Your job contains 1 sequence.
>psy17788
MDVEEQQSEELLAKSTTQSNSIPDSLPQVGFTWGMAMEDLNLLKPNQDDSEDEEEEVEIK
KVKPKLTKAEKLAAAKAEEARIRQAEDELLQNGEPVSPDGFDRMLLGQPNNSELWVKYMA
YHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRC
NDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTA
RHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDM
LVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRN
SKNKW
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy17788
(365 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|F1P3T9 - symbol:PDCD11 "Uncharacterized protein... 558 1.8e-52 1
UNIPROTKB|F1S842 - symbol:LOC100157027 "Uncharacterized p... 554 4.8e-52 1
UNIPROTKB|F1S843 - symbol:LOC100157027 "Uncharacterized p... 553 6.3e-52 1
UNIPROTKB|F1PLK8 - symbol:PDCD11 "Uncharacterized protein... 548 2.1e-51 1
UNIPROTKB|Q14690 - symbol:PDCD11 "Protein RRP5 homolog" s... 548 2.1e-51 1
UNIPROTKB|A7MB10 - symbol:PDCD11 "Protein RRP5 homolog" s... 541 1.2e-50 1
UNIPROTKB|G5E5C4 - symbol:PDCD11 "Protein RRP5 homolog" s... 541 1.2e-50 1
RGD|1304933 - symbol:Pdcd11 "programmed cell death 11" sp... 537 3.2e-50 1
MGI|MGI:1341788 - symbol:Pdcd11 "programmed cell death 11... 536 4.0e-50 1
ZFIN|ZDB-GENE-030131-4076 - symbol:pdcd11 "programmed cel... 520 1.9e-48 1
POMBASE|SPCC1183.07 - symbol:SPCC1183.07 "U3 snoRNP-assoc... 470 1.5e-44 2
FB|FBgn0039182 - symbol:CG5728 species:7227 "Drosophila m... 467 5.7e-43 1
SGD|S000004842 - symbol:RRP5 "RNA binding protein involve... 424 3.0e-38 1
TAIR|locus:2088644 - symbol:RRP5 "Ribosomal RNA Processin... 415 3.1e-37 1
CGD|CAL0005606 - symbol:orf19.1578 species:5476 "Candida ... 404 4.0e-36 1
ASPGD|ASPL0000042752 - symbol:rrp5 species:162425 "Emeric... 402 6.9e-36 1
DICTYBASE|DDB_G0290181 - symbol:DDB_G0290181 "RNA binding... 380 4.7e-34 1
WB|WBGene00002850 - symbol:let-716 species:6239 "Caenorha... 332 1.9e-28 1
ASPGD|ASPL0000053069 - symbol:AN1259 species:162425 "Emer... 119 0.00045 1
TAIR|locus:2161363 - symbol:AT5G45990 species:3702 "Arabi... 108 0.00096 2
>UNIPROTKB|F1P3T9 [details] [associations]
symbol:PDCD11 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0008134 "transcription
factor binding" evidence=IEA] InterPro:IPR003029 InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126 PROSITE:PS50293
SMART:SM00386 GO:GO:0005829 GO:GO:0005634 GO:GO:0006397
GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
OMA:LHLADIY GeneTree:ENSGT00390000012228 EMBL:AADN02030831
IPI:IPI00603042 Ensembl:ENSGALT00000013446 Uniprot:F1P3T9
Length = 1841
Score = 558 (201.5 bits), Expect = 1.8e-52, P = 1.8e-52
Identities = 128/360 (35%), Positives = 193/360 (53%)
Query: 5 EQQSEELLAKSTTQS-NSIPDSLPQVGFTWGMAMEDLNLLK-P--NQXXXXXXXXXXXIK 60
+Q+ E KS + +P GFTW ED+N L+ P NQ
Sbjct: 1479 DQEEEAAKKKSKIRKCGEVPRLQVSAGFTWD---EDMNALEVPVLNQKEESSESEEEEEN 1535
Query: 61 -KVKPKLTXXXXXXXXXXXXXRIRQAEDELLQ-NGEPVSPDGFDRMLLGQPNNSELWVKY 118
+ K K T + + E L+ + +P S D FDR++L PN+S LW++Y
Sbjct: 1536 LQSKKKQTKKEKELEKQKKEKELCKLEAALMDPSRQPQSADDFDRLVLSSPNSSILWLQY 1595
Query: 119 MAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAV 178
MA+HLQATEIEKAR++A RAL I R E+++LNVW +LLNLE++YGT+E+L + AV
Sbjct: 1596 MAFHLQATEIEKARAVAERALKTICFREEQEKLNVWVALLNLENMYGTEETLMKVFERAV 1655
Query: 179 RCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKD 238
+ N+ KV+ ++ +IYA+S + + E +L++ Q S ++L+ A+ LL+ GQ +
Sbjct: 1656 QYNEPLKVFQHLCDIYASSEKYKQAEELYHTMLRRFRQEKS---VWLKYASFLLKQGQTE 1712
Query: 239 TARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYV 298
+L+R L LP HV +I+RFA E +FGD A+AL E TL SYP R D+W +Y+
Sbjct: 1713 ATHRLLERALKALPTKEHVDVISRFAQLEFRFGDPEHAKALFESTLNSYPKRTDIWSIYM 1772
Query: 299 DMLVKSDRVDLGRQVIQRAVTQXXXXXXXXXXXXXXXXXEEQYGDAEAVENVKKEIEQYV 358
D+++K R + +R + E++YG E V VK +YV
Sbjct: 1773 DIMIKQGSQKEIRDIFERVIHLNLAPKKMKFFFKRYLDYEKKYGTTETVMAVKTAALEYV 1832
>UNIPROTKB|F1S842 [details] [associations]
symbol:LOC100157027 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 PROSITE:PS50293 SMART:SM00386 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
GeneTree:ENSGT00390000012228 Ensembl:ENSSSCT00000011594
ArrayExpress:F1S842 Uniprot:F1S842
Length = 1859
Score = 554 (200.1 bits), Expect = 4.8e-52, P = 4.8e-52
Identities = 114/330 (34%), Positives = 183/330 (55%)
Query: 30 GFTWGMAMEDLNLLKPNQXXXXXXXXXXXIKKVKPKLTXXXXXXXXXXXXXRIRQAEDEL 89
GFTW + ++ L P ++ K + + + E+ L
Sbjct: 1524 GFTWDVGLDSLTPALPPHGESSDSEEDEKPEQATKKKSKKERELEKQKAEKELSRLEEAL 1583
Query: 90 LQNG-EPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEE 148
+ G +P S D FDR++L PN+S LW++YMA+HLQATEIEKAR++A RAL I+ R E+
Sbjct: 1584 MDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQ 1643
Query: 149 DRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVK 208
++LNVW +LLNLE++YG++ESL + AV+ N+ KV++++ +IY S + ++
Sbjct: 1644 EKLNVWVALLNLENMYGSQESLTKVFERAVQYNEPLKVFLHLADIYTKSEKFQEAGELYN 1703
Query: 209 LLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAEN 268
+LK+ Q + ++++ LLR GQ + ++QR L LP HV +I +FA E
