2334567889999999999999999999999986 244333 4577
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788 261 TRFALAENKFGDASRAQALLEHTLTS--------YPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVT 319 (365)
Q Consensus 261 ~~~a~~~~~~g~~e~A~~~fe~~l~~--------~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~ 319 (365)
.++|.++...|++++|..+|++++.. +|.-.++...+..++..+|.+.+|..+|.++.+
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999974 344455667788888889999999999999876
No 209
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.53 E-value=2.7e-07 Score=68.56 Aligned_cols=85 Identities=16% Similarity=0.103 Sum_probs=64.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHh
Q psy17788 225 LQCATLLLRLGQKDTARHILQRGLNNLPPAVHVT-LITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVK 303 (365)
Q Consensus 225 ~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~-~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~ 303 (365)
+..|..+...|++++|...|++++...|.+ .. ++..+|.++...|++++|...|++++..+|++..+|..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~------- 74 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVG--KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR------- 74 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSST--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH-------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCc--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH-------
Confidence 456777888888888888888888888874 55 67777888888888888888888888888888877733
Q ss_pred cCChHHHHHHHHHHHh
Q psy17788 304 SDRVDLGRQVIQRAVT 319 (365)
Q Consensus 304 ~g~~~~Ar~~~eral~ 319 (365)
+.+.++...|++++.
T Consensus 75 -~~~~~a~~~~~~~~~ 89 (99)
T 2kc7_A 75 -KMVMDILNFYNKDMY 89 (99)
T ss_dssp -HHHHHHHHHHCCTTH
T ss_pred -HHHHHHHHHHHHHhc
Confidence 334455566665554
No 210
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.52 E-value=1e-06 Score=85.77 Aligned_cols=134 Identities=6% Similarity=0.007 Sum_probs=102.8
Q ss_pred HHHhCCHHHHHHHHHHHHHcCC------C---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh----cC-CCCcHHHHHH
Q psy17788 161 EHLYGTKESLQECLHEAVRCND------E---TKVYMNMMEIYAASAQIRDLESTVKLLLKKA----GQ-THSSVNIYLQ 226 (365)
Q Consensus 161 ~~~~g~~~~a~~v~~ral~~~~------~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----~~-~~~~~~~~~~ 226 (365)
....|++++|+.++++++.... + ..++..++.+|...|++++|..+|++++... |. +|.-...+.+
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3467999999999999987632 2 2467889999999999999999999999764 31 2344567889
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcC-----CCcch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q psy17788 227 CATLLLRLGQKDTARHILQRGLNNL-----PPAVH-VTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVW 294 (365)
Q Consensus 227 ~a~~~~~~g~~~~A~~~l~ral~~~-----p~~~~-~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w 294 (365)
+|.+|..+|++++|..+|++|+.+. |+++. ..+...++.++...|.+..|..+|.++.+..-++-.+|
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~~~ 472 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQPMQ 472 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 9999999999999999999999862 44433 33556677888889999999999998876554444455
No 211
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.47 E-value=3.8e-06 Score=67.06 Aligned_cols=107 Identities=7% Similarity=-0.055 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH----cCChHHHHH
Q psy17788 167 KESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLR----LGQKDTARH 242 (365)
Q Consensus 167 ~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~----~g~~~~A~~ 242 (365)
+++|...|+++....+.... ++.+|...+..++|...|+++.+. .++..+..++.+|.. .+++++|..
T Consensus 11 ~~~A~~~~~~aa~~g~~~a~---lg~~y~~g~~~~~A~~~~~~Aa~~-----g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 11 LKKAIQYYVKACELNEMFGC---LSLVSNSQINKQKLFQYLSKACEL-----NSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHTTCTTHH---HHHHTCTTSCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHhhh---HHHHHHcCCCHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 34444445544444322222 444444444444455555555442 244445555555444 444455555
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q psy17788 243 ILQRGLNNLPPAVHVTLITRFALAENK----FGDASRAQALLEHTLT 285 (365)
Q Consensus 243 ~l~ral~~~p~~~~~~~~~~~a~~~~~----~g~~e~A~~~fe~~l~ 285 (365)
+|+++.+. . +......+|.++.. .+++++|..+|+++..
T Consensus 83 ~~~~Aa~~--g--~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 83 YYSKACGL--N--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HHHHHHHT--T--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHcC--C--CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 55544433 1 12333444444444 4444444444444443
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.42 E-value=1.2e-05 Score=74.63 Aligned_cols=158 Identities=11% Similarity=0.060 Sum_probs=86.6
Q ss_pred ChHHHHHHhhcCCCCHHHHHHHHHHH--Hc---ccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788 97 SPDGFDRMLLGQPNNSELWVKYMAYH--LQ---ATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ 171 (365)
Q Consensus 97 a~~~fe~~l~~~p~~~~~w~~~~~~~--~~---~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~ 171 (365)
.....+++...-|.+..+|-.|+... +. ...+.+|+.+|++|++..| ++..+|..++..+...
T Consensus 179 ~~~e~~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP-----~~a~A~A~la~a~~~~------- 246 (372)
T 3ly7_A 179 PQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSP-----EFTYARAEKALVDIVR------- 246 (372)
T ss_dssp CHHHHHHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHH-------
T ss_pred hHHHHHHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHH-------
Confidence 34556667777788887777776554 32 3346789999999999888 6666665444333200
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHH--HHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy17788 172 ECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKL--LLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLN 249 (365)
Q Consensus 172 ~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~ 249 (365)
.. ..+..... .......+.. ++... +.++.++..++..+...|+++.|...++||+.
T Consensus 247 -----~~-~~~~~~~~------------~~~l~~a~~a~~a~~~~---~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~ 305 (372)
T 3ly7_A 247 -----HS-QHPLDEKQ------------LAALNTEIDNIVTLPEL---NNLSIIYQIKAVSALVKGKTDESYQAINTGID 305 (372)
T ss_dssp -----HH-HSCCCHHH------------HHHHHHHHHHHHTCGGG---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -----hc-cCCCchhh------------HHHHHHHHHHHHhcccC---CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 00 00000000 0000011111 11122 55666666666666666666666666666666
Q ss_pred cCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy17788 250 NLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPAR 290 (365)
Q Consensus 250 ~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~ 290 (365)
..|. ...+..+|.++.-.|++++|...|++++..+|..
T Consensus 306 Ln~s---~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 306 LEMS---WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp HCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred cCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 6543 3344455666666666666666666666666654
No 213
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.41 E-value=1.5e-06 Score=64.50 Aligned_cols=70 Identities=17% Similarity=0.016 Sum_probs=56.5
Q ss_pred CCcHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17788 218 HSSVNIYLQCATLLLRLGQ---KDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPA 289 (365)
Q Consensus 218 ~~~~~~~~~~a~~~~~~g~---~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~ 289 (365)
|.++.+|..+|.+++..++ .++|..+|+++|..+|++ +..+..+|..+++.|++++|+.+|++++..+|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~--~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN--EAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 7788888888888876655 688888888888888885 555566688888888888888888888888887
No 214
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.38 E-value=5.4e-06 Score=66.17 Aligned_cols=110 Identities=5% Similarity=-0.145 Sum_probs=94.3
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHH----cCCH
Q psy17788 198 AQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENK----FGDA 273 (365)
Q Consensus 198 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~----~g~~ 273 (365)
+++++|...|+++.+.. ++... ++.+|...+.+++|..+|+++.+. . +......+|.++.. .+++
T Consensus 9 ~d~~~A~~~~~~aa~~g-----~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g--~~~a~~~Lg~~y~~G~g~~~d~ 77 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-----EMFGC--LSLVSNSQINKQKLFQYLSKACEL--N--SGNGCRFLGDFYENGKYVKKDL 77 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-----CTTHH--HHHHTCTTSCHHHHHHHHHHHHHT--T--CHHHHHHHHHHHHHCSSSCCCH
T ss_pred cCHHHHHHHHHHHHcCC-----CHhhh--HHHHHHcCCCHHHHHHHHHHHHcC--C--CHHHHHHHHHHHHcCCCCCccH
Confidence 45789999999999864 33334 888888888899999999999876 2 35677888999988 8999
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHh----cCChHHHHHHHHHHHhC
Q psy17788 274 SRAQALLEHTLTSYPARVDVWGVYVDMLVK----SDRVDLGRQVIQRAVTQ 320 (365)
Q Consensus 274 e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~----~g~~~~Ar~~~eral~~ 320 (365)
++|..+|+++... .++.++..++.+|.. .+++++|...|+++...
T Consensus 78 ~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 78 RKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 9999999999876 678999999999998 89999999999999984
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.28 E-value=9.8e-06 Score=75.11 Aligned_cols=28 Identities=4% Similarity=0.055 Sum_probs=24.6
Q ss_pred CChHHHHHHhhcCCCCHHHHHHHHHHHH
Q psy17788 96 VSPDGFDRMLLGQPNNSELWVKYMAYHL 123 (365)
Q Consensus 96 ~a~~~fe~~l~~~p~~~~~w~~~~~~~~ 123 (365)
+|+..|++++..+|++..+|..++.++.
T Consensus 217 ~A~~l~e~Al~lDP~~a~A~A~la~a~~ 244 (372)
T 3ly7_A 217 RASELLGEIVQSSPEFTYARAEKALVDI 244 (372)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 7899999999999999999987776664
No 216
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.13 E-value=3.9e-05 Score=56.79 Aligned_cols=75 Identities=7% Similarity=-0.132 Sum_probs=64.6
Q ss_pred CCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHH
Q psy17788 182 DETKVYMNMMEIYAASAQ---IRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVT 258 (365)
Q Consensus 182 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~ 258 (365)
++..++..++.++...++ .++|..+++++++.. |.++.+++.+|..++..|++++|+.+|++++...|..+...
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d---p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~~ 80 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE---PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDRV 80 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC---cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHH
Confidence 356788888888866555 799999999999998 99999999999999999999999999999999998855444
Q ss_pred H
Q psy17788 259 L 259 (365)
Q Consensus 259 ~ 259 (365)
.
T Consensus 81 ~ 81 (93)
T 3bee_A 81 T 81 (93)
T ss_dssp H
T ss_pred H
Confidence 3
No 217
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.11 E-value=3.5e-05 Score=58.12 Aligned_cols=79 Identities=14% Similarity=0.148 Sum_probs=56.6
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q psy17788 220 SVNIYLQCATLLLRLGQKDTARHILQRGLNNL-----PPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVW 294 (365)
Q Consensus 220 ~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~-----p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w 294 (365)
++.-.+.+|..++..|++..|...|+.|+... +......++..+|.++++.|+++.|..++++++...|++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 44556677777777777777777777777653 1223566777778888888888888888888888888877765
Q ss_pred HHHH
Q psy17788 295 GVYV 298 (365)
Q Consensus 295 ~~~~ 298 (365)
..+.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 5554
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.08 E-value=4.6e-05 Score=61.45 Aligned_cols=93 Identities=12% Similarity=0.077 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHHHcCCHHH
Q psy17788 200 IRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLG---QKDTARHILQRGLNNL-PPAVHVTLITRFALAENKFGDASR 275 (365)
Q Consensus 200 ~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g---~~~~A~~~l~ral~~~-p~~~~~~~~~~~a~~~~~~g~~e~ 275 (365)
...+++.|.+.+... +.+.++.+.||..+.+.+ +++++..+|+..+... |. .+...++.+|..+++.|++++
T Consensus 14 l~~~~~~y~~e~~~~---~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~-~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG---SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKE-EQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHTT---CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH-HHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHccC---CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc-chHHHHHHHHHHHHHccCHHH
Confidence 345566666666654 667777777877777766 4557777777777766 42 145566777777778888888
Q ss_pred HHHHHHHHHHhCCCChhHHHH
Q psy17788 276 AQALLEHTLTSYPARVDVWGV 296 (365)
Q Consensus 276 A~~~fe~~l~~~P~~~~~w~~ 296 (365)
|+.+++++|+..|++..+...
T Consensus 90 A~~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHH
Confidence 888888888888877665544
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.87 E-value=5e-05 Score=72.61 Aligned_cols=87 Identities=13% Similarity=0.147 Sum_probs=42.4
Q ss_pred hCCHHHHHHHHHHHHHcC-----C-C---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh----cC-CCCcHHHHHHHHH
Q psy17788 164 YGTKESLQECLHEAVRCN-----D-E---TKVYMNMMEIYAASAQIRDLESTVKLLLKKA----GQ-THSSVNIYLQCAT 229 (365)
Q Consensus 164 ~g~~~~a~~v~~ral~~~-----~-~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----~~-~~~~~~~~~~~a~ 229 (365)
+|++++|..++++++... | + ..++..++.+|...|++++|..+|++++... |. +|.-...+.++|.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 345555555555555431 1 1 1244455555555555555555555555432 21 1222233555555
Q ss_pred HHHHcCChHHHHHHHHHHHhc
Q psy17788 230 LLLRLGQKDTARHILQRGLNN 250 (365)
Q Consensus 230 ~~~~~g~~~~A~~~l~ral~~ 250 (365)
+|..+|++++|..+|++|+.+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHH
Confidence 555555555555555555543
No 220
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.84 E-value=9.2e-05 Score=70.78 Aligned_cols=91 Identities=10% Similarity=0.084 Sum_probs=68.9
Q ss_pred HhCCHHHHHHHHHHHHHHhcC--CCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCcch-HHHHHHHH
Q psy17788 196 ASAQIRDLESTVKLLLKKAGQ--THSS---VNIYLQCATLLLRLGQKDTARHILQRGLNN-----LPPAVH-VTLITRFA 264 (365)
Q Consensus 196 ~~g~~~~A~~~~~~al~~~~~--~~~~---~~~~~~~a~~~~~~g~~~~A~~~l~ral~~-----~p~~~~-~~~~~~~a 264 (365)
..|++++|..+|++++..... .+.+ ..++.++|.+|..+|++++|..+++++|.. -|.++. ...+.++|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357889999999999876421 1334 456788888999999999999999999876 233332 34667888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh
Q psy17788 265 LAENKFGDASRAQALLEHTLTS 286 (365)
Q Consensus 265 ~~~~~~g~~e~A~~~fe~~l~~ 286 (365)
.++...|++++|..+|++++..
