RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17788
(365 letters)
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural
protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Length = 308
Score = 120 bits (302), Expect = 9e-32
Identities = 48/281 (17%), Positives = 90/281 (32%), Gaps = 29/281 (10%)
Query: 108 QPNNSELWVKYMAY--------HLQATEIEKARSIARRALTV-----------INIRNEE 148
+ ++W KY+ + Q ++ + L V +
Sbjct: 4 EAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQS 63
Query: 149 DRLNVWTSLLNLEHLYGTKESLQECLHEAVR--CNDETKVYMNMMEIYAASAQIRDLEST 206
+L +N L+ + A+ +Y + + + + S
Sbjct: 64 SKLLAEKGDMNNAKLF--SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSI 121
Query: 207 VKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALA 266
LL + V Y+Q R + R I ++ + HV + AL
Sbjct: 122 YNRLLAIEDIDPTLV--YIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVT--AALM 177
Query: 267 ENK-FGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ-KLPP 324
E D S A + E L Y + Y+D L + + R + +R +T LPP
Sbjct: 178 EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237
Query: 325 KKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNSKNKW 365
+K ++ ++L E GD ++ V+K R
Sbjct: 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGK 278
Score = 40.8 bits (95), Expect = 4e-04
Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 1/72 (1%)
Query: 101 FDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNL 160
F+ L + E + Y+ Y E R + R LT ++ E +W L
Sbjct: 192 FELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL-PPEKSGEIWARFLAF 250
Query: 161 EHLYGTKESLQE 172
E G S+ +
Sbjct: 251 ESNIGDLASILK 262
Score = 34.6 bits (79), Expect = 0.037
Identities = 17/164 (10%), Positives = 40/164 (24%), Gaps = 16/164 (9%)
Query: 51 EDEEEEVEIKKVKPKLTKAEKLAAAKAEEARIRQAEDELLQNGEPVSPDGFDRMLLGQPN 110
+ EE ++ +KV + + I+ + G F +
Sbjct: 107 DYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART 166
Query: 111 NSELWVKY--MAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKE 168
++V M Y+ + A I L + D + ++
Sbjct: 167 RHHVYVTAALMEYYCS-KDKSVAFKIFELGL-----KKYGDIPEYVLAYIDYLSHLNEDN 220
Query: 169 SLQECLHEAVRCNDET--------KVYMNMMEIYAASAQIRDLE 204
+ + + ++ A I +E
Sbjct: 221 NTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat,
CLP1, PCF11, structural protein; 2.30A {Kluyveromyces
lactis} PDB: 4e85_A 4eba_A
Length = 679
Score = 103 bits (256), Expect = 4e-24
Identities = 28/262 (10%), Positives = 76/262 (29%), Gaps = 18/262 (6%)
Query: 101 FDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNL 160
+ + E+W Y + + + + + SL
Sbjct: 332 YMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAV----LAFSLSEQ 387
Query: 161 EHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSS 220
L ++ + + I+ A + + + T + + + +
Sbjct: 388 YELNTKIPEIETTILSC------------IDRIHLDLAALMEDDPTNESAINQLKSKLT- 434
Query: 221 VNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALL 280
+Y + R+ +R I + + + + D A +L
Sbjct: 435 -YVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVL 493
Query: 281 EHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQ 340
E L + + Y+D L+ + + + + ++ + LK ++ K + E +
Sbjct: 494 ELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESK 553
Query: 341 YGDAEAVENVKKEIEQYVRNSK 362
G +V ++K +
Sbjct: 554 VGSLNSVRTLEKRFFEKFPEVN 575
Score = 34.3 bits (77), Expect = 0.066
Identities = 34/281 (12%), Positives = 89/281 (31%), Gaps = 30/281 (10%)
Query: 101 FDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVI--NIRNEEDRLNVWTSLL 158
+ M+ QP + L+VK + +H+ + ++ + RL++ +
Sbjct: 55 LNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKM 114