Sbjct: 1704 RMLKRFRQEKA---VWIKYGAFLLRRGQAGASHRVMQRALECLPKKEHVDVIAKFAQLEF 1760
Query: 269 KFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQXXXXXXXX 328
+ GDA RA+A+ E+TL++YP R DVW VY+DM++K R + +R +
Sbjct: 1761 QLGDAERAKAIFENTLSTYPKRTDVWSVYIDMIIKHGSQKEVRDIFERVIHLSLAPKRMK 1820
Query: 329 XXXXXXXXXEEQYGDAEAVENVKKEIEQYV 358
E+Q+G + V+ VK + +YV
Sbjct: 1821 FFFKRYLDYEKQHGTEKDVQAVKAKALEYV 1850
>UNIPROTKB|F1S843 [details] [associations]
symbol:LOC100157027 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 PROSITE:PS50293 SMART:SM00386 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
OMA:LHLADIY GeneTree:ENSGT00390000012228 Ensembl:ENSSSCT00000011593
ArrayExpress:F1S843 Uniprot:F1S843
Length = 1876
Score = 553 (199.7 bits), Expect = 6.3e-52, P = 6.3e-52
Identities = 115/331 (34%), Positives = 185/331 (55%)
Query: 30 GFTWGMAMEDLN-LLKPNQXXXXXXXXXXXIKKVKPKLTXXXXXXXXXXXXXRIRQAEDE 88
GFTW + ++ L L P+ + + K + + + E+
Sbjct: 1540 GFTWDVGLDSLTPALPPHGESSDSEEDEKPEQATQKKKSKKERELEKQKAEKELSRLEEA 1599
Query: 89 LLQNG-EPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNE 147
L+ G +P S D FDR++L PN+S LW++YMA+HLQATEIEKAR++A RAL I+ R E
Sbjct: 1600 LMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREE 1659
Query: 148 EDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTV 207
+++LNVW +LLNLE++YG++ESL + AV+ N+ KV++++ +IY S + ++
Sbjct: 1660 QEKLNVWVALLNLENMYGSQESLTKVFERAVQYNEPLKVFLHLADIYTKSEKFQEAGELY 1719
Query: 208 KLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAE 267
+LK+ Q + ++++ LLR GQ + ++QR L LP HV +I +FA E
Sbjct: 1720 NRMLKRFRQEKA---VWIKYGAFLLRRGQAGASHRVMQRALECLPKKEHVDVIAKFAQLE 1776
Query: 268 NKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQXXXXXXX 327
+ GDA RA+A+ E+TL++YP R DVW VY+DM++K R + +R +
Sbjct: 1777 FQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMIIKHGSQKEVRDIFERVIHLSLAPKRM 1836
Query: 328 XXXXXXXXXXEEQYGDAEAVENVKKEIEQYV 358
E+Q+G + V+ VK + +YV
Sbjct: 1837 KFFFKRYLDYEKQHGTEKDVQAVKAKALEYV 1867
>UNIPROTKB|F1PLK8 [details] [associations]
symbol:PDCD11 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR003029 InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126 PROSITE:PS50293
SMART:SM00386 GO:GO:0005634 GO:GO:0006397 GO:GO:0003723
Gene3D:1.25.40.10 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 CTD:22984
KO:K14792 OMA:LHLADIY GeneTree:ENSGT00390000012228
EMBL:AAEX03015497 EMBL:AAEX03015498 RefSeq:XP_535003.3
Ensembl:ENSCAFT00000016578 GeneID:477810 KEGG:cfa:477810
Uniprot:F1PLK8
Length = 1870
Score = 548 (198.0 bits), Expect = 2.1e-51, P = 2.1e-51
Identities = 119/357 (33%), Positives = 192/357 (53%)
Query: 4 EEQQSEELLAKSTTQSNS-IPDSLPQVGFTWGMAMEDLNLLKPNQXXXXXXXXXXXIKKV 62
EE + +L K + + +P GF W + ++ L P + ++
Sbjct: 1508 EEVEEMSVLPKEKPRRPAEVPRLQLSSGFIWDVGLDSLTPALPPRGESSDSEEDNKPQQS 1567
Query: 63 KPKLTXXXXXXXXXXXXXRIRQAEDELLQNG-EPVSPDGFDRMLLGQPNNSELWVKYMAY 121
K + + + E+ L+ G +P S D FDR+LL PN+S LW++YMA+
Sbjct: 1568 TQKKSKKERMLEKQKAEKELSRIEEALMDPGRQPESADDFDRLLLSSPNSSILWLQYMAF 1627
Query: 122 HLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCN 181
HLQATEIEKAR++A RAL I+ R E+++LNVW +LLNLE++YG++ESL + AV+ N
Sbjct: 1628 HLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFERAVQYN 1687
Query: 182 DETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTAR 241
+ KV++++ +IY S + ++ +LK+ Q + ++++ LLR GQ +
Sbjct: 1688 EPLKVFLHLADIYNKSEKFQEAGELYNRMLKRFRQEKA---VWIKYGAFLLRRGQAGASH 1744
Query: 242 HILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDML 301
++QR L LP HV +I +FA E + GDA RA+A+ E+TL++YP R DVW VY+DM
Sbjct: 1745 RVMQRALECLPNKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMT 1804
Query: 302 VKSDRVDLGRQVIQRAVTQXXXXXXXXXXXXXXXXXEEQYGDAEAVENVKKEIEQYV 358
+K R + +R + E+Q+G + V+ VK + +YV
Sbjct: 1805 IKHGSQKEVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYV 1861
>UNIPROTKB|Q14690 [details] [associations]
symbol:PDCD11 "Protein RRP5 homolog" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126
SMART:SM00386 GO:GO:0005829 GO:GO:0005634 GO:GO:0005730
EMBL:CH471066 GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AL591408
GO:GO:0006364 EMBL:AL139339 InterPro:IPR022967 SMART:SM00316
CTD:22984 eggNOG:COG0539 HOGENOM:HOG000088607 HOVERGEN:HBG108419
KO:K14792 EMBL:D80007 EMBL:AL603983 EMBL:BC049838 EMBL:BC064486
EMBL:BC080560 EMBL:BC111040 EMBL:AY007124 IPI:IPI00400922
RefSeq:NP_055791.1 UniGene:Hs.239499 PDB:1WI5 PDBsum:1WI5
ProteinModelPortal:Q14690 SMR:Q14690 IntAct:Q14690
MINT:MINT-1388150 STRING:Q14690 PhosphoSite:Q14690 DMDM:145559523
SWISS-2DPAGE:Q14690 PaxDb:Q14690 PRIDE:Q14690 DNASU:22984
Ensembl:ENST00000369797 GeneID:22984 KEGG:hsa:22984 UCSC:uc001kwy.1
GeneCards:GC10P105156 H-InvDB:HIX0009176 HGNC:HGNC:13408
HPA:CAB026472 HPA:HPA017924 MIM:612333 neXtProt:NX_Q14690
PharmGKB:PA134909758 InParanoid:Q14690 OMA:LHLADIY
OrthoDB:EOG4XKV63 PhylomeDB:Q14690 ChiTaRS:PDCD11
EvolutionaryTrace:Q14690 GenomeRNAi:22984 NextBio:43819
ArrayExpress:Q14690 Bgee:Q14690 CleanEx:HS_PDCD11
Genevestigator:Q14690 GermOnline:ENSG00000148843 Uniprot:Q14690