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHH
Confidence 8888899999998888888864
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.81 E-value=0.00018 Score=68.70 Aligned_cols=87 Identities=11% Similarity=-0.015 Sum_probs=42.9
Q ss_pred hCCHHHHHHHHHHHHHcCC------C---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh----cC-CCCcHHHHHHHHH
Q psy17788 164 YGTKESLQECLHEAVRCND------E---TKVYMNMMEIYAASAQIRDLESTVKLLLKKA----GQ-THSSVNIYLQCAT 229 (365)
Q Consensus 164 ~g~~~~a~~v~~ral~~~~------~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----~~-~~~~~~~~~~~a~ 229 (365)
.|.+++|...+++++.... + ..++..++.+|...|++++|..++++++..+ |. +|.-...+.++|.
T Consensus 300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~ 379 (429)
T 3qwp_A 300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGK 379 (429)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHH
Confidence 4555555555555554321 1 1244455555555555555555555555432 21 1222234555555
Q ss_pred HHHHcCChHHHHHHHHHHHhc
Q psy17788 230 LLLRLGQKDTARHILQRGLNN 250 (365)
Q Consensus 230 ~~~~~g~~~~A~~~l~ral~~ 250 (365)
+|..+|++++|..+|++|+.+
T Consensus 380 ~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 380 LQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHH
Confidence 555555555555555555543
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.78 E-value=0.00033 Score=56.44 Aligned_cols=93 Identities=13% Similarity=0.068 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHHcCChHHHH
Q psy17788 167 KESLQECLHEAVRCND-ETKVYMNMMEIYAASA---QIRDLESTVKLLLKKAGQTH-SSVNIYLQCATLLLRLGQKDTAR 241 (365)
Q Consensus 167 ~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~-~~~~~~~~~a~~~~~~g~~~~A~ 241 (365)
...+++-|.+.+...+ +..+.+.++-.+.+++ .+++++.+++.+++... | .+.+.++.+|..+++.|++++|+
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~--p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGS--KEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC--ccchHHHHHHHHHHHHHccCHHHHH
Confidence 4566777777776544 6678889999998888 66799999999998740 2 46789999999999999999999
Q ss_pred HHHHHHHhcCCCcchHHHHH
Q psy17788 242 HILQRGLNNLPPAVHVTLIT 261 (365)
Q Consensus 242 ~~l~ral~~~p~~~~~~~~~ 261 (365)
.+++++|+..|.+..+..+.
T Consensus 92 ~y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHH
Confidence 99999999999875544333
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.74 E-value=0.0005 Score=51.63 Aligned_cols=73 Identities=14% Similarity=0.100 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcC----CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcch
Q psy17788 184 TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQ----THSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVH 256 (365)
Q Consensus 184 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~ 256 (365)
....+.++.++.+.|++..|..-|+.+++.... ....+.++..+|..+.+.|+++.|..++++++...|.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~ 81 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR 81 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence 345678899999999999999999999987521 1356889999999999999999999999999999998633
No 224
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.68 E-value=0.00036 Score=66.59 Aligned_cols=90 Identities=10% Similarity=-0.058 Sum_probs=68.9
Q ss_pred HHHHcCChHHHHHHHHHHHhcC-----CCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChhHHH
Q psy17788 230 LLLRLGQKDTARHILQRGLNNL-----PPAV-HVTLITRFALAENKFGDASRAQALLEHTLTS--------YPARVDVWG 295 (365)
Q Consensus 230 ~~~~~g~~~~A~~~l~ral~~~-----p~~~-~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~--------~P~~~~~w~ 295 (365)
-+...|++++|..+++++|... |.++ .+.++..+|.++...|++++|..+++++|.. +|.-...++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3456788999999999998752 3322 2456777888888899999999999988864 233345577
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q psy17788 296 VYVDMLVKSDRVDLGRQVIQRAVT 319 (365)
Q Consensus 296 ~~~~~~~~~g~~~~Ar~~~eral~ 319 (365)
.++.+|..+|++++|..+|++|+.
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 888889999999999999999886
No 225
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.52 E-value=0.019 Score=53.83 Aligned_cols=174 Identities=9% Similarity=0.060 Sum_probs=105.3
Q ss_pred HHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHcCCCH-HHH------
Q psy17788 116 VKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHL-YGTKESLQECLHEAVRCNDET-KVY------ 187 (365)
Q Consensus 116 ~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~-~g~~~~a~~v~~ral~~~~~~-~~~------ 187 (365)
+.++..+.+.|+.++...++.......+.-.-..-..+-..++.+... .+..+....++..+++...+. ..|
T Consensus 23 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l~ 102 (394)
T 3txn_A 23 LQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSLE 102 (394)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666665443322211000112223333333322 245566666666666543211 233
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhcCC---CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CCcc--hHHH
Q psy17788 188 MNMMEIYAASAQIRDLESTVKLLLKKAGQT---HSSVNIYLQCATLLLRLGQKDTARHILQRGLNNL---PPAV--HVTL 259 (365)
Q Consensus 188 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~---p~~~--~~~~ 259 (365)
..++.+|...|++.+|.+++.++.+..... ..-..++..-..+|...|++.+++.+|.+|.... +.++ ...+
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 367888999999999999888888765211 1224567777778888899999998888886542 1222 2334
Q ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC
Q psy17788 260 ITRFALAEN-KFGDASRAQALLEHTLTSYPA 289 (365)
Q Consensus 260 ~~~~a~~~~-~~g~~e~A~~~fe~~l~~~P~ 289 (365)
...-|.++. ..+++..|...|-.++..+..
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~ 213 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAFSYFYEAFEGFDS 213 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHhccCHHHHHHHHHHHHhcccc
Confidence 445577788 789999998888888776653
No 226
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.48 E-value=0.0029 Score=49.12 Aligned_cols=94 Identities=13% Similarity=0.088 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHH---HHHHHHHHHhcC-CCcchHHHHHHHHHHHHHcCCHHH
Q psy17788 200 IRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDT---ARHILQRGLNNL-PPAVHVTLITRFALAENKFGDASR 275 (365)
Q Consensus 200 ~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~---A~~~l~ral~~~-p~~~~~~~~~~~a~~~~~~g~~e~ 275 (365)
...++..|.+.+... +.+..+-+.||-.+.+..+... ++.+++..+... |. ..-..++.+|..+++.|++++
T Consensus 17 l~~~~~~y~~e~~~~---~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~-~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAG---SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE-EQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHS---CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHH-HHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhccC---CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc-hHHHHHHHHHHHHHHhhhHHH
Confidence 456677777777665 6788888888888888776554 778888877765 31 235567777888888888888
Q ss_pred HHHHHHHHHHhCCCChhHHHHH
Q psy17788 276 AQALLEHTLTSYPARVDVWGVY 297 (365)
Q Consensus 276 A~~~fe~~l~~~P~~~~~w~~~ 297 (365)
|+.+++.+|+..|.+..+...-
T Consensus 93 A~~~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHH
Confidence 8888888888888887665543
No 227
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=97.28 E-value=0.035 Score=46.54 Aligned_cols=137 Identities=14% Similarity=0.166 Sum_probs=92.3
Q ss_pred CHHHHHHHHHHHHhh-ccCccccchHHHHHHHHHHH-HHh--CC---HHHHH-HHHHHHHHcCC----------CHHHHH
Q psy17788 127 EIEKARSIARRALTV-INIRNEEDRLNVWTSLLNLE-HLY--GT---KESLQ-ECLHEAVRCND----------ETKVYM 188 (365)
Q Consensus 127 ~~e~A~~~~~raL~~-~p~~~~~~~~~~w~~~~~l~-~~~--g~---~~~a~-~v~~ral~~~~----------~~~~~~ 188 (365)
.+...|..|++.|.. +... .+-+.+|..|+..- ..+ |. ..... .+++|+++..- -..+|+
T Consensus 7 ~l~~~r~~fE~~l~~~l~~~--dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl 84 (202)
T 3esl_A 7 QLNQTKIAYEQRLLNDLEDM--DDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWI 84 (202)
T ss_dssp HHHHHHHHHHHHHHHTGGGC--SCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccC--CCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHH
Confidence 456677888888875 2211 25578999999843 322 22 23355 78999887531 135788
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Q psy17788 189 NMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAEN 268 (365)
Q Consensus 189 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~ 268 (365)
.+++++ ..+.......+|.-+.....+ ...+..|..+|.++...|++.+|..+|+.+++..-. |.-.+..++..+..
T Consensus 85 ~Ya~~~-~~~~~~~p~~if~~L~~~~IG-~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~-P~~rL~~~~~~F~~ 161 (202)
T 3esl_A 85 WYINLF-LSNNFHESENTFKYMFNKGIG-TKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCR-PYNRLLRSLSNYED 161 (202)
T ss_dssp HHHHHH-STTCHHHHHHHHHHHHHHTSS-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-SHHHHHHHHHHHHH
T ss_pred HHHHhh-cccccCCHHHHHHHHHHCCCc-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-cHHHHHHHHHHHHH
Confidence 888765 234467888999888876422 667889999999999999999999999999987543 22344444444443
No 228
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.28 E-value=0.0025 Score=51.78 Aligned_cols=27 Identities=15% Similarity=0.167 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17788 257 VTLITRFALAENKFGDASRAQALLEHT 283 (365)
Q Consensus 257 ~~~~~~~a~~~~~~g~~e~A~~~fe~~ 283 (365)
+.+-++.+.|+.+.|+++.|..+++.+
T Consensus 122 ~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 122 IEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 445566677777777777777776655
No 229
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=97.25 E-value=0.009 Score=47.88 Aligned_cols=129 Identities=8% Similarity=0.120 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHc---CChHHHHHHHHHHHhcCCCcc-------hHHHHHHHHHHHHHc
Q psy17788 201 RDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRL---GQKDTARHILQRGLNNLPPAV-------HVTLITRFALAENKF 270 (365)
Q Consensus 201 ~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~---g~~~~A~~~l~ral~~~p~~~-------~~~~~~~~a~~~~~~ 270 (365)
..++..|+..+..+. ..+-..+|..|+.+.... |. ..-..+++|++..+.+.+ .+.+|..++.+.
T Consensus 7 ~~~~~~fE~~i~~y~-gdDPL~~w~~YI~W~e~~~P~g~-~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~--- 81 (152)
T 4a1g_A 7 ENVLQMLEAHMQSYK-GNDPLGEWERYIQWVEENFPENK-EYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYN--- 81 (152)
T ss_dssp HHHHHHHHHHTTSCC-SSCHHHHHHHHHHHHHTTCSSCT-HHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTB---
T ss_pred HHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhc---
Confidence 344555666655541 133346777777766553 32 234566666666543322 244555555432
Q ss_pred CCHHHHHHHHHHHHHhC--CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHH
Q psy17788 271 GDASRAQALLEHTLTSY--PARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEE 339 (365)
Q Consensus 271 g~~e~A~~~fe~~l~~~--P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~ 339 (365)
+.++.+|.-+.... -....+|..++.++...|++.+|..+|+.++..+ ......+-.++-.|..
T Consensus 82 ---~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~--A~P~~rL~~~~~~F~~ 147 (152)
T 4a1g_A 82 ---SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ--AEPREFLQQQYRLFQT 147 (152)
T ss_dssp ---SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CBSHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CccHHHHHHHHHHHHH
Confidence 22556665555432 2335566666666666666666666666666632 2224455555555554
No 230
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=97.25 E-value=0.0033 Score=65.22 Aligned_cols=97 Identities=12% Similarity=0.051 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH-----HcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHH
Q psy17788 152 NVWTSLLNLEHLYGTKESLQECLHEAV-----RCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQ 226 (365)
Q Consensus 152 ~~w~~~~~l~~~~g~~~~a~~v~~ral-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 226 (365)
..+.++++.+.+.|..+.|..+|.+.. ...|+...|..+++.|++.|++++|.++|++|.... ...+...|..
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G--~~PDvvTYnt 205 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG--LTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--CCCCHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCcHHHHHH
Confidence 345666666667777777777775533 234666677777777777777777777777776542 1556666777
Q ss_pred HHHHHHHcCCh-HHHHHHHHHHHhc
Q psy17788 227 CATLLLRLGQK-DTARHILQRGLNN 250 (365)
Q Consensus 227 ~a~~~~~~g~~-~~A~~~l~ral~~ 250 (365)
+...+.+.|+. ++|..+|+.+...
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 77766666663 5666666666553
No 231
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=97.20 E-value=0.0083 Score=50.30 Aligned_cols=138 Identities=6% Similarity=0.062 Sum_probs=96.6
Q ss_pred CHHHHHHHHHHHHHH--hcCCCCcHHHHHHHHHHHHHc---CCh---HHHH-HHHHHHHhcCCCcc-------hHHHHHH
Q psy17788 199 QIRDLESTVKLLLKK--AGQTHSSVNIYLQCATLLLRL---GQK---DTAR-HILQRGLNNLPPAV-------HVTLITR 262 (365)
Q Consensus 199 ~~~~A~~~~~~al~~--~~~~~~~~~~~~~~a~~~~~~---g~~---~~A~-~~l~ral~~~p~~~-------~~~~~~~ 262 (365)
.....+..|+..+.. . ...+-..+|..|+.+.... |.. ..-. .+++|++..+.+.+ .+.+|..
T Consensus 7 ~l~~~r~~fE~~l~~~l~-~~dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~ 85 (202)
T 3esl_A 7 QLNQTKIAYEQRLLNDLE-DMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIW 85 (202)
T ss_dssp HHHHHHHHHHHHHHHTGG-GCSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccc-cCCCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHH
Confidence 356677788888877 3 1144458999999987653 332 1234 68899988643322 3678888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHh
Q psy17788 263 FALAENKFGDASRAQALLEHTLTSY--PARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQ 340 (365)
Q Consensus 263 ~a~~~~~~g~~e~A~~~fe~~l~~~--P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~ 340 (365)
|+.+. ..++...++.+|.-+.... -....+|..++.++...|++.+|..+|+.++..+ ......+-.++-.|...
T Consensus 86 Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~--A~P~~rL~~~~~~F~~R 162 (202)
T 3esl_A 86 YINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN--CRPYNRLLRSLSNYEDR 162 (202)
T ss_dssp HHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CBSHHHHHHHHHHHHHH
T ss_pred HHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CccHHHHHHHHHHHHHH
Confidence 88764 2444668888888887653 3456788899999999999999999999999843 23356777777777654
No 232
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=97.12 E-value=0.0057 Score=63.52 Aligned_cols=102 Identities=8% Similarity=-0.017 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh-cCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHH
Q psy17788 184 TKVYMNMMEIYAASAQIRDLESTVKLLLKKA-GQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITR 262 (365)
Q Consensus 184 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~ 262 (365)
...|..+++.|++.|+.++|.++|..+.+.. .+...+..+|..++..+.+.|++++|..+|..+...-- .+++..|..