Query: 159 NLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKK----- 213
+ L CL + + ND + + + + I E ++++
Sbjct: 115 EELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVV 174
Query: 214 ---AGQTHSSVNIYLQCATLLLRL---------GQKDTARHILQRGLNNLPPAVHVTLIT 261
A S+ + + L + R + + L P ++
Sbjct: 175 DKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL-CQPMDCLESMWQ 233
Query: 262 RFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQK 321
R+ E + + + E + ++ +Y D L + + + T+
Sbjct: 234 RYTQWEQDVNQLTARRHIGELS----AQYMNARSLYQDWLNITKGLKRNLPITLNQATES 289
Query: 322 LPPK------KLKPLYMKWLKLEEQYGDAEAVENVKKEIEQ 356
PK + ++++W++ E + + K +
Sbjct: 290 NLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTY 330
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural
protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Length = 530
Score = 97.2 bits (241), Expect = 2e-22
Identities = 50/334 (14%), Positives = 104/334 (31%), Gaps = 26/334 (7%)
Query: 53 EEEEVEIKKVKPKLTKAEKLAAAKAEEARIRQAEDELLQNGEPVSPDGFDRMLLGQPNNS 112
+ E I K ++ ++ E +++ + +P + +
Sbjct: 172 NKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYE-TVMKGLDRNAPSVPPQNTPQEAQQV 230
Query: 113 ELWVKYMAYHLQ--------ATEIEKARSIARRALTVIN---------IRNEEDRLNVWT 155
++W KY+ + ++ + L V+ + E +
Sbjct: 231 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLA 290
Query: 156 SLLNLEHLYGTKESLQECLHEAVR--CNDETKVYMNMMEIYAASAQIRDLESTVKLLLKK 213
++ + + A+ +Y + + + + S LL
Sbjct: 291 EKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 350
Query: 214 AGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENK-FGD 272
+ V I Q R + R I ++ + HV + AL E D
Sbjct: 351 EDIDPTLVYI--QYMKFARRAEGIKSGRMIFKKAREDARTRHHVYV--TAALMEYYCSKD 406
Query: 273 ASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ-KLPPKKLKPLY 331
S A + E L Y + Y+D L + + R + +R +T LPP+K ++
Sbjct: 407 KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 466
Query: 332 MKWLKLEEQYGDAEAVENVKKEIEQYVRNSKNKW 365
++L E GD ++ V+K R
Sbjct: 467 ARFLAFESNIGDLASILKVEKRRFTAFREEYEGK 500
Score = 53.7 bits (128), Expect = 5e-08
Identities = 31/268 (11%), Positives = 75/268 (27%), Gaps = 52/268 (19%)
Query: 101 FDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNL 160
++R++ P++ W Y+ ++A +K + +R L + +++W L+
Sbjct: 35 YERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL------HIDLWKCYLSY 88
Query: 161 EHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRD-LESTVKLLLKKAGQTHS 219
+ E ++ + L K G
Sbjct: 89 -----------------------------VRETKGKLPSYKEKMAQAYDFALDKIGMEIM 119
Query: 220 SVNIYLQCATLLLRLG---------QKDTARHILQRGLNNLPPAVHVTLITRFALAENKF 270
S I++ L + + R + QRG N P L + E
Sbjct: 120 SYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN-PMINIEQLWRDYNKYEEGI 178
Query: 271 GDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPL 330
+ + + + AR ++ L R + +
Sbjct: 179 NIHLAKKMIEDRSRDYMNARRVAK------EYETVMKGLDRNAPSVPPQNTPQEAQQVDM 232
Query: 331 YMKWLKLEEQYGDAEAVENVKKEIEQYV 358
+ K+++ E+ + + + +
Sbjct: 233 WKKYIQWEKSNPLRTEDQTLITKRVMFA 260
Score = 31.4 bits (70), Expect = 0.46
Identities = 14/96 (14%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Query: 265 LAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPP 324
+ E + +A+ E + +P+ W +Y++ +K+ D ++ QR + + +
Sbjct: 20 IREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK-VLH 78
Query: 325 KKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRN 360
L Y+ +++ E + E + + + +
Sbjct: 79 IDLWKCYLSYVR-ETKGKLPSYKEKMAQAYDFALDK 113
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A
{Encephalitozoon cuniculi} PDB: 2uy1_B
Length = 493
Score = 84.9 bits (209), Expect = 3e-18
Identities = 28/263 (10%), Positives = 73/263 (27%), Gaps = 47/263 (17%)