Length = 1871
Score = 548 (198.0 bits), Expect = 2.1e-51, P = 2.1e-51
Identities = 121/358 (33%), Positives = 192/358 (53%)
Query: 4 EEQQSEELLAKST-TQSNSIPDSLPQVGFTWGMAMEDLNLLKPNQXXXXXXXXXXXIKKV 62
EE + +L K T+ P GF W + ++ L P +
Sbjct: 1509 EEAEETNVLPKEKQTKPAEAPRLQLSSGFAWNVGLDSLTPALPPLAESSDSEEDEKPHQA 1568
Query: 63 KPKLTXXXXXXXXXXXXXRIRQAEDELLQNG-EPVSPDGFDRMLLGQPNNSELWVKYMAY 121
K + + + E+ L+ G +P S D FDR++L PN+S LW++YMA+
Sbjct: 1569 TIKKSKKERELEKQKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAF 1628
Query: 122 HLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCN 181
HLQATEIEKAR++A RAL I+ R E+++LNVW +LLNLE++YG++ESL + AV+ N
Sbjct: 1629 HLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFERAVQYN 1688
Query: 182 DETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTAR 241
+ KV++++ +IYA S + ++ +LK+ Q + ++++ LLR Q +
Sbjct: 1689 EPLKVFLHLADIYAKSEKFQEAGELYNRMLKRFRQEKA---VWIKYGAFLLRRSQAAASH 1745
Query: 242 HILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDML 301
+LQR L LP HV +I +FA E + GDA RA+A+ E+TL++YP R DVW VY+DM
Sbjct: 1746 RVLQRALECLPSKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMT 1805
Query: 302 VK-SDRVDLGRQVIQRAVTQXXXXXXXXXXXXXXXXXEEQYGDAEAVENVKKEIEQYV 358
+K + D+ R + +R + E+Q+G + V+ VK + +YV
Sbjct: 1806 IKHGSQKDV-RDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYV 1862
>UNIPROTKB|A7MB10 [details] [associations]
symbol:PDCD11 "Protein RRP5 homolog" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 SMART:SM00386 GO:GO:0005730 GO:GO:0006397
GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006364 InterPro:IPR022967
SMART:SM00316 EMBL:BC151277 IPI:IPI00867038 RefSeq:NP_001095573.1
UniGene:Bt.23141 ProteinModelPortal:A7MB10 SMR:A7MB10 PRIDE:A7MB10
GeneID:526867 KEGG:bta:526867 CTD:22984 eggNOG:COG0539
HOGENOM:HOG000088607 HOVERGEN:HBG108419 KO:K14792 NextBio:20874464
Uniprot:A7MB10
Length = 1874
Score = 541 (195.5 bits), Expect = 1.2e-50, P = 1.2e-50
Identities = 117/358 (32%), Positives = 192/358 (53%)
Query: 4 EEQQSEELLAKST-TQSNSIPDSLPQVGFTWGMAMEDLN-LLKPNQXXXXXXXXXXXIKK 61
EE + +L K T+ P GF W + ++ L L P+ +
Sbjct: 1511 EEAEEMSMLPKEKLTRPAEAPRLQLSSGFVWDVGLDTLTPALPPHGDSSDSEEDEKPEQA 1570
Query: 62 VKPKLTXXXXXXXXXXXXXRIRQAEDELLQNG-EPVSPDGFDRMLLGQPNNSELWVKYMA 120
+ K + + + E+ L+ G +P S + FDR++L P++S LW++YMA
Sbjct: 1571 TQKKKSKKERELEKQKAEKELSRIEEALMDPGRQPESAEDFDRLVLSSPSSSLLWLQYMA 1630
Query: 121 YHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRC 180
+HLQATEIEKAR++A RAL I+ R E+++LNVW +LLNLE++YG++ESL + AV+
Sbjct: 1631 FHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFERAVQY 1690
Query: 181 NDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTA 240
N+ KV++++ +IY S + ++ +LK+ Q + ++++ LLR G+ + +
Sbjct: 1691 NEPLKVFLHLADIYTKSEKFQEAGELYNRMLKRFRQEKA---VWVKYGAFLLRRGKAEAS 1747
Query: 241 RHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDM 300
++QR L LP HV +I +FA E + GDA RA+A+ E TL+ YP R DVW VY+DM
Sbjct: 1748 HRVMQRALECLPKKEHVDVIAKFAQLEFQLGDAERARAIFESTLSIYPKRTDVWSVYIDM 1807
Query: 301 LVKSDRVDLGRQVIQRAVTQXXXXXXXXXXXXXXXXXEEQYGDAEAVENVKKEIEQYV 358
++K R + +R + E+Q+G + V+ VK + +YV
Sbjct: 1808 IIKHGSQKEARAIFERVIHLSLAPKRMKFFFKRYLDYEKQHGSEKDVQAVKAKALEYV 1865
>UNIPROTKB|G5E5C4 [details] [associations]
symbol:PDCD11 "Protein RRP5 homolog" species:9913 "Bos
taurus" [GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126
PROSITE:PS50293 SMART:SM00386 GO:GO:0005829 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
UniGene:Bt.23141 OMA:LHLADIY GeneTree:ENSGT00390000012228
EMBL:DAAA02059036 EMBL:DAAA02059037 Ensembl:ENSBTAT00000012818
Uniprot:G5E5C4
Length = 1874
Score = 541 (195.5 bits), Expect = 1.2e-50, P = 1.2e-50
Identities = 117/358 (32%), Positives = 192/358 (53%)
Query: 4 EEQQSEELLAKST-TQSNSIPDSLPQVGFTWGMAMEDLN-LLKPNQXXXXXXXXXXXIKK 61
EE + +L K T+ P GF W + ++ L L P+ +
Sbjct: 1511 EEAEEMSMLPKEKLTRPAEAPRLQLSSGFVWDVGLDTLTPALPPHGDSSDSEEDEKPEQA 1570
Query: 62 VKPKLTXXXXXXXXXXXXXRIRQAEDELLQNG-EPVSPDGFDRMLLGQPNNSELWVKYMA 120
+ K + + + E+ L+ G +P S + FDR++L P++S LW++YMA
Sbjct: 1571 TQKKKSKKERELEKQKAEKELSRIEEALMDPGRQPESAEDFDRLVLSSPSSSLLWLQYMA 1630
Query: 121 YHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRC 180
+HLQATEIEKAR++A RAL I+ R E+++LNVW +LLNLE++YG++ESL + AV+
Sbjct: 1631 FHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFERAVQY 1690
Query: 181 NDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTA 240
N+ KV++++ +IY S + ++ +LK+ Q + ++++ LLR G+ + +
Sbjct: 1691 NEPLKVFLHLADIYTKSEKFQEAGELYNRMLKRFRQEKA---VWVKYGAFLLRRGKAEAS 1747
Query: 241 RHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDM 300
++QR L LP HV +I +FA E + GDA RA+A+ E TL+ YP R DVW VY+DM
Sbjct: 1748 HRVMQRALECLPKKEHVDVIAKFAQLEFQLGDAERARAIFESTLSIYPKRTDVWSVYIDM 1807
Query: 301 LVKSDRVDLGRQVIQRAVTQXXXXXXXXXXXXXXXXXEEQYGDAEAVENVKKEIEQYV 358
++K R + +R + E+Q+G + V+ VK + +YV
Sbjct: 1808 IIKHGSQKEARAIFERVIHLSLAPKRMKFFFKRYLDYEKQHGSEKDVQAVKAKALEYV 1865
>RGD|1304933 [details] [associations]