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~-~PDvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGL-TPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC-CCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCcHHHHHH
Confidence 3478999999999999999999998875320 00167899999999999999999999999999987532 123778888
Q ss_pred HHHHHHHcCC-HHHHHHHHHHHHHh
Q psy17788 263 FALAENKFGD-ASRAQALLEHTLTS 286 (365)
Q Consensus 263 ~a~~~~~~g~-~e~A~~~fe~~l~~ 286 (365)
+...+.+.|. .+.|..+|+.+...
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 8888899997 57899999998864
No 233
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=97.10 E-value=0.012 Score=47.11 Aligned_cols=111 Identities=20% Similarity=0.259 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhhccCccccchHHHHHHHHHHHHH-h--CCHHHHHHHHHHHHHcCCC----------HHHHHHHHHHHH
Q psy17788 129 EKARSIARRALTVINIRNEEDRLNVWTSLLNLEHL-Y--GTKESLQECLHEAVRCNDE----------TKVYMNMMEIYA 195 (365)
Q Consensus 129 e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~-~--g~~~~a~~v~~ral~~~~~----------~~~~~~l~~~~~ 195 (365)
..++..|+..|...... +-+.+|..|+.-... + |. .....+++++++...+ ..+|+.+++.
T Consensus 7 ~~~~~~fE~~i~~y~gd---DPL~~w~~YI~W~e~~~P~g~-~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~-- 80 (152)
T 4a1g_A 7 ENVLQMLEAHMQSYKGN---DPLGEWERYIQWVEENFPENK-EYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEY-- 80 (152)
T ss_dssp HHHHHHHHHHTTSCCSS---CHHHHHHHHHHHHHTTCSSCT-HHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHh--
Confidence 34555666666643221 445666666664322 1 22 2345555555544311 2244444433
Q ss_pred HhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy17788 196 ASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNN 250 (365)
Q Consensus 196 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~ 250 (365)
..+..++|.-+.....+ ...+..|..+|.++...|++.+|..+|+.+++.
T Consensus 81 ----~~dp~~if~~L~~~~IG-~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 81 ----NSDLHQFFEFLYNHGIG-TLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp ----BSCHHHHHHHHHTTTTT-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ----cCCHHHHHHHHHHCCCc-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 13345555555443211 344555555555555555555555555555554
No 234
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=97.06 E-value=0.012 Score=47.92 Aligned_cols=127 Identities=9% Similarity=0.140 Sum_probs=87.1
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHHc---CCh-HHHHHHHHHHHhcCCCcc-------hHHHHHHHHHHHHHcCCHH
Q psy17788 206 TVKLLLKKAGQTHSSVNIYLQCATLLLRL---GQK-DTARHILQRGLNNLPPAV-------HVTLITRFALAENKFGDAS 274 (365)
Q Consensus 206 ~~~~al~~~~~~~~~~~~~~~~a~~~~~~---g~~-~~A~~~l~ral~~~p~~~-------~~~~~~~~a~~~~~~g~~e 274 (365)
.|+..+... ...+-..+|..|+.+.... |.. ..-..++++++..+.++. .+.+|..|+.+. ++
T Consensus 5 ~fE~~i~~~-~gdDPL~~w~~yIkW~e~~~p~~~~~s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~---~~-- 78 (164)
T 2wvi_A 5 AFEYEIRFY-TGNDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC---NE-- 78 (164)
T ss_dssp HHHHHCCCC-CSSCTHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC---SC--
T ss_pred HHHHHHhhc-CCCCChHHHHHHHHHHHHHCcCCCccchHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc---CC--
Confidence 355555422 2245568999999988762 222 234678899988865433 267777777663 44
Q ss_pred HHHHHHHHHHHh--CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhc
Q psy17788 275 RAQALLEHTLTS--YPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQY 341 (365)
Q Consensus 275 ~A~~~fe~~l~~--~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~ 341 (365)
++.+|.-+... --....+|..++.++...|++.+|..+|..++..+ ......+-.++-.|....
T Consensus 79 -p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~--A~P~~~L~~~~~~F~~R~ 144 (164)
T 2wvi_A 79 -PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQK--AEPLERLQSQHRQFQARV 144 (164)
T ss_dssp -HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CBSHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHH
Confidence 66677777654 33457789999999999999999999999999853 334667888888887654
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.90 E-value=0.012 Score=45.57 Aligned_cols=96 Identities=11% Similarity=0.042 Sum_probs=72.2
Q ss_pred CHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCCHHH---HHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHHcCChHHH
Q psy17788 166 TKESLQECLHEAVRCN-DETKVYMNMMEIYAASAQIRD---LESTVKLLLKKAGQTH-SSVNIYLQCATLLLRLGQKDTA 240 (365)
Q Consensus 166 ~~~~a~~v~~ral~~~-~~~~~~~~l~~~~~~~g~~~~---A~~~~~~al~~~~~~~-~~~~~~~~~a~~~~~~g~~~~A 240 (365)
....++.-|.+.+... ++..+-+.++-.+.++..... ++.+++..++.. .| ..-...+.+|..+++.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~--~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS--CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3456677777776644 567788888888888876655 788888877652 01 3567888999999999999999
Q ss_pred HHHHHHHHhcCCCcchHHHHHHH
Q psy17788 241 RHILQRGLNNLPPAVHVTLITRF 263 (365)
Q Consensus 241 ~~~l~ral~~~p~~~~~~~~~~~ 263 (365)
+.+++.+|+..|.+..+..+...
T Consensus 94 ~~~~~~lL~~eP~n~QA~~Lk~~ 116 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAKELERL 116 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999987665555433
No 236
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.87 E-value=0.029 Score=52.45 Aligned_cols=167 Identities=11% Similarity=-0.002 Sum_probs=121.1
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC------CHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHhcCCCCcHH
Q psy17788 150 RLNVWTSLLNLEHLYGTKESLQECLHEAVRCND------ETKVYMNMMEIYAAS-AQIRDLESTVKLLLKKAGQTHSSVN 222 (365)
Q Consensus 150 ~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~------~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~ 222 (365)
.-...+.++.++...|+.++...++.......+ ..++...+++.+... +..+.-.+++...++-. .....
T Consensus 18 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a---~~~~r 94 (394)
T 3txn_A 18 KEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA---KQEKR 94 (394)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH---HHTTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH---HHHHH
Confidence 346788899999999999999999887654432 123556677776654 55677778888888754 33334
Q ss_pred HHH------HHHHHHHHcCChHHHHHHHHHHHhcCCC----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----C
Q psy17788 223 IYL------QCATLLLRLGQKDTARHILQRGLNNLPP----AVHVTLITRFALAENKFGDASRAQALLEHTLTSY----P 288 (365)
Q Consensus 223 ~~~------~~a~~~~~~g~~~~A~~~l~ral~~~p~----~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~----P 288 (365)
.|+ .++.+|+..|++.+|..++.+.+..... ...+.++..-.+++...|+..+++.++.++.... |
T Consensus 95 ~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~ 174 (394)
T 3txn_A 95 TFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYC 174 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCC
Confidence 442 7899999999999999999998876433 2235566666788889999999999999886532 2
Q ss_pred C---ChhHHHHHHHHHH-hcCChHHHHHHHHHHHh
Q psy17788 289 A---RVDVWGVYVDMLV-KSDRVDLGRQVIQRAVT 319 (365)
Q Consensus 289 ~---~~~~w~~~~~~~~-~~g~~~~Ar~~~eral~ 319 (365)
. ...+...-|-++. ..+++..|...|-.+..
T Consensus 175 ~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 175 PPKVQGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 1 1233444566777 78999999999988875
No 237
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=96.86 E-value=0.021 Score=48.72 Aligned_cols=136 Identities=17% Similarity=0.218 Sum_probs=86.4
Q ss_pred CChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHH-Hh--C-C-HHHH
Q psy17788 96 VSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEH-LY--G-T-KESL 170 (365)
Q Consensus 96 ~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~-~~--g-~-~~~a 170 (365)
+++..+.+++...+.. -....++..+..|+..|..... ..+-+.+|..|+.... .+ | + ....
T Consensus 30 Rs~~~L~~~l~~~~~~-----------~~~~~l~~~r~~fE~~i~~~~~--~dDPL~~w~~YIkW~ee~yP~g~~~~s~L 96 (223)
T 4aez_C 30 HSASALAKSSSRNHTE-----------KEVAGLQKERMGHERKIETSES--LDDPLQVWIDYIKWTLDNFPQGETKTSGL 96 (223)
T ss_dssp CCHHHHHHHHTCCCCH-----------HHHHHHHHHHHHHHHHHHHGGG--SSCTHHHHHHHHHHHHHHCTTCCCTTTCH
T ss_pred CCHHHHHHHHhcccch-----------hHHHHHHHHHHHHHHHHHhccc--CCCChHHHHHHHHHHHHhCcCCCcchhhH
Confidence 5666777777765543 1234578888889998886321 1155889999988433 33 2 1 2346
Q ss_pred HHHHHHHHHcCCC----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHH
Q psy17788 171 QECLHEAVRCNDE----------TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTA 240 (365)
Q Consensus 171 ~~v~~ral~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A 240 (365)
..++++++....+ ..+|+.++++ .+....+|.-+.....+ ...+..|..+|.++...|++.+|
T Consensus 97 ~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~------~~~p~~if~~L~~~~IG-~~~AlfYe~wA~~lE~~g~~~~A 169 (223)
T 4aez_C 97 VTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY------IDEPVELFSFLAHHHIG-QESSIFYEEYANYFESRGLFQKA 169 (223)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT------CSCHHHHHHHHHHTTCS-TTBHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhcccccccCCHHHHHHHHHHHHc------cCCHHHHHHHHHHCCcc-hhHHHHHHHHHHHHHHcCCHHHH
Confidence 7788888876531 2355555542 34666777777665321 55677777777777777777777
Q ss_pred HHHHHHHHhcC
Q psy17788 241 RHILQRGLNNL 251 (365)
Q Consensus 241 ~~~l~ral~~~ 251 (365)
..+|+.+++..
T Consensus 170 ~~Vy~~Gi~~~ 180 (223)
T 4aez_C 170 DEVYQKGKRMK 180 (223)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHcC
Confidence 77777777654
No 238
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=96.77 E-value=0.02 Score=48.75 Aligned_cols=134 Identities=8% Similarity=0.128 Sum_probs=91.2
Q ss_pred CHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHc---CC--hHHHHHHHHHHHhcCCCcc-------hHHHHHHHHHH
Q psy17788 199 QIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRL---GQ--KDTARHILQRGLNNLPPAV-------HVTLITRFALA 266 (365)
Q Consensus 199 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~---g~--~~~A~~~l~ral~~~p~~~-------~~~~~~~~a~~ 266 (365)
.....+..|+..+.......+-..+|..|+.+.... |. -..-..+++||+..+.+.. .+.+|..|+.+
T Consensus 50 ~l~~~r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~ 129 (223)
T 4aez_C 50 GLQKERMGHERKIETSESLDDPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY 129 (223)
T ss_dssp HHHHHHHHHHHHHHHGGGSSCTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHc
Confidence 366677788888876322245578999999988774 32 1235678889888765433 26677777764
Q ss_pred HHHcCCHHHHHHHHHHHHHhC--CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHh
Q psy17788 267 ENKFGDASRAQALLEHTLTSY--PARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQ 340 (365)
Q Consensus 267 ~~~~g~~e~A~~~fe~~l~~~--P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~ 340 (365)
. +.++.+|.-+.... -....+|..|+.++...|++.+|..+|+.++..+ ......+-.+|-.|...
T Consensus 130 ---~---~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~--A~P~~rL~~~~~~F~~R 197 (223)
T 4aez_C 130 ---I---DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMK--AKPFLRFQQKYQQFTHR 197 (223)
T ss_dssp ---C---SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--CBSHHHHHHHHHHHHHH
T ss_pred ---c---CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CccHHHHHHHHHHHHHH
Confidence 2 45567777766543 3446778888888888888888888888888843 23356677777777654
No 239
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=96.76 E-value=0.034 Score=45.16 Aligned_cols=112 Identities=17% Similarity=0.231 Sum_probs=64.8
Q ss_pred chHHHHHHHHHHH-HHh--CCH-HHHHHHHHHHHHcCC----------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q psy17788 149 DRLNVWTSLLNLE-HLY--GTK-ESLQECLHEAVRCND----------ETKVYMNMMEIYAASAQIRDLESTVKLLLKKA 214 (365)
Q Consensus 149 ~~~~~w~~~~~l~-~~~--g~~-~~a~~v~~ral~~~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 214 (365)
+-+.+|..|+.-. ..+ |.. .....+++++++... -..+|+.++++. ....++|.-+....
T Consensus 17 DPL~~w~~yIkW~e~~~p~~~~~s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~------~~p~~if~~L~~~~ 90 (164)
T 2wvi_A 17 DPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC------NEPLDMYSYLHNQG 90 (164)
T ss_dssp CTHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC------SCHHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHHHCcCCCccchHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc------CCHHHHHHHHHHCC
Confidence 3466777777633 222 111 234566777766532 134666666552 33666777776653
Q ss_pred cCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Q psy17788 215 GQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAEN 268 (365)
Q Consensus 215 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~ 268 (365)
. ....+..|..+|.++...|++.+|..+|+.+++..... .-.+..++..|..
T Consensus 91 I-G~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P-~~~L~~~~~~F~~ 142 (164)
T 2wvi_A 91 I-GVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP-LERLQSQHRQFQA 142 (164)
T ss_dssp S-STTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS-HHHHHHHHHHHHH
T ss_pred c-chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHH
Confidence 2 25667788888888888888888888888888765331 2334344444443
No 240
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.28 E-value=0.093 Score=40.81 Aligned_cols=77 Identities=12% Similarity=0.011 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchH
Q psy17788 182 DETKVYMNMMEIYAASAQ---IRDLESTVKLLLKKAGQTH-SSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHV 257 (365)
Q Consensus 182 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~-~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~ 257 (365)
++..+-+.++-.+.++.. ..+++.+++.+++.. | ..-..++.+|..+++.|++++|+.+.+++|+..|.+..+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~---~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA---ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC---GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 455555666666666554 345666666666554 3 345666666777777777777777777777777766544
Q ss_pred HHHH
Q psy17788 258 TLIT 261 (365)
Q Consensus 258 ~~~~ 261 (365)
..+.