Query: 101 FDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNL 160
+ +L E++ Y Y + + EKA+ + R + + D + +
Sbjct: 202 HNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMS------DGMFLSLY---- 251
Query: 161 EHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSS 220
Y +M+ A ++ S + + +
Sbjct: 252 --------------------------YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKEL 285
Query: 221 VNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENK-FGDASRAQAL 279
+ + +L+ + R + N + A E G + +
Sbjct: 286 DLLRINHLNYVLKKRGLELFRKLFIELGNEGV---GPHVFIYCAFIEYYATGSRATPYNI 342
Query: 280 LEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEE 339
L +P + + L++ + R + +R +K ++ ++ E
Sbjct: 343 FSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL-------EKTSRMWDSMIEYEF 395
Query: 340 QYGDAEAVENVKKEIEQYVRNSK 362
G E + + ++
Sbjct: 396 MVGSMELFRELVDQKMDAIKADA 418
Score = 44.9 bits (105), Expect = 3e-05
Identities = 37/268 (13%), Positives = 80/268 (29%), Gaps = 23/268 (8%)
Query: 101 FDRMLLGQPNNSELWVKYMAYHLQATE-IEKARSIARRALTVINIRNEEDRL--NVWTSL 157
F R L N +LW+ Y+ Y + ++ K + L + L
Sbjct: 37 FGRCLKKSYN-LDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEE 95
Query: 158 LNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQT 217
+E E ++ A++ + + + + + K++
Sbjct: 96 GKIEDEQTRIEKIRNGYMRALQTP--MGSLSELWKDFENFELELNKITGKKIVGDTLPIF 153
Query: 218 HSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQ 277
SS Y L RG + A + L + SR
Sbjct: 154 QSSFQRY--------------QQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMH 199
Query: 278 ALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKL 337
+ + L S+ +V+ Y + L+ + + ++V++R + ++ LY +
Sbjct: 200 FIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGI--EMSDGMFLSLYYGLVMD 257
Query: 338 EEQYGDAEAVENVKKEIEQYVRNSKNKW 365
EE + + +K
Sbjct: 258 EEA-VYGDLKRKYSMGEAESAEKVFSKE 284
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.9 bits (126), Expect = 9e-08
Identities = 48/323 (14%), Positives = 94/323 (29%), Gaps = 123/323 (38%)
Query: 4 EEQQSEELLAKSTTQSNSIPDSLPQ------------VG-------FTW----------- 33
+ + LL K + P LP+ + TW
Sbjct: 299 TPDEVKSLLLKYL---DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 34 GMAME-DLNLLKPN------------QDDS------------EDEEEEVEIKKVKPKLTK 68
+E LN+L+P + + + +V + V KL K
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV--VVNKLHK 413
Query: 69 AEKLAAAKAEEARIR----------QAEDE------LLQNGEPVSPDGFDRMLLGQPNNS 112
L + +E+ I + E+E ++ + P FD L P
Sbjct: 414 Y-SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI--PKTFDSDDLIPPYLD 470
Query: 113 ELWVKYMAYHLQATEIEKARSIARRALTVIN-----IRNEEDRLNVWTSLLNLEHLYGTK 167
+ + ++ +HL+ E + ++ R IR++ N S+LN
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT------- 523
Query: 168 ESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQC 227
LQ+ ++ Y I D + + L+ + ++ +
Sbjct: 524 --LQQ------------------LKFY--KPYICDNDPKYERLVN------AILDFLPKI 555
Query: 228 ATLLLRLGQKDTARHILQRGLNN 250
L+ D +L+ L
Sbjct: 556 EENLICSKYTD----LLRIALMA 574
Score = 47.9 bits (113), Expect = 4e-06
Identities = 58/382 (15%), Positives = 116/382 (30%), Gaps = 113/382 (29%)
Query: 12 LAKSTTQSNSIPDSLPQVGFTWGMAMEDLNLLKPNQDDSEDEEEEVEIKKVKPKLTKAE- 70
+A S + + F W LNL N ++ E + + ++ P T
Sbjct: 166 VALDVCLSYKVQCKMDFKIF-W------LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 71 -------KLAAAKAEEARI---RQAEDELL-----QNGEPVSPDGFD---RML------- 105
++ + +AE R+ + E+ LL QN + + F+ ++L
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW--NAFNLSCKILLTTRFKQ 276
Query: 106 ---------------------LGQPNNSELWVKYMAYHLQATEI-EKARSIARRALTVI- 142