symbol:Pdcd11 "programmed cell death 11" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005829 "cytosol" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA;ISO] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126
PROSITE:PS50293 SMART:SM00386 RGD:1304933 GO:GO:0005829
GO:GO:0005634 GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 CTD:22984 KO:K14792
OrthoDB:EOG4XKV63 GeneTree:ENSGT00390000012228 IPI:IPI00870468
RefSeq:NP_001101074.2 UniGene:Rn.136636 ProteinModelPortal:D3ZNI3
Ensembl:ENSRNOT00000027512 GeneID:309458 KEGG:rno:309458
NextBio:660838 ArrayExpress:D3ZNI3 Uniprot:D3ZNI3
Length = 1876
Score = 537 (194.1 bits), Expect = 3.2e-50, P = 3.2e-50
Identities = 118/360 (32%), Positives = 190/360 (52%)
Query: 4 EEQQSEELLAKSTTQSNSIPDSLPQV----GFTWGMAMEDLNLLKPNQXXXXXXXXXXXI 59
E++ E + QS P +P++ GF W + ++ L P +
Sbjct: 1512 EDEVEEPKVPPGGKQSK--PTEVPRLQLSKGFIWDVGLDSLTPALPLRGESSDSEEDEQP 1569
Query: 60 KKVKPKLTXXXXXXXXXXXXXRIRQAEDELLQNG-EPVSPDGFDRMLLGQPNNSELWVKY 118
+ K K + + E+ L+ G +P S D FDR++L PN+S LW++Y
Sbjct: 1570 HQAKKKKGKKERELEKQKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSILWLQY 1629
Query: 119 MAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAV 178
MA+HLQATEIEKAR++A RAL I+ R E+++LNVW +LLNLE++YG++ESL + AV
Sbjct: 1630 MAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLAKVFERAV 1689
Query: 179 RCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKD 238
+ N+ KV++++ +IY S + ++ +LK+ Q + ++++ +L Q
Sbjct: 1690 QYNEPLKVFLHLADIYTKSEKFKEAGELYNRMLKRFRQEKA---VWIKYGAFVLGRSQAG 1746
Query: 239 TARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYV 298
+ +LQR L LP HV +I +FA E + GD RA+A+ E+TLT+YP R DVW VY+
Sbjct: 1747 ASHRVLQRALECLPTKEHVDVIVKFAQLEFQLGDVERAKAIFENTLTTYPKRTDVWSVYI 1806
Query: 299 DMLVKSDRVDLGRQVIQRAVTQXXXXXXXXXXXXXXXXXEEQYGDAEAVENVKKEIEQYV 358
DM +K R + +R + E+Q+G + V+ VK + +YV
Sbjct: 1807 DMTIKHGSQKEVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYV 1866
>MGI|MGI:1341788 [details] [associations]
symbol:Pdcd11 "programmed cell death 11" species:10090 "Mus
musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0008134
"transcription factor binding" evidence=ISO] [GO:0043123 "positive
regulation of I-kappaB kinase/NF-kappaB cascade" evidence=TAS]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 SMART:SM00386 MGI:MGI:1341788 GO:GO:0005829
GO:GO:0006915 GO:GO:0005730 GO:GO:0006355 GO:GO:0043123
GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006364 InterPro:IPR022967
SMART:SM00316 CTD:22984 eggNOG:COG0539 HOVERGEN:HBG108419 KO:K14792
OMA:LHLADIY OrthoDB:EOG4XKV63 EMBL:AK129080 EMBL:BC038503
EMBL:BC055276 EMBL:BC070468 EMBL:AK003899 EMBL:AK141450
EMBL:AK147950 EMBL:AK161803 EMBL:AF055668 EMBL:AF055669
IPI:IPI00551454 RefSeq:NP_035183.2 UniGene:Mm.41166 HSSP:Q14690
ProteinModelPortal:Q6NS46 SMR:Q6NS46 STRING:Q6NS46
PhosphoSite:Q6NS46 PaxDb:Q6NS46 PRIDE:Q6NS46 DNASU:18572
Ensembl:ENSMUST00000072141 GeneID:18572 KEGG:mmu:18572
UCSC:uc008hup.1 GeneTree:ENSGT00390000012228 InParanoid:Q9CTD8
NextBio:294412 Bgee:Q6NS46 Genevestigator:Q6NS46 Uniprot:Q6NS46
Length = 1862
Score = 536 (193.7 bits), Expect = 4.0e-50, P = 4.0e-50
Identities = 118/345 (34%), Positives = 184/345 (53%)
Query: 17 TQSNSIPDSLPQVGFTWGMAMEDLNLLKP--NQXXXXXXXXXXXIKKVKPKLTXXXXXXX 74
T+S +P GF W + ++ L P + KK K K
Sbjct: 1515 TKSTEVPRLHLSSGFLWDVGLDSLTPALPLREESSDSEDEQPHQAKKKKGKKERELEKQK 1574
Query: 75 XXXXXXRIRQAEDELLQNG-EPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARS 133
RI +A L+ G +P S D FDR++L PN+S LW++YMA+HLQATEIEKAR+
Sbjct: 1575 AEKELSRIEEA---LMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARA 1631
Query: 134 IARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEI 193
+A RAL I+ R E+++LNVW +LLNLE++YG++ESL + AV+ N+ KV++++ +I
Sbjct: 1632 VAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFERAVQYNEPLKVFLHLADI 1691
Query: 194 YAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPP 253
Y S + ++ +LK+ Q + ++++ +L Q + +LQR L LP
Sbjct: 1692 YTKSEKYKEAGELYNRMLKRFRQEKA---VWIKYGAFVLGRSQAGASHRVLQRALECLPA 1748
Query: 254 AVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQV 313
HV +I +FA E + GD RA+A+ E+TL++YP R DVW VY+DM +K R +
Sbjct: 1749 KEHVDVIVKFAQLEFQLGDVERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQTAVRDI 1808
Query: 314 IQRAVTQXXXXXXXXXXXXXXXXXEEQYGDAEAVENVKKEIEQYV 358
+R + E+Q+G + V+ VK + +YV
Sbjct: 1809 FERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYV 1853
>ZFIN|ZDB-GENE-030131-4076 [details] [associations]
symbol:pdcd11 "programmed cell death 11"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00575 PROSITE:PS50126 PROSITE:PS50293
SMART:SM00386 ZFIN:ZDB-GENE-030131-4076 GO:GO:0003723 GO:GO:0005622
GO:GO:0006396 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
HOGENOM:HOG000088607 HOVERGEN:HBG108419 OMA:LHLADIY
OrthoDB:EOG4XKV63 GeneTree:ENSGT00390000012228 EMBL:CR812943
IPI:IPI00817258 UniGene:Dr.76104 Ensembl:ENSDART00000074342
Ensembl:ENSDART00000124833 Uniprot:B8JIP9
Length = 1816
Score = 520 (188.1 bits), Expect = 1.9e-48, P = 1.9e-48