T Consensus 115 ~~Lk 118 (134)
T 3o48_A 115 GALK 118 (134)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 241
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.09 E-value=0.13 Score=40.60 Aligned_cols=74 Identities=12% Similarity=0.003 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchH
Q psy17788 182 DETKVYMNMMEIYAASAQ---IRDLESTVKLLLKKAGQTH-SSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHV 257 (365)
Q Consensus 182 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~-~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~ 257 (365)
++..+-+.++-.+.++.. ..+++.+++..++.. | ..-...+.+|..+++.|++++|+.+.+.+|+..|.+..+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~---~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA---ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC---CSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---ccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 444555555555555543 234555555555543 3 234455555555555666666666666666555555443
Q ss_pred H
Q psy17788 258 T 258 (365)
Q Consensus 258 ~ 258 (365)
.
T Consensus 114 ~ 114 (144)
T 1y8m_A 114 G 114 (144)
T ss_dssp H
T ss_pred H
Confidence 3
No 242
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.08 E-value=0.066 Score=43.39 Aligned_cols=117 Identities=12% Similarity=0.078 Sum_probs=70.0
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCC------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCcchHH
Q psy17788 188 MNMMEIYAASAQIRDLESTVKLLLKKAGQTHS------SVNIYLQCATLLLRLGQKDTARHILQRGLNN---LPPAVHVT 258 (365)
Q Consensus 188 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~---~p~~~~~~ 258 (365)
..-+..+...|.++.|+-+...++.....++. ..++...+|+.++..|+|..|...|++||+. .++.+...
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~ 103 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVR 103 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 44466667778888888888887766411111 0236778888888888888888888888664 33322111
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy17788 259 LITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAV 318 (365)
Q Consensus 259 ~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral 318 (365)
...+. ..-...... .+...++-+..+.|+++.|+++.|..+++.+-
T Consensus 104 --~~~~~-----------~ss~p~s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 104 --PSTGN-----------SASTPQSQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp --------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred --ccccc-----------cCCCccccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 00000 000000011 13345777889999999999999999998763
No 243
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.06 E-value=0.11 Score=40.38 Aligned_cols=79 Identities=11% Similarity=0.081 Sum_probs=59.6
Q ss_pred CCcHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q psy17788 218 HSSVNIYLQCATLLLRLGQK---DTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVW 294 (365)
Q Consensus 218 ~~~~~~~~~~a~~~~~~g~~---~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w 294 (365)
..++.+-+.||-.+.+..+. .+++.+++..+...|.. .-..++.+|.-+++.|++++|+.+.+.+|...|.+..+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~-~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR-RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 56778888888888887654 46778888888777643 345667778888888888888888888888888886655
Q ss_pred HHH
Q psy17788 295 GVY 297 (365)
Q Consensus 295 ~~~ 297 (365)
..-
T Consensus 116 ~Lk 118 (134)
T 3o48_A 116 ALK 118 (134)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.85 E-value=0.13 Score=52.23 Aligned_cols=59 Identities=12% Similarity=0.021 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17788 223 IYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHT 283 (365)
Q Consensus 223 ~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~ 283 (365)
+...-+.|+...|+++-|+.+-++|+.+.|.. ...|..++.+|...|+++.|.-.+..+
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPse--F~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDS--FESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC--HHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchh--hHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34444556666666666666666666666663 445566666666666666665554433
No 245
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.82 E-value=0.32 Score=49.31 Aligned_cols=75 Identities=9% Similarity=-0.040 Sum_probs=55.7
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHc
Q psy17788 155 TSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRL 234 (365)
Q Consensus 155 ~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~ 234 (365)
...+.+....|..+.|..+.+ +.. .-..+....|+++.|.++.+ . ..++..|..+|..++..
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~-------~~~---~~f~~~l~~~~~~~A~~~~~-----~---~~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP-------DQD---QKFELALKVGQLTLARDLLT-----D---ESAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC-------CHH---HHHHHHHHHTCHHHHHHHHT-----T---CCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCC-------Ccc---hheehhhhcCCHHHHHHHHH-----h---hCcHhHHHHHHHHHHHc
Confidence 556666777777777665542 221 11344567899999988753 2 56889999999999999
Q ss_pred CChHHHHHHHHHH
Q psy17788 235 GQKDTARHILQRG 247 (365)
Q Consensus 235 g~~~~A~~~l~ra 247 (365)
|+++.|..+|.++
T Consensus 695 ~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 695 FNFKLAIEAFTNA 707 (814)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHc
Confidence 9999999999986
No 246
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.81 E-value=0.14 Score=51.95 Aligned_cols=129 Identities=7% Similarity=-0.013 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHcccC-HHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHc--------C
Q psy17788 112 SELWVKYMAYHLQATE-IEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYG-TKESLQECLHEAVRC--------N 181 (365)
Q Consensus 112 ~~~w~~~~~~~~~~~~-~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g-~~~~a~~v~~ral~~--------~ 181 (365)
..+--.++.+....++ ++.|+.++++.....|.. ...+...++.+....+ ..-+|..++.+++.. .
T Consensus 248 N~L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~----~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~ 323 (754)
T 4gns_B 248 NYLMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIH----DIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLP 323 (754)
T ss_dssp SHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHHHHHhhCCch----hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhc
Confidence 4555566666655666 688999999988877731 2223334444332222 334577777777642 1
Q ss_pred C----------CH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy17788 182 D----------ET-KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRG 247 (365)
Q Consensus 182 ~----------~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ra 247 (365)
+ .. .+...=++++...|+++-|.++-++++... |.+-..|..++.+|...|+++.|+-.+.-+
T Consensus 324 ~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a---PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 324 PRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA---LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC---chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1 11 122223778888999999999999999998 999999999999999999999998777665
No 247
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.76 E-value=0.61 Score=47.17 Aligned_cols=75 Identities=9% Similarity=-0.001 Sum_probs=52.8
Q ss_pred HHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy17788 116 VKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYA 195 (365)
Q Consensus 116 ~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~ 195 (365)
...+.++.+.|..+.|..+.+ .| . .-..+....|+++.|.++.+ ..++...|..++..+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~-----~~--------~---~~f~~~l~~~~~~~A~~~~~----~~~~~~~W~~la~~al 692 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP-----DQ--------D---QKFELALKVGQLTLARDLLT----DESAEMKWRALGDASL 692 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC-----CH--------H---HHHHHHHHHTCHHHHHHHHT----TCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCC-----Cc--------c---hheehhhhcCCHHHHHHHHH----hhCcHhHHHHHHHHHH
Confidence 555566666777666665442 11 0 11234566788888888743 3467889999999999
Q ss_pred HhCCHHHHHHHHHHH
Q psy17788 196 ASAQIRDLESTVKLL 210 (365)
Q Consensus 196 ~~g~~~~A~~~~~~a 210 (365)
+.|+++.|..+|.++
T Consensus 693 ~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 693 QRFNFKLAIEAFTNA 707 (814)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHc
Confidence 999999999999865
No 248
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.75 E-value=0.45 Score=37.45 Aligned_cols=78 Identities=12% Similarity=0.091 Sum_probs=59.7
Q ss_pred CCcHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q psy17788 218 HSSVNIYLQCATLLLRLGQK---DTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVW 294 (365)
Q Consensus 218 ~~~~~~~~~~a~~~~~~g~~---~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w 294 (365)
..++++-+.||-.+.+..+. .+++.+++..+...|.. .-..++.+|.-+++.|++++|+.+.+.+|+..|.+..+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~-~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR-RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCST-HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccc-hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 56788888888888887654 46778888888777753 345667778888888999999999999998888886654
Q ss_pred HH
Q psy17788 295 GV 296 (365)
Q Consensus 295 ~~ 296 (365)
..
T Consensus 115 ~L 116 (144)
T 1y8m_A 115 AL 116 (144)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 249
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.24 E-value=0.34 Score=45.21 Aligned_cols=106 Identities=22% Similarity=0.111 Sum_probs=75.3
Q ss_pred HhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHH
Q psy17788 196 ASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQK-DTARHILQRGLNNLPPAVHVTLITRFALAENKFGDAS 274 (365)
Q Consensus 196 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~-~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e 274 (365)
..|+.+.+...+.+++..+.+.+ -+.+. ...+ ...+..++.. .+.++..++..+...|++.
T Consensus 127 ~~~~~~~a~~~l~~Al~L~rG~~-L~~~~---------~~~w~~~~r~~l~~~--------~~~a~~~~~~~~l~~g~~~ 188 (388)
T 2ff4_A 127 AAGRFEQASRHLSAALREWRGPV-LDDLR---------DFQFVEPFATALVED--------KVLAHTAKAEAEIACGRAS 188 (388)
T ss_dssp HTTCHHHHHHHHHHHHTTCCSST-TGGGT---------TSTTHHHHHHHHHHH--------HHHHHHHHHHHHHHTTCHH
T ss_pred hCCCHHHHHHHHHHHHHhcCCCC-CCCCC---------chhHHHHHHHHHHHH--------HHHHHHHHHHHHHHCCCHH
Confidence 45788889999999998873211 01100 0111 1112222221 1334556677888999999
Q ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788 275 RAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVT 319 (365)
Q Consensus 275 ~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~ 319 (365)
.+...+..++..+|-+-.+|..+..++...|+..+|...|+++..
T Consensus 189 ~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 189 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998765
No 250
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.15 E-value=2.3 Score=40.35 Aligned_cols=193 Identities=14% Similarity=0.059 Sum_probs=100.2
Q ss_pred ccCHHHHHHHHHHHHhhc-cCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CHHHHHHH----HHHHHHhC
Q psy17788 125 ATEIEKARSIARRALTVI-NIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND-ETKVYMNM----MEIYAASA 198 (365)
Q Consensus 125 ~~~~e~A~~~~~raL~~~-p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~-~~~~~~~l----~~~~~~~g 198 (365)
.|+++.|...+-...+.. ...+......+....+.++...|+++.+...+.-...... ...+...+ ..+.....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 467777776554333322 1122223356666777777777777777666554433322 12222222 22222333
Q ss_pred CHHHHHHHHHHHHHHhcCC---CC-----cHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCCcchHHHHHHHHHH
Q psy17788 199 QIRDLESTVKLLLKKAGQT---HS-----SVNIYLQCATLLLRLGQKDTARHILQRGLNN----LPPAVHVTLITRFALA 266 (365)
Q Consensus 199 ~~~~A~~~~~~al~~~~~~---~~-----~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~----~p~~~~~~~~~~~a~~ 266 (365)
..+. +.....+...... .- ...+...++.++...|++.+|..++...... .+....+.++..-..+
T Consensus 109 ~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 109 SLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp TTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred chhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 2221 1111222111000 10 3445667777777778888877777765432 2333335566666777
Q ss_pred HHHcCCHHHHHHHHHHHHH---hCCCChh----HHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788 267 ENKFGDASRAQALLEHTLT---SYPARVD----VWGVYVDMLVKSDRVDLGRQVIQRAVT 319 (365)
Q Consensus 267 ~~~~g~~e~A~~~fe~~l~---~~P~~~~----~w~~~~~~~~~~g~~~~Ar~~~eral~ 319 (365)
+...|++.+|..++.++.. ..+..++ .....|.++...+++..|-..|-.+..
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 7777788888777777632 2333333 334445555666677777666666654
No 251
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.74 E-value=0.15 Score=48.39 Aligned_cols=103 Identities=18% Similarity=0.182 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--cch--HHHHH
Q psy17788 186 VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPP--AVH--VTLIT 261 (365)
Q Consensus 186 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~--~~~--~~~~~ 261 (365)
++..++.+|.+.|++++|.++|.++.........-..++...++++...+++..+..++.++...... +.. ..+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 56778888888888888888888887765433555678888888888888888888888887554221 111 12333
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17788 262 RFALAENKFGDASRAQALLEHTLTSYP 288 (365)
Q Consensus 262 ~~a~~~~~~g~~e~A~~~fe~~l~~~P 288 (365)
..|.++...+++..|...|-.++..+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 335556667888888888877776554
No 252
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.00 E-value=2.3 Score=40.30 Aligned_cols=175 Identities=9% Similarity=0.039 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHh-hccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----cCCCHH--
Q psy17788 113 ELWVKYMAYHLQATEIEKARSIARRALT-VINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVR----CNDETK-- 185 (365)
Q Consensus 113 ~~w~~~~~~~~~~~~~e~A~~~~~raL~-~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~----~~~~~~-- 185 (365)
.+...++..+...|++.+|..+...... +....+......++..-+.++...+++..|..++.++.. ..+++.
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk 217 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLK 217 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHH
Confidence 5678899999999999999999988654 333333345678888999999999999999999998742 233332
Q ss_pred --HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHH---HHHHHHHHcC-ChHHHHHHHHHHHhcCCCcchHHH
Q psy17788 186 --VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYL---QCATLLLRLG-QKDTARHILQRGLNNLPPAVHVTL 259 (365)
Q Consensus 186 --~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---~~a~~~~~~g-~~~~A~~~l~ral~~~p~~~~~~~ 259 (365)
.+...+.++...++|.+|-..|..+...+.. ..++.-|. .++-++.-.. ....-..++.+.. ..+....+..
T Consensus 218 ~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~-~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~-~~~~~~~l~~ 295 (445)
T 4b4t_P 218 LEYYNLLVKISLHKREYLEVAQYLQEIYQTDAI-KSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQ-NDNNLKKLES 295 (445)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHH-HHSSCHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccc-cCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHh-hcccccccHH
Confidence 4455688888999999999999999876511 12333222 2222222211 1111111222221 1222234555
Q ss_pred HHHHHHHHHH--cCCHHHHHHHHHHHHHhCCC
Q psy17788 260 ITRFALAENK--FGDASRAQALLEHTLTSYPA 289 (365)
Q Consensus 260 ~~~~a~~~~~--~g~~e~A~~~fe~~l~~~P~ 289 (365)
+..+...+.. ..++......|...+..+|.
