BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1779
(204 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|91084563|ref|XP_973600.1| PREDICTED: similar to proteasome beta 3 subunit [Tribolium
castaneum]
Length = 210
Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 86/200 (43%), Positives = 117/200 (58%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA+VAM G C +I D TIA K+ +M PHLY+ PGL D EK
Sbjct: 12 NGGAMVAMKGDKCVSIASDKRFGIQAQTIATNFQKIFEMGPHLYVGLPGLATDTQTVMEK 71
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E P+SP F+A+ S LY + P F+ PI+AG P + E ++ +D
Sbjct: 72 LRFRKNLYELKENRPMSPKVFSAMLSNMLYENRF-GPFFVEPIVAGLDPGTYEPYICNMD 130
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC + DFV GG+A + + G+ ES W+P L P+ LFE SQ +I A +RD SGWGA
Sbjct: 131 LIGCPNQPNDFVVGGTASSQLFGMCESLWEPNLGPDDLFETTSQALINAFDRDAISGWGA 190
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY++E DKVT+R + TRMD
Sbjct: 191 VVYIIEKDKVTVRDLKTRMD 210
>gi|270008657|gb|EFA05105.1| hypothetical protein TcasGA2_TC015205 [Tribolium castaneum]
Length = 205
Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 86/200 (43%), Positives = 117/200 (58%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA+VAM G C +I D TIA K+ +M PHLY+ PGL D EK
Sbjct: 7 NGGAMVAMKGDKCVSIASDKRFGIQAQTIATNFQKIFEMGPHLYVGLPGLATDTQTVMEK 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E P+SP F+A+ S LY + P F+ PI+AG P + E ++ +D
Sbjct: 67 LRFRKNLYELKENRPMSPKVFSAMLSNMLYENRF-GPFFVEPIVAGLDPGTYEPYICNMD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC + DFV GG+A + + G+ ES W+P L P+ LFE SQ +I A +RD SGWGA
Sbjct: 126 LIGCPNQPNDFVVGGTASSQLFGMCESLWEPNLGPDDLFETTSQALINAFDRDAISGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY++E DKVT+R + TRMD
Sbjct: 186 VVYIIEKDKVTVRDLKTRMD 205
>gi|94468582|gb|ABF18140.1| 20S proteasome regulatory subunit beta type PSMB3/PUP3 [Aedes
aegypti]
Length = 205
Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 86/200 (43%), Positives = 121/200 (60%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG +VAM GKNC AI DH TIA KV +++PH+YL GL D + ++
Sbjct: 7 NGGCVVAMKGKNCVAIATDHRFGVQAQTIATDFEKVFEINPHMYLGLVGLQTDILTVHQR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E ++P+ FAA+ S LY ++ P FI P+IAG P + E F+ +D
Sbjct: 67 LLFRKNLYEVRENREMTPERFAAMLSNFLYEKRF-GPYFIEPVIAGLNPKTFEPFICNMD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC DFV G+ + G+ E+ W+P L PE+LFEV SQ ++ A +RD SGWGA
Sbjct: 126 LIGCPNMPNDFVVAGTCAEQLYGMCETLWKPDLEPEKLFEVISQALVNAFDRDAISGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
TVY+VE DK+T++K+ TRMD
Sbjct: 186 TVYIVEKDKLTVKKLKTRMD 205
>gi|380022329|ref|XP_003695002.1| PREDICTED: proteasome subunit beta type-3-like [Apis florea]
Length = 205
Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 119/201 (59%), Gaps = 3/201 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
+GGAI+AM GKNC AI D +Q +++ K+ +M HLYL PGL D E
Sbjct: 7 NGGAIIAMKGKNCVAIAADRRFGIQAQTITCDFQ-KIFEMGSHLYLSLPGLATDTQTVME 65
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
K+ R Y E I P FA++ S LY R+ P F+ PIIAG P++ E F+ +
Sbjct: 66 KLRFRLNLYELKENRKIHPKAFASMVSNLLYERRF-GPYFVEPIIAGLNPNTYEPFICNM 124
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWG 183
D+ GC + DFV GG+ + G+ ES ++P + P+ LFE SQ ++ AC+RD SGWG
Sbjct: 125 DLIGCISPSNDFVVGGTCSEQLYGMCESLYEPDMEPDDLFETISQALVNACDRDAISGWG 184
Query: 184 ATVYVVEPDKVTIRKIATRMD 204
A VY++E DK+T++ + TRMD
Sbjct: 185 AIVYIIEKDKITVKTLKTRMD 205
>gi|340724396|ref|XP_003400568.1| PREDICTED: proteasome subunit beta type-3-like [Bombus terrestris]
Length = 205
Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 87/201 (43%), Positives = 118/201 (58%), Gaps = 3/201 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
+GGAI+AM GKNC AI D +Q +++ K+ +M HLYL PGL D E
Sbjct: 7 NGGAIIAMKGKNCVAIAADRRFGIQAQTITCDFQ-KIFEMGSHLYLSLPGLATDTQTVME 65
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
K+ R Y E I P TFA++ S LY R+ P F+ P+IAG P + E F+ +
Sbjct: 66 KLRFRLNLYELKENRKIHPKTFASMVSNLLYERRF-GPYFVEPVIAGLSPVTYEPFICNV 124
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWG 183
D+ GC + DFV GG+ + G+ ES ++P + P+ LFE SQ ++ AC+RD SGWG
Sbjct: 125 DLIGCISPSNDFVVGGTCSEQLYGMCESLFEPDMEPDDLFETISQALVNACDRDAISGWG 184
Query: 184 ATVYVVEPDKVTIRKIATRMD 204
A VY++E DKVT R I TRMD
Sbjct: 185 AIVYIIEKDKVTTRTIKTRMD 205
>gi|328785087|ref|XP_624958.3| PREDICTED: proteasome subunit beta type-3-like [Apis mellifera]
Length = 205
Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 119/201 (59%), Gaps = 3/201 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
+GGAI+AM GKNC AI D +Q +++ K+ +M HLYL PGL D E
Sbjct: 7 NGGAIIAMKGKNCVAIAADRRFGIQAQTITCDFQ-KIFEMGSHLYLSLPGLATDTQTVME 65
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
K+ R Y E I P FA++ S LY R+ P F+ PIIAG P++ E F+ +
Sbjct: 66 KLRFRLNLYELKENRKIHPKAFASMVSNLLYERRF-GPYFVEPIIAGLNPNTYEPFICNM 124
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWG 183
D+ GC + DFV GG+ + G+ ES ++P + P+ LFE SQ ++ AC+RD SGWG
Sbjct: 125 DLIGCISPSNDFVVGGTCTEQLYGMCESLYEPDMEPDDLFETISQALVNACDRDAISGWG 184
Query: 184 ATVYVVEPDKVTIRKIATRMD 204
A VY++E DK+T++ + TRMD
Sbjct: 185 AIVYIIEKDKITVKTLKTRMD 205
>gi|350397681|ref|XP_003484954.1| PREDICTED: proteasome subunit beta type-3-like [Bombus impatiens]
Length = 205
Score = 176 bits (447), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 87/201 (43%), Positives = 118/201 (58%), Gaps = 3/201 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
+GGAI+AM GKNC AI D +Q +++ K+ +M HLYL PGL D E
Sbjct: 7 NGGAIIAMKGKNCVAIAADRRFGIQAQTITCDFQ-KIFEMGSHLYLSLPGLATDTQTVME 65
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
K+ R Y E I P TFA++ S LY R+ P F+ P+IAG P + E F+ +
Sbjct: 66 KLRFRLNLYELKENRKIHPKTFASMVSNLLYERRF-GPYFVEPVIAGLSPVTYEPFVCNV 124
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWG 183
D+ GC + DFV GG+ + G+ ES ++P + P+ LFE SQ ++ AC+RD SGWG
Sbjct: 125 DLIGCISPSDDFVVGGTCSEQLYGMCESLYEPDMEPDDLFETISQALVNACDRDAISGWG 184
Query: 184 ATVYVVEPDKVTIRKIATRMD 204
A VY++E DKVT R I TRMD
Sbjct: 185 AIVYIIEKDKVTTRTIKTRMD 205
>gi|157112534|ref|XP_001651824.1| proteasome subunit beta type [Aedes aegypti]
gi|108878045|gb|EAT42270.1| AAEL006174-PA [Aedes aegypti]
Length = 205
Score = 176 bits (445), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 85/200 (42%), Positives = 121/200 (60%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG +VAM GKNC AI DH TIA KV +++PH+YL GL D + ++
Sbjct: 7 NGGCVVAMKGKNCVAIATDHRFGVQAQTIATDFEKVFEINPHMYLGLVGLQTDILTVHQR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E ++P+ FAA+ S LY ++ P FI P+IAG P + E F+ +D
Sbjct: 67 LLFRKNLYEVRENREMTPERFAAMLSNFLYEKRF-GPYFIEPVIAGLNPKTFEPFICNMD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC DFV G+ + G+ E+ W+P L PE+LFEV SQ ++ A +RD SGWGA
Sbjct: 126 LIGCPNMPNDFVVAGTCAEQLYGMCETLWKPDLEPEKLFEVISQALVNAFDRDAISGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
TVY+VE +K+T++K+ TRMD
Sbjct: 186 TVYIVEKEKLTVKKLKTRMD 205
>gi|332375660|gb|AEE62971.1| unknown [Dendroctonus ponderosae]
Length = 205
Score = 175 bits (444), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 119/200 (59%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA++AM G+NC AI D T+A K+ +M HLY+ PGL D EK
Sbjct: 7 NGGAMLAMKGENCVAIAADRRFGVQAQTLATNFEKIFEMGSHLYVGLPGLATDTQTVMEK 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E +SP F+A+ S LY + P F+ P++AG P + E F+ +D
Sbjct: 67 LRFRKNIYELKENRAMSPRVFSAMVSHLLYENRF-GPYFVEPVVAGLEPKTFEPFICNMD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC + DFV GG+A + G+ E+ W+P L+P++LFE SQ +I A +RD SGWGA
Sbjct: 126 LIGCINQPKDFVVGGTASAQLYGMCEALWEPNLTPDELFETTSQALINAFDRDAVSGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
TVY++E DKVTI+ + TRMD
Sbjct: 186 TVYIIEKDKVTIKNLKTRMD 205
>gi|156539935|ref|XP_001599218.1| PREDICTED: proteasome subunit beta type-3-like isoform 1 [Nasonia
vitripennis]
Length = 205
Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 116/200 (58%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGAI+AM GKNC AI D TI+ K+++M PHLYL PGL D E+
Sbjct: 7 NGGAIIAMKGKNCVAIAADRRFGIQAQTISCNFQKIYEMGPHLYLGLPGLATDSQTVMER 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E I P TF ++ S LY R+ P F+ PI+AG P++ E F+ +D
Sbjct: 67 LRFRLNLYELKESRTIHPKTFGSMISNLLYERRF-GPYFVEPIVAGLDPETFEPFICNMD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC DFV GG+ + G+ E+ ++P L + LFE SQ ++ AC+RD SGWGA
Sbjct: 126 LIGCLNLPEDFVVGGTCSEQLYGMCEALYEPNLDADDLFETISQALVNACDRDAISGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
V+++E DK+T R I TRMD
Sbjct: 186 IVHIIEKDKITTRTIKTRMD 205
>gi|383854573|ref|XP_003702795.1| PREDICTED: proteasome subunit beta type-3-like [Megachile
rotundata]
Length = 205
Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 86/201 (42%), Positives = 117/201 (58%), Gaps = 3/201 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
+GGAI+AM GKNC AI D +Q +++ K+ +M PHLY+ PGL D E
Sbjct: 7 NGGAIIAMRGKNCVAIAADRRFGIQAQTITCDFQ-KIFEMGPHLYMSLPGLATDTQTVME 65
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
++ R Y E I P TFA++ S LY R+ P F+ PIIAG P + E ++ +
Sbjct: 66 RLRFRLNLYELKENRKIHPKTFASMVSNLLYERRF-GPYFVQPIIAGLSPVTFEPYICNM 124
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWG 183
D+ GC DFV GG+ + G+ ES ++P L + LFE SQ ++ AC+RD SGWG
Sbjct: 125 DVIGCINPSDDFVVGGTCSEQLYGMCESVFEPDLEADDLFETISQALVNACDRDAMSGWG 184
Query: 184 ATVYVVEPDKVTIRKIATRMD 204
A VY++E DKVT R I TRMD
Sbjct: 185 AVVYIIEKDKVTTRSIKTRMD 205
>gi|170030525|ref|XP_001843139.1| proteasome subunit beta type 3 [Culex quinquefasciatus]
gi|167867380|gb|EDS30763.1| proteasome subunit beta type 3 [Culex quinquefasciatus]
Length = 205
Score = 173 bits (438), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 120/200 (60%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG +VAM GKNC AI DH TIA K+ +++PH+YL GL D + ++
Sbjct: 7 NGGCVVAMKGKNCVAIATDHRFGVQAQTIATDFEKIFEINPHMYLGLVGLQTDILTVHQR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E ++P+ FAA+ S LY ++ P FI P+IAG P S E F+ +D
Sbjct: 67 LLFRKNLYEVRENRQMTPERFAAMLSNFLYEKRF-GPYFIEPVIAGLDPKSYEPFICNMD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC + DFV G+ + G+ E+ W+P L P LFEV SQ ++ A +RD SGWGA
Sbjct: 126 LIGCPNKPNDFVVAGTCAEQLYGMCETLWKPDLEPTALFEVISQALVNAFDRDAISGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
TVY++E +K+T++K+ TRMD
Sbjct: 186 TVYIIEKEKLTVKKLKTRMD 205
>gi|332017819|gb|EGI58480.1| Proteasome subunit beta type-3 [Acromyrmex echinatior]
Length = 238
Score = 172 bits (435), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 117/201 (58%), Gaps = 3/201 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
+GGA++AM GKNC AI D +Q +++ K+++M PHLY+ PGL D E
Sbjct: 40 NGGAVIAMKGKNCVAIAADRRFGIQAQTITCDFQ-KIYEMGPHLYVSLPGLATDTQTVME 98
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
++ R Y E I P TF A+ S LY R+ P F+ PI+AG P + E F+ +
Sbjct: 99 RLRFRLNLYELKENRKIHPKTFTAMISNLLYERRF-GPYFVEPIVAGLDPVTFEPFICNM 157
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWG 183
D+ G DFV GG+ + G+ ES ++P L PE+LFE SQ ++ A +RD SGWG
Sbjct: 158 DLIGSRNIAEDFVVGGTCTEQLYGMCESLYEPNLGPEELFETVSQALVNAFDRDAISGWG 217
Query: 184 ATVYVVEPDKVTIRKIATRMD 204
A VY++E DKVT R + TRMD
Sbjct: 218 AVVYIIEKDKVTKRTVKTRMD 238
>gi|312378864|gb|EFR25317.1| hypothetical protein AND_09469 [Anopheles darlingi]
Length = 205
Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 82/200 (41%), Positives = 120/200 (60%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG +VAM GKNC AI DH TIA KV +++PH+YL GL D + ++
Sbjct: 7 NGGCVVAMKGKNCVAIATDHRFGVQAQTIATDFEKVFEINPHMYLGLVGLQTDILTVYQR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E ++P+ FAA+ S LY ++ P FI P+IAG P + E F+ +D
Sbjct: 67 LIFRKNLYEVRENRQMTPERFAAMLSNFLYEKRF-GPYFIEPVIAGLDPKTYEPFICNMD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC DFV G+ + G+ E+ W+P L P+ LFEV SQ ++ A +RD SGWGA
Sbjct: 126 LIGCPNLPNDFVVAGTCAEQLYGMCETLWKPELEPDNLFEVISQALVNAFDRDAISGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
TVY++E +++T++K+ TRMD
Sbjct: 186 TVYIIEKERITVKKLKTRMD 205
>gi|322800746|gb|EFZ21650.1| hypothetical protein SINV_15015 [Solenopsis invicta]
Length = 218
Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 117/201 (58%), Gaps = 3/201 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
+GGA++AM GKNC AI D +Q + +++ K+++M PHLY+ PGL D E
Sbjct: 20 NGGAVIAMKGKNCVAIAADRRFGIQAQTIMCDFQ-KIYEMGPHLYVSLPGLATDTQTVME 78
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
++ R Y E I P TF A+ S LY ++ P F+ PI+AG P + E F+ +
Sbjct: 79 RLRFRLNLYELKENRKIHPKTFTAMISNLLYEKRF-GPYFVEPIVAGLDPVTFEPFICNM 137
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWG 183
D+ G DFV GG+ + G+ ES ++P L P +LFE SQ ++ A +RD SGWG
Sbjct: 138 DLIGSRNMAEDFVVGGTCTEQLYGMCESLYEPNLEPTELFETVSQALVNAFDRDAISGWG 197
Query: 184 ATVYVVEPDKVTIRKIATRMD 204
A VY++E DKVT R I TRMD
Sbjct: 198 AVVYIIEKDKVTKRTIKTRMD 218
>gi|58395630|ref|XP_321394.2| AGAP001697-PA [Anopheles gambiae str. PEST]
gi|347966404|ref|XP_003435908.1| AGAP001697-PB [Anopheles gambiae str. PEST]
gi|55233656|gb|EAA00889.2| AGAP001697-PA [Anopheles gambiae str. PEST]
gi|333470074|gb|EGK97505.1| AGAP001697-PB [Anopheles gambiae str. PEST]
Length = 205
Score = 169 bits (429), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 82/200 (41%), Positives = 119/200 (59%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG +VAM GKNC AI DH TIA KV +++PH+YL GL D + ++
Sbjct: 7 NGGCVVAMKGKNCVAIATDHRFGVQAQTIATDFEKVFEINPHMYLGLVGLQTDILTVYQR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E ++P+ FAA+ S LY ++ P FI P+IAG P + E F+ +D
Sbjct: 67 LLFRKNLYEVRENRQMTPERFAAMLSNFLYEKRF-GPYFIEPVIAGLDPKTYEPFICNMD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC DFV G+ + G+ E+ W+P L + LFEV SQ ++ A +RD SGWGA
Sbjct: 126 LIGCPNLPNDFVVAGTCAEQLYGMCETLWKPDLESDSLFEVISQALVNAFDRDAISGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
TVY++E +K+T++K+ TRMD
Sbjct: 186 TVYIIEKEKITVKKLKTRMD 205
>gi|358057136|dbj|GAA97043.1| hypothetical protein E5Q_03718 [Mixia osmundae IAM 14324]
Length = 204
Score = 169 bits (429), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 86/200 (43%), Positives = 115/200 (57%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG+++AM GK+C AI D L T+A + K+ ++P YL PGL +D + EK
Sbjct: 7 NGGSVIAMLGKDCVAIACDLRLGNQALTVACNQEKIFSITPTTYLGLPGLASDTLTVYEK 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ RT Y E I+P TF + S LY R+ P FI PIIAG D G F++T D
Sbjct: 67 LRHRTNMYAMREDRLITPTTFTHLVSSTLYERRF-GPYFIEPIIAGLEAD-GTPFVATTD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC DFV G+A + G+ E+ W+PGL E LFE Q ++ A +RD SGWGA
Sbjct: 125 LIGCINAAKDFVVAGTASEKLYGMSEALWEPGLDAEALFETIGQALLNAVDRDAYSGWGA 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VYV+E DKVT R + RMD
Sbjct: 185 VVYVIEKDKVTKRTLKARMD 204
>gi|307175918|gb|EFN65731.1| Proteasome subunit beta type-3 [Camponotus floridanus]
Length = 286
Score = 169 bits (428), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 116/201 (57%), Gaps = 3/201 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
+GGA++AM GKNC AI D +Q + +++ K+ +M PHL++ PGL D E
Sbjct: 88 NGGAVIAMKGKNCVAIAADRRFGIQAQTIMCDFQ-KIFEMEPHLFISLPGLATDTQTVME 146
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
++ R Y E I P TF A+ S LY ++ P F+ PIIAG P + E F+ +
Sbjct: 147 RLRFRLNLYELKENRKIHPKTFTAMVSNLLYEKRF-GPYFVEPIIAGLDPVTFEPFICNM 205
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWG 183
D+ G DFV GG+ + G+ ES ++P L P +LFE SQ ++ A +RD SGWG
Sbjct: 206 DLIGSRNMAEDFVVGGTCTEQLYGMCESLYEPDLEPNELFETISQALVNAFDRDAISGWG 265
Query: 184 ATVYVVEPDKVTIRKIATRMD 204
A VY++E DKVT R I TRMD
Sbjct: 266 AVVYIIEKDKVTKRTIKTRMD 286
>gi|156389516|ref|XP_001635037.1| predicted protein [Nematostella vectensis]
gi|156222126|gb|EDO42974.1| predicted protein [Nematostella vectensis]
Length = 205
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 115/201 (57%), Gaps = 3/201 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
+G AI+AM GKNC AI D L +Q +++ K+ QM L++ PGL D +
Sbjct: 7 NGAAIIAMVGKNCVAIAADRRLGIQAQTVSCDFQ-KIFQMGEKLFVGLPGLATDVQTISS 65
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
++ R Y E PI P TF ++ S LY R+ P F+ P+IAG P + E F+S++
Sbjct: 66 RLKFRLNLYELREGRPIKPKTFLSMVSNLLYERRF-GPYFVEPVIAGLDPKTNEPFISSM 124
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWG 183
D+ GC DFV G+ + G+ ES W P L P+ LFE SQ ++ A +RD SGWG
Sbjct: 125 DLIGCPMETKDFVVSGTCSEQMYGMCESLWVPDLEPDDLFETISQALLNAVDRDAVSGWG 184
Query: 184 ATVYVVEPDKVTIRKIATRMD 204
A V+V+EPDKVT R + RMD
Sbjct: 185 AVVHVIEPDKVTTRTLKARMD 205
>gi|321456221|gb|EFX67334.1| hypothetical protein DAPPUDRAFT_231791 [Daphnia pulex]
Length = 205
Score = 166 bits (420), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 113/200 (56%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG ++AM GK C AI D T+A ++ +M PHLY+ PGL D + E+
Sbjct: 7 NGGCVLAMKGKGCVAIASDRRFGVQTSTLAMDFQRIFEMGPHLYIGLPGLATDTLTVHER 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E I P TF+A+ S LY R+ P F+ P+IAG P + E F+S +D
Sbjct: 67 LRFRLNLYELRESRKIKPQTFSAMVSNLLYERRF-GPYFVEPVIAGLDPVTWEPFISAMD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC DFV G+ + G+ E+ W+P L P+ LFE SQ ++ A +RD SGWG
Sbjct: 126 LIGCPNMPEDFVVAGTCAEQLFGMCEALWEPNLEPDDLFETISQALMNAFDRDAISGWGG 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
V+++E DKVT R + TRMD
Sbjct: 186 VVHIIEKDKVTTRMLKTRMD 205
>gi|195444118|ref|XP_002069722.1| GK11424 [Drosophila willistoni]
gi|194165807|gb|EDW80708.1| GK11424 [Drosophila willistoni]
Length = 205
Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/200 (39%), Positives = 115/200 (57%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG +VAM GK C AI DH TI+ KV ++P ++L GL D + ++
Sbjct: 7 NGGCVVAMRGKECVAIATDHRFGVQAQTISTDFKKVFHIAPRMFLGLTGLQTDILTVRDR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E ++P F+A+ S LY + P F+ P++AG +P + E F+ +D
Sbjct: 67 LMFRKNLYETRENREMAPKPFSAMLSSFLYEHRF-GPYFVEPVVAGLHPKTLEPFICNMD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC DFV G+ + G+ E+ W+P L P+QLFEV SQ ++ A +RD SGWGA
Sbjct: 126 LIGCPNEPDDFVVAGTCAEQLYGMCETLWRPNLDPDQLFEVISQSMVNAFDRDAMSGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
TVYV+E DK+T R + TRMD
Sbjct: 186 TVYVIEKDKITERSLQTRMD 205
>gi|291225400|ref|XP_002732675.1| PREDICTED: proteasome beta 3 subunit-like [Saccoglossus
kowalevskii]
Length = 205
Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 82/204 (40%), Positives = 115/204 (56%), Gaps = 2/204 (0%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQ 60
MS N G A+VAM GK+C AI D T++ K+ +M P LYL PGL D
Sbjct: 4 MSYN-GSAVVAMKGKDCVAIAADRRFGIQAQTVSMDFQKIFEMGPRLYLGLPGLATDVQT 62
Query: 61 FAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFL 120
+ ++ R Y E I P TF ++ S LY R+ P F+ PIIAG PD+ E F+
Sbjct: 63 VSNRLKFRLNLYTLRENRKIKPKTFMSMVSNLLYERRF-GPYFVEPIIAGLEPDTYEPFI 121
Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKS 180
+LD+ GC DFV G++ + G+ ES W P ++ E+LFE SQ ++ A +RD +
Sbjct: 122 CSLDLIGCPMVPEDFVVAGTSSEQLYGMCESLWLPDMNSEELFETVSQALLNAVDRDALA 181
Query: 181 GWGATVYVVEPDKVTIRKIATRMD 204
GWGA V+++E DK+T R + RMD
Sbjct: 182 GWGAVVHIIEKDKITTRTLKARMD 205
>gi|345497131|ref|XP_003427914.1| PREDICTED: proteasome subunit beta type-3-like isoform 2 [Nasonia
vitripennis]
Length = 192
Score = 163 bits (412), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 109/193 (56%), Gaps = 1/193 (0%)
Query: 12 MAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTAN 71
M GKNC AI D TI+ K+++M PHLYL PGL D E++ R
Sbjct: 1 MKGKNCVAIAADRRFGIQAQTISCNFQKIYEMGPHLYLGLPGLATDSQTVMERLRFRLNL 60
Query: 72 YVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETR 131
Y E I P TF ++ S LY R+ P F+ PI+AG P++ E F+ +D+ GC
Sbjct: 61 YELKESRTIHPKTFGSMISNLLYERRF-GPYFVEPIVAGLDPETFEPFICNMDLIGCLNL 119
Query: 132 KTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEP 191
DFV GG+ + G+ E+ ++P L + LFE SQ ++ AC+RD SGWGA V+++E
Sbjct: 120 PEDFVVGGTCSEQLYGMCEALYEPNLDADDLFETISQALVNACDRDAISGWGAIVHIIEK 179
Query: 192 DKVTIRKIATRMD 204
DK+T R I TRMD
Sbjct: 180 DKITTRTIKTRMD 192
>gi|289742193|gb|ADD19844.1| 20S proteasome regulatory subunit beta type PSMB3/PUP3 [Glossina
morsitans morsitans]
Length = 205
Score = 162 bits (411), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 117/200 (58%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG +VAM GK+C AIG D TI+ +KV QM+P ++L GL D + ++
Sbjct: 7 NGGCVVAMRGKDCVAIGTDRRFGVQAQTISTDFDKVFQMNPRMFLGLVGLQTDILTVKDR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R + Y E + P+ FAA+ S LY + P FI P+IAG P++ E F+ +D
Sbjct: 67 LHFRKSLYETRENREMQPERFAAMLSSFLYEHRF-GPFFIEPVIAGLDPETMEPFICNMD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC DFV G+ + G+ E+ W+P + +LFE SQ +I A +RD SGWGA
Sbjct: 126 LIGCPNIPDDFVVAGTCYEQLYGMCETLWKPDMKAPELFETISQAMINAFDRDAISGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
TVYV+E DK+TI+ + TRMD
Sbjct: 186 TVYVIEQDKITIKTLKTRMD 205
>gi|443717932|gb|ELU08769.1| hypothetical protein CAPTEDRAFT_228896 [Capitella teleta]
Length = 205
Score = 162 bits (411), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 79/201 (39%), Positives = 118/201 (58%), Gaps = 3/201 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
+G AIVAMAGK+C AI D +QG T+A K+++ P+LY+ PGL D A+
Sbjct: 7 NGSAIVAMAGKDCVAIAADRRFGIQGQ-TVALDFQKIYEYGPNLYMGLPGLATDVQTVAQ 65
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
++ R Y E + P T ++ S LY R+ P F+ P+IAG P + + F+++L
Sbjct: 66 RLKFRVNMYELRENRKMKPQTMLSVVSNLLYERRF-GPYFVEPVIAGLDPKTSKPFIASL 124
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWG 183
D+ GC DFV G+ + G+ E+ W+P +SP+ LFE SQ ++ +C+RD SGWG
Sbjct: 125 DLIGCPMITEDFVINGTCAEQLYGMCEALWEPDMSPDVLFEKVSQAMMSSCDRDAISGWG 184
Query: 184 ATVYVVEPDKVTIRKIATRMD 204
V+++E DKVT R + RMD
Sbjct: 185 VVVHIIEKDKVTTRTLKARMD 205
>gi|388583046|gb|EIM23349.1| N-terminal nucleophile aminohydrolase [Wallemia sebi CBS 633.66]
Length = 205
Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 116/200 (58%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG++VAM GK C AI D L + ++A KV ++ L++ PGL +D + +
Sbjct: 7 NGGSVVAMRGKKCVAIAGDLRLGNRNMSLAANFEKVFPITQKLFVGLPGLASDVLTLRDT 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
RT Y E I P+TFA + S LY R+ SP F+ P++AG P++GE F++ D
Sbjct: 67 FRFRTNMYKLKEGREIEPNTFAHLVSSTLYERRW-SPYFVEPVVAGLDPNNGEPFIAATD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC DFV G+A + + G+ ES W+P L E LFE SQ ++ +RD SGWGA
Sbjct: 126 LIGCLNFAKDFVVSGTASDKMFGMAESLWEPDLEAEDLFETISQTLLNGVDRDALSGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
V+V+ P+K+ R + +RMD
Sbjct: 186 VVHVITPEKMITRSLKSRMD 205
>gi|114052162|ref|NP_001040460.1| proteasome beta 3 subunit [Bombyx mori]
gi|95102980|gb|ABF51431.1| proteasome beta 3 subunit [Bombyx mori]
Length = 205
Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 113/200 (56%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA+VAM G++C AI D T++ KV QM P LY+ PGL D ++
Sbjct: 7 NGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E + P TF+A+ S LY R+ P FI P+IAG P + ++ +D
Sbjct: 67 LKFRMNLYELKENRMMRPKTFSAMLSNLLYERRF-GPYFIEPVIAGLDPYDNQPYVCNMD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC DFV G+ + G+ E+ W+P L P++LFE SQ ++ A +RD SGWGA
Sbjct: 126 LIGCPNEPEDFVVSGTCSEQLYGMCEALWEPNLKPDELFETISQALVNAADRDAISGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY++E DK+T + + TRMD
Sbjct: 186 VVYIIEKDKITEKHVKTRMD 205
>gi|195111548|ref|XP_002000340.1| GI10178 [Drosophila mojavensis]
gi|193916934|gb|EDW15801.1| GI10178 [Drosophila mojavensis]
Length = 205
Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 115/200 (57%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG +VAM GK+C AI DH TI+ KV ++P ++L GL D + ++
Sbjct: 7 NGGCVVAMRGKDCVAIATDHRFGVQAQTISTDFKKVFHIAPRMFLGLTGLQTDILTVRDR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E ++P F+A+ S LY + P FI P++AG P + + F+ +D
Sbjct: 67 LMFRKNIYETKENREMAPKPFSAMLSSFLYEHRF-GPYFIEPVVAGLDPKTMKPFICNMD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC DFV G+ + G+ E+ W+P L P+QLFEV SQ ++ A +RD SGWGA
Sbjct: 126 LIGCPNEPDDFVVAGTCAEQLYGMCETLWRPDLEPDQLFEVISQSMVNAFDRDAMSGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
TVY++E DK+T R + TRMD
Sbjct: 186 TVYIIEKDKITERSLKTRMD 205
>gi|353239440|emb|CCA71352.1| probable PUP3-20S proteasome subunit beta3 [Piriformospora indica
DSM 11827]
Length = 205
Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 79/200 (39%), Positives = 113/200 (56%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG++VAMAGK+C AI D L TIA KV ++ + L GL D + ++
Sbjct: 7 NGGSVVAMAGKDCVAIASDLRLGNQALTIATNFEKVFPVTERIMLGMAGLATDVLTLRDR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
R Y E+ I P+TFA + S LY R+ P FI P+IAG + + F+++ D
Sbjct: 67 FRFRVNMYTIKEEREIEPETFAHLVSSTLYERRF-GPYFIEPVIAGLGKGTNKPFIASTD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC DFV G+A + + G+ ES W+P L PE LFE SQ ++ A +RD SGWGA
Sbjct: 126 VIGCINFAKDFVVAGTATDKLFGVAESLWEPDLEPEDLFETISQTLMNAVDRDAFSGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
V+++ P+KV R + RMD
Sbjct: 186 VVHIITPEKVITRHLKARMD 205
>gi|195395370|ref|XP_002056309.1| GJ10880 [Drosophila virilis]
gi|194143018|gb|EDW59421.1| GJ10880 [Drosophila virilis]
Length = 205
Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 115/200 (57%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG +VAM GK+C AI DH TI+ KV ++P ++L GL D + ++
Sbjct: 7 NGGCVVAMRGKDCVAIATDHRFGVQAQTISTDFKKVFHIAPRMFLGLTGLQTDILTVRDR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E ++P F+A+ S LY + P FI P++AG P + + F+ +D
Sbjct: 67 LMFRKNIYETKENREMAPKPFSAMLSSFLYEHRF-GPYFIEPVVAGLDPKTMKPFICNMD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC DFV G+ + G+ E+ W+P L P+QLFEV +Q ++ A +RD SGWGA
Sbjct: 126 LIGCPNEPDDFVVAGTCAEQLYGMCETLWRPDLEPDQLFEVIAQSMVNAFDRDAMSGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
TVY++E DK+T R + TRMD
Sbjct: 186 TVYIIEKDKITERTLKTRMD 205
>gi|307195647|gb|EFN77489.1| Proteasome subunit beta type-3 [Harpegnathos saltator]
Length = 192
Score = 160 bits (404), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 80/194 (41%), Positives = 110/194 (56%), Gaps = 3/194 (1%)
Query: 12 MAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTA 70
M GKNC AI D +Q + +++ K+++M HLY+ PGL +D E++ R
Sbjct: 1 MKGKNCVAIAADRRFGIQAQTIMCDFQ-KIYEMGSHLYVSLPGLASDTQTVMERLRFRLN 59
Query: 71 NYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCET 130
Y E I P TF A+ S LY R+ P F+ PI+AG P + E F+ +D+ G
Sbjct: 60 LYELKENRKIHPKTFTAMISNLLYERRF-GPYFVEPIVAGLDPVTSEPFICNMDLIGSRN 118
Query: 131 RKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVE 190
DFV GG+ + G+ ES ++P L PE LFE SQ ++ A +RD SGWGA VY++E
Sbjct: 119 IAEDFVVGGTCTEQLYGMCESLYEPDLGPEDLFETISQALVNAFDRDAISGWGAVVYIIE 178
Query: 191 PDKVTIRKIATRMD 204
DKVT R I TRMD
Sbjct: 179 KDKVTKRTIKTRMD 192
>gi|21355629|ref|NP_649858.1| proteasome beta3 subunit [Drosophila melanogaster]
gi|194903499|ref|XP_001980880.1| GG17403 [Drosophila erecta]
gi|195330532|ref|XP_002031957.1| GM26292 [Drosophila sechellia]
gi|195499293|ref|XP_002096887.1| GE24806 [Drosophila yakuba]
gi|195572401|ref|XP_002104184.1| GD20828 [Drosophila simulans]
gi|17380236|sp|Q9XYN7.1|PSB3_DROME RecName: Full=Proteasome subunit beta type-3; AltName: Full=20S
proteasome subunit beta-3
gi|4559288|gb|AAD22968.1|AF116898_1 20S proteasome beta3 subunit [Drosophila melanogaster]
gi|7299121|gb|AAF54320.1| proteasome beta3 subunit [Drosophila melanogaster]
gi|20151995|gb|AAM11357.1| LD16402p [Drosophila melanogaster]
gi|116806244|emb|CAL26545.1| CG11981 [Drosophila melanogaster]
gi|116806246|emb|CAL26546.1| CG11981 [Drosophila melanogaster]
gi|116806248|emb|CAL26547.1| CG11981 [Drosophila melanogaster]
gi|116806250|emb|CAL26548.1| CG11981 [Drosophila melanogaster]
gi|116806252|emb|CAL26549.1| CG11981 [Drosophila melanogaster]
gi|116806254|emb|CAL26550.1| CG11981 [Drosophila melanogaster]
gi|116806256|emb|CAL26551.1| CG11981 [Drosophila melanogaster]
gi|116806258|emb|CAL26552.1| CG11981 [Drosophila melanogaster]
gi|116806260|emb|CAL26553.1| CG11981 [Drosophila simulans]
gi|190652583|gb|EDV49838.1| GG17403 [Drosophila erecta]
gi|194120900|gb|EDW42943.1| GM26292 [Drosophila sechellia]
gi|194182988|gb|EDW96599.1| GE24806 [Drosophila yakuba]
gi|194200111|gb|EDX13687.1| GD20828 [Drosophila simulans]
gi|220942808|gb|ACL83947.1| Prosbeta3-PA [synthetic construct]
gi|223967619|emb|CAR93540.1| CG11981-PA [Drosophila melanogaster]
gi|223967621|emb|CAR93541.1| CG11981-PA [Drosophila melanogaster]
gi|223967623|emb|CAR93542.1| CG11981-PA [Drosophila melanogaster]
gi|223967625|emb|CAR93543.1| CG11981-PA [Drosophila melanogaster]
gi|223967627|emb|CAR93544.1| CG11981-PA [Drosophila melanogaster]
gi|223967629|emb|CAR93545.1| CG11981-PA [Drosophila melanogaster]
gi|223967631|emb|CAR93546.1| CG11981-PA [Drosophila melanogaster]
gi|223967633|emb|CAR93547.1| CG11981-PA [Drosophila melanogaster]
gi|223967635|emb|CAR93548.1| CG11981-PA [Drosophila melanogaster]
gi|223967637|emb|CAR93549.1| CG11981-PA [Drosophila melanogaster]
gi|223967639|emb|CAR93550.1| CG11981-PA [Drosophila melanogaster]
Length = 205
Score = 160 bits (404), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 113/200 (56%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG +VAM GK+C AI DH TI+ KV + P ++L GL D + ++
Sbjct: 7 NGGCVVAMRGKDCVAIATDHRFGIQAQTISTDFKKVFHIGPRMFLGLTGLQTDILTVRDR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E + P F+A+ S LY + P FI P++AG P + E F+ +D
Sbjct: 67 LMFRKNLYETRENREMCPKPFSAMMSSFLYEHRF-GPYFIEPVVAGLDPKTMEPFICNMD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC DFV G+ + G+ E+ W+P L P+QLFEV +Q ++ A +RD SGWGA
Sbjct: 126 LIGCPNAPDDFVVAGTCAEQLYGMCETLWKPDLEPDQLFEVIAQSIVNAFDRDAMSGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
TVY++E DK+T R + TRMD
Sbjct: 186 TVYIIEKDKITERTLKTRMD 205
>gi|427787219|gb|JAA59061.1| Putative 20s proteasome regulatory subunit beta type psmb3/pup3
[Rhipicephalus pulchellus]
Length = 205
Score = 159 bits (403), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 115/204 (56%), Gaps = 2/204 (0%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQ 60
MS N GG +VAM GK C AI D L TIA ++ +M P LY PGL D
Sbjct: 4 MSYN-GGVVVAMKGKECVAIAADRRLGARGHTIALDFERIFEMGPKLYCGLPGLATDTQT 62
Query: 61 FAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFL 120
A+++ R Y E I+P T ++ S LY R+ P F+ PI+AG P + E ++
Sbjct: 63 VAQRLKFRINLYELREGRLITPKTLGSVISNLLYERRF-GPYFVQPIVAGLDPVTNEPYI 121
Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKS 180
+D+ GC TDFV G+ + G+ E+ W+P + P++LFE +Q ++ A +RD+ S
Sbjct: 122 CVMDLIGCIDEPTDFVVSGTCEEQCYGMCETLWEPDMGPDELFEATAQALMNAFDRDSAS 181
Query: 181 GWGATVYVVEPDKVTIRKIATRMD 204
GWG V+++E DKVT + + TRMD
Sbjct: 182 GWGGVVHIIEKDKVTTKYLKTRMD 205
>gi|393233198|gb|EJD40772.1| 20S proteasome subunit beta 3 [Auricularia delicata TFB-10046 SS5]
Length = 207
Score = 159 bits (403), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 113/202 (55%), Gaps = 3/202 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG+++AM GKNC AI D L T+A KV ++ +YL PGL D E+
Sbjct: 7 NGGSVIAMVGKNCVAIASDLRLGNQALTVATNFEKVFPVTDRIYLGLPGLATDVATLRER 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFY-PDSG-EVFLST 122
R Y E+ I P+TFA + S LY R+ P FI P+IAG P G + F++
Sbjct: 67 FRYRVNMYTIKEEREIEPETFAHLVSSTLYERRF-GPYFIEPVIAGLTSPARGSKPFIAA 125
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGW 182
D+ GC DFV G+A + + G+ E W+P L PE+LFE SQ ++ A +RD SGW
Sbjct: 126 TDLIGCLNFAKDFVVCGTASSKLFGVAEGLWEPDLEPEELFETISQTLLNAVDRDAFSGW 185
Query: 183 GATVYVVEPDKVTIRKIATRMD 204
GA V+V+ P+KV R + RMD
Sbjct: 186 GAIVHVITPEKVVTRTLKGRMD 207
>gi|194744578|ref|XP_001954770.1| GF18436 [Drosophila ananassae]
gi|190627807|gb|EDV43331.1| GF18436 [Drosophila ananassae]
Length = 205
Score = 159 bits (402), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 115/200 (57%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG +VAM GK+C AI DH TI+ KV ++P ++L GL D + ++
Sbjct: 7 NGGCVVAMRGKDCVAIATDHRFGVQAQTISTDFKKVFHIAPRMFLGLTGLQTDILTVRDR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E ++P F+A+ S LY + P FI P++AG P + + F+ +D
Sbjct: 67 LMFRKNLYETRENREMAPKPFSAMLSSFLYEHRF-GPYFIEPVVAGLDPHTLKPFICNMD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC DFV G+ + G+ E+ W+P L P+QLFEV +Q ++ A +RD SGWGA
Sbjct: 126 LIGCPNEPVDFVVAGTCAEQLYGMCETLWRPDLEPDQLFEVIAQSMMNAFDRDAMSGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
TVY++E DK+T R + TRMD
Sbjct: 186 TVYIIEKDKITERSLKTRMD 205
>gi|391339684|ref|XP_003744177.1| PREDICTED: proteasome subunit beta type-3-like [Metaseiulus
occidentalis]
Length = 205
Score = 159 bits (402), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 118/201 (58%), Gaps = 3/201 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
+GG ++AM G C AI D L V+G ++E +V +M P L++ PGL D + ++
Sbjct: 7 NGGIVIAMKGDGCVAIATDRRLGVEGRTVSIDFE-RVFEMGPRLFVGLPGLATDTITVSQ 65
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
K+ Y E ++P TFA + S LY ++ P FI P++AG P + E +++ +
Sbjct: 66 KLRFDMNLYELQENRQMTPKTFATLLSGTLYEKRF-GPYFIEPVVAGMDPKTNEPYVACM 124
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWG 183
D+ G T DFV G+A+ G+ E+ W+PG+ P++LFE SQ V+ A +RD SGWG
Sbjct: 125 DLIGSTTETVDFVVSGTAEEEAYGMCETLWRPGMKPDELFECISQCVLNAMDRDAISGWG 184
Query: 184 ATVYVVEPDKVTIRKIATRMD 204
V+V+E DKVT R + TRMD
Sbjct: 185 VKVHVMEKDKVTTRYLKTRMD 205
>gi|269972971|emb|CBE67030.1| CG11981-PA [Drosophila atripex]
gi|269973424|emb|CBE66639.1| CG11981-PA [Drosophila ananassae]
gi|269973426|emb|CBE66640.1| CG11981-PA [Drosophila ananassae]
gi|269973428|emb|CBE66641.1| CG11981-PA [Drosophila ananassae]
gi|269973430|emb|CBE66642.1| CG11981-PA [Drosophila ananassae]
gi|269973432|emb|CBE66643.1| CG11981-PA [Drosophila ananassae]
gi|269973434|emb|CBE66644.1| CG11981-PA [Drosophila ananassae]
gi|269973436|emb|CBE66645.1| CG11981-PA [Drosophila ananassae]
gi|269973438|emb|CBE66646.1| CG11981-PA [Drosophila ananassae]
gi|269973440|emb|CBE66647.1| CG11981-PA [Drosophila ananassae]
gi|269973442|emb|CBE66648.1| CG11981-PA [Drosophila ananassae]
gi|269973444|emb|CBE66649.1| CG11981-PA [Drosophila ananassae]
gi|269973446|emb|CBE66650.1| CG11981-PA [Drosophila ananassae]
Length = 205
Score = 159 bits (402), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 115/200 (57%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG +VAM GK+C AI DH TI+ KV ++P ++L GL D + ++
Sbjct: 7 NGGCVVAMRGKDCVAIATDHRFGVQAQTISTDFKKVFHIAPRMFLGLTGLQTDILTVRDR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E ++P F+A+ S LY + P FI P++AG P + + F+ +D
Sbjct: 67 LMFRKNLYETRENREMAPKPFSAMLSSFLYEHRF-GPYFIEPVVAGLDPHTLKPFICNMD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC DFV G+ + G+ E+ W+P L P+QLFEV +Q ++ A +RD SGWGA
Sbjct: 126 LIGCPNEPDDFVVAGTCAEQLYGMCETLWRPDLEPDQLFEVIAQSMMNAFDRDAMSGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
TVY++E DK+T R + TRMD
Sbjct: 186 TVYIIEKDKITERSLKTRMD 205
>gi|125778116|ref|XP_001359838.1| GA11308 [Drosophila pseudoobscura pseudoobscura]
gi|195157484|ref|XP_002019626.1| GL12496 [Drosophila persimilis]
gi|54639588|gb|EAL28990.1| GA11308 [Drosophila pseudoobscura pseudoobscura]
gi|194116217|gb|EDW38260.1| GL12496 [Drosophila persimilis]
Length = 205
Score = 159 bits (401), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 115/200 (57%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG +VAM GK+C AI DH TI+ KV ++P ++L GL D + ++
Sbjct: 7 NGGCVVAMRGKDCVAIATDHRFGVQAQTISTDFKKVFHIAPRMFLGLTGLQTDILTVRDR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E ++P F+A+ S LY + P FI P++AG P + + F+ +D
Sbjct: 67 LMFRKNLYETRENREMAPKPFSAMLSSFLYEHRF-GPYFIEPVVAGLDPKTLKPFVCNMD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC DFV G+ + G+ E+ W+P L P+QLFEV +Q ++ A +RD SGWGA
Sbjct: 126 LIGCPNEPDDFVVAGTCAEQLYGMCETLWKPDLQPDQLFEVIAQSMMNAFDRDAMSGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
TVY++E DK+T R + TRMD
Sbjct: 186 TVYIIEKDKITERSLKTRMD 205
>gi|328715258|ref|XP_001950836.2| PREDICTED: proteasome subunit beta type-3-like [Acyrthosiphon
pisum]
Length = 205
Score = 159 bits (401), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 116/206 (56%), Gaps = 3/206 (1%)
Query: 1 MSLND--GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADG 58
MS+ D GGA++ M GK+C AI D T++ KV Q++PH Y+ PGL D
Sbjct: 1 MSIMDYNGGALIGMKGKDCVAIATDKRFGIQAQTVSLDFTKVFQINPHTYMGFPGLATDI 60
Query: 59 MQFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEV 118
EK+ R Y E ISP A++ S LY + SP F+ P+I + E
Sbjct: 61 FTVYEKIMFRKRLYELKENRKISPKALASLVSNLLYENRF-SPFFVEPMIVALDEVTLEP 119
Query: 119 FLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDT 178
++ +D+ GC + +FV GG++ + + G+ E+ W+P + +QLFE SQ ++ AC RD
Sbjct: 120 YMCDMDLIGCVNKSDNFVVGGTSSSQLYGLCEALWEPDMEEDQLFETISQALVSACNRDA 179
Query: 179 KSGWGATVYVVEPDKVTIRKIATRMD 204
SGWGA VY+++ DK+ +R I TRMD
Sbjct: 180 ISGWGAKVYIIKKDKIIVRDIKTRMD 205
>gi|195038067|ref|XP_001990482.1| GH18224 [Drosophila grimshawi]
gi|193894678|gb|EDV93544.1| GH18224 [Drosophila grimshawi]
Length = 205
Score = 158 bits (400), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 115/200 (57%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG +VAM GK+C AI DH TI+ KV ++P ++L GL D + ++
Sbjct: 7 NGGCVVAMRGKDCVAIATDHRFGVQAQTISTDFKKVFHIAPRMFLGLTGLQTDILTVRDR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E ++P F+A+ S LY + P FI P++AG P + + F+ +D
Sbjct: 67 LMFRKNIYETKENREMAPKPFSAMLSSFLYEHRF-GPYFIEPVVAGLDPKTMKPFICNMD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC DFV G+ + G+ E+ W+P L P+QLFEV +Q ++ A +RD SGWGA
Sbjct: 126 LIGCPNEPDDFVVAGTCAEQLYGMCETLWRPDLEPDQLFEVIAQSMVNAFDRDAMSGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
TV+++E DK+T R + TRMD
Sbjct: 186 TVFIIEKDKITERSLKTRMD 205
>gi|340923906|gb|EGS18809.1| hypothetical protein CTHT_0054190 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 206
Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 111/200 (55%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA VAM GKNC AI D L T++ K+ Q H++L GL D A+
Sbjct: 8 NGGACVAMVGKNCVAIACDLRLGLQALTVSNNFPKIFQYGDHVFLGLTGLATDVQTVADI 67
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ Y E+ I+P TFA + S LY R+ P F++P++AG P +GE F+ D
Sbjct: 68 FRYKVNLYRLREERHIAPRTFANLVSSSLYERRF-GPWFVSPVVAGLDPKTGEPFICGFD 126
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
GC DF+ G+A + G+ ES W+P L PE+LFE SQ ++ A +RD SGWGA
Sbjct: 127 SIGCIDFAKDFIVSGTATEQLFGMCESLWEPDLGPEELFETISQALLNAVDRDALSGWGA 186
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY++E DKVT R + R D
Sbjct: 187 HVYIIEKDKVTKRLLKGRQD 206
>gi|346469345|gb|AEO34517.1| hypothetical protein [Amblyomma maculatum]
Length = 205
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/204 (37%), Positives = 115/204 (56%), Gaps = 2/204 (0%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQ 60
MS N GG ++AM GK+C AI D L TIA ++ +M P LY PGL D
Sbjct: 4 MSYN-GGVVLAMKGKDCVAIAADRRLGARGHTIALDFQRIFEMGPKLYCGLPGLATDTQT 62
Query: 61 FAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFL 120
A+++ R Y E I+P T ++ S LY R+ P F+ P++AG P + E ++
Sbjct: 63 VAQRLKFRINLYELREGRKITPKTLGSVISNLLYERRF-GPYFVQPVVAGLDPVTNEPYI 121
Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKS 180
+D+ GC DFV G+ + G+ E+ W+P + P++LFE +Q ++ A +RD+ S
Sbjct: 122 CVMDLIGCIDSPEDFVVAGTCEEQCYGMCETLWEPDMGPDELFEATAQALMNAFDRDSSS 181
Query: 181 GWGATVYVVEPDKVTIRKIATRMD 204
GWG V+V+E DKVT + + TRMD
Sbjct: 182 GWGGVVHVIEKDKVTTKYLKTRMD 205
>gi|260809319|ref|XP_002599453.1| hypothetical protein BRAFLDRAFT_281217 [Branchiostoma floridae]
gi|229284732|gb|EEN55465.1| hypothetical protein BRAFLDRAFT_281217 [Branchiostoma floridae]
Length = 205
Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/204 (39%), Positives = 112/204 (54%), Gaps = 2/204 (0%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQ 60
MS N G AI+AM GK+C AI D T++ K+ QM L+L PGL D
Sbjct: 4 MSYN-GAAIIAMVGKDCVAIAADRRFGVQAQTVSMDFQKIFQMGDRLFLGLPGLATDVQT 62
Query: 61 FAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFL 120
+ +M R Y E + P TF ++ S LY R+ P F+ P++AG P + E F+
Sbjct: 63 VSNRMKFRLNLYELREARQVKPKTFLSMVSNLLYERRF-GPYFVEPVVAGLDPKTFEPFI 121
Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKS 180
++ D+ GC DFV G+ + G+ ES W+P L P+ LFE SQ ++ A +RD S
Sbjct: 122 ASCDLIGCPMIPEDFVVSGTCSEQMYGMCESLWEPNLEPDDLFETISQALLNAADRDAVS 181
Query: 181 GWGATVYVVEPDKVTIRKIATRMD 204
GWGA V+V+E DKVT R + RMD
Sbjct: 182 GWGAVVHVIEKDKVTTRTLKGRMD 205
>gi|442750507|gb|JAA67413.1| Putative 20s proteasome regulatory subunit beta type psmb3/pup3
[Ixodes ricinus]
Length = 205
Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 80/204 (39%), Positives = 114/204 (55%), Gaps = 2/204 (0%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQ 60
MS N GG ++AM GK C AI D L TIA ++ +M P LY GL D
Sbjct: 4 MSYN-GGVVIAMKGKECIAIAADRRLGARGHTIALDFQRIFEMGPKLYCGLSGLATDVQT 62
Query: 61 FAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFL 120
A+++ R Y E I P TF+++ S LY R+ P F +IAG P + E ++
Sbjct: 63 VAQRLKFRINMYELREGRRIKPKTFSSVVSNILYERRF-GPYFTEALIAGLDPITNEPYI 121
Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKS 180
++ D+ GC + DFV G+ + G+ E+ W+P L P++LFEV SQ ++ A +RD S
Sbjct: 122 ASTDLIGCISEPEDFVVSGTCEEQCFGMCEALWEPDLGPDELFEVISQALVNAFDRDASS 181
Query: 181 GWGATVYVVEPDKVTIRKIATRMD 204
GWG V++VE DKVT + + TRMD
Sbjct: 182 GWGGVVHIVEKDKVTTKYLKTRMD 205
>gi|240849169|ref|NP_001155482.1| proteasome beta 3 subunit-like [Acyrthosiphon pisum]
gi|239792821|dbj|BAH72708.1| ACYPI002587 [Acyrthosiphon pisum]
Length = 205
Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 116/206 (56%), Gaps = 3/206 (1%)
Query: 1 MSLND--GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADG 58
MS+ D GGA++ M GK+C AI D T++ KV Q++PH ++ PGL D
Sbjct: 1 MSIMDYNGGALIGMKGKDCVAIATDKRFGIQAQTVSLDFTKVFQINPHTFMGFPGLATDI 60
Query: 59 MQFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEV 118
EK+ R Y E ISP A++ S LY + SP F+ P+I + E
Sbjct: 61 FTVYEKIMFRKRLYELKENRKISPKALASLVSNLLYENRF-SPFFVEPMIVALDEVTLEP 119
Query: 119 FLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDT 178
++ +D+ GC + +FV GG++ + + G+ E+ W+P + +QLFE SQ ++ AC RD
Sbjct: 120 YMCDMDLIGCVNKSDNFVVGGTSSSQLYGLCEALWEPDMEEDQLFETISQALVSACNRDA 179
Query: 179 KSGWGATVYVVEPDKVTIRKIATRMD 204
SGWGA VY+++ DK+ +R I TRMD
Sbjct: 180 ISGWGAKVYIIKKDKIIVRDIKTRMD 205
>gi|167522269|ref|XP_001745472.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775821|gb|EDQ89443.1| predicted protein [Monosiga brevicollis MX1]
Length = 211
Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 117/200 (58%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G A+VAM GK C AI D L T+A K+ QM P L++ PGL D F+++
Sbjct: 14 NGSAMVAMTGKGCIAIAADRRLGAQAQTVATDFQKLFQMGPTLFVGLPGLATDVQTFSQR 73
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+T + Y E+ I P + S LY ++ P FI P+IAG D G+ ++++ D
Sbjct: 74 LTFKLKLYKLREERDIEPKALTNLISSMLYEKRF-GPYFIEPLIAGLDKD-GQPYVASTD 131
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC TDFV GG++ + + G+ ES ++P + P++LFEV SQ ++ A +RD +GWG
Sbjct: 132 VIGCPMETTDFVVGGTSSDQLFGMCESLYKPNMEPDELFEVVSQALLNAQDRDALAGWGG 191
Query: 185 TVYVVEPDKVTIRKIATRMD 204
V++VE DKVT R + RMD
Sbjct: 192 VVHIVEKDKVTTRTLRGRMD 211
>gi|402225130|gb|EJU05191.1| 20S proteasome subunit beta 3 [Dacryopinax sp. DJM-731 SS1]
Length = 205
Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 79/200 (39%), Positives = 110/200 (55%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG++VAM GKNC AI D L T+A KV ++ LY GL D + E+
Sbjct: 7 NGGSVVAMKGKNCVAIASDLRLGNQAMTVATNFEKVFPVTDSLYCGLAGLATDVITLRER 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
R Y E+ I P TFA + S LY R+ P F+ P+IAG +GE F++ D
Sbjct: 67 FRYRVNMYTIKEERQIEPATFAQLVSSTLYERRF-GPYFVEPVIAGISKKTGEPFIAAAD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC DFV G+A + + G+ E W+P ++ E LFE SQ ++ A +RD SGWGA
Sbjct: 126 LIGCLNFAKDFVVCGTASDKLFGVAEGLWEPDMAAEDLFETISQTLMNAVDRDAFSGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
V+V+ P+KV R + RMD
Sbjct: 186 IVHVITPEKVISRTLKARMD 205
>gi|392577300|gb|EIW70429.1| hypothetical protein TREMEDRAFT_68051 [Tremella mesenterica DSM
1558]
Length = 210
Score = 156 bits (395), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 82/206 (39%), Positives = 113/206 (54%), Gaps = 8/206 (3%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG++VAM GK+C AI D L Q +A +KV ++ LY PGL D E+
Sbjct: 7 NGGSVVAMIGKDCVAIASDLRLGQQSVGVAMNFDKVFPVNDKLYYGLPGLATDVYTLREQ 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEV------ 118
+ R Y E+ I+P TF + S LY ++ P FI P++AG P E+
Sbjct: 67 LRFRVNMYRMKEEREITPKTFTHLVSSTLYEKRF-GPYFIEPVVAGL-PSPTELDPHPKP 124
Query: 119 FLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDT 178
F+ST+D GC T DF G+A N + G+ E W+P L PE LFE SQ ++ A +RD
Sbjct: 125 FISTMDTIGCITTPKDFAVAGTASNKLFGVAEGLWEPDLEPEDLFETISQTLLNAVDRDA 184
Query: 179 KSGWGATVYVVEPDKVTIRKIATRMD 204
SGWGA V+V+ DKV R++ RMD
Sbjct: 185 LSGWGAIVHVITHDKVITRQLRARMD 210
>gi|239788580|dbj|BAH70963.1| ACYPI007526 [Acyrthosiphon pisum]
Length = 205
Score = 156 bits (394), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 115/205 (56%), Gaps = 3/205 (1%)
Query: 1 MSLND--GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADG 58
MS+ D GGA++ M GK+C AI D T++ KV Q++PH Y+ PGL D
Sbjct: 1 MSIMDYNGGALIGMKGKDCVAIATDKRFGIQAQTVSLDFTKVFQINPHTYMGFPGLATDI 60
Query: 59 MQFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEV 118
EK+ R Y E ISP A++ S LY + SP F+ P+I + E
Sbjct: 61 FTVYEKIMFRKRLYELKENRKISPKALASLVSNLLYENRF-SPFFVEPMIVALDEVTLEP 119
Query: 119 FLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDT 178
++ +D+ GC + +FV GG++ + + G+ E+ W+P + +QLFE SQ ++ AC RD
Sbjct: 120 YMCDMDLIGCVNKSDNFVVGGTSSSQLYGLCEALWEPDMEEDQLFETISQALVSACNRDA 179
Query: 179 KSGWGATVYVVEPDKVTIRKIATRM 203
SGWGA VY+++ DK+ +R I TRM
Sbjct: 180 ISGWGAKVYIIKKDKIIVRDIKTRM 204
>gi|328864212|gb|AEB53189.1| proteasome subunit beta type 3 [Holothuria glaberrima]
Length = 202
Score = 155 bits (393), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 80/204 (39%), Positives = 110/204 (53%), Gaps = 2/204 (0%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQ 60
MS N G AIVAM GK+C AI D T++ K+ +M+P LY+ GL D
Sbjct: 1 MSYN-GSAIVAMRGKDCVAIASDRRFGIQAQTVSMECQKIFEMAPRLYIGLSGLATDVQT 59
Query: 61 FAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFL 120
+ ++ R Y E I P TF ++ + LY R+ P F P+IAG P + E F+
Sbjct: 60 VSNRLKFRLNLYTLRENRDIKPKTFMSMVANLLYERRF-GPYFTEPVIAGLDPKTFEPFI 118
Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKS 180
LD+ GC DFV G+ + G+ ES W+P L P+ LFE SQ ++ A +RD S
Sbjct: 119 CNLDLIGCPMITEDFVVAGTCTEQLYGMCESLWKPDLEPDDLFETISQALLNAVDRDAVS 178
Query: 181 GWGATVYVVEPDKVTIRKIATRMD 204
GWG V+V+E DK+T R + RMD
Sbjct: 179 GWGVIVHVIEKDKITTRTVKARMD 202
>gi|242018983|ref|XP_002429948.1| proteasome subunit beta type, putative [Pediculus humanus corporis]
gi|212514994|gb|EEB17210.1| proteasome subunit beta type, putative [Pediculus humanus corporis]
Length = 190
Score = 155 bits (392), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 74/186 (39%), Positives = 109/186 (58%), Gaps = 1/186 (0%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GGA+VA+ GKNC AI D G TI+ K+ +M PHLY+ PGL D +
Sbjct: 6 HNGGAVVAVTGKNCVAIASDRRFGVGAQTISCNFQKIFEMGPHLYVGLPGLATDTQTVYQ 65
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
++ R Y E I+P TF+ + S LY R+ P F+ P++AG P +G+ F+ +
Sbjct: 66 RLRFRLNLYELKEGRKIAPKTFSHMMSNLLYERRF-GPYFVEPVVAGLDPTTGKPFVCNM 124
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWG 183
D+ GC DFV G+ + G+ E+ W+P L P++LFEV SQ ++ AC+RD SGWG
Sbjct: 125 DLIGCPNMPEDFVVAGTCSEQLYGMCETLWEPNLEPDELFEVVSQALVNACDRDAISGWG 184
Query: 184 ATVYVV 189
A V+V+
Sbjct: 185 AIVHVM 190
>gi|388852079|emb|CCF54255.1| probable PUP3-20S proteasome subunit beta3 [Ustilago hordei]
Length = 204
Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 112/200 (56%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG++VA GKNC I D L Q T+A +KV +++ Y+ PGL +D EK
Sbjct: 7 NGGSVVAAKGKNCVVIASDLRLGQQAMTVACNFDKVFRVTEKTYIGLPGLASDVTTLREK 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
R Y E+ I P+ FA + S LY R+ P FI P+IAG + E F++ D
Sbjct: 67 FRYRVNMYKMKEERDIEPEVFAQLVSSTLYERRF-GPYFIEPVIAGINSKN-EPFIAASD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC DFV G+A + + G+ E W+P L PE+LFE SQ+++ A ERD SGWGA
Sbjct: 125 VVGCLNFAKDFVVSGTAGDKLFGMAEGLWEPDLGPEELFETVSQILLGALERDALSGWGA 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
V ++ P+KV R + RMD
Sbjct: 185 IVRIITPEKVIERTLKARMD 204
>gi|406701627|gb|EKD04743.1| proteasome subunit beta type 3 [Trichosporon asahii var. asahii CBS
8904]
Length = 210
Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 81/205 (39%), Positives = 111/205 (54%), Gaps = 6/205 (2%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG++VAM GK+C AI D L Q +A KV ++ LY PGL D E+
Sbjct: 7 NGGSVVAMVGKDCVAIAGDLRLGQQATGVAMNFEKVFPVNDTLYFGLPGLATDVFTLKEQ 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSG-----EVF 119
M R Y E+ I+P TF + S LY ++ P FI P++AG P + + F
Sbjct: 67 MRFRVNMYRMKEEREITPVTFTNLLSSTLYEKRF-GPYFIEPVVAGIAPATEANPNPQPF 125
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ST+D GC T DF G+A + G E W+P L PE LFE SQV++ A +RD
Sbjct: 126 ISTMDTIGCITTPKDFAVAGTATEKLYGTAEGLWEPNLEPEDLFETISQVLLNAVDRDAL 185
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SGWGA V+++ DKV R + +RMD