Identities = 116/361 (32%), Positives = 192/361 (53%)
Query: 3 VEEQQSEELLAKSTTQSNSIPDSLPQV--GFTWGMAMEDLNLLKPNQXXXXXXXXXXXIK 60
V +++S ++ K Q P+ L QV F W + L P +K
Sbjct: 1456 VSDKKSGKVKVKCKEQE---PNRL-QVTSSFPWESTLGSLTPFAPADDNQNSSEDEEEVK 1511
Query: 61 KVKPKLTXXXXXXXXXXXXXRIRQAEDELLQNG-EPVSPDGFDRMLLGQPNNSELWVKYM 119
K + ++ + E EL+ P + F+R+LL P++S LW++YM
Sbjct: 1512 SKPAKKSRKELKQEQQNTEQKLSKLEAELMDTSVRPDNSTAFERLLLSSPDSSLLWLQYM 1571
Query: 120 AYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVR 179
A+HLQAT+IE+AR++A RAL I+ R E+++LN+W ++LNLE++YGT +SLQ+ A++
Sbjct: 1572 AFHLQATQIEQARAVAERALKTISFREEQEKLNIWVAMLNLENMYGTPDSLQKVFERAIQ 1631
Query: 180 CNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDT 239
+ VY + +IYA S +I++ ES K ++K+ Q + +YL T LLR Q D
Sbjct: 1632 YCEPLLVYQQLADIYAKSEKIKEAESLYKSMVKRFRQDKA---VYLSYGTFLLRQRQSDA 1688
Query: 240 ARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVD 299
A +LQR L +L HV LI RFA E +FG++ +A+++ + LT+YP R D+W V++D
Sbjct: 1689 ANALLQRALQSLSSKEHVDLIARFARLEFQFGNSEKAKSMFDKVLTTYPKRTDLWSVFID 1748
Query: 300 MLVKSDRVDLGRQVIQRAVTQXXXXXXXXXXXXXXXXXEEQYGDAEAVENVKKEIEQYVR 359
++VK R++ R + E++ G E ++ VK++ +YV
Sbjct: 1749 LMVKHGSQKEVRELFDRVIHLSVSVKKIKFFFKRYLEYEKKNGTPETIQVVKQKALEYVE 1808
Query: 360 N 360
+
Sbjct: 1809 S 1809
>POMBASE|SPCC1183.07 [details] [associations]
symbol:SPCC1183.07 "U3 snoRNP-associated protein Rrp5
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005730
"nucleolus" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=ISO] [GO:0030515 "snoRNA binding" evidence=ISO]
[GO:0032040 "small-subunit processome" evidence=ISO] [GO:0042134
"rRNA primary transcript binding" evidence=ISO] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126 SMART:SM00386
PomBase:SPCC1183.07 GO:GO:0005730 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0030515 GO:GO:0006397
Gene3D:1.25.40.10 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0006364 GO:GO:0042134 GO:GO:0032040
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 eggNOG:COG0539
KO:K14792 OMA:LHLADIY PIR:T40847 RefSeq:NP_587890.1
ProteinModelPortal:O74835 STRING:O74835 EnsemblFungi:SPCC1183.07.1
GeneID:2538897 KEGG:spo:SPCC1183.07 HOGENOM:HOG000167551
OrthoDB:EOG4N07P1 NextBio:20800076 Uniprot:O74835
Length = 1690
Score = 470 (170.5 bits), Expect = 1.5e-44, Sum P(2) = 1.5e-44
Identities = 99/270 (36%), Positives = 151/270 (55%)
Query: 95 PVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVW 154
P + F+R LL PN+S LW+ YMAYHL E+++AR + +RAL+ IN R E+++LNVW
Sbjct: 1423 PSTAADFERQLLSSPNSSLLWISYMAYHLNLNELQEAREVGKRALSTINYREEDEKLNVW 1482
Query: 155 TSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKA 214
+LLNLE YGT++SL+E EA D VY + I ++ + ++L+LK
Sbjct: 1483 MALLNLEVAYGTEDSLKEVFKEACAYCDALIVYEKLCGILIKGGKVDLADEYMQLMLKNF 1542
Query: 215 GQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDAS 274
Q S +++Q AT LL + + A +L+R L +LP + HV +I +FA+ E K GD
Sbjct: 1543 KQVPS---VWIQYATFLLNNDKAEKAHGLLERSLQSLPKSEHVGIIEKFAILEFKNGDPE 1599
Query: 275 RAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQXXXXXXXXXXXXXX 334
R + + E L+SYP R+D+W V +DM +K D + R++ QR +
Sbjct: 1600 RGRTIFEGLLSSYPKRLDLWNVLIDMEMKQDDPSIVRRLFQRLLALNLSTKKAKFAFKKW 1659
Query: 335 XXXEEQYGDAEAVENVKKEIEQYVRNSKNK 364
E+ GD E E VK+ +YV S ++
Sbjct: 1660 LAYEKNIGDDEGAEQVKRRAIEYVSESHSE 1689
Score = 44 (20.5 bits), Expect = 1.5e-44, Sum P(2) = 1.5e-44
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 2 DVEEQQSEELLAKSTTQSNSIPDSLPQVGFTW 33
DV+ ++ E L + P +L GF W
Sbjct: 1346 DVQSEEVENLESAGDEDEEEEPSALQANGFDW 1377
>FB|FBgn0039182 [details] [associations]
symbol:CG5728 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126
SMART:SM00386 EMBL:AE014297 GO:GO:0005634 GO:GO:0006397
GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0000381 InterPro:IPR022967
SMART:SM00316 eggNOG:COG0539 KO:K14792 GeneTree:ENSGT00390000012228
EMBL:AY061461 RefSeq:NP_651245.1 UniGene:Dm.1316 SMR:Q9VC94
STRING:Q9VC94 EnsemblMetazoa:FBtr0084632 GeneID:42899
KEGG:dme:Dmel_CG5728 UCSC:CG5728-RA FlyBase:FBgn0039182
InParanoid:Q9VC94 OMA:NEKSFPR OrthoDB:EOG4JQ2CH GenomeRNAi:42899
NextBio:831166 Uniprot:Q9VC94
Length = 1430
Score = 467 (169.5 bits), Expect = 5.7e-43, P = 5.7e-43
Identities = 115/358 (32%), Positives = 184/358 (51%)
Query: 13 AKSTT-QSNSIPDS--LPQVGFTWGMAMEDLNLLKPNQXXXXXXXXXXXIKK---VKPKL 66
AKS T +SN LP V W +D+N K +K K +L
Sbjct: 1078 AKSETPKSNGAEGKSRLPGVSSFWE---DDVNQSKEGSSDEDEELNVAETQKNAAKKKRL 1134
Query: 67 TXXXXXXXXXXXXXRIRQAEDELLQNGEPVSP----DGFDRMLLGQPNNSELWVKYMAYH 122
+ R+R+ E+ +N +P + D ++R+++ QPNNS W+KY+A+
Sbjct: 1135 SAKEKAKAEIKEEQRLREIEE---RNADPKARLETIDQYERLVIAQPNNSISWLKYIAFL 1191
Query: 123 LQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND 182
L TEIEKAR++ARRA++ I+ R ++ N+W++LLN+E +Y + + L EA+ CND
Sbjct: 1192 LSNTEIEKARALARRAISTISFRETQELRNMWSALLNMELVYSN--NFDDVLKEALNCND 1249
Query: 183 ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARH 242
++Y+++++I + + L S + +L K + + ++ A LG+ D +