T Consensus 296 ~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~ 327 (445)
T 4b4t_P 296 QESLVKLFTTNELMRWPIVQKTYEPVLNEDDL 327 (445)
T ss_dssp HHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCS
T ss_pred HHHHHHHHHhchHhhhHHHHHHHHHHhcccch
Confidence 6666665544 35667777777766665553
No 253
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.65 E-value=2.5 Score=34.58 Aligned_cols=125 Identities=11% Similarity=0.076 Sum_probs=68.8
Q ss_pred HHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHH
Q psy17788 195 AASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDAS 274 (365)
Q Consensus 195 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e 274 (365)
...|+++.|.++.+.+ ++...|..+|...+..|+++-|..+|+++- + + .++..++.-.|+.+
T Consensus 16 L~lg~l~~A~e~a~~l--------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~----D---~---~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL--------NDSITWERLIQEALAQGNASLAEMIYQTQH----S---F---DKLSFLYLVTGDVN 77 (177)
T ss_dssp HHTTCHHHHHHHHHHH--------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT----C---H---HHHHHHHHHHTCHH
T ss_pred HhcCCHHHHHHHHHHh--------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC----C---H---HHHHHHHHHhCCHH
Confidence 4567777777665432 356777777777777777777777777632 1 1 12223344556665
Q ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy17788 275 RAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKE 353 (365)
Q Consensus 275 ~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~k 353 (365)
.-..+-+.+.... + ++....++.-.|+++++.++|.+.- . |-.-+-+.+.+|-.+.+..+.+.
T Consensus 78 ~L~kla~iA~~~g-~----~n~af~~~l~lGdv~~~i~lL~~~~------r-----~~eA~~~A~t~g~~~~a~~~~~~ 140 (177)
T 3mkq_B 78 KLSKMQNIAQTRE-D----FGSMLLNTFYNNSTKERSSIFAEGG------S-----LPLAYAVAKANGDEAAASAFLEQ 140 (177)
T ss_dssp HHHHHHHHHHHTT-C----HHHHHHHHHHHTCHHHHHHHHHHTT------C-----HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCc-c----HHHHHHHHHHcCCHHHHHHHHHHCC------C-----hHHHHHHHHHcCcHHHHHHHHHH
Confidence 5554444443221 1 1222233445677777777775441 1 23334445567776666666543
No 254
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.63 E-value=1.1 Score=41.70 Aligned_cols=18 Identities=28% Similarity=0.167 Sum_probs=14.4
Q ss_pred hCCHHHHHHHHHHHHHcC
Q psy17788 164 YGTKESLQECLHEAVRCN 181 (365)
Q Consensus 164 ~g~~~~a~~v~~ral~~~ 181 (365)
.|+.+.+...+.+|+...
T Consensus 128 ~~~~~~a~~~l~~Al~L~ 145 (388)
T 2ff4_A 128 AGRFEQASRHLSAALREW 145 (388)
T ss_dssp TTCHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 467888888888888775
No 255
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.36 E-value=1.1 Score=42.29 Aligned_cols=101 Identities=12% Similarity=0.122 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC---CCHHH--
Q psy17788 112 SELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCN---DETKV-- 186 (365)
Q Consensus 112 ~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~---~~~~~-- 186 (365)
..++..++.++.+.|+++.|..+|.++....... ....++++..+.++...+++..+...+.++-... ++...
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~--~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~ 208 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIST--GAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRN 208 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCC--CSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCh--HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHH
Confidence 3578899999999999999999999988743322 2678999999999999999999999999986542 22221
Q ss_pred --HHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q psy17788 187 --YMNMMEIYAASAQIRDLESTVKLLLKKA 214 (365)
Q Consensus 187 --~~~l~~~~~~~g~~~~A~~~~~~al~~~ 214 (365)
....+.++...++|..|-..|-.++..+
T Consensus 209 ~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 209 RYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 2223555667899999999999888776
No 256
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=93.28 E-value=4.9 Score=39.78 Aligned_cols=189 Identities=12% Similarity=0.049 Sum_probs=112.8
Q ss_pred HcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHH
Q psy17788 123 LQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRD 202 (365)
Q Consensus 123 ~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~ 202 (365)
+...+.+.|...+.+.....++.. .+...+|..++.-....+....+...+.+......+..+.--.+..-.+.|++..
T Consensus 225 lar~d~~~A~~~~~~~~~~~~~~~-~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 225 VARQDAENARLMIPSLAQAQQLNE-DQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HHHHCHHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCHHHHHHHHHhhhhccCCCH-HHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHHHHCCCHHH
Confidence 445578888888877655433321 1222333332222222332445666666665555544443223334456799999
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----------------C---C-c---chHH
Q psy17788 203 LESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNL-----------------P---P-A---VHVT 258 (365)
Q Consensus 203 A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~-----------------p---~-~---~~~~ 258 (365)
|...|.++-... .......+=.|..+...|+.++|..+|.++.... | . . ..+.
T Consensus 304 a~~~~~~l~~~~---~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~ 380 (618)
T 1qsa_A 304 LNTWLARLPMEA---KEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALT 380 (618)
T ss_dssp HHHHHHHSCTTG---GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHH
T ss_pred HHHHHHHccccc---cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhc
Confidence 999998775532 3456666667778888999999999998876521 0 0 0 0001
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q psy17788 259 --LITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRA 317 (365)
Q Consensus 259 --~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~era 317 (365)
-....+..+...|....|+..+..++...+ ..-...++.+....|..+.+.....+.
T Consensus 381 ~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~--~~~~~~la~~a~~~~~~~~~v~~~~~~ 439 (618)
T 1qsa_A 381 QGPEMARVRELMYWNLDNTARSEWANLVKSKS--KTEQAQLARYAFNNQWWDLSVQATIAG 439 (618)
T ss_dssp HSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred cChHHHHHHHHHHCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 112335567788888899888888776533 344456677777788887776555443
No 257
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.84 E-value=4.3 Score=39.09 Aligned_cols=169 Identities=12% Similarity=0.129 Sum_probs=88.5
Q ss_pred CHHHHHHHHHHHHHhCCHHH----------HHHHHHHHHHHhcCC---CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy17788 183 ETKVYMNMMEIYAASAQIRD----------LESTVKLLLKKAGQT---HSSVNIYLQCATLLLRLGQKDTARHILQRGLN 249 (365)
Q Consensus 183 ~~~~~~~l~~~~~~~g~~~~----------A~~~~~~al~~~~~~---~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~ 249 (365)
...+|+.+..++...|+... .+..+-.+++..... .....+|..+.+.|+..+.++.|..+..++.
T Consensus 180 ~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~- 258 (523)
T 4b4t_S 180 NAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE- 258 (523)
T ss_dssp -----------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc-
Confidence 34577777777777776543 333444444433211 2336788999999999999999999999884
Q ss_pred cCCCc-----chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh-------HHHHHHHHHHhcCChHHHHHHHHHH
Q psy17788 250 NLPPA-----VHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVD-------VWGVYVDMLVKSDRVDLGRQVIQRA 317 (365)
Q Consensus 250 ~~p~~-----~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~-------~w~~~~~~~~~~g~~~~Ar~~~era 317 (365)
+|.. ..+..++..|.+..-.+++.+|...|..++...|.+.. +...++-+..-.|++.. +.+|.
T Consensus 259 -fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~iP~-r~lf~-- 334 (523)
T 4b4t_S 259 -YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIPE-LSFFH-- 334 (523)
T ss_dssp -SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHHTCCCC-HHHHT--
T ss_pred -CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhcCCCCC-hHHhh--
Confidence 4432 23555566688888999999999999999988875421 22122222222466543 33332
Q ss_pred HhCCCCCCCcHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHHHHhhh
Q psy17788 318 VTQKLPPKKLKPLYMKWLKLE--EQYGDAEAVENVKKEIEQYVRNSK 362 (365)
Q Consensus 318 l~~~l~~~~~~~~~~~~l~~e--~~~G~~~~a~~v~~kA~~~v~~~~ 362 (365)
.+.+.....-|..+. -+.||......+.++--..+.+.+
T Consensus 335 ------q~~l~~~L~pY~~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dg 375 (523)
T 4b4t_S 335 ------QSNMQKSLLPYYHLTKAVKLGDLKKFTSTITKYKQLLLKDD 375 (523)
T ss_dssp ------TTSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTT
T ss_pred ------chhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhcceeccCC
Confidence 112222222333321 245888877777766666555543
No 258
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.33 E-value=2.8 Score=40.32 Aligned_cols=141 Identities=11% Similarity=0.177 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHH--hhc---cCcc-ccchHHHHHHHHHHHHHhCCHHH----------HHHHHH
Q psy17788 112 SELWVKYMAYHLQATEIEKARSIARRAL--TVI---NIRN-EEDRLNVWTSLLNLEHLYGTKES----------LQECLH 175 (365)
Q Consensus 112 ~~~w~~~~~~~~~~~~~e~A~~~~~raL--~~~---p~~~-~~~~~~~w~~~~~l~~~~g~~~~----------a~~v~~ 175 (365)
.++++-...++++.+++++|..+-...+ ..+ ..|. ..-...+|+-|..++...|.... .+..+-
T Consensus 136 ~y~~lL~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll 215 (523)
T 4b4t_S 136 CFMHLLVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMM 215 (523)
T ss_dssp -------------------------------------------------------------------CHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHH
Confidence 3555555556678888888877665444 111 1110 11235678777776666664332 333444
Q ss_pred HHHHc-----CCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCC-CCc---HHHHHHHHHHHHHcCChHHHHHHH
Q psy17788 176 EAVRC-----NDE--TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQT-HSS---VNIYLQCATLLLRLGQKDTARHIL 244 (365)
Q Consensus 176 ral~~-----~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~---~~~~~~~a~~~~~~g~~~~A~~~l 244 (365)
.+++. ++. ..++..+...|...+.++.|..+..++. |+.. ..+ ....+.+|.++.-.++|.+|...|
T Consensus 216 ~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L 293 (523)
T 4b4t_S 216 KFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYI 293 (523)
T ss_dssp HHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 44433 222 3477888999999999999999999885 5211 111 334556688888899999999999
Q ss_pred HHHHhcCCCc
Q psy17788 245 QRGLNNLPPA 254 (365)
Q Consensus 245 ~ral~~~p~~ 254 (365)
..|+...|..
T Consensus 294 ~~A~rkap~~ 303 (523)
T 4b4t_S 294 IAAIRKAPHN 303 (523)
T ss_dssp HHHTSSCSCS
T ss_pred HHHHHhCCcc
Confidence 9999887754
No 259
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=91.81 E-value=4.5 Score=32.98 Aligned_cols=102 Identities=9% Similarity=0.143 Sum_probs=54.5
Q ss_pred HHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Q psy17788 120 AYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQ 199 (365)
Q Consensus 120 ~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~ 199 (365)
...++.|+++.|..+.+.. +....|..++......|+++-|..+|.++-. +-.+.-+|.-+|+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l----------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-------~~~L~~Ly~~tg~ 75 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL----------NDSITWERLIQEALAQGNASLAEMIYQTQHS-------FDKLSFLYLVTGD 75 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH----------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-------HHHHHHHHHHHTC
T ss_pred HHHHhcCCHHHHHHHHHHh----------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-------HHHHHHHHHHhCC
Confidence 3345666777666665422 2346677777777777777777777666521 2233344555666
Q ss_pred HHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy17788 200 IRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQR 246 (365)
Q Consensus 200 ~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~r 246 (365)
.+...++-+.+.... +.. .....++-.|+++++..+|.+
T Consensus 76 ~e~L~kla~iA~~~g-----~~n---~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 76 VNKLSKMQNIAQTRE-----DFG---SMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHHHTT-----CHH---HHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCc-----cHH---HHHHHHHHcCCHHHHHHHHHH
Confidence 655555444444321 111 112233445666666666644
No 260
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=90.55 E-value=3.1 Score=36.42 Aligned_cols=56 Identities=14% Similarity=0.155 Sum_probs=35.0
Q ss_pred HHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q psy17788 195 AASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPP 253 (365)
Q Consensus 195 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~ 253 (365)
.+.|..+++++.....++.. |.+...-..+.++++-.|++++|..-++-+.+..|.
T Consensus 8 l~~g~L~~al~~~~~~VR~~---P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKAS---PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HhCCCHHHHHHHHHHHHHhC---CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 34556666666666666665 666666666666666666666666666666666665
No 261
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=88.05 E-value=13 Score=32.49 Aligned_cols=120 Identities=17% Similarity=0.145 Sum_probs=79.7
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHH
Q psy17788 230 LLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDL 309 (365)
Q Consensus 230 ~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~ 309 (365)
-+++.|.+++|+......++..|.+...+ ..+.+++.-.|++++|..-++.+.+.+|.....-..|-....
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R--~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~------- 76 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLR--SSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK------- 76 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHH--HHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH-------
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHH-------
Confidence 45677999999999999999999975544 566899999999999999999999999997655444433221
Q ss_pred HHHHHHHHHhCCCCC---CCcHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHHH
Q psy17788 310 GRQVIQRAVTQKLPP---KKLKPLYMKWLKLE--EQYGDAEAVENVKKEIEQYV 358 (365)
Q Consensus 310 Ar~~~eral~~~l~~---~~~~~~~~~~l~~e--~~~G~~~~a~~v~~kA~~~v 358 (365)
|...=..+..-.-.| ..........+... ...|+.+.+.....+|.+..
T Consensus 77 aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~a 130 (273)
T 1zbp_A 77 AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 130 (273)
T ss_dssp HHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Confidence 111111222211011 11222223333332 23699999999999998764
No 262
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=85.94 E-value=27 Score=37.17 Aligned_cols=115 Identities=11% Similarity=-0.000 Sum_probs=69.5
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcC------------------------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy17788 156 SLLNLEHLYGTKESLQECLHEAVRCN------------------------DETKVYMNMMEIYAASAQIRDLESTVKLLL 211 (365)
Q Consensus 156 ~~~~l~~~~g~~~~a~~v~~ral~~~------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 211 (365)
-.+.++...|++++|...|++|-... .-..-|.+++.++.+.|-++.+.+.-..++
T Consensus 847 l~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi 926 (1139)
T 4fhn_B 847 LKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLAD 926 (1139)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34456666777777777776652110 012345777888888888999998888888
Q ss_pred HHhcCCCCc--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCH
Q psy17788 212 KKAGQTHSS--VNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDA 273 (365)
Q Consensus 212 ~~~~~~~~~--~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~ 273 (365)
........+ ..+|..+-..++..|++++|-..+-..=. +.. .-..+.++..-....|..
T Consensus 927 ~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd--~~~-r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 927 ASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST--TPL-KKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp HHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH--SSS-CHHHHHHHHHHHHHHCCH
T ss_pred HhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC--HHH-HHHHHHHHHHHHHhCCCh
Confidence 765211111 12688888888888999988766643211 111 123455555544444443
No 263
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=85.18 E-value=34 Score=36.38 Aligned_cols=143 Identities=9% Similarity=-0.044 Sum_probs=94.6
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC----------------
Q psy17788 190 MMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPP---------------- 253 (365)
Q Consensus 190 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~---------------- 253 (365)
++..+...|.++-++++ +.-. +.++-.-+..|.+++..|++++|..+|+++-.....