L L +KY+ + ++ + + R L++I
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL--DCRPQDLPREVLTTNPRRLSIIA 334
Query: 143 -NIRNEEDRLNVW-------------TSLLNLEHLYGTKESLQECLHEAVRCNDETKVYM 188
+IR+ + W +SL LE ++ +
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE-----PAEYRKMFDRLSVFPPSAHIPT 389
Query: 189 NMMEIYAASAQIRDLESTVKLLLKKA----GQTHSSVNIYLQCATLLLRLGQK---DTAR 241
++ + D+ V L K + S+++I ++ L L K + A
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP----SIYLELKVKLENEYAL 445
Query: 242 H--ILQR-------GLNNLPP-----------AVHVTLIT---RFALAENKFGDASRAQA 278
H I+ ++L P H+ I R L F D +
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ 505
Query: 279 LLEHTLTSYPARVDVWGVYVDM 300
+ H T++ A + +
Sbjct: 506 KIRHDSTAWNASGSILNTLQQL 527
Score = 30.6 bits (68), Expect = 1.0
Identities = 30/256 (11%), Positives = 74/256 (28%), Gaps = 81/256 (31%)
Query: 136 RRALT------VINIRNEEDRLN--VWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVY 187
+ L+ +I ++ WT L E + Q+ + E +R N Y
Sbjct: 43 KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV------QKFVEEVLRIN-----Y 91
Query: 188 MNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHI---- 243
+M + + + +Y++ L Q ++
Sbjct: 92 KFLMSPIKTEQRQPSMMTR----------------MYIEQRDRLYNDNQVFAKYNVSRLQ 135
Query: 244 ----LQRGLNNLPPAVHVTL-----ITRFALAENKFGDASRAQALLEHTLTS-YPARVDV 293
L++ L L PA +V + + +A L + + ++
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWVA---------LDVCLSYKVQCKMDFKI-F 185
Query: 294 WGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEA-----VE 348
W ++L V + L+ L + D + +
Sbjct: 186 W------------LNLKNCNSPETVL-----EMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 349 NVKKEIEQYVRNSKNK 364
+++ E+ + +++ +
Sbjct: 229 SIQAELRRLLKSKPYE 244
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.0 bits (119), Expect = 9e-07
Identities = 54/379 (14%), Positives = 107/379 (28%), Gaps = 142/379 (37%)
Query: 69 AEKLAAAKAE-EARIRQAEDELLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAY---HLQ 124
A +L + + + + + + EP +P +EL K++ Y ++
Sbjct: 30 ASQL---QEQFNKILPEPTEGFAADDEPTTP-------------AELVGKFLGYVSSLVE 73
Query: 125 ATEIEKARSIARRALTVINIRNEEDRL---NVWTSLLNLEH-----LYGTKESLQECLHE 176
+++ + + LT E L ++ H L ++ E
Sbjct: 74 PSKVGQFDQVLNLCLTEF----ENCYLEGNDI--------HALAAKLLQENDTTLVKTKE 121
Query: 177 AVRCNDETKVYMNMMEIYAASAQI-RDLESTVK-LLLKKA------------GQTHSSVN 222
++ Y A R + L + GQ + +
Sbjct: 122 LIKN------Y------ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ--GNTD 167
Query: 223 IYLQ-------------------CATLLLRLG-QKDTARHILQRGLN---------NLPP 253
Y + A L L A + +GLN N P
Sbjct: 168 DYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPD 227
Query: 254 -------AVHVTLIT-----RFALAENKFGD-----ASRAQALLEHT---LTS-YPARVD 292
+ LI + + G S + H+ +T+ A D
Sbjct: 228 KDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETD 287
Query: 293 VWGVYVDMLVKSDRVD--LGRQVIQRAVTQKLPPKKLK---------PLYMKWLKLEEQY 341
W + + K+ V +G + + LPP L+ P M L
Sbjct: 288 SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM--L------ 339
Query: 342 GDAEAVENV-KKEIEQYVR 359
++ N+ +++++ YV
Sbjct: 340 ----SISNLTQEQVQDYVN 354
Score = 37.7 bits (87), Expect = 0.007
Identities = 63/388 (16%), Positives = 114/388 (29%), Gaps = 140/388 (36%)
Query: 4 EEQQSE-ELLAK------STTQSNSIP--DSLPQVGFTWGMAMEDLNLLKPNQDD----- 49
+E + EL+ K S + + + D + + T E+ L+ N D
Sbjct: 52 DEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLT---EFEN-CYLEGN--DIHALA 105
Query: 50 -SEDEEEEVEIKKVKPKLTKAEKLAAAKAEEARIRQAEDELLQNGEPVSPDGFDRMLL-- 106
+E + + K K +L K A A+ +++ L + +G +++
Sbjct: 106 AKLLQENDTTLVKTK-ELIKNYITARIMAKRPFDKKSNSALFRA----VGEGNAQLVAIF 160