Sbjct: 1250 PLEIYISVVDILKKNKRKDRLSSVLTTVLNKF---KTELRVWPVAAEAYFWLGKSDQVHN 1306
Query: 243 ILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLV 302
+LQR L LP H+ I FA K + AQ LL+ +TSYP R+D+W VYVDML+
Sbjct: 1307 LLQRALRALPNQEHIPCIVSFAKLYAKHDNNDMAQTLLDDVVTSYPKRIDIWSVYVDMLI 1366
Query: 303 KSDRVDLGRQVIQRAVTQXXXXXXXXXXXXXXXXXEEQYGDAEAVENVKKEIEQYVRN 360
K+ +D R V++RAV Q EE +G V VK++ EQ+V+N
Sbjct: 1367 KAGLIDSARNVLERAVVQKLKPNKMQVIYKKYLQLEENHGTDATVAKVKQQAEQWVKN 1424
>SGD|S000004842 [details] [associations]
symbol:RRP5 "RNA binding protein involved in synthesis of
both 18S and 5.8S rRNAs" species:4932 "Saccharomyces cerevisiae"
[GO:0030686 "90S preribosome" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0032040 "small-subunit processome"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0000480 "endonucleolytic cleavage in 5'-ETS of
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR011990
Pfam:PF00575 PROSITE:PS50126 SMART:SM00386 SGD:S000004842
GO:GO:0005730 GO:GO:0008266 EMBL:BK006946 Gene3D:1.25.40.10
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:Z49939
GO:GO:0030686 GO:GO:0032040 GO:GO:0000447 GO:GO:0000472
InterPro:IPR022967 SMART:SM00316 GO:GO:0000464 GO:GO:0000480
eggNOG:COG0539 KO:K14792 GeneTree:ENSGT00390000012228
HOGENOM:HOG000167551 OrthoDB:EOG4N07P1 PIR:S57596
RefSeq:NP_013956.1 ProteinModelPortal:Q05022 SMR:Q05022
DIP:DIP-6535N IntAct:Q05022 MINT:MINT-680694 STRING:Q05022
PaxDb:Q05022 PeptideAtlas:Q05022 EnsemblFungi:YMR229C GeneID:855269
KEGG:sce:YMR229C CYGD:YMR229c OMA:FYGNVRG NextBio:978879
Genevestigator:Q05022 GermOnline:YMR229C Uniprot:Q05022
Length = 1729
Score = 424 (154.3 bits), Expect = 3.0e-38, P = 3.0e-38
Identities = 90/270 (33%), Positives = 143/270 (52%)
Query: 95 PVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVW 154
P S F+R+L+G PN+S +W+ YMA+ LQ +EIEKAR +A RAL IN R E ++LN+W
Sbjct: 1458 PESVADFERLLIGNPNSSVVWMNYMAFQLQLSEIEKARELAERALKTINFREEAEKLNIW 1517
Query: 155 TSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKA 214
++LNLE+ +GT+E+L+E A + D ++ ++ IY S + K KK
Sbjct: 1518 IAMLNLENTFGTEETLEEVFSRACQYMDSYTIHTKLLGIYEISEKFDKAAELFKATAKKF 1577
Query: 215 GQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDAS 274
G V+I++ L+ ++ AR IL L LP H+ ++ +FA E GD
Sbjct: 1578 GG--EKVSIWVSWGDFLISHNEEQEARTILGNALKALPKRNHIEVVRKFAQLEFAKGDPE 1635
Query: 275 RAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQXXXXXXXXXXXXXX 334
R ++L E + P R+D+W VYVD VK+ + +R +T+
Sbjct: 1636 RGRSLFEGLVADAPKRIDLWNVYVDQEVKAKDKKKVEDLFERIITKKITRKQAKFFFNKW 1695
Query: 335 XXXEEQYGDAEAVENVKKEIEQYVRNSKNK 364
EE GD + +E VK + +YV + +++
Sbjct: 1696 LQFEESEGDEKTIEYVKAKATEYVASHESQ 1725
>TAIR|locus:2088644 [details] [associations]
symbol:RRP5 "Ribosomal RNA Processing 5" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0001510 "RNA methylation" evidence=RCA]
[GO:0006606 "protein import into nucleus" evidence=RCA] [GO:0006364
"rRNA processing" evidence=IMP] [GO:0009553 "embryo sac
development" evidence=IMP] InterPro:IPR003029 InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 SMART:SM00386 GO:GO:0005886 EMBL:CP002686
GO:GO:0005730 GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 KO:K14792 OMA:LHLADIY
IPI:IPI00527296 RefSeq:NP_187803.4 UniGene:At.50175 PRIDE:F4J8K6
EnsemblPlants:AT3G11964.1 GeneID:820370 KEGG:ath:AT3G11964
Uniprot:F4J8K6
Length = 1896
Score = 415 (151.1 bits), Expect = 3.1e-37, P = 3.1e-37
Identities = 93/283 (32%), Positives = 156/283 (55%)
Query: 81 RIRQAEDELLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALT 140
+I+ AE LL++ P + D F++++ PN+S +W+KYMA+ L +IEKARSIA RAL
Sbjct: 1616 KIQAAEGRLLEHHAPENADEFEKLVRSSPNSSFVWIKYMAFMLSLADIEKARSIAERALR 1675
Query: 141 VINIRNEEDRLNVWTSLLNLEHLYGT--KESLQECLHEAVRCNDETKVYMNMMEIYAASA 198
INIR EE++LN+W + NLE+ +G +ES+++ A + D KVY+ ++ +Y +
Sbjct: 1676 TINIREEEEKLNIWVAYFNLENEHGNPPEESVKKVFERARQYCDPKKVYLALLGVYERTE 1735
Query: 199 QIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVT 258
Q + + + ++KK Q S I+L+ L+ + + + ++ R L LP H+
Sbjct: 1736 QYKLADKLLDEMIKKFKQ---SCKIWLRKIQSSLKQNE-EAIQSVVNRALLCLPRHKHIK 1791
Query: 259 LITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAV 318
I++ A+ E K G A R ++L E L YP R D+W VY+D ++ D+ R + +RA+
Sbjct: 1792 FISQTAILEFKCGVADRGRSLFEGVLREYPKRTDLWSVYLDQEIRLGEDDVIRSLFERAI 1851
Query: 319 TQXXXXXXXXXXXXXXXXXEEQYGDAEAVENVKKEIEQYVRNS 361
+ E+ GD E VE VK+ +Y ++
Sbjct: 1852 SLSLPPKKMKFLFKKFLEYEKSVGDEERVEYVKQRAMEYANST 1894
>CGD|CAL0005606 [details] [associations]
symbol:orf19.1578 species:5476 "Candida albicans" [GO:0030686
"90S preribosome" evidence=IEA] [GO:0032040 "small-subunit
processome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF00575 PROSITE:PS50126 PROSITE:PS50293 SMART:SM00386
CGD:CAL0005606 GO:GO:0003723 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 Gene3D:2.40.50.140 InterPro:IPR012340
EMBL:AACQ01000008 EMBL:AACQ01000007 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539 KO:K14792
RefSeq:XP_722479.1 RefSeq:XP_722620.1 ProteinModelPortal:Q5ALK0
