RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17788
         (365 letters)



>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa
           subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 308

 Score = 81.9 bits (201), Expect = 3e-18
 Identities = 43/268 (16%), Positives = 88/268 (32%), Gaps = 23/268 (8%)

Query: 113 ELWVKYMAY------HLQATEIEKAR--SIARRALTVIN---------IRNEEDRLNVWT 155
           ++W KY+ +        +   +   R      + L V+           +  E    +  
Sbjct: 9   DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLA 68

Query: 156 SLLNLEHLYGTKESLQECLHEAVR--CNDETKVYMNMMEIYAASAQIRDLESTVKLLLKK 213
              ++ +     +        A+         +Y    +   +  +   + S    LL  
Sbjct: 69  EKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 128

Query: 214 AGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDA 273
             +      +Y+Q      R     + R I ++   +     HV  +T   +      D 
Sbjct: 129 --EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHV-YVTAALMEYYCSKDK 185

Query: 274 SRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVT-QKLPPKKLKPLYM 332
           S A  + E  L  Y    +    Y+D L   +  +  R + +R +T   LPP+K   ++ 
Sbjct: 186 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWA 245

Query: 333 KWLKLEEQYGDAEAVENVKKEIEQYVRN 360
           ++L  E   GD  ++  V+K      R 
Sbjct: 246 RFLAFESNIGDLASILKVEKRRFTAFRE 273


>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 388

 Score = 27.3 bits (59), Expect = 3.0
 Identities = 35/255 (13%), Positives = 77/255 (30%), Gaps = 11/255 (4%)

Query: 101 FDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNL 160
             ++   +P+N+ + +   + H Q   ++++   +  A+        +    +  +  NL
Sbjct: 22  CMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI--------KQNPLLAEAYSNL 73

Query: 161 EHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSS 220
            ++Y  +  LQE +            +++     AA+                A Q +  
Sbjct: 74  GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD 133

Query: 221 VNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALL 280
           +         LL+   +               P       +      N  G+   A    
Sbjct: 134 LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHF 192

Query: 281 EHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQ 340
           E  +T  P  +D +    ++L ++   D       R     L P              EQ
Sbjct: 193 EKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR--ALSLSPNHAVVHGNLACVYYEQ 250

Query: 341 YGDAEAVENVKKEIE 355
                A++  ++ IE
Sbjct: 251 GLIDLAIDTYRRAIE 265


>d2prda_ b.40.5.1 (A:) Inorganic pyrophosphatase {Thermus
           thermophilus [TaxId: 274]}
          Length = 174

 Score = 26.4 bits (58), Expect = 4.6
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 325 KKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQY 357
           K L+    KW+K+        A+E V+  I +Y
Sbjct: 140 KALEAKKGKWVKVTGWRDRKAALEEVRACIARY 172


>d2qxfa1 c.55.3.5 (A:8-474) Exonuclease I {Escherichia coli K12
           (Escherichia coli K-12) [TaxId: 83333]}
          Length = 467

 Score = 26.1 bits (56), Expect = 7.8
 Identities = 11/50 (22%), Positives = 19/50 (38%)

Query: 311 RQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRN 360
           +Q       Q   P+ L+    +   L +QY D +    + K + QY   
Sbjct: 417 QQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYADE 466


>d1scta_ a.1.1.2 (A:) Hemoglobin I {Ark clam (Scapharca
           inaequivalvis) [TaxId: 6561]}
          Length = 149

 Score = 25.5 bits (55), Expect = 8.6
 Identities = 7/54 (12%), Positives = 20/54 (37%)

Query: 69  AEKLAAAKAEEARIRQAEDELLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYH 122
             K+  ++A +A +R++   L  + E         +   +P+    + +     
Sbjct: 5   VAKVCGSEAIKANLRRSWGVLSADIEATGLMLMSNLFTLRPDTKTYFTRLGDVQ 58


>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale
           cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 268

 Score = 25.8 bits (56), Expect = 9.0
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 45  PNQDDSEDEEEEVEIKKVKPKLTKAEKLA-AAKAEEARIRQ 84
           P +   E+ EE+  ++KVK  +T+ +    A   EE +++Q
Sbjct: 214 PEKATQEEVEEKNILEKVKAAMTEEDLAELARATEELKLKQ 254


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.129    0.363 

Gapped
Lambda     K      H
   0.267   0.0470    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,295,174
Number of extensions: 59947
Number of successful extensions: 163
Number of sequences better than 10.0: 1
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 15
Length of query: 365
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 278
Effective length of database: 1,213,086
Effective search space: 337237908
Effective search space used: 337237908
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.8 bits)