Query: 107 -GQPNN----SEL-------------WVKYMAYHLQ--ATEIEKARSIARRALTVIN-IR 145
GQ N EL +K+ A L A + + L ++ +
Sbjct: 161 GGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE 220
Query: 146 NEEDR--------------LNVWTSLLNLE---HLYG-TKESLQECLHEAVRCNDETKVY 187
N + L L + L G T L+ L A +
Sbjct: 221 NPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ----- 275
Query: 188 MNMMEIYAAS--AQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLG---QKDTARH 242
+ A A+ ES + K T+L +G + +
Sbjct: 276 ----GLVTAVAIAETDSWESFFVSVRK--------------AITVLFFIGVRCY-EAYPN 316
Query: 243 ILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDML- 301
+LPP++ + EN G S P ML
Sbjct: 317 T------SLPPSILEDSL------ENNEGVPS-------------P-----------MLS 340
Query: 302 VKSDRVDLGRQVIQRAVTQ---KLPPKK 326
+ +L ++ +Q V + LP K
Sbjct: 341 IS----NLTQEQVQDYVNKTNSHLPAGK 364
Score = 37.0 bits (85), Expect = 0.011
Identities = 50/305 (16%), Positives = 92/305 (30%), Gaps = 116/305 (38%)
Query: 119 MAYHLQATEIEKARSIARRA---------LTVINI-RNEEDRLNVWTSLLNLEHLYGTKE 168
M L T + A+ + RA ++++I N L + H G K
Sbjct: 1631 MGMDLYKTS-KAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTI--------HFGGEKG 1681
Query: 169 SLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNI----- 223
+ +R N Y M+ + D + + + K+ + +S
Sbjct: 1682 -------KRIREN-----YSAMI--FETIV---DGKLKTEKIFKEINEHSTSYTFRSEKG 1724
Query: 224 ------YLQCATLLLRLGQKDTARHILQRGLNNLPPAV--H----VTLITRFALAENKFG 271
+ Q A L+ + +GL H ALA
Sbjct: 1725 LLSATQFTQPALTLMEKAA---FEDLKSKGLIPADATFAGHSLGEYA-----ALA----- 1771
Query: 272 DASRAQAL-LEHT--LTSYPARVDVWGVYVDMLVKSDR----------VDLGRQVIQ--- 315
S A + +E + Y R G+ + + V D ++ GR
Sbjct: 1772 --SLADVMSIESLVEVVFY--R----GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQ 1823
Query: 316 ---RAVTQKLPPKKLKPLYMKWLKLE--------EQY---GDAEAVE---NVKKEIEQYV 358
+ V +++ + WL +E +QY GD A++ NV I+ +
Sbjct: 1824 EALQYVVERVGKRT------GWL-VEIVNYNVENQQYVAAGDLRALDTVTNVLNFIK--L 1874
Query: 359 RNSKN 363
+
Sbjct: 1875 QKIDI 1879
Score = 30.4 bits (68), Expect = 1.3
Identities = 37/246 (15%), Positives = 67/246 (27%), Gaps = 97/246 (39%)
Query: 189 NM-MEIYAASAQIRDL-ESTVKLLLKKAGQTHSSVNIYLQCATLLLRL--GQKDTARHIL 244
M M++Y S +D+ G S ++I + L G+K + I
Sbjct: 1630 GMGMDLYKTSKAAQDVWNRADNHFKDTYGF--SILDIVINNPVNLTIHFGGEK--GKRIR 1685
Query: 245 QRGLNNLPPAVHVTLITRFALAENKFGDASR-------------------AQ-ALLEHTL 284
+ N + T++ E F + + Q AL L
Sbjct: 1686 E----NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALT---L 1738
Query: 285 TSYPARVDVW---GV--------------YV------DMLVKSDRVDLGRQVIQRAVT-Q 320
A + G+ Y D++ V++ V R +T Q
Sbjct: 1739 MEK-AAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEV---VFYRGMTMQ 1794
Query: 321 KLPPKK-----------LKPLYMKWLKLEEQYGDAEAVENVKKEI--------------- 354
P+ + P + EA++ V + +
Sbjct: 1795 VAVPRDELGRSNYGMIAINPGRV------AASFSQEALQYVVERVGKRTGWLVEIVNYNV 1848
Query: 355 --EQYV 358
+QYV
Sbjct: 1849 ENQQYV 1854
Score = 28.9 bits (64), Expect = 3.8
Identities = 37/206 (17%), Positives = 66/206 (32%), Gaps = 66/206 (32%)
Query: 48 DDSEDEEEEVEIKKVKPKLTK------AEKL--------AAAKAEEARIRQAEDELLQNG 93
D + + E++ K++ T L A E+A + + L
Sbjct: 1697 VDGKLKTEKI-FKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPA 1755
Query: 94 EPV----SPDGFDRMLLGQPNNSELWVKYMAYHLQAT----EIEKARSIAR-RALTVINI 144
+ S LG E Y A L + IE + R +T+
Sbjct: 1756 DATFAGHS--------LG-----E----YAA--LASLADVMSIESLVEVVFYRGMTMQVA 1796
Query: 145 --RNEEDRLNVWTSLLNLE--HLYGTKESLQECLHEAVRCNDETKVYMNMMEI------- 193
R+E R N +N ++E+LQ + + ++EI
Sbjct: 1797 VPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGW------LVEIVNYNVEN 1850
Query: 194 --YAASAQIRDLESTVKLL----LKK 213
Y A+ +R L++ +L L+K