STRING:Q5ALK0 GeneID:3635820 GeneID:3635933 KEGG:cal:CaO19.1578
KEGG:cal:CaO19.9151 Uniprot:Q5ALK0
Length = 1722
Score = 404 (147.3 bits), Expect = 4.0e-36, P = 4.0e-36
Identities = 87/282 (30%), Positives = 147/282 (52%)
Query: 90 LQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEED 149
L P S F+R+L+G PN+S LW+ YM++ LQ +E++KAR I RAL IN R E++
Sbjct: 1443 LNTRAPQSTADFERLLIGNPNSSILWMNYMSFQLQLSEVDKAREIGERALKTINYREEQE 1502
Query: 150 RLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKL 209
+LN+W +LLNLE+ +GT ESL++ ++++ D ++ ++ IY S + +
Sbjct: 1503 KLNIWIALLNLENTFGTDESLEDTFKKSIQYMDSFTMHEKLVNIYKMSEKFDQAKQLFNR 1562
Query: 210 LLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENK 269
+ KK G+ +N ++ + LL +D IL + LN LP H+ L+ +FA E +
Sbjct: 1563 MTKKFGKV---LNTWVLYGSFLLDQNSQDEMHEILAKALNILPKREHIELVKKFAQLEFQ 1619
Query: 270 FGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDR-------VDLGRQV---IQRAVT 319
GD + ++L E + P R+D+W VY+D +K D D+ +V +R ++
Sbjct: 1620 KGDPEQGRSLFEGLVADAPKRIDLWNVYIDQEIKQDNKTSDEDDTDIKSKVEDLFERVLS 1679
Query: 320 QXXXXXXXXXXXXXXXXXEEQYGDAEAVENVKKEIEQYVRNS 361
+ EE D + VK + +YV+N+
Sbjct: 1680 KKITRKQAKFFFNKWLNYEEDKQDENMIARVKSKAAEYVQNN 1721
>ASPGD|ASPL0000042752 [details] [associations]
symbol:rrp5 species:162425 "Emericella nidulans"
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126
SMART:SM00386 GO:GO:0005634 EMBL:BN001307 GO:GO:0006397
GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
EMBL:AACD01000034 eggNOG:COG0539 KO:K14792 HOGENOM:HOG000167551
OrthoDB:EOG4N07P1 OMA:FYGNVRG RefSeq:XP_659751.1
ProteinModelPortal:Q5BBD3 STRING:Q5BBD3
EnsemblFungi:CADANIAT00008825 GeneID:2875769 KEGG:ani:AN2147.2
Uniprot:Q5BBD3
Length = 1780
Score = 402 (146.6 bits), Expect = 6.9e-36, P = 6.9e-36
Identities = 95/276 (34%), Positives = 149/276 (53%)
Query: 88 ELLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNE 147
EL NG P S ++R+LLG+PN+S LW+KYMA+ L+ E+EKAR IA RAL I I +
Sbjct: 1520 ELDANG-PQSVADYERLLLGEPNSSLLWLKYMAFQLELGEVEKAREIAERALRTITIGQD 1578
Query: 148 EDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTV 207
++LN+W ++LNLE+ YG ++L+E A + ND ++Y + IY S + +
Sbjct: 1579 TEKLNIWVAMLNLENTYGDDDTLEEVFKRACQYNDTQEIYERLTSIYIQSGKNEKADELF 1638
Query: 208 KLLLKKAGQTHSSVNIYLQCATLLL-RLGQKDTARHILQRGLNNLPPAVHVTLITRFALA 266
K LKK +S ++ AT L + D R +L R L +LP HV ++FA
Sbjct: 1639 KTALKKKVFPNSP-KFFINYATFLYDTMAAPDRGRGLLSRALQSLPKNTHVETTSKFAQL 1697
Query: 267 ENKF--GDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQXXXX 324
E + GD R + + E L+S+P RVD+W V +D+ +K+ V+ R ++ +
Sbjct: 1698 EFRSPNGDVERGRTVFEGLLSSFPKRVDLWNVLLDLEIKNGDVEQARFFFKKWLD----- 1752
Query: 325 XXXXXXXXXXXXXEEQYGDAEAVENVKKEIEQYVRN 360
EE+ GD + VE +K + +YV++
Sbjct: 1753 ------------FEEKKGDEKTVEEIKAKAAEYVKS 1776
>DICTYBASE|DDB_G0290181 [details] [associations]
symbol:DDB_G0290181 "RNA binding S1 domain-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR003029 InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 PROSITE:PS50126
PROSITE:PS50293 SMART:SM00386 dictyBase:DDB_G0290181 GO:GO:0003723
GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AAFI02000158
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539 KO:K14792
RefSeq:XP_635864.1 ProteinModelPortal:Q54GG4
EnsemblProtists:DDB0238055 GeneID:8627520 KEGG:ddi:DDB_G0290181
OMA:QRNIWIA Uniprot:Q54GG4
Length = 909
Score = 380 (138.8 bits), Expect = 4.7e-34, P = 4.7e-34
Identities = 86/289 (29%), Positives = 146/289 (50%)
Query: 82 IRQAEDELLQNG-EPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALT 140
I++ ED L N P P F+RM+LG PN+S +W+K+M+Y+L +EI KAR I RA+
Sbjct: 622 IQEREDLLANNNVAPEGPQDFERMILGTPNSSYIWIKFMSYYLGLSEINKAREIGERAIK 681
Query: 141 VINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQI 200
I ++ N+W ++ NLE+LYGT +SL + +++ D +Y+ ++ I + +
Sbjct: 682 KIIPTQVLEQRNIWIAMYNLENLYGTPDSLLKLFQRSIQYQDPKTMYLTIINILENTGKF 741
Query: 201 RDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLI 260
E K+L KK G+ HS+ ++ + LL+ + IL R L LP + +I
Sbjct: 742 ERTEEYFKMLFKKDGK-HSA-KVWCRYGEFLLKCNNIEVFNSILSRALEILPKKKQIKVI 799
Query: 261 TRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDM------LVKSDRV--DLGRQ 312
+FA E K GD R + + E +++YP R D+W +Y+DM +KS + + R
Sbjct: 800 NKFAQLEYKLGDIERGRTIFEGLVSNYPNRTDIWNIYLDMELRDKESIKSSKELKEKIRM 859
Query: 313 VIQRAVTQXXXXXXXXXXXXXXXXXEEQYGDAEAVENVKKEIEQYVRNS 361
+ R + E+++G VKK ++V ++
Sbjct: 860 LFNRTIALKVSDRNIKQFFKRFLQFEKEFGSNFTTNEVKKLAIKFVESN 908
>WB|WBGene00002850 [details] [associations]
symbol:let-716 species:6239 "Caenorhabditis elegans"
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0018991 "oviposition" evidence=IMP] [GO:0008406 "gonad
development" evidence=IMP] [GO:0007276 "gamete generation"
evidence=IMP] InterPro:IPR003029 InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 PROSITE:PS50126
PROSITE:PS50293 SMART:SM00386 GO:GO:0009792 GO:GO:0040007
GO:GO:0018991 GO:GO:0040010 GO:GO:0008406 GO:GO:0002119
GO:GO:0003723 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0007276