Sbjct: 186 SGWGAVVHIITKDKVVTRMLRSRMD 210
>gi|323508047|emb|CBQ67918.1| probable PUP3-20S proteasome subunit beta3 [Sporisorium reilianum
SRZ2]
Length = 204
Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 111/200 (55%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG++VA GKNC I D L Q T+A +KV +++ Y+ PGL +D E+
Sbjct: 7 NGGSVVAAKGKNCVVIASDLRLGQQAMTVACNFDKVFRVTEKTYVGLPGLASDVATLKER 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
R Y E+ I P+ FA + S LY R+ P FI P+IAG E F++ D
Sbjct: 67 FRYRVNMYKMKEERDIEPEIFAHLVSSTLYERRF-GPYFIEPVIAGI-NSKNEPFIAASD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC DFV G+A + + G+ E W+P L PE+LFE SQ+++ A ERD SGWGA
Sbjct: 125 VVGCLNFAKDFVVSGTAADKLFGMAEGLWEPDLGPEELFETVSQILLGALERDALSGWGA 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
V V+ P+KV R + RMD
Sbjct: 185 IVRVITPNKVIERTLKARMD 204
>gi|401881470|gb|EJT45770.1| proteasome subunit beta type 3 [Trichosporon asahii var. asahii CBS
2479]
Length = 207
Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 81/205 (39%), Positives = 111/205 (54%), Gaps = 6/205 (2%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG++VAM GK+C AI D L Q +A KV ++ LY PGL D E+
Sbjct: 4 NGGSVVAMVGKDCVAIAGDLRLGQQATGVAMNFEKVFPVNDTLYFGLPGLATDVFTLKEQ 63
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSG-----EVF 119
M R Y E+ I+P TF + S LY ++ P FI P++AG P + + F
Sbjct: 64 MRFRVNMYRMKEEREITPVTFTNLLSSTLYEKRF-GPYFIEPVVAGIAPATEANPNPQPF 122
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ST+D GC T DF G+A + G E W+P L PE LFE SQV++ A +RD
Sbjct: 123 ISTMDTIGCITTPKDFAVAGTATEKLYGTAEGLWEPNLEPEDLFETISQVLLNAVDRDAL 182
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SGWGA V+++ DKV R + +RMD
Sbjct: 183 SGWGAVVHIITKDKVVTRMLRSRMD 207
>gi|198423327|ref|XP_002125759.1| PREDICTED: similar to LOC496005 protein [Ciona intestinalis]
Length = 205
Score = 154 bits (388), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 80/205 (39%), Positives = 117/205 (57%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVD-HLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA+VAM GKNC AI D +Q ++E K+ MS LY+ GL D
Sbjct: 4 MSYN-GGAVVAMKGKNCVAIASDLRFGIQAQTVGMDFE-KIFPMSERLYIGLTGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
++++ + Y E ISP TF ++ S LY ++ P FI P+IAG P + E F
Sbjct: 62 TVSQRLQFQLKLYELRENRQISPKTFLSVVSNLLYEKRF-GPYFIEPVIAGLDPKTKEPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+++ D+ GC DFV G+ + G+ E+ W+P + P+ LFE SQ ++ + +RD
Sbjct: 121 IASCDLIGCPMEPEDFVVTGTCAIQMYGMCEALWRPDMEPDDLFECVSQALLNSVDRDAG 180
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SGWGA V+++E DKVT R++ RMD
Sbjct: 181 SGWGAVVHIIEADKVTTRRLKARMD 205
>gi|171696000|ref|XP_001912924.1| hypothetical protein [Podospora anserina S mat+]
gi|170948242|emb|CAP60406.1| unnamed protein product [Podospora anserina S mat+]
Length = 203
Score = 153 bits (387), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 112/202 (55%), Gaps = 1/202 (0%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
L DGGA VAM GK+C AI D L T++ K+ Q +++L GL D +
Sbjct: 3 LPDGGACVAMVGKDCVAIACDLRLGLQALTVSNNFPKIFQYGDNVFLGLTGLATDVATVS 62
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLST 122
+ + Y E+ I+P TFA + S LY R+ P F++P++AG P +G+ F+
Sbjct: 63 DLFRYKVNMYRLREERQIAPRTFANLVSSSLYERRF-GPWFVSPVVAGLDPKTGQPFICG 121
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGW 182
D GC DF+ G+A + G+ ES W+P L P+QLFE SQ ++ A +RD SGW
Sbjct: 122 FDSIGCIDFAKDFIVSGTATEQLFGMCESLWEPNLGPDQLFETISQSLLNAVDRDALSGW 181
Query: 183 GATVYVVEPDKVTIRKIATRMD 204
GA VY++E DKVT R + R D
Sbjct: 182 GAHVYIIEKDKVTKRLLKGRQD 203
>gi|432957515|ref|XP_004085833.1| PREDICTED: proteasome subunit beta type-3-like [Oryzias latipes]
Length = 205
Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 81/205 (39%), Positives = 112/205 (54%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GKNC AI D +Q +++ K+ M LY+ GL D
Sbjct: 4 MSYN-GGAVMAMRGKNCVAIAADRRFGIQAQMVTTDFQ-KIFPMGERLYIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
++++ R Y E I P TF ++ S LY R+ P +I P+IAG P S E F
Sbjct: 62 TVSQRLKFRLNLYELKEGRQIKPKTFMSMVSNLLYERRF-GPYYIEPVIAGLDPKSFEPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + G+ ES W+P L PE LFE SQ ++ A +RD
Sbjct: 121 ICSLDLIGCPMVTEDFVVSGTCSEQMYGMCESLWEPDLEPEDLFETISQAMLNAVDRDAV 180
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G V+V+E DK+T R + RMD
Sbjct: 181 SGMGVVVHVIEKDKITTRTLKARMD 205
>gi|255731824|ref|XP_002550836.1| proteasome component PUP3 [Candida tropicalis MYA-3404]
gi|240131845|gb|EER31404.1| proteasome component PUP3 [Candida tropicalis MYA-3404]
Length = 206
Score = 152 bits (385), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 109/200 (54%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA VAM GK C AI D L Q ++ K+ ++SP YL GL +D + E
Sbjct: 8 NGGAAVAMIGKECIAIASDLRLGQQSLGVSNNFEKIFEISPKTYLGLTGLASDVLTLKEL 67
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+T Y E I P T A + S LY R+ P F++PI+AG + + F+ D
Sbjct: 68 FRFKTNLYKLREDHSIEPSTLANLISSSLYERRF-GPWFVSPIVAGLDSKTNKPFICGFD 126
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
GC DF+ G+A + + G+ ES ++P L PE+LFE SQ ++ A +RD SGWGA
Sbjct: 127 SIGCIDYSHDFIVSGTASDQLYGMCESLYEPNLEPEELFETISQALLNAVDRDALSGWGA 186
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY++ DKVT R + TR D
Sbjct: 187 VVYIITKDKVTKRVLKTRQD 206
>gi|326426453|gb|EGD72023.1| proteasome subunit beta type-3 [Salpingoeca sp. ATCC 50818]
Length = 204
Score = 152 bits (384), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 115/200 (57%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G A+VAM GK C AI D L T++ KV QM P L++ PGL D + +++
Sbjct: 7 NGSAVVAMTGKECVAIAADRRLGAQAQTVSTDFQKVFQMGPKLFVGLPGLGTDAITVSQR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E+ I P T + S LY R+ P F+ P++AG + ++++ D
Sbjct: 67 LKFRLNMYTLREERDIEPKTMINLVSSFLYERRF-GPYFVEPVVAGL-DSKNQPYVASTD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC +DFV GG++ + G+ ES ++P ++P+ LFE SQ ++ A +RD +GWGA
Sbjct: 125 LIGCPMETSDFVVGGTSSEQLYGMCESLYKPDMAPDDLFETISQALMNAVDRDCLAGWGA 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
V+++E DK+T R++ RMD
Sbjct: 185 IVHIIEKDKITTRELKARMD 204
>gi|83769195|dbj|BAE59332.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 203
Score = 152 bits (384), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 111/204 (54%), Gaps = 1/204 (0%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQ 60
MS ++GGA VAM GK+C AI D L T++ K+ SP +L GL D
Sbjct: 1 MSAHNGGACVAMVGKDCVAIACDLRLGMQALTVSNNFPKIFNYSPSTFLGLTGLATDVST 60
Query: 61 FAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFL 120
++ + Y E+ I+P T A + S LY R+ P F++P++AG +G+ F+
Sbjct: 61 VSDLFRYKVNMYRLREERNIAPQTLANLVSSSLYERRF-GPFFVSPVVAGINSTTGKPFI 119
Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKS 180
D GC DF+ G+A + + G ES W+P L+PE LFE SQ ++ A +RD S
Sbjct: 120 CGFDSIGCIDFAKDFIVSGTASDQLFGTCESLWEPDLAPEDLFETISQALLSAVDRDALS 179
Query: 181 GWGATVYVVEPDKVTIRKIATRMD 204
GWGA VY++E DKVT R + R D
Sbjct: 180 GWGAQVYIIEKDKVTKRLLKGRQD 203
>gi|390346277|ref|XP_780413.3| PREDICTED: proteasome subunit beta type-3-like [Strongylocentrotus
purpuratus]
Length = 205
Score = 152 bits (384), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 110/204 (53%), Gaps = 2/204 (0%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQ 60
MS N G A+VAM GK+C I D T++ K+ M P LYL GL D
Sbjct: 4 MSYN-GSAVVAMIGKDCVGIASDRRFGVQAQTVSMNAQKIFTMGPRLYLGLSGLATDITT 62
Query: 61 FAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFL 120
+ ++ R Y E + P+TF ++ S LY R+ P FI P+IAG P + + F+
Sbjct: 63 VSNRLKFRLNLYTLRENRDVKPETFMSMVSNLLYERRF-GPYFIEPVIAGLDPKTYKPFI 121
Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKS 180
LD+ GC DFV G+ + G+ ES W P L+P+ LFE SQ ++ A +RD +
Sbjct: 122 CNLDLIGCPMFTDDFVVAGTCTEQLYGMCESVWVPDLAPDDLFETLSQGLLNAVDRDALA 181
Query: 181 GWGATVYVVEPDKVTIRKIATRMD 204
GWG V+++E DKVT R++ RMD
Sbjct: 182 GWGVVVHIIEKDKVTTREVKARMD 205
>gi|315045460|ref|XP_003172105.1| proteasome component PUP3 [Arthroderma gypseum CBS 118893]
gi|311342491|gb|EFR01694.1| proteasome component PUP3 [Arthroderma gypseum CBS 118893]
Length = 212
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 111/202 (54%), Gaps = 1/202 (0%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
L+DGGA VAM GK+C AI D L T++ K+ +P YL GL D +
Sbjct: 12 LSDGGACVAMVGKDCVAIACDLRLGLQALTVSNEFPKIFNYAPSTYLGLTGLATDVNTVS 71
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLST 122
+ + + Y E+ ISP T A + S LY ++ P F++P++AG +G+ F+
Sbjct: 72 QLLRYKVNLYRLREERNISPQTLANLVSSSLYEKRF-GPFFVSPVLAGINHTTGKPFICG 130
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGW 182
D GC +F+ G+A + + G ES W+P L PE LFE SQ ++ A +RD SGW
Sbjct: 131 FDSIGCIDFAKNFIVSGTASDQLYGTCESLWEPDLEPEDLFETISQALLNAVDRDALSGW 190
Query: 183 GATVYVVEPDKVTIRKIATRMD 204
GA VY++E DKVT RK+ R D
Sbjct: 191 GAYVYIIEKDKVTKRKLKGRQD 212
>gi|335345796|gb|AEH41478.1| proteasome component Pup3 [Endocarpon pusillum]
Length = 206
Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 108/200 (54%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA VAM GK C AI D L T++ K+ Q +P YL GL D ++
Sbjct: 8 NGGACVAMVGKGCVAIACDLRLGLQSLTVSNNFPKIFQYAPSCYLGLTGLATDVSTVSDL 67
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
R Y E+ ISP T A + S LY R+ P F++P++AG +G+ F+ D
Sbjct: 68 FRYRVNMYRLREERNISPQTLANLVSSSLYERRF-GPYFVSPVLAGINHTTGKPFICGFD 126
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
GC DF+ GG+A + + G E W+P L P++LFE SQ ++ A +RD SGWGA
Sbjct: 127 SIGCIDFAKDFIVGGTASDQLFGTCEGLWEPDLEPDELFETVSQALLNAVDRDALSGWGA 186
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY++E DKVT R + R D
Sbjct: 187 HVYIIEKDKVTKRLLKGRQD 206
>gi|452837699|gb|EME39641.1| hypothetical protein DOTSEDRAFT_75329 [Dothistroma septosporum
NZE10]
Length = 206
Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 107/200 (53%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA VAM GK+C AI D L T++ KV P LYL GL D +E
Sbjct: 8 NGGACVAMVGKDCVAIACDLRLGLQALTVSNNFPKVFNYGPSLYLGLTGLATDVSSVSEL 67
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ Y E+ I+P TFA + S LY R+ P FI+P++AG +G+ F+ D
Sbjct: 68 FRYKVNMYRLREERDIAPQTFANLVSSSLYERRF-GPWFISPVVAGINHTTGKPFICGFD 126
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
GC DF+ G+A + + G E W+P L PE LFE SQ ++ A +RD SGWGA
Sbjct: 127 SIGCIDFAKDFIVSGTASDQLFGTCEGLWEPDLGPEDLFETISQALLNAVDRDALSGWGA 186
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY++E DKVT R + R D
Sbjct: 187 HVYIIEKDKVTKRLLKGRQD 206
>gi|348521013|ref|XP_003448021.1| PREDICTED: proteasome subunit beta type-3-like [Oreochromis
niloticus]
Length = 202
Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 80/205 (39%), Positives = 112/205 (54%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GKNC AI D +Q +++ K+ M LY+ GL D
Sbjct: 1 MSYN-GGAVMAMRGKNCVAIAADRRFGIQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 58
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
A+++ R Y E I P TF ++ S LY R+ P +I P+IAG P + E F
Sbjct: 59 TVAQRLKFRLNLYELKEGRQIKPKTFMSMVSNLLYERRF-GPYYIEPVIAGLDPKTFEPF 117
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + G+ ES W+P + P+ LFE SQ ++ A +RD
Sbjct: 118 ICSLDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPDMEPDDLFETISQAMLNAVDRDAV 177
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G V+VVE DK+T R + RMD
Sbjct: 178 SGMGVVVHVVEKDKITTRTLKARMD 202
>gi|449295365|gb|EMC91387.1| hypothetical protein BAUCODRAFT_39558 [Baudoinia compniacensis UAMH
10762]
Length = 206
Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/200 (39%), Positives = 107/200 (53%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA VAM GKNC AI D L T++ K+ Q SP +L GL D +E
Sbjct: 8 NGGACVAMRGKNCVAIACDLRLGLQSLTVSNNFPKIFQYSPTAFLGLTGLATDVSTVSEL 67
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ Y E+ I+P TFA + S LY R+ P F++P++AG SG F+ D
Sbjct: 68 FRYKVNMYRLREERDIAPKTFAQLVSSSLYERRF-GPWFVSPVVAGIDGKSGAPFICGFD 126
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
GC DF+ G+A + + G E W+P L P+ LFE SQ ++ A +RD SGWGA
Sbjct: 127 SIGCIDYAADFIVSGTASDQLFGTCEGLWEPDLEPDDLFETISQALLNAVDRDALSGWGA 186
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY++E DKVT R + R D
Sbjct: 187 HVYIIEKDKVTKRLLKGRQD 206
>gi|409083718|gb|EKM84075.1| hypothetical protein AGABI1DRAFT_110664 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426201222|gb|EKV51145.1| 20S proteasome subunit beta 3 [Agaricus bisporus var. bisporus H97]
Length = 208
Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 112/203 (55%), Gaps = 4/203 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG+++AMAGK+C AI D L +I+ +V ++ +Y+ PGL D E+
Sbjct: 7 NGGSVIAMAGKDCVAIASDLRLGNQMLSISSNFQRVFPVTDRIYIGLPGLATDVTTLRER 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGF--YPDSG-EVFLS 121
LR Y E+ I P+ F + S LY + P FI+P++AG P G + F++
Sbjct: 67 FRLRVNMYTIKEEREIEPEAFTHLVSSTLYEHRF-GPYFISPVVAGISKTPTGGIKPFIA 125
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
D+ GC DFV G+A + + G+ E W+P L PE LFE SQ ++ A +RD SG
Sbjct: 126 ATDLIGCINFAKDFVVSGTASSKLFGVAEGLWEPDLGPEDLFETISQTLLNAVDRDAFSG 185
Query: 182 WGATVYVVEPDKVTIRKIATRMD 204
WGA V+V+ D+V RK+ RMD
Sbjct: 186 WGAVVHVITKDQVITRKLKARMD 208
>gi|320590790|gb|EFX03233.1| proteasome component [Grosmannia clavigera kw1407]
Length = 206
Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 110/200 (55%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA VAM GK+C AI D L T++ KV Q +++L GL D ++
Sbjct: 8 NGGACVAMVGKDCVAIACDLRLGMQALTVSNNFPKVFQYGDNVFLGLTGLATDVNTVSDL 67
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ Y E+ I+P TFA + S LY R+ P F++P++AG P +G+ F+ D
Sbjct: 68 FRYKVNLYRLREERHIAPRTFANLVSSSLYERRF-GPFFVSPVVAGLEPKTGQPFICGFD 126
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
GC DF+ G+A + G+ ES W+P L P+ LFE SQ ++ A +RD SGWGA
Sbjct: 127 SIGCIDFARDFIVSGTASEQLFGMCESLWEPDLGPDALFETISQALLNAVDRDALSGWGA 186
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY++E DKVT R + R D
Sbjct: 187 HVYIIEKDKVTKRLLKGRQD 206
>gi|242217207|ref|XP_002474405.1| predicted protein [Postia placenta Mad-698-R]
gi|220726447|gb|EED80396.1| predicted protein [Postia placenta Mad-698-R]
Length = 208
Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 110/203 (54%), Gaps = 4/203 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG+++AM GK+C AI D L IA K+ M+ +YL PGL D E+
Sbjct: 7 NGGSVIAMVGKDCVAIASDLRLGNQALGIASDFEKIFPMTDRVYLGLPGLATDVTTLREQ 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGF--YPDSG-EVFLS 121
R Y E+ I P+TFA + S LY R+ P FI P++AG P+ G + F++
Sbjct: 67 FRYRLNMYTIKEEREIEPETFAHLVSSTLYERRF-GPYFIEPVMAGLQRLPNGGYKPFIA 125
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
D+ GC DFV G+A + + G+ E W+P L PE LFE +Q ++ A +RD SG
Sbjct: 126 ATDLIGCINFAKDFVVAGTASSKLFGVAEGLWEPDLEPEDLFETIAQTLLNAVDRDAYSG 185
Query: 182 WGATVYVVEPDKVTIRKIATRMD 204
WGA V+V+ DK R + RMD
Sbjct: 186 WGAVVHVITKDKAIKRVLKGRMD 208
>gi|392883970|gb|AFM90817.1| proteasome (prosome, macropain) subunit, beta type, 3
[Callorhinchus milii]
Length = 205
Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 113/205 (55%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N G AI+AM GKNC AI D +Q +++ K++ M LY+ GL D
Sbjct: 4 MSYN-GAAIMAMKGKNCVAIASDRRFGIQAQLVTTDFQ-KIYPMGERLYIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
++++ R Y E I P TF ++ S LY R+ P +++P+IAG +P + E F
Sbjct: 62 TVSQRLKFRLNLYELKEGRQIKPKTFMSMVSNLLYERRF-GPYYVDPVIAGLHPKTFEPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + G+ ES W+P L E LFE SQ ++ A +RD
Sbjct: 121 ICSLDVIGCPMETDDFVVSGTCSEQMYGMCESLWEPDLESEDLFETISQAMLNAVDRDAI 180
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G V+V+E DK+T R + RMD
Sbjct: 181 SGMGVIVHVIEKDKITTRTLKARMD 205
>gi|302662910|ref|XP_003023105.1| hypothetical protein TRV_02795 [Trichophyton verrucosum HKI 0517]
gi|291187083|gb|EFE42487.1| hypothetical protein TRV_02795 [Trichophyton verrucosum HKI 0517]
Length = 212
Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 110/202 (54%), Gaps = 1/202 (0%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
L DGGA VAM GK+C AI D L T++ K+ +P YL GL D +
Sbjct: 12 LPDGGACVAMVGKDCVAIACDLRLGLQALTVSNEFPKIFNYAPSTYLGLTGLATDVNTVS 71
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLST 122
+ + + Y E+ ISP T A + S LY ++ P F++P++AG +G+ F+
Sbjct: 72 QLLRYKVNLYRLREERNISPQTLANLVSSSLYEKRF-GPFFVSPVLAGINHTTGKPFICG 130
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGW 182
D GC +F+ G+A + + G ES W+P L PE LFE SQ ++ A +RD SGW
Sbjct: 131 FDSIGCIDFAKNFIVSGTASDQLYGTCESLWEPDLEPEDLFETISQALLNAVDRDALSGW 190
Query: 183 GATVYVVEPDKVTIRKIATRMD 204
GA VY++E DKVT RK+ R D
Sbjct: 191 GAYVYIIEKDKVTKRKLKGRQD 212
>gi|449545308|gb|EMD36279.1| 20S proteasome subunit beta 3 [Ceriporiopsis subvermispora B]
Length = 208
Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 78/207 (37%), Positives = 114/207 (55%), Gaps = 5/207 (2%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQ 60
M +N GG+++AM GK+C AI D L I+ K+ M+ +Y+ PGL D
Sbjct: 4 MQMN-GGSVIAMVGKDCVAIASDLRLGNQSLGISSKFEKIFPMTDRVYVGLPGLATDVTT 62
Query: 61 FAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPD-SGEV- 118
++ R Y E+ I P+TFA + S LY ++ P FI P+IAG SG++
Sbjct: 63 LHQQFRYRLNMYTIKEEREIEPETFAHLVSSTLYEKRF-GPYFIEPVIAGLQKTPSGDLK 121
Query: 119 -FLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERD 177
+++ D+ GC DFV G+A + + G+ E W+P L PE LFE +Q ++ A +RD
Sbjct: 122 PYIAATDLIGCLNFAKDFVVAGTASDKLFGVAEGLWEPDLEPEDLFETIAQTLLNAVDRD 181
Query: 178 TKSGWGATVYVVEPDKVTIRKIATRMD 204
SGWGA VYV+ DKV R++ RMD
Sbjct: 182 AYSGWGAVVYVLTKDKVIKRELKGRMD 208
>gi|302501602|ref|XP_003012793.1| hypothetical protein ARB_01044 [Arthroderma benhamiae CBS 112371]
gi|291176353|gb|EFE32153.1| hypothetical protein ARB_01044 [Arthroderma benhamiae CBS 112371]
Length = 212
Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 110/202 (54%), Gaps = 1/202 (0%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
L DGGA VAM GK+C AI D L T++ K+ +P YL GL D +
Sbjct: 12 LPDGGACVAMVGKDCVAIACDLRLGLQALTVSNEFPKIFNYAPSTYLGLTGLATDVNTVS 71
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLST 122
+ + + Y E+ ISP T A + S LY ++ P F++P++AG +G+ F+
Sbjct: 72 QLLRYKVNLYRLREERNISPQTLANLVSSSLYEKRF-GPFFVSPVLAGINHTTGKPFICG 130
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGW 182
D GC +F+ G+A + + G ES W+P L PE LFE SQ ++ A +RD SGW
Sbjct: 131 FDSIGCIDFAKNFIVSGTASDQLYGTCESLWEPDLEPEDLFETISQALLNAVDRDALSGW 190
Query: 183 GATVYVVEPDKVTIRKIATRMD 204
GA VY++E DKVT RK+ R D
Sbjct: 191 GAYVYIIEKDKVTKRKLKGRQD 212
>gi|410917408|ref|XP_003972178.1| PREDICTED: proteasome subunit beta type-3-like [Takifugu rubripes]
Length = 205
Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 79/205 (38%), Positives = 111/205 (54%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GKNC AI D +Q +++ K+ M LY+ GL D
Sbjct: 4 MSYN-GGAVMAMRGKNCVAIAADRRFGIQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
++++ R Y E I P TF ++ S LY R+ P +I P+IAG P + E F
Sbjct: 62 TVSQRLKFRLNLYELKEGRQIKPKTFMSMVSNLLYERRF-GPYYIEPVIAGLDPKTFEPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + G+ ES W P + PE LFE SQ ++ A +RD
Sbjct: 121 ICSLDLIGCPMETEDFVVSGTCSEQMYGMCESLWGPDMEPEDLFETISQAMLNAVDRDAV 180
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G V+V+E DK+T R + RMD
Sbjct: 181 SGMGVVVHVIEKDKITTRTLKARMD 205
>gi|387914628|gb|AFK10923.1| proteasome (prosome, macropain) subunit, beta type, 3
[Callorhinchus milii]
Length = 205
Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 113/205 (55%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N G AI+AM GKNC AI D +Q +++ K++ M LY+ GL D
Sbjct: 4 MSYN-GAAIMAMKGKNCVAIASDRRFGIQAQLVTTDFQ-KIYPMGERLYIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
++++ R Y E I P TF ++ S LY R+ P +++P+IAG +P + E F
Sbjct: 62 TVSQRLKFRLNLYELKEGRQIKPKTFMSMVSNLLYERRF-GPYYVDPVIAGLHPKTFEPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + G+ ES W+P L E LFE SQ ++ A +RD
Sbjct: 121 ICSLDVIGCPMETDDFVVSGTCSEQMYGMCESLWEPDLESEALFETISQAMLNAVDRDAI 180
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G V+V+E DK+T R + RMD
Sbjct: 181 SGMGVIVHVIEKDKITTRTLKARMD 205
>gi|148229244|ref|NP_001088741.1| proteasome (prosome, macropain) subunit, beta type, 3 [Xenopus
laevis]
gi|56270462|gb|AAH87395.1| LOC496005 protein [Xenopus laevis]
Length = 205
Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 79/205 (38%), Positives = 112/205 (54%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGAI+AM GK+C AI D VQ +++ K+ M LY+ GL D
Sbjct: 4 MSYN-GGAIMAMKGKDCVAIAADRRFGVQAQMVTTDFQ-KIFPMGERLYIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
A+++ R Y E I P TF ++ + LY R+ P +I P+IAG P + + F
Sbjct: 62 TVAQRLKFRLNLYELKEGRQIKPKTFMSMVANLLYERRF-GPYYIEPVIAGLDPKTFQPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + G+ ES W+P + PE LFE SQ ++ A +RD
Sbjct: 121 ICSLDLIGCPMETEDFVVSGTCSEQMYGMCESLWEPDMEPEDLFETISQAMLNAVDRDAV 180
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G V+V+E DK+T R + RMD
Sbjct: 181 SGMGVVVHVIEKDKITTRTLKARMD 205
>gi|255950036|ref|XP_002565785.1| Pc22g18820 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211592802|emb|CAP99170.1| Pc22g18820 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 206
Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 108/200 (54%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA VAM GK+C AI D L TI+ K+ +P YL GL D ++
Sbjct: 8 NGGACVAMVGKDCVAIACDLRLGMQSLTISNNFPKIFNYAPSTYLGLTGLATDVNTVSDL 67
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ Y E+ I+P T A + S LY ++ P F++P+IAG P +G+ F+ D
Sbjct: 68 FRYKVNMYRLREERDIAPQTLANLVSSSLYEKRF-GPYFVSPVIAGINPTTGKPFICGFD 126
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
GC DF+ G+A + + G E W+P L+PE LFE SQ ++ A +RD SGWGA
Sbjct: 127 SIGCIDFAKDFIVSGTASDQLFGTCEGLWEPDLAPEDLFETISQALLSAVDRDALSGWGA 186
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY++E DKVT R + R D
Sbjct: 187 QVYIIEKDKVTQRLLKGRQD 206
>gi|331245973|ref|XP_003335621.1| proteasome component PUP3 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|309314611|gb|EFP91202.1| proteasome component PUP3 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 204
Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 112/204 (54%), Gaps = 3/204 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQ 60
M LN GG++VAM GK C AI D L T+A KV Q++ +++ PGL D
Sbjct: 4 MELN-GGSVVAMVGKGCVAIACDLRLGNQALTVACNFEKVFQVTDKMFIGLPGLATDTFT 62
Query: 61 FAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFL 120
R Y E+ I P T A + S LY ++ P F+ P++AG E F+
Sbjct: 63 LKNVFRHRVNMYKMKEERVIEPQTMAHLISSTLYQKRF-GPYFVEPVVAGL-DSKNEPFI 120
Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKS 180
+ D+ GC DFV G+A + + G+ E+ W+P L+PE LFE SQ ++ A +RD S
Sbjct: 121 AATDLIGCINFAKDFVVSGTASSKLFGMAEALWEPDLAPEDLFETISQTLLNAVDRDAYS 180
Query: 181 GWGATVYVVEPDKVTIRKIATRMD 204
GWGA V+++E D+VT R + +RMD
Sbjct: 181 GWGAVVWIIEADQVTKRVLKSRMD 204
>gi|390595223|gb|EIN04629.1| 20S proteasome subunit beta 3 [Punctularia strigosozonata HHB-11173
SS5]
Length = 224
Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 82/220 (37%), Positives = 111/220 (50%), Gaps = 20/220 (9%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
+GG++VAM GK+C AI D L +A KV ++ +YL PGL D E
Sbjct: 6 TNGGSVVAMVGKDCVAIASDLRLGNQAQGLAANFQKVFSITDRIYLGLPGLATDVTTLYE 65
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAG------------- 110
+ RT Y E+ ISP+TFA + S LY + P FI P+IAG
Sbjct: 66 RFRFRTNMYTIKEEREISPETFAHLVSSTLYEHRF-GPYFIEPVIAGISAAPTASPSAVS 124
Query: 111 ---FYPDSG---EVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFE 164
P G + F++ D+ GC DFV G+A + + G+ E W+P L PE LFE
Sbjct: 125 SGTLAPPPGKKWQPFIAATDVIGCINFAKDFVVAGTASSTLFGVAEGLWEPDLEPEDLFE 184
Query: 165 VCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
SQ ++ A +RD SGWG V+V+ PDKV R + RMD
Sbjct: 185 TISQTMLNALDRDAYSGWGVVVHVITPDKVITRTLKARMD 224
>gi|389626557|ref|XP_003710932.1| proteasome component PUP3 [Magnaporthe oryzae 70-15]
gi|351650461|gb|EHA58320.1| proteasome component PUP3 [Magnaporthe oryzae 70-15]
Length = 206
Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 108/200 (54%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA VAM GK+C AI D L T++ K+ S ++L GL D ++
Sbjct: 8 NGGACVAMVGKDCVAIACDLRLGMQALTVSNNFPKIFSYSSSVFLGLTGLATDVATVSDL 67
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ Y E+ I+P TFA + S LY R+ P F++P++AG P +G F+ D
Sbjct: 68 FRYKVNMYRLREERNIAPRTFANLVSSSLYERRF-GPYFVSPVVAGLEPKTGAPFICGFD 126
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
GC DF+ G+A + G+ ES W+P L PE LFE SQ ++ A +RD SGWGA
Sbjct: 127 SIGCIDFAKDFIVSGTASEQLFGMCESLWEPDLGPEDLFETISQALLSAVDRDALSGWGA 186
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY++E DKVT R + R D
Sbjct: 187 HVYIIEKDKVTKRLLKGRQD 206
>gi|392562504|gb|EIW55684.1| N-terminal nucleophile aminohydrolase [Trametes versicolor
FP-101664 SS1]
Length = 208
Score = 149 bits (377), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 108/203 (53%), Gaps = 4/203 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG+++AM GK C AI D L I+ K+ MS +YL PGL D E
Sbjct: 7 NGGSVIAMVGKECVAIASDLRLGNQALGISSNFQKIFPMSDRIYLGLPGLATDVTTLKEV 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPD-SG--EVFLS 121
R Y E+ I P+TFA + S LY ++ P FI P++AG SG + F++
Sbjct: 67 FRYRVNMYTIKEEREIEPETFAHLVSSTLYEKRF-GPYFIEPVMAGLEKTPSGAYKPFIA 125
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
D+ GC DFV G+A + G+ E W+P L PE LFE C+Q ++ A +RD SG
Sbjct: 126 ATDLIGCLNFAKDFVVAGTASTKLYGVAEGLWEPDLEPEDLFETCAQTLLNAVDRDAYSG 185
Query: 182 WGATVYVVEPDKVTIRKIATRMD 204
WGA V+++ DKV R + RMD
Sbjct: 186 WGAEVHLITKDKVIKRTLKGRMD 208
>gi|392877590|gb|AFM87627.1| proteasome (prosome, macropain) subunit, beta type, 3
[Callorhinchus milii]
Length = 205
Score = 149 bits (377), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 113/205 (55%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N G AI+AM GKNC AI D +Q +++ K++ M LY+ GL D
Sbjct: 4 MSYN-GAAIMAMKGKNCVAIASDRRFGIQAQLVTTDFQ-KIYPMGERLYIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
++++ R Y E I P TF ++ S LY R+ P +++P+IAG +P + E F
Sbjct: 62 TVSQRLKFRLNLYELKEGRQIKPKTFMSMVSNLLYERRF-GPYYVDPVIAGLHPKTFEPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + G+ ES W+P L E LFE SQ ++ A +RD
Sbjct: 121 ICSLDVIGCPMETDDFVVSGTCSEQMYGMCESLWEPDLESEDLFEPISQAMLNAVDRDAI 180
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G V+V+E DK+T R + RMD
Sbjct: 181 SGMGVIVHVIEKDKITTRTLKARMD 205
>gi|296805183|ref|XP_002843416.1| proteasome component PUP3 [Arthroderma otae CBS 113480]
gi|238844718|gb|EEQ34380.1| proteasome component PUP3 [Arthroderma otae CBS 113480]
Length = 223
Score = 149 bits (377), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 109/200 (54%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
DGGA VAM GK+C AI D L T++ K+ +P YL GL D ++
Sbjct: 25 DGGACVAMVGKDCVAIACDLRLGLQALTVSNEFPKIFNYAPSTYLGLTGLATDVNTVSQL 84
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ + Y E+ ISP T A + S LY ++ P F++P++AG +G+ F+ D
Sbjct: 85 LRYKVNLYRLREERNISPQTLANLVSSSLYEKRF-GPFFVSPVLAGINHTTGKPFVCGFD 143
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
GC +F+ G+A + + G ES W+P L PE LFE SQ ++ A +RD SGWGA
Sbjct: 144 SIGCIDFAKNFIVSGTASDQLYGTCESLWEPDLEPEDLFETISQALLNAVDRDALSGWGA 203
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY++E DKVT RK+ R D
Sbjct: 204 YVYIIEKDKVTKRKLKGRQD 223
>gi|56541012|gb|AAH87457.1| Unknown (protein for MGC:99279) [Xenopus laevis]
Length = 205
Score = 149 bits (377), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 79/205 (38%), Positives = 112/205 (54%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGAI+AM GK+C AI D VQ +++ K+ M LY+ GL D
Sbjct: 4 MSYN-GGAIMAMKGKDCVAIAADRRFGVQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
++++ R Y E I P TF ++ + LY R+ P +I P+IAG P + + F
Sbjct: 62 TVSQRLKFRLNLYELKEGRQIKPKTFMSMVANLLYERRF-GPYYIEPVIAGLDPKTFQPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + G+ ES W+P + PE LFE SQ ++ A +RD
Sbjct: 121 ICSLDLIGCPMETEDFVVSGTCSEQMYGMCESLWEPDMEPEDLFETISQAMLNAVDRDAV 180
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G V+V+E DKVT R + RMD
Sbjct: 181 SGMGVVVHVIEKDKVTTRTLKARMD 205
>gi|302683915|ref|XP_003031638.1| hypothetical protein SCHCODRAFT_15691 [Schizophyllum commune H4-8]
gi|300105331|gb|EFI96735.1| hypothetical protein SCHCODRAFT_15691 [Schizophyllum commune H4-8]
Length = 208
Score = 149 bits (376), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 110/203 (54%), Gaps = 4/203 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG+++AM GK+C AI D L I+ + K+ ++ Y+ GL +D + EK
Sbjct: 7 NGGSVIAMVGKDCVAIASDLRLGNQAQGISTHFEKIFPVTDRTYVGLAGLASDVLTLREK 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFY--PDSG-EVFLS 121
R Y E+ I P+TFA +AS LY + P FI P+IAG P G + F++
Sbjct: 67 FRFRVNMYTIKEEREIQPETFAHLASSTLYEHRF-GPYFIEPVIAGMQKTPSGGYKPFIA 125
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
D+ GC DFV G+A + G+ ES W+P L PE LFE SQ ++ A +RD SG
Sbjct: 126 AADLIGCLNFAKDFVLAGTASEKLFGVAESLWEPDLEPEDLFETISQTIMNAVDRDAYSG 185
Query: 182 WGATVYVVEPDKVTIRKIATRMD 204
WG V+V+ DKV R + RMD
Sbjct: 186 WGCIVHVITQDKVITRTLKARMD 208
>gi|164660346|ref|XP_001731296.1| hypothetical protein MGL_1479 [Malassezia globosa CBS 7966]
gi|159105196|gb|EDP44082.1| hypothetical protein MGL_1479 [Malassezia globosa CBS 7966]
Length = 201
Score = 149 bits (376), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 107/200 (53%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG+++AM GKNC AI D L ++ +KV +M+ Y+ PGL D EK
Sbjct: 4 NGGSVIAMTGKNCVAIASDLRLGNQALLLSTQFDKVFRMTDRTYVGLPGLATDVATLREK 63
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
R Y E I P+TFA + S LY R+ P FI P++AG ++ E F++ D
Sbjct: 64 FRYRLNMYRMKEDRDIEPETFAKLMSSTLYERRF-GPYFIEPVVAGMNSNN-EPFIAASD 121
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC DFV G+A + + G+ E W+P L PE LFE SQ ++ ERD SG G
Sbjct: 122 LIGCLNFAKDFVVSGTASDRLFGMAEGLWEPDLEPEDLFETISQTMLGGIERDALSGMGV 181
Query: 185 TVYVVEPDKVTIRKIATRMD 204
V ++ PDKV R + RMD
Sbjct: 182 IVRIITPDKVIERTLKCRMD 201
>gi|58258585|ref|XP_566705.1| proteasome subunit beta type 3 [Cryptococcus neoformans var.
neoformans JEC21]
gi|57222842|gb|AAW40886.1| proteasome subunit beta type 3, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 210
Score = 149 bits (375), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 83/209 (39%), Positives = 111/209 (53%), Gaps = 7/209 (3%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQ 60
M LN GG++VAM GK+C AI D L IA +KV ++ LY PGL D
Sbjct: 4 MELN-GGSVVAMIGKDCVAIASDLRLGNQQVGIAANFDKVFPINDKLYCGLPGLATDVYT 62
Query: 61 FAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGF-YPDSGEV- 118
E + R Y E+ I+P TF + S LY ++ P F+ P++AG P S E
Sbjct: 63 LREHLRFRVNMYRMKEEREITPKTFTHLLSSTLYEKRF-GPFFLEPVVAGLPTPTSLEPH 121
Query: 119 ---FLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACE 175
++ST+D GC T DF G+A + + GI E W+P L PE LFE SQ ++ A +
Sbjct: 122 PRPYISTMDTIGCITTPKDFAVAGTAADKLYGIAEGLWEPDLEPEDLFETISQTLLSAVD 181
Query: 176 RDTKSGWGATVYVVEPDKVTIRKIATRMD 204
RD SGWGA V ++ DKV R + RMD
Sbjct: 182 RDALSGWGAVVNIITHDKVITRTLRARMD 210
>gi|238491746|ref|XP_002377110.1| proteasome component Pup3, putative [Aspergillus flavus NRRL3357]
gi|317146166|ref|XP_001821334.2| proteasome component PUP3 [Aspergillus oryzae RIB40]
gi|220697523|gb|EED53864.1| proteasome component Pup3, putative [Aspergillus flavus NRRL3357]
gi|391869220|gb|EIT78422.1| 20S proteasome, regulatory subunit beta type PSMB3/PUP3
[Aspergillus oryzae 3.042]
Length = 206
Score = 149 bits (375), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 108/200 (54%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA VAM GK+C AI D L T++ K+ SP +L GL D ++
Sbjct: 8 NGGACVAMVGKDCVAIACDLRLGMQALTVSNNFPKIFNYSPSTFLGLTGLATDVSTVSDL 67
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ Y E+ I+P T A + S LY R+ P F++P++AG +G+ F+ D
Sbjct: 68 FRYKVNMYRLREERNIAPQTLANLVSSSLYERRF-GPFFVSPVVAGINSTTGKPFICGFD 126
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
GC DF+ G+A + + G ES W+P L+PE LFE SQ ++ A +RD SGWGA
Sbjct: 127 SIGCIDFAKDFIVSGTASDQLFGTCESLWEPDLAPEDLFETISQALLSAVDRDALSGWGA 186
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY++E DKVT R + R D
Sbjct: 187 QVYIIEKDKVTKRLLKGRQD 206
>gi|449016282|dbj|BAM79684.1| 20S core proteasome subunit beta 3 [Cyanidioschyzon merolae strain
10D]
Length = 207
Score = 149 bits (375), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 113/200 (56%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA+ A G C AI D Q T+A N++ ++ L L GL D + AE+
Sbjct: 10 NGGAVFAATGNQCVAIAADRRFGQAQLTLACDANRLFRVHDRLVLGLTGLATDCLTLAER 69
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ +RT Y E+ P T +A+ S LY R+ +P F+ P+I G D+ + + ++D
Sbjct: 70 VRMRTNLYRLGEKREPKPATISALVSALLYERRF-APYFVEPVIVGLSGDN-KPYCCSMD 127
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ G +FVA G+ + G GE+FW+PGL PE LFEV +Q ++ A +RD SGWGA
Sbjct: 128 LLGTPMETDEFVAAGTCAESLYGTGETFWRPGLDPEDLFEVTAQCMLAALDRDCLSGWGA 187
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VYV+ + VT+R++ RMD
Sbjct: 188 VVYVLHSEGVTVRELKARMD 207
>gi|395331331|gb|EJF63712.1| N-terminal nucleophile aminohydrolase [Dichomitus squalens LYAD-421
SS1]
Length = 208
Score = 149 bits (375), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 108/203 (53%), Gaps = 4/203 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG+++AM GK+C AI D L I+ K+ M+ ++L PGL D E
Sbjct: 7 NGGSVIAMVGKDCVAIASDLRLGNQALGISSNFQKIFPMTNRIFLGLPGLATDVTTLKET 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGF---YPDSGEVFLS 121
R + E+ I P+TFA + S LY R+ P FI P++AG + S + +++
Sbjct: 67 FRYRVNMFTIKEEREIEPETFAHLVSSTLYERRF-GPWFIEPVMAGLQKTHDGSYKPYIA 125
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
D+ GC DFV G+A + G+ E W+P L PE LFE SQ ++ A +RD SG
Sbjct: 126 ATDLIGCLNFAKDFVVAGTASTKLFGVAEGLWEPDLEPEDLFETISQTLLNAVDRDAYSG 185
Query: 182 WGATVYVVEPDKVTIRKIATRMD 204
WGA VYV+ DKV R + RMD
Sbjct: 186 WGAEVYVLTKDKVIKRTLKGRMD 208
>gi|405117743|gb|AFR92518.1| proteasome subunit beta type 3 [Cryptococcus neoformans var. grubii
H99]
Length = 210
Score = 149 bits (375), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 83/209 (39%), Positives = 111/209 (53%), Gaps = 7/209 (3%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQ 60
M LN GG++VAM GK+C AI D L IA +KV ++ LY PGL D
Sbjct: 4 MELN-GGSVVAMIGKDCVAIASDLRLGNQQVGIAANFDKVFPVNDKLYCGLPGLATDVYT 62
Query: 61 FAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGF-YPDSGEV- 118
E + R Y E+ I+P TF + S LY ++ P F+ P++AG P S E
Sbjct: 63 LREHLRFRVNMYRMKEEREITPKTFTHLLSSTLYEKRF-GPFFLEPVVAGLPTPTSLEPH 121
Query: 119 ---FLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACE 175
++ST+D GC T DF G+A + + GI E W+P L PE LFE SQ ++ A +
Sbjct: 122 PKPYISTMDTIGCITTPKDFAVAGTAADKLYGIAEGLWEPDLEPEDLFETISQTLLSAVD 181
Query: 176 RDTKSGWGATVYVVEPDKVTIRKIATRMD 204
RD SGWGA V ++ DKV R + RMD
Sbjct: 182 RDALSGWGAVVNIITHDKVITRTLRARMD 210
>gi|254578212|ref|XP_002495092.1| ZYRO0B03146p [Zygosaccharomyces rouxii]
gi|238937982|emb|CAR26159.1| ZYRO0B03146p [Zygosaccharomyces rouxii]
Length = 205
Score = 149 bits (375), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 108/200 (54%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG VAM GK+C AI D L ++ K+ + H++L GL D +E
Sbjct: 8 NGGVCVAMTGKDCVAIACDLRLGMQSLGVSNNFEKIFKYG-HVFLGLTGLATDVTTLSET 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+T Y E PI P+TF + S LY R+ P F+ PI+AG +G+ F++ D
Sbjct: 67 FRYKTNLYNLKEDRPIEPETFTQLVSSSLYERRF-GPFFVGPIVAGINSKTGKPFIAGFD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
M GC DF+ G+A + + G+ ES ++P L PE LFE SQ ++ A +RD SGWGA
Sbjct: 126 MIGCIDEAKDFIVSGTASDQLFGMCESLYEPDLEPEDLFETISQSLLNAVDRDALSGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY+++ DK + + TR D
Sbjct: 186 VVYIIQKDKAVKKYLRTRQD 205
>gi|62858119|ref|NP_001016503.1| proteasome beta 3 subunit [Xenopus (Silurana) tropicalis]
gi|163916422|gb|AAI57195.1| proteasome (prosome, macropain) subunit, beta type 3 [Xenopus
(Silurana) tropicalis]
Length = 205
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 112/205 (54%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGAI+AM GK+C AI D VQ +++ K+ M LY+ GL D
Sbjct: 4 MSYN-GGAIMAMRGKDCVAIAADRRFGVQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
++++ R Y E I P TF ++ + LY R+ P +I P+IAG P + + F
Sbjct: 62 TVSQRLKFRLNLYELKEGRQIKPKTFMSMVANLLYERRF-GPYYIEPVIAGLDPKTFKPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + G+ ES W+P + PE LFE SQ ++ A +RD
Sbjct: 121 ICSLDLIGCPMETEDFVVSGTCSEQMYGMCESLWEPDMEPEDLFETISQAMLNAVDRDAV 180
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G V+V+E DK+T R + RMD
Sbjct: 181 SGMGVVVHVIEKDKITTRTLKARMD 205
>gi|328862302|gb|EGG11403.1| 20S proteasome subunit [Melampsora larici-populina 98AG31]
Length = 201
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/204 (36%), Positives = 115/204 (56%), Gaps = 3/204 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQ 60
M LN GG+++AM GK+C AI D L T+A KV ++ +Y+ PGL +D +
Sbjct: 1 MELN-GGSVIAMVGKDCVAIACDLRLGNQALTVACNFEKVFPVTDKVYIGLPGLASDTVT 59
Query: 61 FAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFL 120
++ R Y E+ I P+T A + S LY ++ P F+ P+IAG E F+
Sbjct: 60 LRQQFRHRVNMYKMKEERTIEPETMAHLVSSTLYQKRF-GPYFVEPVIAGL-NSKNEPFI 117
Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKS 180
+ D+ GC DFV G+A + + G+ E+ W+P L PE LFE SQ ++ A +RD S
Sbjct: 118 AATDLIGCINFAKDFVVSGTASDKLFGMAEALWEPNLEPEDLFETISQSLMNAMDRDAYS 177
Query: 181 GWGATVYVVEPDKVTIRKIATRMD 204
GWGA V++++ D++ R + +RMD
Sbjct: 178 GWGAVVWIIQKDQIIKRVLKSRMD 201
>gi|425781832|gb|EKV19776.1| hypothetical protein PDIG_01170 [Penicillium digitatum PHI26]
gi|425782962|gb|EKV20840.1| hypothetical protein PDIP_12490 [Penicillium digitatum Pd1]
Length = 206
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 108/200 (54%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA VAM GK+C AI D L TI+ K+ +P YL GL D ++
Sbjct: 8 NGGACVAMVGKDCVAIACDLRLGMQALTISNNFPKIFNYAPSTYLGLTGLATDVNTVSDL 67
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ Y E+ I+P T A + S LY ++ P F++P++AG P +G+ F+ D
Sbjct: 68 FRYKVNMYRLREERDIAPQTLANLVSSSLYEKRF-GPYFVSPVLAGINPTTGKPFICGFD 126
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
GC DF+ G+A + + G E W+P L+PE LFE SQ ++ A +RD SGWGA
Sbjct: 127 SIGCIDFAKDFIVSGTASDQLFGTCEGLWEPDLAPEDLFETISQALLSAVDRDALSGWGA 186
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY++E DKVT R + R D
Sbjct: 187 QVYIIEKDKVTQRLLKGRQD 206
>gi|242808757|ref|XP_002485230.1| proteasome component Pup3, putative [Talaromyces stipitatus ATCC
10500]
gi|218715855|gb|EED15277.1| proteasome component Pup3, putative [Talaromyces stipitatus ATCC
10500]
Length = 206
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 106/200 (53%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA VAM GK+C AI D L T++ K+ +P YL GL D ++
Sbjct: 8 NGGACVAMVGKDCVAIACDLRLGMQALTVSNNFPKIFNYAPSTYLGLTGLATDVTTVSDL 67
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ Y E+ ISP T A + S LY R+ P F++P+IAG +G+ F+ D
Sbjct: 68 FRYKVNMYRLREERHISPQTLANLVSSSLYERRF-GPYFVSPVIAGINHTTGKPFICGFD 126
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
GC DF+ G+A + + G E W+P L PE LFE SQ ++ A +RD SGWGA
Sbjct: 127 SIGCIDFAKDFIVSGTASDQLFGTCEGLWEPDLGPEDLFETISQALLNAVDRDALSGWGA 186
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY++E DKVT R + R D
Sbjct: 187 NVYIIEKDKVTKRLLKGRQD 206
>gi|193788711|ref|NP_001123295.1| proteasome subunit beta type-3 [Danio rerio]
gi|29124577|gb|AAH49010.1| Psmb3 protein [Danio rerio]
Length = 205
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 111/205 (54%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GK C AI D +Q +++ K+ M LY+ GL D
Sbjct: 4 MSYN-GGAVMAMRGKECVAIASDRRFGIQAQLVTTDFQ-KIFPMGERLYIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
++++ R Y E I P TF ++ S LY R+ P +I P+IAG P + E F
Sbjct: 62 TVSQRLKFRLNLYELKEGRQIKPRTFMSMVSNLLYERRF-GPYYIEPVIAGLDPKTFEPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + G+ ES W+P + PE LFE SQ ++ A +RD
Sbjct: 121 ICSLDLIGCPMVTEDFVVSGTCSEQMYGMCESLWEPDMKPEDLFETISQAMLNAVDRDAV 180
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G V+V+E DK+T R + RMD
Sbjct: 181 SGMGVVVHVIEKDKITTRTLKARMD 205
>gi|367052597|ref|XP_003656677.1| hypothetical protein THITE_2147182 [Thielavia terrestris NRRL 8126]
gi|347003942|gb|AEO70341.1| hypothetical protein THITE_2147182 [Thielavia terrestris NRRL 8126]
Length = 192
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 107/193 (55%), Gaps = 1/193 (0%)
Query: 12 MAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTAN 71
MAGK+C AI D L T++ K+ Q H++L GL D A+ +
Sbjct: 1 MAGKDCVAIACDLRLGLQALTVSNNFPKIFQYGDHVFLGLTGLATDVATVADLFRYKVNL 60
Query: 72 YVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETR 131
Y E+ I+P TFA + S LY R+ P F++P++AG P +G+ F+ D GC
Sbjct: 61 YRLREERHIAPRTFANLVSSSLYERRF-GPFFVSPVVAGLDPKTGQPFICGFDSIGCIDF 119
Query: 132 KTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEP 191
DF+ G+A + + G+ ES W+P L P++LFE SQ ++ A +RD SGWGA VY++E
Sbjct: 120 AKDFIVSGTASDQLFGMCESLWEPDLGPDELFETISQALLNAVDRDALSGWGAHVYIIEK 179
Query: 192 DKVTIRKIATRMD 204
DKVT R + R D
Sbjct: 180 DKVTKRLLKGRQD 192
>gi|185133100|ref|NP_001117722.1| proteasome subunit beta type-3 [Oncorhynchus mykiss]
gi|6093786|sp|O73817.1|PSB3_ONCMY RecName: Full=Proteasome subunit beta type-3; AltName:
Full=Proteasome chain 13; AltName: Full=Proteasome
component C10-II; AltName: Full=Proteasome theta chain
gi|3063687|gb|AAC14141.1| proteasome subunit C10-11 [Oncorhynchus mykiss]
gi|225705904|gb|ACO08798.1| Proteasome subunit beta type 3 [Oncorhynchus mykiss]
Length = 205
Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 79/205 (38%), Positives = 110/205 (53%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GK C AI D VQ +++ K+ M LY+ GL D
Sbjct: 4 MSYN-GGAVMAMKGKQCVAIAADRRFGVQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
++++ R Y E I P TF ++ S LY R+ P +I P+IAG P + E F
Sbjct: 62 TVSQRLKFRLNLYELKEGRQIKPKTFMSMVSNLLYERRF-GPYYIEPVIAGLDPKTFEPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + G+ ES W+P + PE LFE SQ ++ A +RD
Sbjct: 121 ICSLDLIGCPMVTEDFVVSGTCSEQMYGMCESLWEPDMEPEDLFETISQAMLNAVDRDAV 180
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G V V+E DK+T R + RMD
Sbjct: 181 SGMGVVVQVIEKDKITTRTLKARMD 205
>gi|327304369|ref|XP_003236876.1| proteasome subunit beta [Trichophyton rubrum CBS 118892]
gi|326459874|gb|EGD85327.1| proteasome subunit beta [Trichophyton rubrum CBS 118892]
Length = 214
Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 109/200 (54%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA VAM GK+C AI D L T++ K+ +P YL GL D ++
Sbjct: 16 NGGACVAMVGKDCVAIACDLRLGLQALTVSNEFPKIFNYAPSTYLGLTGLATDVNTVSQL 75
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ + Y E+ ISP T A + S LY ++ P F++P++AG +G+ F+ D
Sbjct: 76 LRYKVNLYRLREERNISPQTLANLVSSSLYEKRF-GPFFVSPVLAGINHTTGKPFICGFD 134
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
GC +F+ G+A + + G ES W+P L PE LFE SQ ++ A +RD SGWGA
Sbjct: 135 SIGCIDFAKNFIVSGTASDQLYGTCESLWEPDLEPEDLFETISQALLNAVDRDALSGWGA 194
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY++E DKVT RK+ R D
Sbjct: 195 YVYIIEKDKVTKRKLKGRQD 214
>gi|326472712|gb|EGD96721.1| proteasome subunit beta type-3 [Trichophyton tonsurans CBS 112818]
gi|326482041|gb|EGE06051.1| proteasome component PUP3 [Trichophyton equinum CBS 127.97]
Length = 206
Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 109/200 (54%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA VAM GK+C AI D L T++ K+ +P YL GL D ++
Sbjct: 8 NGGACVAMVGKDCVAIACDLRLGLQALTVSNEFPKIFNYAPSTYLGLTGLATDVNTVSQL 67
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ + Y E+ ISP T A + S LY ++ P F++P++AG +G+ F+ D
Sbjct: 68 LRYKVNLYRLREERNISPQTLANLVSSSLYEKRF-GPFFVSPVLAGINHTTGKPFICGFD 126
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
GC +F+ G+A + + G ES W+P L PE LFE SQ ++ A +RD SGWGA
Sbjct: 127 SIGCIDFAKNFIVSGTASDQLYGTCESLWEPDLEPEDLFETISQALLNAVDRDALSGWGA 186
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY++E DKVT RK+ R D
Sbjct: 187 YVYIIEKDKVTKRKLKGRQD 206
>gi|209737458|gb|ACI69598.1| Proteasome subunit beta type-3 [Salmo salar]
gi|303661230|gb|ADM16027.1| Proteasome subunit beta type-3 [Salmo salar]
Length = 205
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/205 (38%), Positives = 110/205 (53%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GK C AI D VQ +++ K+ M LY+ GL D
Sbjct: 4 MSYN-GGAVMAMKGKQCVAIAADRRFGVQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
++++ R Y E I P TF ++ S LY R+ P +I P+IAG P + E F
Sbjct: 62 TVSQRLKFRLNLYELKEGRQIKPKTFMSMVSNLLYERRF-GPYYIEPVIAGLDPKTFEPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + G+ ES W+P + PE LFE SQ ++ A +RD
Sbjct: 121 ICSLDLIGCPMVTEDFVVSGTCSEQMHGMCESLWEPDMEPEDLFETISQAMLNAVDRDAV 180
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G V V+E DK+T R + RMD
Sbjct: 181 SGMGVVVQVIEKDKITTRTLKARMD 205
>gi|395532536|ref|XP_003768326.1| PREDICTED: proteasome subunit beta type-3 [Sarcophilus harrisii]
Length = 205
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 112/205 (54%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GKNC AI D +Q +++ K+ M LY+ GL D
Sbjct: 4 MSYN-GGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
A+++ R Y E I P+T ++ + LY ++ P + P+IAG +P + E F
Sbjct: 62 TVAQRLKFRLNLYELKEGRQIKPNTLMSMVANLLYEKRF-GPYYTEPVIAGLHPKTFEPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + G+ ES W+P + PE LFE SQ ++ A +RD
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPDMEPEHLFETISQAMLNAVDRDAV 180
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G V+++E DK+T R + RMD
Sbjct: 181 SGMGVIVHIIEKDKITTRTLKARMD 205
>gi|389742559|gb|EIM83745.1| 20S proteasome subunit beta 3 [Stereum hirsutum FP-91666 SS1]
Length = 213
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/208 (38%), Positives = 108/208 (51%), Gaps = 9/208 (4%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG++VAM GK+C AI D L T+A KV ++ +YL PGL D E+
Sbjct: 7 NGGSVVAMVGKDCVAIASDLRLGNQALTVATNFEKVFPVTDRIYLGLPGLATDVTTLRER 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGF--YPDSG------ 116
R Y E I P TFA + S LY + P FI P+IAG P S
Sbjct: 67 FRFRVNMYTIKESREIQPSTFAHLVSSTLYEHRF-GPYFIEPVIAGLERLPTSTDEEPKF 125
Query: 117 EVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACER 176
E F++ D+ GC DFV G+A + + G E W+ ++PE+LFE SQ ++ A +R
Sbjct: 126 EPFIAATDLIGCLNFAKDFVVAGTASDKLFGCAEGLWEEDMNPEELFECISQTLLNAVDR 185
Query: 177 DTKSGWGATVYVVEPDKVTIRKIATRMD 204
D SGWGA V+V+ DKV R + RMD
Sbjct: 186 DAYSGWGAVVHVITKDKVVTRMLKGRMD 213
>gi|326934090|ref|XP_003213128.1| PREDICTED: proteasome subunit beta type-3-like [Meleagris
gallopavo]
Length = 205
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 111/205 (54%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GKNC AI D +Q +++ K+ M LY+ GL D
Sbjct: 4 MSYN-GGAVMAMRGKNCVAIAADRRFGIQAQMITTDFQ-KIFPMGERLYIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
A+++ R Y E I P TF ++ S LY R+ P + P+IAG P + E F
Sbjct: 62 TVAQRLKFRLNLYELKEGRQIKPQTFMSMVSNLLYERRF-GPYYTEPVIAGLDPITHEPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + G+ ES W+P + P+ LFE SQ ++ A +RD
Sbjct: 121 ICSLDLIGCPMITEDFVVSGTCSEQMYGMCESLWEPDMEPDHLFETISQAMLNAVDRDAL 180
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G V+++E DK+T R + RMD
Sbjct: 181 SGMGVVVHIIEKDKITTRTLKARMD 205
>gi|197632283|gb|ACH70865.1| proteasome (prosome, macropain) subunit, beta type 3 [Salmo salar]
gi|209735862|gb|ACI68800.1| Proteasome subunit beta type-3 [Salmo salar]
Length = 205
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/205 (38%), Positives = 110/205 (53%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GK C AI D VQ +++ K+ M LY+ GL D
Sbjct: 4 MSYN-GGAVMAMKGKQCVAIAADRRFGVQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
++++ R Y E I P TF ++ S LY R+ P +I P+IAG P + E F
Sbjct: 62 TVSQRLKFRLNLYELKEGRQIKPKTFMSMVSNLLYERRF-GPYYIEPVIAGLDPKTFEPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + G+ ES W+P + PE LFE SQ ++ A +RD
Sbjct: 121 ICSLDLIGCPMVTEDFVVSGTCSEQMYGMCESLWEPDMEPEDLFETISQAMLNAVDRDAV 180
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G V V+E DK+T R + RMD
Sbjct: 181 SGMGVIVQVIEKDKITTRTLKARMD 205
>gi|385301682|gb|EIF45855.1| proteasome component pup3 [Dekkera bruxellensis AWRI1499]
Length = 206
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 108/203 (53%), Gaps = 2/203 (0%)
Query: 2 SLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQF 61
S +GG+ VAM GK+C AI D L Q ++ K+ H++L GL D M
Sbjct: 6 STYNGGSAVAMVGKDCVAIASDLRLGQQSLGLSNDFEKIFHYG-HVFLGLTGLATDVMSV 64
Query: 62 AEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLS 121
E + +T Y EQ I P +FA + S LY R+ P F+ PI+AG SG+ F+
Sbjct: 65 HEDLRKKTNLYKMKEQREIEPXSFANLISSSLYKRRF-GPWFVGPIVAGLNSHSGKPFIC 123
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
D GC DF+ G+A + G+ ES ++P L PE LFE SQ ++ A +RD SG
Sbjct: 124 GFDYIGCIDFAKDFIVAGTASEQLFGMCESLYEPNLEPEDLFETISQALLNAVDRDALSG 183
Query: 182 WGATVYVVEPDKVTIRKIATRMD 204
WGA VYV+ DKV R + TR D
Sbjct: 184 WGAVVYVITKDKVVKRFLKTRQD 206
>gi|318102146|ref|NP_001188163.1| proteasome subunit beta type-3 [Ictalurus punctatus]