Sbjct: 1851 QQYVAAGDLRALDTVTNVLNFIKLQK 1876
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein
superhelix, transc activator; 1.45A {Escherichia coli}
SCOP: a.118.8.2
Length = 373
Score = 33.8 bits (77), Expect = 0.076
Identities = 26/184 (14%), Positives = 59/184 (32%), Gaps = 18/184 (9%)
Query: 127 EIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKV 186
++A +A+ AL + R+ + L + H G + + + + V
Sbjct: 29 NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV 88
Query: 187 YMNMMEIYAASAQI-----------RDLESTVKLLLKKAGQTHSSV-NIYLQCATLLLRL 234
+ + ++I E +L+ ++ + + A LL
Sbjct: 89 WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW 148
Query: 235 GQKDTARHILQRGLNNLPPA------VHVTLITRFALAENKFGDASRAQALLEHTLTSYP 288
+ D A + G+ L + ++ + +LA +A LE+ L +
Sbjct: 149 ARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGK 208
Query: 289 ARVD 292
D
Sbjct: 209 YHSD 212
Score = 27.3 bits (60), Expect = 9.1
Identities = 18/133 (13%), Positives = 37/133 (27%), Gaps = 10/133 (7%)
Query: 127 EIEKARSIARRALTVINIRNEEDRL--NVWTSLLNLEHLYGTKESLQECLHEAVRCNDET 184
+++ ARS R ++ N + + G K + L +
Sbjct: 189 DLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFAN 248
Query: 185 K-----VYMNMMEIYAASAQIRDLESTVKLLL---KKAGQTHSSVNIYLQCATLLLRLGQ 236
+ N+ + E ++ L + L L + G+
Sbjct: 249 NHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGR 308
Query: 237 KDTARHILQRGLN 249
K A+ +L L
Sbjct: 309 KSDAQRVLLDALK 321
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.7 bits (71), Expect = 0.27
Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 10/54 (18%)
Query: 47 QDDSEDEEEEVEIKKVKPKLTK-----AEKLAAAK-----AEEARIRQAEDELL 90
D + E+ +K K L + +E++ K A++A +Q + +++
Sbjct: 101 LDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADII 154
Score = 27.4 bits (60), Expect = 6.0
Identities = 8/59 (13%), Positives = 19/59 (32%), Gaps = 15/59 (25%)
Query: 51 EDEEEEVEIKKVKPKLTKAEKLAAAKAE---------------EARIRQAEDELLQNGE 94
E++ + ++ K+ + E AK + + R A+ Q +
Sbjct: 92 EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPD 150
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.56
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 9/33 (27%)
Query: 55 EEVEIKKVKPKLTKAEKL-----AAAKAEEARI 82
E+ +KK++ L KL A A A +A +
Sbjct: 18 EKQALKKLQASL----KLYADDSAPALAIKATM 46
Score = 29.9 bits (66), Expect = 0.85
Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 13/39 (33%)
Query: 4 EEQQSEELLAKSTTQSNSI----PDSLPQVGFTWGMAME 38
E+Q ++L S+ DS P + ME
Sbjct: 18 EKQALKKL-------QASLKLYADDSAPALAIK--ATME 47
Score = 28.8 bits (63), Expect = 1.7
Identities = 3/11 (27%), Positives = 9/11 (81%)
Query: 199 QIRDLESTVKL 209
++ L++++KL
Sbjct: 21 ALKKLQASLKL 31
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle,
transferase, spindle assembly checkpoint, mitosi repeat,
KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Length = 152
Score = 29.5 bits (66), Expect = 1.0
Identities = 25/114 (21%), Positives = 41/114 (35%), Gaps = 7/114 (6%)
Query: 144 IRNEE--DRLNVWTSLLN--LEHLYGTKESLQECLHEAVRCNDETKVYMN---MMEIYAA 196
+++ + D L W + E+ KE L L ++ + K Y N +
Sbjct: 17 MQSYKGNDPLGEWERYIQWVEENFPENKEYLITLLEHLMKEFLDKKKYHNDPRFISYCLK 76
Query: 197 SAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNN 250
A+ L G S +Y+ A L G+ A +LQRG+ N
Sbjct: 77 FAEYNSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN 130
>3p0s_A Capsid protein VP; icosahedral virus capsid, virus-like particle,
capsid protei barrel; 3.10A {Bombyx mori densovirus 1}
Length = 494
Score = 30.3 bits (67), Expect = 1.1
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 96 VSPDGFDRMLLGQP--NNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRL 151