InterPro:IPR022967 SMART:SM00316 EMBL:FO080367 eggNOG:COG0539
KO:K14792 GeneTree:ENSGT00390000012228 PIR:E88481
RefSeq:NP_498398.1 ProteinModelPortal:Q18038 SMR:Q18038
STRING:Q18038 PaxDb:Q18038 EnsemblMetazoa:C16A3.3 GeneID:175906
KEGG:cel:CELE_C16A3.3 CTD:175906 WormBase:C16A3.3
HOGENOM:HOG000018736 InParanoid:Q18038 OMA:NMEVAYG NextBio:890242
Uniprot:Q18038
Length = 1743
Score = 332 (121.9 bits), Expect = 1.9e-28, P = 1.9e-28
Identities = 78/279 (27%), Positives = 147/279 (52%)
Query: 84 QAEDELLQNGEPV--SPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTV 141
+++DE +N E + S + R++ PN++ W++YM++ ++ +++ AR A AL
Sbjct: 1458 ESDDE--ENIELIEKSEEDHSRLVRSDPNSAINWIEYMSHFIEKSDLAAARKTAEEALGA 1515
Query: 142 INIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIR 201
IN ++ L +WT+ LN+E YG ++Q+ A + + V+ + +IY +
Sbjct: 1516 INPTESDELLKIWTAYLNMEVAYGDAATVQKVFERACKNANAYTVHKTLSKIYQKFEKNA 1575
Query: 202 DLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV-HVTLI 260
+ ++ ++KK + + ++ A L+ + AR +L R L + P A HV LI
Sbjct: 1576 EATQILEQMVKKFRA--NQLEVWTLLAEHLMTQNDQKAARELLPRALKSAPKAQQHVQLI 1633
Query: 261 TRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ 320
++FA E K GDA R + LLE +T++P + D+W VY + ++K ++ R+V++RA
Sbjct: 1634 SKFAQLEFKHGDAERGRTLLEGLVTAHPKKTDLWLVYAEAVLKHLGIEHARKVLERACNL 1693
Query: 321 XXXXXXXXXXXXXXXXXEEQYGDAEAVENVKKEIEQYVR 359
E ++GDA AVE VK + E++++
Sbjct: 1694 GFSIHKMRPLYKKWLEMESKHGDAAAVELVKAKAEKFLQ 1732
>ASPGD|ASPL0000053069 [details] [associations]
symbol:AN1259 species:162425 "Emericella nidulans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386 GO:GO:0008380
EMBL:BN001308 GO:GO:0006397 GO:GO:0005681 EMBL:AACD01000017
GO:GO:0007049 Gene3D:1.25.40.10 eggNOG:NOG327505 KO:K12869
RefSeq:XP_658863.1 STRING:Q5BDX1 GeneID:2877035 KEGG:ani:AN1259.2
HOGENOM:HOG000207972 OMA:KFTFAKI OrthoDB:EOG4NKG44 Uniprot:Q5BDX1
Length = 673
Score = 119 (46.9 bits), Expect = 0.00045, P = 0.00045
Identities = 53/250 (21%), Positives = 97/250 (38%)
Query: 82 IRQAEDELLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTV 141
IR E E+ + + DR + P +LW KY+ I R + R ++
Sbjct: 110 IRYIESEMRNRNINHARNLLDRAVTILPRVDKLWYKYVYMEETLGNIPGTRQVFERWMSW 169
Query: 142 INIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMM---EIYAASA 198
E D W++ + LE Y E + + E + ++ E Y S
Sbjct: 170 -----EPDE-GAWSAYIKLEKRYNEFERARAIFQRFTIVHPEPRNWIKWARFEEEYGTSD 223
Query: 199 QIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVT 258
+R++ L ++ G+ +++ A +L + + AR I + L+ LP + +T
Sbjct: 224 LVREVYG---LAVETLGEDFMDEKLFIAYARFETKLKEYERARAIYKYALDRLPRSKSIT 280
Query: 259 LITRFALAENKFGDASRAQALL--------EHTLTSYPARVDVWGVYVDMLVKSDRVDLG 310
L + E +FGD + ++ E L DVW + + +S +
Sbjct: 281 LHKAYTTFEKQFGDREGVENVILAKRRVQYEEQLKENLRNYDVWFDFARLEEQSGDPERV 340
Query: 311 RQVIQRAVTQ 320
R V +RA+ Q
Sbjct: 341 RDVYERAIAQ 350
>TAIR|locus:2161363 [details] [associations]
symbol:AT5G45990 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006396 "RNA processing" evidence=IEA;ISS]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 Pfam:PF05843 PROSITE:PS50293 SMART:SM00386
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006397
Gene3D:1.25.40.10 EMBL:AB006698 eggNOG:NOG327505
HOGENOM:HOG000207972 IPI:IPI00521045 RefSeq:NP_199411.1
UniGene:At.55396 ProteinModelPortal:Q9FNM3 SMR:Q9FNM3 PaxDb:Q9FNM3
PRIDE:Q9FNM3 EnsemblPlants:AT5G45990.1 GeneID:834639
KEGG:ath:AT5G45990 TAIR:At5g45990 InParanoid:Q9FNM3 OMA:SAFIRYA
PhylomeDB:Q9FNM3 ProtClustDB:CLSN2684756 Genevestigator:Q9FNM3
Uniprot:Q9FNM3
Length = 673
Score = 108 (43.1 bits), Expect = 0.00096, Sum P(2) = 0.00096
Identities = 36/186 (19%), Positives = 84/186 (45%)
Query: 101 FDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNL 160
++R L G+ N LWVKY + ++ + AR++ R++T++ D+L W + +
Sbjct: 101 WERALEGEYRNHTLWVKYAEFEMKNKFVNNARNVWDRSVTLLP---RVDQL--WEKYIYM 155
Query: 161 EHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSS 220
E G ++ + + + K ++ ++ + ++E + + ++ H
Sbjct: 156 EEKLGNVTGARQIFERWMNWSPDQKAWLCFIKF---ELRYNEIERA-RSIYERFVLCHPK 211
Query: 221 VNIYLQCATL-LLRLGQKDTARHILQRGLNNLPPAVHVTLI-TRFALAENKFGDASRAQA 278
V+ +++ A + R GQ AR + +R ++ L ++ FA E + + RA+
Sbjct: 212 VSAFIRYAKFEMKRGGQVKLAREVYERAVDKLANDEEAEILFVSFAEFEERCKEVERARF 271
Query: 279 LLEHTL 284
+ + L
Sbjct: 272 IYKFAL 277
Score = 51 (23.0 bits), Expect = 0.00096, Sum P(2) = 0.00096
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 338 EEQYGDAEAVENV---KKEIEQYVRNSKN 363
E+QYGD E +E+ KK E SKN
Sbjct: 296 EKQYGDKEGIEDAIVGKKRFEYEDEVSKN 324
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.130 0.368 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 365 324 0.00086 116 3 11 22 0.42 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 20
No. of states in DFA: 609 (65 KB)
Total size of DFA: 210 KB (2117 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 24.85u 0.09s 24.94t Elapsed: 00:00:18
Total cpu time: 24.86u 0.09s 24.95t Elapsed: 00:00:20
Start: Thu Aug 15 13:18:51 2013 End: Thu Aug 15 13:19:11 2013