gi|308323613|gb|ADO28942.1| proteasome subunit beta type-3 [Ictalurus punctatus]
Length = 205
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 112/205 (54%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GK+C AI D +Q +++ K+ M LY+ GL D
Sbjct: 4 MSYN-GGAVMAMRGKDCVAIASDRRFGIQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
++++ R Y E I P TF ++ S LY R+ P +I P+IAG P + E F
Sbjct: 62 TVSQRLKFRLNLYELKEGRQIKPKTFMSMVSNLLYERRF-GPYYIEPVIAGLDPKTFEPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + G+ ES W+P + PE LFE SQ ++ A +RD
Sbjct: 121 ICSLDLIGCPMITEDFVVSGTCAEQMYGMCESLWEPDMGPEDLFETISQAMLNAVDRDAV 180
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G V+V+E DK+T R + RMD
Sbjct: 181 SGMGVIVHVIEKDKITTRTLKARMD 205
>gi|118102948|ref|XP_418119.2| PREDICTED: proteasome subunit beta type-3 [Gallus gallus]
Length = 205
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 111/205 (54%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GKNC AI D +Q +++ K+ M LY+ GL D
Sbjct: 4 MSYN-GGAVMAMRGKNCVAIASDRRFGIQAQMVTTDFQ-KIFPMGERLYIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
A+++ R Y E I P TF ++ S LY R+ P + P+IAG P + E F
Sbjct: 62 TVAQRLKFRLNLYELKEGRQIKPQTFMSMVSNLLYERRF-GPYYTEPVIAGLDPITHEPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + G+ ES W+P + P+ LFE SQ ++ A +RD
Sbjct: 121 ICSLDLIGCPMITEDFVVSGTCSEQMYGMCESLWEPDMEPDHLFETISQAMLNAVDRDAI 180
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G V+++E DK+T R + RMD
Sbjct: 181 SGMGVVVHIIEKDKITTRTLKARMD 205
>gi|156036470|ref|XP_001586346.1| hypothetical protein SS1G_12924 [Sclerotinia sclerotiorum 1980]
gi|154698329|gb|EDN98067.1| hypothetical protein SS1G_12924 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 206
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 106/200 (53%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA VAM GK+C AI D L T++ K+ P +YL GL D ++
Sbjct: 8 NGGACVAMVGKDCVAIACDLRLGLQALTVSNNFPKIFSYGPSVYLGLTGLATDVSTVSDL 67
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ Y E+ ISP T A + S LY R+ P F++P+IAG +G+ F+ D
Sbjct: 68 FRYKVNMYRLREERNISPTTMANLVSSSLYERRF-GPFFVSPVIAGLDQKTGKPFICGFD 126
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
GC DF+ G+A + + G E W+P L PE LFE SQ ++ A +RD SGWGA
Sbjct: 127 SIGCIDFAKDFIVSGTASDQLFGTCEGLWEPDLGPEDLFETISQALLNAVDRDALSGWGA 186
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY++E DKVT R + R D
Sbjct: 187 HVYIIEKDKVTKRLLKGRQD 206
>gi|121706806|ref|XP_001271634.1| proteasome component Pup3, putative [Aspergillus clavatus NRRL 1]
gi|119399782|gb|EAW10208.1| proteasome component Pup3, putative [Aspergillus clavatus NRRL 1]
Length = 206
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 106/200 (53%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA VAM GK+C AI D L T++ K+ P +L GL D ++
Sbjct: 8 NGGACVAMVGKDCVAIACDLRLGMQALTVSNNFPKIFNYGPSTFLGLTGLATDVNTVSDL 67
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ Y E+ I+P T A + S LY R+ P F++P+IAG +G+ F+ D
Sbjct: 68 FRFKVNMYRLREERNIAPQTLANLVSSSLYERRF-GPFFVSPVIAGVNSTTGKPFICGFD 126
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
GC DF+ G+A + + G E W+P LSPE LFE SQ ++ A +RD SGWGA
Sbjct: 127 SIGCIDFAKDFIVSGTASDQLFGTCEGLWEPDLSPEDLFETISQALLSAVDRDALSGWGA 186
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY++E DKVT R + R D
Sbjct: 187 QVYIIEKDKVTKRLLKGRQD 206
>gi|156849065|ref|XP_001647413.1| hypothetical protein Kpol_1018p88 [Vanderwaltozyma polyspora DSM
70294]
gi|156118099|gb|EDO19555.1| hypothetical protein Kpol_1018p88 [Vanderwaltozyma polyspora DSM
70294]
Length = 205
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 109/200 (54%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG +VAM GK+C AI D L ++ K+ H++L GL D + +E+
Sbjct: 8 NGGIVVAMTGKDCVAIACDLRLGNQSLGVSNNFEKIFHYG-HVFLGITGLATDVLTLSEE 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+T Y E I P+TF + S LY R+ P F+ P++AG SG+ F++ D
Sbjct: 67 FRYKTNLYKLREDRLIEPETFTQLVSSTLYERRF-GPYFVGPVVAGINSKSGKPFIAGFD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC DF+ G+A + + G+ ES ++P L E LFE SQ ++ A +RD SGWGA
Sbjct: 126 LIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEAEDLFETISQALLNAADRDALSGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY+++ DKV R + TR D
Sbjct: 186 VVYIIKKDKVIKRHLKTRQD 205
>gi|367018856|ref|XP_003658713.1| hypothetical protein MYCTH_2055659 [Myceliophthora thermophila ATCC
42464]
gi|347005980|gb|AEO53468.1| hypothetical protein MYCTH_2055659 [Myceliophthora thermophila ATCC
42464]
Length = 192
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 105/193 (54%), Gaps = 1/193 (0%)
Query: 12 MAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTAN 71
M GK+C AI D L T++ K+ Q H++L GL D A+ +
Sbjct: 1 MVGKDCVAIACDLRLGLQALTVSNNFPKIFQYGDHVFLGLTGLATDVSTVADLFRYKVNM 60
Query: 72 YVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETR 131
Y E+ I+P TFA + S LY R+ P F+NP++AG P +G F+ D GC
Sbjct: 61 YRLREERHIAPRTFANLVSTTLYERRF-GPYFVNPVVAGLEPKTGAPFICGFDSIGCIDF 119
Query: 132 KTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEP 191
DF+ G+A + G+ E+FW+P L P++LFE SQ ++ A +RD SGWGA VY++E
Sbjct: 120 AKDFIVSGTATEQLYGMCENFWEPNLGPDELFETISQALLNAVDRDALSGWGAHVYIIEK 179
Query: 192 DKVTIRKIATRMD 204
DKVT R + R D
Sbjct: 180 DKVTKRLLKGRQD 192
>gi|409043787|gb|EKM53269.1| hypothetical protein PHACADRAFT_259498 [Phanerochaete carnosa
HHB-10118-sp]
Length = 208
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/204 (37%), Positives = 108/204 (52%), Gaps = 4/204 (1%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG+++AM GK+C AI D L +I K+ ++ L++ PGL D E
Sbjct: 6 HNGGSVIAMVGKDCVAIASDLRLGVQSLSITSDFEKIFPVTDRLFVGLPGLATDVTTLRE 65
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFY--PDSGEV-FL 120
+ R Y E+ I P TFA + S LY R+ P FI P++AG P G F+
Sbjct: 66 QFRYRVNMYTIKEEREIEPQTFAQLVSSTLYERRF-GPYFIEPVMAGMQKTPAGGYAPFI 124
Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKS 180
+ D+ GC DFV G+A + G+ E W+P L E LFE SQ ++ A +RD S
Sbjct: 125 AATDLIGCLNFAKDFVVAGTASEKLFGVAEGLWEPDLEAEDLFETISQTLLNALDRDAFS 184
Query: 181 GWGATVYVVEPDKVTIRKIATRMD 204
GWGA V+V+ DKV RK+ RMD
Sbjct: 185 GWGAVVHVITKDKVITRKLKGRMD 208
>gi|320164183|gb|EFW41082.1| proteasome subunit beta type-3 [Capsaspora owczarzaki ATCC 30864]
Length = 192
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 75/193 (38%), Positives = 104/193 (53%), Gaps = 1/193 (0%)
Query: 12 MAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTAN 71
M GK C AI D T++ K +M L++ GL D A K+ R
Sbjct: 1 MKGKGCVAIAADRRFGIQAQTVSTDFQKTFKMGDRLFIGLAGLATDVQTVASKLQFRVNM 60
Query: 72 YVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETR 131
Y E+ ++P+TF I + LY ++ P FI P+IAG P SGE F++ D+ GC
Sbjct: 61 YHLREERSVAPETFMNIVANVLYEKRF-GPFFIEPVIAGLDPVSGEPFVAATDLIGCPDV 119
Query: 132 KTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEP 191
DF G+A + G+ ES ++P L PE LFEV SQ ++ C+RD SGWGA V+++E
Sbjct: 120 ADDFAVVGTASEQLYGMCESMYEPNLEPEDLFEVVSQCLMNGCDRDAISGWGAVVHIIEK 179
Query: 192 DKVTIRKIATRMD 204
DKVT R + RMD
Sbjct: 180 DKVTTRTLKARMD 192
>gi|401626020|gb|EJS43988.1| pup3p [Saccharomyces arboricola H-6]
Length = 205
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 107/200 (53%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG +VAMAGK+C AI D L ++ K+ H++ GL +D E
Sbjct: 8 NGGVVVAMAGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFFGVTGLASDVTTLNEM 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+T Y E I P+TF + S LY R+ P F+ P++AG SG+ F++ D
Sbjct: 67 FRYKTNLYKLREDRAIEPETFTQLVSSSLYERRF-GPYFVGPVVAGINSKSGKPFIAGFD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC DF+ G+A + + G+ ES ++P L PE LFE SQ ++ A +RD SGWGA
Sbjct: 126 LIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAVDRDALSGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY+++ DKV R + R D
Sbjct: 186 VVYIIKKDKVVKRYLKMRQD 205
>gi|212537585|ref|XP_002148948.1| proteasome component Pup3, putative [Talaromyces marneffei ATCC
18224]
gi|210068690|gb|EEA22781.1| proteasome component Pup3, putative [Talaromyces marneffei ATCC
18224]
Length = 206
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 106/200 (53%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA VAM GK+C AI D L T++ K+ +P YL GL D ++
Sbjct: 8 NGGACVAMVGKDCVAIACDLRLGMQALTVSNNFPKIFNYAPSTYLGITGLATDVTTVSDL 67
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ Y E+ ISP T A + S LY R+ P F++P+IAG +G+ F+ D
Sbjct: 68 FRYKVNMYRLREERHISPQTLANLVSSSLYERRF-GPYFVSPVIAGINHTTGKPFICGFD 126
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
GC DF+ G+A + + G E W+P L P+ LFE SQ ++ A +RD SGWGA
Sbjct: 127 SIGCIDFAKDFIVSGTASDQLFGTCEGLWEPDLGPDDLFETISQALLNAVDRDALSGWGA 186
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY++E DKVT R + R D
Sbjct: 187 NVYIIEKDKVTKRLLKGRQD 206
>gi|225710324|gb|ACO11008.1| Proteasome subunit beta type-3 [Caligus rogercresseyi]
Length = 205
Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 116/200 (58%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G A+VAM GK+C AI D TI K +M P LY+ GL D +K
Sbjct: 7 NGSAVVAMKGKDCVAIASDLRFGSNLHTIMTDFPKTFEMGPGLYVGLAGLATDIQTVHQK 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+T R + E + P TF+ + S LY R+ P F+NPI+AG+ + F+S +D
Sbjct: 67 LTFRKKMFELREGRQMRPKTFSEMLSSLLYERRF-GPFFVNPIVAGYDYVENKPFISGMD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ G T DFVA G++++ ++G+ E+ W +SP++LFE SQ ++ + +RD+ +GWGA
Sbjct: 126 LIGASTIPEDFVASGTSEDTLVGMCEALWFEDMSPDELFEAISQALMNSFDRDSLAGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
V+++E +VT R++ TRMD
Sbjct: 186 EVHIIEKHQVTTRRLKTRMD 205
>gi|340369178|ref|XP_003383125.1| PREDICTED: proteasome subunit beta type-3-like [Amphimedon
queenslandica]
Length = 206
Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 112/201 (55%), Gaps = 3/201 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
+G A+V M G C AI D L +QG TIA +K++ M+ LY+ GL D + +
Sbjct: 8 NGSAVVGMIGSGCVAIAADRRLGIQGQ-TIATTFDKIYPMNESLYIGFYGLATDALTVSS 66
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
++ + Y E I P F + S LY+++ F+ P+IAG P + + +++T+
Sbjct: 67 RLKYQLNLYQLRENRQIKPKAFMHMTSNLLYSKRF-GYYFVEPVIAGLDPVTKDPYIATM 125
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWG 183
D+ GC DFV G+ + G+ ES W+P L PE LFE SQ ++ A +RD SGWG
Sbjct: 126 DLIGCPMETKDFVVVGTCSEQLYGMCESLWKPDLEPEDLFETISQALMNAVDRDALSGWG 185
Query: 184 ATVYVVEPDKVTIRKIATRMD 204
A V+V+E DKVT R + RMD
Sbjct: 186 AIVHVIEKDKVTTRTLKARMD 206
>gi|367001775|ref|XP_003685622.1| hypothetical protein TPHA_0E00940 [Tetrapisispora phaffii CBS 4417]
gi|357523921|emb|CCE63188.1| hypothetical protein TPHA_0E00940 [Tetrapisispora phaffii CBS 4417]
Length = 205
Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 108/200 (54%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG +VAMAGK+C AI D L ++ K+ H++ GL D E
Sbjct: 8 NGGIVVAMAGKDCVAIACDLRLGSQSLGVSNNFEKIFNYG-HVFFGITGLATDVTTLNEV 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+T Y E+ PI P+TF + S LY ++ P F+ P++AG SG+ F++ D
Sbjct: 67 FRYKTNLYKLKEERPIEPETFTQLVSSTLYEKRF-GPYFVGPVVAGINSKSGKPFIAGFD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC DF+ G+A + + G+ ES ++P L E LFE SQ ++ A +RD SGWGA
Sbjct: 126 LIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEAEDLFETISQALLSAADRDALSGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY+++ DKV R + TR D
Sbjct: 186 VVYIIKKDKVIKRHLRTRQD 205
>gi|170583083|ref|XP_001896421.1| proteasome subunit beta type 3 [Brugia malayi]
gi|158596348|gb|EDP34705.1| proteasome subunit beta type 3, putative [Brugia malayi]
Length = 205
Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 109/199 (54%), Gaps = 1/199 (0%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
GG I+AMAG +C I D L + TIA KVH++ +Y+ G +D +K+
Sbjct: 8 GGTILAMAGNDCVCIASDLRLGEQMTTIATNMKKVHKLGEKVYIGLGGFHSDAKTVLDKI 67
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
T R Y E I P+ A + S LY + F P+IAG P + + ++ +D
Sbjct: 68 TFRKNLYELRENRKIKPEVAAVMVSNLLYQHRF-GGYFTEPLIAGLDPTTNKPYICAMDT 126
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
GC + DFVA G+ ++G+ E FW+ G++P++LFE +Q ++ A ERD SGWGA
Sbjct: 127 IGCISAPNDFVAVGTGTEYLLGVCEGFWKEGMNPDELFEATAQSMLSAMERDAASGWGAI 186
Query: 186 VYVVEPDKVTIRKIATRMD 204
VY + DKV I+ I TRMD
Sbjct: 187 VYTITKDKVNIKTIKTRMD 205
>gi|367011527|ref|XP_003680264.1| hypothetical protein TDEL_0C01640 [Torulaspora delbrueckii]
gi|359747923|emb|CCE91053.1| hypothetical protein TDEL_0C01640 [Torulaspora delbrueckii]
Length = 205
Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 108/200 (54%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG +VAMAGK+C AI D L ++ K+ H++L GL D +E
Sbjct: 8 NGGIVVAMAGKDCVAIASDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLSET 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+T Y E PI P+TF + S LY R+ P F+ P++AG + + F++ D
Sbjct: 67 FRYKTNLYKLREDRPIEPETFTQLVSSTLYERRF-GPYFVGPVVAGINSKTEKPFIAGFD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC DF+ G+A + + G+ ES ++P L E LFE SQ ++ A +RD SGWGA
Sbjct: 126 LIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEAEDLFETISQALLNAADRDALSGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY+++ DKV R + TR D
Sbjct: 186 VVYIIKKDKVVKRYLKTRQD 205
>gi|225710512|gb|ACO11102.1| Proteasome subunit beta type-3 [Caligus rogercresseyi]
Length = 205
Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 116/200 (58%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G A+VAM GK+C AI D TI K +M P LY+ GL D +K
Sbjct: 7 NGSAVVAMKGKDCVAIASDLRFGSNLHTIMTDFPKTFEMGPGLYVGLAGLATDIQTVHQK 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+T R + E + P TF+ + S LY R+ P F+NPI+AG+ + F+S +D
Sbjct: 67 LTFRKKMFELREGRQMRPKTFSEMLSSLLYERRF-GPFFVNPIVAGYDYVENKPFISGMD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ G T DFVA G++++ ++G+ E+ W +SP++LFE SQ ++ + +RD+ +GWGA
Sbjct: 126 LIGASTIPEDFVASGTSEDSLVGMCEALWFEDMSPDELFEAISQALMNSFDRDSLAGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
V+++E +VT R++ TRMD
Sbjct: 186 EVHIIEKHQVTTRRLKTRMD 205
>gi|209733400|gb|ACI67569.1| Proteasome subunit beta type-3 [Salmo salar]
Length = 205
Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 109/205 (53%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GK C AI D VQ +++ K+ M LY+ GL D
Sbjct: 4 MSYN-GGAVMAMKGKQCVAIAADRRFGVQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
++++ R Y E I P TF ++ S LY R+ P +I P+IAG P + E F
Sbjct: 62 TVSQRLKFRLNLYELKEGRQIKPKTFMSMVSNLLYERRF-GPYYIEPVIAGLDPKTFEPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + G+ ES W+P + PE LFE SQ ++ A +RD
Sbjct: 121 ICSLDLIGCPMVTKDFVVSGTCSEQMYGMCESLWEPDMEPEDLFETISQAMLNAVDRDAV 180
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G V +E DK+T R + RMD
Sbjct: 181 SGMGVVVQAIEKDKITTRTLKARMD 205
>gi|295672716|ref|XP_002796904.1| proteasome component PUP3 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226282276|gb|EEH37842.1| proteasome component PUP3 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 206
Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 106/200 (53%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA VAM GK+C AI D L T++ K+ +P YL GL D ++
Sbjct: 8 NGGACVAMIGKDCVAIACDLRLGLQALTVSNNFPKIFNYAPSTYLGLTGLATDVSTVSDV 67
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ + Y E+ ISP T A + S LY ++ P F++P++AG +GE F+ D
Sbjct: 68 LRFKVNMYRLREERQISPQTLANLVSSSLYEKRF-GPYFVSPVLAGINNTTGEPFICGFD 126
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
GC DF+ G+A + G E W+P L PE LFE SQ ++ A +RD SGWGA
Sbjct: 127 SIGCIDFAKDFIVSGTASEQLFGTCEGLWEPDLGPEDLFETISQALLNAVDRDALSGWGA 186
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY++E DKVT R + R D
Sbjct: 187 HVYIIEKDKVTKRLLKGRQD 206
>gi|308321183|gb|ADO27744.1| proteasome subunit beta type-3 [Ictalurus furcatus]
Length = 205
Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 111/205 (54%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GK+C AI D +Q +++ K+ M LY+ GL D
Sbjct: 4 MSYN-GGAVMAMRGKDCVAIASDRRFGIQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
++++ R Y E I P TF ++ S LY R+ P +I P+IAG P + E F
Sbjct: 62 TVSQRLKFRLNLYELKEGRQIKPKTFMSMVSNLLYERRF-GPYYIEPVIAGLDPKTFEPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD GC DFV G+ + G+ ES W+P + PE LFE SQ ++ A +RD
Sbjct: 121 ICSLDQIGCPMITEDFVVSGTCAEQMYGMCESLWEPDMGPEDLFETISQAMLNAVDRDAV 180
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G V+V+E DK+T R + RMD
Sbjct: 181 SGMGVIVHVIEKDKITTRTLKARMD 205
>gi|302306791|ref|NP_983166.2| ABR217Cp [Ashbya gossypii ATCC 10895]
gi|299788687|gb|AAS50990.2| ABR217Cp [Ashbya gossypii ATCC 10895]
gi|374106369|gb|AEY95279.1| FABR217Cp [Ashbya gossypii FDAG1]
Length = 205
Score = 146 bits (369), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 108/200 (54%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG +VAM GK+C AI D L ++ K+ H++L GL D E
Sbjct: 8 NGGIVVAMTGKDCVAIACDLRLGSQSLGVSNRFEKIFNFG-HVFLGLTGLATDVTTLYET 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+T Y E PI P+TF+ + S LY R+ P F+ P++AG + + + +++ D
Sbjct: 67 FRYKTNMYKMQEDRPIEPNTFSQLVSSTLYERRF-GPYFVGPVVAGIHSKTKKPYIAGFD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC DF+ G+A + + G+ ES ++P L E LFE SQ ++ A +RD SGWGA
Sbjct: 126 LIGCIEESKDFIVSGTASDQLFGMCESLYEPNLESEDLFETISQALLNAADRDALSGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY++E D+V R + TR D
Sbjct: 186 VVYLIEKDRVVKRYLKTRQD 205
>gi|126308249|ref|XP_001371633.1| PREDICTED: proteasome subunit beta type-3-like [Monodelphis
domestica]
Length = 202
Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 111/205 (54%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GKNC AI D +Q +++ K+ M LY+ GL D
Sbjct: 1 MSYN-GGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 58
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
A+++ R Y E I P T ++ + LY ++ P + P+IAG +P + E F
Sbjct: 59 TVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRF-GPYYTEPVIAGLHPKTFEPF 117
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + G+ ES W+P + PE LFE SQ ++ A +RD
Sbjct: 118 ICSLDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPDMEPEHLFETISQAMLNAVDRDAV 177
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G V+++E DK+T R + RMD
Sbjct: 178 SGMGVIVHIIEKDKITTRTLKARMD 202
>gi|398394287|ref|XP_003850602.1| proteasome core particle subunit beta 3 [Zymoseptoria tritici
IPO323]
gi|339470481|gb|EGP85578.1| hypothetical protein MYCGRDRAFT_105064 [Zymoseptoria tritici
IPO323]
Length = 206
Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 106/200 (53%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA VAM GK+C AI D L T++ K+ +YL GL D +E
Sbjct: 8 NGGACVAMVGKDCVAIACDLRLGLQALTVSNNFPKIFSYGSSVYLGLTGLATDVSSVSEL 67
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ Y E+ ISP TF+ + S LY R+ P F++P++AG SG+ F+ D
Sbjct: 68 FRYKVNMYRLREERDISPKTFSNLVSSSLYERRF-GPWFVSPVVAGIDGTSGKPFICGFD 126
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
GC DF+ G+A + + G E W+P L PE LFE SQ ++ A +RD SGWGA
Sbjct: 127 SIGCIDFAKDFIVSGTASDQLFGTCEGLWEPDLGPEDLFETISQALLNAVDRDALSGWGA 186
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY++E DKVT R + R D
Sbjct: 187 HVYIIEKDKVTKRLLKGRQD 206
>gi|225705836|gb|ACO08764.1| Proteasome subunit beta type 3 [Oncorhynchus mykiss]
Length = 205
Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 110/205 (53%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM G+ C AI D VQ +++ K+ M LY+ GL D
Sbjct: 4 MSYN-GGAVMAMKGQQCVAIAADRRFGVQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
++++ R Y E I P TF ++ S LY R+ P +I P+IAG P + E F
Sbjct: 62 TVSQRLKFRLNLYELKEGRQIKPKTFMSMVSNLLYERRF-GPYYIEPVIAGLDPKTFEPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + G+ ES W+P + PE LFE SQ ++ A +RD
Sbjct: 121 ICSLDLIGCPMVTEDFVVSGTCSEQMYGMCESLWEPDMEPEDLFETISQAMLNAVDRDAI 180
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G V V+E DK+T R + RMD
Sbjct: 181 SGMGVVVQVIEKDKITARTLKARMD 205
>gi|299756258|ref|XP_002912180.1| proteasome subunit beta type 3 [Coprinopsis cinerea okayama7#130]
gi|298411595|gb|EFI28686.1| proteasome subunit beta type 3 [Coprinopsis cinerea okayama7#130]
Length = 205
Score = 146 bits (368), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 77/204 (37%), Positives = 108/204 (52%), Gaps = 4/204 (1%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG+++AM GK+C AI D L IA +V M+ +YL PGL D E
Sbjct: 3 HNGGSVIAMLGKDCVAIASDLRLGNQALGIASDFQRVFPMTDRIYLGLPGLATDVATLHE 62
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPD-SGEV--FL 120
+ R Y E I P+ FA + S LY R+ P F P++AG +G++ F+
Sbjct: 63 RFRFRVNMYTIKEGREIEPEVFAHLVSSTLYERRF-GPYFCEPVMAGISKTPTGKIKPFI 121
Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKS 180
+ D+ GC DFV G+A + G+ E W+P L PE LFE SQ ++ A +RD S
Sbjct: 122 AATDLIGCLNYAKDFVVAGTASAKLYGVAEGLWEPDLEPEDLFETISQTMLNAVDRDAFS 181
Query: 181 GWGATVYVVEPDKVTIRKIATRMD 204
GWGA V+V+ DKV R + RMD
Sbjct: 182 GWGAVVHVLTKDKVITRTLKGRMD 205
>gi|321249095|ref|XP_003191339.1| proteasome subunit beta type 3 [Cryptococcus gattii WM276]
gi|317457806|gb|ADV19552.1| Proteasome subunit beta type 3, putative [Cryptococcus gattii
WM276]
Length = 210
Score = 146 bits (368), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 110/209 (52%), Gaps = 7/209 (3%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQ 60
M LN GG++VAM GK+C AI D L IA +KV ++ LY PGL D
Sbjct: 4 MELN-GGSVVAMIGKDCVAIASDLRLGNQQVGIAANFDKVFPINDKLYCGLPGLATDVYT 62
Query: 61 FAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSG---- 116
E + R Y E+ I+P TF + S LY ++ P F+ P++AG +
Sbjct: 63 LREHLRFRVNMYRMKEEREITPKTFTHLLSSTLYEKRF-GPFFLEPVVAGLTTPTPLEPH 121
Query: 117 -EVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACE 175
+ ++ST+D GC T DF G+A + + GI E W+P L PE LFE SQ ++ A +
Sbjct: 122 PKPYISTMDTIGCITTPKDFAVAGTAADKLYGIAEGLWEPDLEPEDLFETISQTLLNAVD 181
Query: 176 RDTKSGWGATVYVVEPDKVTIRKIATRMD 204
RD SGWGA V ++ D+V R + RMD
Sbjct: 182 RDALSGWGAVVNIITHDQVITRTLRARMD 210
>gi|310793894|gb|EFQ29355.1| proteasome A-type and B-type [Glomerella graminicola M1.001]
Length = 205
Score = 145 bits (367), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 109/200 (54%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA VAM GK+C AI D L T++ K+ Q ++L GL D +
Sbjct: 8 NGGACVAMVGKDCVAIACDLRLGLQALTVSNNFPKIFQYG-DVFLGLTGLATDVTTVGDL 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ Y E+ I+P TFA + S LY R+ P F++P++AG P +G+ F+ D
Sbjct: 67 FRYKVNMYRLREERNIAPTTFANLVSSSLYERRF-GPYFVSPVVAGLDPKTGKPFICGFD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
GC DF+ G+A + G+ ES W+P L PE+LFE SQ ++ A +RD SGWGA
Sbjct: 126 SIGCIDFAKDFIVSGTASEQLFGMCESLWEPDLGPEELFETISQSLLNAVDRDALSGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY++E DKVT R + R D
Sbjct: 186 HVYIIEKDKVTKRLLKGRQD 205
>gi|50290063|ref|XP_447463.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526773|emb|CAG60400.1| unnamed protein product [Candida glabrata]
Length = 205
Score = 145 bits (367), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 106/200 (53%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG +VAMAGK+C AI D L ++ KV H++ GL D E
Sbjct: 8 NGGIVVAMAGKDCVAIACDLRLGNQSLGVSNNFEKVFNYG-HVFFGITGLATDVTTLNEL 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+T Y E PI P+TF + S LY R+ P F+ P++AG SG+ F++ D
Sbjct: 67 FRYKTNLYKLREDRPIEPETFTQLVSSTLYERRF-GPYFVGPVVAGINSKSGKPFIAGFD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC DF+ G+A + + G+ ES ++P L E LFE SQ ++ A +RD SGWGA
Sbjct: 126 LIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEAEDLFETISQALLNAADRDALSGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY+++ DKV R + R D
Sbjct: 186 VVYIIKKDKVVKRYLKMRQD 205
>gi|225706352|gb|ACO09022.1| Proteasome subunit beta type 3 [Osmerus mordax]
Length = 205
Score = 145 bits (367), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 111/205 (54%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GK C A+ D VQ +++ K+ M LY+ GL D
Sbjct: 4 MSYN-GGAVMAMRGKQCVAVAADRRFGVQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
++++ R Y E I P TF ++ S LY ++ P +I P+IAG P + E F
Sbjct: 62 TVSQRLKFRLNLYELKEGRQIKPKTFMSMVSNLLYEKRF-GPYYIEPVIAGLDPKTFEPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + G+ ES W+P + P+ LFE SQ ++ A +RD
Sbjct: 121 ICSLDLIGCPMVTEDFVVSGTCSEQMYGMCESLWEPDMEPDDLFETISQAMLNAVDRDAV 180
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G V+V+E DK+T R + RMD
Sbjct: 181 SGMGVVVHVIEKDKITTRTLKARMD 205
>gi|170085607|ref|XP_001874027.1| 20S proteasome subunit beta 3 [Laccaria bicolor S238N-H82]
gi|164651579|gb|EDR15819.1| 20S proteasome subunit beta 3 [Laccaria bicolor S238N-H82]
Length = 208
Score = 145 bits (367), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 107/203 (52%), Gaps = 4/203 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG++VAM GK+C AI D L I+ K+ ++ +YL PGL D E+
Sbjct: 7 NGGSVVAMVGKDCVAIASDLRLGNQALGISSNFQKIFPITDRIYLGLPGLATDVTTLRER 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGF--YPDSG-EVFLS 121
R Y E+ I P+TFA + S LY + P F+ P++AG P G + F++
Sbjct: 67 FRFRVNMYTIKEEREIEPETFAHLVSSTLYEHRF-GPYFVEPVMAGLSKTPSGGVKPFIA 125
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
D+ GC DFV G+A + + G+ E W+P L E LFE SQ ++ A +RD SG
Sbjct: 126 ATDLIGCLNFAKDFVVAGTASSKLYGVAEGLWEPDLEAEDLFETISQTLLNAVDRDAYSG 185
Query: 182 WGATVYVVEPDKVTIRKIATRMD 204
WG V+V+ DKV R + RMD
Sbjct: 186 WGCIVHVITKDKVVTRTLKGRMD 208
>gi|123449540|ref|XP_001313488.1| Family T1, proteasome beta subunit, threonine peptidase
[Trichomonas vaginalis G3]
gi|121895373|gb|EAY00559.1| Family T1, proteasome beta subunit, threonine peptidase
[Trichomonas vaginalis G3]
Length = 206
Score = 145 bits (367), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 113/204 (55%), Gaps = 1/204 (0%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQ 60
+S +G ++AMAG +C AI D L T+++ ++ Q++ +YL GL D +
Sbjct: 4 ISTYNGSCVLAMAGDHCVAIASDRRLGVNMLTVSKDFKRIFQINDRIYLGLAGLATDVLT 63
Query: 61 FAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFL 120
E++ E+ PI P F + LY ++ SP F+ P+IAG P++ E +L
Sbjct: 64 VREQLRFDVNLLELREERPIDPKKFMNLVKSTLYEKRF-SPFFVTPVIAGLLPETNEPYL 122
Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKS 180
+ D G DF G+ + + GI ES W+P ++P++LFE ++ +I A ERD+ S
Sbjct: 123 AASDSIGAFAFPKDFAVAGTCEESLYGICESAWRPNMNPDELFECTAKCLIAAVERDSIS 182
Query: 181 GWGATVYVVEPDKVTIRKIATRMD 204
GWG VY++ DKV I++I TRMD
Sbjct: 183 GWGGIVYIITQDKVIIKEIKTRMD 206
>gi|225705338|gb|ACO08515.1| Proteasome subunit beta type 3 [Oncorhynchus mykiss]
Length = 205
Score = 145 bits (366), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 109/205 (53%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GK C AI D VQ +++ K+ M LY+ GL D
Sbjct: 4 MSYN-GGAVMAMKGKQCVAIAADRRFGVQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
++++ R Y E I P TF ++ S LY R+ P +I P+IAG P + E F
Sbjct: 62 TVSQRLKFRLNLYELKEGRQIKPKTFMSMVSNLLYERRF-GPYYIEPVIAGLDPKTFEPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +L + GC DFV G+ + G+ ES W+P + PE LFE SQ ++ A +RD
Sbjct: 121 IRSLGLIGCPMVTEDFVVSGTCSEQMYGMCESLWEPDMEPEDLFETISQAMLNAVDRDAV 180
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G V V+E DK+T R + RMD
Sbjct: 181 SGMGVVVQVIEKDKITTRTLKARMD 205
>gi|392299798|gb|EIW10890.1| Pup3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 205
Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 107/200 (53%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG +VAM GK+C AI D L ++ K+ H++L GL D E
Sbjct: 8 NGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEM 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+T Y E+ I P+TF + S LY R+ P F+ P++AG SG+ F++ D
Sbjct: 67 FRYKTNLYKLKEERTIEPETFTQLVSSSLYERRF-GPYFVGPVVAGINSKSGKPFIAGFD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC DF+ G+A + + G+ ES ++P L PE LFE SQ ++ A +RD SGWGA
Sbjct: 126 LIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADRDALSGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY+++ D+V R + R D
Sbjct: 186 VVYIIKKDEVVKRYLKMRQD 205
>gi|3114278|pdb|1RYP|J Chain J, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
gi|3114292|pdb|1RYP|X Chain X, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
gi|11513421|pdb|1G65|I Chain I, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
gi|11513435|pdb|1G65|W Chain W, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
gi|20150385|pdb|1JD2|I Chain I, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
gi|20150392|pdb|1JD2|P Chain P, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
gi|93279376|pdb|2F16|I Chain I, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
gi|93279390|pdb|2F16|W Chain W, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
gi|99032210|pdb|2FAK|I Chain I, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
gi|99032224|pdb|2FAK|W Chain W, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
gi|112490851|pdb|2GPL|I Chain I, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
gi|112490865|pdb|2GPL|W Chain W, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
gi|190016375|pdb|3D29|I Chain I, Proteasome Inhibition By Fellutamide B
gi|190016389|pdb|3D29|W Chain W, Proteasome Inhibition By Fellutamide B
gi|197725329|pdb|3E47|I Chain I, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
gi|197725343|pdb|3E47|W Chain W, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
gi|211939220|pdb|3DY3|I Chain I, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
gi|211939234|pdb|3DY3|W Chain W, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
gi|211939248|pdb|3DY4|I Chain I, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
gi|211939262|pdb|3DY4|W Chain W, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
gi|238828245|pdb|3GPJ|I Chain I, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
gi|238828259|pdb|3GPJ|W Chain W, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
gi|258588329|pdb|3GPT|I Chain I, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
gi|258588343|pdb|3GPT|W Chain W, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
gi|258588357|pdb|3GPW|I Chain I, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
gi|258588371|pdb|3GPW|W Chain W, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
gi|258588551|pdb|3HYE|I Chain I, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
gi|258588565|pdb|3HYE|W Chain W, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
gi|298508231|pdb|1VSY|J Chain J, Proteasome Activator Complex
gi|298508245|pdb|1VSY|X Chain X, Proteasome Activator Complex
gi|298508447|pdb|3L5Q|N Chain N, Proteasome Activator Complex
gi|298508461|pdb|3L5Q|Z Chain Z, Proteasome Activator Complex
gi|330689389|pdb|3MG4|I Chain I, Structure Of Yeast 20s Proteasome With Compound 1
gi|330689403|pdb|3MG4|W Chain W, Structure Of Yeast 20s Proteasome With Compound 1
gi|333361152|pdb|3MG0|I Chain I, Structure Of Yeast 20s Proteasome With Bortezomib
gi|333361166|pdb|3MG0|W Chain W, Structure Of Yeast 20s Proteasome With Bortezomib
gi|335892349|pdb|3OKJ|I Chain I, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
gi|335892363|pdb|3OKJ|W Chain W, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
gi|340780427|pdb|3OEU|I Chain I, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
gi|340780441|pdb|3OEU|W Chain W, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
gi|340780455|pdb|3OEV|I Chain I, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
gi|340780469|pdb|3OEV|W Chain W, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
gi|350610680|pdb|3TDD|I Chain I, Crystal Structure Of Yeast Cp In Complex With Belactosin C
gi|350610694|pdb|3TDD|W Chain W, Crystal Structure Of Yeast Cp In Complex With Belactosin C
gi|359545854|pdb|3SHJ|I Chain I, Proteasome In Complex With Hydroxyurea Derivative Hu10
gi|359545868|pdb|3SHJ|W Chain W, Proteasome In Complex With Hydroxyurea Derivative Hu10
gi|390980824|pdb|3SDI|I Chain I, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
gi|390980838|pdb|3SDI|W Chain W, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
gi|390980852|pdb|3SDK|I Chain I, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
gi|390980866|pdb|3SDK|W Chain W, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
gi|402550740|pdb|4GK7|I Chain I, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
gi|402550754|pdb|4GK7|W Chain W, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
gi|409973868|pdb|4FZC|I Chain I, 20s Yeast Proteasome In Complex With Cepafungin I
gi|409973882|pdb|4FZC|W Chain W, 20s Yeast Proteasome In Complex With Cepafungin I
gi|409973896|pdb|4FZG|I Chain I, 20s Yeast Proteasome In Complex With Glidobactin
gi|409973910|pdb|4FZG|W Chain W, 20s Yeast Proteasome In Complex With Glidobactin
Length = 204
Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 107/200 (53%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG +VAM GK+C AI D L ++ K+ H++L GL D E
Sbjct: 7 NGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEM 65
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+T Y E+ I P+TF + S LY R+ P F+ P++AG SG+ F++ D
Sbjct: 66 FRYKTNLYKLKEERAIEPETFTQLVSSSLYERRF-GPYFVGPVVAGINSKSGKPFIAGFD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC DF+ G+A + + G+ ES ++P L PE LFE SQ ++ A +RD SGWGA
Sbjct: 125 LIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADRDALSGWGA 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY+++ D+V R + R D
Sbjct: 185 VVYIIKKDEVVKRYLKMRQD 204
>gi|398364611|ref|NP_011020.3| proteasome core particle subunit beta 3 [Saccharomyces cerevisiae
S288c]
gi|141337|sp|P25451.1|PSB3_YEAST RecName: Full=Proteasome subunit beta type-3; AltName:
Full=Macropain subunit PUP3; AltName:
Full=Multicatalytic endopeptidase complex subunit PUP3;
AltName: Full=Proteasome component PUP3
gi|11514000|pdb|1G0U|I Chain I, A Gated Channel Into The Proteasome Core Particle
gi|11514014|pdb|1G0U|W Chain W, A Gated Channel Into The Proteasome Core Particle
gi|14488814|pdb|1FNT|J Chain J, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
gi|14488828|pdb|1FNT|X Chain X, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
gi|75765708|pdb|1Z7Q|J Chain J, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
gi|75765722|pdb|1Z7Q|X Chain X, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
gi|178847468|pdb|2ZCY|I Chain I, Yeast 20s Proteasome:syringolin A-Complex
gi|178847482|pdb|2ZCY|W Chain W, Yeast 20s Proteasome:syringolin A-Complex
gi|178847510|pdb|3BDM|I Chain I, Yeast 20s Proteasome:glidobactin A-Complex
gi|178847524|pdb|3BDM|W Chain W, Yeast 20s Proteasome:glidobactin A-Complex
gi|323462944|pdb|3NZJ|I Chain I, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
gi|323462958|pdb|3NZJ|W Chain W, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
gi|323462972|pdb|3NZW|I Chain I, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
gi|323462986|pdb|3NZW|W Chain W, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
gi|323463000|pdb|3NZX|I Chain I, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
gi|323463014|pdb|3NZX|W Chain W, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
gi|333361180|pdb|3MG6|I Chain I, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
gi|333361194|pdb|3MG6|W Chain W, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
gi|333361208|pdb|3MG7|I Chain I, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
gi|333361222|pdb|3MG7|W Chain W, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
gi|333361236|pdb|3MG8|I Chain I, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
gi|333361250|pdb|3MG8|W Chain W, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
gi|378792249|pdb|3UN4|I Chain I, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
gi|378792263|pdb|3UN4|W Chain W, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
gi|378792283|pdb|3UN8|I Chain I, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
gi|378792297|pdb|3UN8|W Chain W, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
gi|403071956|pdb|4B4T|3 Chain 3, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
gi|403072200|pdb|4G4S|J Chain J, Structure Of Proteasome-Pba1-Pba2 Complex
gi|444302347|pdb|4INR|I Chain I, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
gi|444302361|pdb|4INR|W Chain W, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
gi|444302375|pdb|4INT|I Chain I, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
gi|444302389|pdb|4INT|W Chain W, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
gi|444302403|pdb|4INU|I Chain I, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
gi|444302417|pdb|4INU|W Chain W, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
gi|172337|gb|AAA34946.1| ORF1 [Saccharomyces cerevisiae]
gi|603332|gb|AAB64649.1| Pup3p [Saccharomyces cerevisiae]
gi|151944812|gb|EDN63071.1| 20S proteasome subunit beta3_sc [Saccharomyces cerevisiae YJM789]
gi|190405659|gb|EDV08926.1| proteasome component PUP3 [Saccharomyces cerevisiae RM11-1a]
gi|256271461|gb|EEU06515.1| Pup3p [Saccharomyces cerevisiae JAY291]
gi|259146019|emb|CAY79279.1| Pup3p [Saccharomyces cerevisiae EC1118]
gi|285811728|tpg|DAA07756.1| TPA: proteasome core particle subunit beta 3 [Saccharomyces
cerevisiae S288c]
gi|323305263|gb|EGA59010.1| Pup3p [Saccharomyces cerevisiae FostersB]
gi|323333773|gb|EGA75164.1| Pup3p [Saccharomyces cerevisiae AWRI796]
gi|323337981|gb|EGA79220.1| Pup3p [Saccharomyces cerevisiae Vin13]
gi|323355291|gb|EGA87116.1| Pup3p [Saccharomyces cerevisiae VL3]
gi|349577761|dbj|GAA22929.1| K7_Pup3p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365766114|gb|EHN07615.1| Pup3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 205
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 107/200 (53%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG +VAM GK+C AI D L ++ K+ H++L GL D E
Sbjct: 8 NGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEM 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+T Y E+ I P+TF + S LY R+ P F+ P++AG SG+ F++ D
Sbjct: 67 FRYKTNLYKLKEERAIEPETFTQLVSSSLYERRF-GPYFVGPVVAGINSKSGKPFIAGFD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC DF+ G+A + + G+ ES ++P L PE LFE SQ ++ A +RD SGWGA
Sbjct: 126 LIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADRDALSGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY+++ D+V R + R D
Sbjct: 186 VVYIIKKDEVVKRYLKMRQD 205
>gi|393222969|gb|EJD08453.1| 20S proteasome subunit beta 3 [Fomitiporia mediterranea MF3/22]
Length = 205
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 111/203 (54%), Gaps = 4/203 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG++VAM GK+C AI D L T+A KV ++ +YL GL D E+
Sbjct: 4 NGGSVVAMVGKDCVAIASDLRLGMQALTVACNHEKVFPVTDRIYLGLAGLATDVATLRER 63
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGF--YPD-SGEVFLS 121
R Y E+ ISP+TFA + S LY ++ + F+ P+IAG P+ + +++
Sbjct: 64 FRYRVNMYTIKEERDISPETFARLVSSTLYEKRFGN-YFVEPVIAGMGTAPNGKAQPYIA 122
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
D+ GC DFV G+A + + G+ E W+P L PE LFE SQ ++ A +RD SG
Sbjct: 123 AADVIGCLNFAKDFVVVGTASDKLFGVAEGLWEPDLEPEDLFETISQTLLNAVDRDAFSG 182
Query: 182 WGATVYVVEPDKVTIRKIATRMD 204
WGA V+V+ DKV R + RMD
Sbjct: 183 WGAVVHVITQDKVITRTLKGRMD 205
>gi|448107066|ref|XP_004200900.1| Piso0_003510 [Millerozyma farinosa CBS 7064]
gi|448110074|ref|XP_004201531.1| Piso0_003510 [Millerozyma farinosa CBS 7064]
gi|359382322|emb|CCE81159.1| Piso0_003510 [Millerozyma farinosa CBS 7064]
gi|359383087|emb|CCE80394.1| Piso0_003510 [Millerozyma farinosa CBS 7064]
Length = 206
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 77/204 (37%), Positives = 108/204 (52%), Gaps = 2/204 (0%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQ 60
SLN GG+ VAM GK+C AI D L ++ K+ Q +L GL D +
Sbjct: 5 FSLN-GGSAVAMVGKDCVAIASDLRLGNQSLGLSNNFEKIFQFGDKTFLGLTGLATDVIT 63
Query: 61 FAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFL 120
+E + Y E+ I P T A + S LY ++ P F++P++AG P S F+
Sbjct: 64 LSEVFRFKHNLYKLREERDIEPKTLANLVSSTLYEKRF-GPYFVSPLVAGLDPKSNVPFI 122
Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKS 180
D GC DF+ GG+A + + G+ ES ++P L PE LFE SQV++ A +RD S
Sbjct: 123 CGFDSIGCIDFAKDFIVGGTASDQLYGLCESLYEPSLEPEDLFETISQVLLNAVDRDALS 182
Query: 181 GWGATVYVVEPDKVTIRKIATRMD 204
GWGA VY+V DK+ R + TR D
Sbjct: 183 GWGAVVYIVTKDKIIRRVLKTRQD 206
>gi|307109788|gb|EFN58025.1| hypothetical protein CHLNCDRAFT_48590 [Chlorella variabilis]
Length = 204
Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 108/200 (54%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G AIVAMAGK C AIG D T+A KV+++ L++ GL D +++
Sbjct: 7 NGSAIVAMAGKECVAIGSDLRFGVQLQTLATDYKKVYKIHDQLFIGLAGLGTDAETLSQR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ Y E+ I P F + S LY R+ P F P+IAG PD G +L +D
Sbjct: 67 FAFKHNLYKLREERDIKPSAFGQLVSATLYERRF-GPYFCQPVIAGLEPD-GSPYLCGMD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G + DF+ G+A + ++GI ES W+P L PE+LFE SQ ++ +RD +GWGA
Sbjct: 125 SIGAQETAKDFMVAGTATDSLLGICESLWRPDLGPEELFETLSQALLSGQDRDCLAGWGA 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VYV+ DKV R + RMD
Sbjct: 185 VVYVITKDKVIARTLKGRMD 204
>gi|119175342|ref|XP_001239915.1| conserved hypothetical protein [Coccidioides immitis RS]
gi|303314835|ref|XP_003067426.1| proteasome component, putative [Coccidioides posadasii C735 delta
SOWgp]
gi|240107094|gb|EER25281.1| proteasome component, putative [Coccidioides posadasii C735 delta
SOWgp]
gi|320037775|gb|EFW19712.1| proteasome component PUP3 [Coccidioides posadasii str. Silveira]
gi|392870109|gb|EAS27268.2| proteasome component PUP3 [Coccidioides immitis RS]
Length = 206
Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 108/200 (54%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA VAM GK+C AI D L T++ K+ +P YL GL D ++
Sbjct: 8 NGGACVAMVGKDCVAIACDLRLGMQALTVSNNFPKIFNYAPSTYLGLTGLATDVASVSDL 67
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ + Y E+ I+P T A + S LY ++ P F++P++AG +G+ F+ D
Sbjct: 68 LRYKVNLYRLREERQIAPQTLANLVSSSLYEKRF-GPWFVSPVLAGINHTTGKPFICGFD 126
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
GC DF+ G+A + + G+ E W+P L PE LFE SQ ++ A +RD SGWGA
Sbjct: 127 SIGCIDFAKDFIVSGTASDQLFGMCEGLWEPDLGPEDLFETISQALLNAVDRDALSGWGA 186
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY++E DKVT R + R D
Sbjct: 187 HVYIIEKDKVTKRLLKGRQD 206
>gi|145256886|ref|XP_001401548.1| proteasome component PUP3 [Aspergillus niger CBS 513.88]
gi|134058458|emb|CAL00667.1| unnamed protein product [Aspergillus niger]
gi|358366039|dbj|GAA82660.1| proteasome component Pup3 [Aspergillus kawachii IFO 4308]
Length = 206
Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 105/200 (52%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA VAM GK+C AI D L T++ K+ P +L GL D ++
Sbjct: 8 NGGACVAMVGKDCVAIACDLRLGMQALTVSNNFPKIFNYGPSTFLGLTGLATDVSTVSDL 67
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ Y E+ I+P T A + S LY ++ P F++P+IAG +G+ F+ D
Sbjct: 68 FRYKVNMYRLREERNIAPQTLANLVSSSLYEKRF-GPFFVSPVIAGINSTTGKPFICGFD 126
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
GC DF+ G+A + G E W+P LSPE LFE SQ ++ A +RD SGWGA
Sbjct: 127 SIGCIDFAKDFIVSGTASEQLFGTCEGLWEPDLSPEDLFETISQALLSAVDRDALSGWGA 186
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY++E DKVT R + R D
Sbjct: 187 QVYIIEKDKVTKRLLKGRQD 206
>gi|225713992|gb|ACO12842.1| Proteasome subunit beta type-3 [Lepeophtheirus salmonis]
gi|290463059|gb|ADD24577.1| Proteasome subunit beta type-3 [Lepeophtheirus salmonis]
Length = 205
Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 116/200 (58%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G A++AM G +C +I D T+ K +M P L++ GL D +K
Sbjct: 7 NGSAVLAMKGNDCVSIASDLRFGINRHTVMTDFPKTFEMGPGLFVGLAGLATDIQTVQQK 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R + E + P+TF+ + S LY R+ P F+NPI+AG+ + F+S++D
Sbjct: 67 LNFRMKMFELREGRKMRPNTFSTMLSHLLYERRF-GPFFVNPIVAGYDYVENKPFISSMD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ G T DFVA G++++ +MG+ E+ W ++PE+LFE SQ ++ + +RD+ +GWGA
Sbjct: 126 LIGAITIPEDFVAAGTSEDSLMGMCEALWFENMNPEELFEATSQAIMNSFDRDSLAGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
V+++E +VT R+I TRMD
Sbjct: 186 EVHIIEKHQVTTRRIKTRMD 205
>gi|255712483|ref|XP_002552524.1| KLTH0C06886p [Lachancea thermotolerans]
gi|238933903|emb|CAR22086.1| KLTH0C06886p [Lachancea thermotolerans CBS 6340]
Length = 205
Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 106/200 (53%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG +VAM GK+C AI D L +A K+ H++L GL D +E
Sbjct: 8 NGGIVVAMTGKDCVAIACDLRLGSQSLGVANNFEKIFHYG-HVFLGLTGLATDVTTLSET 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+T Y E I P+TF + S LY ++ P F P++AG +G+ ++S D
Sbjct: 67 FRYKTNMYKLKEDRFIEPETFTQLVSSTLYEKRF-GPYFTGPVVAGINSRTGKPYISGFD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC DFV G+A + G+ ES ++P L PE LFE SQ ++ A +RD SGWGA
Sbjct: 126 LIGCIDEAKDFVVSGTASEQLFGMCESLYEPNLEPEDLFETISQALLNAADRDALSGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY+++ DKV R + TR D
Sbjct: 186 AVYIIKKDKVIKRYLKTRQD 205
>gi|351706755|gb|EHB09674.1| Proteasome subunit beta type-3 [Heterocephalus glaber]
Length = 217
Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 110/205 (53%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GKNC AI D +Q +++ K+ M LY+ GL D
Sbjct: 16 MSYN-GGAVMAMKGKNCVAIAADKRFGIQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 73
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
A+++ R Y E I P T ++ + LY R+ P + P+IAG P + + F
Sbjct: 74 TVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYERRF-GPYYTEPVIAGLDPKTFKPF 132
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + G+ ES W+P + PE LFE SQ ++ A +RD
Sbjct: 133 ICSLDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAV 192
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G V+V+E DK+T R + RMD
Sbjct: 193 SGMGVVVHVIEKDKITTRTLKARMD 217
>gi|402077481|gb|EJT72830.1| proteasome component PUP3 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 205
Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 108/200 (54%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA VAM GK+C AI D L T++ K+ Q ++L GL D ++
Sbjct: 8 NGGAAVAMVGKDCVAIACDLRLGMQALTVSNNFPKIFQYG-DVFLGLTGLATDVSTVSDL 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ Y E+ I+P TFA + S LY R+ P F++P++AG P + + F+ D
Sbjct: 67 FRYKVNMYRLREERNIAPRTFANLVSSSLYERRF-GPYFVSPVVAGLDPKTSQPFICGFD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
GC DF+ G+A + G+ ES W+P L PE LFE SQ ++ A +RD SGWGA
Sbjct: 126 SIGCIDFAKDFIVSGTASEQLFGMCESLWEPNLEPEDLFETISQALLSAVDRDALSGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY++E DKVT R + R D
Sbjct: 186 HVYIIEKDKVTKRLLKGRQD 205
>gi|380481881|emb|CCF41580.1| proteasome component PUP3 [Colletotrichum higginsianum]
Length = 205
Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 109/200 (54%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA VAM GK+C AI D L T++ K+ Q ++L GL D +
Sbjct: 8 NGGACVAMVGKDCVAIACDLRLGLQALTVSNNFPKIFQYG-DVFLGLTGLATDVTTVGDL 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ Y E+ I+P TFA + S LY R+ P F++P++AG P +G+ F+ D
Sbjct: 67 FRYKVNMYRLREERNIAPTTFANLVSSSLYERRF-GPYFVSPVVAGLDPKTGKPFICGFD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
GC DF+ G+A + G+ ES W+P L P++LFE SQ ++ A +RD SGWGA
Sbjct: 126 SIGCIDFAKDFIVSGTASEQLFGMCESLWEPDLGPDELFETISQSLLNAVDRDALSGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY++E DKVT R + R D
Sbjct: 186 HVYIIEKDKVTKRLLKGRQD 205
>gi|453082236|gb|EMF10284.1| N-terminal nucleophile aminohydrolase [Mycosphaerella populorum
SO2202]
Length = 206
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 105/200 (52%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA VAM GK+C AI D L T++ K+ YL GL D +E
Sbjct: 8 NGGACVAMVGKDCVAIACDLRLGLQALTVSNNFPKIFPFGSSTYLGLTGLATDVSTVSEL 67
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ Y E+ ISP TFA + S LY ++ P FI+P++AG +G+ F+ D
Sbjct: 68 FRYKVNMYRLREERDISPRTFANLVSSSLYEKRF-GPWFISPVVAGLDSKTGKPFICGFD 126
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
GC DF+ G+A + + G E W+P L PE LFE SQ ++ A +RD SGWGA
Sbjct: 127 SIGCIDFAKDFIVAGTASDQLFGTCEGLWEPDLGPEDLFETMSQALLSAVDRDALSGWGA 186
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY++E DKVT R + R D
Sbjct: 187 HVYIIEKDKVTKRLLKGRQD 206
>gi|68489003|ref|XP_711658.1| hypothetical protein CaO19.8916 [Candida albicans SC5314]
gi|46432977|gb|EAK92436.1| hypothetical protein CaO19.8916 [Candida albicans SC5314]
Length = 206
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 104/200 (52%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA VAM GK C AIG D L Q ++ K+ + +L GL D + E
Sbjct: 8 NGGAAVAMIGKGCIAIGSDLRLGQQSLGVSNNFEKIFSVGDKTFLGLTGLATDVISLKEL 67
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+T Y E+ I P T A + S LY R+ P F++PI+AG + F+ D
Sbjct: 68 FRFKTNLYKLREERNIEPSTLANLVSSSLYERRF-GPWFVSPIVAGLSSKDNKPFICGFD 126
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
GC DF+ G+A + + G+ ES ++P L PE LFE SQ ++ A +RD SGWGA
Sbjct: 127 SIGCIDFSHDFIVSGTASDQLYGMCESLYEPNLEPEDLFETISQALLNAVDRDALSGWGA 186
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY+V DKV R + TR D
Sbjct: 187 VVYIVTKDKVIKRVLKTRQD 206
>gi|336376544|gb|EGO04879.1| hypothetical protein SERLA73DRAFT_173986 [Serpula lacrymans var.
lacrymans S7.3]
gi|336389555|gb|EGO30698.1| hypothetical protein SERLADRAFT_454981 [Serpula lacrymans var.