V P L Q NN +V YM Y+ + +S+ + + +NIRNE++ L
Sbjct: 322 VPPVALTATKLNQSASNNLNAFVDYMGYNYFGEQKCAPQSMPKFMIGFVNIRNEDNSL 379
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle
checkpoint, TPR motif, all-alpha domain, MAD3-like
domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Length = 202
Score = 29.6 bits (66), Expect = 1.3
Identities = 25/144 (17%), Positives = 56/144 (38%), Gaps = 20/144 (13%)
Query: 124 QATEIEKARSIARRALTVINIRNEEDRLNVWTSLLN-LEHLY--GTKESLQECLHEAV-R 179
Q +++ + + + L ++ + +D L+++ + + Y ES QE L + R
Sbjct: 4 QHSQLNQTKIAYEQRLLN-DLEDMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMER 62
Query: 180 C-----------NDET--KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQ 226
C ND K+++ + ++ ++ + + K G S Y +
Sbjct: 63 CLIYIQDMETYRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSL--FYEE 120
Query: 227 CATLLLRLGQKDTARHILQRGLNN 250
+ LL A+ +L+ G N
Sbjct: 121 FSKLLENAQFFLEAKVLLELGAEN 144
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 29.4 bits (66), Expect = 2.2
Identities = 23/145 (15%), Positives = 48/145 (33%), Gaps = 11/145 (7%)
Query: 38 EDLNLLKPNQDDSEDEEEEVEIKKVKPKLTKAEKLAAAKAEEARIRQAEDELLQNGEPVS 97
E + L N + DEE ++ +K +K + A + ++ E
Sbjct: 235 EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKED----AAFLRSLYMLKLNKTSHEDELRR 290
Query: 98 PDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSL 157
+ + + G +S+L + + +I + L + L+V+
Sbjct: 291 AEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKIL-----EIDPYNLDVYPLH 345
Query: 158 LN-LEHLYGTKESLQECLHEAVRCN 181
L L G K L ++ V +
Sbjct: 346 LASLHES-GEKNKLYLISNDLVDRH 369
>2prd_A Pyrophosphate phosphohydrolase; 2.00A {Thermus thermophilus} SCOP:
b.40.5.1
Length = 174
Score = 28.0 bits (63), Expect = 3.3
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 325 KKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQY 357
K L+ KW+K+ A+E V+ I +Y
Sbjct: 140 KALEAKKGKWVKVTGWRDRKAALEEVRACIARY 172
>1ap8_A Translation initiation factor EIF4E; RNA CAP; HET: M7G; NMR
{Saccharomyces cerevisiae} SCOP: d.86.1.1 PDB: 1rf8_A*
Length = 213
Score = 28.2 bits (62), Expect = 4.1
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 141 VINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLH 175
V++IR ++ +WT + E L ++ L
Sbjct: 153 VLSIRKGGNKFALWTKSEDKEPLLRIGGKFKQVLK 187
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 27.9 bits (62), Expect = 6.5
Identities = 14/157 (8%), Positives = 33/157 (21%), Gaps = 6/157 (3%)
Query: 101 FDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNL 160
+ +P + W+ L + +R L L +
Sbjct: 12 LRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGL-----ALHPGHPEAVARLGRV 66
Query: 161 EHLYGTKESLQECLHEAVRCN-DETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHS 219
L +A + + + + + Q + + +
Sbjct: 67 RWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPY 126
Query: 220 SVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVH 256
L L D ++ + AV
Sbjct: 127 ITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVE 163
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A
{Mycobacterium tuberculosis} PDB: 1sjp_A
Length = 546
Score = 27.5 bits (62), Expect = 7.1
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 238 DTARHILQRGLNNLPPAVHVTL 259
+ AR L+RGLN L AV VTL
Sbjct: 9 EEARRGLERGLNALADAVKVTL 30
>3eb9_A 6-phosphogluconolactonase; catalytic mechanism, pentose phosphate
pathway, hydrolase, zinc binding site; HET: FLC; 2.00A
{Trypanosoma brucei} PDB: 2j0e_A* 3e7f_A*
Length = 266
Score = 27.4 bits (61), Expect = 7.7
Identities = 9/41 (21%), Positives = 15/41 (36%)
Query: 67 TKAEKLAAAKAEEARIRQAEDELLQNGEPVSPDGFDRMLLG 107