T Consensus 818 l~~~l~~~~~~~~~~~l----~~~~---~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQL----IGWL---NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHSCTTHHHHH----HHHS---CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHH----hhhc---cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 34445556666655442 2333 667766788899999999999999999987433211
Q ss_pred -----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q psy17788 254 -----AVHVTLITRFALAENKFGDASRAQALLEHTLTSYPAR-----VDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLP 323 (365)
Q Consensus 254 -----~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~-----~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~ 323 (365)
......|.+.+.+..+.|.++.+...-..++..-+.+ ..+|..+-......|++++|-..+-..-.
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd---- 966 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST---- 966 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH----
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC----
Confidence 0012345666778888999999999999999875533 23788888888999999998777755432
Q ss_pred CCCcHHHHHHHHHHHHhcCC
Q psy17788 324 PKKLKPLYMKWLKLEEQYGD 343 (365)
Q Consensus 324 ~~~~~~~~~~~l~~e~~~G~ 343 (365)
....+.....++.-....|.
T Consensus 967 ~~~r~~cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 967 TPLKKSCLLDFVNQLTKQGK 986 (1139)
T ss_dssp SSSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHhCCC
Confidence 12334555555443333333
No 264
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=85.11 E-value=4.3 Score=38.98 Aligned_cols=73 Identities=8% Similarity=-0.006 Sum_probs=34.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHH
Q psy17788 224 YLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYV 298 (365)
Q Consensus 224 ~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~ 298 (365)
.+.+|++..-...+..|+.+|.+|+...|... ..+.++|.+....|+.-.|.-+|-+++....-.+.++..+.
T Consensus 155 l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G--~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~ 227 (497)
T 1ya0_A 155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSNG--QPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQ 227 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBS--HHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHhCCCCC--chHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHH
Confidence 33444444444445555555555555555532 23444555555555555555555555443333334444333
No 265
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=83.82 E-value=14 Score=28.94 Aligned_cols=57 Identities=23% Similarity=0.331 Sum_probs=36.0
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy17788 191 MEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNN 250 (365)
Q Consensus 191 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~ 250 (365)
.+.+...|+-++..+++...+... +.++.+.+.++..|.+.|+..+|..++.+|-+.
T Consensus 98 Ld~lv~~~KkDqLdki~~~~l~n~---~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 98 LDILVIQGKRDKLEEIGREILKNN---EVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC--C---CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhccHhHHHHHHHHHhccC---CCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 445556667777666666655443 556777777777777777777777776666543
No 266
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=79.01 E-value=14 Score=35.42 Aligned_cols=78 Identities=12% Similarity=0.040 Sum_probs=58.6
Q ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCHHHHHHHHH
Q psy17788 114 LWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCN-DETKVYMNMME 192 (365)
Q Consensus 114 ~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~-~~~~~~~~l~~ 192 (365)
..+.+|+.......++.|+..|.+|+...| .....+..++-+....|+.-.+.-.|-|++... |...+..++..
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P-----~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~ 228 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVP-----SNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQK 228 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCC-----CCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHH
Confidence 456677777777778889999999999888 667888888888888888877888888887653 55566666665
Q ss_pred HHHH
Q psy17788 193 IYAA 196 (365)
Q Consensus 193 ~~~~ 196 (365)
++.+
T Consensus 229 ~f~~ 232 (497)
T 1ya0_A 229 ALSK 232 (497)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 267
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=70.41 E-value=59 Score=28.95 Aligned_cols=20 Identities=5% Similarity=-0.110 Sum_probs=12.4
Q ss_pred HhcCCHHHHHHHHHHHHHHH
Q psy17788 339 EQYGDAEAVENVKKEIEQYV 358 (365)
Q Consensus 339 ~~~G~~~~a~~v~~kA~~~v 358 (365)
...|+...|..+++.-.+.+
T Consensus 199 L~l~n~~~A~~~~~~f~~~~ 218 (312)
T 2wpv_A 199 LFISNISFAHESKDIFLERF 218 (312)
T ss_dssp HHTTBHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHH
Confidence 35677777777766555444
No 268
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=66.40 E-value=15 Score=25.08 Aligned_cols=35 Identities=11% Similarity=0.088 Sum_probs=24.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHH
Q psy17788 262 RFALAENKFGDASRAQALLEHTLTSYPARVDVWGV 296 (365)
Q Consensus 262 ~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~ 296 (365)
..|..+...|+.++|...|-+|+..+|.-.++...
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i 56 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQV 56 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44666777788888888888888877765554443
No 269
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=58.60 E-value=57 Score=25.92 Aligned_cols=56 Identities=11% Similarity=0.084 Sum_probs=40.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC---hhHHHHHHH-H-----HHhcCChHHHHHHHHHHHh
Q psy17788 264 ALAENKFGDASRAQALLEHTLTSYPAR---VDVWGVYVD-M-----LVKSDRVDLGRQVIQRAVT 319 (365)
Q Consensus 264 a~~~~~~g~~e~A~~~fe~~l~~~P~~---~~~w~~~~~-~-----~~~~g~~~~Ar~~~eral~ 319 (365)
+..++..|++=+|..++|.+....|.. -.+|..+++ + ....|+...|+.++.+++.
T Consensus 39 ~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 39 GVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455566688888999998888776543 456766666 3 2356888888888888876
No 270
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=58.25 E-value=74 Score=25.86 Aligned_cols=62 Identities=6% Similarity=-0.043 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH--cC--C--------------CHH-HHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy17788 152 NVWTSLLNLEHLYGTKESLQECLHEAVR--CN--D--------------ETK-VYMNMMEIYAASAQIRDLESTVKLLLK 212 (365)
Q Consensus 152 ~~w~~~~~l~~~~g~~~~a~~v~~ral~--~~--~--------------~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~ 212 (365)
.++..++ ++....++..|+..++..+. .. | +.+ .+..++.++.+.|..++|+..|.+...
T Consensus 64 s~YYk~L-Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~ 142 (242)
T 3kae_A 64 SKYYESL-CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFG 142 (242)
T ss_dssp HHHHHHH-HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcC
Confidence 4444433 45667789999999999883 21 1 223 446779999999999999999998887
Q ss_pred Hh
Q psy17788 213 KA 214 (365)
Q Consensus 213 ~~ 214 (365)
..
T Consensus 143 ~~ 144 (242)
T 3kae_A 143 KS 144 (242)
T ss_dssp HC
T ss_pred Cc
Confidence 75
No 271
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=57.30 E-value=40 Score=22.91 Aligned_cols=27 Identities=19% Similarity=0.112 Sum_probs=12.1
Q ss_pred HHHHHHHcccCHHHHHHHHHHHHhhcc
Q psy17788 117 KYMAYHLQATEIEKARSIARRALTVIN 143 (365)
Q Consensus 117 ~~~~~~~~~~~~e~A~~~~~raL~~~p 143 (365)
..+..++..|+++.|...|-+|+...|
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~ 48 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCG 48 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 334444444444444444444444333
No 272
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=55.56 E-value=1.4e+02 Score=28.12 Aligned_cols=65 Identities=8% Similarity=0.039 Sum_probs=37.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHH--------HhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC
Q psy17788 226 QCATLLLRLGQKDTARHILQRG--------LNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTS-YPAR 290 (365)
Q Consensus 226 ~~a~~~~~~g~~~~A~~~l~ra--------l~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~-~P~~ 290 (365)
.+..+|++.|+..-+..++.-. +...|....+...+..|.++...+++.+|...|..|+.. .|..
T Consensus 181 ~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 181 KLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 3345566667766666665322 111233334555556677777777777777777777776 5543
No 273
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=54.59 E-value=58 Score=25.90 Aligned_cols=58 Identities=12% Similarity=0.185 Sum_probs=38.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCc-chHHHHHHHHH------HHHHcCCHHHHHHHHHHHH
Q psy17788 227 CATLLLRLGQKDTARHILQRGLNNLPPA-VHVTLITRFAL------AENKFGDASRAQALLEHTL 284 (365)
Q Consensus 227 ~a~~~~~~g~~~~A~~~l~ral~~~p~~-~~~~~~~~~a~------~~~~~g~~e~A~~~fe~~l 284 (365)
.+..++..|++=+|..+|+.+-...+.. ..-.+|..+++ ...+.|+..-|+.+|.+++
T Consensus 38 ~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 38 HGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3444555699999999999988776543 11223333333 4456799999999998885
No 274
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=53.55 E-value=19 Score=20.20 Aligned_cols=23 Identities=22% Similarity=0.512 Sum_probs=18.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q psy17788 332 MKWLKLEEQYGDAEAVENVKKEI 354 (365)
Q Consensus 332 ~~~l~~e~~~G~~~~a~~v~~kA 354 (365)
..|+++++..|..+.|+.+-+++
T Consensus 6 aQW~eYYrsiG~~~eAeaIe~q~ 28 (33)
T 2bn5_A 6 AQWAEYYRSVGKIEEAEAIEKTL 28 (33)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHH
Confidence 46888899999999998886554
No 275
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=49.59 E-value=22 Score=25.62 Aligned_cols=32 Identities=9% Similarity=0.078 Sum_probs=22.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q psy17788 262 RFALAENKFGDASRAQALLEHTLTSYPARVDV 293 (365)
Q Consensus 262 ~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~ 293 (365)
..|..+...|+++.|...|-+|+..+|.-.++
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~L 56 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 56 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 44666777788888888888888777654333
No 276
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=47.76 E-value=42 Score=23.36 Aligned_cols=20 Identities=5% Similarity=0.019 Sum_probs=13.2
Q ss_pred HHhCCHHHHHHHHHHHHHHh
Q psy17788 195 AASAQIRDLESTVKLLLKKA 214 (365)
Q Consensus 195 ~~~g~~~~A~~~~~~al~~~ 214 (365)
-+.|++++|..+|..++..+
T Consensus 30 D~~g~y~eAl~lY~~aie~l 49 (83)
T 2w2u_A 30 DKEGNAEEAITNYKKAIEVL 49 (83)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHH
Confidence 46677777777776666553
No 277
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=47.37 E-value=39 Score=24.29 Aligned_cols=28 Identities=18% Similarity=0.145 Sum_probs=16.4
Q ss_pred HHHHHHHHcccCHHHHHHHHHHHHhhcc
Q psy17788 116 VKYMAYHLQATEIEKARSIARRALTVIN 143 (365)
Q Consensus 116 ~~~~~~~~~~~~~e~A~~~~~raL~~~p 143 (365)
+..|..++..|+++.|...|-+|+...|
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~ 51 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCG 51 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 4455555666666666665666665444
No 278
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=46.77 E-value=44 Score=23.21 Aligned_cols=20 Identities=10% Similarity=0.091 Sum_probs=13.3
Q ss_pred HHhCCHHHHHHHHHHHHHHh
Q psy17788 195 AASAQIRDLESTVKLLLKKA 214 (365)
Q Consensus 195 ~~~g~~~~A~~~~~~al~~~ 214 (365)
-+.|++++|..+|..++..+
T Consensus 22 D~~g~y~eAl~lY~~aie~l 41 (83)
T 2v6y_A 22 DKEGKVEDAITYYKKAIEVL 41 (83)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHH
Confidence 46677777777776666554
No 279
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=46.08 E-value=0.048 Score=52.10 Aligned_cols=221 Identities=13% Similarity=0.080 Sum_probs=114.9
Q ss_pred CCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHH
Q psy17788 109 PNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYM 188 (365)
Q Consensus 109 p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~~ 188 (365)
-+.+.+|.+++...++.+.+.+|+..|-+|=. | ..+...+....+.|.++..+..+.-|-+....+.+=.
T Consensus 51 ~n~p~VWs~LgkAqL~~~~v~eAIdsyIkA~D--p--------s~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDt 120 (624)
T 3lvg_A 51 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKADD--P--------SSYMEVVQAANTSGNWEELVKYLQMARKKARESYVET 120 (624)
T ss_dssp CCCCCCSSSHHHHTTTSSSCTTTTTSSCCCSC--C--------CSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTH
T ss_pred hCCccHHHHHHHHHHccCchHHHHHHHHhCCC--h--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHH
Confidence 45678899999888888888888776644322 2 1122223333344444444444443333222222223
Q ss_pred HHHHHHHHh----------------------------CCHHHHHHHHHHH-------------------HHHhcCCCCcH
Q psy17788 189 NMMEIYAAS----------------------------AQIRDLESTVKLL-------------------LKKAGQTHSSV 221 (365)
Q Consensus 189 ~l~~~~~~~----------------------------g~~~~A~~~~~~a-------------------l~~~~~~~~~~ 221 (365)
.|+-.|.+. |.++.|.-+|..+ +... .-.+++
T Consensus 121 eLi~ayAk~~rL~elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaA-rKAns~ 199 (624)
T 3lvg_A 121 ELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGA-RKANST 199 (624)
T ss_dssp HHHHHHHTSCSSSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTT-TTCCSS
T ss_pred HHHHHHHhhCcHHHHHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHH-HhcCCh
Confidence 333444444 4444433333211 0000 013445
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q psy17788 222 NIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDML 301 (365)
Q Consensus 222 ~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~ 301 (365)
++|-.....+...+.+.-|..+--..+ ..|.. + -.+...|...|-+++-+.++|.++.......-++..++-+|
T Consensus 200 ktWKeV~~ACvd~~EfrLAqicGLniI-vhade--L---~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILY 273 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQMCGLHIV-VHADE--L---EELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILY 273 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTTHHHHHHH-CCSSC--C---SGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCchHHHHHHHhcchhc-ccHHH--H---HHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 555555555555555544433222221 12221 0 11133445678888889999999877777778888888888
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCC------cHHHHHHHHHHHHhcCCHHHHH
Q psy17788 302 VKSDRVDLGRQVIQRAVTQKLPPKK------LKPLYMKWLKLEEQYGDAEAVE 348 (365)
Q Consensus 302 ~~~g~~~~Ar~~~eral~~~l~~~~------~~~~~~~~l~~e~~~G~~~~a~ 348 (365)
.|. .+++..+.++--.+ ++..++ ..-+|...+-++.++.+++.|.