lacrymans S7.9]
Length = 208
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 108/203 (53%), Gaps = 4/203 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG+++AM GK+C AI D L +I+ KV ++ +Y+ PGL D E+
Sbjct: 7 NGGSVIAMVGKDCVAIASDLRLGNQALSISSNFQKVFPVTDRIYVGLPGLGTDVTTLRER 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGF--YPDSG-EVFLS 121
R Y E+ I P+TFA + S LY + P FI P+IAG P G + ++
Sbjct: 67 FRYRINMYTIKEEREIEPETFAHLVSSTLYEHRF-GPYFIEPVIAGLSKTPSGGVKPLIA 125
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
D+ GC DFV G+A ++G+ E W+P L PE LFE SQ ++ + +RD SG
Sbjct: 126 AADLIGCLNFAKDFVVAGTASTKLLGVAEGLWEPDLEPEDLFETISQTLLNSVDRDAFSG 185
Query: 182 WGATVYVVEPDKVTIRKIATRMD 204
WGA V+V+ D + R + RMD
Sbjct: 186 WGAVVHVITKDSIISRTLKGRMD 208
>gi|392597640|gb|EIW86962.1| 20S proteasome subunit beta 3 [Coniophora puteana RWD-64-598 SS2]
Length = 208
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 109/203 (53%), Gaps = 4/203 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG+++AM GK+C AI D L I+ KV ++ +Y+ GL D + E+
Sbjct: 7 NGGSVIAMVGKDCVAIASDLRLGNQALGISSNFQKVFPVTDRIYVGLAGLGTDVITLRER 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGF--YPDSG-EVFLS 121
R Y E+ I P+TFA + S LY + P FI P++AG P G + F++
Sbjct: 67 FRYRVNMYTIKEEREIEPETFAHLVSSTLYEHRF-GPYFIEPVVAGLSKTPSGGLKPFIA 125
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
D+ GC DFV G+A + + G+ E W+P L PE LFE SQ ++ A +RD SG
Sbjct: 126 ATDLIGCINFAKDFVVSGTASSKLFGLAEGLWEPDLEPEDLFETISQTLLNAVDRDAYSG 185
Query: 182 WGATVYVVEPDKVTIRKIATRMD 204
WGA V+V+ DK+ R + RMD
Sbjct: 186 WGAVVHVLTKDKIISRTLKGRMD 208
>gi|348562309|ref|XP_003466953.1| PREDICTED: proteasome subunit beta type-3-like [Cavia porcellus]
Length = 202
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 110/205 (53%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GKNC AI D +Q +++ K+ M LY+ GL D
Sbjct: 1 MSYN-GGAVMAMKGKNCVAIAADKRFGIQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 58
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
A+++ R Y E I P T ++ + LY R+ P + P+IAG P + + F
Sbjct: 59 TVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYERRF-GPYYTEPVIAGLDPKTFQPF 117
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + G+ ES W+P + PE LFE SQ ++ A +RD
Sbjct: 118 ICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAV 177
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G V+V+E DK+T R + RMD
Sbjct: 178 SGMGVIVHVIEKDKITTRTLKARMD 202
>gi|301762874|ref|XP_002916854.1| PREDICTED: proteasome subunit beta type-3-like [Ailuropoda
melanoleuca]
Length = 202
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 110/205 (53%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GKNC AI D +Q +++ K+ M LY+ GL D
Sbjct: 1 MSYN-GGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 58
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
A+++ R Y E I P T ++ + LY R+ P + P+IAG P + + F
Sbjct: 59 TVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYERRF-GPYYTEPVIAGLDPKTFKPF 117
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + G+ ES W+P + PE LFE SQ ++ A +RD
Sbjct: 118 ICSLDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAV 177
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G V+++E DK+T R + RMD
Sbjct: 178 SGMGVIVHIIEKDKITTRTLKARMD 202
>gi|410084182|ref|XP_003959668.1| hypothetical protein KAFR_0K01790 [Kazachstania africana CBS 2517]
gi|372466260|emb|CCF60533.1| hypothetical protein KAFR_0K01790 [Kazachstania africana CBS 2517]
Length = 205
Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 106/200 (53%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG +VAMAGK+C AI D L ++ K+ H++ GL D E
Sbjct: 8 NGGIVVAMAGKDCVAIACDLRLGSQSLGVSNNFEKIFNYE-HVFFGITGLATDVTTLNEV 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+T Y E I P+TFA + S LY R+ P F+ P++AG SG+ F++ D
Sbjct: 67 FRYKTNLYKLKEDRAIEPETFAQLVSSTLYERRF-GPYFVGPVVAGINSKSGKPFIAGFD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC DF+ G+A + + G+ ES ++P L E LFE SQ ++ A +RD SGWGA
Sbjct: 126 LIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEAEDLFETISQALLNAADRDALSGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY+++ DKV R + R D
Sbjct: 186 VVYIIKKDKVIKRNLRMRQD 205
>gi|146414175|ref|XP_001483058.1| hypothetical protein PGUG_05013 [Meyerozyma guilliermondii ATCC
6260]
Length = 205
Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 105/200 (52%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA VAM GK+C AI D L +A KV QM +L GL D + E
Sbjct: 8 NGGAAVAMVGKDCIAIACDTRLGSQSLGLANNFEKVFQMGKTTFLGLTGLATDVITLRED 67
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
L+ Y E+ + P T A + S LY R+ P F++PI+AG G+ F+ D
Sbjct: 68 FRLKNNLYKLREEREMEPKTLANLVSTSLYERRF-GPYFVSPIVAGL-GKGGQPFICGFD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC DF+ G+A + + G ES ++P L PE LFE SQ ++ A +RD SGWGA
Sbjct: 126 LIGCIDFAKDFIVSGTASDQLYGTCESLYEPNLEPEDLFETISQALLNAVDRDALSGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VYVV +KV R + TR D
Sbjct: 186 VVYVVTKEKVVRRVLRTRQD 205
>gi|402589044|gb|EJW82976.1| proteasome subunit beta type [Wuchereria bancrofti]
Length = 205
Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 108/199 (54%), Gaps = 1/199 (0%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
GG I+AMAG +C I D L + TIA KVH++ +Y+ G +D +K+
Sbjct: 8 GGTILAMAGNDCVCIASDLRLGEQMTTIATNMKKVHKLGEKVYIGLGGFNSDAKTVLDKI 67
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
T R Y E I P+ A + S LY + F P+IAG P + + ++ +D
Sbjct: 68 TFRKNLYELRENRKIKPEVTAVMVSNLLYQHRF-GGYFTEPLIAGLDPTTNKPYICAMDT 126
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
GC + DFVA G+ ++G+ E FW+ ++P++LFE +Q ++ A ERD SGWGA
Sbjct: 127 IGCISAPNDFVAVGTGTEYLLGVCEGFWKEDMNPDELFEATAQSMLSAMERDAASGWGAI 186
Query: 186 VYVVEPDKVTIRKIATRMD 204
VY + DKV I+ I TRMD
Sbjct: 187 VYTITKDKVNIKTIKTRMD 205
>gi|148677981|gb|EDL09928.1| mCG1283 [Mus musculus]
Length = 205
Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 110/201 (54%), Gaps = 3/201 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
+GGA++AM GKNC AI D +Q +++ K+ + LY+ GL D A+
Sbjct: 7 NGGAVMAMKGKNCVAIAADRCFGIQAQMVTTDFQ-KIFALGDRLYIGLAGLATDIQTVAQ 65
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
++ R Y+ E I P T ++ + LY ++ P + P+IAG P + ++F+ +L
Sbjct: 66 RLKFRLNLYMLKEGRHIKPFTLMSMVANLLYEKRF-GPYYTEPVIAGLDPKTFKLFICSL 124
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWG 183
D+ GC DFV G+ + G+ ES W+P + PE LFE SQ ++ A +RD SG G
Sbjct: 125 DLIGCPMVTDDFVVSGTCSEQMHGMCESLWEPHMDPEHLFETISQAMLNAVDRDAMSGMG 184
Query: 184 ATVYVVEPDKVTIRKIATRMD 204
V+V+E DK+T R + RMD
Sbjct: 185 VIVHVIEKDKITTRTLKARMD 205
>gi|222136592|ref|NP_001138374.1| proteasome subunit beta type-3 [Sus scrofa]
Length = 205
Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 110/205 (53%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GKNC AI D +Q +++ K+ M LY+ GL D
Sbjct: 4 MSYN-GGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
A+++ R Y E I P T ++ + LY R+ P + P+IAG P + + F
Sbjct: 62 TVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYERRF-GPYYTEPVIAGLDPKTFKPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + G+ ES W+P + PE LFE SQ ++ A +RD
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCTEQMYGMCESLWEPDMDPEHLFETISQAMLNAVDRDAV 180
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G V+V+E DK+T R + RMD
Sbjct: 181 SGMGVIVHVIEKDKITTRTLKARMD 205
>gi|225703360|gb|ACO07526.1| Proteasome subunit beta type 3 [Oncorhynchus mykiss]
Length = 205
Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 109/205 (53%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GK C AI D VQ +++ K+ M L++ GL D
Sbjct: 4 MSYN-GGAVMAMKGKQCVAIAADRRFGVQAQVVTTDFQ-KIFPMGDRLHIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
++++ R Y E I P TF ++ S LY R+ P +I P+IAG P + E F
Sbjct: 62 TVSQRLKFRLNLYELKEGRQIKPKTFMSMVSNLLYERRF-GPYYIEPVIAGLDPKTFEPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + G+ ES W+P + PE LFE SQ ++ A RD
Sbjct: 121 ICSLDLIGCPMVTEDFVVSGTCSEQMYGMCESLWEPDMEPEDLFETISQAMLNAVGRDAV 180
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G V V+E DK+T R + RMD
Sbjct: 181 SGMGVVVQVIEKDKITTRTLKARMD 205
>gi|451992642|gb|EMD85122.1| hypothetical protein COCHEDRAFT_1149474 [Cochliobolus
heterostrophus C5]
Length = 205
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/200 (39%), Positives = 106/200 (53%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
DGGA VAM GK+C AI D L T++ K+ Q ++L GL D ++
Sbjct: 8 DGGACVAMVGKDCVAIACDLRLGMQALTVSNNFPKIFQYG-DVFLGLTGLATDVSTVSDL 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ Y E+ ISP T A + S LY R+ P FI+P+IAG SG+ F+ D
Sbjct: 67 FRYKVNMYRLREERNISPQTMANLVSSSLYERRF-GPYFISPVIAGINQTSGKPFICGFD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
GC DF+ G+A + + G E W+P L PE LFE SQ ++ A +RD SGWGA
Sbjct: 126 SIGCIDFAKDFIVSGTASDQLFGTCEGLWEPDLGPEDLFETISQALLNAVDRDALSGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY++E DKVT R + R D
Sbjct: 186 HVYIIEKDKVTKRLLKGRQD 205
>gi|338710899|ref|XP_001501618.2| PREDICTED: proteasome subunit beta type-3-like [Equus caballus]
Length = 205
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 110/205 (53%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GKNC AI D +Q +++ K+ M LY+ GL D
Sbjct: 4 MSYN-GGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
A+++ R Y E I P T ++ + LY ++ P + P+IAG P + + F
Sbjct: 62 TVAQRLKFRLNLYELKEGRQIKPQTLMSMVANLLYEKRF-GPYYTEPVIAGLDPKTFKPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + G+ ES W+P + PE LFE SQ ++ A +RD
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCTEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAV 180
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G V+++E DK+T R + RMD
Sbjct: 181 SGMGVIVHIIEKDKITTRTLKARMD 205
>gi|365761090|gb|EHN02766.1| Pup3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401841875|gb|EJT44194.1| PUP3-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 205
Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 106/200 (53%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG +VAM GK+C AI D L ++ K+ H++L GL D E
Sbjct: 8 NGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEM 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+T Y E+ I P+TF + S LY R+ P F+ P++AG SG+ F++ D
Sbjct: 67 FRYKTNLYKLREERAIEPETFTQLVSSSLYERRF-GPYFVGPVVAGINSKSGKPFIAGFD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC DF+ G+A + + G+ ES ++P L E LFE SQ ++ A +RD SGWGA
Sbjct: 126 LIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLESEDLFETISQALLNAADRDALSGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY+++ DKV R + R D
Sbjct: 186 AVYIIKKDKVVKRYLKMRQD 205
>gi|366989209|ref|XP_003674372.1| hypothetical protein NCAS_0A14350 [Naumovozyma castellii CBS 4309]
gi|342300235|emb|CCC67993.1| hypothetical protein NCAS_0A14350 [Naumovozyma castellii CBS 4309]
Length = 205
Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 106/200 (53%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG +VAM GK+C AI D L ++ K+ H++L GL D +E
Sbjct: 8 NGGIVVAMTGKDCVAIACDLRLGSQSLGVSNNFEKIFHYG-HVFLGLTGLATDVTTLSET 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+T Y E PI PDTF + S LY ++ P F+ P++AG + + F++ D
Sbjct: 67 FRYKTNLYKLKEDRPIEPDTFIQLVSTTLYEKRF-GPYFVGPVVAGINSQTEKPFIAGFD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC DF+ G+A + + G+ ES ++P L E LFE SQ ++ A +RD SGWGA
Sbjct: 126 LIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLESEDLFETISQALLNAADRDALSGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY+++ DKV R + R D
Sbjct: 186 VVYIIKKDKVVKRHLKMRQD 205
>gi|426348535|ref|XP_004041889.1| PREDICTED: proteasome subunit beta type-3 [Gorilla gorilla gorilla]
Length = 205
Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 110/205 (53%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GKNC AI D +Q +++ K+ M LY+ GL D
Sbjct: 4 MSYN-GGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
A+++ R Y E I P T ++ + LY ++ P + P+IAG P + + F
Sbjct: 62 TVAQRLKFRLNLYELKEGRQIKPHTLMSMVANLLYEKRF-GPYYTEPVIAGLDPKTFKPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + G+ ES W+P + PE LFE SQ ++ A +RD
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAV 180
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G V+++E DK+T R + RMD
Sbjct: 181 SGMGVIVHIIEKDKITTRTLKARMD 205
>gi|6755202|ref|NP_036101.1| proteasome subunit beta type-3 [Mus musculus]
gi|9910831|sp|Q9R1P1.1|PSB3_MOUSE RecName: Full=Proteasome subunit beta type-3; AltName:
Full=Proteasome chain 13; AltName: Full=Proteasome
component C10-II; AltName: Full=Proteasome theta chain
gi|378792311|pdb|3UNB|I Chain I, Mouse Constitutive 20s Proteasome In Complex With Pr-957
gi|378792325|pdb|3UNB|W Chain W, Mouse Constitutive 20s Proteasome In Complex With Pr-957
gi|378792339|pdb|3UNB|KK Chain k, Mouse Constitutive 20s Proteasome In Complex With Pr-957
gi|378792353|pdb|3UNB|YY Chain y, Mouse Constitutive 20s Proteasome In Complex With Pr-957
gi|378792367|pdb|3UNE|I Chain I, Mouse Constitutive 20s Proteasome
gi|378792381|pdb|3UNE|W Chain W, Mouse Constitutive 20s Proteasome
gi|378792395|pdb|3UNE|KK Chain k, Mouse Constitutive 20s Proteasome
gi|378792409|pdb|3UNE|YY Chain y, Mouse Constitutive 20s Proteasome
gi|378792423|pdb|3UNF|I Chain I, Mouse 20s Immunoproteasome In Complex With Pr-957
gi|378792437|pdb|3UNF|W Chain W, Mouse 20s Immunoproteasome In Complex With Pr-957
gi|378792451|pdb|3UNH|I Chain I, Mouse 20s Immunoproteasome
gi|378792465|pdb|3UNH|W Chain W, Mouse 20s Immunoproteasome
gi|5757661|gb|AAD50537.1|AF060092_1 proteasome subunit C10-II [Mus musculus]
gi|12832232|dbj|BAB22017.1| unnamed protein product [Mus musculus]
gi|12845973|dbj|BAB26979.1| unnamed protein product [Mus musculus]
gi|15928628|gb|AAH14783.1| Proteasome (prosome, macropain) subunit, beta type 3 [Mus musculus]
gi|68085773|gb|AAH98233.1| Proteasome (prosome, macropain) subunit, beta type 3 [Mus musculus]
gi|74139857|dbj|BAE31772.1| unnamed protein product [Mus musculus]
gi|148684145|gb|EDL16092.1| mCG13231, isoform CRA_b [Mus musculus]
gi|444713978|gb|ELW54866.1| Proteasome subunit beta type-3 [Tupaia chinensis]
Length = 205
Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 110/205 (53%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GKNC AI D +Q +++ K+ M LY+ GL D
Sbjct: 4 MSYN-GGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
A+++ R Y E I P T ++ + LY ++ P + P+IAG P + + F
Sbjct: 62 TVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRF-GPYYTEPVIAGLDPKTFKPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + G+ ES W+P + PE LFE SQ ++ A +RD
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAV 180
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G V+V+E DK+T R + RMD
Sbjct: 181 SGMGVIVHVIEKDKITTRTLKARMD 205
>gi|358378900|gb|EHK16581.1| hypothetical protein TRIVIDRAFT_183933 [Trichoderma virens Gv29-8]
Length = 205
Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 108/200 (54%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA VAM GK+C AI D L TI+ K+ Q ++L GL D ++
Sbjct: 8 NGGACVAMVGKDCVAIACDLRLGLQALTISNNFPKIFQYG-DVFLGLTGLATDVSTVSDL 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ Y E+ I+P TFA + S LY R+ P F++P++AG P +G+ F+ D
Sbjct: 67 FRYKVNMYRLREERAIAPRTFANLVSSSLYERRF-GPYFVSPVVAGLDPKTGKPFICGFD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
GC DF+ G+A + G+ E W+P L P+ LFE SQ ++ A +RD SGWGA
Sbjct: 126 SIGCIDFAKDFIVSGTASEQLFGMCEGLWEPDLEPDALFETISQALLNAVDRDALSGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY++E DKVT R + R D
Sbjct: 186 HVYIIEKDKVTKRLLKGRQD 205
>gi|195389042|ref|XP_002053187.1| GJ23747 [Drosophila virilis]
gi|194151273|gb|EDW66707.1| GJ23747 [Drosophila virilis]
Length = 208
Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 108/200 (54%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG ++AM GK+C I D T E KV +SP LYL GL D M +
Sbjct: 10 NGGCVIAMQGKDCIGIATDRRFGLQSHTAGEDCQKVFHLSPRLYLGLTGLQTDIMTVYNR 69
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y +E +SP + S LY + P F+ P+IAG P++ E ++ +D
Sbjct: 70 LLYRKNVYEINEGREVSPKVLTELLSHLLYEHRF-GPFFVEPVIAGLDPETLEPYICCMD 128
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC DFVA G+ + ++G+ ES W P L+ +LF+ +Q ++ + RD SGWG+
Sbjct: 129 LIGCANVTNDFVATGTCSDQLVGMCESVWSPNLNATELFKTIAQAMLGSFNRDAVSGWGS 188
Query: 185 TVYVVEPDKVTIRKIATRMD 204
+++++E DK+T R I TR D
Sbjct: 189 SIFILEKDKITERLIRTRKD 208
>gi|68488966|ref|XP_711676.1| hypothetical protein CaO19.1336 [Candida albicans SC5314]
gi|77023006|ref|XP_888947.1| hypothetical protein CaO19_1336 [Candida albicans SC5314]
gi|46432996|gb|EAK92454.1| hypothetical protein CaO19.1336 [Candida albicans SC5314]
gi|76573760|dbj|BAE44844.1| hypothetical protein [Candida albicans]
gi|238883475|gb|EEQ47113.1| proteasome component PUP3 [Candida albicans WO-1]
Length = 206
Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 104/200 (52%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA VAM GK+C AI D L Q ++ K+ + +L GL D + E
Sbjct: 8 NGGAAVAMIGKDCIAIASDLRLGQQSLGVSNNFEKIFSVGDKTFLGLTGLATDVISLKEL 67
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+T Y E+ I P T A + S LY R+ P F++PI+AG + F+ D
Sbjct: 68 FRFKTNLYKLREERNIEPSTLANLVSSSLYERRF-GPWFVSPIVAGLSSKDNKPFICGFD 126
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
GC DF+ G+A + + G+ ES ++P L PE LFE SQ ++ A +RD SGWGA
Sbjct: 127 SIGCIDFSHDFIVSGTASDQLYGMCESLYEPNLEPEDLFETISQALLNAVDRDALSGWGA 186
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY+V DKV R + TR D
Sbjct: 187 VVYIVTKDKVIKRVLKTRQD 206
>gi|241957591|ref|XP_002421515.1| macropain subunit, putative; multicatalytic endopeptidase complex
subunit, putative; proteasome component, putative
[Candida dubliniensis CD36]
gi|223644859|emb|CAX40854.1| macropain subunit, putative [Candida dubliniensis CD36]
Length = 206
Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 104/200 (52%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA VAM GK+C AI D L Q ++ K+ + +L GL D + E
Sbjct: 8 NGGAAVAMIGKDCIAIASDLRLGQQSLGVSNNFEKIFSVGDKTFLGLTGLATDVITLKEL 67
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+T Y E+ I P T A + S LY R+ P F++PI+AG + F+ D
Sbjct: 68 FRFKTNLYKLREERNIEPSTLANLVSSSLYERRF-GPWFVSPIVAGLSSKDNKPFICGFD 126
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
GC DF+ G+A + + G+ ES ++P L PE LFE SQ ++ A +RD SGWGA
Sbjct: 127 SIGCIDFSHDFIVSGTASDQLYGMCESLYEPNLEPEDLFETISQALLNAVDRDALSGWGA 186
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY+V DKV R + TR D
Sbjct: 187 VVYIVTKDKVIKRVLKTRQD 206
>gi|302925511|ref|XP_003054110.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256735051|gb|EEU48397.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 205
Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 109/200 (54%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA VAM GK+C AI D L T++ K+ Q ++L GL D ++
Sbjct: 8 NGGACVAMVGKDCVAIACDLRLGLQALTVSNNFPKIFQYG-DVFLGLTGLATDVNTVSDL 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+T Y E+ I+P TFA + S LY R+ P F++P++AG P +G+ F+ D
Sbjct: 67 FRYKTNMYRLREERAIAPRTFANLVSSSLYERRF-GPYFVSPVVAGLDPKTGKPFICGFD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
GC DF+ G+A + G+ E W+P + P+ LFE SQ ++ A +RD SGWGA
Sbjct: 126 SIGCIDFAKDFIVSGTASEQLFGMCEGLWEPDMEPDALFETISQSLLNAVDRDALSGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY++E DKVT R + R D
Sbjct: 186 HVYIIEKDKVTKRLLKGRQD 205
>gi|356461018|ref|NP_001239086.1| proteasome subunit beta type-3 [Canis lupus familiaris]
gi|354474809|ref|XP_003499622.1| PREDICTED: proteasome subunit beta type-3-like [Cricetulus griseus]
Length = 205
Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 110/205 (53%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GKNC AI D +Q +++ K+ M LY+ GL D
Sbjct: 4 MSYN-GGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
A+++ R Y E I P T ++ + LY ++ P + P+IAG P + + F
Sbjct: 62 TVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRF-GPYYTEPVIAGLDPKTFKPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + G+ ES W+P + PE LFE SQ ++ A +RD
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAV 180
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G V+++E DK+T R + RMD
Sbjct: 181 SGMGVIVHIIEKDKITTRTLKARMD 205
>gi|327275596|ref|XP_003222559.1| PREDICTED: proteasome subunit beta type-3-like [Anolis
carolinensis]
Length = 205
Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 109/205 (53%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GKNC AI D +Q +++ K+ M L++ GL D
Sbjct: 4 MSYN-GGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQ-KIFPMGDRLFIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
A+++ R Y E I P T ++ S LY R+ P + P+IAG P + E F
Sbjct: 62 TVAQRLKFRLNLYELKEGRQIKPQTLMSMVSNLLYERRF-GPYYTEPVIAGLDPITYEPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + G+ ES W+P + P+ LFE Q ++ A +RD
Sbjct: 121 VCSLDLIGCPMTTDDFVVSGTCSEQMYGMCESLWEPDMEPDHLFETIGQAMLNAVDRDAV 180
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G V+V+E DK+T R + RMD
Sbjct: 181 SGMGVVVHVIEKDKITTRTLKARMD 205
>gi|254570058|ref|XP_002492139.1| Beta 3 subunit of the 20S proteasome involved in
ubiquitin-dependent catabolism [Komagataella pastoris
GS115]
gi|238031936|emb|CAY69859.1| Beta 3 subunit of the 20S proteasome involved in
ubiquitin-dependent catabolism [Komagataella pastoris
GS115]
gi|328351376|emb|CCA37775.1| 20S proteasome subunit beta 3 [Komagataella pastoris CBS 7435]
Length = 205
Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 108/200 (54%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG+ VAM GK+C AI D L +A KV Q H++L GL D + E
Sbjct: 8 NGGSAVAMVGKDCVAIACDLRLGNQSLGVANNFEKVFQFG-HVFLGLTGLATDVITLNET 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+T Y E+ I P+TFA + S LY ++ P F+ PI+AG + + F+ + D
Sbjct: 67 FRFKTNLYKMREERDIEPETFANLVSTSLYEKRF-GPYFVGPIVAGINSKTNQPFICSFD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
GC DF G+A + + G+ E ++P LSP+ LFE SQ ++ A +RD SGWGA
Sbjct: 126 SIGCIDYSKDFAVVGTASDQLYGMCEGLYEPNLSPDDLFETISQALLNANDRDALSGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY++ DK++ R + +R D
Sbjct: 186 AVYIITKDKISKRYLKSRQD 205
>gi|8394082|ref|NP_058981.1| proteasome subunit beta type-3 [Rattus norvegicus]
gi|730380|sp|P40112.1|PSB3_RAT RecName: Full=Proteasome subunit beta type-3; AltName:
Full=Proteasome chain 13; AltName: Full=Proteasome
component C10-II; AltName: Full=Proteasome theta chain
gi|458731|dbj|BAA04824.1| proteasome subunit RC10-II [Rattus sp.]
gi|54261675|gb|AAH84723.1| Proteasome (prosome, macropain) subunit, beta type 3 [Rattus
norvegicus]
gi|149054057|gb|EDM05874.1| rCG33987, isoform CRA_a [Rattus norvegicus]
Length = 205
Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 110/205 (53%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GKNC AI D +Q +++ K+ M LY+ GL D
Sbjct: 4 MSYN-GGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
A+++ R Y E I P T ++ + LY ++ P + P+IAG P + + F
Sbjct: 62 TVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRF-GPYYTEPVIAGLDPKTFKPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + G+ ES W+P + PE LFE SQ ++ A +RD
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAV 180
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G V+++E DK+T R + RMD
Sbjct: 181 SGMGVIVHIIEKDKITTRTLKARMD 205
>gi|358391261|gb|EHK40665.1| beta subunit Pup3 of the 20S proteasome [Trichoderma atroviride IMI
206040]
Length = 205
Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 108/200 (54%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA VAM GK+C AI D L TI+ K+ Q ++L GL D ++
Sbjct: 8 NGGACVAMVGKDCVAIACDLRLGLQALTISNNFPKIFQYG-DVFLGLTGLATDVSTVSDL 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ Y E+ I+P TFA + S LY R+ P F++P++AG P +G+ F+ D
Sbjct: 67 FRYKVNMYRLREERAIAPRTFANLVSSSLYERRF-GPYFVSPVVAGLDPKTGKPFICGFD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
GC DF+ G+A + G+ E W+P L P+ LFE SQ ++ A +RD SGWGA
Sbjct: 126 SIGCIDFAKDFIVSGTASEQLFGMCEGLWEPDLEPDALFETISQALLTAVDRDALSGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY++E DKVT R + R D
Sbjct: 186 HVYIIEKDKVTKRLLKGRQD 205
>gi|440636325|gb|ELR06244.1| proteasome component PUP3 [Geomyces destructans 20631-21]
Length = 205
Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 106/200 (53%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA VAM GK+C AI D L T++ KV +YL GL D ++
Sbjct: 8 NGGACVAMVGKDCVAIACDLRLGLQSLTVSNNFPKVFNYG-DVYLGLTGLATDVATVSDL 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ Y E+ I+P TFA + S LY ++ P F++P++AG P +G F+ D
Sbjct: 67 FRYKVNMYRLREERNIAPSTFANLVSSSLYEKRF-GPFFVSPVVAGLDPKTGIPFICGFD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
GC DF+ G+A + + G E W+P L PE LFE SQ ++ A +RD SGWGA
Sbjct: 126 SIGCIDFAKDFIVAGTASDQLFGTCEGLWEPDLEPEDLFETISQALLNAVDRDALSGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY++E DKVT R + R D
Sbjct: 186 HVYIIEKDKVTKRLLKGRQD 205
>gi|190348459|gb|EDK40915.2| hypothetical protein PGUG_05013 [Meyerozyma guilliermondii ATCC
6260]
Length = 205
Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 104/200 (52%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA VAM GK+C AI D L +A KV QM +L GL D + E
Sbjct: 8 NGGAAVAMVGKDCIAIACDTRLGSQSLGLANNFEKVFQMGKTTFLGLTGLATDVITLRED 67
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
L+ Y E+ + P T A + S LY R+ P F++PI+AG G+ F+ D
Sbjct: 68 FRLKNNLYKLREEREMEPKTLANLVSTSLYERRF-GPYFVSPIVAGL-GKGGQPFICGFD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
GC DF+ G+A + + G ES ++P L PE LFE SQ ++ A +RD SGWGA
Sbjct: 126 SIGCIDFAKDFIVSGTASDQLYGTCESLYEPNLEPEDLFETISQALLNAVDRDALSGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VYVV +KV R + TR D
Sbjct: 186 VVYVVTKEKVVRRVLRTRQD 205
>gi|149054060|gb|EDM05877.1| rCG33987, isoform CRA_d [Rattus norvegicus]
Length = 202
Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 110/205 (53%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GKNC AI D +Q +++ K+ M LY+ GL D
Sbjct: 1 MSYN-GGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 58
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
A+++ R Y E I P T ++ + LY ++ P + P+IAG P + + F
Sbjct: 59 TVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRF-GPYYTEPVIAGLDPKTFKPF 117
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + G+ ES W+P + PE LFE SQ ++ A +RD
Sbjct: 118 ICSLDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAV 177
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G V+++E DK+T R + RMD
Sbjct: 178 SGMGVIVHIIEKDKITTRTLKARMD 202
>gi|417397057|gb|JAA45562.1| Putative proteasome subunit beta type-3 [Desmodus rotundus]
Length = 205
Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 111/205 (54%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GK+C AI D +Q +++ K+ M LY+ GL D
Sbjct: 4 MSYN-GGAVMAMKGKDCVAIAADRRFGIQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
A+++ R Y E PI P T ++ + LY ++ P + P+IAG P + + F
Sbjct: 62 TVAQRLKFRLNLYELKEGRPIKPYTLMSMVANLLYEKRF-GPYYTEPVIAGLDPKTFKPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + G+ ES W+P + P+ LFE SQ ++ A +RD
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPDMDPDHLFETISQAMLNAVDRDAV 180
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G V+V+E DK+T R + RMD
Sbjct: 181 SGMGVIVHVIEKDKITTRTLKARMD 205
>gi|126138200|ref|XP_001385623.1| hypothetical protein PICST_62487 [Scheffersomyces stipitis CBS
6054]
gi|126092901|gb|ABN67594.1| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 206
Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 104/200 (52%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG+ VAM GK+C AI D L +A K+ Q +L GL +D +E
Sbjct: 8 NGGSAVAMVGKDCIAIACDLRLGNQSLGLANNFEKIFQFGDKTFLGLTGLASDVTTLSEV 67
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ Y E+ I P T A + S LY ++ P FI PI+AG + + F+ D
Sbjct: 68 FRFKNNLYKLREERQIEPKTLANLVSSTLYEKRF-GPYFIGPIVAGLDSKTSKPFICGFD 126
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC DF+ G+A + + G+ ES ++P L PE LFE SQ ++ A +RD SGWGA
Sbjct: 127 LIGCIDFAKDFIVSGTATDQLYGMCESLYEPNLEPEDLFETISQALLNAVDRDALSGWGA 186
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VYVV DKV R + TR D
Sbjct: 187 IVYVVTKDKVVKRVLRTRQD 206
>gi|168037918|ref|XP_001771449.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677176|gb|EDQ63649.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 204
Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 112/200 (56%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G A++AM GK+CFAI D L TIA ++ ++ HLY+ GL D ++
Sbjct: 7 NGSALIAMVGKDCFAIASDRRLGVNFQTIACDFQRIFKIHDHLYIGLSGLATDVQTMHQR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E+ + P+TFA++ S LY ++ P F PIIAG D G F+ T D
Sbjct: 67 LNFRHKLYQLREERNMRPETFASLVSAMLYEKRF-GPYFCEPIIAGL-NDDGTPFICTTD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ G + DFV G+A + G ES ++P L P++LFEV SQ ++ + +RD SGWG
Sbjct: 125 LIGAKQLAKDFVVSGTASESLYGACESMYKPDLGPDELFEVISQALLASVDRDCISGWGG 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
V+VV P++V + + RMD
Sbjct: 185 IVHVVTPNQVITKTLKGRMD 204
>gi|440904222|gb|ELR54761.1| Proteasome subunit beta type-3, partial [Bos grunniens mutus]
Length = 205
Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 110/205 (53%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GKNC AI D +Q +++ K+ M LY+ GL D
Sbjct: 4 MSYN-GGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
A+++ R Y E I P T ++ + LY ++ P + P+IAG P + + F
Sbjct: 62 TVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRF-GPYYTEPVIAGLDPKTFKPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + G+ ES W+P + PE LFE SQ ++ A +RD
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCTEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAV 180
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G V+++E DK+T R + RMD
Sbjct: 181 SGMGVIVHIIEKDKITTRTLKARMD 205
>gi|406603265|emb|CCH45193.1| Proteasome component [Wickerhamomyces ciferrii]
Length = 210
Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 108/199 (54%), Gaps = 2/199 (1%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
GG++VAM GK+C AI D L ++ KV+ H+YL GL D + +E
Sbjct: 14 GGSVVAMVGKDCVAIASDLRLGNQSLGLSNKFEKVYNYG-HVYLGLTGLATDAITLSEVF 72
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
+T Y E+ I P++FA + S LY ++ P FI P++AG + + F+ D+
Sbjct: 73 RYKTNLYKLREERQIEPESFANLVSSTLYEKRF-GPYFIGPVVAGINSITSKPFICGFDL 131
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
GC DF+ G+A + + G+ ES ++P L PE LFE SQ ++ A +RD SGWG
Sbjct: 132 IGCIDFAKDFIVSGTATDQLYGMCESLYEPDLEPEDLFETISQALLNAADRDALSGWGGV 191
Query: 186 VYVVEPDKVTIRKIATRMD 204
VY++ DKV R + +R D
Sbjct: 192 VYIITKDKVVKRYLKSRQD 210
>gi|77736139|ref|NP_001029768.1| proteasome subunit beta type-3 [Bos taurus]
gi|426237857|ref|XP_004012874.1| PREDICTED: proteasome subunit beta type-3 [Ovis aries]
gi|108935878|sp|P33672.3|PSB3_BOVIN RecName: Full=Proteasome subunit beta type-3; AltName:
Full=Proteasome chain 13; AltName: Full=Proteasome
component C10-II; AltName: Full=Proteasome theta chain
gi|74354224|gb|AAI02555.1| Proteasome (prosome, macropain) subunit, beta type, 3 [Bos taurus]
gi|154426162|gb|AAI51436.1| Proteasome (prosome, macropain) subunit, beta type, 3 [Bos taurus]
gi|296476492|tpg|DAA18607.1| TPA: proteasome subunit beta type-3 [Bos taurus]
Length = 205
Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 110/205 (53%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GKNC AI D +Q +++ K+ M LY+ GL D
Sbjct: 4 MSYN-GGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
A+++ R Y E I P T ++ + LY ++ P + P+IAG P + + F
Sbjct: 62 TVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRF-GPYYTEPVIAGLDPKTFKPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + G+ ES W+P + PE LFE SQ ++ A +RD
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCTEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAV 180
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G V+++E DK+T R + RMD
Sbjct: 181 SGMGVIVHIIEKDKITTRTLKARMD 205
>gi|50419453|ref|XP_458253.1| DEHA2C13222p [Debaryomyces hansenii CBS767]
gi|49653919|emb|CAG86329.1| DEHA2C13222p [Debaryomyces hansenii CBS767]
Length = 206
Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 105/200 (52%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG+ VAM GK+C AI D L ++ K+ Q+ +L GL D + +E
Sbjct: 8 NGGSAVAMVGKDCIAIACDLRLGNQSLGLSNNFEKIFQLGDKTFLGLTGLATDVITLSET 67
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ Y E+ I P T A + S LY ++ P F+ PI+AG + + F+ D
Sbjct: 68 FRFKNNLYKLREEREIEPTTLANLVSSTLYEKRF-GPYFVGPIVAGLDSKTNKPFICGFD 126
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC DF+ G+A + + G+ ES ++P L PE LFE SQ ++ A +RD SGWGA
Sbjct: 127 LIGCIDFAKDFIVSGTASDQLYGMCESLYEPNLEPEDLFETISQSLLNAVDRDALSGWGA 186
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY+V D VT R + TR D
Sbjct: 187 VVYIVTKDNVTKRVLKTRQD 206
>gi|291405921|ref|XP_002719377.1| PREDICTED: proteasome beta 3 subunit [Oryctolagus cuniculus]
Length = 205
Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 110/205 (53%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GKNC AI D +Q +++ K+ M LY+ GL D
Sbjct: 4 MSYN-GGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
A+++ R Y E I P T ++ + LY ++ P + P+IAG P + + F
Sbjct: 62 TVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRF-GPYYTEPVIAGLDPKTYKPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + G+ ES W+P + PE LFE SQ ++ A +RD
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAV 180
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G V+++E DK+T R + RMD
Sbjct: 181 SGMGVIVHIIEKDKITTRTLKARMD 205
>gi|365981473|ref|XP_003667570.1| hypothetical protein NDAI_0A01690 [Naumovozyma dairenensis CBS 421]
gi|343766336|emb|CCD22327.1| hypothetical protein NDAI_0A01690 [Naumovozyma dairenensis CBS 421]
Length = 205
Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 107/200 (53%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG +VAMAGK+C AI D L ++ K+ H++L GL D +E
Sbjct: 8 NGGIVVAMAGKDCVAIACDLRLGSQSLGVSNNFEKIFHYG-HVFLGITGLATDVTTLSET 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
++ Y E I P+TF + S LY ++ P F+ P++AG SG+ F++ D
Sbjct: 67 FRYKSNLYELKEDRAIEPETFTQLVSSTLYEKRF-GPYFVGPVVAGINSKSGKPFIAGFD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC DF+ G+A + + G+ ES ++P L E LFE SQ ++ A +RD SGWGA
Sbjct: 126 LIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLESEDLFETISQALLNAADRDALSGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY+++ DKV R + R D
Sbjct: 186 VVYIIKKDKVIKRHLKMRQD 205
>gi|355568453|gb|EHH24734.1| Proteasome subunit beta type-3, partial [Macaca mulatta]
Length = 204
Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 110/205 (53%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GKNC AI D +Q +++ K+ M LY+ GL D
Sbjct: 3 MSYN-GGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 60
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
A+++ R Y E I P T ++ + LY ++ P + P+IAG P + + F
Sbjct: 61 TVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRF-GPYYTEPVIAGLDPKTFKPF 119
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + G+ ES W+P + PE LFE SQ ++ A +RD
Sbjct: 120 ICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAV 179
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G V+++E DK+T R + RMD
Sbjct: 180 SGMGVIVHIIEKDKITTRTLKARMD 204
>gi|383873358|ref|NP_001244746.1| proteasome subunit beta type-3 [Macaca mulatta]
gi|332258335|ref|XP_003278254.1| PREDICTED: proteasome subunit beta type-3 isoform 1 [Nomascus
leucogenys]
gi|402899980|ref|XP_003912961.1| PREDICTED: proteasome subunit beta type-3 [Papio anubis]
gi|403279415|ref|XP_003931246.1| PREDICTED: proteasome subunit beta type-3 [Saimiri boliviensis
boliviensis]
gi|355754088|gb|EHH58053.1| Proteasome subunit beta type-3 [Macaca fascicularis]
gi|380788351|gb|AFE66051.1| proteasome subunit beta type-3 [Macaca mulatta]
gi|383414525|gb|AFH30476.1| proteasome subunit beta type-3 [Macaca mulatta]
gi|384948330|gb|AFI37770.1| proteasome subunit beta type-3 [Macaca mulatta]
Length = 205
Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 110/205 (53%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GKNC AI D +Q +++ K+ M LY+ GL D
Sbjct: 4 MSYN-GGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
A+++ R Y E I P T ++ + LY ++ P + P+IAG P + + F
Sbjct: 62 TVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRF-GPYYTEPVIAGLDPKTFKPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + G+ ES W+P + PE LFE SQ ++ A +RD
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAV 180
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G V+++E DK+T R + RMD
Sbjct: 181 SGMGVIVHIIEKDKITTRTLKARMD 205
>gi|384501018|gb|EIE91509.1| hypothetical protein RO3G_16220 [Rhizopus delemar RA 99-880]
Length = 204
Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 109/200 (54%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG++VAM GK+C AI D L T++ K+ + + + PGL D + A++
Sbjct: 7 NGGSVVAMVGKDCVAIAADKRLGAQFMTVSTEFQKIFKATEKTLIGLPGLATDVITLADR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+T Y E+ I P A + S LY R+ P F+ P+IAG + F+ ++D
Sbjct: 67 FRFKTNMYKMREEREIEPKALAHMVSSTLYERRF-GPYFVEPVIAGL-DKHNKPFICSMD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC DFV G+A + G+ ES W+P L PE LFE SQ ++ A +RD SGWGA
Sbjct: 125 LIGCINFAKDFVVSGTAGPNLYGMCESLWEPDLEPEDLFETISQALLNAQDRDALSGWGA 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY++ +VT+R + +R D
Sbjct: 185 VVYIITSTEVTVRSLKSRQD 204
>gi|344299526|gb|EGW29879.1| hypothetical protein SPAPADRAFT_63501 [Spathaspora passalidarum
NRRL Y-27907]
Length = 206
Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 104/200 (52%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG+ VAM GK+C AI D L ++ K+ +L GL D + E
Sbjct: 8 NGGSAVAMVGKDCIAIASDLRLGNQSLGVSNNFEKIFGFGDKCFLGLTGLATDVLTLKET 67
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+T Y E+ I P+T A + S LY R+ P F++PI+AG + F+ D
Sbjct: 68 FRFKTNLYKLREERSIEPETLANLVSSTLYERRF-GPYFVSPIVAGLGHKDNKPFICGFD 126
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
GC DF+ G+A + + G+ ES ++P L PEQLFE SQ ++ A +RD SGWGA
Sbjct: 127 SIGCIDFAKDFIVSGTASDQLYGMCESLYEPDLEPEQLFETISQALLNAVDRDALSGWGA 186
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY+V DKV R + TR D
Sbjct: 187 VVYIVTKDKVVKRVLKTRQD 206
>gi|410980899|ref|XP_003996811.1| PREDICTED: proteasome subunit beta type-3 [Felis catus]
Length = 205
Score = 142 bits (359), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 110/205 (53%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GKNC AI D +Q +++ K+ M LY+ GL D
Sbjct: 4 MSYN-GGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
A+++ R Y E I P T ++ + LY ++ P + P+IAG P + + F
Sbjct: 62 TVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRF-GPYYTEPVIAGLDPKTFKPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + G+ ES W+P + PE LFE SQ ++ A +RD
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAV 180
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G V+V+E D++T R + RMD
Sbjct: 181 SGMGVIVHVIEKDRITTRTLKARMD 205
>gi|431890707|gb|ELK01586.1| Proteasome subunit beta type-3 [Pteropus alecto]
Length = 234
Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 110/205 (53%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GKNC AI D +Q +++ K+ M LY+ GL D
Sbjct: 33 MSYN-GGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 90
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
A+++ R Y E I P T ++ + LY ++ P + P+IAG P + + F
Sbjct: 91 TVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRF-GPYYTEPVIAGLDPKTFKPF 149
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + G+ ES W+P + PE LFE SQ ++ A +RD
Sbjct: 150 ICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAV 209
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G V+++E DK+T R + RMD
Sbjct: 210 SGMGVIVHIIEKDKITTRTLKARMD 234
>gi|443927308|gb|ELU45815.1| 20S proteasome subunit beta 3 [Rhizoctonia solani AG-1 IA]
Length = 415
Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 107/200 (53%), Gaps = 13/200 (6%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQ 60
M LN GG+++AMAGKNC AI D L T+A K+ ++ LY+ PGL D +
Sbjct: 4 MQLN-GGSVIAMAGKNCVAIASDLRLGNQALTVACNFEKIFPVTDRLYVGLPGLATDVLT 62
Query: 61 FAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSGEVF 119
E++ R Y E+ I P FA + S LY R+ P FI P+IAG P + F
Sbjct: 63 LRERLRFRVNMYTMKEEREIQPKAFAHLVSSTLYERRF-GPFFIEPVIAGLTPGPDPKPF 121
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGL----------SPEQLFEVCSQV 169
++ D+ GC T DFV G+A + + G+ ES W+P L PE LFE SQ
Sbjct: 122 IAATDLIGCLTLPDDFVVSGTASDKLFGVAESLWEPDLVRRHDAPVLTEPEDLFETISQT 181
Query: 170 VIQACERDTKSGWGATVYVV 189
++ A +RD SGWGA V+V+
Sbjct: 182 LLNAVDRDAYSGWGAIVHVM 201
>gi|168036644|ref|XP_001770816.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677875|gb|EDQ64340.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 204
Score = 142 bits (358), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 111/200 (55%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G A++AM GKNCFAI D L TIA ++ ++ LY+ GL D ++
Sbjct: 7 NGSALIAMVGKNCFAIASDRRLGVNFQTIACDFQRIFKIHDKLYIGLSGLATDVQTMHQR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E+ + P+TFA++ S LY ++ P F PIIAG D G F+ T D
Sbjct: 67 LQFRHKLYQLREERNMRPETFASLVSAILYEKRF-GPYFCEPIIAGL-NDDGTPFICTTD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ G + DFV G+A + G ES ++P L P++LFEV SQ ++ + +RD SGWG
Sbjct: 125 LIGAKQLAKDFVVSGTASESLYGACESMYKPDLGPDELFEVISQALLASVDRDCISGWGG 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
V+VV PD+V + + RMD
Sbjct: 185 IVHVVTPDQVITKTLKGRMD 204
>gi|451848501|gb|EMD61806.1| hypothetical protein COCSADRAFT_38618 [Cochliobolus sativus ND90Pr]
Length = 205
Score = 142 bits (358), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 106/200 (53%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA VAM GK+C AI D L T++ K+ Q ++L GL D ++
Sbjct: 8 NGGACVAMVGKDCVAIACDLRLGMQALTVSNNFPKIFQYG-DVFLGLTGLATDVSTVSDL 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ Y E+ ISP T A + S LY R+ P FI+P+IAG SG+ F+ D
Sbjct: 67 FRYKVNMYRLREERNISPQTMANLVSSSLYERRF-GPYFISPVIAGINQTSGKPFICGFD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
GC DF+ G+A + + G E W+P L PE LFE SQ ++ A +RD SGWGA
Sbjct: 126 SIGCIDFAKDFIVSGTASDQLFGTCEGLWEPDLGPEDLFETISQALLNAVDRDALSGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY++E DKVT R + R D
Sbjct: 186 HVYIIEKDKVTKRLLKGRQD 205
>gi|196002749|ref|XP_002111242.1| hypothetical protein TRIADDRAFT_50102 [Trichoplax adhaerens]
gi|190587193|gb|EDV27246.1| hypothetical protein TRIADDRAFT_50102 [Trichoplax adhaerens]
Length = 191
Score = 142 bits (357), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 73/193 (37%), Positives = 104/193 (53%), Gaps = 2/193 (1%)
Query: 12 MAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTAN 71
M GKNC AI D TI +++ MS HLY+ GL D + K+ R
Sbjct: 1 MTGKNCVAIAADRRFGIQAQTIGHEFQRIYGMSDHLYIGFSGLATDVTTVSNKLKFRLNM 60
Query: 72 YVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETR 131
Y+ E + P+TF ++ S LY ++ P F+ P+IAG + + F+ +LD+ GC
Sbjct: 61 YMLRENREMKPETFMSLVSSLLYEKRF-GPYFVEPVIAGL-DKNAKPFVGSLDLIGCPMI 118
Query: 132 KTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEP 191
DFV G+A + G+ ES W+P L + LFE SQ ++ A +RD SGWG VYV+E
Sbjct: 119 TEDFVVSGTASEQLYGMCESLWEPDLEADDLFESISQALLNAVDRDCVSGWGGIVYVIEK 178
Query: 192 DKVTIRKIATRMD 204
DKVT + + RMD
Sbjct: 179 DKVTEKILKARMD 191
>gi|406868327|gb|EKD21364.1| proteasome subunit beta type-3 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 212
Score = 142 bits (357), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 107/200 (53%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA VAM GK+C AI D L T++ K+ +YL GL D ++
Sbjct: 15 NGGACVAMVGKDCVAIACDLRLGLQSLTVSNNFPKIFSYG-DVYLGLTGLATDVSTVSDL 73
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ Y E+ ISP T A + S LY ++ P F++P++AG SG+ F+ D
Sbjct: 74 FRYKVNMYRLREERNISPSTMANLVSSSLYEKRF-GPYFVSPVVAGIDQKSGKPFICGFD 132
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
GC DF+ GG+A + + G E W+P L+PE LFE SQ ++ A +RD SGWGA
Sbjct: 133 SIGCIDFAKDFIVGGTASDQLFGTCEGLWEPDLAPEDLFETISQALLNAVDRDALSGWGA 192
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY++E DKVT R + R D
Sbjct: 193 HVYIIEKDKVTKRLLKGRQD 212
>gi|224063046|ref|XP_002300970.1| predicted protein [Populus trichocarpa]
gi|118487526|gb|ABK95590.1| unknown [Populus trichocarpa]
gi|222842696|gb|EEE80243.1| predicted protein [Populus trichocarpa]
Length = 204
Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 111/200 (55%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G AIVAM GKNCFAI D L T+A +++++ L++ GL D ++
Sbjct: 7 NGSAIVAMVGKNCFAIASDRRLGVNLQTVATDFQRIYKIHDKLFVGLSGLGTDAQTLYQR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E+ + P+TFA + S LY ++ P F P+IAG D + F+ T+D
Sbjct: 67 LVFRHKMYQLREERDMKPETFANLVSAVLYEKRF-GPYFCQPVIAGL-DDDDKPFICTMD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G + DFV GSA + G E+F++P + P++LFEV SQ ++ + +RD SGWG
Sbjct: 125 FIGAKELAKDFVVAGSASESLYGACEAFFKPDMEPDELFEVVSQALLASVDRDCLSGWGG 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
+Y+V PD + + + RMD
Sbjct: 185 HIYIVTPDDIKEKILKGRMD 204
>gi|387017850|gb|AFJ51043.1| Proteasome subunit beta type-3-like [Crotalus adamanteus]
Length = 205
Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 109/205 (53%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GKNC AI D +Q +++ K+ M L++ GL D
Sbjct: 4 MSYN-GGAVMAMKGKNCVAIAADRRFGIQAQMVATDFQ-KIFPMGDRLFIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
A+++ R Y E I P T ++ S LY R+ P + P+IAG P + E F
Sbjct: 62 TVAQRLKFRLNLYELKEGRQIKPQTLMSMVSNLLYERRF-GPYYTEPVIAGLNPVTYEPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + G+ ES W+P + P+ LFE Q ++ A +RD
Sbjct: 121 ICSLDLIGCPMITDDFVVSGTCTEQMYGMCESLWEPDMEPDHLFETIGQSMLNAVDRDAV 180
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G V+V+E DK+T R + RMD
Sbjct: 181 SGMGVIVHVIEKDKITTRTLKARMD 205
>gi|256070135|ref|XP_002571401.1| proteasome subunit beta 3 (T01 family) [Schistosoma mansoni]
gi|350646867|emb|CCD58588.1| proteasome subunit beta 3 (T01 family) [Schistosoma mansoni]
Length = 205
Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 108/201 (53%), Gaps = 1/201 (0%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++G A++AM+GK+C AI D TI+ KV+ + P LY+ PGL D +
Sbjct: 6 HNGSAVIAMSGKDCAAIACDLRFGVNLQTISTDFTKVYPLGPRLYVGFPGLATDNQTVFQ 65
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
++ R Y E I P T + S LY R+ P F+ P+IAG + + +++ +
Sbjct: 66 RLQFRKNMYELRENKTIKPQTITTMLSNLLYERRF-GPYFVEPVIAGIDHTTNKPYVACM 124
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWG 183
D+ GC DFV G+ + G+ E+ W+ ++ ++LFE SQ ++ A RD SGWG
Sbjct: 125 DLIGCVCEANDFVVSGTCTEQMYGMCETLWEENMNSKELFECISQCILNALNRDAVSGWG 184
Query: 184 ATVYVVEPDKVTIRKIATRMD 204
A VY++E D VTI + RMD
Sbjct: 185 ARVYLLEKDAVTISDLKMRMD 205
>gi|344285957|ref|XP_003414726.1| PREDICTED: proteasome subunit beta type-3-like [Loxodonta africana]
Length = 205
Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 110/205 (53%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GKNC AI D +Q +++ K+ M LY+ GL D
Sbjct: 4 MSYN-GGAVMAMKGKNCVAIASDRRFGIQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
A+++ R Y E I P T ++ + LY ++ P + P+IAG P + + F
Sbjct: 62 TVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRF-GPYYTEPVIAGLDPKTFKPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + G+ ES W+P + PE LFE SQ ++ A +RD
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPDMDPEHLFETISQAMLNAVDRDAV 180
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G V+++E DK+T R + RMD
Sbjct: 181 SGMGVIVHIIEKDKITTRTLKARMD 205
>gi|21465651|pdb|1IRU|J Chain J, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
gi|21465665|pdb|1IRU|X Chain X, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
gi|565647|dbj|BAA05645.1| proteasome subunit HsC10-II [Homo sapiens]
gi|1091575|prf||2021261C proteasome:SUBUNIT=HsC10-II
Length = 205
Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/205 (35%), Positives = 110/205 (53%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GKNC AI D +Q +++ K+ M LY+ GL D
Sbjct: 4 MSYN-GGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
A+++ R Y E I P T ++ + LY ++ P + P+IAG P + + F
Sbjct: 62 TVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRF-GPYYTEPVIAGLDPKTFKPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + G+ ES W+P + P+ LFE SQ ++ A +RD
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAV 180
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G V+++E DK+T R + RMD
Sbjct: 181 SGMGVIVHIIEKDKITTRTLKARMD 205
>gi|444323175|ref|XP_004182228.1| hypothetical protein TBLA_0I00480 [Tetrapisispora blattae CBS 6284]
gi|387515275|emb|CCH62709.1| hypothetical protein TBLA_0I00480 [Tetrapisispora blattae CBS 6284]
Length = 205
Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 106/200 (53%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG +VAM GK+C AI D L ++ K+ H++ GL D E
Sbjct: 8 NGGVVVAMTGKDCVAIACDLRLGSQSLGVSNNFEKIFHYG-HVFFGITGLATDVTTLNEL 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+T Y E I P+TF + S LY+++ P F+ P++AG +G+ +++ D
Sbjct: 67 FRYKTNMYKLKENRSIEPETFTNLVSSTLYSKRF-GPYFVGPVVAGLNSKTGKPYIAGFD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC DF+ G+A + + G+ ES ++P L E LFE SQ ++ A +RD SGWGA
Sbjct: 126 LIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLESEDLFETISQALLNAVDRDALSGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY+++ DKV R + TR D
Sbjct: 186 VVYIIKKDKVIKRYLKTRQD 205
>gi|302764110|ref|XP_002965476.1| hypothetical protein SELMODRAFT_266913 [Selaginella moellendorffii]
gi|302823097|ref|XP_002993203.1| hypothetical protein SELMODRAFT_272317 [Selaginella moellendorffii]
gi|300138973|gb|EFJ05723.1| hypothetical protein SELMODRAFT_272317 [Selaginella moellendorffii]
gi|300166290|gb|EFJ32896.1| hypothetical protein SELMODRAFT_266913 [Selaginella moellendorffii]
Length = 204
Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 111/200 (55%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G A+VAM GK+CFAI D L TIA ++ ++ LY+ GL +D ++
Sbjct: 7 NGSALVAMVGKDCFAIASDRRLGVNFQTIATDFQRIFKIHDKLYVGLAGLASDVQTLYQR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R + E+ + P+TF+ S LY ++ P F+ P+IAG D+ + ++ T+D
Sbjct: 67 LKYRHNLFQLQEERDMRPETFSNFVSATLYEKRF-GPYFVQPLIAGLGADN-KPYICTMD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G DFV GG+A + G ES ++P + PE LFE SQ +I + +RD SGWG
Sbjct: 125 SIGAIEHSKDFVVGGTASESLYGACESMYKPDMEPEDLFETISQALISSVDRDCLSGWGG 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VYVV PD+V +R + RMD
Sbjct: 185 IVYVVTPDQVIVRTLKGRMD 204
>gi|22538465|ref|NP_002786.2| proteasome subunit beta type-3 [Homo sapiens]
gi|397477037|ref|XP_003809892.1| PREDICTED: proteasome subunit beta type-3 [Pan paniscus]
gi|20532411|sp|P49720.2|PSB3_HUMAN RecName: Full=Proteasome subunit beta type-3; AltName:
Full=Proteasome chain 13; AltName: Full=Proteasome
component C10-II; AltName: Full=Proteasome theta chain
gi|15278174|gb|AAH13008.1| Proteasome (prosome, macropain) subunit, beta type, 3 [Homo
sapiens]
gi|119580935|gb|EAW60531.1| proteasome (prosome, macropain) subunit, beta type, 3 [Homo
sapiens]
gi|261860656|dbj|BAI46850.1| proteasome (prosome, macropain) subunit, beta type, 3 [synthetic
construct]
gi|410256642|gb|JAA16288.1| proteasome (prosome, macropain) subunit, beta type, 3 [Pan
troglodytes]
Length = 205
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/205 (35%), Positives = 110/205 (53%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GKNC AI D +Q +++ K+ M LY+ GL D
Sbjct: 4 MSYN-GGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
A+++ R Y E I P T ++ + LY ++ P + P+IAG P + + F
Sbjct: 62 TVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRF-GPYYTEPVIAGLDPKTFKPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + G+ ES W+P + P+ LFE SQ ++ A +RD
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAV 180
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G V+++E DK+T R + RMD
Sbjct: 181 SGMGVIVHIIEKDKITTRTLKARMD 205
>gi|407921624|gb|EKG14765.1| Proteasome subunit alpha/beta [Macrophomina phaseolina MS6]
Length = 205
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 105/200 (52%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA VAM GK+C AI D L T++ K+ +YL GL D A+
Sbjct: 8 NGGACVAMVGKDCVAIACDLRLGMQALTVSNNFPKIFSYG-DVYLGLTGLATDVSTVADL 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ Y E+ ISP T A + S LY R+ P F++P+IAG +G+ F+ D
Sbjct: 67 FRYKVNMYRLREERNISPQTMANLVSSSLYERRF-GPYFVSPVIAGINQTTGKPFICGFD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
GC DF+ G+A + + G E W+P L PE LFE SQ ++ A +RD SGWGA
Sbjct: 126 SIGCIDFAKDFIVSGTASDQLFGTCEGLWEPDLGPEDLFETVSQALLNAVDRDALSGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY++E DKVT R + R D
Sbjct: 186 HVYIIEKDKVTKRLLKGRQD 205
>gi|302829446|ref|XP_002946290.1| hypothetical protein VOLCADRAFT_78969 [Volvox carteri f.
nagariensis]
gi|300269105|gb|EFJ53285.1| hypothetical protein VOLCADRAFT_78969 [Volvox carteri f.