T A+ + A+A ++ FD +LLG
Sbjct: 119 TSADAMRVAEAYGKQLASLLPLKSVGEAGPKVPVFDVVLLG 159
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding,
ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP:
a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*
Length = 543
Score = 27.5 bits (62), Expect = 7.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 238 DTARHILQRGLNNLPPAVHVTL 259
+ AR L+RG+N + AV VTL
Sbjct: 9 EAARRALERGVNAVANAVKVTL 30
>1qus_A Lytic murein transglycosylase B; alpha-helical protein with AN
five-stranded antiparallel beta-sheet, hydrolase; HET:
BCN; 1.70A {Escherichia coli} SCOP: d.2.1.6 PDB: 1d0k_A*
1d0m_A* 1qdr_A* 1qdt_A 1d0l_A* 1qut_A* 1ltm_A*
Length = 322
Score = 27.3 bits (61), Expect = 8.1
Identities = 13/73 (17%), Positives = 18/73 (24%), Gaps = 18/73 (24%)
Query: 272 DASRAQALLEHTLTSYPA-RVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPL 330
QA T P+ W Y + D V G +
Sbjct: 54 RLMDNQA--PTTSVKPPSGPNGAWLRYRKKFITPDNVQNGVVFWNQ-------------- 97
Query: 331 YMKWL-KLEEQYG 342
Y L + + YG
Sbjct: 98 YEDALNRAWQVYG 110
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle,
KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Length = 223
Score = 27.0 bits (59), Expect = 8.9
Identities = 21/116 (18%), Positives = 33/116 (28%), Gaps = 8/116 (6%)
Query: 143 NIRNEEDRLNVWTSLLN-LEHLY---GTKES-LQECLHEAVRCNDETKVYMN---MMEIY 194
+ +D L VW + + TK S L L R +Y + + I+
Sbjct: 64 TSESLDDPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIW 123
Query: 195 AASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNN 250
D + L S Y + A G A + Q+G
Sbjct: 124 MQYVNYIDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM 179
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone;
HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1
c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A
1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A
3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A
3cau_A ...
Length = 547
Score = 27.1 bits (61), Expect = 9.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 238 DTARHILQRGLNNLPPAVHVTL 259
+ A + RG+N L AV VTL
Sbjct: 9 NDAGVKMLRGVNVLADAVKVTL 30
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP:
a.129.1.1 c.8.5.1 d.56.1.1
Length = 545
Score = 27.1 bits (61), Expect = 9.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 238 DTARHILQRGLNNLPPAVHVTL 259
AR + +G+N L AV VTL
Sbjct: 10 SDARDRMLKGVNILADAVKVTL 31
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 297
Score = 26.9 bits (59), Expect = 9.8
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 53 EEEEVEIKKVK-PKLTKAEK---LAAAKAEEARIRQAEDE 88
++EV+ K+ PK++ A+K +A KA R ++ E
Sbjct: 257 PKKEVKKKRWNRPKMSLAQKKDRVAQKKASFLRAQERAAE 296
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 3u5i_D 3izc_Q 3izs_Q
3o58_E 3o5h_E 3jyw_E 1s1i_E
Length = 297
Score = 27.0 bits (59), Expect = 9.9
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 44 KPNQDDSEDEEEEVEIKKVK-PKLTKAEKLAAAKAEEARIRQAE 86
KP + E+ E KK + KL+K E+ A A+ A + +
Sbjct: 254 KPTEKKFTKEQYAAESKKYRQTKLSKEERAARVAAKIAALAGQQ 297
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.129 0.363
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,455,932
Number of extensions: 330019
Number of successful extensions: 786
Number of sequences better than 10.0: 1
Number of HSP's gapped: 737
Number of HSP's successfully gapped: 70
Length of query: 365
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 270
Effective length of database: 4,049,298
Effective search space: 1093310460
Effective search space used: 1093310460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.0 bits)