T Consensus 274 sKY-~PeKlmEHlklf~s-riNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 274 SKF-KPQKMREHLELFWS-RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HSS-CTTHHHHHHTTSSS-SSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred Hhc-CHHHHHHHHHHHHH-hccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 776 34444443332111 111111 2346888888888888888664
No 280
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=45.54 E-value=2.4e+02 Score=29.26 Aligned_cols=108 Identities=12% Similarity=-0.088 Sum_probs=61.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------
Q psy17788 227 CATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSY------------------- 287 (365)
Q Consensus 227 ~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~------------------- 287 (365)
++..+...|.++-|+. .+...|..+... +-.|.++...|++++|...|+++-...
T Consensus 816 l~~~L~~~~~~~~a~e----L~~~~~~t~~~~--yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQ----LIGWLNSDPIAV--YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHH----HGGGCCSSHHHH--HHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHH----HHhhcCCChHHH--HHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 4455556666665443 233455543322 234777777777777777776553211
Q ss_pred --CCC--hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCC---cHHHHHHHHHHHHhc
Q psy17788 288 --PAR--VDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKK---LKPLYMKWLKLEEQY 341 (365)
Q Consensus 288 --P~~--~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~---~~~~~~~~l~~e~~~ 341 (365)
++. ...|.-.+.+....|-++.+..+-+.|+. .+.+.. ...+|.+........
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~-~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADA-SKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hcccCCccchHHHHHHHHHHHhhC
Confidence 010 11345556778888999999999999997 333221 124777766554433
No 281
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=44.21 E-value=1.1e+02 Score=23.86 Aligned_cols=80 Identities=8% Similarity=-0.038 Sum_probs=52.7
Q ss_pred CChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHH
Q psy17788 235 GQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVI 314 (365)
Q Consensus 235 g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~ 314 (365)
|+......+|-++ ...+.++.+- ....-..|..+.--.++..++...|-++.+...++..|.+.|+..++..++
T Consensus 75 ~NlKrVi~C~~~~---n~~se~vd~A---Ld~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl 148 (172)
T 1wy6_A 75 QNLKSVVECGVIN---NTLNEHVNKA---LDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLL 148 (172)
T ss_dssp SCTHHHHHHHHHT---TCCCHHHHHH---HHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcHHHHHHHHHHh---cchHHHHHHH---HHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHH
Confidence 4555555555442 2233233322 234456778888778887777777777888888888888888888888888
Q ss_pred HHHHhC
Q psy17788 315 QRAVTQ 320 (365)
Q Consensus 315 eral~~ 320 (365)
.+|+..
T Consensus 149 ~~AC~k 154 (172)
T 1wy6_A 149 IEACKK 154 (172)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 888873
No 282
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=43.63 E-value=3e+02 Score=28.59 Aligned_cols=21 Identities=10% Similarity=0.207 Sum_probs=10.0
Q ss_pred HHHHHhCCHHHHHHHHHHHHH
Q psy17788 192 EIYAASAQIRDLESTVKLLLK 212 (365)
Q Consensus 192 ~~~~~~g~~~~A~~~~~~al~ 212 (365)
-.|.-+|+......++..+..
T Consensus 568 lAyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 568 LAYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp HHTTTSCCHHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHhcc
Confidence 334455555444445555443
No 283
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=40.74 E-value=1.5e+02 Score=24.14 Aligned_cols=117 Identities=9% Similarity=-0.046 Sum_probs=69.5
Q ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHH
Q psy17788 163 LYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARH 242 (365)
Q Consensus 163 ~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 242 (365)
++.+++.+.-+-.-.+..+|...+.. .-.+.-.|.+.++.-++. . -+.....+--+.++...+++..|..
T Consensus 14 kY~dYdt~~fLsa~L~~~~~eY~lL~--~I~LyyngEY~R~Lf~L~----~----lNT~Ts~YYk~LCy~klKdYkkA~~ 83 (242)
T 3kae_A 14 RYRDYETAIFLAACLLPCKPEYRMLM--SIVLYLNGEYTRALFHLH----K----LNTCTSKYYESLCYKKKKDYKKAIK 83 (242)
T ss_dssp HTTCHHHHHHHHHHHC----CTHHHH--HHHHHHTTCHHHHHHHHH----T----CCBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccccHHHHHHHHHccCChHHHhhh--hhhhhhcchHhHHHHHHH----h----cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566665433322223333333322 233345677777655442 1 2334444445567778889999998
Q ss_pred HHHHHHhc----C-------------CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy17788 243 ILQRGLNN----L-------------PPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPAR 290 (365)
Q Consensus 243 ~l~ral~~----~-------------p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~ 290 (365)
.++..+.. + |.+ ..-++.-+|.++...|+.++|+..|......+|--
T Consensus 84 ~le~il~~kvd~d~~~d~~~~~ffvd~~D-kEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf 147 (242)
T 3kae_A 84 SLESILEGKVERDPDVDARIQEMFVDPGD-EEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLF 147 (242)
T ss_dssp HHHHHHTTCSBCCCCCCHHHHTTSCCTTC-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHhcccccCcccccccceeeeccch-HHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCcccc
Confidence 88888832 1 222 23466777889999999999999998887776643
No 284
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=40.71 E-value=49 Score=22.99 Aligned_cols=32 Identities=9% Similarity=0.053 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy17788 200 IRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLN 249 (365)
Q Consensus 200 ~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~ 249 (365)
.+.|+++..+++... +.|++++|..+|..+++
T Consensus 16 ~~~Ai~lv~~Ave~D------------------~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 16 EEMARKYAINAVKAD------------------KEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHHHHHH------------------HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH------------------HhccHHHHHHHHHHHHH
Confidence 355666666666543 45777777777776654
No 285
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=39.32 E-value=53 Score=22.77 Aligned_cols=31 Identities=13% Similarity=0.170 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy17788 201 RDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLN 249 (365)
Q Consensus 201 ~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~ 249 (365)
+.|+.+..+|+... +.|++++|..+|..+++
T Consensus 9 ~~Ai~lv~~Ave~D------------------~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 9 DMARKYAILAVKAD------------------KEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHHHHHHHH------------------HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------------------HhccHHHHHHHHHHHHH
Confidence 45666666666543 45677777777766654
No 286
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=37.89 E-value=2e+02 Score=29.72 Aligned_cols=79 Identities=8% Similarity=-0.054 Sum_probs=53.3
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHc---------------------CC---CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy17788 155 TSLLNLEHLYGTKESLQECLHEAVRC---------------------ND---ETKVYMNMMEIYAASAQIRDLESTVKLL 210 (365)
Q Consensus 155 ~~~~~l~~~~g~~~~a~~v~~ral~~---------------------~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~a 210 (365)
+-.+.++...|++++|..+|++|-.- .. ...-|.+++.++.+.+-++-+.++-+.|
T Consensus 844 yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lA 923 (950)
T 4gq2_M 844 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA 923 (950)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 44666666667777777777665210 00 1235688899999999999999999999
Q ss_pred HHHhcCCCCcH----HHHHHHHHHHHHcC
Q psy17788 211 LKKAGQTHSSV----NIYLQCATLLLRLG 235 (365)
Q Consensus 211 l~~~~~~~~~~----~~~~~~a~~~~~~g 235 (365)
+.... ++++ .+|..+-......|
T Consensus 924 I~~~~--~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 924 DASKE--TDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHTCC--SCCHHHHHHHHHHHHHHHHHHC
T ss_pred Hhhcc--cCCccchHHHHHHHHHHHhhCC
Confidence 98642 2333 48888777766554
No 287
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=36.68 E-value=1.2e+02 Score=24.92 Aligned_cols=50 Identities=8% Similarity=0.024 Sum_probs=30.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHH
Q psy17788 262 RFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGR 311 (365)
Q Consensus 262 ~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar 311 (365)
+...++.+.|.+++|..+|++....+|.+..+-..+..+-.+...++...
T Consensus 122 qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~H~~l 171 (211)
T 3bqo_A 122 QAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSFF 171 (211)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTTCHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCCcHHH
Confidence 33456778899999999999988888777666666666655554444333
No 288
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.49 E-value=2.6e+02 Score=25.46 Aligned_cols=65 Identities=14% Similarity=-0.053 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc---C---CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17788 221 VNIYLQCATLLLRLGQKDTARHILQRGLNN---L---PPAVHVTLITRFALAENKFGDASRAQALLEHTLT 285 (365)
Q Consensus 221 ~~~~~~~a~~~~~~g~~~~A~~~l~ral~~---~---p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~ 285 (365)
..++...+..+...|+.+.|+.+++++-.. . +...+..++...+..+...+++..+...+-..+.
T Consensus 127 l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 127 LLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 345566666666666666666666665432 1 1122344444455555566666665555544444
No 289
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=35.31 E-value=3.3e+02 Score=26.63 Aligned_cols=191 Identities=9% Similarity=0.011 Sum_probs=100.6
Q ss_pred HHHHHHhc-CCCCCCh-HHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHH----
Q psy17788 84 QAEDELLQ-NGEPVSP-DGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSL---- 157 (365)
Q Consensus 84 ~~e~~l~~-~~~p~a~-~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~---- 157 (365)
.+...-+. ...|.+. ..|.......--+.......+...+..|+...|+.+.... |.. .......|.++
T Consensus 124 ~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l----~~~-~~~~a~~~~al~~~p 198 (618)
T 1qsa_A 124 GAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQM----PAD-YQTIASAIISLANNP 198 (618)
T ss_dssp HHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTC----CGG-GHHHHHHHHHHHHCG
T ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhC----CHH-HHHHHHHHHHHHhCh
Confidence 34444555 4456554 4555555444445544445557777788887777665431 110 00000111111
Q ss_pred ----------------------HHHHHHhCCHHHHHHHHHHHHHcCC-CHHH----HHHHHHHHHHhCCHHHHHHHHHHH
Q psy17788 158 ----------------------LNLEHLYGTKESLQECLHEAVRCND-ETKV----YMNMMEIYAASAQIRDLESTVKLL 210 (365)
Q Consensus 158 ----------------------~~l~~~~g~~~~a~~v~~ral~~~~-~~~~----~~~l~~~~~~~g~~~~A~~~~~~a 210 (365)
+--.....+.+.|...|........ +... +..++.-....+...++...+.+.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~ 278 (618)
T 1qsa_A 199 NTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDA 278 (618)
T ss_dssp GGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHH
T ss_pred HhHHHHHhccCCChhhHHHHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhc
Confidence 1011122255666666666543221 2221 122222222334355666666665
Q ss_pred HHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17788 211 LKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLT 285 (365)
Q Consensus 211 l~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~ 285 (365)
... ..+..+..-.+...++.|++..|...|.++-...........|. |..+...|+.++|..+|+.+..
T Consensus 279 ~~~----~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~--~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 279 IMR----SQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQ--ADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHT----CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHH--HHHHHHTTCHHHHHHHHHHHHT
T ss_pred ccc----CCChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHH--HHHHHHcCCHHHHHHHHHHHhc
Confidence 443 34444444455566788999999998877543222222233444 8888899999999999998875
No 290
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.64 E-value=2.6e+02 Score=25.37 Aligned_cols=83 Identities=11% Similarity=-0.046 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------C--------CcchHHHHHHHHHHH
Q psy17788 203 LESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNL-------P--------PAVHVTLITRFALAE 267 (365)
Q Consensus 203 A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~-------p--------~~~~~~~~~~~a~~~ 267 (365)
..++|+..+..|...-+....-.-+........+.++|...++...... + ....+.+....+.++
T Consensus 58 ~~~ly~~fi~~f~~kin~L~lv~~~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~y 137 (393)
T 4b4t_O 58 RLRLYDNFVSKFYDKINQLSVVKYLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTY 137 (393)
T ss_dssp CHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHH
Confidence 3456666665551101112222223344556678888888887764432 0 122355566677778
Q ss_pred HHcCCHHHHHHHHHHHHH
Q psy17788 268 NKFGDASRAQALLEHTLT 285 (365)
Q Consensus 268 ~~~g~~e~A~~~fe~~l~ 285 (365)
...|+.+.|+.+.+++-.
T Consensus 138 l~~~d~~~a~~~l~~~~~ 155 (393)
T 4b4t_O 138 LLKNDLVKARDLLDDLEK 155 (393)
T ss_dssp HHHSCHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHH
Confidence 888888888888877743
No 291
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=34.54 E-value=84 Score=22.24 Aligned_cols=20 Identities=5% Similarity=-0.080 Sum_probs=11.7
Q ss_pred HHhCCHHHHHHHHHHHHHHh
Q psy17788 195 AASAQIRDLESTVKLLLKKA 214 (365)
Q Consensus 195 ~~~g~~~~A~~~~~~al~~~ 214 (365)
...|++++|..+|..++..+
T Consensus 26 D~~g~y~eAl~~Y~~Aie~l 45 (93)
T 1wfd_A 26 DAESRYQQALVCYQEGIDML 45 (93)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHH
Confidence 34566666666666665543
No 292
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=33.86 E-value=1e+02 Score=21.67 Aligned_cols=31 Identities=13% Similarity=0.164 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q psy17788 200 IRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLR 233 (365)
Q Consensus 200 ~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~ 233 (365)
++.|+...+++-.+| .+++.+|..+..++..
T Consensus 10 ~~~A~~YvnkVK~rF---~~~p~~Y~~FL~IL~~ 40 (89)
T 1g1e_B 10 FNHAINYVNKIKNRF---QGQPDIYKAFLEILHT 40 (89)
T ss_dssp HHHHHHHHHHHHHHT---TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---ccChHHHHHHHHHHHH
Confidence 345555555555555 4555555555555443
No 293
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=33.66 E-value=81 Score=25.94 Aligned_cols=52 Identities=6% Similarity=-0.014 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcch---HHHHHHHHHHHHHcCCH
Q psy17788 222 NIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVH---VTLITRFALAENKFGDA 273 (365)
Q Consensus 222 ~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~---~~~~~~~a~~~~~~g~~ 273 (365)
...+.+|.+++..+++.+|...|..|+...|.... ..++.-+.-+..-.|+.
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~i 69 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHM 69 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCC
Confidence 34556677777788888888888888877665321 22333333344455663
No 294
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=30.64 E-value=98 Score=23.03 Aligned_cols=20 Identities=0% Similarity=-0.079 Sum_probs=12.5
Q ss_pred HHhCCHHHHHHHHHHHHHHh
Q psy17788 195 AASAQIRDLESTVKLLLKKA 214 (365)
Q Consensus 195 ~~~g~~~~A~~~~~~al~~~ 214 (365)
-..|++++|+.+|..++..+
T Consensus 29 D~ag~y~eAl~lY~~Aie~l 48 (117)
T 2cpt_A 29 DKAGNYEEALQLYQHAVQYF 48 (117)
T ss_dssp HHHTCHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHH
Confidence 34566777777766666543
No 295
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=30.51 E-value=3e+02 Score=24.65 Aligned_cols=204 Identities=11% Similarity=0.003 Sum_probs=0.0
Q ss_pred HHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHH
Q psy17788 122 HLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIR 201 (365)
Q Consensus 122 ~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~ 201 (365)
+-..+.+++.+.=++..+..-.+.+..+-......+.+-+.+.++++.|++++... +..+.+.|...