nagariensis]
Length = 204
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 108/200 (54%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G AIVAMAGK C AIG D TI+ KV ++ LYL GL D +K
Sbjct: 7 NGSAIVAMAGKECVAIGSDLRFGVQYQTISCDTPKVFKIHDKLYLGLSGLLTDAQTLHQK 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E+ + P TF + S LY R+ P F P++AG PD G +LS +D
Sbjct: 67 LLFRHNLYKLREERDMKPSTFGHMLSNALYERRF-GPYFAAPVVAGLEPD-GTPYLSGMD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G DF+ GG++ + G+ ES W+P + PE+LFE +Q ++ +RD +GWGA
Sbjct: 125 TIGAIETAKDFMIGGTSPESLYGMCESMWRPDMEPEELFETVAQCLMSGFDRDALAGWGA 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
++V+ DKV R + TRMD
Sbjct: 185 VIHVITKDKVITRTLKTRMD 204
>gi|54696308|gb|AAV38526.1| proteasome (prosome, macropain) subunit, beta type, 3 [synthetic
construct]
gi|60812279|gb|AAX36205.1| proteasome subunit beta type 3 [synthetic construct]
Length = 206
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/205 (35%), Positives = 110/205 (53%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GKNC AI D +Q +++ K+ M LY+ GL D
Sbjct: 4 MSYN-GGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
A+++ R Y E I P T ++ + LY ++ P + P+IAG P + + F
Sbjct: 62 TVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRF-GPYYTEPVIAGLDPKTFKPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + G+ ES W+P + P+ LFE SQ ++ A +RD
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAV 180
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G V+++E DK+T R + RMD
Sbjct: 181 SGMGVIVHIIEKDKITTRTLKARMD 205
>gi|449690724|ref|XP_002160822.2| PREDICTED: proteasome subunit beta type-3-like, partial [Hydra
magnipapillata]
Length = 196
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/195 (40%), Positives = 106/195 (54%), Gaps = 2/195 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQ 60
MS+N G A+VAM GKNC AI D TIA K QM L+L GL D
Sbjct: 4 MSIN-GSALVAMKGKNCVAIAADRRYGVQFQTIACDFEKTFQMGDKLFLGLSGLATDIQT 62
Query: 61 FAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFL 120
+T Y E ISP F I S LY R+ P F+ P+IAG +P + E ++
Sbjct: 63 VNCFFFFKTNLYELRENRKISPKVFMTIMSNILYGRRF-GPYFVEPLIAGLHPKTNEPYI 121
Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKS 180
++ D+ GC DFV G+ + + G+ ES W+P L PE LFEV SQ ++ A +RD S
Sbjct: 122 ASCDLIGCPCEPEDFVVSGTCGDQLYGMCESLWEPDLEPEALFEVISQALLNAQDRDCLS 181
Query: 181 GWGATVYVVEPDKVT 195
GWGA V++++P ++T
Sbjct: 182 GWGAVVHIIDPIRLT 196
>gi|195111614|ref|XP_002000373.1| GI22558 [Drosophila mojavensis]
gi|193916967|gb|EDW15834.1| GI22558 [Drosophila mojavensis]
Length = 203
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 108/198 (54%), Gaps = 1/198 (0%)
Query: 7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMT 66
G ++AM GK+C AI D +T E K+ ++P LY+ GL D + +++
Sbjct: 7 GCVIAMRGKDCVAISTDRRFCLPSYTAGEEFEKIFNLAPRLYIGLTGLQTDILTVQQRLV 66
Query: 67 LRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMA 126
R Y + S I+P + S LY + +P ++ PIIAG P + E ++S++D+
Sbjct: 67 HRRHAYEVNTGSLITPKILTELLSQMLYEHRF-APFYVEPIIAGMDPYTLEPYVSSMDLL 125
Query: 127 GCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATV 186
GC DFV G+ + ++G ES W P L + LFE S+ + + RD SG+GA V
Sbjct: 126 GCTIDSPDFVVVGTCTDQMLGTCESLWHPNLDSDGLFEAISRASVASGGRDIISGYGARV 185
Query: 187 YVVEPDKVTIRKIATRMD 204
Y++E DKVT+R I TRMD
Sbjct: 186 YLIEHDKVTVRLIRTRMD 203
>gi|440463429|gb|ELQ33009.1| proteasome component PUP3 [Magnaporthe oryzae Y34]
gi|440481325|gb|ELQ61924.1| proteasome component PUP3 [Magnaporthe oryzae P131]
Length = 192
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 102/193 (52%), Gaps = 1/193 (0%)
Query: 12 MAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTAN 71
M GK+C AI D L T++ K+ S ++L GL D ++ +
Sbjct: 1 MVGKDCVAIACDLRLGMQALTVSNNFPKIFSYSSSVFLGLTGLATDVATVSDLFRYKVNM 60
Query: 72 YVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETR 131
Y E+ I+P TFA + S LY R+ P F++P++AG P +G F+ D GC
Sbjct: 61 YRLREERNIAPRTFANLVSSSLYERRF-GPYFVSPVVAGLEPKTGAPFICGFDSIGCIDF 119
Query: 132 KTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEP 191
DF+ G+A + G+ ES W+P L PE LFE SQ ++ A +RD SGWGA VY++E
Sbjct: 120 AKDFIVSGTASEQLFGMCESLWEPDLGPEDLFETISQALLSAVDRDALSGWGAHVYIIEK 179
Query: 192 DKVTIRKIATRMD 204
DKVT R + R D
Sbjct: 180 DKVTKRLLKGRQD 192
>gi|189205423|ref|XP_001939046.1| proteasome subunit beta type-3 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187975139|gb|EDU41765.1| proteasome subunit beta type-3 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 205
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 106/200 (53%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA VAM GK+C AI D L T++ K+ Q ++L GL D ++
Sbjct: 8 NGGACVAMVGKDCVAIACDLRLGMQALTVSNNFPKIFQYG-DVFLGLTGLATDVSTVSDL 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ Y E+ ISP T A + S LY ++ P FI+P+IAG SG+ F+ D
Sbjct: 67 FRYKVNMYRLREERNISPQTMANLVSSSLYEKRF-GPYFISPVIAGINQTSGKPFICGFD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
GC DF+ G+A + + G E W+P L PE LFE SQ ++ A +RD SGWGA
Sbjct: 126 SIGCIDFAKDFIVSGTASDQLFGTCEGLWEPDLGPEDLFETISQALLNAVDRDALSGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY++E DKVT R + R D
Sbjct: 186 HVYIIEKDKVTKRLLKGRQD 205
>gi|407424924|gb|EKF39197.1| proteasome beta 3 subunit, putative [Trypanosoma cruzi marinkellei]
Length = 205
Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 111/199 (55%), Gaps = 1/199 (0%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
GG+ +AMAG CF I D+ L + TI+ K+H ++ ++ L GL D F+EK+
Sbjct: 8 GGSCLAMAGDGCFVIVSDNRLGEQLKTISMEVPKLHVINDNIVLGLTGLRTDQQTFSEKV 67
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
RT Y E+ I FAA+ S LY + P F+ P+I +GEV+L +D+
Sbjct: 68 HFRTELYKLREEREIGGKAFAALISSMLYEARF-GPWFVEPVIGSIDKRTGEVYLCAMDL 126
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
G D+V G+ + G+ E+ W+PGL PE+LFEV +Q ++ AC+RD+ SG+GA
Sbjct: 127 IGAPCEPEDYVCAGTCAESLHGMCEALWRPGLGPEELFEVAAQAMLSACDRDSLSGYGAV 186
Query: 186 VYVVEPDKVTIRKIATRMD 204
+V DK+T R I R D
Sbjct: 187 AAIVTKDKMTTRLIKGRKD 205
>gi|448536903|ref|XP_003871223.1| Pup3 beta 3 subunit of the 20S proteasome [Candida orthopsilosis Co
90-125]
gi|380355579|emb|CCG25098.1| Pup3 beta 3 subunit of the 20S proteasome [Candida orthopsilosis]
Length = 245
Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 101/200 (50%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA VAM GK+C AI D L ++ KV + Y+ GL D + E
Sbjct: 47 NGGAAVAMIGKDCVAIASDLRLGSQSLGVSNNFEKVFEFGDKTYMALTGLATDVITLREL 106
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+T Y E+ I P T A + S LY R+ P F+ PI+AG + F+ D
Sbjct: 107 FKFKTNLYKLREERSIEPSTLANLVSSSLYERRF-GPWFVGPIVAGLSSKDNKPFICGFD 165
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
GC DF+ G+A + + G+ E ++P L PE LFE SQ ++ A +RD SGWGA
Sbjct: 166 SIGCIDYSHDFIVSGTATDQLYGMCEGLYEPNLEPEDLFETISQALLNAVDRDALSGWGA 225
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY++ DKV R + TR D
Sbjct: 226 VVYIITKDKVVKRVLKTRQD 245
>gi|328770084|gb|EGF80126.1| hypothetical protein BATDEDRAFT_88542 [Batrachochytrium
dendrobatidis JAM81]
Length = 204
Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 106/200 (53%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G AI+AMAGKNC AI D T+ K+ ++ YL GL D ++
Sbjct: 7 NGSAIIAMAGKNCVAIAADRRFGVQALTLGTDFQKIFPITDKTYLGLAGLATDVTTLKDR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ Y E+ ISP TF+ + S Y ++ P F+ PI+AG D+ F+ ++D
Sbjct: 67 FRYKVNMYHLEEEREISPKTFSHMVSSTQYEKRF-GPYFVEPIVAGLEKDNTP-FICSMD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
GC DFV G+A + + G+ ES W+P L PE+LFEV SQ ++ A +RD SGWG
Sbjct: 125 TIGCINFAKDFVVCGTASDQMNGMCESLWEPDLEPEELFEVISQALLNAIDRDAISGWGG 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
V+++ P V R + RMD
Sbjct: 185 IVHIITPTSVITRTLKGRMD 204
>gi|146091504|ref|XP_001470046.1| putative proteasome beta 3 subunit [Leishmania infantum JPCM5]
gi|398017851|ref|XP_003862112.1| proteasome beta 3 subunit, putative [Leishmania donovani]
gi|134084840|emb|CAM69238.1| putative proteasome beta 3 subunit [Leishmania infantum JPCM5]
gi|322500341|emb|CBZ35418.1| proteasome beta 3 subunit, putative [Leishmania donovani]
Length = 205
Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 111/199 (55%), Gaps = 1/199 (0%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
GG+++AMAGK CF I D L + TI+ K+H ++ + GL D FA K+
Sbjct: 8 GGSVMAMAGKECFVIISDKRLGEQLKTISTEVPKLHVVNDSIVYGLTGLRTDQQTFANKV 67
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
RT Y E+ I+ FAA+ + LY + P F+ P+I +GEV+L D+
Sbjct: 68 QFRTDMYKLREERDITGKAFAAMITSMLYEARF-GPWFVEPVIGSIDKSTGEVYLCATDL 126
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
G D+V G+A + G+ E+ W+PG+SPE++FE+ +Q ++ AC+RD+ SG+GA
Sbjct: 127 IGAPCEPQDYVCAGTAAESLHGMCEALWRPGMSPEEVFEIAAQAMLSACDRDSLSGYGAV 186
Query: 186 VYVVEPDKVTIRKIATRMD 204
+V DK+T R I R D
Sbjct: 187 AMIVTKDKITTRLIKGRKD 205
>gi|347826593|emb|CCD42290.1| similar to proteasome subunit beta type-3 [Botryotinia fuckeliana]
Length = 212
Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 76/206 (36%), Positives = 106/206 (51%), Gaps = 7/206 (3%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA VAM GK+C AI D L T++ K+ P +YL GL D ++
Sbjct: 8 NGGACVAMVGKDCVAIACDLRLGLQALTVSNNFPKIFSYGPSVYLGLTGLATDVSTVSDL 67
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ Y E+ ISP T A + S LY R+ P F++P++AG +G+ F+ D
Sbjct: 68 FRYKVNMYRLREERNISPTTMANLVSSSLYERRF-GPFFVSPVVAGLDQKTGKPFICGFD 126
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGL------SPEQLFEVCSQVVIQACERDT 178
GC DF+ G+A + + G E W+P L PE LFE SQ ++ A +RD
Sbjct: 127 SIGCIDFAKDFIVSGTASDQLFGTCEGLWEPDLLNSQIQGPEDLFETISQALLNAVDRDA 186
Query: 179 KSGWGATVYVVEPDKVTIRKIATRMD 204
SGWGA VY++E DKVT R + R D
Sbjct: 187 LSGWGAHVYIIEKDKVTKRLLKGRQD 212
>gi|449464176|ref|XP_004149805.1| PREDICTED: proteasome subunit beta type-3-A-like [Cucumis sativus]
Length = 204
Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 110/200 (55%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G A+VAM GKNCFAI D L TIA K++++ L+L GL D ++
Sbjct: 7 NGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQKIYRIHDKLFLGLSGLGTDAQTLYQR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E+ + P+TFA++ S LY ++ P F P+IAG D + F+ T+D
Sbjct: 67 LVFRHKLYQLREERDMKPETFASLVSAILYEKRF-GPYFCQPVIAGL-SDEDKPFICTMD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G + DFV G+A + G E+ ++P + PE+LFE SQ ++ + +RD SGWG
Sbjct: 125 SIGAKELAKDFVVSGTASESLYGACEAMFKPDMEPEELFETISQALLSSVDRDCLSGWGG 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VYVV P +V R + RMD
Sbjct: 185 HVYVVTPTEVKERILKGRMD 204
>gi|157871480|ref|XP_001684289.1| putative proteasome beta 3 subunit [Leishmania major strain
Friedlin]
gi|68127358|emb|CAJ04676.1| putative proteasome beta 3 subunit [Leishmania major strain
Friedlin]
Length = 205
Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 111/199 (55%), Gaps = 1/199 (0%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
GG+++AMAGK CF I D L + TI+ K+H ++ + GL D FA K+
Sbjct: 8 GGSVMAMAGKECFVIISDKRLGEQLKTISTEVPKLHVVNNSIVYGLTGLRTDQQTFANKV 67
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
RT Y E+ I+ FAA+ + LY + P F+ P+I +GEV+L D+
Sbjct: 68 QFRTDMYKLREERDITGKAFAAMITSMLYEARF-GPWFVEPVIGSIDKSTGEVYLCATDL 126
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
G D+V G+A + G+ E+ W+PG+SPE++FE+ +Q ++ AC+RD+ SG+GA
Sbjct: 127 IGAPCEPEDYVCAGTAAESLHGMCEALWRPGMSPEEVFEIAAQAMLSACDRDSLSGYGAV 186
Query: 186 VYVVEPDKVTIRKIATRMD 204
+V DK+T R I R D
Sbjct: 187 AMIVTKDKITTRLIKGRKD 205
>gi|226478588|emb|CAX72789.1| proteasome (prosome, macropain) subunit, beta type 3 [Schistosoma
japonicum]
gi|226478710|emb|CAX72850.1| proteasome (prosome, macropain) subunit, beta type 3 [Schistosoma
japonicum]
gi|257206170|emb|CAX82736.1| proteasome (prosome, macropain) subunit, beta type 3 [Schistosoma
japonicum]
Length = 205
Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 106/201 (52%), Gaps = 1/201 (0%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++G A++ M+GK+C AI D TI+ KV+ + P LY+ PGL D +
Sbjct: 6 HNGSAVIGMSGKDCAAIACDLRFGVNLQTISTDFTKVYSLGPRLYVGFPGLATDNQTVFQ 65
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
++ R Y E I P T + S LY R+ P F+ P++AG + + +++ +
Sbjct: 66 RLQFRKNMYELRENRTIKPQTITTMLSNLLYERRF-GPYFVEPVVAGIDHTTSKPYVACM 124
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWG 183
D+ GC DFV G+ + G+ E+ W+ + ++LFE SQ ++ A RD SGWG
Sbjct: 125 DLIGCVCEANDFVVSGTCTEQMYGMCETLWEENMDSKELFECISQCILNALNRDAISGWG 184
Query: 184 ATVYVVEPDKVTIRKIATRMD 204
A VY++E D VTI + RMD
Sbjct: 185 ARVYLIEKDAVTISDLKMRMD 205
>gi|224084924|ref|XP_002307450.1| predicted protein [Populus trichocarpa]
gi|222856899|gb|EEE94446.1| predicted protein [Populus trichocarpa]
Length = 204
Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 112/200 (56%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G AIVAM GKNCFAI D L T+A +++++ +++ GL D ++
Sbjct: 7 NGSAIVAMVGKNCFAIASDRRLGVNLQTVATDFQRIYKIHDKVFVGLSGLGTDAQTLYQR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E+ + P+TFA++ S LY ++ P F P+IAG D + F+ T+D
Sbjct: 67 LVFRHKLYQLREERDMKPETFASLVSAILYEKRF-GPYFCQPVIAGL-GDDDKPFICTMD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G + DFV GSA + G E+ ++P + PE+LFEV SQ ++ + +RD SGWG
Sbjct: 125 FIGAKELAKDFVVAGSASESLYGACEALFKPDMEPEELFEVVSQALLASVDRDCLSGWGG 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
+Y+V PD++ + + RMD
Sbjct: 185 HIYIVTPDEIREKILKGRMD 204
>gi|89272044|emb|CAJ83196.1| proteasome (prosome macropain) subunit beta type 3 [Xenopus
(Silurana) tropicalis]
Length = 194
Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 105/196 (53%), Gaps = 3/196 (1%)
Query: 10 VAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
+AM GK+C AI D VQ +++ K+ M LY+ GL D ++++ R
Sbjct: 1 MAMRGKDCVAIAADRRFGVQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQTVSQRLKFR 59
Query: 69 TANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGC 128
Y E I P TF ++ + LY R+ P +I P+IAG P + + F+ +LD+ GC
Sbjct: 60 LNLYELKEGRQIKPKTFMSMVANLLYERRF-GPYYIEPVIAGLDPKTFKPFICSLDLIGC 118
Query: 129 ETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYV 188
DFV G+ + G+ ES W+P + PE LFE SQ ++ A +RD SG G V+V
Sbjct: 119 PMETEDFVVSGTCSEQMYGMCESLWEPDMEPEDLFETISQAMLNAVDRDAVSGMGVVVHV 178
Query: 189 VEPDKVTIRKIATRMD 204
+E DK+T R + RMD
Sbjct: 179 IEKDKITTRTLKARMD 194
>gi|348667371|gb|EGZ07196.1| hypothetical protein PHYSODRAFT_288866 [Phytophthora sojae]
Length = 204
Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 112/200 (56%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G AI+AMAGK+C I D L T+A KV +++ +L GL D ++
Sbjct: 7 NGAAIIAMAGKDCVGIACDTRLGMQAQTVAMDFQKVFRVTDKTFLGLAGLATDVQSVSQL 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ + Y +E+ I P T +A+ S +Y ++ P F+ P+IAG D+ + FLS++D
Sbjct: 67 LKFKLNMYKMNEEREIKPKTLSALLSSMMYEKRF-GPWFVEPVIAGLTEDN-KPFLSSMD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
GCE DFV G+ + + G+ ES ++P + E LFE SQ ++ AC RD SGWGA
Sbjct: 125 CLGCEMMTKDFVVAGTMEEALYGMCESMYKPDMEEEDLFETLSQCLLSACNRDALSGWGA 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
V+++ P +T +K+ +R D
Sbjct: 185 VVHIITPKGITSKKLQSRQD 204
>gi|354548652|emb|CCE45389.1| hypothetical protein CPAR2_704030 [Candida parapsilosis]
Length = 206
Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 101/200 (50%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA VAM GK+C AI D L ++ K+ + Y+ GL D + E
Sbjct: 8 NGGAAVAMIGKDCVAIASDLRLGSQSLGVSNNFEKIFEFGDKTYMALTGLATDVITLHEL 67
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+T Y E+ I P T A + S LY R+ P F+ PI+AG + F+ D
Sbjct: 68 FKFKTNLYKLREERSIEPSTLANLVSSSLYERRF-GPWFVGPIVAGLSSKDNKPFICGFD 126
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
GC DF+ G+A + + G+ E ++P L PE LFE SQ ++ A +RD SGWGA
Sbjct: 127 SIGCIDFSHDFIVSGTATDQLYGMCEGLYEPNLEPEDLFETISQALLNAVDRDALSGWGA 186
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY++ DKV R + TR D
Sbjct: 187 VVYIITKDKVVKRVLKTRQD 206
>gi|407859760|gb|EKG07148.1| proteasome beta 3 subunit, putative [Trypanosoma cruzi]
Length = 205
Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 110/199 (55%), Gaps = 1/199 (0%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
GG+ +AMAG CF I D+ L + TI+ K+H ++ + L GL D F+EK+
Sbjct: 8 GGSCLAMAGDGCFVIVSDNRLGEQLKTISMEVPKLHVINESIVLGLTGLRTDQQTFSEKV 67
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
R Y E+ I FAA+ S LY + P F+ P+IA +GEV+L +D+
Sbjct: 68 RFRNELYKLREEREIGGKAFAALVSSMLYEARF-GPWFVEPVIASIDKRTGEVYLCAMDL 126
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
G D+V G+ + G+ E+ W+PGL PE+LFEV +Q ++ AC+RD+ SG+GA
Sbjct: 127 IGAPCEPEDYVCAGTCAESLHGMCEALWRPGLGPEELFEVAAQAMLSACDRDSLSGYGAV 186
Query: 186 VYVVEPDKVTIRKIATRMD 204
+V DK+T R I R D
Sbjct: 187 AAIVTRDKMTTRLINGRKD 205
>gi|145514570|ref|XP_001443190.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124410568|emb|CAK75793.1| unnamed protein product [Paramecium tetraurelia]
Length = 204
Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 109/198 (55%), Gaps = 3/198 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG+IV M GKNC A+ D Q TI KV ++ ++ L GL +D F
Sbjct: 8 NGGSIVGMKGKNCIAMACDRRFGQQMSTITTNYQKVFKIQDNILLALSGLNSDIHTFYAL 67
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
M Y E + P TFA + + LY R+ P F+ PI+AG ++G+ L+T D
Sbjct: 68 MEKEINLYNLKENRKMKPSTFANLVASSLYERRF-GPFFVTPIVAGL--ENGKPILATYD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
GC++ DF GG+ N I G E+F++P LSPE+L EV Q ++ C+RD+ SGWG
Sbjct: 125 SIGCKSDLDDFQVGGTGGNYIYGACEAFFKPDLSPEELEEVIGQSLVSGCDRDSLSGWGG 184
Query: 185 TVYVVEPDKVTIRKIATR 202
VYV+ K+T++ + T+
Sbjct: 185 VVYVLTEQKLTVKILKTK 202
>gi|393911865|gb|EFO27070.2| proteasome subunit beta type-3 [Loa loa]
Length = 205
Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 106/199 (53%), Gaps = 1/199 (0%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
GG I+AMAG +C I D L + TIA KVH++ +Y+ G +D +K+
Sbjct: 8 GGTILAMAGNDCVCIASDLRLGEQMTTIATNMKKVHKLGEKVYIGLGGFHSDAKTVLDKI 67
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
T R Y E I P+ A + S LY + F P+IAG P + + ++ +D
Sbjct: 68 TFRKNLYELRENRKIKPEVAAVMVSNLLYQHRF-GGYFTEPLIAGLDPTTNKPYICAMDT 126
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
GC + DFVA G+ ++G+ E FW+ G++ ++LFE +Q ++ A ERD SGWG
Sbjct: 127 IGCISAPNDFVAVGTGTEYLLGVCEGFWKEGMNSDELFEATAQSMLSAMERDAASGWGVI 186
Query: 186 VYVVEPDKVTIRKIATRMD 204
VY + DKV ++ I RMD
Sbjct: 187 VYTITKDKVNVKTIKARMD 205
>gi|388491852|gb|AFK33992.1| unknown [Lotus japonicus]
Length = 204
Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 109/200 (54%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G AIVAM GKNCFAI D L T+A ++ ++ L++ GL D ++
Sbjct: 7 NGSAIVAMVGKNCFAIASDRRLGVQLQTVATDFQRIFKVHDKLFIALSGLATDAQTLYQR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E+ + P+TFA++ S LY ++ P F P+IAG D + F+ T+D
Sbjct: 67 LVFRHKLYQLREERDMKPETFASLVSALLYEKRF-GPYFCQPVIAGL-GDEDKPFICTMD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G + DFV GSA + G E+ ++P + PE+LFE SQ ++ + +RD SGWG
Sbjct: 125 CIGAKELAKDFVVAGSASESLYGACEAMFKPDMEPEELFETISQALLSSVDRDCLSGWGG 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VYVV P +V R + RMD
Sbjct: 185 HVYVVTPTEVKERILKGRMD 204
>gi|255558626|ref|XP_002520338.1| proteasome subunit beta type, putative [Ricinus communis]
gi|223540557|gb|EEF42124.1| proteasome subunit beta type, putative [Ricinus communis]
Length = 204
Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 111/200 (55%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G A++AM GKNCFAI D L TIA +++++ L+L GL D ++
Sbjct: 7 NGSALIAMVGKNCFAIASDRRLGVQLQTIATDFQRIYKIHDRLFLGLSGLATDAQTLYQR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E+ ++P+TFA++ S LY ++ P F P+IAG D + F+ T+D
Sbjct: 67 LVFRHKLYQLREERDMNPETFASLVSALLYEKRF-GPYFCQPVIAGL-SDENKPFICTMD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G + DFV G+A + G ES ++P L E+L E+ SQ ++ + +RD SGWG
Sbjct: 125 SIGAKELARDFVVAGTASESLYGACESMFKPDLEAEELTEIISQALLSSVDRDCLSGWGG 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VYVV P +VT R + RMD
Sbjct: 185 HVYVVTPTEVTERILKGRMD 204
>gi|301110580|ref|XP_002904370.1| proteasome subunit beta type-3, putative [Phytophthora infestans
T30-4]
gi|262096496|gb|EEY54548.1| proteasome subunit beta type-3, putative [Phytophthora infestans
T30-4]
Length = 204
Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 112/200 (56%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G AI+AMAGK+C I D L T+A KV +++ +L GL D ++
Sbjct: 7 NGAAIIAMAGKDCVGIACDTRLGMQAQTVAMDFQKVFRVTDKTFLGLAGLATDVQSVSQL 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ + Y +E+ I P T +A+ S +Y ++ P F+ P+IAG D+ + FLS++D
Sbjct: 67 LKFKINMYKMNEERDIKPKTLSALLSNMMYEKRF-GPWFVEPVIAGLTEDN-KPFLSSMD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
GCE DFV G+ + + G+ ES ++P + E LFE SQ ++ AC RD SGWGA
Sbjct: 125 CLGCEMMTKDFVVAGTMEEALYGMCESMYKPDMEEEDLFETLSQCLLSACNRDALSGWGA 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
V+++ P +T +K+ +R D
Sbjct: 185 VVHIITPKGITSKKLQSRQD 204
>gi|146323725|ref|XP_752084.2| proteasome component Pup3 [Aspergillus fumigatus Af293]
gi|129557567|gb|EAL90046.2| proteasome component Pup3, putative [Aspergillus fumigatus Af293]
gi|159125002|gb|EDP50119.1| proteasome component Pup3, putative [Aspergillus fumigatus A1163]
Length = 192
Score = 139 bits (351), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 100/193 (51%), Gaps = 1/193 (0%)
Query: 12 MAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTAN 71
M GK+C AI D L T++ K+ P YL GL D ++ + +
Sbjct: 1 MVGKDCVAIACDLRLGMQALTVSNNFPKIFNYGPSTYLGLTGLATDVNTVSDLLRYKVNM 60
Query: 72 YVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETR 131
Y E+ I+P T A + S LY R+ P F++P+IAG +G+ F+ D GC
Sbjct: 61 YRLREERNIAPQTLANLVSSSLYERRF-GPFFVSPVIAGVNSTTGKPFICGFDSIGCIDF 119
Query: 132 KTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEP 191
DF+ G+A + G E W+P LSPE LFE SQ ++ A +RD SGWGA VY++E
Sbjct: 120 AKDFIVSGTASEQLFGTCEGLWEPDLSPEDLFETISQALLSAVDRDALSGWGAQVYIIEK 179
Query: 192 DKVTIRKIATRMD 204
DKVT R + R D
Sbjct: 180 DKVTKRLLKGRQD 192
>gi|226478644|emb|CAX72817.1| proteasome (prosome, macropain) subunit, beta type 3 [Schistosoma
japonicum]
Length = 205
Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 106/201 (52%), Gaps = 1/201 (0%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++G A++ M+GK+C AI D TI+ KV+ + P LY+ PGL D +
Sbjct: 6 HNGSAVIGMSGKDCAAIACDLRFGVNLQTISTDFTKVYSLGPRLYVGFPGLATDNQIVFQ 65
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
++ R Y E I P T + S LY R+ P F+ P++AG + + +++ +
Sbjct: 66 RLQFRKNMYELRENRTIKPQTITTMLSNLLYERRF-GPYFVEPVVAGIDHTTSKPYVACM 124
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWG 183
D+ GC DFV G+ + G+ E+ W+ + ++LFE SQ ++ A RD SGWG
Sbjct: 125 DLIGCVCEANDFVVSGTCTEQMYGMCETLWEENMDSKELFECISQCILNALNRDAISGWG 184
Query: 184 ATVYVVEPDKVTIRKIATRMD 204
A VY++E D VTI + RMD
Sbjct: 185 ARVYLIEKDAVTISDLKMRMD 205
>gi|378725424|gb|EHY51883.1| proteasome component PUP3 [Exophiala dermatitidis NIH/UT8656]
Length = 192
Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 101/193 (52%), Gaps = 1/193 (0%)
Query: 12 MAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTAN 71
M GK+C AI D L T++ K+ P +YL GL D ++ +
Sbjct: 1 MVGKDCVAIACDLRLGLQALTVSNNFPKIFTYGPSVYLGLTGLATDVQTVSDTFRYKVNM 60
Query: 72 YVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETR 131
Y E+ ISP T A + S LY R+ P F++P++AG +G+ F+ D GC
Sbjct: 61 YRLREERNISPQTLANLVSSSLYERRF-GPWFVSPVLAGINHTTGKPFICGFDSIGCIDF 119
Query: 132 KTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEP 191
DF+ G+A + + G E W+P LSPE LFE SQ ++ A +RD SGWGA VY++E
Sbjct: 120 AKDFIVAGTASDQLFGTCEGLWEPDLSPEDLFETISQALLNAVDRDALSGWGAHVYIIEK 179
Query: 192 DKVTIRKIATRMD 204
DKVT R + R D
Sbjct: 180 DKVTKRLLKGRQD 192
>gi|357123202|ref|XP_003563301.1| PREDICTED: proteasome subunit beta type-3-like [Brachypodium
distachyon]
Length = 204
Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 109/200 (54%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G A+VAM GKNCFAI D L T+A +V ++ LYL GL D ++
Sbjct: 7 NGSAVVAMVGKNCFAIASDRRLGVQLQTVATDFQRVFKIHGKLYLGLSGLATDAQTLYQR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ + Y E+ + P+TFA++ S LY ++ P F PIIAG D+ E F+ T+D
Sbjct: 67 LVFKHKLYQLREERDMKPETFASLVSALLYEKRF-GPYFCQPIIAGLGEDN-EPFICTMD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G + DFV G+A + G ES ++P + PE+LFE SQ ++ + +RD SGWG
Sbjct: 125 CIGAKELAKDFVVSGTASESLYGACESMYKPNMEPEELFETISQALLSSVDRDCLSGWGG 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
V VV P +V R + RMD
Sbjct: 185 YVLVVTPTEVQERVLKGRMD 204
>gi|119501054|ref|XP_001267284.1| proteasome component Pup3, putative [Neosartorya fischeri NRRL 181]
gi|119415449|gb|EAW25387.1| proteasome component Pup3, putative [Neosartorya fischeri NRRL 181]
Length = 192
Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 100/193 (51%), Gaps = 1/193 (0%)
Query: 12 MAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTAN 71
M GK+C AI D L T++ K+ P YL GL D ++ +
Sbjct: 1 MVGKDCVAIACDLRLGMQALTVSNNFPKIFNYGPSTYLGLTGLATDVNTVSDLFRYKVNM 60
Query: 72 YVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETR 131
Y E+ I+P T A + S LY R+ P F++P+IAG +G+ F+ D GC
Sbjct: 61 YRLREERNIAPQTLANLVSSSLYERRF-GPFFVSPVIAGVNSTTGKPFICGFDSIGCIDF 119
Query: 132 KTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEP 191
DF+ G+A + + G E W+P LSPE LFE SQ ++ A +RD SGWGA VY++E
Sbjct: 120 AKDFIVSGTASDQLFGTCEGLWEPDLSPEDLFETISQALLSAVDRDALSGWGAQVYIIEK 179
Query: 192 DKVTIRKIATRMD 204
DKVT R + R D
Sbjct: 180 DKVTKRLLKGRQD 192
>gi|225719470|gb|ACO15581.1| Proteasome subunit beta type-3 [Caligus clemensi]
Length = 205
Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 114/200 (57%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G A+VAM GK+C I D TI K +M LY+ GL D +K
Sbjct: 7 NGSAVVAMKGKDCVGIASDLRFGSDRHTIMTDFPKTFEMGAGLYVGLAGLATDIQTVHQK 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R + E + P TF+ + S LY R+ P F+NP++AG+ + F+S++D
Sbjct: 67 LNFRKKMFELREGRQMRPKTFSEMLSSLLYERRF-GPFFVNPVVAGWDFVENKPFISSMD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ G T DFVA G+++N +MG+ E+ W ++ ++LFE SQ ++ + +RD+ +GWGA
Sbjct: 126 LIGAMTVPKDFVAVGTSENSLMGMCEALWFEDMNKDELFEAISQALMNSFDRDSLAGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
V+++E ++VT R++ TRMD
Sbjct: 186 EVHIIEKNQVTTRRLKTRMD 205
>gi|345567463|gb|EGX50395.1| hypothetical protein AOL_s00076g159 [Arthrobotrys oligospora ATCC
24927]
Length = 205
Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 106/200 (53%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA +AMAGK+C AI D L Q T++ K+ ++L GL D
Sbjct: 8 NGGACLAMAGKDCVAIACDLRLGQQALTLSNNFPKIFNYG-DVFLGLTGLATDVQTMHSL 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ Y E+ I P+T A + S LY R+ P F++P++AG +G+ F+ D
Sbjct: 67 FRYKVNLYRLREEREIEPETMANLVSSSLYERRF-GPYFVSPVVAGINQRTGKPFICGFD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
GC DF+ G+A + + G+ E W+P L PE LFE SQ ++ + +RD +GWGA
Sbjct: 126 SIGCIDFAKDFIVSGTASDQLFGVAEGLWEPDLEPEDLFETVSQTLLNSLDRDALAGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY++ DKVT R + TR D
Sbjct: 186 HVYIITKDKVTKRLLRTRQD 205
>gi|145514243|ref|XP_001443032.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124410393|emb|CAK75635.1| unnamed protein product [Paramecium tetraurelia]
Length = 204
Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 109/198 (55%), Gaps = 3/198 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG+IV M GKNC A+ D Q TI KV ++ ++ L GL +D F
Sbjct: 8 NGGSIVGMKGKNCIAMACDRRFGQQMSTITTNYQKVFKIQDNILLALSGLNSDIHTFYAL 67
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
M Y E + P TFA + + LY R+ P F+ PI+AG ++G+ L+T D
Sbjct: 68 MEKEINLYNLKENRKMKPTTFANLVASALYERRF-GPFFVTPIVAGL--ENGKPILATYD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
GC++ DF GG+ N I G E+F++P LSPE+L EV Q ++ C+RD+ SGWG
Sbjct: 125 SIGCKSDLDDFQVGGTGGNYIYGACEAFFKPDLSPEELEEVIGQSLVSGCDRDSLSGWGG 184
Query: 185 TVYVVEPDKVTIRKIATR 202
VYV+ K+T++ + T+
Sbjct: 185 VVYVLTEQKLTVKILKTK 202
>gi|325179973|emb|CCA14375.1| proteasome subunit beta type3 putative [Albugo laibachii Nc14]
Length = 204
Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 112/200 (56%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G AI+AMAGK+C I D L TI+ KV ++S ++L GL D ++
Sbjct: 7 NGSAIIAMAGKDCVGIACDTRLGLQAQTISTNFQKVFRVSDKIFLGLAGLATDVQTVSQL 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ + Y +E+ + P+T ++ S +Y ++ P FI P+IAG D+ + FLS++D
Sbjct: 67 LKFKVNMYKMNEERDLKPETLSSYLSAMMYKKRF-GPWFIEPVIAGLTADN-QPFLSSMD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
GCE + DFV G+ + + G+ ES ++P + E LFE SQ ++ AC RD SGWGA
Sbjct: 125 CLGCEMKTKDFVVAGTMEEALYGMCESMYRPDMESEDLFETLSQCLLSACNRDALSGWGA 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
V+++ P + R + +R D
Sbjct: 185 VVHIITPKGIMSRTLKSRQD 204
>gi|320580955|gb|EFW95177.1| Beta 3 subunit of the 20S proteasome [Ogataea parapolymorpha DL-1]
Length = 191
Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 103/193 (53%), Gaps = 2/193 (1%)
Query: 12 MAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTAN 71
M GK+C AI D L +A K+ Q+ H++L GL D E ++T
Sbjct: 1 MVGKDCVAIACDLRLGNQSLGVANNFEKIFQLG-HVFLGLTGLATDVTTVYENFRMKTNL 59
Query: 72 YVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETR 131
Y E+ I P++FA + S LY R+ P F+ P++AG +G+ F+ D GC
Sbjct: 60 YKMREEREIEPESFANLVSSSLYERRF-GPWFVGPLVAGINSKTGKPFICGFDFIGCIDY 118
Query: 132 KTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEP 191
DFV G+A + + G+ ES ++P L PE LFE SQ ++ A +RD SGWGA VYV+
Sbjct: 119 AKDFVVSGTATDQLYGMCESLYEPDLEPEDLFETISQALLNAADRDALSGWGAVVYVITK 178
Query: 192 DKVTIRKIATRMD 204
DKV R + +R D
Sbjct: 179 DKVIKRYLKSRQD 191
>gi|17380183|sp|O65084.1|PSB3_PICMA RecName: Full=Proteasome subunit beta type-3; AltName: Full=20S
proteasome alpha subunit C; AltName: Full=20S proteasome
subunit beta-3
gi|2982322|gb|AAC32146.1| probable proteasome subunit [Picea mariana]
gi|116784298|gb|ABK23292.1| unknown [Picea sitchensis]
Length = 204
Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 109/200 (54%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G A+VAM GKNCFAI D L TIA ++ ++ LY+ GL D ++
Sbjct: 7 NGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRIFKIHDKLYVGLSGLATDVQTLYQR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
R Y E+ + P+TFA++ S LY ++ P F P+IAG D + F+ T+D
Sbjct: 67 FAFRHKLYQLREERNMRPETFASLVSALLYEKRF-GPYFCQPVIAGLGEDD-KPFICTMD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G + DFV G+A + G ES ++P + PE+LFE SQ ++ + +RD SGWG
Sbjct: 125 SIGAKELAKDFVVAGTAAESLYGACESMYKPDMEPEELFETISQALLSSIDRDCLSGWGG 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VYVV P++V R + RMD
Sbjct: 185 HVYVVSPNQVIERTLKGRMD 204
>gi|351721818|ref|NP_001237990.1| uncharacterized protein LOC100499664 [Glycine max]
gi|255625639|gb|ACU13164.1| unknown [Glycine max]
Length = 204
Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 109/200 (54%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G A+VAM GKNCFAI D L TIA ++ ++ L++ GL D ++
Sbjct: 7 NGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDKLFIALSGLATDAQTLYQR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E+ + P+TFA++ S LY ++ P F P+IAG D + F+ T+D
Sbjct: 67 LVFRHKLYQLREERDMKPETFASLVSALLYEKRF-GPYFCQPVIAGL-GDEDKPFICTMD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G + DFV G+A + G E+ ++P + PE+LFE SQ ++ + +RD SGWG
Sbjct: 125 CLGAKELAKDFVVSGTASESLYGACEAMFKPDMEPEELFETISQALLSSVDRDCLSGWGG 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VYVV P +V R + RMD
Sbjct: 185 HVYVVTPTEVKERILKGRMD 204
>gi|346469773|gb|AEO34731.1| hypothetical protein [Amblyomma maculatum]
Length = 204
Score = 139 bits (349), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 109/200 (54%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G A+VAM GKNCFAI D L TIA ++ ++ LY+ GL D + ++
Sbjct: 7 NGSAVVAMVGKNCFAIASDRRLGVNLQTIATDFKRIFRIHDKLYVGLSGLATDALTLYQR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E+ + P+TFA++ S LY ++ P F P+IAG D F+ T+D
Sbjct: 67 LVFRHKLYQLREERDMKPETFASVVSAILYEKRF-GPYFCQPVIAGLGEDDVP-FICTMD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G + DFV G+A + G ES ++P + PE+LFE SQ ++ + +RD SGWG
Sbjct: 125 CIGAKELAKDFVVSGTANEPLYGACESMYKPNMEPEELFETISQALLSSVDRDCLSGWGG 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
V++V P +V R + RMD
Sbjct: 185 HVFLVTPTEVQERTLKGRMD 204
>gi|297701417|ref|XP_002827712.1| PREDICTED: proteasome subunit beta type-3 isoform 1 [Pongo abelii]
Length = 218
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 109/204 (53%), Gaps = 4/204 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GKNC AI D +Q +++ K+ M LY+ GL D
Sbjct: 4 MSYN-GGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
A+++ R Y E I P T ++ + LY ++ P + P+IAG P + + F
Sbjct: 62 TVAQRLKFRLNLYELKEGRQIKPYTLMSLVANLLYEKRF-GPYYTEPVIAGLDPKTFKPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + G+ ES W+P + PE LFE SQ ++ A +RD
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAV 180
Query: 180 SGWGATVYVVEPDKVTIRKIATRM 203
SG G V+++E DK+T R + R+
Sbjct: 181 SGMGVIVHIIEKDKITTRTLKARI 204
>gi|237830643|ref|XP_002364619.1| proteasome subunit beta type 3, putative [Toxoplasma gondii ME49]
gi|211962283|gb|EEA97478.1| proteasome subunit beta type 3, putative [Toxoplasma gondii ME49]
gi|221487700|gb|EEE25932.1| proteasome subunit beta type, putative [Toxoplasma gondii GT1]
gi|221507494|gb|EEE33098.1| proteasome subunit beta type, putative [Toxoplasma gondii VEG]
Length = 205
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 118/206 (57%), Gaps = 3/206 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLLVQGDF-TIAEYENKVHQMSPHLYLINPGLCADGM 59
M +G A+VAMAGK+C I D L F T++ KV +M+ H ++ GL D
Sbjct: 1 MDAYNGSAVVAMAGKDCVGIASDTRLGVNQFGTVSADFQKVFKMNNHTFVGLAGLATDVQ 60
Query: 60 QFAEKMTLRTANYVASEQ-SPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEV 118
+++ R+ Y E+ + + P+ + + S LY R+ +P F++P++AG +P++ +
Sbjct: 61 TVHKELVFRSNLYQLREEVTEMPPEIMSNVVSSMLYGRRF-APYFVSPVVAGLHPETHQP 119
Query: 119 FLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDT 178
FLS D G DFV G++ ++G+ ES W+P ++ ++L E SQ ++ A +RD
Sbjct: 120 FLSAFDYIGAACYAKDFVCNGTSAEQLVGVCESLWKPDMNEDELMETLSQSLLAAVDRDC 179
Query: 179 KSGWGATVYVVEPDKVTIRKIATRMD 204
+GWGA V+V+ P+ +T R++ RMD
Sbjct: 180 VAGWGAVVHVLTPNTITTRRLKCRMD 205
>gi|159476310|ref|XP_001696254.1| hypothetical protein CHLREDRAFT_187099 [Chlamydomonas reinhardtii]
gi|158282479|gb|EDP08231.1| predicted protein [Chlamydomonas reinhardtii]
Length = 204
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 107/200 (53%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G AIVAMAGK C AIG D T+ KV+++ LYL GL D +K
Sbjct: 7 NGAAIVAMAGKECVAIGSDLRFGVQLQTMTCDTPKVYKIHDKLYLGLSGLQTDATTLHQK 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E+ + P TF + S LY R+ P F P++AG PD G +L +D
Sbjct: 67 LQFRHNLYKLREERDMKPSTFGHMLSNALYERRF-GPYFAAPVVAGLEPD-GTPYLCGMD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G DF+ G++ + G+ ES W+P + P++LFE +Q ++ C+RD +GWGA
Sbjct: 125 TIGAIESAKDFMITGTSPESLYGMCESMWRPDMEPDELFETVAQCLMSGCDRDALAGWGA 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
V+V+ DKV R + TRMD
Sbjct: 185 VVHVITKDKVVSRTLKTRMD 204
>gi|258566702|ref|XP_002584095.1| proteasome component PUP3 [Uncinocarpus reesii 1704]
gi|237905541|gb|EEP79942.1| proteasome component PUP3 [Uncinocarpus reesii 1704]
Length = 192
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 103/193 (53%), Gaps = 1/193 (0%)
Query: 12 MAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTAN 71
M GK+C AI D L T++ K+ +P YL GL D ++ M +
Sbjct: 1 MVGKDCVAIACDLRLGMQALTVSNNFPKIFNYAPSTYLGLTGLATDVSSVSDLMRYKVNL 60
Query: 72 YVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETR 131
Y E+ ISP T A + S LY ++ P F++P++AG +G+ F+ D GC
Sbjct: 61 YRLREERQISPQTLANLVSSSLYEKRF-GPWFVSPVLAGINHTTGKPFICGFDSIGCIDF 119
Query: 132 KTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEP 191
DF+ G+A + + G+ E W+P L PE+LFE SQ ++ A +RD SGWGA VY++E
Sbjct: 120 AKDFIVSGTASDQLFGMCEGLWEPDLGPEELFETVSQALLNAVDRDALSGWGAHVYIIEK 179
Query: 192 DKVTIRKIATRMD 204
D+VT R + R D
Sbjct: 180 DRVTKRLLKGRQD 192
>gi|71003984|ref|XP_756658.1| hypothetical protein UM00511.1 [Ustilago maydis 521]
gi|46095730|gb|EAK80963.1| hypothetical protein UM00511.1 [Ustilago maydis 521]
Length = 189
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 102/185 (55%), Gaps = 2/185 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG++VA GKNC I D L Q T+A +KV +++ Y+ PGL +D E+
Sbjct: 7 NGGSVVAAKGKNCVVIASDLRLGQQAMTVACNFDKVFRVTEKTYVGLPGLASDVATLKER 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
R Y E+ I P+ FA + S LY R+ P FI P+IAG E F++ D
Sbjct: 67 FRYRVNMYKMKEERDIEPEIFANLVSSTLYERRF-GPYFIEPVIAGINSKD-EPFIAASD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC DFV G+A + + G+ E W+P L PE+LFE SQ+++ A ERD SGWGA
Sbjct: 125 VVGCLNFAKDFVVSGTASDKLFGMAEGLWEPDLGPEELFETVSQILLGALERDALSGWGA 184
Query: 185 TVYVV 189
V ++
Sbjct: 185 VVRIM 189
>gi|242064246|ref|XP_002453412.1| hypothetical protein SORBIDRAFT_04g005590 [Sorghum bicolor]
gi|241933243|gb|EES06388.1| hypothetical protein SORBIDRAFT_04g005590 [Sorghum bicolor]
Length = 204
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 108/200 (54%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G A+VAM GKNCFAI D L TIA +V ++ LY+ GL D ++
Sbjct: 7 NGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRVFKIHDKLYIGLSGLATDAQTLYQR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E+ + P+TFA++ S LY ++ P F P+IAG D+ E F+ T+D
Sbjct: 67 LVFRHKLYQLREERDMKPETFASLVSALLYEKRF-GPYFCQPVIAGL-GDNNEPFICTMD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G + DFV G+A + G ES ++P + PE+LFE SQ + + +RD SGWG
Sbjct: 125 CIGAKELAKDFVVSGTASESLYGACESMYKPNMEPEELFETISQALQASVDRDCLSGWGG 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
V +V P +V R + RMD
Sbjct: 185 YVLIVTPTEVQERVLKGRMD 204
>gi|17380264|sp|Q9NDA1.1|PSB3_TRYBB RecName: Full=Proteasome subunit beta type-3; AltName: Full=20S
proteasome subunit beta-3
gi|9622232|gb|AAF89685.1|AF169653_1 20S proteasome beta 3 subunit [Trypanosoma brucei]
gi|261334718|emb|CBH17712.1| proteasome beta 3 subunit, putative [Trypanosoma brucei gambiense
DAL972]
Length = 205
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 110/199 (55%), Gaps = 1/199 (0%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
GG+ +AMAGK CF + D+ L + TI+ K+H ++ + + GL D FA+K+
Sbjct: 8 GGSCLAMAGKECFVVISDNRLGEQLKTISMEVPKLHVINDGIVMGLTGLRTDQQTFAQKV 67
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
RT Y E+ I+ FAA+ S LY + P F+ P+I +GEV+L D+
Sbjct: 68 NFRTEMYKLREERDINGKAFAALVSSMLYEARF-GPWFVEPVIGTIDRKTGEVYLCATDL 126
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
G D+V G+ + G+ E+ W+PGL PE+LFEV +Q ++ AC+RD+ SG+GA
Sbjct: 127 IGAPCEPEDYVCAGTCAESLHGMCEALWRPGLEPEELFEVAAQAMLSACDRDSLSGYGAV 186
Query: 186 VYVVEPDKVTIRKIATRMD 204
+V DK+ R I R D
Sbjct: 187 AAIVTKDKLVTRLIKGRKD 205
>gi|212537587|ref|XP_002148949.1| proteasome component Pup3, putative [Talaromyces marneffei ATCC
18224]
gi|210068691|gb|EEA22782.1| proteasome component Pup3, putative [Talaromyces marneffei ATCC
18224]
Length = 192
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 100/193 (51%), Gaps = 1/193 (0%)
Query: 12 MAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTAN 71
M GK+C AI D L T++ K+ +P YL GL D ++ +
Sbjct: 1 MVGKDCVAIACDLRLGMQALTVSNNFPKIFNYAPSTYLGITGLATDVTTVSDLFRYKVNM 60
Query: 72 YVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETR 131
Y E+ ISP T A + S LY R+ P F++P+IAG +G+ F+ D GC
Sbjct: 61 YRLREERHISPQTLANLVSSSLYERRF-GPYFVSPVIAGINHTTGKPFICGFDSIGCIDF 119
Query: 132 KTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEP 191
DF+ G+A + + G E W+P L P+ LFE SQ ++ A +RD SGWGA VY++E
Sbjct: 120 AKDFIVSGTASDQLFGTCEGLWEPDLGPDDLFETISQALLNAVDRDALSGWGANVYIIEK 179
Query: 192 DKVTIRKIATRMD 204
DKVT R + R D
Sbjct: 180 DKVTKRLLKGRQD 192
>gi|225459609|ref|XP_002285871.1| PREDICTED: proteasome subunit beta type-3-A isoform 1 [Vitis
vinifera]
gi|302141789|emb|CBI18992.3| unnamed protein product [Vitis vinifera]
Length = 204
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 110/200 (55%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G A++AM GKNCFAI D T+A K++++ ++L GL D ++
Sbjct: 7 NGSALIAMVGKNCFAIASDRRFGVQLQTVATDFQKIYRIHDRVFLGLSGLATDAQTLYQR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E+ + P+TFA++ S LY ++ P F P+IAG D + F+ T+D
Sbjct: 67 LVFRHKLYQLREERDMKPETFASLVSALLYEKRF-GPYFCQPVIAGL-GDEDKPFICTMD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G + DFV G+A + G E+ ++P + PE+LFE+ SQ ++ + +RD SGWG
Sbjct: 125 SIGAKELAKDFVVAGTASESLYGACEAMFKPDMEPEELFEIISQALLSSVDRDCLSGWGG 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VYVV P +V R + RMD
Sbjct: 185 HVYVVTPTEVKERILKGRMD 204
>gi|225680862|gb|EEH19146.1| proteasome subunit beta type-3 [Paracoccidioides brasiliensis Pb03]
gi|226292563|gb|EEH47983.1| proteasome component PUP3 [Paracoccidioides brasiliensis Pb18]
Length = 192
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 100/193 (51%), Gaps = 1/193 (0%)
Query: 12 MAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTAN 71
M GK+C AI D L T++ K+ +P YL GL D ++ + +
Sbjct: 1 MVGKDCVAIACDLRLGLQALTVSNNFPKIFNYAPSTYLGLTGLATDVSTVSDVLRFKVNM 60
Query: 72 YVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETR 131
Y E+ ISP T A + S LY ++ P F++P++AG +GE F+ D GC
Sbjct: 61 YRLREERQISPQTLANLVSSSLYEKRF-GPYFVSPVLAGINNTTGEPFICGFDSIGCIDF 119
Query: 132 KTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEP 191
DF+ G+A + G E W+P L PE LFE SQ ++ A +RD SGWGA VY++E
Sbjct: 120 AKDFIVSGTASEQLFGTCEGLWEPDLGPEDLFETISQALLNAVDRDALSGWGAHVYIIEK 179
Query: 192 DKVTIRKIATRMD 204
DKVT R + R D
Sbjct: 180 DKVTKRLLKGRQD 192
>gi|116181896|ref|XP_001220797.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88185873|gb|EAQ93341.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 192
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 103/193 (53%), Gaps = 1/193 (0%)
Query: 12 MAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTAN 71
M GK+C AI D L T++ KV Q +++L GL D ++ +
Sbjct: 1 MVGKDCVAIACDLRLGLQALTVSNNFPKVFQYGENVFLGLTGLATDVSTVSDLFRYKVNM 60
Query: 72 YVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETR 131
Y E+ I+P TFA + S LY R+ P F++P++AG P +G F+ D GC
Sbjct: 61 YRLREERHIAPRTFANLVSSSLYERRF-GPYFVSPVVAGLDPTTGAPFICGFDSIGCIDF 119
Query: 132 KTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEP 191
DF+ G+A + G+ ES W+P + P+ LFE SQ ++ A +RD SGWGA VY++E
Sbjct: 120 AKDFIVSGTATEQLFGMCESLWEPDMGPDALFETISQSLLNAVDRDALSGWGAHVYIIEK 179
Query: 192 DKVTIRKIATRMD 204
DKVT R + R D
Sbjct: 180 DKVTKRLLKGRQD 192
>gi|225712652|gb|ACO12172.1| Proteasome subunit beta type-3 [Lepeophtheirus salmonis]
Length = 205
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 114/200 (57%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G A++AM G +C +I D T+ K +M P L++ GL D +K
Sbjct: 7 NGSAVLAMKGNDCVSIASDLRFGINRHTVMTDFPKTLEMGPGLFVGLAGLATDIQTVQQK 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R + E + P+TF+ + S LY R+ P F+N I+AG+ + F+S++D
Sbjct: 67 LNFRMKMFELREGRKMRPNTFSTMLSHLLYERRF-GPFFVNSIVAGYDYVENKPFISSMD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ G T DFVA G++++ +MG+ E+ W ++PE+L E SQ ++ + +RD+ +GWGA
Sbjct: 126 LIGAITIPEDFVAAGTSEDSLMGMCEALWFENMNPEELSEATSQAIMNSFDRDSLAGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
V+++E +VT R+I TRMD
Sbjct: 186 EVHIIEKHQVTTRRIKTRMD 205
>gi|388521659|gb|AFK48891.1| unknown [Lotus japonicus]
Length = 204
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 109/200 (54%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G A+VAM GKNCFA+ D L TIA ++ ++ L++ GL D ++
Sbjct: 7 NGSALVAMVGKNCFAVASDRRLGVQLQTIATDFQRISKIHDKLFIGLSGLATDAQTLYQR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E+ + P+TFA++ S LY ++ P F P+IAG D + F+ T+D
Sbjct: 67 LVFRHKLYQLREERDMKPETFASLVSSILYEKRF-GPYFCQPVIAGL-GDEDKPFICTMD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G + DFV GSA + G E+ ++P + PE+LFE SQ ++ + +RD SGWG
Sbjct: 125 CIGAKELAKDFVVAGSASESLYGACEAMFKPDMEPEELFETISQALLSSVDRDCLSGWGG 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VYVV P +V R + RMD
Sbjct: 185 HVYVVTPTEVKERILKGRMD 204
>gi|50309707|ref|XP_454865.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644000|emb|CAG99952.1| KLLA0E20197p [Kluyveromyces lactis]
Length = 205
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 110/200 (55%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG +VAM GK+C AIG D L +A K+ H++L GL D + +E
Sbjct: 8 NGGIVVAMTGKDCVAIGCDLRLGSQSLGVANNFEKIFHYG-HVFLGLTGLATDVLTLSES 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+T Y E PI P+TF + S LY ++ P F+ P++AG SG+ F++ D
Sbjct: 67 FRYKTNLYKLREDRPIEPETFTQLVSTSLYEKRF-GPYFVGPVVAGINSKSGKPFIAGFD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC DF+ G+A + + G+ ES ++P L + LFE SQ ++ A +RD SGWGA
Sbjct: 126 LIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEADDLFETISQALLNAADRDALSGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY+++ DKV + + TR D
Sbjct: 186 VVYIIKKDKVIKKYLKTRQD 205
>gi|351723417|ref|NP_001237278.1| uncharacterized protein LOC100306084 [Glycine max]
gi|255627485|gb|ACU14087.1| unknown [Glycine max]
Length = 204
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 108/200 (54%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G A+VAM GKNCFAI D L TIA ++ ++ L++ GL D ++
Sbjct: 7 NGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDKLFIGLSGLATDAQTLYQR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E+ + P TFA++ S LY ++ P F P+IAG D + F+ T+D
Sbjct: 67 LLFRHKLYQLREERDMKPQTFASLVSAILYEKRF-GPYFCQPVIAGL-GDDDKPFICTMD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G + DFV G+A + G ES ++P + PE+LFE SQ ++ + +RD SGWG
Sbjct: 125 AIGAKELAKDFVVAGTASESLYGACESMFKPDMEPEELFETISQALLSSVDRDCLSGWGG 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VYVV P +V R + RMD
Sbjct: 185 HVYVVTPTEVKERILKGRMD 204
>gi|357138383|ref|XP_003570772.1| PREDICTED: proteasome subunit beta type-3-like [Brachypodium
distachyon]
Length = 204
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 109/200 (54%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G A+VAM GKNCFAI D L T+A +V ++ LY+ GL D ++
Sbjct: 7 NGSAVVAMVGKNCFAIASDRRLGVQLQTVATDFQRVFKVHEKLYIGLSGLATDAQTLYQR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ + Y E+ + P+TFA++ S LY ++ P F PIIAG D+ + F+ T+D
Sbjct: 67 LVFKHKLYQLREERDMKPETFASLVSALLYEKRF-GPYFCQPIIAGL-GDNDQPFICTMD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G + DFV G+A + G ES ++P + PE+LFE SQ ++ + +RD SGWG
Sbjct: 125 CIGAKELAKDFVVSGTASESLYGACESMYKPDMEPEELFETISQALLSSVDRDCLSGWGG 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
V VV P +V R + RMD
Sbjct: 185 YVLVVTPTEVQERVLKGRMD 204
>gi|47028283|gb|AAT09074.1| proteasome beta subunit [Bigelowiella natans]
Length = 204
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 108/200 (54%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G AIVAM GK+C AI D TIA KV QM L++ GL D +K
Sbjct: 7 NGSAIVAMVGKDCVAIASDMRYGIQQQTIACDMKKVFQMGDKLFIGLSGLLTDVQTLKQK 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ Y E P+ P F+++ S LY ++ P F+ P++AG G F++ +D
Sbjct: 67 FDFKLKMYSLRENRPMRPKVFSSLVSSTLYEKRF-GPYFVEPVVAGLDAKEGP-FIAAMD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ G DFV G+ + + G+ E+FW+P + P++LFE SQ ++ A +RD +GWGA
Sbjct: 125 LIGAPVFAKDFVVSGTTSDELYGVCEAFWKPNMGPDELFETISQSLLAAVDRDCLAGWGA 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
V+V+ D VT +++ +R D
Sbjct: 185 IVHVITKDGVTTKQLKSRKD 204
>gi|164427141|ref|XP_964481.2| proteasome component PUP3 [Neurospora crassa OR74A]
gi|157071624|gb|EAA35245.2| proteasome component PUP3 [Neurospora crassa OR74A]
Length = 191
Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 103/193 (53%), Gaps = 2/193 (1%)
Query: 12 MAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTAN 71
M GK+C AI D L T++ K+ Q ++L GL D ++ +
Sbjct: 1 MVGKDCVAIACDLRLGLQALTVSNNFPKIFQYG-DVFLGLTGLATDVSTVSDLFRYKVNM 59
Query: 72 YVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETR 131
Y E+ I+P TFA + S LY R+ P F++P++AG P +GE F+ D GC
Sbjct: 60 YRLREERNIAPRTFANLVSSSLYERRF-GPYFVSPVVAGLDPKTGEPFICGFDSIGCIDF 118
Query: 132 KTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEP 191
DF+ G+A + G+ E+ W+P L PE LFE SQ ++ A +RD SGWGA VY++E
Sbjct: 119 AKDFIVSGTATEQLFGMCENLWEPNLGPEDLFETISQALLNAVDRDALSGWGAHVYIIEK 178
Query: 192 DKVTIRKIATRMD 204
DKVT R + R D
Sbjct: 179 DKVTKRLLKGRQD 191
>gi|340058923|emb|CCC53294.1| putative proteasome beta 3 subunit [Trypanosoma vivax Y486]
Length = 205
Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 110/199 (55%), Gaps = 1/199 (0%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
GG+ +AMAGK CF + D+ L + TI+ K+H ++ + L GL D FA+K+
Sbjct: 8 GGSCLAMAGKECFVVISDNRLGEQLKTISTEVPKLHVINDSIVLGLTGLRTDQQTFAQKV 67
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
RT Y E+ I+ FAA+ LY + P F+ P+I +GEV+L D+
Sbjct: 68 HFRTEMYKLCEEREINGKAFAALVMSMLYEARF-GPWFVEPVIGSIDRKTGEVYLCATDL 126
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
G D+V G+ + G+ E+ WQPGL+PE+LFEV +Q ++ AC+RD+ SG+GA
Sbjct: 127 IGAPCEPEDYVCAGTCAESLHGMCEALWQPGLAPEELFEVAAQAMLSACDRDSLSGYGAV 186
Query: 186 VYVVEPDKVTIRKIATRMD 204
+V +K+ + I R D
Sbjct: 187 AVIVTREKIVTKLIRGRKD 205
>gi|341897730|gb|EGT53665.1| hypothetical protein CAEBREN_01834 [Caenorhabditis brenneri]
Length = 204
Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 105/199 (52%), Gaps = 2/199 (1%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
GG IVAMAG C I D + + TIA + KVH+++ +Y+ G +D EK+
Sbjct: 8 GGTIVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDARTVLEKI 67
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
R Y E I P + + S Y + S F P++AG D+ + ++ +D
Sbjct: 68 MFRKNLYELRENRRIKPQVLSEMISNLAYQHRFGS-YFTEPLVAGL-DDTNKPYICCMDT 125
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
GC + DFVA G+ Q ++G+ E+FW+ + PE+LFE +Q ++ ERD SGWGA
Sbjct: 126 IGCVSAPRDFVAVGTGQEYLLGVCENFWRENMKPEELFEATAQSILSCLERDAASGWGAV 185
Query: 186 VYVVEPDKVTIRKIATRMD 204
VY + DKV + I RMD
Sbjct: 186 VYTITKDKVNVSTIKARMD 204
>gi|429858056|gb|ELA32890.1| proteasome component pup3 [Colletotrichum gloeosporioides Nara gc5]
Length = 191
Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 103/193 (53%), Gaps = 2/193 (1%)
Query: 12 MAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTAN 71
M GK+C AI D L T++ K+ Q ++L GL D + +
Sbjct: 1 MVGKDCVAIACDLRLGLQALTVSNNFPKIFQYG-DVFLGLTGLATDVTTVGDLFRYKVNM 59
Query: 72 YVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETR 131
Y E+ I+P TFA + S LY R+ P F++P++AG P +G+ F+ D GC
Sbjct: 60 YRLREERNIAPTTFANLVSSSLYERRF-GPYFVSPVVAGLDPKTGKPFICGFDSIGCIDF 118
Query: 132 KTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEP 191
DF+ G+A + G+ ES W+P L PE+LFE SQ ++ A +RD SGWGA VY++E
Sbjct: 119 AKDFIVSGTASEQLFGMCESLWEPDLGPEELFETISQSLLNAVDRDALSGWGAHVYIIEK 178
Query: 192 DKVTIRKIATRMD 204
DKVT R + R D
Sbjct: 179 DKVTKRLLKGRQD 191
>gi|452980318|gb|EME80079.1| hypothetical protein MYCFIDRAFT_189753 [Pseudocercospora fijiensis
CIRAD86]
Length = 192
Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 100/193 (51%), Gaps = 1/193 (0%)
Query: 12 MAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTAN 71
M GK+C AI D L T++ K+ S +L GL D +E +
Sbjct: 1 MVGKDCVAIACDLRLGLQALTVSNNFPKIFNYSQSTFLGLTGLATDVSTVSELFRYKVNM 60
Query: 72 YVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETR 131
Y E+ ISP TFA + S LY R+ P F++P++AG +G+ F+ D GC
Sbjct: 61 YRLREEREISPQTFANLVSSSLYERRF-GPWFVSPVVAGINQTTGKPFICGFDSIGCIDF 119
Query: 132 KTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEP 191
DF+ G+A + + G E W+P L PE LFE SQ ++ A +RD SGWGA VY++E
Sbjct: 120 AKDFIVSGTASDQLFGTCEGLWEPDLEPEDLFETMSQALLSAVDRDALSGWGAHVYIIEK 179
Query: 192 DKVTIRKIATRMD 204
DKVT R + R D
Sbjct: 180 DKVTKRLLKGRQD 192
>gi|297839603|ref|XP_002887683.1| hypothetical protein ARALYDRAFT_895633 [Arabidopsis lyrata subsp.
lyrata]
gi|297333524|gb|EFH63942.1| hypothetical protein ARALYDRAFT_895633 [Arabidopsis lyrata subsp.
lyrata]
Length = 204
Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 109/200 (54%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G A+VAM GKNCFAI D L TIA ++ ++ HL++ GL D ++
Sbjct: 7 NGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDHLFIGLSGLATDVQTLYQR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E+ + P+TFA++ S LY ++ P P+IAG D + F+ T+D
Sbjct: 67 LVFRHKLYQLREERDMKPETFASLVSAILYEKRF-GPFLCQPVIAGL-GDDNKPFICTMD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G + DFV G+A + G E+ ++P + E+LFE SQ ++ + +RD SGWG
Sbjct: 125 SIGAKELAKDFVVSGTASESLYGACEAMYKPDMEAEELFETISQALLSSVDRDCLSGWGG 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VYVV P++V R + RMD
Sbjct: 185 HVYVVTPNEVKERILKGRMD 204
>gi|323309416|gb|EGA62633.1| Pup3p [Saccharomyces cerevisiae FostersO]
Length = 191
Score = 137 bits (344), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 101/193 (52%), Gaps = 2/193 (1%)
Query: 12 MAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTAN 71
M GK+C AI D L ++ K+ H++L GL D E +T
Sbjct: 1 MTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNL 59
Query: 72 YVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETR 131
Y E+ I P+TF + S LY R+ P F+ P++AG SG+ F++ D+ GC
Sbjct: 60 YKLKEERAIEPETFTQLVSSSLYERRF-GPYFVGPVVAGINSKSGKPFIAGFDLIGCIDE 118
Query: 132 KTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEP 191
DF+ G+A + + G+ ES ++P L PE LFE SQ ++ A +RD SGWGA VY+++
Sbjct: 119 AKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADRDALSGWGAVVYIIKK 178
Query: 192 DKVTIRKIATRMD 204
D+V R + R D
Sbjct: 179 DEVVKRYLKMRQD 191
>gi|71650132|ref|XP_813770.1| proteasome beta 3 subunit [Trypanosoma cruzi strain CL Brener]
gi|71653810|ref|XP_815536.1| proteasome beta 3 subunit [Trypanosoma cruzi strain CL Brener]
gi|70878686|gb|EAN91919.1| proteasome beta 3 subunit, putative [Trypanosoma cruzi]
gi|70880598|gb|EAN93685.1| proteasome beta 3 subunit, putative [Trypanosoma cruzi]
Length = 205
Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 109/199 (54%), Gaps = 1/199 (0%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
GG+ +AMAG CF I D+ L + TI+ K+H ++ + L GL D F+EK+
Sbjct: 8 GGSCLAMAGDGCFVIVSDNRLGEQLKTISMEVPKLHVINESIVLGLTGLRTDQQTFSEKV 67
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
R Y E+ I FAA+ S LY + P F+ P+IA +GEV+L +D+
Sbjct: 68 RFRNELYKLREEREIGGKAFAALISSMLYEARF-GPWFVEPVIASIDKKTGEVYLCAMDL 126
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
G D+V G+ + G+ E+ W+PGL E+LFEV +Q ++ AC+RD+ SG+GA
Sbjct: 127 IGAPCEPEDYVCAGTCAESLHGMCEALWRPGLGSEELFEVAAQAMLSACDRDSLSGYGAV 186
Query: 186 VYVVEPDKVTIRKIATRMD 204
+V DK+T R I R D
Sbjct: 187 AAIVTRDKMTTRLINGRKD 205
>gi|336261120|ref|XP_003345351.1| hypothetical protein SMAC_04582 [Sordaria macrospora k-hell]
gi|380090602|emb|CCC11597.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 191
Score = 136 bits (343), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 102/193 (52%), Gaps = 2/193 (1%)
Query: 12 MAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTAN 71
M GK+C AI D L T++ K+ Q ++L GL D ++ +
Sbjct: 1 MVGKDCVAIACDLRLGLQALTVSNNFPKIFQYG-DVFLGLTGLATDVSTVSDLFRYKVNM 59
Query: 72 YVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETR 131
Y E+ I+P TFA + S LY R+ P F++P++AG P + E F+ D GC
Sbjct: 60 YRLREERNIAPKTFANLVSSSLYERRF-GPYFVSPVVAGLDPKTSEPFICGFDSIGCIDF 118
Query: 132 KTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEP 191
DF+ G+A + G+ ES W+P L PE LFE SQ ++ A +RD SGWGA VY++E
Sbjct: 119 AKDFIVSGTATEQLFGMCESLWEPNLGPEDLFETISQALLNAVDRDALSGWGAHVYIIEK 178
Query: 192 DKVTIRKIATRMD 204
DKVT R + R D
Sbjct: 179 DKVTKRLLKGRQD 191
>gi|260946487|ref|XP_002617541.1| proteasome component PUP3 [Clavispora lusitaniae ATCC 42720]
gi|238849395|gb|EEQ38859.1| proteasome component PUP3 [Clavispora lusitaniae ATCC 42720]
Length = 192
Score = 136 bits (343), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 97/193 (50%), Gaps = 1/193 (0%)
Query: 12 MAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTAN 71
M GK C AI D L +A K+ Q +L GL D + E L+
Sbjct: 1 MVGKECIAIACDLRLGNQSLGVANNFEKIFQFGDKTFLGLTGLATDVLTLKEDFRLKHNL 60
Query: 72 YVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETR 131
Y E+ I P T A + S LY ++ P F+ PI+AG + + F+ D+ GC
Sbjct: 61 YKLREEREIEPRTLANLVSSSLYEKRF-GPYFVGPIVAGLESKTNKPFICGFDLIGCIDF 119
Query: 132 KTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEP 191
DF+ G+A + + G+ ES ++P L PE LFE SQ ++ A +RD SGWGA VY+V
Sbjct: 120 AKDFIVSGTASDQLYGMCESLYEPNLEPEDLFETISQALLNAVDRDALSGWGAVVYIVTK 179
Query: 192 DKVTIRKIATRMD 204
DKV R + TR D
Sbjct: 180 DKVVKRVLKTRQD 192
>gi|47223967|emb|CAG06144.1| unnamed protein product [Tetraodon nigroviridis]
Length = 230
Score = 136 bits (343), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 112/230 (48%), Gaps = 29/230 (12%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GKNC AI D +Q +++ K+ M LY+ GL D
Sbjct: 4 MSYN-GGAVMAMRGKNCVAIAADRRFGIQAQMVTTDFQ-KIFPMGERLYIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
++++ R Y E I P TF ++ S LY R+ P +I P+IAG P + E F
Sbjct: 62 TVSQRLKFRLNLYELKEGRQIKPKTFMSMVSNLLYERRF-GPYYIEPVIAGLDPKTFEPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQP------------------GLSP-- 159
+ +LD+ GC DFV G+ + G+ ES W+P G P
Sbjct: 121 ICSLDLIGCPMETEDFVVSGTCSEQMYGMCESLWEPDMVSWTFLRRSDTTMMANGFRPAA 180
Query: 160 -----EQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
E LFE SQ ++ A +RD SG G V+V+E DK+T R + RMD
Sbjct: 181 SRQEAEDLFETISQAMLNAVDRDAVSGMGVVVHVIEKDKITTRTLKARMD 230
>gi|302411392|ref|XP_003003529.1| proteasome component PUP3 [Verticillium albo-atrum VaMs.102]
gi|261357434|gb|EEY19862.1| proteasome component PUP3 [Verticillium albo-atrum VaMs.102]
Length = 191
Score = 136 bits (343), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 104/193 (53%), Gaps = 2/193 (1%)
Query: 12 MAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTAN 71
M GK+C AI D L T++ K+ Q ++L GL D + ++
Sbjct: 1 MVGKDCVAIACDLRLGLQALTVSNNFPKIFQYG-DVFLGLTGLATDVTTVGDLFRYKSNM 59
Query: 72 YVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETR 131
Y E+ I+P TFA + S LY R+ P F++P++AG P +G+ F+ D GC
Sbjct: 60 YRLREERNIAPRTFANLVSSSLYERRF-GPYFVSPVVAGLDPKTGKPFICGFDSIGCIDF 118
Query: 132 KTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEP 191
DF+ G+A + G+ ES W+P L P++LFE SQ ++ A +RD SGWGA VY++E
Sbjct: 119 AKDFIVSGTASEQLFGMCESLWEPDLGPDELFETISQSLLNAVDRDALSGWGAHVYIIEK 178
Query: 192 DKVTIRKIATRMD 204
DKVT R + R D
Sbjct: 179 DKVTKRLLKGRQD 191
>gi|67528502|ref|XP_662053.1| hypothetical protein AN4449.2 [Aspergillus nidulans FGSC A4]
gi|40741024|gb|EAA60214.1| conserved hypothetical protein [Aspergillus nidulans FGSC A4]
gi|259482734|tpe|CBF77496.1| TPA: proteasome component Pup3, putative (AFU_orthologue;
AFUA_4G07420) [Aspergillus nidulans FGSC A4]
Length = 192
Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 102/193 (52%), Gaps = 1/193 (0%)
Query: 12 MAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTAN 71
M GK+C AI D L T++ K+ +P YL GL D ++ L+
Sbjct: 1 MVGKDCVAIACDLRLGMQALTVSNNFPKIFNYAPGTYLGLTGLATDVSTVSDLFRLKVNM 60
Query: 72 YVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETR 131
Y E+ I+P T A + S LY R+ + F++P+IAG +G+ F+ D GC
Sbjct: 61 YRLREERHIAPQTLANLVSSTLYERRFGA-YFVSPVIAGINNTTGKPFICGFDSIGCIDF 119
Query: 132 KTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEP 191
DF+ G+A + + G E W+P +SPE LFE SQ ++ A +RD SGWGA VY++E
Sbjct: 120 AKDFIVSGTASDQLFGTCEGLWEPDMSPEDLFETISQALLSAVDRDALSGWGAQVYIIEK 179
Query: 192 DKVTIRKIATRMD 204
DKVT R + R D
Sbjct: 180 DKVTQRLLKGRQD 192
>gi|343471879|emb|CCD15804.1| unnamed protein product [Trypanosoma congolense IL3000]
gi|343474036|emb|CCD14226.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 205
Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 110/199 (55%), Gaps = 1/199 (0%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
GG+ +AMAGK CF I D+ L +G TI+ K+H ++ + + GL D FA+K+
Sbjct: 8 GGSCLAMAGKECFVIISDNRLGEGLKTISMDVPKLHVINDGIVMGLTGLRTDQQTFAQKV 67
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
RT Y E+ I+ FAA+ + LY + P F+ P+I +GEV+L D+
Sbjct: 68 RFRTEMYKLREEREINGKAFAALVASMLYEARF-GPWFVEPVIGTIDRKTGEVYLCATDL 126
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
G D+V G+ + G+ E+ W+PGL E+LFE+ +Q ++ AC+RD+ SG+GA
Sbjct: 127 IGAPCEPEDYVCAGTCAESLHGMCEALWRPGLEAEELFEIAAQAMLSACDRDSLSGYGAV 186
Query: 186 VYVVEPDKVTIRKIATRMD 204
+V DK+ R I R D
Sbjct: 187 AAIVTKDKLITRLIRGRKD 205
>gi|71755781|ref|XP_828805.1| proteasome subunit beta 3 [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70834191|gb|EAN79693.1| proteasome beta 3 subunit, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 205
Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 107/206 (51%), Gaps = 15/206 (7%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLIN-------PGLCADG 58
GG+ +AMAGK CF + D+ L E + P LY+IN GL D
Sbjct: 8 GGSCLAMAGKECFVVISDNRL-------GEQLKTISMEVPKLYVINDGIVMGLTGLRTDQ 60
Query: 59 MQFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEV 118
FA+K+ RT Y E+ I+ FAA+ S LY + P F+ P+I +GEV
Sbjct: 61 QTFAQKVNFRTEMYKLREERDINGKAFAALVSSMLYEARF-GPWFVEPVIGTIDRKTGEV 119
Query: 119 FLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDT 178
+L D+ G D+V G+ + G+ E+ W+PGL PE+LFEV +Q ++ AC+RD+
Sbjct: 120 YLCATDLIGAPCEPEDYVCAGTCAESLHGMCEALWRPGLEPEELFEVAAQAMLSACDRDS 179
Query: 179 KSGWGATVYVVEPDKVTIRKIATRMD 204
SG+GA +V DK+ R I R D
Sbjct: 180 LSGYGAVAAIVTKDKLVTRLIKGRKD 205
>gi|149235806|ref|XP_001523781.1| proteasome component PUP3 [Lodderomyces elongisporus NRRL YB-4239]
gi|146452760|gb|EDK47016.1| proteasome component PUP3 [Lodderomyces elongisporus NRRL YB-4239]
Length = 212
Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 105/206 (50%), Gaps = 7/206 (3%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA VAM GK+C AI D L + + K Q PH ++ GL D E
Sbjct: 8 NGGAAVAMIGKDCIAIASDLRLGSQSLGVLNHFEKTFQFLPHTFMALTGLATDVTTVLEL 67
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYP----DSGEV-- 118
+T Y E+ I P T A + S LY R+ P F++PI+AG +GEV
Sbjct: 68 FKFKTNLYKLREEHYIEPLTLANLVSSLLYERRF-GPWFVSPIVAGLEKVKGSKNGEVKP 126
Query: 119 FLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDT 178
F+ D GC DF+ G+A + + G+ E ++P L PE+LFE SQ ++ A +RD
Sbjct: 127 FICGFDSIGCIDYSHDFIVSGTATDQLYGMCEGLYEPNLEPEELFETISQCLLNAVDRDA 186
Query: 179 KSGWGATVYVVEPDKVTIRKIATRMD 204
SGWG V+++ DKV R + TR D
Sbjct: 187 LSGWGCVVHIITKDKVIKRTLKTRQD 212
>gi|308493735|ref|XP_003109057.1| CRE-PBS-3 protein [Caenorhabditis remanei]
gi|308247614|gb|EFO91566.1| CRE-PBS-3 protein [Caenorhabditis remanei]
Length = 204
Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 105/199 (52%), Gaps = 2/199 (1%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
GG +VAMAG C I D + + TIA + KVH+++ +Y+ G +D EK+
Sbjct: 8 GGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDARTVLEKI 67
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
R Y E I P + + S Y + S F P++AG DS + ++ +D
Sbjct: 68 MFRKNLYELRENRRIKPQVLSEMISNLAYQHRFGS-YFTEPLVAGL-DDSNKPYICCMDT 125
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
GC + DFVA G+ Q ++G+ E+FW+ + P++LFE +Q ++ ERD SGWGA
Sbjct: 126 IGCVSAPRDFVAVGTGQEYLLGVCENFWRENMKPDELFEATAQSILSCLERDAASGWGAV 185
Query: 186 VYVVEPDKVTIRKIATRMD 204
VY + DKV + I RMD
Sbjct: 186 VYTITKDKVNVSTIKARMD 204
>gi|268530996|ref|XP_002630624.1| C. briggsae CBR-PBS-3 protein [Caenorhabditis briggsae]
Length = 204
Score = 135 bits (341), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 105/199 (52%), Gaps = 2/199 (1%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
GG +VAMAG C I D + + TIA + KVH+++ +Y+ G +D EK+
Sbjct: 8 GGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDARTVLEKI 67
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
R Y E I P + + S Y + S F P++AG D+ + ++ +D
Sbjct: 68 MFRKNLYELRENRRIKPQVLSEMISNLAYQHRFGS-YFTEPLVAGL-DDTNKPYICCMDT 125
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
GC + DFVA G+ Q ++G+ E+FW+ + P++LFE +Q ++ ERD SGWGA
Sbjct: 126 IGCVSAPRDFVAVGTGQEYLLGVCENFWRENMKPDELFEATAQSILSCLERDAASGWGAV 185
Query: 186 VYVVEPDKVTIRKIATRMD 204
VY + DKV I I RMD
Sbjct: 186 VYTITKDKVNISTIKARMD 204
>gi|325092329|gb|EGC45639.1| proteasome component [Ajellomyces capsulatus H88]
Length = 192
Score = 135 bits (341), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 101/193 (52%), Gaps = 1/193 (0%)
Query: 12 MAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTAN 71
M GK+C AI D L T++ K+ +P YL GL D ++ + +
Sbjct: 1 MVGKDCVAIACDLRLGLQALTVSNSFPKIFNYAPSTYLGLTGLATDVSSVSDLLRYKVNM 60
Query: 72 YVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETR 131
Y E+ ISP T A + S LY ++ P F++P++AG +G+ F+ D GC
Sbjct: 61 YRLREERQISPQTLANLISSSLYEKRF-GPYFVSPVLAGINSTTGKPFICGFDSIGCIDF 119
Query: 132 KTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEP 191
DF+ G+A + + G E W+P L P+ LFE SQ ++ A +RD SGWGA VY++E
Sbjct: 120 AKDFIVSGTASDQLFGTCEGLWEPDLGPDDLFETISQALLNAVDRDALSGWGAHVYIIEK 179
Query: 192 DKVTIRKIATRMD 204
DKVT R + R D
Sbjct: 180 DKVTKRLLKGRQD 192
>gi|154279074|ref|XP_001540350.1| proteasome component PUP3 [Ajellomyces capsulatus NAm1]
gi|150412293|gb|EDN07680.1| proteasome component PUP3 [Ajellomyces capsulatus NAm1]
gi|225562334|gb|EEH10613.1| proteasome component PUP3 [Ajellomyces capsulatus G186AR]
Length = 192
Score = 135 bits (340), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 101/193 (52%), Gaps = 1/193 (0%)
Query: 12 MAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTAN 71
M GK+C AI D L T++ K+ +P YL GL D ++ + +
Sbjct: 1 MVGKDCVAIACDLRLGLQALTVSNNFPKIFNYAPSTYLGLTGLATDVSSVSDLLRYKVNM 60
Query: 72 YVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETR 131
Y E+ ISP T A + S LY ++ P F++P++AG +G+ F+ D GC
Sbjct: 61 YRLREERQISPQTLANLISSSLYEKRF-GPYFVSPVLAGINSTTGKPFICGFDSIGCIDF 119
Query: 132 KTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEP 191
DF+ G+A + + G E W+P L P+ LFE SQ ++ A +RD SGWGA VY++E
Sbjct: 120 AKDFIVSGTASDQLFGTCEGLWEPDLGPDDLFETISQALLNAVDRDALSGWGAHVYIIEK 179
Query: 192 DKVTIRKIATRMD 204
DKVT R + R D
Sbjct: 180 DKVTKRLLKGRQD 192
>gi|18411547|ref|NP_565156.1| proteasome subunit beta type-3-B [Arabidopsis thaliana]
gi|79321410|ref|NP_001031294.1| proteasome subunit beta type-3-B [Arabidopsis thaliana]
gi|17380184|sp|O81153.1|PSB3B_ARATH RecName: Full=Proteasome subunit beta type-3-B; AltName: Full=20S
proteasome beta subunit C-2
gi|14326552|gb|AAK60320.1|AF385730_1 At1g77440/T5M16_3 [Arabidopsis thaliana]
gi|3421109|gb|AAC32069.1| 20S proteasome beta subunit PBC2 [Arabidopsis thaliana]
gi|19548049|gb|AAL87388.1| At1g77440/T5M16_3 [Arabidopsis thaliana]
gi|332197856|gb|AEE35977.1| proteasome subunit beta type-3-B [Arabidopsis thaliana]
gi|332197857|gb|AEE35978.1| proteasome subunit beta type-3-B [Arabidopsis thaliana]
Length = 204
Score = 135 bits (340), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 108/200 (54%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G A+VAM GKNCFAI D L TIA ++ ++ HL++ GL D ++
Sbjct: 7 NGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDHLFIGLSGLATDVQTLYQR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E+ + P+TFA++ S LY ++ P P+IAG D + F+ T+D
Sbjct: 67 LVFRHKLYQLREERDMKPETFASLVSAILYEKRF-GPFLCQPVIAGL-GDDNKPFICTMD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G + DFV G+A + G E+ ++P + E+LFE SQ ++ + +RD SGWG
Sbjct: 125 SIGAKELAKDFVVSGTASESLYGACEAMFKPDMEAEELFETISQALLSSVDRDCLSGWGG 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VYVV P +V R + RMD
Sbjct: 185 HVYVVTPKEVKERILKGRMD 204
>gi|298711226|emb|CBJ32446.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 204
Score = 135 bits (340), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 109/200 (54%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G AI+AM GKNC I D L T+A K+ +M L + PGL D + E
Sbjct: 7 NGAAILAMTGKNCVGICSDSRLGNQAQTVATDFEKIFKMGDKLMVGLPGLATDVITMKEL 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+T R Y E+ I P+TF+A+ S LY ++ P F+ PI+AG D+ F+S D
Sbjct: 67 LTFRLNLYRLREEREIKPETFSALMSHILYQKRF-GPYFVEPIVAGLKEDNTP-FISAFD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ G DFV GG+ N + G+ ESF++P + ++LFE +Q ++ + +RD SGWG
Sbjct: 125 LIGAPVVTDDFVVGGTCTNNLYGMCESFYRPDMDKDELFETMAQCLLTSVDRDALSGWGG 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
V+++ P+ + + + R D
Sbjct: 185 VVHIITPEGIMSKTLKGRQD 204
>gi|134106685|ref|XP_777884.1| hypothetical protein CNBA3530 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260584|gb|EAL23237.1| hypothetical protein CNBA3530 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 216
Score = 135 bits (340), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 103/194 (53%), Gaps = 7/194 (3%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQ 60
M LN GG++VAM GK+C AI D L IA +KV ++ LY PGL D
Sbjct: 4 MELN-GGSVVAMIGKDCVAIASDLRLGNQQVGIAANFDKVFPINDKLYCGLPGLATDVYT 62
Query: 61 FAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGF-YPDSGEV- 118
E + R Y E+ I+P TF + S LY ++ P F+ P++AG P S E
Sbjct: 63 LREHLRFRVNMYRMKEEREITPKTFTHLLSSTLYEKRF-GPFFLEPVVAGLPTPTSLEPH 121
Query: 119 ---FLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACE 175
++ST+D GC T DF G+A + + GI E W+P L PE LFE SQ ++ A +
Sbjct: 122 PRPYISTMDTIGCITTPKDFAVAGTAADKLYGIAEGLWEPDLEPEDLFETISQTLLSAVD 181
Query: 176 RDTKSGWGATVYVV 189
RD SGWGA V ++
Sbjct: 182 RDALSGWGAVVNII 195
>gi|428162279|gb|EKX31444.1| proteasome subunit beta type 3 [Guillardia theta CCMP2712]
Length = 208
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 107/204 (52%), Gaps = 6/204 (2%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG ++ MAGKNC AI D T+A + KV++M L++ GL D F E+
Sbjct: 7 NGGCVIGMAGKNCVAIACDKRYGAQYQTLATDKTKVYKMHDQLFIGLAGLATDQQTFYER 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R A Y E+ I P +F + S LY ++ P FI P+IAG ++ S+ D
Sbjct: 67 LKFRLAMYSLREERLIKPASFGKMVSTLLYEKRF-GPYFIEPVIAGLDKENKPYLFSS-D 124
Query: 125 MAGC----ETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKS 180
G + FV G+ +MG+ ES W+ L PE+LFE SQ ++ +RD S
Sbjct: 125 FIGAPLLPDMDTNGFVVAGTCTEQLMGMCESMWRKDLEPEELFETVSQCLLAGQDRDCLS 184
Query: 181 GWGATVYVVEPDKVTIRKIATRMD 204
GWGA V+++ PD+V R + RMD
Sbjct: 185 GWGAVVHIICPDRVITRTLRGRMD 208
>gi|296425517|ref|XP_002842287.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638550|emb|CAZ86478.1| unnamed protein product [Tuber melanosporum]
Length = 593
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 103/200 (51%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA+VAM GK+C AI D L T++ K+ +YL GL D +E
Sbjct: 396 NGGAVVAMVGKDCVAIACDLRLGMQALTVSNDFPKIFNYG-DVYLGLTGLATDVTSVSEL 454
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ Y E+ I P T A + S LY ++ P F++P+IAG SG+ F+ D
Sbjct: 455 FRYKVNMYRLREERDIEPQTMANLVSSSLYEKRF-GPYFVSPVIAGINQHSGKPFICGFD 513
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
GC DF+ G+A + + G E W+P L PE LFE SQ ++ + +RD SGWGA
Sbjct: 514 SIGCINFAEDFIVSGTASDQLFGTCEGLWEPDLEPEDLFETISQALLNSVDRDALSGWGA 573
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY+V DKV R + R D
Sbjct: 574 HVYLVTKDKVVKRLLKGRQD 593
>gi|326488821|dbj|BAJ98022.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326512002|dbj|BAJ95982.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 204
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 110/200 (55%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G A+VAM GKNCFAI D L T+A +V ++ LY+ GL +D ++
Sbjct: 7 NGSAVVAMVGKNCFAIASDRRLGVQLQTVATDFQRVFKIHGKLYIGLSGLASDAQTLYQR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ + Y E+ + P+TFA++ S LY ++ P F PIIAG ++ + F+ T+D
Sbjct: 67 LVFKHKLYQLREERDMKPETFASLVSALLYEKRF-GPYFCQPIIAGL-GENDQPFICTMD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G + DFV G+A + G ES ++P + PE+LFE SQ ++ + +RD SGWG
Sbjct: 125 CIGAKELAKDFVVSGTASESLYGACESMYKPDMEPEELFETISQALLSSVDRDCLSGWGG 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
V +V P +V R + RMD
Sbjct: 185 YVLIVTPTEVQERVLKGRMD 204
>gi|261201474|ref|XP_002627137.1| 20S proteasome peptidase [Ajellomyces dermatitidis SLH14081]
gi|239592196|gb|EEQ74777.1| 20S proteasome peptidase [Ajellomyces dermatitidis SLH14081]
gi|239611645|gb|EEQ88632.1| proteasome component Pup3 [Ajellomyces dermatitidis ER-3]
gi|327348342|gb|EGE77199.1| proteasome subunit beta type [Ajellomyces dermatitidis ATCC 18188]
Length = 192
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 101/193 (52%), Gaps = 1/193 (0%)
Query: 12 MAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTAN 71
M GK+C AI D L T++ K+ +P YL GL D ++ + +
Sbjct: 1 MVGKDCVAIACDLRLGLQALTVSNNFPKIFNYAPSTYLGLTGLATDVSTVSDVLRFKVNM 60
Query: 72 YVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETR 131
Y E+ ISP T A + S LY ++ P F++P++AG +G+ F+ D GC
Sbjct: 61 YRLREERHISPKTLANLTSSTLYEKRF-GPYFVSPVLAGIDNTTGKPFICGFDSIGCIDF 119
Query: 132 KTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEP 191
DF+ G+A + + G E W+P L P+ LFE SQ ++ A +RD SGWGA VY++E
Sbjct: 120 AQDFIVSGTASDQLFGTCEGLWEPDLGPDDLFETISQALLNAVDRDALSGWGAHVYIIEK 179
Query: 192 DKVTIRKIATRMD 204
DKVT R + R D
Sbjct: 180 DKVTKRLLKGRQD 192
>gi|34859236|ref|XP_215842.2| PREDICTED: proteasome subunit beta type-3-like [Rattus norvegicus]
gi|109470850|ref|XP_001081206.1| PREDICTED: proteasome subunit beta type-3-like [Rattus norvegicus]
Length = 205
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/205 (35%), Positives = 107/205 (52%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVD-HLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGAI A GKNC AI D H +Q +++ K+ M LY+ GL D
Sbjct: 4 MSYN-GGAITATKGKNCVAIAADRHFRIQAQMVTTDFQ-KIFPMGYRLYIDLAGLGTDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
A+ + R Y E I P T ++ + LY ++ P + P+IAG P + + F
Sbjct: 62 TVAQHLKFRLNLYELKEGQQIKPYTLLSMVANLLYEKRF-GPYYTEPVIAGLDPKTFKPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + G+ ES W+P + E LFE SQ ++ A ++D
Sbjct: 121 ICSLDLIGCSMVTNDFVVSGTCSEQMYGMCESLWEPNVDLEHLFETISQAMLNAVDQDAM 180
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
S G V+++E DK+T RK+ +MD
Sbjct: 181 SSMGVIVHIIEKDKITTRKLKAQMD 205
>gi|357475641|ref|XP_003608106.1| Proteasome subunit beta type [Medicago truncatula]
gi|355509161|gb|AES90303.1| Proteasome subunit beta type [Medicago truncatula]
gi|388497742|gb|AFK36937.1| unknown [Medicago truncatula]
Length = 204
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 108/201 (53%), Gaps = 2/201 (0%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++G A+VAM GKNCFAI D L TIA ++ ++ LY+ GL D +
Sbjct: 6 HNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDKLYIGLSGLATDSQTLYQ 65
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
++ R Y E+ + P+TFA++ S Y ++ P F P+IAG D + F+ T+
Sbjct: 66 RLVFRHKLYQLREELDMKPETFASLVSAMQYEKRF-GPYFCQPVIAGL-GDDDKPFICTM 123
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWG 183
D G + DFV G+A + G ES ++P + E+LFE SQ ++ + +RD SGWG
Sbjct: 124 DAIGAKELAKDFVVAGTASESLYGACESMFKPDMEAEELFETISQALLSSVDRDCLSGWG 183
Query: 184 ATVYVVEPDKVTIRKIATRMD 204
VYVV P +V R + RMD
Sbjct: 184 GHVYVVTPTEVKERILKGRMD 204
>gi|401424718|ref|XP_003876844.1| putative proteasome beta 3 subunit [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493088|emb|CBZ28372.1| putative proteasome beta 3 subunit [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 205
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 110/199 (55%), Gaps = 1/199 (0%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
GG+++AMAGK CF I D L + TI+ K+H ++ + GL D F K+
Sbjct: 8 GGSVMAMAGKECFVIISDKRLGEQLKTISTEVPKLHVVNDSIVYGLTGLRTDQQTFVNKV 67
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
RT Y E+ I+ F+++ + LY + P F+ P+I +G+V+L D+
Sbjct: 68 QFRTDMYKLREERNITGKAFSSMITSMLYEARF-GPWFVEPVIGSIDKSTGKVYLCATDL 126
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
G D+V G+A + G+ E+ W+PG+SPE++FE+ +Q ++ AC+RD+ SG+GA
Sbjct: 127 IGAPCEPEDYVCAGTAAESLHGMCEALWRPGMSPEEVFEIAAQAMLSACDRDSLSGYGAV 186
Query: 186 VYVVEPDKVTIRKIATRMD 204
+V DK+T R I R D
Sbjct: 187 AMIVTKDKITTRLIKGRKD 205
>gi|326509597|dbj|BAJ87014.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 204
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 108/200 (54%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G A+VAM GKNCFAI D L T+A +V ++ LY+ GL +D ++
Sbjct: 7 NGSAVVAMVGKNCFAIASDRRLGVQLQTVATDFQRVFKIHGKLYIGLSGLASDAQTLYQR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ + Y E+ + P+TFA++ S LY ++ P F PIIAG D E F+ T+D
Sbjct: 67 LVFKHKLYQLREERDMKPETFASLVSSMLYEKRF-GPYFCQPIIAGLGQDD-EPFICTMD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G + DFV G+A + G ES ++P + PE+LFE SQ ++ + +RD SGWG
Sbjct: 125 CIGAKELAKDFVVSGTASESLYGACESMYKPNMEPEELFETISQALLSSVDRDCLSGWGG 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
V +V +V R + RMD
Sbjct: 185 YVLIVTATEVQERVLKGRMD 204
>gi|17535357|ref|NP_494913.1| Protein PBS-3 [Caenorhabditis elegans]
gi|17380195|sp|Q23237.1|PSB3_CAEEL RecName: Full=Proteasome subunit beta type-3; Short=Proteasome
subunit beta 3
gi|351050990|emb|CCD73694.1| Protein PBS-3 [Caenorhabditis elegans]
Length = 204
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 105/199 (52%), Gaps = 2/199 (1%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
GG +VAMAG C I D + + TIA + KVH+++ +Y+ G +D EK+
Sbjct: 8 GGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDARTVLEKI 67
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
R Y E I P + + S Y + S F P++AG D+ + ++ +D
Sbjct: 68 MFRKNLYELRENRNIKPQVLSEMISNLAYQHRFGS-YFTEPLVAGL-DDTNKPYICCMDT 125
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
GC + DFVA G+ Q ++G+ E+FW+ + P++LFE +Q ++ ERD SGWGA
Sbjct: 126 IGCVSAPRDFVAVGTGQEYLLGVCENFWRENMKPDELFEATAQSILSCLERDAASGWGAV 185
Query: 186 VYVVEPDKVTIRKIATRMD 204
VY + DKV + I RMD
Sbjct: 186 VYTITKDKVNVSTIKARMD 204
>gi|344249174|gb|EGW05278.1| Proteasome subunit beta type-3 [Cricetulus griseus]
Length = 194
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 103/196 (52%), Gaps = 3/196 (1%)
Query: 10 VAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
+AM GKNC AI D +Q +++ K+ M LY+ GL D A+++ R
Sbjct: 1 MAMKGKNCVAIAADRRFGIQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQTVAQRLKFR 59
Query: 69 TANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGC 128
Y E I P T ++ + LY ++ P + P+IAG P + + F+ +LD+ GC
Sbjct: 60 LNLYELKEGRQIKPYTLMSMVANLLYEKRF-GPYYTEPVIAGLDPKTFKPFICSLDLIGC 118
Query: 129 ETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYV 188
DFV G+ + G+ ES W+P + PE LFE SQ ++ A +RD SG G V++
Sbjct: 119 PMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAVSGMGVIVHI 178
Query: 189 VEPDKVTIRKIATRMD 204
+E DK+T R + RMD
Sbjct: 179 IEKDKITTRTLKARMD 194
>gi|49388033|dbj|BAD25149.1| Proteasome subunit beta type 3 [Oryza sativa Japonica Group]
gi|215768995|dbj|BAH01224.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 204
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 106/200 (53%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G A+VAM GKNCFAI D L T+A +V ++ LY+ GL D ++
Sbjct: 7 NGSAVVAMVGKNCFAIASDRRLGVQLQTVATDFQRVFKIHDKLYIGLSGLATDAQTLYQR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E+ + P FA++ S LY ++ P F P+IAG D+ E F+ T+D
Sbjct: 67 LVFRHKLYQLREERDMKPQAFASLVSALLYEKRF-GPYFCQPVIAGL-GDNDEPFICTMD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G + DFV G+A + G ES ++P + PE+LFE SQ + + +RD SGWG
Sbjct: 125 CIGAKELAKDFVVSGTASESLYGACESMYKPSMEPEELFETISQALQASVDRDCLSGWGG 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
V +V P +V R I RMD
Sbjct: 185 YVLLVTPTEVQERVIKGRMD 204
>gi|125538349|gb|EAY84744.1| hypothetical protein OsI_06114 [Oryza sativa Indica Group]
gi|125581051|gb|EAZ21982.1| hypothetical protein OsJ_05637 [Oryza sativa Japonica Group]
Length = 213
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 106/200 (53%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G A+VAM GKNCFAI D L T+A +V ++ LY+ GL D ++
Sbjct: 16 NGSAVVAMVGKNCFAIASDRRLGVQLQTVATDFQRVFKIHDKLYIGLSGLATDAQTLYQR 75
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E+ + P FA++ S LY ++ P F P+IAG D+ E F+ T+D
Sbjct: 76 LVFRHKLYQLREERDMKPQAFASLVSALLYEKRF-GPYFCQPVIAGL-GDNDEPFICTMD 133
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G + DFV G+A + G ES ++P + PE+LFE SQ + + +RD SGWG
Sbjct: 134 CIGAKELAKDFVVSGTASESLYGACESMYKPSMEPEELFETISQALQASVDRDCLSGWGG 193
Query: 185 TVYVVEPDKVTIRKIATRMD 204
V +V P +V R I RMD
Sbjct: 194 YVLLVTPTEVQERVIKGRMD 213
>gi|226504734|ref|NP_001140276.1| uncharacterized protein LOC100272320 [Zea mays]
gi|194698808|gb|ACF83488.1| unknown [Zea mays]
Length = 204
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 107/200 (53%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G A+VAM GKNCFAI D L TIA +V ++ LY+ GL D ++
Sbjct: 7 NGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFRRVFKVHDKLYIGLSGLATDAQTLYQR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E+ + P+TFA++ S LY ++ P F P+IAG D+ E F+ T+D
Sbjct: 67 LVFRHKLYQLMEERDMKPETFASLVSALLYEKRF-GPYFCQPVIAGL-GDNDEPFICTMD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G + DFV G+A + G ES ++P + PE+LFE SQ + + +RD SGWG
Sbjct: 125 CIGAKELAKDFVVSGTASESLYGACESMYKPNMEPEELFETISQALQASVDRDCLSGWGG 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
V VV +V R + RMD
Sbjct: 185 YVLVVTHTEVQERVLKGRMD 204
>gi|350536231|ref|NP_001232468.1| putative proteasome subunit beta type 3 [Taeniopygia guttata]
gi|197128389|gb|ACH44887.1| putative proteasome subunit beta type 3 [Taeniopygia guttata]
gi|197128390|gb|ACH44888.1| putative proteasome subunit beta type 3 [Taeniopygia guttata]
Length = 205
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 105/200 (52%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA++AM G+ C AI D T++ ++ M L L GL D A++
Sbjct: 7 NGGAVLAMRGRGCVAIAADRRFGIQAQTVSTDCQRIFPMGQRLLLGLAGLATDVQSVAQR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E I P TF ++ S LY R+ P + P+IAG P S E F+ +LD
Sbjct: 67 LKFRLNLYELKEGRQIKPQTFMSMVSNLLYERRF-GPYYAEPVIAGLDPVSLEPFICSLD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC DFV G+ + G+ ES W+P + PE LFE SQ ++ A +RD SG G
Sbjct: 126 LIGCPMVTQDFVLSGTCSEQMYGMCESLWEPDMEPEHLFETISQAMLNAVDRDAISGMGV 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
V+V+E DK+T R + RMD
Sbjct: 186 VVHVIEKDKITTRTLKARMD 205
>gi|197128391|gb|ACH44889.1| putative proteasome subunit beta type 3 [Taeniopygia guttata]
Length = 205
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 105/200 (52%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA++AM G+ C AI D T++ ++ M L L GL D A++
Sbjct: 7 NGGAVLAMRGRGCVAIAADRRFGIQAQTVSTDCQRIFPMGQRLLLGLAGLATDVQSVAQR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E I P TF ++ S LY R+ P + P+IAG P S E F+ +LD
Sbjct: 67 LKFRLNLYELKEGRQIKPQTFMSMVSNLLYERRF-GPYYAEPVIAGLDPVSLEPFICSLD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC DFV G+ + G+ ES W+P + PE LFE SQ ++ A +RD SG G
Sbjct: 126 LIGCPMVTQDFVLSGTCSEQMYGMCESLWEPDMEPEHLFETISQAMLNAVDRDAISGMGV 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
V+V+E DK+T R + RMD
Sbjct: 186 VVHVIEKDKITTRTLKARMD 205
>gi|413935900|gb|AFW70451.1| proteasome subunit beta type [Zea mays]
Length = 305
Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 107/200 (53%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G A+VAM GKNCFAI D L TIA +V ++ LY+ GL D ++
Sbjct: 108 NGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFRRVFKVHDKLYIGLSGLATDAQTLYQR 167
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E+ + P+TFA++ S LY ++ P F P+IAG D+ E F+ T+D
Sbjct: 168 LVFRHKLYQLMEERDMKPETFASLVSALLYEKRF-GPYFCQPVIAGL-GDNDEPFICTMD 225
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G + DFV G+A + G ES ++P + PE+LFE SQ + + +RD SGWG
Sbjct: 226 CIGAKELAKDFVVSGTASESLYGACESMYKPNMEPEELFETISQALQASVDRDCLSGWGG 285
Query: 185 TVYVVEPDKVTIRKIATRMD 204
V VV +V R + RMD
Sbjct: 286 YVLVVTHTEVQERVLKGRMD 305
>gi|340520586|gb|EGR50822.1| 20S proteasome, beta subunit [Trichoderma reesei QM6a]
Length = 191
Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 101/193 (52%), Gaps = 2/193 (1%)
Query: 12 MAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTAN 71
M GK+C AI D L TI+ K+ Q ++L GL D ++ +
Sbjct: 1 MVGKDCVAIACDLRLGLQALTISNNFPKIFQYG-DVFLGLTGLATDVSTVSDLFRYKVNM 59
Query: 72 YVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETR 131
Y E+ I+P TFA + S LY R+ P F++P++AG P +G F+ D GC
Sbjct: 60 YRLREERAIAPRTFANLVSSSLYERRF-GPYFVSPVVAGLDPKTGAPFICGFDSIGCIDF 118
Query: 132 KTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEP 191
DF+ G+A + G+ E W+P L P+ LFE SQ ++ A +RD SGWGA VY++E
Sbjct: 119 AKDFIVSGTASEQLFGMCEGLWEPDLEPDALFETISQALLNAVDRDALSGWGAHVYIIEK 178
Query: 192 DKVTIRKIATRMD 204
DKVT R + R D
Sbjct: 179 DKVTKRLLKGRQD 191
>gi|384248553|gb|EIE22037.1| N-terminal nucleophile aminohydrolase [Coccomyxa subellipsoidea
C-169]
Length = 205
Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 106/200 (53%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G AIVAMAGK C AIG D T+A KV+++ L++ GL D +K
Sbjct: 7 NGAAIVAMAGKECVAIGSDLRFGVQFQTLATDYKKVYKIHDKLFIGLAGLGTDAQTMHQK 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E+ I P TF + S LY ++ P F++P+IAG + ++ +D
Sbjct: 67 LKFRHNLYKLREERNIKPSTFGELVSSMLYEKRF-GPYFVSPVIAGLEDKTNVPYICGMD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G DF+ G+A + + G+ ES ++P + PE+LFE +Q ++ +RD SGWGA
Sbjct: 126 TIGAIETANDFMVAGTAPDSLYGMCESMFRPDMEPEELFETVTQCLMSGADRDALSGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VYV+ D V R + RMD
Sbjct: 186 IVYVITKDAVVARTLKGRMD 205
>gi|413954658|gb|AFW87307.1| proteasome subunit beta type [Zea mays]
Length = 204
Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 106/200 (53%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G A+VAM GKNCFAI D L TIA +V ++ LY+ GL D ++
Sbjct: 7 NGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRVFKVHDKLYIGLSGLATDAQTLYQR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E+ + P+TFA++ S LY ++ P F P+IAG D F+ T+D
Sbjct: 67 LVFRHKLYQLREERDMKPETFASLVSALLYEKRF-GPYFCQPVIAGL-GDDNVPFICTMD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G + DFV G+A + G ES ++P + P++LFE SQ + + +RD SGWG
Sbjct: 125 CLGAKELAKDFVVSGTASESLYGACESMYKPNMEPDELFETVSQALNSSIDRDCLSGWGG 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
V +V P +V I +RMD
Sbjct: 185 YVLIVTPTEVREHVIKSRMD 204
>gi|226505280|ref|NP_001141963.1| uncharacterized protein LOC100274112 [Zea mays]
gi|194706600|gb|ACF87384.1| unknown [Zea mays]
Length = 204
Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 106/200 (53%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G A+VAM GKNCFAI D L TIA +V ++ LY+ GL D ++
Sbjct: 7 NGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRVFKVHDKLYIGLSGLATDAQTLYQR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E+ + P+TFA++ S LY ++ P F P+IAG D F+ T+D
Sbjct: 67 LVFRHKLYQLREERDMKPETFASLVSALLYEKRF-GPYFCQPVIAGL-GDDNVPFICTMD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G + DFV G+A + G ES ++P + P++LFE SQ + + +RD SGWG
Sbjct: 125 CLGAKELAKDFVVSGTASESLYGACESMYRPNMEPDELFETVSQALNSSIDRDCLSGWGG 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
V +V P +V I +RMD
Sbjct: 185 YVLIVTPTEVREHVIKSRMD 204
>gi|342890397|gb|EGU89215.1| hypothetical protein FOXB_00168 [Fusarium oxysporum Fo5176]
Length = 191
Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 102/193 (52%), Gaps = 2/193 (1%)
Query: 12 MAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTAN 71
M GK+C AI D L T++ K+ Q ++L GL D ++ +
Sbjct: 1 MVGKDCVAIACDLRLGLQALTVSNNFPKIFQYG-DVFLGLTGLATDVNTVSDLFRYKVNM 59
Query: 72 YVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETR 131
Y E+ I+P TFA + S LY R+ P F++P++AG P +G+ F+ D GC
Sbjct: 60 YRLREERSIAPRTFANLVSSSLYERRF-GPYFVSPVVAGLDPKTGKPFICGFDSIGCIDF 118
Query: 132 KTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEP 191
DF+ G+A + G+ E W+P L P+ LFE SQ ++ A +RD SGWGA VY++E
Sbjct: 119 AKDFIVSGTASEQLFGMCEGLWEPDLEPDALFETISQSLLNAVDRDALSGWGAHVYIIEK 178
Query: 192 DKVTIRKIATRMD 204
DKVT R + R D
Sbjct: 179 DKVTKRLLKGRQD 191
>gi|413943569|gb|AFW76218.1| hypothetical protein ZEAMMB73_756098 [Zea mays]
Length = 204
Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 106/200 (53%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G A+VAM GKNCFAI D L TIA +V ++ LY+ GL D ++
Sbjct: 7 NGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRVFKIHDKLYIGLSGLATDAQTLYQR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E+ + P+TFA++ S LY ++ P F P+IAG D F+ T+D
Sbjct: 67 LVFRHKLYQLREERDMKPETFASLVSALLYEKRF-GPYFCQPVIAGL-GDDNVPFICTMD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G + DFV G+A + G ES ++P + P++LFE SQ + + +RD SGWG
Sbjct: 125 CLGAKELAKDFVVSGTASESLYGACESMYKPDMQPDELFETISQALNSSVDRDCLSGWGG 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
V +V P +V I +RMD
Sbjct: 185 YVLIVTPTEVREHVIKSRMD 204
>gi|357509159|ref|XP_003624868.1| Proteasome subunit beta type [Medicago truncatula]
gi|355499883|gb|AES81086.1| Proteasome subunit beta type [Medicago truncatula]
Length = 204
Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 107/200 (53%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G A+VAM GKNCFAI D L TIA ++ ++ L++ GL D ++
Sbjct: 7 NGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDKLFIGLSGLATDSQTLYQR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E+ + P+TFA++ S Y ++ P F P+IAG D + F+ T+D
Sbjct: 67 LVFRHKLYQLREERDMKPETFASLVSSMQYEKRF-GPYFCQPVIAGL-GDDDKPFICTMD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G + DFV G+A + G ES ++P + E+LFE SQ ++ + +RD SGWG
Sbjct: 125 AIGAKELAKDFVVAGTASESLYGACESMFKPDMEAEELFETISQALLSSVDRDCLSGWGG 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VYVV P +V R + RMD
Sbjct: 185 HVYVVTPTEVKERILKGRMD 204
>gi|242096488|ref|XP_002438734.1| hypothetical protein SORBIDRAFT_10g025190 [Sorghum bicolor]
gi|241916957|gb|EER90101.1| hypothetical protein SORBIDRAFT_10g025190 [Sorghum bicolor]
Length = 204
Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 106/200 (53%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G A+VAM GKNCFAI D L TIA +V ++ LY+ GL D ++
Sbjct: 7 NGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRVFKIHDKLYIGLSGLATDAQTLYQR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E+ + P+TFA++ S LY ++ P F P+IAG D F+ T+D
Sbjct: 67 LVFRHKLYQLREERDMKPETFASLVSALLYEKRF-GPYFCQPVIAGL-GDDDVPFICTMD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G + DFV G+A + G ES ++P + P++LFE SQ + + +RD SGWG
Sbjct: 125 CIGAKELAKDFVVSGTASESLYGACESMYKPNMEPDELFETISQALNSSVDRDCLSGWGG 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
V +V P +V I +RMD
Sbjct: 185 YVLIVTPTEVREHVIKSRMD 204
>gi|388491594|gb|AFK33863.1| unknown [Medicago truncatula]
Length = 206
Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 107/200 (53%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G A+VAM GKNCFAI D L TIA ++ ++ L++ GL D ++
Sbjct: 7 NGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDKLFIGLSGLATDSQTLYQR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E+ + P+TFA++ S Y ++ P F P+IAG D + F+ T+D
Sbjct: 67 LVFRHKLYQLREERDMKPETFASLVSSMQYEKRF-GPYFCQPVIAGL-GDDDKPFICTMD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G + DFV G+A + G ES ++P + E+LFE SQ ++ + +RD SGWG
Sbjct: 125 AIGAKELAKDFVVAGTASESLYGACESMFKPDMEAEELFETISQALLSSVDRDCLSGWGG 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VYVV P +V R + RMD
Sbjct: 185 HVYVVTPTEVKERILKGRMD 204
>gi|388513745|gb|AFK44934.1| unknown [Medicago truncatula]
Length = 204
Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 107/200 (53%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G A+VAM GKNCFAI D L TIA ++ ++ L++ GL D ++
Sbjct: 7 NGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDKLFIGLSGLATDSQTLYQR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E+ + P+TFA++ S Y ++ P F P+IAG D + F+ T+D
Sbjct: 67 LVFRHKLYQLREERDMRPETFASLVSSMQYEKRF-GPYFCQPVIAGL-GDDDKPFICTMD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G + DFV G+A + G ES ++P + E+LFE SQ ++ + +RD SGWG
Sbjct: 125 AIGAKELAKDFVVAGTASESLYGACESMFKPDMEAEELFETISQALLSSVDRDCLSGWGG 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VYVV P +V R + RMD
Sbjct: 185 HVYVVTPTEVKERILKGRMD 204
>gi|313228966|emb|CBY18118.1| unnamed protein product [Oikopleura dioica]
Length = 203
Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 104/200 (52%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG+IV M+G NC I D+ Q TI+ K+ +++ +++ GL D K
Sbjct: 6 NGGSIVGMSGDNCVCIASDNRYGQQLHTISTDFPKIFKITDKIFIGLSGLATDIQTVLNK 65
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ + Y E +SP F + S LY R+ P F P+I D G L +D
Sbjct: 66 IKYKVNMYELRENRKMSPKCFKTMVSNLLYERRF-GPFFAEPVIVAL-NDDGTTMLCGMD 123
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G D+V G+A N + G+ E++W+P + E+LFE SQ ++ C+R+ SGWGA
Sbjct: 124 CLGAAESPKDYVVAGTAANEMHGLAEAYWRPDMPAEELFECVSQTMLSGCDRNAASGWGA 183
Query: 185 TVYVVEPDKVTIRKIATRMD 204
TV +V+ DK+ RK+ RMD
Sbjct: 184 TVTIVQKDKIITRKLKARMD 203
>gi|46108708|ref|XP_381412.1| hypothetical protein FG01236.1 [Gibberella zeae PH-1]
gi|408398859|gb|EKJ77985.1| hypothetical protein FPSE_01773 [Fusarium pseudograminearum CS3096]
Length = 191
Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 102/193 (52%), Gaps = 2/193 (1%)
Query: 12 MAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTAN 71
M GK+C AI D L T++ K+ Q ++L GL D ++ +
Sbjct: 1 MVGKDCVAIACDLRLGLQALTVSNDFPKIFQYG-DVFLGLTGLATDVNTVSDLFRYKVNM 59
Query: 72 YVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETR 131
Y E+ I+P TFA + S LY R+ P F++P++AG P +G+ F+ D GC
Sbjct: 60 YRLREERDIAPRTFANLVSSSLYERRF-GPYFVSPVVAGLDPKTGKPFICGFDSIGCIDF 118
Query: 132 KTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEP 191
DF+ G+A + G+ E W+P L P+ LFE SQ ++ A +RD SGWGA VY++E
Sbjct: 119 AKDFIVSGTASEQLFGMCEGLWEPDLEPDALFETISQSLLNAVDRDALSGWGAHVYIIEK 178
Query: 192 DKVTIRKIATRMD 204
DKVT R + R D
Sbjct: 179 DKVTKRLLKGRQD 191
>gi|217075224|gb|ACJ85972.1| unknown [Medicago truncatula]
Length = 204
Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 107/200 (53%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G A+VAM GKNCFAI D L TIA ++ ++ L++ GL D ++
Sbjct: 7 NGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDKLFIGLSGLATDSQTLYQR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E+ + P+TFA++ S Y ++ P F P+IAG D + F+ T+D
Sbjct: 67 LVFRHKLYQLREECDMKPETFASLVSSMQYEKRF-GPYFCQPVIAGL-GDDDKPFICTMD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G + DFV G+A + G ES ++P + E+LFE SQ ++ + +RD SGWG
Sbjct: 125 AIGAKELAKDFVVAGTASESLYGACESMFKPDMEAEELFETISQALLSSVDRDCLSGWGG 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VYVV P +V R + RMD
Sbjct: 185 HVYVVTPTEVKERILKGRMD 204
>gi|50556674|ref|XP_505745.1| YALI0F22341p [Yarrowia lipolytica]
gi|49651615|emb|CAG78556.1| YALI0F22341p [Yarrowia lipolytica CLIB122]
Length = 206
Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 107/200 (53%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG+ VAM GK+C AI D + ++ KV ++YL GL D E
Sbjct: 8 NGGSCVAMVGKDCVAIACDLRMGSQGLGVSNDFEKVFNYGDNVYLGLTGLATDVQTLHEV 67
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+T Y +E+ I P+TFA + S LY ++ P F+ PI+AG + + F+ D
Sbjct: 68 FREKTNLYKMAEERQIEPETFANLVSSTLYEKRF-GPYFVGPIVAGINSKTEKPFICGFD 126
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC DF+ G+A +M+ G+ ES WQP L PE LF CSQ ++ A +RD GWGA
Sbjct: 127 LIGCIDFAKDFIVSGTASDMLYGMCESLWQPDLEPEDLFNTCSQALMCAMDRDPLGGWGA 186
Query: 185 TVYVVEPDKVTIRKIATRMD 204
V+++ DKV + + TR D
Sbjct: 187 IVWIITKDKVVKKLLKTRQD 206
>gi|290993280|ref|XP_002679261.1| predicted protein [Naegleria gruberi]
gi|284092877|gb|EFC46517.1| predicted protein [Naegleria gruberi]
Length = 205
Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 103/200 (51%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G IVAM GKNC AI D T+ K+ ++ L++ GL D EK
Sbjct: 7 NGAGIVAMTGKNCVAIAADTRYGIRQQTVGTDMQKIFKIHDKLFIGLNGLATDVQTVNEK 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E+ I P +FA + S LY ++ P FI P+IAG + F+ D
Sbjct: 67 LKFRMNMYNLKEERDIKPSSFANLMSNILYEKRF-GPWFIEPVIAGLEGPENKPFICAQD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ G +FV G+ + G+ ES ++P + PE LFEV SQ ++ A +RD SGWGA
Sbjct: 126 LIGAPCFTDNFVVSGTCSEALYGMCESLYKPDMEPEDLFEVISQCLLAAVDRDCISGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
V+V+ PD +T +++ R D
Sbjct: 186 VVHVITPDSITTKRLKVRQD 205
>gi|115469154|ref|NP_001058176.1| Os06g0643100 [Oryza sativa Japonica Group]
gi|17380214|sp|Q9LST7.1|PSB3_ORYSJ RecName: Full=Proteasome subunit beta type-3; AltName: Full=20S
proteasome alpha subunit C; AltName: Full=20S proteasome
subunit beta-3
gi|8671506|dbj|BAA96836.1| beta 3 subunit of 20S proteasome [Oryza sativa Japonica Group]
gi|51535468|dbj|BAD37365.1| 20S proteasome subunit beta type 3 [Oryza sativa Japonica Group]
gi|113596216|dbj|BAF20090.1| Os06g0643100 [Oryza sativa Japonica Group]
gi|218198634|gb|EEC81061.1| hypothetical protein OsI_23870 [Oryza sativa Indica Group]
gi|222635966|gb|EEE66098.1| hypothetical protein OsJ_22127 [Oryza sativa Japonica Group]
Length = 204
Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 106/200 (53%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G A+VAM GKNCFAI D L T+A +V ++ LY+ GL D ++
Sbjct: 7 NGSAVVAMVGKNCFAIASDRRLGVQLQTVATDFQRVFKIHDKLYIGLSGLATDAQTLYQR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E+ + P TFA++ S LY ++ P F P+IAG D+ E F+ T+D
Sbjct: 67 LVFRHKLYQLREERDMKPQTFASLVSALLYEKRF-GPYFCQPVIAGLGEDN-EPFICTMD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G + DFV G+A + G ES ++P + PE+LFE SQ + + +RD SGWG
Sbjct: 125 CIGAKELAKDFVVSGTASESLYGACESMYKPNMEPEELFETISQALQSSVDRDCLSGWGG 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
V +V P +V I RMD
Sbjct: 185 FVLLVTPTEVKECVIKGRMD 204
>gi|344232930|gb|EGV64803.1| proteasome-domain-containing protein [Candida tenuis ATCC 10573]
gi|344232931|gb|EGV64804.1| hypothetical protein CANTEDRAFT_113576 [Candida tenuis ATCC 10573]
Length = 205
Score = 132 bits (333), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 103/200 (51%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG+ VAM GK+C AI D L +A K+ ++ + L GL D E
Sbjct: 8 NGGSAVAMVGKDCVAIACDLRLGSQSLGLANNFEKIFTINDKVMLGLTGLATDVTTLNEV 67
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ Y E+ I P TFA + S LY ++ P F P++AG ++ + F+ D
Sbjct: 68 FRFKNNLYELREERKIEPQTFANLVSSTLYEKRF-GPYFCGPVVAGLNKEN-KPFICGFD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC DF+ G+A + G+ ES ++P L + LFE SQ ++ A +RDT SGWGA
Sbjct: 126 LIGCIDFAKDFIVSGTASEQLYGMCESLYEPNLEADDLFETISQALLNAADRDTMSGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VYVV D VT R + TR D
Sbjct: 186 VVYVVTKDSVTKRVLKTRQD 205
>gi|154340181|ref|XP_001566047.1| putative proteasome beta 3 subunit [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134063366|emb|CAM39542.1| putative proteasome beta 3 subunit [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 205
Score = 132 bits (333), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 108/199 (54%), Gaps = 1/199 (0%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
GG+++AMAGK CF I D L + TI+ K+H ++ + GL D FA K+
Sbjct: 8 GGSVMAMAGKECFVIISDKRLGEQLKTISMEVPKLHIVNDSVVYGLTGLRTDQQTFANKV 67
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
R Y E+ I+ FAA+ LY + P F+ P+I +GEV+L D+
Sbjct: 68 EFRINMYKLREERDITGKAFAAMIESMLYEARF-GPWFVEPVIGSIDKTTGEVYLCATDL 126
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
G D+V G+A + G+ E+ W+PG+SPE++FE+ +Q ++ AC+RD+ SG+GA
Sbjct: 127 IGAPCEPEDYVCAGTAAESLHGMCEALWRPGMSPEEVFEIAAQAMLSACDRDSLSGYGAV 186
Query: 186 VYVVEPDKVTIRKIATRMD 204
+V +K+ R I R D
Sbjct: 187 ALIVTKEKIITRLIKGRKD 205
>gi|115398103|ref|XP_001214643.1| proteasome component PUP3 [Aspergillus terreus NIH2624]
gi|114192834|gb|EAU34534.1| proteasome component PUP3 [Aspergillus terreus NIH2624]
Length = 192
Score = 132 bits (332), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 100/193 (51%), Gaps = 1/193 (0%)
Query: 12 MAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTAN 71
M GK+C AI D L T++ K+ P +L GL D ++ + +
Sbjct: 1 MVGKDCVAIACDLRLGMQALTVSNNFPKIFNYGPSTFLGLTGLATDVSTVSDLLRYKVNM 60
Query: 72 YVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETR 131
Y E+ I+P T A + S LY R+ P F++P++AG +G+ F+ D GC
Sbjct: 61 YRLREERNIAPQTLANLVSSSLYERRF-GPFFVSPVVAGINYTTGKPFICGFDSIGCIDF 119
Query: 132 KTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEP 191
DF+ G+A + G ES ++ LSPE LFE SQ ++ A +RD SGWGA VY++E
Sbjct: 120 AKDFIVSGTASEQLFGTCESLYEQDLSPEDLFETISQAMLSAVDRDALSGWGAQVYIIEK 179
Query: 192 DKVTIRKIATRMD 204
DKVT R + R D
Sbjct: 180 DKVTKRLLKGRQD 192
>gi|312067975|ref|XP_003136996.1| proteasome subunit beta type 3 [Loa loa]
Length = 192
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 101/193 (52%), Gaps = 1/193 (0%)
Query: 12 MAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTAN 71
MAG +C I D L + TIA KVH++ +Y+ G +D +K+T R
Sbjct: 1 MAGNDCVCIASDLRLGEQMTTIATNMKKVHKLGEKVYIGLGGFHSDAKTVLDKITFRKNL 60
Query: 72 YVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETR 131
Y E I P+ A + S LY + F P+IAG P + + ++ +D GC +
Sbjct: 61 YELRENRKIKPEVAAVMVSNLLYQHRF-GGYFTEPLIAGLDPTTNKPYICAMDTIGCISA 119
Query: 132 KTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEP 191
DFVA G+ ++G+ E FW+ G++ ++LFE +Q ++ A ERD SGWG VY +
Sbjct: 120 PNDFVAVGTGTEYLLGVCEGFWKEGMNSDELFEATAQSMLSAMERDAASGWGVIVYTITK 179
Query: 192 DKVTIRKIATRMD 204
DKV ++ I RMD
Sbjct: 180 DKVNVKTIKARMD 192
>gi|330925823|ref|XP_003301210.1| hypothetical protein PTT_12656 [Pyrenophora teres f. teres 0-1]
gi|311324271|gb|EFQ90697.1| hypothetical protein PTT_12656 [Pyrenophora teres f. teres 0-1]
Length = 191
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 100/193 (51%), Gaps = 2/193 (1%)
Query: 12 MAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTAN 71
M GK+C AI D L T++ K+ Q ++L GL D ++ +
Sbjct: 1 MVGKDCVAIACDLRLGMQALTVSNNFPKIFQYG-DVFLGLTGLATDVSTVSDLFRYKVNM 59
Query: 72 YVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETR 131
Y E+ ISP T A + S LY ++ P FI+P+IAG SG+ F+ D GC
Sbjct: 60 YRLREERNISPQTMANLVSSSLYEKRF-GPYFISPVIAGINQTSGKPFICGFDSIGCIDF 118
Query: 132 KTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEP 191
DF+ G+A + + G E W+P L PE LFE SQ ++ A +RD SGWGA VY++E
Sbjct: 119 AKDFIVSGTASDQLFGTCEGLWEPDLGPEDLFETISQALLNAVDRDALSGWGAHVYIIEK 178
Query: 192 DKVTIRKIATRMD 204
DKVT R + R D
Sbjct: 179 DKVTKRLLKGRQD 191
>gi|255083731|ref|XP_002508440.1| predicted protein [Micromonas sp. RCC299]
gi|226523717|gb|ACO69698.1| predicted protein [Micromonas sp. RCC299]
Length = 207
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 109/206 (52%), Gaps = 4/206 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVD-HLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N G AI+AM GK C AI D + T A K++++ HLY+ GL D
Sbjct: 4 MSYN-GAAIIAMCGKECVAIASDLRFGINQQQTTAVDMKKIYKIHDHLYVGLSGLATDQA 62
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSG-EV 118
A++ R Y E + P+TFA + S LY ++ P + PI+AG +G +
Sbjct: 63 TLAQRFKFRHNMYELRESRKMRPETFANLVSTMLYEKRF-GPYYAEPIVAGLDATNGYKP 121
Query: 119 FLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDT 178
F++ +D+ G +FV G+ + + G+ ES ++P L PE+LFEV +Q ++ RD
Sbjct: 122 FITGMDLIGAMAPTDNFVVCGNNEESLFGVCESMYKPDLEPEELFEVIAQCILAGVNRDC 181
Query: 179 KSGWGATVYVVEPDKVTIRKIATRMD 204
SGWG V+V+ DKV R + RMD
Sbjct: 182 LSGWGGVVHVISKDKVITRTLKGRMD 207
>gi|452824977|gb|EME31976.1| proteasome beta subunit [Galdieria sulphuraria]
Length = 206
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 105/200 (52%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG ++AMAG NC AI D TI ++ +++ L L GL D +
Sbjct: 9 NGGCVLAMAGDNCVAIAADRRFGVQQTTIGTDTTRIFKINDRLMLGLTGLRTDVTTLYNR 68
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
R Y E+ I P +FA + + LY+R+ SP F+ P++AG + GE +L D
Sbjct: 69 FVQRLNLYRLREEREIKPASFANMVASTLYSRRF-SPYFVEPVVAGL-TEKGEPYLCAQD 126
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ G DFV G+ + G E+FW+P LSP +LFEV SQ ++ A +RD SGWGA
Sbjct: 127 LLGAPLFAEDFVVSGTCAESLYGTSETFWKPNLSPAELFEVTSQSLLAAVDRDCLSGWGA 186
Query: 185 TVYVVEPDKVTIRKIATRMD 204
V+++ + + + + RMD
Sbjct: 187 IVHMITLNGIETKVLKARMD 206
>gi|405971643|gb|EKC36468.1| Proteasome subunit beta type-3 [Crassostrea gigas]
Length = 161
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 92/162 (56%), Gaps = 1/162 (0%)
Query: 43 MSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPL 102
M P LY+ PGL D +++ R Y E I P TF ++ S LY R+ P
Sbjct: 1 MGPRLYIGLPGLATDVQTVHQRLQFRLNLYELRENRRIKPKTFLSMVSNLLYERRF-GPY 59
Query: 103 FINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQL 162
F+ P+IAG P + E F++++D+ GC DFV G+ + G+ ES W+P + P++L
Sbjct: 60 FVEPVIAGLDPKTFEPFIASMDLIGCPMVTDDFVVSGTCSEQMYGMCESVWEPNMDPQEL 119
Query: 163 FEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
FE SQ ++ A +RD SGWG V+++E D+VT ++ RMD
Sbjct: 120 FESISQALLNAVDRDAVSGWGGIVHIIEKDQVTTTELKGRMD 161
>gi|154308476|ref|XP_001553574.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
Length = 198
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 100/199 (50%), Gaps = 7/199 (3%)
Query: 12 MAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTAN 71
M GK+C AI D L T++ K+ P +YL GL D ++ +
Sbjct: 1 MVGKDCVAIACDLRLGLQALTVSNNFPKIFSYGPSVYLGLTGLATDVSTVSDLFRYKVNM 60
Query: 72 YVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETR 131
Y E+ ISP T A + S LY R+ P F++P++AG +G+ F+ D GC
Sbjct: 61 YRLREERNISPTTMANLVSSSLYERRF-GPFFVSPVVAGLDQKTGKPFICGFDSIGCIDF 119
Query: 132 KTDFVAGGSAQNMIMGIGESFWQPGL------SPEQLFEVCSQVVIQACERDTKSGWGAT 185
DF+ G+A + + G E W+P L PE LFE SQ ++ A +RD SGWGA
Sbjct: 120 AKDFIVSGTASDQLFGTCEGLWEPDLLNSQIQGPEDLFETISQALLNAVDRDALSGWGAH 179
Query: 186 VYVVEPDKVTIRKIATRMD 204
VY++E DKVT R + R D
Sbjct: 180 VYIIEKDKVTKRLLKGRQD 198
>gi|300120261|emb|CBK19815.2| unnamed protein product [Blastocystis hominis]
Length = 205
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 111/204 (54%), Gaps = 3/204 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQ 60
MS N G A++AM GKNC AI D L T+ K+++M+ +++ GL +D
Sbjct: 5 MSYN-GAAVIAMKGKNCVAIASDLRLGAQFQTVDCNFQKIYKMTDQIFIGFNGLQSDAQT 63
Query: 61 FAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFL 120