T Consensus 6 ~~~~~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~G-------------A~~ll~~~Q~~ 72 (336)
T 3lpz_A 6 HHHSNKIERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASV-------------SQTLLRSGQGG 72 (336)
T ss_dssp ----CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------HHHHHHTTCHH
T ss_pred cchhhHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHH-------------HHHHHHCCCcc
Q ss_pred HHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHHcCChHHHH-HHHHHHHhc-----CCCcchHHHHHHHHHHHHHcCCH
Q psy17788 202 DLESTVKLLLKKA--GQTHSSVNIYLQCATLLLRLGQKDTAR-HILQRGLNN-----LPPAVHVTLITRFALAENKFGDA 273 (365)
Q Consensus 202 ~A~~~~~~al~~~--~~~~~~~~~~~~~a~~~~~~g~~~~A~-~~l~ral~~-----~p~~~~~~~~~~~a~~~~~~g~~ 273 (365)
.|.++.-.++..+ ...+.+....-.++.++......+-.+ .++++|+.- ....-+..+...+|..+.+.|++
T Consensus 73 sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~ 152 (336)
T 3lpz_A 73 SGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEF 152 (336)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCH
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhc
Q psy17788 274 SRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQY 341 (365)
Q Consensus 274 e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~ 341 (365)
.+|+..| ++..++.-..+-..+.+.+...+ ..++--+.-|++-.-|-..+.......+-.|....
T Consensus 153 ~~Ae~H~--ilg~~~s~~~~a~mL~ew~~~~~-~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l 217 (336)
T 3lpz_A 153 EAAEKHL--VLGTKESPEVLARMEYEWYKQDE-SHTAPLYCARAVLPYLLVANVRAANTAYRIFTSAL 217 (336)
T ss_dssp HHHHHHH--TTSCTTHHHHHHHHHHHHHHTSC-GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HhcCCchHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
No 296
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=29.83 E-value=2.9e+02 Score=24.36 Aligned_cols=28 Identities=11% Similarity=-0.062 Sum_probs=19.1
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHH
Q psy17788 218 HSSVNIYLQCATLLLRLGQKDTARHILQ 245 (365)
Q Consensus 218 ~~~~~~~~~~a~~~~~~g~~~~A~~~l~ 245 (365)
..++.++..+|..+...|++.+|+..|-
T Consensus 131 ~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 131 FGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 3567777777777777777777766553
No 297
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=28.33 E-value=2.1e+02 Score=24.09 Aligned_cols=27 Identities=15% Similarity=0.084 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17788 257 VTLITRFALAENKFGDASRAQALLEHT 283 (365)
Q Consensus 257 ~~~~~~~a~~~~~~g~~e~A~~~fe~~ 283 (365)
..-......++.++|..++|+.+|-++
T Consensus 91 ~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 91 IVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 334455567777888888888877544
No 298
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=27.60 E-value=4.1e+02 Score=26.26 Aligned_cols=176 Identities=11% Similarity=0.014 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcccCHHH-----HHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHH
Q psy17788 113 ELWVKYMAYHLQATEIEK-----ARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVY 187 (365)
Q Consensus 113 ~~w~~~~~~~~~~~~~e~-----A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~ 187 (365)
.+|+++.........-+. ...-+++.+..+.. .+.+. .|..+....|.++.|+..+-+. ++...+|
T Consensus 257 ~LWl~L~lvre~~~~~~~~~e~ytL~~LQ~~I~~yGe----~~F~~--lYf~vLlLtgqFE~AI~~L~~~---~~vdAVH 327 (661)
T 2qx5_A 257 WLWMHLMLIKEKDAENDPVYERYSLEDFQNIIISYGP----SRFSN--YYLQTLLLSGLYGLAIDYTYTF---SEMDAVH 327 (661)
T ss_dssp HHHHHHHTCCC----------CCCHHHHHHHHHHHCG----GGGTT--CHHHHHHHTTCHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhccCCCcccccccccccHHHHHHHHHHhhh----hhhhh--HHHHHHHHHhhHHHHHHHHHhc---CchhHHH
Q ss_pred HHHHHHH--------------------------------HHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcC
Q psy17788 188 MNMMEIY--------------------------------AASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLG 235 (365)
Q Consensus 188 ~~l~~~~--------------------------------~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g 235 (365)
+.++-.+ .+..+...|.+.|--+ ....+.......+..+.++....+
T Consensus 328 ~AIaL~~~gLL~~~~~lls~~~~~~~lN~arLI~~Yt~~F~~td~~~Al~Y~~li-~l~~g~~~~~~~~~~l~eLvletr 406 (661)
T 2qx5_A 328 LAIGLASLKLFKIDSSTRLTKKPKRDIRFANILANYTKSFRYSDPRVAVEYLVLI-TLNEGPTDVELCHEALRELVLETK 406 (661)
T ss_dssp HHHHHHHTTC-----------------CHHHHHHHHHTTTTTTCHHHHHHHHHGG-GGSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCccCCCcccccCCCcccccHHHHHHHHHHHhhcCCHHHHHHHHHHH-hccCCchHHHHHHHHHHHHHHhcc
Q ss_pred ChHHHH-----------HHHHHHHhcCCCcc----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q psy17788 236 QKDTAR-----------HILQRGLNNLPPAV----HVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDM 300 (365)
Q Consensus 236 ~~~~A~-----------~~l~ral~~~p~~~----~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~ 300 (365)
+++.-. .++++-.....-.. .-.+....|.-....|.++.|..+|.-+
T Consensus 407 ~f~~LLG~i~~dG~r~~G~i~~~~~li~l~d~~~~~~~i~~~aA~~ae~~G~~~dAi~LY~La----------------- 469 (661)
T 2qx5_A 407 EFTVLLGKIGRDGARIPGVIEERQPLLHVRDEKEFLHTITEQAARRADEDGRIYDSILLYQLA----------------- 469 (661)
T ss_dssp CHHHHHCEECTTSCEECCHHHHTCGGGTCSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT-----------------
T ss_pred cHHHHcCCcCCCCCcCcchHHHhhcccccccHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHh-----------------
Q ss_pred HHhcCChHHHHHHHHHHHh
Q psy17788 301 LVKSDRVDLGRQVIQRAVT 319 (365)
Q Consensus 301 ~~~~g~~~~Ar~~~eral~ 319 (365)
|+++.|..+..+++.
T Consensus 470 ----~~~d~vl~lln~~Ls 484 (661)
T 2qx5_A 470 ----EEYDIVITLVNSLLS 484 (661)
T ss_dssp ----TCHHHHHHHHHHHHH
T ss_pred ----cCHHHHHHHHHHHHH
No 299
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=27.40 E-value=1.4e+02 Score=19.97 Aligned_cols=41 Identities=12% Similarity=0.182 Sum_probs=28.2
Q ss_pred HHHHHHHHHhCCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788 277 QALLEHTLTSYPAR-VDVWGVYVDMLVKSDRVDLGRQVIQRAVT 319 (365)
Q Consensus 277 ~~~fe~~l~~~P~~-~~~w~~~~~~~~~~g~~~~Ar~~~eral~ 319 (365)
..+|++++..+|.. ++-|...+.+. .....+++.-|+....
T Consensus 16 ~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 16 LSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLKD 57 (72)
T ss_dssp HHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 46788888888865 46787777774 2456677777776655
No 300
>1xkp_A Putative membrane-bound YOP targeting protein YOP; YOPN, type III secretion, SYCN, membrane PR chaperon complex; HET: MLY; 1.70A {Yersinia pestis} SCOP: a.243.1.3 PDB: 1xl3_A*
Probab=26.10 E-value=3e+02 Score=23.34 Aligned_cols=49 Identities=16% Similarity=0.137 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy17788 198 AQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNN 250 (365)
Q Consensus 198 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~ 250 (365)
+.....+.+|...+..+ ..-..+|-.+..-| ...++..+...+.+||..
T Consensus 162 ~s~~~LR~lYr~~v~~~---~s~~~~~~~~~~~y-g~~~~~~vl~fL~~AL~~ 210 (246)
T 1xkp_A 162 NPLQPLRDTYRDAVMGY---QGIYAIWSDLQXRF-PNGDIDSVILFLQXALSA 210 (246)
T ss_dssp CCHHHHHHHHHHHHHCC---CCHHHHHHHHHHHC-TTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcc---ccHHHHHHHHHHHh-CchHHHHHHHHHHHHHHH
Confidence 45566666776666543 22223333322222 233567777777777765
No 301
>2vj4_A Protein MXIC, MXIC; secretion regulation, transport protein, T3SS, virulence, TR type three secretion system; HET: MLY; 2.50A {Shigella flexneri} PDB: 2vix_A* 2vj5_A
Probab=25.36 E-value=3.1e+02 Score=23.96 Aligned_cols=152 Identities=6% Similarity=-0.036 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHc--------CCHHHH
Q psy17788 205 STVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKF--------GDASRA 276 (365)
Q Consensus 205 ~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~--------g~~e~A 276 (365)
++...+...| |+....|..+..++.+..-...-+..++.++..+-.. +-..+..=+++-... +.+..-
T Consensus 45 ~ll~~l~~~F---~D~Sd~~~AL~~Ll~r~~l~~~~~~~l~~al~~le~~-~~~~i~aGiNial~Ar~F~~~~~~s~~~L 120 (294)
T 2vj4_A 45 DFIDRLXRYF---XDPSDQVLALRELLNEXDLTAEQVELLTXIINEIISG-SEXSVNAGINSAIQAXLFGNXMXLEPQLL 120 (294)
T ss_dssp TTHHHHHHHC---CSHHHHHHHHHHHTTCSCCCSSHHHHHHHHHHHHHTT-CHHHHHHHHHTHHHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHc---CCHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhc-cchhhhhcchHHHHHhhhhhhhcCCHHHH
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy17788 277 QALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQ 356 (365)
Q Consensus 277 ~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~ 356 (365)
|.+|...+..+-.-..+|..++.-| ..++...+..+..+++...+.......--..+..+-...++......+...-.+
T Consensus 121 R~~YR~fv~~~~~~~~ly~~w~~~y-g~~~r~~v~~Fl~~aL~aDL~s~~psi~~~efg~l~s~l~~Lr~L~S~d~~F~~ 199 (294)
T 2vj4_A 121 RACYRGFIMGNISTTDQYIEWLGNF-GFNHRHTIVNFVEQSLIVDMDSEXPSCNAYEFGFVLSXLIAIXMIRTSDVIFMX 199 (294)
T ss_dssp HHHHHHHHHCCCCHHHHHHHHHHHH-CSTTHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHh-CcchHHHHHHHHHHHHhhhhhccCCCCCHHHHHHHHHHHHHHHHHHhHHHHHHH
Q ss_pred HHHhh
Q psy17788 357 YVRNS 361 (365)
Q Consensus 357 ~v~~~ 361 (365)
.+.+.
T Consensus 200 ~~~~~ 204 (294)
T 2vj4_A 200 XLESS 204 (294)
T ss_dssp HHHHH
T ss_pred HHHhh
No 302
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=24.38 E-value=1.2e+02 Score=21.68 Aligned_cols=27 Identities=7% Similarity=-0.068 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy17788 186 VYMNMMEIYAASAQIRDLESTVKLLLK 212 (365)
Q Consensus 186 ~~~~l~~~~~~~g~~~~A~~~~~~al~ 212 (365)
.+...++.+.+.|+|++|++...++..
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 445667788889999999888877764
No 303
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=24.16 E-value=6.2e+02 Score=26.27 Aligned_cols=44 Identities=16% Similarity=0.027 Sum_probs=29.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCC
Q psy17788 261 TRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDR 306 (365)
Q Consensus 261 ~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~ 306 (365)
....++..++++.+.+..+|.+++. .++..+-..++-.+...+.
T Consensus 234 ~~a~~~ai~LnD~~li~~if~~l~~--~~d~l~ayQiAFdL~~~~~ 277 (963)
T 4ady_A 234 LTLNKVVVNLNDAGLALQLFKKLKE--ENDEGLSAQIAFDLVSSAS 277 (963)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh--cccHHHHHHHHHHHhcccc
Confidence 3446777889999999999999984 4444444445544544443
No 304
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=22.04 E-value=75 Score=21.84 Aligned_cols=25 Identities=16% Similarity=0.195 Sum_probs=17.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17788 261 TRFALAENKFGDASRAQALLEHTLT 285 (365)
Q Consensus 261 ~~~a~~~~~~g~~e~A~~~fe~~l~ 285 (365)
.+.|+=+.-.|+++.|..+|+.++.
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHH
Confidence 3446666677888888888877764
No 305
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=21.64 E-value=2.8e+02 Score=25.35 Aligned_cols=65 Identities=9% Similarity=-0.100 Sum_probs=33.8
Q ss_pred CcHHHHHHHHHHHHHcCCh--HHHHHHHHHHHhcC---CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17788 219 SSVNIYLQCATLLLRLGQK--DTARHILQRGLNNL---PPAVHVTLITRFALAENKFGDASRAQALLEHT 283 (365)
Q Consensus 219 ~~~~~~~~~a~~~~~~g~~--~~A~~~l~ral~~~---p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~ 283 (365)
..|.+.-++|++..-.--. ..+..+|.+|+.+. =.+.|+.-+...|-++++++++.+|...+-.+
T Consensus 253 rYPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~A 322 (472)
T 3re2_A 253 TYPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDA 322 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hCchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHH
Confidence 3455555555555443211 22556666665542 12234555555566666666666666665544
No 306
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=20.15 E-value=94 Score=21.65 Aligned_cols=17 Identities=6% Similarity=0.030 Sum_probs=10.2
Q ss_pred HHcCCHHHHHHHHHHHH
Q psy17788 268 NKFGDASRAQALLEHTL 284 (365)
Q Consensus 268 ~~~g~~e~A~~~fe~~l 284 (365)
-..|++++|..+|..++
T Consensus 27 D~~g~y~eAl~lY~~Ai 43 (86)
T 4a5x_A 27 DSESRYPQALVCYQEGI 43 (86)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 45566666666666555
Done!