FA+ +T +Y E ISP+ F ++ + Y + P F+ P+IAG +GE ++
Sbjct: 64 FAQLLTYEVNSYKLRENRDISPEAFGSLVRTKQYQHRW-GPYFVEPVIAGL-DKNGEPYV 121
Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKS 180
+ +D G F + + G E+F++ + PE+LFEV SQ ++ + +RD S
Sbjct: 122 NAMDTIGAGIYTPKFAISATCAESLYGTCEAFYKDNMEPEELFEVISQCLLASVDRDAYS 181
Query: 181 GWGATVYVVEPDKVTIRKIATRMD 204
GWG VY++ PD++ R++ TRMD
Sbjct: 182 GWGGIVYIITPDRIIERRLKTRMD 205
>gi|324524031|gb|ADY48349.1| Proteasome subunit beta type-3 [Ascaris suum]
Length = 205
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 104/204 (50%), Gaps = 2/204 (0%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQ 60
MS N GG I+AMAG C I D L + TIA KVH++ +Y+ G +D
Sbjct: 4 MSYN-GGTILAMAGNECVCIATDLRLGEQMTTIATNVKKVHKLGDRVYIGLGGFYSDAKT 62
Query: 61 FAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFL 120
+K+ R Y E I P+ A + S LY + L P++AG P + + ++
Sbjct: 63 VLDKILFRKNLYELRENRKIKPEVAATMISNLLYQHRFGGYL-TEPLVAGLDPVTNKAYI 121
Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKS 180
+D GC DFVA G+ ++G+ E FW ++ ++LFE +Q ++ A ERD S
Sbjct: 122 CGMDTIGCIAAPKDFVAVGTGTEYLLGVCEGFWHENMNADELFEATAQSMLSAMERDAAS 181
Query: 181 GWGATVYVVEPDKVTIRKIATRMD 204
GWG +Y + +KV I+ I RMD
Sbjct: 182 GWGVLIYTITKNKVNIKTIKARMD 205
>gi|363752627|ref|XP_003646530.1| hypothetical protein Ecym_4692 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890165|gb|AET39713.1| hypothetical protein Ecym_4692 [Eremothecium cymbalariae
DBVPG#7215]
Length = 191
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 99/193 (51%), Gaps = 2/193 (1%)
Query: 12 MAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTAN 71
M GK+C AI D L ++ K+ H+++ GL D E +T
Sbjct: 1 MTGKDCVAIACDLRLGSQSLGVSNRFEKIFNYG-HVFVGLTGLATDVTTLYETFRYKTNL 59
Query: 72 YVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETR 131
Y E PI P TF+ + S LY ++ P F+ P++AG S + +++ D+ GC
Sbjct: 60 YKLREDRPIEPSTFSHLVSSTLYEKRF-GPYFVGPVVAGIDTISQKPYIAGFDLIGCIEE 118
Query: 132 KTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEP 191
DF+ G+A + G+ ES ++P L E LFE SQ ++ A +RD SGWGA VY++E
Sbjct: 119 SKDFIVSGTASEQLFGMCESLYEPNLGSEDLFETISQALLNAADRDALSGWGAVVYLIEK 178
Query: 192 DKVTIRKIATRMD 204
DKV R + TR D
Sbjct: 179 DKVVKRYLKTRQD 191
>gi|145341760|ref|XP_001415971.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576194|gb|ABO94263.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 206
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 110/206 (53%), Gaps = 5/206 (2%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVD-HLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N G A++AM GK+C AI D L + + T A +K+H++ LYL GL AD +
Sbjct: 4 MSYN-GAAVIAMTGKDCVAIASDLRLGINQNQTAAVDYSKLHKIHDRLYLGLTGLIADQL 62
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
A+K+ + Y E +SP F A+ S LY ++ SP + P++AG D G+ +
Sbjct: 63 TLAQKLKFKHDMYELRENRVMSPKVFGAVVSATLYEKRF-SPYYTEPVVAGLDAD-GKPY 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
++++D+ G + DFV G + G+ ESF++ L PE LFEV S + RD
Sbjct: 121 ITSMDLIGADASTDDFVVAGDNVESLFGVCESFYKRDLDPEALFEVISHCLTSGVNRDCL 180
Query: 180 SGWGATVYVVEPDKVTI-RKIATRMD 204
SGWG V VV T R + +RMD
Sbjct: 181 SGWGGVVTVVTKGNGTFTRTLKSRMD 206
>gi|322705678|gb|EFY97262.1| proteasome component PUP3 [Metarhizium anisopliae ARSEF 23]
Length = 191
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 101/193 (52%), Gaps = 2/193 (1%)
Query: 12 MAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTAN 71
M GK+C AI D L T++ K+ Q ++L GL D A+ +
Sbjct: 1 MVGKDCVAIACDLRLGLQALTVSNNFPKIFQYG-DVFLGLTGLATDVGTVADLFRYKVNM 59
Query: 72 YVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETR 131
Y E+ I+P TFA + S LY R+ P F++P++AG P +G+ F+ D GC
Sbjct: 60 YRLREERAIAPRTFANLVSSSLYERRF-GPYFVSPVVAGLDPKTGKPFICGFDSIGCIDF 118
Query: 132 KTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEP 191
DF+ G+A + G+ E W+ + P+ LFE SQ ++ A +RD SGWGA VY++E
Sbjct: 119 AKDFIVSGTASEQLFGMCEGLWEEDMGPDALFETISQALLNAVDRDALSGWGAHVYIIEK 178
Query: 192 DKVTIRKIATRMD 204
DKVT R + R D
Sbjct: 179 DKVTKRLLKGRQD 191
>gi|402467005|gb|EJW02389.1| hypothetical protein EDEG_03183 [Edhazardia aedis USNM 41457]
Length = 204
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 115/205 (56%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQ 60
+S + GG+++A+ +N A D L QG+FT + K+H+++ L++ P D Q
Sbjct: 3 ISTHYGGSVLAVKSRNSIAFLTDLRLGQGNFTTSMNFPKIHKITSKLFVGLPQFIPDA-Q 61
Query: 61 FAEKMTLRTAN-YVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
F K ++ N +V +E P+ P+ + S+ LY+R+ T PLF +P+IAGF GE +
Sbjct: 62 FLLKKIIKNHNLFVLNENRPMEPEELTNMVSYILYSRRFT-PLFTSPVIAGFN-KFGEPY 119
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+S +D GC DFV G+A+ + G+ E+ WQ L E LF + Q A +RD
Sbjct: 120 VSGMDQIGCLDEPEDFVVSGTAERNLAGMCEALWQKDLEGEDLFVMAVQAFANAIDRDAL 179
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SGWG ++++ +KV R++ R+D
Sbjct: 180 SGWGIEGFLIQNEKVLQRRVRMRLD 204
>gi|207345904|gb|EDZ72572.1| YER094Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 187
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 96/182 (52%), Gaps = 2/182 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG +VAM GK+C AI D L ++ K+ H++L GL D E
Sbjct: 8 NGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEM 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+T Y E+ I P+TF + S LY R+ P F+ P++AG SG+ F++ D
Sbjct: 67 FRYKTNLYKLKEERAIEPETFTQLVSSSLYERRF-GPYFVGPVVAGINSKSGKPFIAGFD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC DF+ G+A + + G+ ES ++P L PE LFE SQ ++ A +RD SGWGA
Sbjct: 126 LIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADRDALSGWGA 185
Query: 185 TV 186
V
Sbjct: 186 VV 187
>gi|440804462|gb|ELR25339.1| 20S proteasome subunit beta 3, putative [Acanthamoeba castellanii
str. Neff]
Length = 192
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 98/193 (50%), Gaps = 1/193 (0%)
Query: 12 MAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTAN 71
M GKNC AI D T+A KV Q++ ++ GL +D + R
Sbjct: 1 MTGKNCVAIACDKRFGIQHQTLAFNMPKVKQLNSKTFVGLSGLVSDAQTLFNRFQFRHNL 60
Query: 72 YVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETR 131
Y E + P+TFA + S LY ++ P F+ P+I G + F++ +D+ G
Sbjct: 61 YKLRENREMDPETFANLVSTMLYEKRF-GPYFVEPVICGLSGPDNKPFIAAMDLIGAPLL 119
Query: 132 KTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEP 191
D V G+ + G+ ES W+P L P+ LFE SQV++ A RD SGWGA VY++ P
Sbjct: 120 AKDSVVAGTCSEALYGMTESLWKPDLEPDDLFETISQVLLSAVNRDAFSGWGAVVYIMTP 179
Query: 192 DKVTIRKIATRMD 204
D+V ++I RMD
Sbjct: 180 DEVITKEIKCRMD 192
>gi|356515898|ref|XP_003526634.1| PREDICTED: LOW QUALITY PROTEIN: proteasome subunit beta
type-3-A-like [Glycine max]
Length = 204
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 109/201 (54%), Gaps = 4/201 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
+G A+VAM GKNCFAI D L VQ T +++ ++ ++ L++ GL D +
Sbjct: 7 NGSALVAMVGKNCFAIASDRRLGVQPQTTATDFQ-RISKIHDKLFIGLXGLATDAQTLYQ 65
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
++ Y E+ + P TFA++ S LY + P F P+IAG D + F+ T+
Sbjct: 66 RLLFGHKLYQLREERDMKPQTFASLVSAILYENRF-GPYFCQPVIAGL-GDDDKPFICTM 123
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWG 183
D G + DF G+A + G ES ++P + PE+LFE+ SQ ++ + +RD SGWG
Sbjct: 124 DAIGAKELAKDFAVAGTASESLYGACESMFKPDMEPEELFEMISQALLSSVDRDCLSGWG 183
Query: 184 ATVYVVEPDKVTIRKIATRMD 204
+YVV P +V R + RMD
Sbjct: 184 GHIYVVTPTEVKERILKGRMD 204
>gi|18395025|ref|NP_564149.1| proteasome subunit beta type-3-A [Arabidopsis thaliana]
gi|288558823|sp|Q9XI05.2|PSB3A_ARATH RecName: Full=Proteasome subunit beta type-3-A; AltName: Full=20S
proteasome beta subunit C-1; AltName: Full=Proteasome
component T
gi|17473525|gb|AAL38246.1| proteasome subunit [Arabidopsis thaliana]
gi|21387087|gb|AAM47947.1| proteasome subunit [Arabidopsis thaliana]
gi|110740894|dbj|BAE98543.1| 20S proteasome beta subunit PBC2 like protein [Arabidopsis
thaliana]
gi|332192025|gb|AEE30146.1| proteasome subunit beta type-3-A [Arabidopsis thaliana]
Length = 204
Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 107/200 (53%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G A+VAM GKNCFAI D L TIA ++ ++ +++ GL D ++
Sbjct: 7 NGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRVFIGLSGLATDVQTLYQR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E+ + P+TFA++ S LY ++ P P+IAG D + F+ T+D
Sbjct: 67 LVFRHKLYQLREERDMKPETFASLVSAILYEKRF-GPYLCQPVIAGL-GDDDKPFICTMD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G + DFV G+A + G E+ ++P + E+LFE SQ ++ + +RD SGWG
Sbjct: 125 SIGAKELAKDFVVSGTASESLYGACEAMYKPDMEAEELFETISQALLSSVDRDCLSGWGG 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY+V P ++ R + RMD
Sbjct: 185 HVYIVTPTEIKERILKGRMD 204
>gi|297845150|ref|XP_002890456.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|5263324|gb|AAD41426.1|AC007727_15 Identical to gb|Y13173 Arabidopsis thaliana mRNA for proteasome
subunit. EST gb|T76747 comes from this gene [Arabidopsis
thaliana]
gi|12744997|gb|AAK06878.1|AF344327_1 putative 20S proteasome beta subunit PBC2 [Arabidopsis thaliana]
gi|297336298|gb|EFH66715.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 204
Score = 129 bits (324), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 107/200 (53%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G A+VAM GKNCFAI D L TIA ++ ++ +++ GL D ++
Sbjct: 7 NGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRVFIGLSGLATDVQTLYQR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E+ + P+TFA++ S LY ++ P P+IAG D + F+ T+D
Sbjct: 67 LVFRHKLYQLREERDMKPETFASLVSAILYEKRF-GPYLCQPVIAGL-GDDDKPFICTMD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G + DFV G+A + G E+ ++P + E+LFE SQ ++ + +RD SGWG
Sbjct: 125 SIGAKELAKDFVVSGTASESLYGACEAMYKPDMEAEELFETISQALLSSVDRDCLSGWGG 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY+V P ++ R + RMD
Sbjct: 185 HVYIVTPTEIKERILKGRMD 204
>gi|322701542|gb|EFY93291.1| proteasome component PUP3 [Metarhizium acridum CQMa 102]
Length = 191
Score = 129 bits (323), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 101/193 (52%), Gaps = 2/193 (1%)
Query: 12 MAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTAN 71
M GK+C AI D L T++ K+ Q ++L GL D A+ +
Sbjct: 1 MVGKDCVAIACDLRLGLQALTVSNNFPKIFQYG-DVFLGLTGLATDVSTVADLFRYKVNM 59
Query: 72 YVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETR 131
Y E+ I+P TFA + S LY R+ P F++P++AG P +G+ F+ D GC
Sbjct: 60 YRLREERAIAPRTFANLVSSSLYERRF-GPYFVSPVVAGLDPKTGKPFICGFDSIGCIDF 118
Query: 132 KTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEP 191
DF+ G+A + G+ E W+ + P+ LFE SQ ++ A +RD SGWGA VY++E
Sbjct: 119 AKDFIVSGTASEQLFGMCEGLWEEDMGPDALFETISQALLNAVDRDALSGWGAHVYIIEK 178
Query: 192 DKVTIRKIATRMD 204
+KVT R + R D
Sbjct: 179 NKVTKRLLKGRQD 191
>gi|196476700|gb|ACG76215.1| proteasome beta 3 subunit [Amblyomma americanum]
Length = 182
Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/181 (35%), Positives = 98/181 (54%), Gaps = 2/181 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQ 60
MS N GG ++AM GK+C AI D L TIA ++ +M P LY PGL D
Sbjct: 4 MSYN-GGVVLAMKGKDCVAIAADRRLGARGHTIALDFQRIFEMGPKLYCGLPGLATDTQT 62
Query: 61 FAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFL 120
A+++ R Y E I+P T ++ S LY R+ P F+ P++AG P S E ++
Sbjct: 63 VAQRLKFRINLYELREGRKITPKTLGSVISNLLYERRF-GPYFVQPVVAGLDPVSNEPYI 121
Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKS 180
+D+ GC DFV G+ + G+ E+ W+P + P++LFE +Q ++ A +RD+ S
Sbjct: 122 CGMDLIGCIDSPKDFVVAGTCEEQCYGMCETLWEPDMGPDELFEATAQALMNAFDRDSSS 181
Query: 181 G 181
G
Sbjct: 182 G 182
>gi|346978239|gb|EGY21691.1| proteasome component PUP3 [Verticillium dahliae VdLs.17]
Length = 222
Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 103/200 (51%), Gaps = 13/200 (6%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
DGGA VAM GK+C AI D L T++ K+ Q ++L GL D +
Sbjct: 36 DGGACVAMVGKDCVAIACDLRLGLQALTVSNNFPKIFQYG-DVFLGLTGLATDVTTVGDL 94
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
++ Y E+ I+P TFA + S LY R+ P F++P++AG P +G+ F+ D
Sbjct: 95 FRYKSNMYRLREERNIAPRTFANLVSSSLYERRF-GPYFVSPVVAGLDPKTGKPFICGFD 153
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
GC DF+ G+A + G+ ES W+P LS ++ A +RD SGWGA
Sbjct: 154 SIGCIDFAKDFIVSGTASEQLFGMCESLWEPDLS-----------LLNAVDRDALSGWGA 202
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY++E DKVT R + R D
Sbjct: 203 HVYIIEKDKVTKRLLKGRQD 222
>gi|346320946|gb|EGX90546.1| proteasome component PUP3 [Cordyceps militaris CM01]
gi|400595217|gb|EJP63024.1| proteasome component PUP3 [Beauveria bassiana ARSEF 2860]
Length = 191
Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 102/193 (52%), Gaps = 2/193 (1%)
Query: 12 MAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTAN 71
M GK+C AI D L T++ K+ Q ++L GL D ++ +
Sbjct: 1 MVGKDCVAIACDLRLGLQALTVSNNFPKIFQYG-DVFLGLTGLATDVSTVSDLFRYKVNM 59
Query: 72 YVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETR 131
Y E+ I+P TFA + S LY R+ P FI+P++AG P +G+ F+ D GC
Sbjct: 60 YRLREERDIAPRTFANLVSSSLYERRF-GPYFISPVVAGLDPKTGKPFICGFDSIGCIDF 118
Query: 132 KTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEP 191
DF+ G+A + + G+ E ++P L P+ LFE SQ ++ A +RD SGWGA VY++E
Sbjct: 119 AKDFIVAGTASDQLFGMCEGLYEPDLEPDALFETISQALLCAVDRDALSGWGAHVYIIEK 178
Query: 192 DKVTIRKIATRMD 204
K+T R + R D
Sbjct: 179 GKITKRLLKGRQD 191
>gi|397628563|gb|EJK68962.1| hypothetical protein THAOC_09830 [Thalassiosira oceanica]
Length = 204
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 107/200 (53%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G AI+AMAGK+C AI D+ L T+A KV +M+ L + GL D +
Sbjct: 7 NGAAIIAMAGKDCVAIASDNRLGISYQTVAMDFKKVFKMNDRLMVGLAGLATDVQTLDQL 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E+ ++P+ F + S LY ++ P F P+IAG P G+ FL T+D
Sbjct: 67 LRFRMNLYELREEREMTPEVFTNLMSNMLYEKRF-GPYFCEPVIAGLDP-KGKPFLGTMD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ G + DF G+ + G+ E+ W+P + E+LFE +Q ++ + +RD SGWG
Sbjct: 125 LIGAQAMAKDFCVAGTCDGNMYGMCETLWKPDMEKEELFETLAQALLASVDRDALSGWGG 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
V+++ + +T R++ R D
Sbjct: 185 VVHIITKEGITSRELKGRQD 204
>gi|303287020|ref|XP_003062799.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455435|gb|EEH52738.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 206
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 107/205 (52%), Gaps = 3/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVD-HLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N G AI+AM GKNC AI D + T A K++++ PHLY+ G
Sbjct: 4 MSYN-GAAIIAMCGKNCVAIASDLRFGINQQQTTAVDMKKIYEIHPHLYVGLSGASESHW 62
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
++ R Y E + P+TFA + S LY ++ P + P++AG P + E F
Sbjct: 63 SPYDRFAFRHNLYKLREGRDMRPETFANVVSAMLYEKRF-GPYYAEPVVAGLDPVTFEPF 121
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
++ +D+ G +FV G+ + + G+ ES ++P L PE+LFEV +Q ++ RD
Sbjct: 122 ITGMDLIGAAAPTDNFVVCGNNEESLFGVCESMYKPDLEPEELFEVIAQCLLAGSGRDCL 181
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
+GWG V+V+ DK R + RMD
Sbjct: 182 AGWGGVVHVISKDKRITRTLKGRMD 206
>gi|213409155|ref|XP_002175348.1| 20S proteasome component beta 3 [Schizosaccharomyces japonicus
yFS275]
gi|212003395|gb|EEB09055.1| 20S proteasome component beta 3 [Schizosaccharomyces japonicus
yFS275]
Length = 204
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 97/200 (48%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG+ +AM GK C AI D L ++ K+ M+ YL GL D E
Sbjct: 7 NGGSCIAMVGKECVAIASDLRLGAQSVSLTNNFPKIFSMTEKTYLGLTGLATDVQTLHEL 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ Y E+ I P TFA + S LY ++ +P F PI+AG + E F+ D
Sbjct: 67 FRYKINMYKLREERQIEPKTFANLVSSTLYEKRF-APYFTFPIVAGL-SKTNEPFICGFD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
GC DF G+A + + GI E ++P L PE LFE SQ ++ A +RD SGWG
Sbjct: 125 SIGCIDFAKDFAVSGTASDHLYGICEDLYEPDLEPEDLFETISQALLNAIDRDCISGWGC 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VYV+ DK R + R D
Sbjct: 185 VVYVISKDKCMKRLVKGRQD 204
>gi|12323391|gb|AAG51672.1|AC010704_16 putative 20S proteasome beta subunit PBC2; 7006-8626 [Arabidopsis
thaliana]
Length = 191
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 102/193 (52%), Gaps = 2/193 (1%)
Query: 12 MAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTAN 71
M GKNCFAI D L TIA ++ ++ HL++ GL D +++ R
Sbjct: 1 MVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDHLFIGLSGLATDVQTLYQRLVFRHKL 60
Query: 72 YVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETR 131
Y E+ + P+TFA++ S LY ++ P P+IAG D + F+ T+D G +
Sbjct: 61 YQLREERDMKPETFASLVSAILYEKRF-GPFLCQPVIAGL-GDDNKPFICTMDSIGAKEL 118
Query: 132 KTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEP 191
DFV G+A + G E+ ++P + E+LFE SQ ++ + +RD SGWG VYVV P
Sbjct: 119 AKDFVVSGTASESLYGACEAMFKPDMEAEELFETISQALLSSVDRDCLSGWGGHVYVVTP 178
Query: 192 DKVTIRKIATRMD 204
+V R + RMD
Sbjct: 179 KEVKERILKGRMD 191
>gi|21553663|gb|AAM62756.1| putative 20S proteasome beta subunit PBC2 [Arabidopsis thaliana]
Length = 204
Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 105/197 (53%), Gaps = 2/197 (1%)
Query: 8 AIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTL 67
A+VAM GKNCFAI D L TIA ++ ++ +++ GL D +++
Sbjct: 10 AVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRVFIGLSGLATDVQTLYQRLVF 69
Query: 68 RTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAG 127
R Y E+ + P+TFA++ S LY ++ P P+IAG D + F+ T+D G
Sbjct: 70 RHKLYQLREERDMKPETFASLVSAILYEKRF-GPYLCQPVIAGL-GDDDKPFICTMDSIG 127
Query: 128 CETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVY 187
+ DFV G+A + G E+ ++P + E+LFE SQ ++ + +RD SGWG VY
Sbjct: 128 AKELAKDFVVSGTASESLYGACEAMYKPDMEAEELFETISQALLSSVDRDCLSGWGGHVY 187
Query: 188 VVEPDKVTIRKIATRMD 204
+V P ++ R + RMD
Sbjct: 188 IVTPTEIKERILKGRMD 204
>gi|449673686|ref|XP_002167313.2| PREDICTED: proteasome subunit beta type-3-like, partial [Hydra
magnipapillata]
Length = 142
Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/138 (42%), Positives = 82/138 (59%), Gaps = 1/138 (0%)
Query: 67 LRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMA 126
RT Y E ISP F I S LY R+ P F+ P+IAG +P + E ++++ D+
Sbjct: 6 FRTNLYELRENRKISPKVFMTIMSNILYGRRF-GPYFVEPLIAGLHPKTNEPYIASCDLI 64
Query: 127 GCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATV 186
GC DFV G+ + + G+ ES W+P L PE LFEV SQ ++ A +RD SGWGA V
Sbjct: 65 GCPCEPEDFVVSGTCGDQLYGMCESLWEPDLEPEALFEVISQALLNAQDRDCLSGWGAVV 124
Query: 187 YVVEPDKVTIRKIATRMD 204
+++E DK+T + + RMD
Sbjct: 125 HIIEKDKITTKTLKARMD 142
>gi|148679117|gb|EDL11064.1| mCG13639 [Mus musculus]
Length = 205
Score = 126 bits (317), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 72/205 (35%), Positives = 105/205 (51%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM KNC AI D +Q +++ K+ M LY+ GL D
Sbjct: 4 MSYN-GGAVMAMKEKNCVAIAADRRFGIQAQMVTTDFQ-KIFPMGDRLYVGLAGLAIDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
A+++ Y E I P T ++ + LY K P + P+IAG P + + F
Sbjct: 62 TVAQRLKFLLNLYELKEGWQIKPYTLMSMVANLLY-EKWFGPYYTEPVIAGLDPKTFKPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + + ES W+P + PE LFE SQ ++ A +RD
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCSEPMYRMCESLWEPNMDPEHLFETISQAMLNAVDRDAV 180
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G V+V+E DK+T R + MD
Sbjct: 181 SGMGVIVHVIEKDKITTRTLKALMD 205
>gi|403214964|emb|CCK69464.1| hypothetical protein KNAG_0C03600 [Kazachstania naganishii CBS
8797]
Length = 205
Score = 126 bits (316), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 107/200 (53%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG VAMAGK+C AI D L ++ K+ H+++ GL D + ++
Sbjct: 8 NGGICVAMAGKDCVAIACDLRLGSQSLGVSNNFEKIFHYG-HVFMGMTGLATDVLTLSDV 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+T Y E I P+TF + S LY R+ P F+ P++AG +G+ F++ D
Sbjct: 67 FRYKTNLYKLREDRMIEPETFTQLVSSTLYERRF-GPYFVGPVVAGINSKTGKPFIAGFD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC DF+ G+A + + G+ ES ++P L + LFE SQ ++ A +RD SGWGA
Sbjct: 126 LIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEADDLFETISQALLNAADRDALSGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY+++ DKV + + R D
Sbjct: 186 VVYIIKKDKVIKKNLKMRQD 205
>gi|71029220|ref|XP_764253.1| proteasome subunit beta type 3 [Theileria parva strain Muguga]
gi|68351207|gb|EAN31970.1| proteasome subunit beta type 3, putative [Theileria parva]
Length = 206
Score = 126 bits (316), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 106/201 (52%), Gaps = 3/201 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
+GGA+VAM G+ C AI D L + T++ K +++ + GL D E
Sbjct: 8 NGGAVVAMMGEGCVAIACDKRLGLNQQVTVSSNFPKAFKVTESCFFAASGLATDVQTLKE 67
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
++ + Y +S T + + LY+R+ P F++ +IAG DS +++
Sbjct: 68 EIMFKVNMYKLRGDKEMSVKTLSNMVGAMLYSRRF-GPWFVDSVIAGLDNDSSP-YITCF 125
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWG 183
D+ G +DFV G+ + G+ E+ ++PG+ PEQLFE SQ ++ +RD SGWG
Sbjct: 126 DLVGAPCTPSDFVVAGTCSEQLYGVCEALFKPGMDPEQLFETVSQCLMAGIDRDCLSGWG 185
Query: 184 ATVYVVEPDKVTIRKIATRMD 204
A V+V+ PD+V R + TRMD
Sbjct: 186 AEVHVITPDRVISRSLKTRMD 206
>gi|440492147|gb|ELQ74741.1| 20S proteasome, regulatory subunit beta type PSMB3/PUP3
[Trachipleistophora hominis]
Length = 205
Score = 126 bits (316), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 111/199 (55%), Gaps = 2/199 (1%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
GG+++A+ GK+ I D L T++ ++V++MS +Y+ D K+
Sbjct: 9 GGSVLALTGKHSAIIVSDKRLGNNSITVSTQHDRVYKMSDKVYVGMTLFVPDVQMLVRKL 68
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
+ + E I PD F+++ S+ LY+ + SP F++P++AG + ++ ++D+
Sbjct: 69 RMEVNLFEIEENRRIDPDEFSSLLSYTLYSHRF-SPRFVDPVVAGI-DAHDKPYICSMDL 126
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
GC++ DF A G+A++ + G+ E+ + P ++ ++LF Q+ + A +RD SGWGA
Sbjct: 127 LGCQSTSNDFCAVGTAEDKLYGLAEALYVPDMNDDELFVTAMQIFLNAVDRDALSGWGAE 186
Query: 186 VYVVEPDKVTIRKIATRMD 204
+++ D+V R + +RMD
Sbjct: 187 AHIISRDRVVKRTVKSRMD 205
>gi|84997075|ref|XP_953259.1| proteasome beta 3 subunit [Theileria annulata strain Ankara]
gi|65304255|emb|CAI76634.1| proteasome beta 3 subunit, putative [Theileria annulata]
Length = 220
Score = 125 bits (315), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 106/201 (52%), Gaps = 3/201 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
+GGA+VAM G+ C AI D L + T++ K +++ + GL D +
Sbjct: 22 NGGALVAMMGEGCVAIACDKRLGLNQQVTVSSNFPKAFKVTESCFFAASGLATDVQTLKD 81
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
++ + Y +S T + + LY+R+ P F++ +IAG DS +++
Sbjct: 82 EIMFKVNMYKLRGDKEMSVKTLSNMVGSMLYSRRF-GPWFVDSVIAGLDTDSSP-YITCF 139
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWG 183
D+ G TDFV G+ + G+ E+ ++PG+ PEQLFE SQ ++ +RD SGWG
Sbjct: 140 DLVGAPCTPTDFVVAGTCSEQLYGVCEALFKPGMDPEQLFETVSQCLMAGIDRDCLSGWG 199
Query: 184 ATVYVVEPDKVTIRKIATRMD 204
A V+V+ PD+V R + TRMD
Sbjct: 200 AEVHVITPDRVISRSLKTRMD 220
>gi|256070137|ref|XP_002571402.1| proteasome subunit beta 3 (T01 family) [Schistosoma mansoni]
gi|350646868|emb|CCD58589.1| proteasome subunit beta 3 (T01 family) [Schistosoma mansoni]
Length = 194
Score = 125 bits (314), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 98/185 (52%), Gaps = 1/185 (0%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++G A++AM+GK+C AI D TI+ KV+ + P LY+ PGL D +
Sbjct: 6 HNGSAVIAMSGKDCAAIACDLRFGVNLQTISTDFTKVYPLGPRLYVGFPGLATDNQTVFQ 65
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
++ R Y E I P T + S LY R+ P F+ P+IAG + + +++ +
Sbjct: 66 RLQFRKNMYELRENKTIKPQTITTMLSNLLYERRF-GPYFVEPVIAGIDHTTNKPYVACM 124
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWG 183
D+ GC DFV G+ + G+ E+ W+ ++ ++LFE SQ ++ A RD SGWG
Sbjct: 125 DLIGCVCEANDFVVSGTCTEQMYGMCETLWEENMNSKELFECISQCILNALNRDAVSGWG 184
Query: 184 ATVYV 188
A VY+
Sbjct: 185 ARVYL 189
>gi|169602118|ref|XP_001794481.1| hypothetical protein SNOG_03937 [Phaeosphaeria nodorum SN15]
gi|160706087|gb|EAT89142.2| hypothetical protein SNOG_03937 [Phaeosphaeria nodorum SN15]
Length = 195
Score = 125 bits (314), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 100/197 (50%), Gaps = 6/197 (3%)
Query: 12 MAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTAN 71
M GK+C AI D L TI+ K+ Q ++L GL D ++ +
Sbjct: 1 MVGKDCVAIACDLRLGMQALTISNNFPKIFQYG-DVFLGLTGLATDVATVSDLFRYKVNM 59
Query: 72 YVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETR 131
Y E+ ISP T A + S LY ++ P F++P+IAG +G+ F+ D GC
Sbjct: 60 YRLREERNISPQTMANLVSSSLYEKRF-GPYFVSPVIAGINQTTGKPFICGFDSIGCIDF 118
Query: 132 KTDFVAGGSAQNMIMGIGESFWQPGL----SPEQLFEVCSQVVIQACERDTKSGWGATVY 187
DF+ G+A + + G E W+P L PE LFE SQ ++ A +RD SGWGA VY
Sbjct: 119 AKDFIVSGTASDQLFGTCEGLWEPDLVSSQGPEDLFETISQALLNAVDRDALSGWGAHVY 178
Query: 188 VVEPDKVTIRKIATRMD 204
++E DKVT R + R D
Sbjct: 179 IIEKDKVTKRLLKGRQD 195
>gi|19075485|ref|NP_587985.1| 20S proteasome component beta 3, Pup3 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|17380272|sp|Q9Y7T8.1|PSB3_SCHPO RecName: Full=Probable proteasome subunit beta type-3
gi|4539605|emb|CAB40016.1| 20S proteasome component beta 3, Pup3 (predicted)
[Schizosaccharomyces pombe]
Length = 204
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 98/200 (49%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG+ VAMAGKNC AI D L ++ KV M YL GL D E
Sbjct: 7 NGGSCVAMAGKNCVAIASDLRLGVQSISLTNNFPKVFAMGDKTYLGLTGLATDVQTLYEL 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ Y E+ I P TFA + S LY ++ P F P++AG D+ F+ D
Sbjct: 67 FRYKVNLYKFREERQIQPKTFANLVSSTLYEKRF-GPYFSFPVVAGVSNDNTP-FICGFD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
GC DF+ G+A + G+ ES ++P L P+ LFE SQ ++ A +RD SGWG
Sbjct: 125 SIGCIDFAEDFIVSGTATEQLYGMCESVYEPNLEPDDLFETISQALLNAQDRDCISGWGC 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VYV+ DK R + R D
Sbjct: 185 VVYVITADKCIKRLVKGRQD 204
>gi|281344355|gb|EFB19939.1| hypothetical protein PANDA_004975 [Ailuropoda melanoleuca]
Length = 190
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/190 (35%), Positives = 100/190 (52%), Gaps = 4/190 (2%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GKNC AI D +Q +++ K+ M LY+ GL D
Sbjct: 4 MSYN-GGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
A+++ R Y E I P T ++ + LY R+ P + P+IAG P + + F
Sbjct: 62 TVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYERRF-GPYYTEPVIAGLDPKTFKPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + G+ ES W+P + PE LFE SQ ++ A +RD
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAV 180
Query: 180 SGWGATVYVV 189
SG G V+++
Sbjct: 181 SGMGVIVHIM 190
>gi|156095029|ref|XP_001613550.1| 20S proteasome subunit beta-3 [Plasmodium vivax Sal-1]
gi|148802424|gb|EDL43823.1| 20S proteasome subunit beta-3, putative [Plasmodium vivax]
Length = 218
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 108/212 (50%), Gaps = 13/212 (6%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFT-IAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
+GG ++ M+G C AI D L +FT ++ K+ +M+ ++Y+ GL D E
Sbjct: 8 NGGCVLGMSGAQCVAIACDLRLGANNFTTVSTNFTKIFKMNDYVYVGLSGLATDIQTLYE 67
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGF-----YPDSG-- 116
+ R Y +++P+ D FA + S LYA + SP F+NPI+ GF D G
Sbjct: 68 LLRYRVNLYEIRQETPMDIDCFANMLSSILYANRF-SPYFVNPIVVGFRVQHTLDDEGKK 126
Query: 117 ----EVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQ 172
E +L+ D+ G + DFV G + G+ ES + + LFE SQ ++
Sbjct: 127 VCSFEPYLTAYDLIGAKCETKDFVVNGVTSEQLYGMCESLYIKDQDKDGLFETISQCLLS 186
Query: 173 ACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A +RD SGWGA VYV+ PD + +K+ RMD
Sbjct: 187 ALDRDCLSGWGAEVYVLTPDTIMKKKLKARMD 218
>gi|401825340|ref|XP_003886765.1| proteasome beta type-3 subunit [Encephalitozoon hellem ATCC 50504]
gi|392997921|gb|AFM97784.1| proteasome beta type-3 subunit [Encephalitozoon hellem ATCC 50504]
Length = 206
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 113/199 (56%), Gaps = 2/199 (1%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
GG+++AMA +N AI D L G T+++ ++H++ P LY+ P D +K+
Sbjct: 10 GGSVLAMASENAVAIMSDRRLGMGPITVSKEFTRIHKIGPRLYVGLPVFIPDTQVLLKKI 69
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
+ EQ + P+ +++ S+ LY+++ TSP +PI+AG D G+ ++S++D
Sbjct: 70 RKNYNLFRLEEQREMEPEELSSMISFLLYSKR-TSPYITSPIVAGLTSD-GKPYVSSMDS 127
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
G T DFVA G+A + ++GI E+ ++PG+ E LF C+Q + A +RD SGWGA
Sbjct: 128 IGSITSPKDFVAAGTAGDNLIGICEALYRPGMDEENLFVTCTQAFLNAVDRDALSGWGAD 187
Query: 186 VYVVEPDKVTIRKIATRMD 204
Y++ VT R I R D
Sbjct: 188 CYIISQGNVTKRSIKGRCD 206
>gi|219126883|ref|XP_002183677.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404914|gb|EEC44859.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 204
Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 106/200 (53%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G A++AMAGK+C I D L T+A NKV M P Y+ GL D
Sbjct: 7 NGAAMIAMAGKDCVGIAADRRLGVQLQTVATDFNKVFAMGPKSYVGLAGLATDVQTLKNI 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E+ +SP T + + S LY ++ P F+ PI+AG + + FLS +D
Sbjct: 67 LEFRKNLYELKEEREMSPATLSHLLSTLLYEKRF-GPYFVEPIVAGL-NEKNKPFLSAMD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ G + DFV G+ + G+ ES ++P L PE+LFE +Q ++ + +RD SGWG
Sbjct: 125 LIGAPVQADDFVVSGTCTGNLYGMCESLYRPDLEPEELFETIAQALLSSVDRDAISGWGG 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
V+++ D VT +++ R D
Sbjct: 185 VVHIITKDGVTTKELKGRQD 204
>gi|82802844|gb|ABB92466.1| rcPSMB3 [Gorilla gorilla]
Length = 204
Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 104/204 (50%), Gaps = 4/204 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVD-HLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGAI+AM GKNC AI D H +Q +++ ++ M LY+ GL D
Sbjct: 4 MSYN-GGAIMAMKGKNCVAIAADRHFGIQAQMVTTDFQ-EIFPMGGWLYIGLAGLATDIQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
A+ + R Y E I P TF ++ + LY + P + P+IAG + + F
Sbjct: 62 TVAQCLKFRLNLYELKEGQQIKPYTFTSMVANPLYEKHF-GPYYTEPVIAGLDLKTFKPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+LD+ GC DFV GS + G+ ES W+P + PE LFE SQ ++ A +
Sbjct: 121 SCSLDLIGCPMVTDDFVVNGSYAEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDWGAG 180
Query: 180 SGWGATVYVVEPDKVTIRKIATRM 203
SG G +++ E DK+T R + +M
Sbjct: 181 SGMGVIIHITEKDKITTRTLKAQM 204
>gi|56755285|gb|AAW25822.1| unknown [Schistosoma japonicum]
Length = 190
Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 97/186 (52%), Gaps = 1/186 (0%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++G A++ M+GK+C AI D TI+ KV+ + P LY+ PGL D +
Sbjct: 6 HNGSAVIGMSGKDCAAIACDLRFGVNLQTISTDFTKVYSLGPRLYVGFPGLATDNQTVFQ 65
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
++ R Y E I P T + S LY R+ P F+ P++AG + + +++ +
Sbjct: 66 RLQFRKNMYELRENRTIKPQTITTMLSNLLYERRF-GPYFVEPVVAGIDHTTSKPYVACM 124
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWG 183
D+ GC DFV G+ + G+ E+ W+ + ++LFE SQ ++ A RD SGWG
Sbjct: 125 DLIGCVCEANDFVVSGTCTEQMYGMCETLWEENMDSKELFECISQCILNALNRDAISGWG 184
Query: 184 ATVYVV 189
A VY++
Sbjct: 185 ARVYLM 190
>gi|294929626|ref|XP_002779296.1| proteasome subunit beta type 3, putative [Perkinsus marinus ATCC
50983]
gi|239888359|gb|EER11091.1| proteasome subunit beta type 3, putative [Perkinsus marinus ATCC
50983]
Length = 444
Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 104/201 (51%), Gaps = 3/201 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
+GG+++AM G+ C I D V T++ KV+ M+ + GL D ++
Sbjct: 246 NGGSVIAMKGEGCVGIACDRRYGVNQLQTVSANMQKVYPMTSRCLVGFQGLATDSQTLSQ 305
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y E + D + + + LY ++ P F P+IAG D GE F+S+
Sbjct: 306 LLKFRLKLYKLKEDREMPCDVVSHLMATMLYEKRF-GPYFCEPVIAGLKND-GEPFISSF 363
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWG 183
D+ G E+ DF+ G+A +MG+ ESFW+ G+ PE+L EV Q ++ +RD SGWG
Sbjct: 364 DLIGTESTAPDFIVSGTATEQLMGVAESFWREGMGPEELAEVLGQSLLSGIDRDCLSGWG 423
Query: 184 ATVYVVEPDKVTIRKIATRMD 204
VY++ ++ + + RMD
Sbjct: 424 GVVYILTDKELITKTLKGRMD 444
>gi|294879946|ref|XP_002768837.1| proteasome subunit beta type 3, putative [Perkinsus marinus ATCC
50983]
gi|239871775|gb|EER01555.1| proteasome subunit beta type 3, putative [Perkinsus marinus ATCC
50983]
Length = 444
Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 104/201 (51%), Gaps = 3/201 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
+GG+++AM G+ C I D V T++ KV+ M+ + GL D ++
Sbjct: 246 NGGSVIAMKGEGCVGIACDRRYGVNQLQTVSANMQKVYPMTSRCLVGFQGLATDSQTLSQ 305
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y E + D + + + LY ++ P F P+IAG D GE F+S+
Sbjct: 306 LLKFRLKLYKLKEDREMPCDVVSHLMATMLYEKRF-GPYFCEPVIAGLKND-GEPFISSF 363
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWG 183
D+ G E+ DF+ G+A +MG+ ESFW+ G+ PE+L EV Q ++ +RD SGWG
Sbjct: 364 DLIGTESTAPDFIVSGTATEQLMGVAESFWREGMGPEELAEVLGQSLLSGIDRDCLSGWG 423
Query: 184 ATVYVVEPDKVTIRKIATRMD 204
VY++ ++ + + RMD
Sbjct: 424 GVVYILTDKELITKTLKGRMD 444
>gi|294948700|ref|XP_002785851.1| proteasome subunit beta type 3, putative [Perkinsus marinus ATCC
50983]
gi|239899959|gb|EER17647.1| proteasome subunit beta type 3, putative [Perkinsus marinus ATCC
50983]
Length = 202
Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 104/201 (51%), Gaps = 3/201 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
+GG+++AM G+ C I D V T++ KV+ M+ + GL D ++
Sbjct: 4 NGGSVIAMKGEGCVGIACDRRYGVNQLQTVSANMQKVYPMTSRCLVGFQGLATDSQTLSQ 63
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y E + D + + + LY ++ P F P+IAG D GE F+S+
Sbjct: 64 LLKFRLKLYKLKEDREMPCDVVSHLMATMLYEKRF-GPYFCEPVIAGLKND-GEPFISSF 121
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWG 183
D+ G E+ DF+ G+A +MG+ ESFW+ G+ PE+L EV Q ++ +RD SGWG
Sbjct: 122 DLIGTESTAPDFIVSGTATEQLMGVAESFWREGMGPEELAEVLGQSLLSGIDRDCLSGWG 181
Query: 184 ATVYVVEPDKVTIRKIATRMD 204
VY++ ++ + + RMD
Sbjct: 182 GMVYILTDKELITKTLKGRMD 202
>gi|198472849|ref|XP_002133126.1| GA28829 [Drosophila pseudoobscura pseudoobscura]
gi|198139188|gb|EDY70528.1| GA28829 [Drosophila pseudoobscura pseudoobscura]
Length = 204
Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 103/208 (49%), Gaps = 16/208 (7%)
Query: 6 GGAIVAMAGKNCFAIGVDHLL---------VQGDFTIAEYENKVHQMSPHLYLINPGLCA 56
GG ++AM GK C AI DH L + GDF KV ++ P ++L G A
Sbjct: 4 GGCVLAMQGKECVAIATDHRLGCGSNPGQRIAGDF------KKVFKVGPRMFLGLTGFLA 57
Query: 57 DGMQFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSG 116
D +++ R Y E ++P+ F + S LY + P + ++A P +
Sbjct: 58 DVNTVWDRLQYRQNLYEIKESCEMTPEAFTTMLSNLLYEHRF-GPYHVQAVVAALDPLAL 116
Query: 117 EVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACER 176
++ ++D+ G T+K FV GS + G+ E+ W P L PEQLF SQ + A +R
Sbjct: 117 RPYICSVDLIGAPTKKDSFVFCGSCDKQLCGMCETLWTPNLDPEQLFLTMSQTLTHAFDR 176
Query: 177 DTKSGWGATVYVVEPDKVTIRKIATRMD 204
+ GWGATV+V++ DK+ R I R D
Sbjct: 177 NITCGWGATVFVLDKDKIMERVIDVRKD 204
>gi|82802842|gb|ABB92465.1| rcPSMB3 [Pan troglodytes]
Length = 204
Score = 122 bits (306), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 104/204 (50%), Gaps = 4/204 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVD-HLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGAI+AM GKNC AI D H +Q +++ ++ M LY+ GL D
Sbjct: 4 MSYN-GGAIMAMKGKNCVAIAADRHFRIQAQMVTTDFQ-EIFPMGGWLYIGLAGLATDIQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
A+ + R Y E I P TF ++ + LY + P + P+IAG + + F
Sbjct: 62 TVAQCLKFRLNLYELKEGQQIKPYTFTSMVANLLYEKHF-GPYYTEPVIAGLDLKTFKPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+LD+ GC DFV GS + G+ ES W+P + PE LFE SQ ++ A +
Sbjct: 121 RCSLDLIGCPMVTDDFVVNGSYAEQMYGMCESLWEPNMDPEHLFETISQAMLNAMDWGAG 180
Query: 180 SGWGATVYVVEPDKVTIRKIATRM 203
SG G +++ E +K+T R + +M
Sbjct: 181 SGMGVIIHITEKNKITTRTLKAQM 204
>gi|66358224|ref|XP_626290.1| possible proteasome component [Cryptosporidium parvum Iowa II]
gi|46228012|gb|EAK88932.1| possible proteasome component [Cryptosporidium parvum Iowa II]
Length = 204
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 110/202 (54%), Gaps = 5/202 (2%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
+GGAI+AM GK C A D L G TI+ +KV + S + GL D
Sbjct: 6 NGGAILAMKGKECVAFATDMRLGSNGYRTISTDFDKVIRPSSKTLMGFSGLATDIHTLTN 65
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEV-FLST 122
+ +T Y E+ I + + + LY+++ SP F+ PI+AG D+ V F++
Sbjct: 66 LIKFKTNLYHLREEREIGVKALSHMTASILYSKRF-SPYFVEPIVAGL--DNNNVPFIAG 122
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGW 182
D+ GC + ++F G+A N + GI ES+++P L P++L E+ SQ ++ +RD SGW
Sbjct: 123 YDLIGCLSVCSEFAISGTADNQLFGICESYYRPDLEPDELMEIVSQCMLSGIDRDAFSGW 182
Query: 183 GATVYVVEPDKVTIRKIATRMD 204
G VY++ P+K+ + + +RMD
Sbjct: 183 GCKVYLLTPEKLVTKTLKSRMD 204
>gi|156088863|ref|XP_001611838.1| proteasome A-type and B-type family protein [Babesia bovis]
gi|154799092|gb|EDO08270.1| proteasome A-type and B-type family protein [Babesia bovis]
Length = 205
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 104/201 (51%), Gaps = 4/201 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
+GGA+VAM G C AI D L + G TI+ K +++ Y GL D
Sbjct: 8 NGGAVVAMVGNGCVAIACDKRLGMNGQHTISSNFPKAFKVTDTAYFAACGLATDIQTMKS 67
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
++ +T Y + + T A + LY+R+ P F++ ++AG D+ ++
Sbjct: 68 EIEFKTNMYALRCEKNMGVKTLAHMVGSLLYSRRF-GPWFVSSVVAGLDKDTPHIY--CF 124
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWG 183
D+ G DFV G+ + GI ES ++P + P +LFE SQ ++ A +RD SGWG
Sbjct: 125 DLIGAPCNAKDFVVVGTCSEQLYGICESLYRPNMEPSELFETISQCLMAAIDRDCLSGWG 184
Query: 184 ATVYVVEPDKVTIRKIATRMD 204
A V+++ P+K+T+ + TRMD
Sbjct: 185 AEVHMITPEKITVSTLKTRMD 205
>gi|56752759|gb|AAW24591.1| SJCHGC02212 protein [Schistosoma japonicum]
Length = 179
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 87/165 (52%), Gaps = 1/165 (0%)
Query: 40 VHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLT 99
V+ + P LY+ PGL D +++ R Y E I P T + S LY R+
Sbjct: 16 VYSLGPRLYVGFPGLATDNQTVFQRLQFRKNMYELRENRTIKPQTITTMLSNLLYERRF- 74
Query: 100 SPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSP 159
P F+ P++AG + + +++ +D+ GC DFV G+ + G+ E+ W+ +
Sbjct: 75 GPYFVEPVVAGIDHTTSKPYVACMDLIGCVCEANDFVVSGTCTEQMYGMCETLWEENMDS 134
Query: 160 EQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
++LFE SQ ++ A RD SGWGA VY++E D VTI + RMD
Sbjct: 135 KELFECISQCILNALNRDAISGWGARVYLIEKDAVTISDLKMRMD 179
>gi|403374952|gb|EJY87444.1| Proteasome subunit beta type-3 [Oxytricha trifallax]
Length = 208
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 107/203 (52%), Gaps = 4/203 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G ++VAM+GKNC AI D L T+ +V +++ + GL D F
Sbjct: 7 NGNSMVAMSGKNCVAIATDTRLSTQLMTVDTSFQRVFKVTDQCLMGVSGLGTDVQTFNSL 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF---LS 121
M + Y E + +TF+ + + LY ++ P F++P++AG S + +
Sbjct: 67 MKFKLNMYRLKEGREMKSETFSKLVATSLYEKRF-GPYFVSPVVAGLDKISDTEYKPVIC 125
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
T D G + +F G+ ++ G+ E+F++P L PE+LF+V S ++ A +RD+ SG
Sbjct: 126 TYDSIGYRSNNGEFEVAGTGAELLYGVCETFYRPNLEPEELFQVISNSLLSALDRDSLSG 185
Query: 182 WGATVYVVEPDKVTIRKIATRMD 204
WG+ VY++ P ++ +R + TR D
Sbjct: 186 WGSKVYILTPTELIVRSLKTRQD 208
>gi|67606993|ref|XP_666789.1| proteasome component [Cryptosporidium hominis TU502]
gi|54657844|gb|EAL36555.1| proteasome component [Cryptosporidium hominis]
Length = 202
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 109/202 (53%), Gaps = 5/202 (2%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
+GGAI+AM GK C A D L G TI +KV + S + GL D
Sbjct: 4 NGGAILAMKGKECVAFATDMRLGSNGYRTIGTDFDKVIRPSSKTLMGFSGLATDIHTLTN 63
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEV-FLST 122
+ +T Y E+ I + + + LY+++ SP F+ PI+AG D+ V F++
Sbjct: 64 LIKFKTNLYHLREEREIGVKALSHMTASILYSKRF-SPYFVEPIVAGL--DNNNVPFIAG 120
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGW 182
D+ GC + ++F G+A N + GI ES+++P L P++L E+ SQ ++ +RD SGW
Sbjct: 121 YDLIGCLSVCSEFAISGTADNQLFGICESYYRPDLEPDELMEIVSQCMLSGIDRDAFSGW 180
Query: 183 GATVYVVEPDKVTIRKIATRMD 204
G VY++ P+K+ + + +RMD
Sbjct: 181 GCKVYLLTPEKLVTKTLKSRMD 202
>gi|19073955|ref|NP_584561.1| 26S PROTEASOME BETA SUBUNIT, theta chain [Encephalitozoon cuniculi
GB-M1]
gi|19068597|emb|CAD25065.1| 26S PROTEASOME BETA SUBUNIT, theta chain [Encephalitozoon cuniculi
GB-M1]
gi|449329321|gb|AGE95594.1| 26S proteasome beta subunit, theta chain [Encephalitozoon cuniculi]
Length = 205
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 103/199 (51%), Gaps = 2/199 (1%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
GG+I+AMA AI D L T+++ ++H++ P LY+ P D K+
Sbjct: 9 GGSILAMASSKGVAIMCDKRLGMSSITVSKDFTRIHRIGPRLYVGLPAFVPDTQVLLRKI 68
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
+ Q + P+ +++ S+ LY+++ T P PI+AG D G+ ++S +D
Sbjct: 69 RKNYNLFRLEHQREMEPEELSSMISFLLYSKRET-PYITAPIVAGLTSD-GKPYISGMDC 126
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
G DFVA G+A +MGI E+ ++P + E LF C Q + A +RD SGWGA
Sbjct: 127 IGSIASPGDFVAVGTADKNLMGICEALYRPDMDEENLFVTCVQAFLNAIDRDALSGWGAD 186
Query: 186 VYVVEPDKVTIRKIATRMD 204
YV+ +KVT R I R D
Sbjct: 187 CYVIGKNKVTKRSIKGRCD 205
>gi|195161717|ref|XP_002021708.1| GL26359 [Drosophila persimilis]
gi|194103508|gb|EDW25551.1| GL26359 [Drosophila persimilis]
Length = 204
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 102/208 (49%), Gaps = 16/208 (7%)
Query: 6 GGAIVAMAGKNCFAIGVDHLL---------VQGDFTIAEYENKVHQMSPHLYLINPGLCA 56
GG ++AM G C AI DH L + GDF KV ++ P ++L G A
Sbjct: 4 GGCVLAMQGNECVAIATDHRLGCGSNPGQRIAGDF------KKVFKVGPRMFLGLTGFLA 57
Query: 57 DGMQFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSG 116
D +++ R Y E ++P+ F + S LY + P + ++A P +
Sbjct: 58 DVNTVWDRLQYRQNLYEIKESCEMTPEAFTTMLSNLLYEHRF-GPYHVQAVVAALDPLAL 116
Query: 117 EVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACER 176
++ ++D+ G T+K FV GS + G+ E+ W P L PEQLF SQ + A +R
Sbjct: 117 RPYICSVDLIGAPTKKDSFVFCGSCDKQLCGMCETLWTPNLDPEQLFLTMSQTLTHAFDR 176
Query: 177 DTKSGWGATVYVVEPDKVTIRKIATRMD 204
+ GWGATV+V++ DK+ R I R D
Sbjct: 177 NITCGWGATVFVLDKDKIMERVIDVRKD 204
>gi|221052302|ref|XP_002257727.1| beta3 proteasome subunit [Plasmodium knowlesi strain H]
gi|193807558|emb|CAQ38063.1| beta3 proteasome subunit, putative [Plasmodium knowlesi strain H]
Length = 204
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 104/205 (50%), Gaps = 13/205 (6%)
Query: 12 MAGKNCFAIGVDHLLVQGDFT-IAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTA 70
M+G C AI D L +FT I+ KV +M+ ++Y+ GL D E + R
Sbjct: 1 MSGAQCVAIACDLRLGANNFTTISTNFTKVFKMNDYVYVGLSGLATDIQTLYELLRYRVN 60
Query: 71 NYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGF-----YPDSG------EVF 119
Y +++P+ D FA + S LYA + SP F+NPI+ GF + D G E +
Sbjct: 61 LYEIRQETPMDIDCFANMLSSILYANRF-SPYFVNPIVVGFRVKHTFDDEGKKIRTFEPY 119
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
L+ D+ G + DFV G + G+ ES + + LFE SQ ++ A +RD
Sbjct: 120 LTAYDLIGAKCETKDFVVNGVTSEQLYGMCESLYIKDQDKDGLFETISQCLLSALDRDCL 179
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SGWGA VYV+ PD + +K+ RMD
Sbjct: 180 SGWGAEVYVLTPDSIMKKKLKARMD 204
>gi|330318776|gb|AEC11048.1| 20S proteasome beta subunit pbc2 [Camellia sinensis]
Length = 187
Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 99/189 (52%), Gaps = 2/189 (1%)
Query: 16 NCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVAS 75
NCFAI D L TIA +++++ L + GL D +++ R Y
Sbjct: 1 NCFAIASDRRLGVQLQTIATDFQRIYKIHDKLSIGLAGLATDSQTMYQRLVFRHKLYQLR 60
Query: 76 EQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDF 135
E+ + P TFA++ S LY ++ P F P+IAG D + F+ T+D G + DF
Sbjct: 61 EERDMKPQTFASLVSALLYEKRF-GPYFCQPVIAGL-GDDDKPFICTMDSIGAKELAKDF 118
Query: 136 VAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVT 195
V G+A + G E+ ++P + E+LFE SQ ++ + +RD SGWG VYVV P +VT
Sbjct: 119 VVAGTASESLYGACEAMFKPDMEAEELFETISQALLSSVDRDCLSGWGGHVYVVTPTEVT 178
Query: 196 IRKIATRMD 204
R + RMD
Sbjct: 179 ERILKGRMD 187
>gi|323454510|gb|EGB10380.1| hypothetical protein AURANDRAFT_71184 [Aureococcus anophagefferens]
Length = 535
Score = 119 bits (298), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 101/192 (52%), Gaps = 6/192 (3%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++G AIV MAGKNC AI D T++ KV + S L++ GL D
Sbjct: 194 HNGAAIVCMAGKNCVAIASDTRFGLSQQTVSCDFQKVFKQSDRLFVGLAGLATDVQTLRN 253
Query: 64 KMTLRT----ANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
+ + A Y E+ + P+ FAA+ S LY ++ P F+ P++AG D G F
Sbjct: 254 TLKFKREPALALYELREERVMKPEAFAALLSHMLYEKRF-GPYFVEPVVAGLK-DDGSPF 311
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
L +D+ G D+V G+ + G+ ES W+P + P++LFE SQ ++ + +RD
Sbjct: 312 LCGMDLIGAPVYTDDYVVSGTCTPNLNGMCESMWRPDMGPDELFETISQCLLASVDRDAL 371
Query: 180 SGWGATVYVVEP 191
SGWGATV+V+ P
Sbjct: 372 SGWGATVHVLTP 383
>gi|389581871|dbj|GAB64592.1| 20S proteasome subunit beta-3 [Plasmodium cynomolgi strain B]
Length = 204
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 103/205 (50%), Gaps = 13/205 (6%)
Query: 12 MAGKNCFAIGVDHLLVQGDFT-IAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTA 70
M+G C AI D L +FT I+ K+ +M+ ++Y+ GL D E + R
Sbjct: 1 MSGAQCVAIACDLRLGANNFTTISTNFTKIFKMNDYVYVGLSGLATDIQTLYELLRYRVN 60
Query: 71 NYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGF-----YPDSG------EVF 119
Y ++SP+ D FA + S LYA + SP F+NPI+ GF D G E +
Sbjct: 61 LYEIRQESPMDIDCFANMLSSILYANRF-SPYFVNPIVVGFRVKHTIDDEGKKISTFEPY 119
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
L+ D+ G + DFV G + G+ ES + + LFE SQ ++ A +RD
Sbjct: 120 LTAYDLIGAKCETNDFVVNGVTGEQLYGMCESLYIKDQDKDGLFETISQCLLSALDRDCL 179
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SGWGA VYV+ PD + +K+ RMD
Sbjct: 180 SGWGAEVYVLTPDTIMKKKLKARMD 204
>gi|308799609|ref|XP_003074585.1| proteasome beta subunit (ISS) [Ostreococcus tauri]
gi|116000756|emb|CAL50436.1| proteasome beta subunit (ISS) [Ostreococcus tauri]
Length = 203
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 102/196 (52%), Gaps = 3/196 (1%)
Query: 10 VAMAGKNCFAIGVD-HLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
VAM GK+C AI D L + + T A +K+H++ L+L GL AD + A+K+ +
Sbjct: 10 VAMVGKDCVAIASDLRLGINQNQTTAVDYSKLHKIHDKLWLGLTGLIADQLTLAQKLRFK 69
Query: 69 TANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGC 128
Y E +SP FA++ S LY ++ P + P++AG D G+ +++++D+ G
Sbjct: 70 HDMYELRENRVMSPKVFASVVSTTLYEKRF-QPYYTEPVVAGLDKD-GKPYITSMDLIGA 127
Query: 129 ETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYV 188
+ DFV G + G+ ESF++ L P++LF V + RD SGWG V +
Sbjct: 128 DASADDFVVAGDNVESLFGVCESFYRKDLEPDELFNVIGNCLNAGVNRDCLSGWGGIVTL 187
Query: 189 VEPDKVTIRKIATRMD 204
+ D R + RMD
Sbjct: 188 ITKDGPITRTLKNRMD 203
>gi|412992168|emb|CCO19881.1| predicted protein [Bathycoccus prasinos]
Length = 209
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 99/195 (50%), Gaps = 3/195 (1%)
Query: 11 AMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRT 69
AM G C AI D+ L + T A K+ Q+ P L+L GL +D +
Sbjct: 17 AMCGHECVAIASDNRLGINQQQTTAIDFQKIFQIHPRLFLAMSGLASDMHTLKATFEFKH 76
Query: 70 ANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCE 129
Y E + P TFA++ S LY ++ P ++ P+IAG + + +++ +D+ G
Sbjct: 77 KLYELRENRVMEPKTFASVVSTTLYEKRF-GPYYVEPVIAGL-DKASKPYITGMDLIGAA 134
Query: 130 TRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVV 189
+FV G+ + G+ ES ++ L PE+LFEV SQ ++ RD SGWG TVYV+
Sbjct: 135 APTENFVVAGNNSESLFGVCESMYKENLEPEELFEVISQCLLSGSGRDCLSGWGGTVYVI 194
Query: 190 EPDKVTIRKIATRMD 204
D V ++ + RMD
Sbjct: 195 TKDGVEVKSVKGRMD 209
>gi|429964899|gb|ELA46897.1| hypothetical protein VCUG_01595 [Vavraia culicis 'floridensis']
Length = 205
Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 108/199 (54%), Gaps = 2/199 (1%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
GG+++A+ GK+ I D L T++ ++V++MS +Y+ D K+
Sbjct: 9 GGSVLALTGKDSAIIVSDKRLGNNSITVSMQHDRVYKMSDRVYVGMALFVPDIQMLVRKL 68
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
+ + E I PD F ++ S LY+ + SP +++PI+AG ++ ++D+
Sbjct: 69 SKEVNLFEIGENRRIEPDEFCSLLSSTLYSNRF-SPSYVDPIVAGI-DVQNRPYICSMDL 126
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
GC++ DF A G+A++ + G+ E+ + P ++ ++LF Q+ + A +RD SGWGA
Sbjct: 127 LGCQSTTNDFCAVGTAEDKLYGLAEALYTPNMNDDELFVAAMQIFLNAIDRDALSGWGAE 186
Query: 186 VYVVEPDKVTIRKIATRMD 204
+++ ++V R + +RMD
Sbjct: 187 AHIISRNRVIKRTVKSRMD 205
>gi|209878806|ref|XP_002140844.1| proteasome subunit beta type 3 [Cryptosporidium muris RN66]
gi|209556450|gb|EEA06495.1| proteasome subunit beta type 3, putative [Cryptosporidium muris
RN66]
Length = 194
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 103/196 (52%), Gaps = 3/196 (1%)
Query: 10 VAMAGKNCFAIGVDHLLVQGDF-TIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
+AM GKNC AI D + F TI+ NKV S + GL D + +
Sbjct: 1 MAMKGKNCIAIATDMRMGFNQFSTISTSFNKVINPSSKTLIGFSGLATDIHTVSSTIKFH 60
Query: 69 TANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGC 128
T Y E+ I + + + LY+++ SP + PI+AG + E +L+ D+ GC
Sbjct: 61 TNLYKLREEREIDAKALSHMTASLLYSKRF-SPYLVEPIVAGL-DKNNEPYLAGYDLIGC 118
Query: 129 ETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYV 188
++ +DF G+A + GI ESF++P + +QL E SQ ++ +RD SGWG T+Y+
Sbjct: 119 LSKCSDFAISGTADRQLFGICESFYKPDMDTDQLMETISQCMLAGLDRDALSGWGCTIYL 178
Query: 189 VEPDKVTIRKIATRMD 204
+ P ++ +K+ +RMD
Sbjct: 179 LTPTQLITKKLKSRMD 194
>gi|429329532|gb|AFZ81291.1| proteasome subunit beta type 3, putative [Babesia equi]
Length = 217
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 109/216 (50%), Gaps = 14/216 (6%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
+S +GGA+VAM G C AI D L + TI K +++ + GL D
Sbjct: 4 ISSYNGGAVVAMVGDQCVAIACDKRLGMNQQITIGTNFPKAFRVTDKSFFAASGLATDVQ 63
Query: 60 QF-----------AEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPII 108
E++ R Y AS +S +S + + + S LY+R+ SP F+ ++
Sbjct: 64 TMYVNHPCTPCCRKEEIEFRVNMYEASSESKMSINKLSNMVSTMLYSRRF-SPWFVEAVV 122
Query: 109 AGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQ 168
AG + + F+S D+ G DFV G+ + GI E+ ++P P++LFE+ SQ
Sbjct: 123 AGLDAQN-KPFISCFDLIGAPCNPDDFVVAGTCAEQLYGICEALFKPNAGPDELFEIVSQ 181
Query: 169 VVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
++ +RD SGWGA VY++ P +++R + TRMD
Sbjct: 182 CLMAGIDRDCLSGWGAQVYIITPTSISLRTLKTRMD 217
>gi|403223804|dbj|BAM41934.1| proteasome subunit beta type [Theileria orientalis strain Shintoku]
Length = 206
Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 105/201 (52%), Gaps = 3/201 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
+GGA+VAM G+ C AI D L T+ K +++ + + GL D +
Sbjct: 8 NGGAVVAMMGEGCVAIACDKRLGFNQQITVGSNFPKAFKVTDNCFFAASGLATDIQTLKD 67
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
++ + Y + ++ T + + LY+++ P F++ +IAG E +++
Sbjct: 68 EIMFKVNMYQMRGEKQMNVKTLSNMVGTMLYSKRF-GPWFVDSVIAGL-DSKNEPYITCF 125
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWG 183
D+ G TDFV G+ + G+ E+ ++PGL+ ++LFE SQ ++ +RD SGWG
Sbjct: 126 DLVGAPCTPTDFVVVGTCSEQLYGVCEALFRPGLNADELFETISQCLMAGIDRDCLSGWG 185
Query: 184 ATVYVVEPDKVTIRKIATRMD 204
A V+V+ PDKV R + TRMD
Sbjct: 186 AEVHVITPDKVVSRSLKTRMD 206
>gi|299116535|emb|CBN74723.1| proteasome beta subunit [Ectocarpus siliculosus]
Length = 220
Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 111/202 (54%), Gaps = 5/202 (2%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
+GG+ +AMAGK C A+ VD ++G E + +V +++ L GL D + +
Sbjct: 22 NGGSCLAMAGKGCVALAVDRRFGLEGQLVSTEAK-RVLKVNGQLLCGFTGLWTDVLTVMQ 80
Query: 64 KMTLRTA-NYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLST 122
++ A +A PI+P A + S LY+R+ SP F+ PI+AG P G +L
Sbjct: 81 DLSSEVALKSLAEADRPIAPAALAGLLSTLLYSRR-GSPWFVEPIVAGLDP-RGRPYLCG 138
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGW 182
D+ G DFV G++ + G E+F++PG+ E+LF V S+ ++ A ERD SG+
Sbjct: 139 QDILGAPVEVDDFVVAGTSAQSLYGTCEAFFRPGMEREELFRVASRCLLSALERDCLSGY 198
Query: 183 GATVYVVEPDKVTIRKIATRMD 204
GA V+++ + + R++ TRMD
Sbjct: 199 GAVVHLITEEGIETRELTTRMD 220
>gi|396080880|gb|AFN82500.1| 20S proteasome subunit [Encephalitozoon romaleae SJ-2008]
Length = 206
Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 105/199 (52%), Gaps = 2/199 (1%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
GG+I+AMA +N AI D L G T+++ ++H+M P LY+ D ++
Sbjct: 10 GGSILAMASENAVAIMSDKRLGMGPITVSKDFVRIHRMGPRLYVGLSTFVPDTQVLLRRI 69
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
+ EQ + P+ + + S+ LY+++ TSP PI+AG D G ++S +D
Sbjct: 70 RKNYNLFKLEEQREMEPEELSNMISFLLYSKR-TSPYITAPIVAGLSSD-GRPYISGMDC 127
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
G T DFVA G+A +MGI E+ ++P + E LF C+Q + A +RD SGWGA
Sbjct: 128 IGSITSPKDFVATGTAAKNLMGICEALYRPNMDEENLFVTCAQAFLNAVDRDALSGWGAD 187
Query: 186 VYVVEPDKVTIRKIATRMD 204
YV+ KV R I R D
Sbjct: 188 CYVISEGKVIKRSIKGRCD 206
>gi|396478743|ref|XP_003840606.1| hypothetical protein LEMA_P102580.1 [Leptosphaeria maculans JN3]
gi|312217178|emb|CBX97127.1| hypothetical protein LEMA_P102580.1 [Leptosphaeria maculans JN3]
Length = 133
Score = 116 bits (291), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 76/133 (57%), Gaps = 1/133 (0%)
Query: 72 YVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETR 131
Y E+ ISP T A + S LY ++ P FI+P+IAG SG+ F+ D GC
Sbjct: 2 YRLREERNISPQTMANLVSSSLYEKRF-GPYFISPVIAGINQTSGKPFICGFDSIGCIDF 60
Query: 132 KTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEP 191
DF+ G+A + + G E W+P L PE LFE SQ ++ A +RD SGWGA VY++E
Sbjct: 61 AKDFIVSGTASDQLFGTCEGLWEPDLGPEDLFETISQALLNAVDRDALSGWGAHVYIIEK 120
Query: 192 DKVTIRKIATRMD 204
DKVT R + R D
Sbjct: 121 DKVTKRLLKGRQD 133
>gi|82704967|ref|XP_726772.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23482323|gb|EAA18337.1| 7006-8626 [Plasmodium yoelii yoelii]
Length = 204
Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 103/205 (50%), Gaps = 13/205 (6%)
Query: 12 MAGKNCFAIGVDHLLVQGDFT-IAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTA 70
M+G C AI D L FT ++ K+ +++ H+Y+ GL D E + R
Sbjct: 1 MSGSQCVAIACDLRLGSNSFTTVSTNFTKIFKINDHIYVGLSGLATDIQSLYELLRYRVN 60
Query: 71 NYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSG-----------EVF 119
Y +++ ++ D F+ + S LY+ + SP F+NPI+ GF ++ E +
Sbjct: 61 LYQIRQETDMNIDCFSNMLSNILYSNRF-SPYFVNPIVVGFKVNTHIDENGNKINVYEPY 119
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
L+ D+ G + DFV G + + G+ ES + LFE SQ ++ A +RD
Sbjct: 120 LNAYDLIGAKCETNDFVVNGVSNEQLYGMCESMYIKDQDENGLFETVSQCLLSALDRDCL 179
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SGWGA VYV+ PDK+ +K+ RMD
Sbjct: 180 SGWGAEVYVLTPDKIIKKKLKARMD 204
>gi|355714019|gb|AES04862.1| proteasome subunit beta type 3 [Mustela putorius furo]
Length = 180
Score = 115 bits (289), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 93/178 (52%), Gaps = 4/178 (2%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GKNC AI D +Q +++ K+ M LY+ GL D
Sbjct: 4 MSYN-GGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
A+++ R Y E I P T ++ + LY ++ P + P+IAG P + + F
Sbjct: 62 TVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRF-GPYYTEPVIAGLDPKTFKPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERD 177
+ +LD+ GC DFV G+ + G+ ES W+P + PE LFE SQ ++ A +RD
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRD 178
>gi|68069127|ref|XP_676474.1| beta3 proteasome subunit [Plasmodium berghei strain ANKA]
gi|56496189|emb|CAH97578.1| beta3 proteasome subunit, putative [Plasmodium berghei]
Length = 204
Score = 115 bits (289), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 103/205 (50%), Gaps = 13/205 (6%)
Query: 12 MAGKNCFAIGVDHLLVQGDFT-IAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTA 70
M G C AI D L FT ++ K+ +++ H+Y+ GL D E + R
Sbjct: 1 MTGSQCVAIACDLRLGSNSFTTVSTNFTKIFKINDHIYVGLSGLATDIQSLYELLRYRVN 60
Query: 71 NYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSG-----------EVF 119
Y +++ ++ D F+ + S LY+ + SP F+NPI+ GF ++ E +
Sbjct: 61 LYQIRQETDMNIDCFSNMLSNILYSNRF-SPYFVNPIVVGFKVNTHIDENGNKTNVYEPY 119
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
L+ D+ G + +DFV G + + G+ ES + LFE SQ ++ A +RD
Sbjct: 120 LNAYDLIGAKCETSDFVVNGVSNEQLYGMCESMYIKDQDENGLFETVSQCLLSALDRDCL 179
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SGWGA VYV+ PDK+ +K+ RMD
Sbjct: 180 SGWGAEVYVLTPDKIIKKKLKARMD 204
>gi|118376326|ref|XP_001021345.1| Proteasome A-type and B-type family protein [Tetrahymena
thermophila]
gi|89303112|gb|EAS01100.1| Proteasome A-type and B-type family protein [Tetrahymena
thermophila SB210]
Length = 209
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 107/201 (53%), Gaps = 4/201 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG+++AM G+ C AIG D L T+A KV ++ ++ L GL D F
Sbjct: 8 NGGSMLAMKGEQCVAIGADRRLGAQFQTVATNFQKVFRIQDNILLGLTGLATDVQTFHRL 67
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFL---S 121
+ + Y E + +TF + S LY ++ P F++PI+AG D + + +
Sbjct: 68 IQYKVNLYRLRENKDMKVNTFVNLISATLYEKRW-GPYFVSPIVAGLEYDEVKGVIPITA 126
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
T D GC + + +F GG+ + ++G ESFW+ GL P++L ++ +Q + C+RD SG
Sbjct: 127 TYDSIGCTSIEGEFQVGGTGADGLIGSCESFWRKGLKPDELEDIVAQSLSAGCDRDILSG 186
Query: 182 WGATVYVVEPDKVTIRKIATR 202
WG VY + D ++++ + T+
Sbjct: 187 WGGVVYTLTKDNLSVKVLKTK 207
>gi|160331191|ref|XP_001712303.1| prsB3 [Hemiselmis andersenii]
gi|159765750|gb|ABW97978.1| prsB3 [Hemiselmis andersenii]
Length = 201
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 103/200 (51%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG+I+ M GKNCFAI D +FT + K+ ++ L+L GL D +
Sbjct: 4 NGGSIIIMGGKNCFAIASDLRFGLDNFTKGQKTPKIFKIHEKLFLGMIGLFGDISTIRQI 63
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ +T+ Y+ + I P F+ I S LY + +P + ++AG + +F+ + D
Sbjct: 64 LEYKTSIYLLKKSERIQPLGFSNILSNLLYHHRF-APFLVETVLAGL-DEKNRLFIESKD 121
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ G ++ +DF GS + GI FW+P ++ E LF+ S +I R+ SGWG
Sbjct: 122 ILGAKSATSDFATIGSCSESLNGICGVFWKPEMNREDLFKTISSCLILGLNRNCISGWGG 181
Query: 185 TVYVVEPDKVTIRKIATRMD 204
V++V D VT + I TRMD
Sbjct: 182 IVHLVSIDGVTSKLIQTRMD 201
>gi|70944654|ref|XP_742236.1| beta3 proteasome subunit [Plasmodium chabaudi chabaudi]
gi|56521097|emb|CAH75996.1| beta3 proteasome subunit, putative [Plasmodium chabaudi chabaudi]
Length = 204
Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 104/205 (50%), Gaps = 13/205 (6%)
Query: 12 MAGKNCFAIGVDHLLVQGDFT-IAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTA 70
M+G C AI D L FT ++ K+ +++ H+Y+ GL D E + R
Sbjct: 1 MSGSQCVAIACDLRLGSNSFTTVSTNFTKIFKINDHIYVGLSGLATDIQSLYELLRYRVN 60
Query: 71 NYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGF-----YPDSG------EVF 119
Y +++ ++ D F+ + S LY+ + SP F+NPI+ GF ++G E +
Sbjct: 61 LYQIRQETEMNIDCFSNMLSNILYSNRF-SPYFVNPIVVGFKVTTQVDENGNKTNVYEPY 119
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
L+ D+ G + DFV G + + G+ ES + LFE SQ ++ A +RD
Sbjct: 120 LNAYDLIGAKCETNDFVVNGVSNEQLYGMCESMYIKDQDENGLFETVSQCLLSALDRDCL 179
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SGWGA VYV+ PDK+ +K+ RMD
Sbjct: 180 SGWGAEVYVLTPDKIIKKKLKARMD 204
>gi|238585089|ref|XP_002390764.1| hypothetical protein MPER_09910 [Moniliophthora perniciosa FA553]
gi|215454558|gb|EEB91694.1| hypothetical protein MPER_09910 [Moniliophthora perniciosa FA553]
Length = 145
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 78/140 (55%), Gaps = 4/140 (2%)
Query: 68 RTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGF--YPDSG-EVFLSTLD 124
R Y E+ I P+TFA + S LY R+ P FI P++AG P G + F++ D
Sbjct: 7 RVNMYTIKEEREIEPETFAHLVSSTLYERRF-GPFFIEPVMAGMSKTPSGGLKPFIAATD 65
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC DFV G+A + + G+ E W+P L PE LFE SQ ++ A +RD SGWG
Sbjct: 66 LIGCLNFAKDFVVAGTASSKLYGVAEGLWEPDLEPEDLFETISQTMLNAVDRDAYSGWGV 125
Query: 185 TVYVVEPDKVTIRKIATRMD 204
V+V+ DKV R + RMD
Sbjct: 126 QVHVITKDKVISRTLKGRMD 145
>gi|269859513|ref|XP_002649481.1| 20S proteasome subunit [Enterocytozoon bieneusi H348]
gi|220067032|gb|EED44500.1| 20S proteasome subunit [Enterocytozoon bieneusi H348]
Length = 206
Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 102/199 (51%), Gaps = 2/199 (1%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
GG+++ M GKN I D L G+FT+ +HQ++ ++ G D + +
Sbjct: 10 GGSLLGMCGKNSVIIVGDKRLGMGNFTVNTERTSIHQINSKCFIGLSGFLPDCQKLISII 69
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
T + +E I D + S+ LY+ + T PL++ PII G + + + ++D
Sbjct: 70 TNHIKLFELNENRIIEIDEVKNLVSYVLYSYRTTGPLYLQPIIVGL-DRNDKPYAISMDC 128
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
GCET +V+ G+A+N + GI E+ + + +QLF Q I A +RD SGWGA
Sbjct: 129 LGCET-IYHYVSIGTAENNLTGICEALYIKDMDEDQLFTNAMQAFINAVDRDALSGWGAE 187
Query: 186 VYVVEPDKVTIRKIATRMD 204
+++ P KV RK+ +R D
Sbjct: 188 CFIITPSKVIQRKVKSRCD 206
>gi|303388305|ref|XP_003072387.1| 20S proteasome subunit [Encephalitozoon intestinalis ATCC 50506]
gi|303301527|gb|ADM11027.1| 20S proteasome subunit [Encephalitozoon intestinalis ATCC 50506]
Length = 206
Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 107/199 (53%), Gaps = 2/199 (1%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
GG+I+A+A AI D L T+++ ++H++ P LY+ P D +
Sbjct: 10 GGSILAIASDEAVAIMNDKRLGMSSITVSKDFTRIHKIGPRLYVGLPVFVPDTQVLLRSI 69
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
+ EQ + P+ ++ S+ LY+++ +P +PI+AG D G+ ++S +D
Sbjct: 70 RKNYNLFKLEEQREMEPEELTSMISFLLYSKR-EAPYITSPIVAGLRSD-GKPYISGMDS 127
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
G T DFVA G+++ +MGI E+ ++PG+ E LF C+Q + + +RD SGWGA
Sbjct: 128 IGSITSPRDFVAAGTSEENLMGICEALYRPGMDEENLFVTCTQAFLNSIDRDALSGWGAD 187
Query: 186 VYVVEPDKVTIRKIATRMD 204
Y++ +KVT R I R D
Sbjct: 188 CYIISRNKVTKRPIKGRCD 206
>gi|29841419|gb|AAP06451.1| similar to NM_011971 proteasome (prosome, macropain) subunit, beta
type 3 in Mus musculus [Schistosoma japonicum]
Length = 209
Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 92/182 (50%), Gaps = 1/182 (0%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++G A++ M+GK+C AI D TI+ KV+ + P LY+ PGL D +
Sbjct: 6 HNGSAVIGMSGKDCAAIACDLRFGVNLQTISTDFTKVYSLGPRLYVGFPGLATDNQTVFQ 65
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
++ R Y E I P T + S LY R+ P F+ P++AG + + +++ +
Sbjct: 66 RLQFRKNMYELRENRTIKPQTITTMLSNLLYERRF-GPYFVEPVVAGIDHTTSKPYVACM 124
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWG 183
D+ GC DFV G+ + G+ E+ W+ + ++LFE SQ ++ A RD SG G
Sbjct: 125 DLIGCVCEANDFVVSGTCTEQMYGMCETLWEENMDSKELFECISQCILNALNRDAISGLG 184
Query: 184 AT 185
+
Sbjct: 185 RS 186
>gi|430813166|emb|CCJ29467.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 179
Score = 113 bits (282), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 92/182 (50%), Gaps = 3/182 (1%)
Query: 12 MAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTAN 71
M GK+C AI D L +G + +K+ ++ +Y+ GL D + + +
Sbjct: 1 MLGKDCVAIASDLRLGKGGLMVTNDFSKIIPVTEKIYMGLSGLATDIVTLLIRYNVNL-- 58
Query: 72 YVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETR 131
Y E+ I P T A + S LY ++ + F+ PI+AG +G F+ LD GC
Sbjct: 59 YKLQEERVIEPKTLANLLSTVLYKKRFAT-YFVMPILAGLDSKTGRPFICGLDNIGCLDI 117
Query: 132 KTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEP 191
DFV G+A + GI E W+PGL P+ LFE SQ ++ A +RD SG G VYV+
Sbjct: 118 AKDFVISGTASEQLYGICECLWEPGLEPDDLFETISQALLNAQDRDALSGMGCVVYVITK 177
Query: 192 DK 193
DK
Sbjct: 178 DK 179
>gi|224014869|ref|XP_002297096.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220968215|gb|EED86564.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 204
Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 107/200 (53%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G AI+AM+GK+C I D+ + T++ K+ QM+ L++ GL +D +
Sbjct: 7 NGAAIIAMSGKDCVGIASDNRMGISYQTVSMDFKKIFQMNEKLFVGLAGLASDVQTLDQL 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E+ ++P F + S LY ++ P F P++AG ++ + +L+T+D
Sbjct: 67 LRFRMNLYELREEREMTPKVFTNLLSNMLYEKRF-GPYFAEPVVAGL-DENDKPYLATMD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ G + DFV G+ + G+ E+ ++ + E+LFE +Q ++ + +RD SGWG
Sbjct: 125 LIGATSSTEDFVVAGTCAGNLYGMCETLYKKDMEQEELFETLAQALLASVDRDALSGWGG 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
V+++ + + R++ R D
Sbjct: 185 VVHIITKEGIISRELKGRQD 204
>gi|399218578|emb|CCF75465.1| unnamed protein product [Babesia microti strain RI]
Length = 192
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 99/194 (51%), Gaps = 3/194 (1%)
Query: 12 MAGKNCFAIGVDHLLVQGDFT-IAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTA 70
M G C +IG D L FT I KV +++ + + GL D +++ +
Sbjct: 1 MCGHECVSIGSDLRLGVNRFTTIGNDFPKVFKINNKCFFGSSGLATDIQSILKELKFKIK 60
Query: 71 NYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCET 130
+ ++ I + + + LY+R+ P FI+PI+AG D F+S+ D+ G +
Sbjct: 61 IFELEQERDIGIQSLGHVVANMLYSRRF-GPWFISPIVAGL-DDKNRPFISSYDLIGAPS 118
Query: 131 RKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVE 190
DFV GS + + GI ES G++ ++LFE SQ ++ +RD SGWGA V+V+
Sbjct: 119 DSDDFVVSGSCSDQLFGICESLHHSGMNEDELFETTSQCLLAGLDRDCLSGWGAVVHVIT 178
Query: 191 PDKVTIRKIATRMD 204
P K+ + I TRMD
Sbjct: 179 PKKIITKTIQTRMD 192
>gi|330801313|ref|XP_003288673.1| proteasome subunit beta type 3 [Dictyostelium purpureum]
gi|325081295|gb|EGC34816.1| proteasome subunit beta type 3 [Dictyostelium purpureum]
Length = 205
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 101/200 (50%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA + M GKNC AI D TI+ KV++++ ++ GL D +K
Sbjct: 7 NGGACIVMTGKNCVAIASDLRFGIQQQTISNDYPKVYRVNDKCFIGISGLVTDAQTLHQK 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E+ +SP + + LY ++ P F P+I G ++S +D
Sbjct: 67 IVFRHNLYKLREERDMSPKVVTNLIANMLYEKRF-GPYFTEPLICGLEGPDNTPYISGMD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ G + + DF+ G+ + G+ E+ ++ ++ ++LFE SQ ++ + ERD SGWGA
Sbjct: 126 LIGAQVQTDDFLVVGTMTPAMYGVCETLYKKDMNEDELFETISQCMLASLERDALSGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
V ++ P K+ +K+ R D
Sbjct: 186 VVNIITPTKLITKKLIGRQD 205
>gi|328875472|gb|EGG23836.1| proteasome subunit beta type 3 [Dictyostelium fasciculatum]
Length = 201
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 100/200 (50%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA++ M GKNC AI D T++ KV++++ ++ GL D +K
Sbjct: 4 NGGAVIVMTGKNCVAIATDLRFGIQHQTVSNNHPKVYRINDKCFIGISGLVTDAQTLYQK 63
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E+ ++P + + LY ++ P F P+I G + F+S +D
Sbjct: 64 LVFRHNLYKLREERDMTPQVLSNLVGNMLYEKRF-GPYFTEPVICGL-DTQDKPFISGMD 121
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ G DF+ G+ + G+ E+ ++ ++ ++LFE SQ ++ + ERD SGWGA
Sbjct: 122 LIGASVYTEDFLLVGTMTPAMYGLCETLYKKDMNEDELFETVSQCMLSSIERDAMSGWGA 181
Query: 185 TVYVVEPDKVTIRKIATRMD 204
V ++ P K +K+ R D
Sbjct: 182 EVTIITPAKTYKKKLLARQD 201
>gi|66825821|ref|XP_646265.1| proteasome subunit beta type 3 [Dictyostelium discoideum AX4]
gi|74858609|sp|Q55D66.1|PSB3_DICDI RecName: Full=Proteasome subunit beta type-3
gi|60474299|gb|EAL72236.1| proteasome subunit beta type 3 [Dictyostelium discoideum AX4]
Length = 205
Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 100/200 (50%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA + M GKNC AI D TI+ KV++++ ++ GL D +K
Sbjct: 7 NGGACIVMVGKNCVAIASDLRFGIQQQTISNDFPKVYRINDKCFVGISGLVTDAQTLYQK 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E+ +SP + + + LY ++ P F P+I G F+S +D
Sbjct: 67 LVFRHNLYKLREERDMSPRVVSNLLTNMLYEKRF-GPYFTEPLICGLEGPDNTPFISGMD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ G DF+ G+ + G+ E+ ++ ++ + LFE SQ ++ + +RD SGWGA
Sbjct: 126 LIGASVATDDFLVVGTMTPAMYGVCETLYKKDMNEDDLFETISQCMLASLDRDALSGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
V+V+ P +V +K+ R D
Sbjct: 186 IVHVITPTQVITKKLLGRQD 205
>gi|124505797|ref|XP_001351012.1| beta3 proteasome subunit, putative [Plasmodium falciparum 3D7]
gi|23510655|emb|CAD49040.1| beta3 proteasome subunit, putative [Plasmodium falciparum 3D7]
Length = 204
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 104/207 (50%), Gaps = 17/207 (8%)
Query: 12 MAGKNCFAIGVDHLLVQGDFTIAEYE-NKVHQMSPHLYLINPGLCADGMQFAEKMTLRTA 70
M+G NC AI D L FT + +K+ +M+ ++Y+ GL D E + R
Sbjct: 1 MSGSNCVAIACDLRLGANTFTTVSTKFSKIFKMNNNVYVGLSGLATDIQTLYEILRYRVN 60
Query: 71 NYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGF----YPD-------SGEVF 119
Y + + + + FA + S LY+ + SP F+NPI+ GF Y D + E +
Sbjct: 61 LYEVRQDAEMDVECFANMLSSILYSNRF-SPYFVNPIVVGFKLKHYVDEEGEKKVNYEPY 119
Query: 120 LSTLDMAG--CETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERD 177
L+ D+ G CETR DFV G + G+ ES + LFE SQ ++ A +RD
Sbjct: 120 LTAYDLIGAKCETR--DFVVNGVTSEQLFGMCESLYVKDQDENGLFETISQCLLSALDRD 177
Query: 178 TKSGWGATVYVVEPDKVTIRKIATRMD 204
SGWGA V V+ P+K+ +K+ RMD
Sbjct: 178 CISGWGAEVLVLTPEKIIKKKLKARMD 204
>gi|119590978|gb|EAW70572.1| hCG1644450 [Homo sapiens]
Length = 205
Score = 109 bits (272), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVD-HLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGAI+AM GKN AI D H +Q +++ ++ M LY+ GL D
Sbjct: 4 MSYN-GGAIMAMKGKNRVAIAADRHFGIQAQMVTTDFQ-EIFPMGGWLYIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
+ A+ + + Y E I P TF ++ + LY + P + +P+IAG + + F
Sbjct: 62 RVAQCLKFQLNLYELKEGQQIKPYTFTSMVANFLYEKHF-GPYYTDPVIAGLDLKTFKPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+LD+ G DFV GS + G+ ES W+P + PE FE S ++ A +
Sbjct: 121 SCSLDLIGFPMVTDDFVVNGSYAEQMYGMCESLWEPNMDPEHPFETISPAMLNAVDWGAG 180
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G +++ + DK+T R + +MD
Sbjct: 181 SGMGVIIHITKKDKITTRTLKAQMD 205
>gi|14594927|emb|CAC43324.1| putative beta 3 proteasome subunit [Nicotiana tabacum]
Length = 178
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 94/173 (54%), Gaps = 2/173 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G A+VAM GKNCFAI D L TIA ++ ++ +++ GL D + ++
Sbjct: 7 NGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRIFRIHDKVFIGLSGLGTDVLTLYQR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E+ + P+TFA++ S LY ++ P F P+IAG D + F+ T+D
Sbjct: 67 LVFRHKLYQLREERDMKPETFASLVSALLYEKRF-GPYFCQPVIAGL-GDDDKPFICTMD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERD 177
G + DFV G+A + G E+ ++P + PE+LFE SQ +I + +RD
Sbjct: 125 SIGAKELAKDFVVAGTASESLYGACEAMFKPDMGPEELFETISQALIASVDRD 177
>gi|225459611|ref|XP_002285872.1| PREDICTED: proteasome subunit beta type-3-A isoform 2 [Vitis
vinifera]
Length = 174
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 95/200 (47%), Gaps = 32/200 (16%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G A++AM GKNCFAI D T+A K++++ ++L GL D ++
Sbjct: 7 NGSALIAMVGKNCFAIASDRRFGVQLQTVATDFQKIYRIHDRVFLGLSGLATDAQTLYQR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E+ + P+TFA++ S LY ++ +
Sbjct: 67 LVFRHKLYQLREERDMKPETFASLVSALLYEKRELAK----------------------- 103
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
DFV G+A + G E+ ++P + PE+LFE+ SQ ++ + +RD SGWG
Sbjct: 104 ---------DFVVAGTASESLYGACEAMFKPDMEPEELFEIISQALLSSVDRDCLSGWGG 154
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VYVV P +V R + RMD
Sbjct: 155 HVYVVTPTEVKERILKGRMD 174
>gi|387593397|gb|EIJ88421.1| hypothetical protein NEQG_01111 [Nematocida parisii ERTm3]
gi|387597054|gb|EIJ94674.1| hypothetical protein NEPG_00197 [Nematocida parisii ERTm1]
Length = 204
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 98/199 (49%), Gaps = 2/199 (1%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
GG+ +AM GK+ I D T+ ++++M+ L L G D + +
Sbjct: 8 GGSSLAMVGKDAIVITADKRFGNNASTLHSNFTRLYKMTDRLILSLTGFVPDCQILYKTL 67
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
+ +EQ I P FA + S+ LY+++ SP I+P+I GF ++ + T+D+
Sbjct: 68 RKHVNMFKLNEQREIEPKEFACLLSYILYSKRF-SPFLISPLIVGFDRENNP-HVYTMDL 125
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
GC + DF + G+A + GI + + GL E LF Q + A +R+ SGWG+
Sbjct: 126 IGCMSAHKDFASTGTASTNLTGIADVLFTEGLEEEDLFTTAVQAFLNAIDRNALSGWGSD 185
Query: 186 VYVVEPDKVTIRKIATRMD 204
V ++ P K R++ TR D
Sbjct: 186 VIILTPSKRVHREVKTRQD 204
>gi|67481017|ref|XP_655858.1| proteasome beta subunit [Entamoeba histolytica HM-1:IMSS]
gi|56473029|gb|EAL50477.1| proteasome beta subunit, putative [Entamoeba histolytica HM-1:IMSS]
gi|407034951|gb|EKE37462.1| proteasome subunit beta type 3, putative [Entamoeba nuttalli P19]
gi|449704564|gb|EMD44784.1| proteasome beta subunit, putative [Entamoeba histolytica KU27]
Length = 205
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 106/206 (51%), Gaps = 7/206 (3%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
+S GGA+V MAGK C AI D+ ++ F A + +KV Q++ + GL +D
Sbjct: 5 ISYYSGGAVVGMAGKGCVAIAADNRYGLKYQFASANF-HKVFQVNKYCLFGGAGLFSDVQ 63
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
AEK+ Y E I P+ + LY ++ P +++PIIAG D+G +
Sbjct: 64 TMAEKVKYHANLYRLREGHDIGPEQLLNSTAHMLYKKRF-QPYYMSPIIAGI-DDNGNSY 121
Query: 120 LSTLDMAGC-ETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDT 178
+ + D G E + V GS N +MG+ +SF++ G+ PE+L E Q ++ A RD
Sbjct: 122 VCSYDYIGSPEISQVGCVGTGS--NELMGMCDSFYKEGMEPEELVEAVGQCLLAAENRDA 179
Query: 179 KSGWGATVYVVEPDKVTIRKIATRMD 204
SGWG VY++ D +TI + R D
Sbjct: 180 FSGWGVEVYLLTRDNLTIYNMKPRQD 205
>gi|167393450|ref|XP_001740580.1| proteasome subunit beta type-3 [Entamoeba dispar SAW760]
gi|165895272|gb|EDR23004.1| proteasome subunit beta type-3, putative [Entamoeba dispar SAW760]
Length = 205
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 104/201 (51%), Gaps = 7/201 (3%)
Query: 6 GGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
GGA+V MAGK C AI D+ ++ F A + +KV Q++ + GL +D AEK
Sbjct: 10 GGAVVGMAGKGCVAIAADNRYGLKYQFASANF-HKVFQVNKYCLFGGAGLFSDVQTMAEK 68
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ Y E I P+ + LY ++ P +++PIIAG D+G ++ + D
Sbjct: 69 VKYHANLYRLREGHDIGPEQLLNSTAHMLYKKRF-QPYYMSPIIAGI-DDNGNSYVCSYD 126
Query: 125 MAGC-ETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWG 183
G E + V GS N +MG+ +SF++ G+ PE+L E Q ++ A RD SGWG
Sbjct: 127 YIGSPEISRVGCVGTGS--NELMGMCDSFYKEGMEPEELVEAVGQCLLAAENRDAFSGWG 184
Query: 184 ATVYVVEPDKVTIRKIATRMD 204
VY++ D +TI + R D
Sbjct: 185 VEVYLLTRDNLTIYNMKPRQD 205
>gi|384483641|gb|EIE75821.1| hypothetical protein RO3G_00525 [Rhizopus delemar RA 99-880]
Length = 172
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 92/186 (49%), Gaps = 28/186 (15%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG++VAM GK+C AI D L T++ K+ + + ++ PGL D + A++
Sbjct: 4 NGGSVVAMVGKDCVAIAADKRLGAQFMTVSTDFQKIFKATDKTFIGLPGLATDVLTLADR 63
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+T + P F+ P++AG D+ + F+ +D
Sbjct: 64 FRFKT---------------------------NIFGPYFVEPVVAGLGKDN-KPFICAMD 95
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC DFV G+A + G+ ES W+P L PE LFE SQ ++ A +RD SGWGA
Sbjct: 96 LIGCINFAKDFVVSGTAGPNLYGMCESLWEPDLEPEDLFETISQALLNAQDRDALSGWGA 155
Query: 185 TVYVVE 190
VYV++
Sbjct: 156 VVYVMQ 161
>gi|82802840|gb|ABB92464.1| rcPSMB3 [Homo sapiens]
Length = 204
Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 102/204 (50%), Gaps = 4/204 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVD-HLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGAI+AM GKN AI D H +Q +++ ++ M LY+ GL D
Sbjct: 4 MSYN-GGAIMAMKGKNRVAIAADRHFGIQAQMVTTDFQ-EIFPMGGWLYIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
+ A+ + + Y E I P TF ++ + LY + P + +P+IAG + + F
Sbjct: 62 RVAQCLKFQLNLYELKEGQQIKPYTFTSMVANFLYEKHF-GPYYTDPVIAGLDLKTFKPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+LD+ G DFV GS + G+ ES W+P + PE FE S ++ A +
Sbjct: 121 SCSLDLIGFPMVTDDFVVNGSYAEQMYGMCESLWEPNMDPEHPFETISPAMLNAVDWGAG 180
Query: 180 SGWGATVYVVEPDKVTIRKIATRM 203
SG G +++ + DK+T R + +M
Sbjct: 181 SGMGVIIHITKKDKITTRTLKAQM 204
>gi|340506918|gb|EGR32962.1| hypothetical protein IMG5_065490 [Ichthyophthirius multifiliis]
Length = 220
Score = 105 bits (263), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 103/213 (48%), Gaps = 17/213 (7%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA++ M G C AI D L T+A KV ++ ++ L GL D K
Sbjct: 8 NGGAMIGMKGNGCVAISCDRRLGAQFQTVACNFQKVFKIQDNILLGLTGLATDVQTLQIK 67
Query: 65 MTLRTAN---------------YVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIA 109
++ N Y E + +TF + S LY ++ P F+ PI+
Sbjct: 68 KNIQILNQFLKSHRQMEFKVNLYRLRENRDMKVETFINLISAALYEKRW-GPYFVQPIVI 126
Query: 110 GFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQV 169
G D +++ D GC + +F GG+A + ++G ES W+ L+PEQL +V +Q
Sbjct: 127 GL-EDGKTPMVASYDSIGCTSTNENFQVGGTAGDGLIGSCESMWRDDLTPEQLEDVVAQA 185
Query: 170 VIQACERDTKSGWGATVYVVEPDKVTIRKIATR 202
++ +RD SGWG VYV+ DK+T++ + ++
Sbjct: 186 LLAGADRDILSGWGGIVYVITKDKITVKVLKSK 218
>gi|224006550|ref|XP_002292235.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220971877|gb|EED90210.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 184
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 96/196 (48%), Gaps = 24/196 (12%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMS---PHLYLIN--------PG 53
+GG+I+AM+G+N AI +D G TIA S P + L+ G
Sbjct: 2 NGGSILAMSGRNSVAIAIDARFGLGMQTIATMNTDNDDASDGNPRIVLLPNSNTLLAWTG 61
Query: 54 LCADGMQFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYP 113
L DG+ FAE+M + +SP + S LY R+ ++P ++ P++ G
Sbjct: 62 LYGDGISFAEEM------------NKMSPRAITMLVSHLLYRRR-SAPYYVEPVVVGLEN 108
Query: 114 DSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQA 173
+L T DM G ++ T FV G A + G E+ W+P L E+L EVC + + A
Sbjct: 109 VRVPPYLVTTDMLGAQSTSTSFVCSGVASRSLHGTAEALWRPNLEGEELVEVCGRAFVSA 168
Query: 174 CERDTKSGWGATVYVV 189
ERD SG+GA VY++
Sbjct: 169 LERDCLSGYGAVVYLI 184
>gi|253744760|gb|EET00912.1| Proteasome subunit beta type 3 [Giardia intestinalis ATCC 50581]
Length = 207
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 106/203 (52%), Gaps = 6/203 (2%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLL--VQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
+G A++ + GK+C A+ D L TI + E ++ ++S L GL D +
Sbjct: 8 NGSALIGIKGKDCVALAADKRLGCSYQTLTIGK-EERIFRLSQSCLLGLAGLQTDVLTTY 66
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLST 122
++ +++ Y E I P A + S LY + P FI+PIIAGF D G+ +L
Sbjct: 67 RQIRMKSNLYHLQEDREIRPRATAKMISSFLYKHRF-GPYFISPIIAGFEAD-GKPYLGA 124
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGW 182
+D GC T+F G+A + ++G+ E+ +P +S E++ + Q++ A RD SGW
Sbjct: 125 MDTIGCLDDCTNFQIAGTASDFLLGLCEAHIKPDMSEEEILPLMEQIIRSATNRDAYSGW 184
Query: 183 GATVYVVEPD-KVTIRKIATRMD 204
GA V V+ D ++ I+TRMD
Sbjct: 185 GAHVVVLRRDGTISDTPISTRMD 207
>gi|429962770|gb|ELA42314.1| hypothetical protein VICG_00714 [Vittaforma corneae ATCC 50505]
Length = 205
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 102/199 (51%), Gaps = 2/199 (1%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
GG+I+AMAG C +I D+ L G T ++ +V +++ + L P D +K+
Sbjct: 9 GGSILAMAGDGCVSIVSDYRLGNGPITTSKSFRRVFKITDRIVLGLPFFIPDAQYLLKKI 68
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
+ + E I P A +AS LY+ + SPL+ +IAG ++ + ++ +D
Sbjct: 69 EKHVSLFKLMEGRDIEPKECANLASAILYSHR-RSPLYTTSVIAGIDSEN-KPYVCDMDS 126
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
GC+T +FVA G+A ++G+ E+ ++ + E LF Q + A +R+ SGWGA
Sbjct: 127 LGCKTEPGNFVAEGTASTNLIGLCEALYREDMDEEDLFTTSIQAFLNAVDRNALSGWGAE 186
Query: 186 VYVVEPDKVTIRKIATRMD 204
++ P K +R + R D
Sbjct: 187 CIILSPGKCVVRSVKGRCD 205
>gi|378754521|gb|EHY64552.1| hypothetical protein NERG_02362 [Nematocida sp. 1 ERTm2]
Length = 204
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 98/199 (49%), Gaps = 2/199 (1%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
GG+ +AM GK+ I D T+ ++++++ + L G D + +
Sbjct: 8 GGSSLAMVGKDAIVITADKRFGNNASTLHSNFTRLYKITDRIILSLTGFVPDCQVLYKTL 67
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
+ S+Q I P F+++ S+ LY+++ SP I+P+IAGF ++ + T+D+
Sbjct: 68 RKHVTMFKLSQQREIEPKEFSSLLSYILYSKRF-SPFLISPLIAGFDRENNP-HVYTMDL 125
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
GC + DF G+A + GI + + + PE LF Q + A +R+ SGWG+
Sbjct: 126 IGCVSGHDDFATTGTASKSLSGIADVLFTEDMEPEDLFTTTMQAFLNAIDRNALSGWGSD 185
Query: 186 VYVVEPDKVTIRKIATRMD 204
++ P K R++ TR D
Sbjct: 186 AVILTPSKRIHREVKTRQD 204
>gi|159110825|ref|XP_001705654.1| Proteasome subunit beta type 3 [Giardia lamblia ATCC 50803]
gi|157433742|gb|EDO77980.1| Proteasome subunit beta type 3 [Giardia lamblia ATCC 50803]
Length = 207
Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 104/203 (51%), Gaps = 6/203 (2%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLL--VQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
+G A++ + GK+C A+ D L TI E ++ ++S L GL D +
Sbjct: 8 NGSALIGIKGKDCVALAADKRLGCSYQTLTIGN-EERIFRLSQSCLLGLAGLQTDVLTTY 66
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLST 122
++ +++ Y E I P A + S LY + P FI+PIIAGF D G+ +L
Sbjct: 67 RQIRMKSNLYHLQEDREIRPRATAKMISSFLYKHRF-GPYFISPIIAGFEAD-GKPYLGA 124
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGW 182
+D GC T+F G+A + ++G+ E+ +P +S +++ + Q++ A RD SGW
Sbjct: 125 MDTIGCLDDCTNFQIAGTASDFLLGLCETHVKPDMSEDEILPLMEQIIRSATNRDAYSGW 184
Query: 183 GATVYVVEPDKVTIR-KIATRMD 204
GA V V+ D T I+TRMD
Sbjct: 185 GAHVVVLRRDGTTSDIPISTRMD 207
>gi|308160496|gb|EFO62983.1| Proteasome subunit beta type 3 [Giardia lamblia P15]
Length = 207
Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 106/203 (52%), Gaps = 6/203 (2%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLL--VQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
+G A++ + GK+C A+ D L TI + E ++ ++S L GL D +
Sbjct: 8 NGSALIGIKGKDCVALAADKRLGCSYQTLTIGK-EERIFRLSQSCLLGLAGLQTDVLTTY 66
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLST 122
++ +++ Y E I P A + S LY + P FI+PIIAGF D G+ +L
Sbjct: 67 RQIRMKSNLYHLQEDREIRPRATAKMISSFLYKHRF-GPYFISPIIAGFEAD-GKPYLGA 124
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGW 182
+D GC T+F G+A + ++G+ E+ +P +S +++ + Q++ A RD SGW
Sbjct: 125 MDTIGCLDDCTNFQIAGTASDFLLGLCETHVKPDMSEDEILPLMEQIIRSATNRDAYSGW 184
Query: 183 GATVYVVEPD-KVTIRKIATRMD 204
GA V ++ D ++ I+TRMD
Sbjct: 185 GAHVVILRRDGTISDTPISTRMD 207
>gi|390346295|ref|XP_003726518.1| PREDICTED: proteasome subunit beta type-3-like [Strongylocentrotus
purpuratus]
Length = 123
Score = 102 bits (254), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 64/104 (61%)
Query: 101 PLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPE 160
P FI P+IAG P + + F+ LD+ GC DFV G+ + G+ ES W P L+P+
Sbjct: 20 PYFIEPVIAGLDPKTYKPFICNLDLIGCPMFTDDFVVAGTCTEQLYGMCESVWVPDLAPD 79
Query: 161 QLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
LFE SQ ++ A +RD +GWG V+++E DKVT R++ RMD
Sbjct: 80 DLFETLSQGLLNAVDRDALAGWGVVVHIIEKDKVTTREVKARMD 123
>gi|17380218|sp|Q9N9W8.1|PSB3_GIALA RecName: Full=Proteasome subunit beta type-3
gi|9367751|emb|CAB97490.1| 20S proteasome subunit [Giardia intestinalis]
Length = 207
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 103/203 (50%), Gaps = 6/203 (2%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLL--VQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
+G A++ + G +C A+ D L TI E ++ ++S L GL D +
Sbjct: 8 NGSALIGIKGXDCVALAADKRLGCSYQTLTIGN-EERIFRLSQSCLLGLAGLQTDVLTTY 66
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLST 122
++ +++ Y E I P A + S LY + P FI+PIIAGF D G+ +L
Sbjct: 67 RQIRMKSNLYHLQEDREIRPRATAKMISSFLYKHRF-GPYFISPIIAGFEAD-GKPYLGA 124
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGW 182
+D GC T+F G+A + ++G+ E+ +P +S +++ + Q++ A RD SGW
Sbjct: 125 MDTIGCLDDCTNFQIAGTASDFLLGLCETHVKPDMSEDEILPLMEQIIRSATNRDAYSGW 184
Query: 183 GATVYVVEPDKVTIR-KIATRMD 204
GA V V+ D T I+TRMD
Sbjct: 185 GAHVVVLRRDGTTSDIPISTRMD 207
>gi|195037993|ref|XP_001990445.1| GH19348 [Drosophila grimshawi]
gi|193894641|gb|EDV93507.1| GH19348 [Drosophila grimshawi]
Length = 200
Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 95/196 (48%), Gaps = 7/196 (3%)
Query: 7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMT 66
G+I+AM GK+C AI V +G I + ++++ LYL G AD + + +
Sbjct: 10 GSIIAMHGKDCVAIAV-----KGG-NINDSNKNLYKLGARLYLGLTGRLADILMAYKHLI 63
Query: 67 LRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMA 126
LR + + + P I S LYA +L P I +I G PD+ E + +L M
Sbjct: 64 LRKNIFELEKNRELLPKELTLILSQLLYAHRLV-PFQIEAVIVGMDPDTLEPHICSLGMI 122
Query: 127 GCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATV 186
G DFV G ++G+ +S W+P L+P QL++ Q +IQ C G G +
Sbjct: 123 GYPNVTKDFVVAGHRHGPLLGLCKSLWRPSLNPSQLYDTIGQTMIQFCTSYISVGCGVDI 182
Query: 187 YVVEPDKVTIRKIATR 202
++E K+T R ++ +
Sbjct: 183 CLIEKYKITERSLSIK 198
>gi|349802615|gb|AEQ16780.1| putative proteasome beta 3 subunit [Pipa carvalhoi]
Length = 163
Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 92/205 (44%), Gaps = 46/205 (22%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GK+C AI D VQ +++ K+ M LY+ GL AD
Sbjct: 4 MSYN-GGAVMAMRGKDCVAIAADRRFGVQAQMVTTDFQ-KIFPMGDRLYIGLAGL-ADVQ 60
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
++++ R Y E P F
Sbjct: 61 TVSQRLKFRLNLY---ELKP---------------------------------------F 78
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + G+ ES W+P + PE LFE SQ ++ A +RD
Sbjct: 79 ICSLDLIGCPMVTEDFVVSGTCSEQMYGMCESLWEPDMEPEDLFETISQAMLNAVDRDAV 138
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G V+V+E DK+T R + RMD
Sbjct: 139 SGMGVVVHVIEKDKITTRTLKARMD 163
>gi|219119376|ref|XP_002180450.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407923|gb|EEC47858.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 227
Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 102/227 (44%), Gaps = 28/227 (12%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG+++AMAGK+C A+ VD G + V S L + G+ D ++
Sbjct: 2 NGGSLLAMAGKDCVALAVDRRFGSGPALVNVGPRSVLAPSSLLLVGFTGMEGDVQSLKQE 61
Query: 65 MTLRTANYV--------ASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSG 116
+ + A Q ISP + ++ S LY RK +P F+ P++ G P
Sbjct: 62 LAAQVARKYQRGMGISGTENQRFISPRSMTSLTSHVLYNRK-RAPYFVEPLVIGLEPCVS 120
Query: 117 EV-------------------FLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGL 157
E +L +LDM G + +FV G+A I G E+ +QP L
Sbjct: 121 EKKMSPISSDATVNSTTAYRPYLCSLDMIGATSLSNEFVCAGAAIKSIYGTAEAAYQPNL 180
Query: 158 SPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
S ++L E C + + A ERD SG+GA VY++ D + ++ R D
Sbjct: 181 SGDELVEACGKAFLSALERDCLSGYGAVVYLITSDGIVAYELEGRND 227
>gi|339243107|ref|XP_003377479.1| proteasome subunit beta type-3 [Trichinella spiralis]
gi|316973717|gb|EFV57276.1| proteasome subunit beta type-3 [Trichinella spiralis]
Length = 139
Score = 99.0 bits (245), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 76/140 (54%), Gaps = 1/140 (0%)
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
M RT+ Y E ++P+ F+ + S LY + SP F P++AG + E +++ +D
Sbjct: 1 MLYRTSIYNLRENRDVTPEVFSQMLSNLLYENRF-SPYFCEPVVAGIDWKTSEPYVANMD 59
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC + DFV G+ + G+ ES W+ + + FE +Q ++ ERD SGWGA
Sbjct: 60 LIGCICKPNDFVLSGTGDLQMYGMCESVWEKNMDRDAAFEATAQALLACIERDAASGWGA 119
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY + D++ ++ I R+D
Sbjct: 120 VVYTISNDEIDVKSIKARLD 139
>gi|351723049|ref|NP_001237521.1| uncharacterized protein LOC100527027 [Glycine max]
gi|255631394|gb|ACU16064.1| unknown [Glycine max]
Length = 123
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 74/125 (59%), Gaps = 2/125 (1%)
Query: 80 ISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGG 139
+ P+TFA++ S LY ++ P F P+IAG D + F+ T+D G + DFV G
Sbjct: 1 MKPETFASLVSALLYEKRF-GPYFCQPVIAGL-GDEDKPFICTMDCIGAKELAKDFVVSG 58
Query: 140 SAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKI 199
+A + G E+ ++P + PE+LFE SQ ++ + +RD SGWG VYVV P++V R +
Sbjct: 59 TASESLYGACEAMFKPDMEPEELFETISQALLSSVDRDCLSGWGGHVYVVTPNEVKERIL 118
Query: 200 ATRMD 204
RMD
Sbjct: 119 KGRMD 123
>gi|241614198|ref|XP_002406585.1| 20S proteasome, regulatory subunit beta, putative [Ixodes
scapularis]
gi|215500837|gb|EEC10331.1| 20S proteasome, regulatory subunit beta, putative [Ixodes
scapularis]
Length = 140
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 74/138 (53%), Gaps = 1/138 (0%)
Query: 43 MSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPL 102
M P LY GL D A+++ R Y E I P TF+++ S LY R+ P
Sbjct: 1 MGPKLYCGLSGLATDVQTVAQRLKFRINMYELREGRRIKPKTFSSVVSNILYERRF-GPY 59
Query: 103 FINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQL 162
F +IAG P + E ++++ D+ GC + DFV G+ + G+ E+ W+P L P++L
Sbjct: 60 FTEALIAGLDPITNEPYIASTDLIGCISEPEDFVVSGTCEEQCFGMCEALWEPDLGPDEL 119
Query: 163 FEVCSQVVIQACERDTKS 180
FEV SQ ++ A +RD S
Sbjct: 120 FEVISQALVNAFDRDASS 137
>gi|212537589|ref|XP_002148950.1| proteasome component Pup3, putative [Talaromyces marneffei ATCC
18224]
gi|210068692|gb|EEA22783.1| proteasome component Pup3, putative [Talaromyces marneffei ATCC
18224]
Length = 171
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 75/153 (49%), Gaps = 1/153 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA VAM GK+C AI D L T++ K+ +P YL GL D ++
Sbjct: 8 NGGACVAMVGKDCVAIACDLRLGMQALTVSNNFPKIFNYAPSTYLGITGLATDVTTVSDL 67
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ Y E+ ISP T A + S LY R+ P F++P+IAG +G+ F+ D
Sbjct: 68 FRYKVNMYRLREERHISPQTLANLVSSSLYERRF-GPYFVSPVIAGINHTTGKPFICGFD 126
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGL 157
GC DF+ G+A + + G E W+P L
Sbjct: 127 SIGCIDFAKDFIVSGTASDQLFGTCEGLWEPDL 159
>gi|27450761|gb|AAO14683.1|AF508264_1 beta 3 subunit of 20S proteasome [Pyrocystis lunula]
Length = 214
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 85/174 (48%), Gaps = 3/174 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
+G AIVAMAG C I D V+ T+ K Q++ ++ GL D A+
Sbjct: 8 NGSAIVAMAGDGCVGIASDTRYGVRQLQTVGCQRQKTFQLTDQTFVGIAGLATDVQTMAQ 67
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R + E+ + P T + S LY ++ P F P++AG D FL
Sbjct: 68 LLDFRIKLFSLREERTMQPQTVGNLISSILYEKRF-GPYFTEPVVAGLDKDHNP-FLCAF 125
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERD 177
D G ++ DFV G++ + G+ ESFW+P ++ ++LFE +Q ++ A +RD
Sbjct: 126 DFIGAMSKAQDFVVSGTSSEQLFGVCESFWRPKMNKDELFETLAQCLLSAVDRD 179
>gi|56755093|gb|AAW25726.1| SJCHGC01130 protein [Schistosoma japonicum]
Length = 184
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 76/154 (49%), Gaps = 1/154 (0%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++G A++ M+GK+C AI D TI+ KV+ + P LY+ PGL D +
Sbjct: 6 HNGSAVIGMSGKDCAAIACDLRFGVNLQTISTDFTKVYSLGPRLYVGFPGLATDNQTVFQ 65
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
++ R Y E I P T + S LY R+ P F+ P++AG + + +++ +
Sbjct: 66 RLQFRKNMYELRENRTIKPQTITTMLSNLLYERRF-GPYFVEPVVAGIDHTTSKPYVACM 124
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGL 157
D+ GC DFV G+ + G+ E+ W+ +
Sbjct: 125 DLIGCVCEANDFVVSGTCTEQMYGMCETLWEENM 158
>gi|195373979|ref|XP_002046043.1| GM19273 [Drosophila sechellia]
gi|194123230|gb|EDW45273.1| GM19273 [Drosophila sechellia]
Length = 82
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 54/82 (65%)
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGW 182
+D+ GC DFV + + G+ E+ W+P L P+QLFEV +Q ++ A +RD SGW
Sbjct: 1 MDLIGCPNAPDDFVVARTCAEQLYGMCETLWKPDLEPDQLFEVIAQSIVNAFDRDAMSGW 60
Query: 183 GATVYVVEPDKVTIRKIATRMD 204
GATVY++E DK+T R + TRMD
Sbjct: 61 GATVYIIEKDKITERTLKTRMD 82
>gi|330039045|ref|XP_003239771.1| 26S proteasome SU [Cryptomonas paramecium]
gi|327206696|gb|AEA38873.1| 26S proteasome SU [Cryptomonas paramecium]
Length = 201
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 94/199 (47%), Gaps = 2/199 (1%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
GG +VAM GK C A+ D FT ++ +++ + + GL D + +
Sbjct: 5 GGCVVAMGGKKCIALACDLRFGNEYFTCGCATPRIFKINKKVIIGMTGLFGDISSVKQDL 64
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
+ + + + + I S LY ++ PLF+ I+ G + E ++++D+
Sbjct: 65 EYKMSLHSFEKNLSVQFFNICNILSNLLYQKRF-CPLFLENIVCGL-DEEFEPTITSMDI 122
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
G ++F G+ + G+ E FW+PGL +LFE+ +I A R+ SGWG
Sbjct: 123 LGSSVFSSNFAIVGTCNQNLYGLCEMFWKPGLDFTELFEIIVHCLITASNRNCLSGWGCM 182
Query: 186 VYVVEPDKVTIRKIATRMD 204
V ++ P+ + + I T++D
Sbjct: 183 VKIMSPNGIVTKIIKTKVD 201
>gi|281209309|gb|EFA83482.1| p21-activated protein kinase [Polysphondylium pallidum PN500]
Length = 1404
Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 89/194 (45%), Gaps = 20/194 (10%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA++ M GK+C AI D T++ KV+++S ++ GL D +K
Sbjct: 7 NGGAVIVMTGKDCVAIATDLRFGIQHTTVSTNNPKVYRISDKCFIGISGLVTDAQTLYQK 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E+ +SP + S LY ++ P F P+I G + + F+S +D
Sbjct: 67 LVFRHNLYKLKEERDMSPQVLTNLVSNMLYEKRF-GPYFTEPVICGL-DSNNKPFISGMD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ G + DF+ G+ + G+ E+ ++ + RD SGWGA
Sbjct: 125 LIGAPVQTDDFLLVGTMTPAMYGLCETLYKKDM------------------RDAMSGWGA 166
Query: 185 TVYVVEPDKVTIRK 198
V V+ PDKV RK
Sbjct: 167 EVTVICPDKVFRRK 180
>gi|324537662|gb|ADY49511.1| Proteasome subunit beta type-3 [Ascaris suum]
Length = 130
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 65/119 (54%), Gaps = 1/119 (0%)
Query: 86 AAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMI 145
A + S LY + L P++AG P + + ++ +D GC DFVA G+ +
Sbjct: 13 ATMISNLLYQHRFGGYL-TEPLVAGLDPVTNKAYICGMDTIGCIAAPKDFVAVGTGTEYL 71
Query: 146 MGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
+G+ E FW ++ ++LFE +Q ++ A ERD SGWG +Y + +KV I+ I RMD
Sbjct: 72 LGVCEGFWHENMNADELFEATAQSMLSAMERDAASGWGVLIYTITKNKVNIKTIKARMD 130
>gi|37779068|gb|AAP20194.1| proteasome subunit [Pagrus major]
Length = 140
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 72/140 (51%), Gaps = 4/140 (2%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GKNC A+ D +Q +++ KV M LY+ GL D
Sbjct: 4 MSYN-GGAVMAMRGKNCVAVAADRRFGIQAQMVTTDFQ-KVFPMGERLYIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
++++ R Y E I P TF ++ S LY R+ P +I P+IAG P + E F
Sbjct: 62 TVSQRLKFRLNLYELKEGRQIKPKTFMSMVSNLLYERRF-GPYYIEPVIAGLDPKTFEPF 120
Query: 120 LSTLDMAGCETRKTDFVAGG 139
+ +LD+ GC DFV G
Sbjct: 121 ICSLDLIGCPMVTEDFVVSG 140
>gi|300707553|ref|XP_002995980.1| hypothetical protein NCER_101004 [Nosema ceranae BRL01]
gi|239605230|gb|EEQ82309.1| hypothetical protein NCER_101004 [Nosema ceranae BRL01]
Length = 205
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 97/199 (48%), Gaps = 2/199 (1%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
GG+I+AM GK+ +I D L G ++ + KV+ ++ L+ GL +D +K+
Sbjct: 9 GGSILAMIGKSSVSIVTDKRLGAGPISVGKNFTKVYTLNNRLFFGFTGLVSDAEILYKKI 68
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
+V + + P + + S+ LY ++L P +++ I+ G D+ + + S++D
Sbjct: 69 RKNYNLFVQDNKRDMEPSELSNLISFILYQKRL-QPYYVSTIVCGITSDN-KPYASSMDC 126
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
G +F G+A N +MG+ E+ + + E LF QV + + +RDT G G
Sbjct: 127 IGAMKETDEFATVGTASNNLMGLSEALFYADMEDEDLFTTSVQVFLNSSDRDTFGGMGFE 186
Query: 186 VYVVEPDKVTIRKIATRMD 204
+++ + R+ R D
Sbjct: 187 CFLINHEGYKKREFVGRCD 205
>gi|440290998|gb|ELP84297.1| proteasome subunit beta type-3, putative [Entamoeba invadens IP1]
Length = 265
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 91/182 (50%), Gaps = 5/182 (2%)
Query: 6 GGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
GG + M GKNC A+ D+ ++ F + + +KV Q++ H + G+ AD E+
Sbjct: 10 GGIAIGMCGKNCVALAADNRYGLRYQFASSNF-HKVFQLNEHCLVGGCGVYADVQTVFEQ 68
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ Y E PI P + L++++ +P +++PII GF D+G+ + S+ D
Sbjct: 69 IKYDANLYKLREGRPIGPSQLVNATAHLLFSKRF-NPYYMSPIIIGF-DDNGKTYCSSYD 126
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G F A G+ N MG+ +SF++ + PE+L E Q ++ RD SGWG
Sbjct: 127 YIGAPG-DYRFAAVGTGCNEAMGVCDSFYKEDMEPEELVETIGQCLLAGENRDAFSGWGV 185
Query: 185 TV 186
+
Sbjct: 186 EL 187
>gi|397575659|gb|EJK49816.1| hypothetical protein THAOC_31273 [Thalassiosira oceanica]
Length = 362
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 101/258 (39%), Gaps = 73/258 (28%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENK-------VHQMSPHLYLINPGLCAD 57
+GG+++AMAG N AI VD G T+ + +H + + + GL D
Sbjct: 87 NGGSVLAMAGSNSVAIAVDTRFGLGFQTVHSLGDSDEGNPRIIHLPNSNTLMAWTGLYGD 146
Query: 58 GMQFAEKMTLRTANYVASEQ---------SPISPDTFAAIASWELYARKLTSPLFINPII 108
G+ F+E++ + +EQ P + A + S LY R+ +P ++ P++
Sbjct: 147 GLSFSEELNMIMGRQFRNEQILSFPNTKRRITGPKSIAMLMSHLLYQRR-NAPYYVEPVV 205
Query: 109 AGF------------------YPDSGEVFLSTLDMA------------------------ 126
G DS S +D+A
Sbjct: 206 VGLESVPIDEVRIDGAAGELRIEDSSSCLQSIIDIARRGQHLLTTTEDGASSQPARVINR 265
Query: 127 --------------GCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQ 172
G ++ + FVA G A + G E+ W+P LS E+L EVC + +
Sbjct: 266 KRVQRPFLCTTDMLGAQSTSSSFVASGVASRSLYGTAEALWRPDLSGEELVEVCGRAFLS 325
Query: 173 ACERDTKSGWGATVYVVE 190
A ERD SG+G +Y++E
Sbjct: 326 ALERDCLSGYGVVIYLIE 343
>gi|431839032|gb|ELK00961.1| Proteasome subunit beta type-3 [Pteropus alecto]
Length = 140
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 59/109 (54%)
Query: 96 RKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQP 155
K P + P+I G P S + F+ +LD+ GC +FV G+ + +S W+
Sbjct: 10 EKCFGPYYTEPVICGLDPKSFKPFICSLDLIGCPMVTDNFVVRGTYTKQKYMMCKSIWEI 69
Query: 156 GLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
+ PE LFE SQV+ A ++D +SG G V++ E DK+T + + RMD
Sbjct: 70 SMDPEHLFEAISQVMPNAMDQDVESGMGVIVHISEEDKITTKILKARMD 118
>gi|198468365|ref|XP_002134014.1| GA27033 [Drosophila pseudoobscura pseudoobscura]
gi|198146380|gb|EDY72641.1| GA27033 [Drosophila pseudoobscura pseudoobscura]
Length = 198
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 93/186 (50%), Gaps = 9/186 (4%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQ-GDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
GG++VAMAG C AI DH+++ G+ +Y N + Q+ P++Y+ G D ++ +
Sbjct: 9 GGSVVAMAGNECVAIATDHIILHDGEKYDYDYGN-LFQVHPYIYVALSGCEQDIIRVRNR 67
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
M LR + ++P+ +A S L +L P I ++AG ++ E F+ ++
Sbjct: 68 MLLRQNMF-----GNVTPEIYAKNLSNYLKEPRL-KPYQIESVVAGLNTETVEPFICGVN 121
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+G DF A G + I + ++ W+P L P L V S +++ + WGA
Sbjct: 122 GSGELLNSEDFSASGKCPS-IGTMCKALWKPDLKPTDLLAVISDSIMEGSDLKGADCWGA 180
Query: 185 TVYVVE 190
T+YV+
Sbjct: 181 TIYVLH 186
>gi|195165827|ref|XP_002023740.1| GL19755 [Drosophila persimilis]
gi|194105874|gb|EDW27917.1| GL19755 [Drosophila persimilis]
Length = 198
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 92/186 (49%), Gaps = 9/186 (4%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQ-GDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
GG++VAMAG C AI DH+++ G+ +Y N + Q+ P++Y+ G D ++ +
Sbjct: 9 GGSVVAMAGNECVAIATDHIILHDGENYDFDYGN-LFQVHPYIYVALSGCEQDIIRVRNR 67
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
M LR + ++P+ +A S L +L P + ++AG D+ E F+ ++
Sbjct: 68 MLLRQNMF-----GNVTPEIYAKNLSNYLKEPRL-KPYQVESVVAGLNTDTVEPFICGVN 121
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+G DF A G +I + ++ W+P L P L V S ++ + WGA
Sbjct: 122 GSGELLNSEDFSASGKCP-LIGTMCKALWKPDLKPSGLLAVISDSIMGGSDLKGADCWGA 180
Query: 185 TVYVVE 190
T+YV+
Sbjct: 181 TIYVLH 186
>gi|341885035|gb|EGT40970.1| hypothetical protein CAEBREN_25310 [Caenorhabditis brenneri]
Length = 223
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 2/145 (1%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
GG IVAMAG C I D + + TIA + KVH+++ +Y+ G +D EK+
Sbjct: 8 GGTIVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDARTVLEKI 67
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
R Y E I P + + S Y + S F P++AG D+ + ++ +D
Sbjct: 68 MFRKNLYELRENRRIKPQVLSEMISNLAYQHRFGS-YFTEPLVAGL-DDTNKPYICCMDT 125
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGE 150
GC + DFVA G+ Q ++G+ E
Sbjct: 126 IGCVSAPRDFVAVGTGQEYLLGVCE 150
>gi|148684146|gb|EDL16093.1| mCG13231, isoform CRA_c [Mus musculus]
Length = 75
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 44/71 (61%)
Query: 134 DFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDK 193
DFV G+ + G+ ES W+P + PE LFE SQ ++ A +RD SG G V+V+E DK
Sbjct: 5 DFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAVSGMGVIVHVIEKDK 64
Query: 194 VTIRKIATRMD 204
+T R + RMD
Sbjct: 65 ITTRTLKARMD 75
>gi|149054059|gb|EDM05876.1| rCG33987, isoform CRA_c [Rattus norvegicus]
Length = 75
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 44/71 (61%)
Query: 134 DFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDK 193
DFV G+ + G+ ES W+P + PE LFE SQ ++ A +RD SG G V+++E DK
Sbjct: 5 DFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDK 64
Query: 194 VTIRKIATRMD 204
+T R + RMD
Sbjct: 65 ITTRTLKARMD 75
>gi|443896400|dbj|GAC73744.1| 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Pseudozyma
antarctica T-34]
Length = 91
Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 113 PDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQ 172
PD E F++ D+ GC DFV G+A + + G+ E W+P L PE+LFE SQ+++
Sbjct: 17 PD--EPFIAATDVIGCLNFAKDFVVSGTASDKLFGMAEGLWEPDLGPEELFETVSQILLG 74
Query: 173 ACERDTKSGWGATVYVV 189
A ERD SGWGA V ++
Sbjct: 75 ALERDALSGWGAVVRIM 91
>gi|294889359|ref|XP_002772773.1| proteasome subunit beta type, putative [Perkinsus marinus ATCC
50983]
gi|239877323|gb|EER04589.1| proteasome subunit beta type, putative [Perkinsus marinus ATCC
50983]
Length = 110
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 49/82 (59%)
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGW 182
L + G E+ DF+ G+A +MG+ ESFW+ G+ PE+L EV Q ++ +RD SGW
Sbjct: 29 LSIPGTESTAPDFIVSGTATEQLMGVAESFWREGMGPEELAEVLGQSLLSGIDRDCLSGW 88
Query: 183 GATVYVVEPDKVTIRKIATRMD 204
G VY++ ++ + + RMD
Sbjct: 89 GGMVYILTDKELITKTLKGRMD 110
>gi|240281173|gb|EER44676.1| proteasome component PUP3 [Ajellomyces capsulatus H143]
Length = 140
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 1/136 (0%)
Query: 12 MAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTAN 71
M GK+C AI D L T++ K+ +P YL GL D ++ + +
Sbjct: 1 MVGKDCVAIACDLRLGLQALTVSNSFPKIFNYAPSTYLGLTGLATDVSSVSDLLRYKVNM 60
Query: 72 YVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETR 131
Y E+ ISP T A + S LY ++ P F++P++AG +G+ F+ D GC
Sbjct: 61 YRLREERQISPQTLANLISSSLYEKRF-GPYFVSPVLAGINSTTGKPFICGFDSIGCIDF 119
Query: 132 KTDFVAGGSAQNMIMG 147
DF+ G+A + + G
Sbjct: 120 AKDFIVSGTASDQLFG 135
>gi|321473024|gb|EFX83992.1| hypothetical protein DAPPUDRAFT_230628 [Daphnia pulex]
Length = 230
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 92/212 (43%), Gaps = 16/212 (7%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG IVA+AG++ I D L+QG ++ + K+ ++S L G D + F
Sbjct: 24 DNGGTIVAVAGEDFAIIASDTRLIQGYSILSREQTKLFKLSEQTVLGVSGCWCDVLTFTR 83
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y+ P+S A + S LY ++ P +++ I+AG D S
Sbjct: 84 TLEARMKMYLHEHLKPMSTPAVAQLVSTMLYHKRFF-PYYVSNIVAGLDQDGKGTLYSYD 142
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGI-----------GESFWQPGLSPEQLFEVCSQVVIQ 172
+ CE K + AGG+A M+ + GE P ++ E+ V I
Sbjct: 143 PVGHCE--KNRYRAGGAAGAMLQPLLDNQVGLKNMKGELL--PNITKEKALMVIKDSFIS 198
Query: 173 ACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A ERDT +G G + ++ + + R D
Sbjct: 199 AAERDTSTGDGVIINIITKAGIEVMHFPLRKD 230
>gi|195016569|ref|XP_001984439.1| GH16458 [Drosophila grimshawi]
gi|193897921|gb|EDV96787.1| GH16458 [Drosophila grimshawi]
Length = 235
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 98/212 (46%), Gaps = 14/212 (6%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG+IVA+AG++ I D L G + ++K+ ++SPH L + G D +
Sbjct: 27 SNGGSIVAIAGEDFVVIAADTRLSSGYSIHSRDQSKLFKLSPHTVLGSTGCWCDTLSLTG 86
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
M +R Y + ++ D A + S +Y R+ P +++ I+AG D V S
Sbjct: 87 LMKVRMQMYEHTHMKTMTTDAVAQMLSIVMYNRRFF-PYYVSNILAGLDKDGKGVVYSYD 145
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGES---FWQPGLSPEQL--------FEVCSQVVIQ 172
+ CE + + AGG+A +++ + ++ + L+ +QL V S I
Sbjct: 146 PIGHCE--RATYRAGGTAGSLLQPVLDNQIGYKNQNLAADQLPPLTKDRAVSVASDTFIS 203
Query: 173 ACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A ERD +G + ++ D + + + R D
Sbjct: 204 AAERDIYTGDSVLINIITKDGIEQKTLQLRKD 235
>gi|195495065|ref|XP_002095108.1| GE22205 [Drosophila yakuba]
gi|194181209|gb|EDW94820.1| GE22205 [Drosophila yakuba]
Length = 235
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 98/214 (45%), Gaps = 18/214 (8%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG+IVA+AG + I D L G + ++K+ ++SP L + G AD +
Sbjct: 27 SNGGSIVAIAGDDFAVIAADTRLSSGYNIHSRTQSKLFKLSPQTVLGSTGCWADTLSLTG 86
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
M +R +Y + ++ + A + S +Y R+ P +++ I+AG + V S
Sbjct: 87 SMKVRMQSYEHTHLRTMTTEAVAQMLSIAMYNRRFF-PYYVSNILAGIDNEGKGVVYSYD 145
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPG-------------LSPEQLFEVCSQVV 170
+ CE K + AGG+A ++ + ++ Q G L+ E+ V S
Sbjct: 146 PIGHCE--KATYRAGGTAGTLLQPVLDN--QIGHKNMNLADADKIKLTKERAVSVASDTF 201
Query: 171 IQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
I A ERD +G + ++ D + +R + R D
Sbjct: 202 ISAAERDIYTGDSVLINIITKDGIEVRTLTLRQD 235
>gi|195328187|ref|XP_002030798.1| GM24382 [Drosophila sechellia]
gi|195590871|ref|XP_002085168.1| GD12455 [Drosophila simulans]
gi|194119741|gb|EDW41784.1| GM24382 [Drosophila sechellia]
gi|194197177|gb|EDX10753.1| GD12455 [Drosophila simulans]
Length = 235
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 98/212 (46%), Gaps = 14/212 (6%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG+IVA+AG + I D L G + ++K+ ++SP L + G AD +
Sbjct: 27 SNGGSIVAIAGDDFAVIAADTRLSSGYNIHSRTQSKLFKLSPQTVLGSTGCWADTLSLTG 86
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
M +R +Y + ++ + A + S +Y R+ P +++ I+AG + V S
Sbjct: 87 SMKVRMQSYEHTHLRTMTTEAVAQMLSIAMYNRRFF-PYYVSNILAGIDNEGKGVVYSYD 145
Query: 124 DMAGCETRKTDFVAGGSAQNMIM-----GIG------ESFWQPGLSPEQLFEVCSQVVIQ 172
+ CE K + AGG+A ++ IG E + L+ ++ V S I
Sbjct: 146 PIGHCE--KATYRAGGTAGTLLQPVLDNQIGHKNMNLEDADKIKLTKDRAVSVASDTFIS 203
Query: 173 ACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A ERD +G + ++ D + +R ++ R D
Sbjct: 204 AAERDIYTGDSVLINIITKDGIEVRTLSLRKD 235
>gi|195375426|ref|XP_002046502.1| GJ12457 [Drosophila virilis]
gi|194153660|gb|EDW68844.1| GJ12457 [Drosophila virilis]
Length = 235
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 95/212 (44%), Gaps = 14/212 (6%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG+IVA+AG++ I D L G + ++K+ +MSP L + G D +
Sbjct: 27 SNGGSIVAIAGEDFVVIAADTRLSSGYSIHSRDQSKLFKMSPKTVLGSTGCWCDTLSLTG 86
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ +R Y + +S D A + S +Y R+ P +++ I+AG D S
Sbjct: 87 LVKVRMQMYEHTHMKTMSTDAVAQMLSIVMYNRRFF-PYYVSNILAGLDKDGKGAVYSYD 145
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESF-----------WQPGLSPEQLFEVCSQVVIQ 172
+ CE + + AGG+A ++ + ++ P L+ E+ V S I
Sbjct: 146 PIGHCE--RATYRAGGTAGALLQPVLDNQIGYKNQNLPADQLPPLTKERAVAVASDTFIS 203
Query: 173 ACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A ERD +G + ++ D V RK+ R D
Sbjct: 204 AAERDIYTGDSVLINIITKDGVEERKLQLRKD 235
>gi|17737605|ref|NP_524115.1| proteasome 26kD subunit [Drosophila melanogaster]
gi|12643277|sp|P40304.2|PSB1_DROME RecName: Full=Proteasome subunit beta type-1; AltName:
Full=Proteasome 26 kDa subunit; Flags: Precursor
gi|7294080|gb|AAF49435.1| proteasome 26kD subunit [Drosophila melanogaster]
gi|15291705|gb|AAK93121.1| LD24159p [Drosophila melanogaster]
gi|220947536|gb|ACL86311.1| Pros26-PA [synthetic construct]
Length = 235
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 97/212 (45%), Gaps = 14/212 (6%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG+IVA+AG + I D L G + ++K+ ++SP L + G AD +
Sbjct: 27 SNGGSIVAIAGDDFAVIAADTRLSSGYNIHSRTQSKLFKLSPQTVLGSAGCWADTLSLTG 86
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ +R +Y + ++ + A + S +Y R+ P +++ I+AG + V S
Sbjct: 87 SIKVRMQSYEHTHLRTMTTEAVAQMLSIAMYNRRFF-PYYVSNILAGIDNEGKGVVYSYD 145
Query: 124 DMAGCETRKTDFVAGGSAQNMIM-----GIG------ESFWQPGLSPEQLFEVCSQVVIQ 172
+ CE K + AGG+A ++ IG E + L+ E+ V S I
Sbjct: 146 PIGHCE--KATYRAGGTAGTLLQPVLDNQIGHKNMNLEDADKIKLTKERAVSVASDTFIS 203
Query: 173 ACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A ERD +G + ++ D + +R + R D
Sbjct: 204 AAERDIYTGDSVLINIITKDGIEVRTLTLRQD 235
>gi|125977126|ref|XP_001352596.1| GA17955 [Drosophila pseudoobscura pseudoobscura]
gi|195168113|ref|XP_002024876.1| GL17976 [Drosophila persimilis]
gi|54641344|gb|EAL30094.1| GA17955 [Drosophila pseudoobscura pseudoobscura]
gi|194108306|gb|EDW30349.1| GL17976 [Drosophila persimilis]
Length = 235
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 94/214 (43%), Gaps = 18/214 (8%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG+IVA+AG++ I D L G ++K+ +S L + G D +
Sbjct: 27 SNGGSIVAIAGEDFVVIAADTRLSSGYNIHTRKQSKLFPLSNQTVLASTGCWCDTLSLTG 86
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
M LR NY + ++ D A + S +Y R+ P +++ I+AG D V S
Sbjct: 87 LMKLRMQNYEHTHLKTMTTDAVAQMLSIIMYNRRFF-PYYVSNILAGIDKDGKGVVFSYD 145
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGI-------------GESFWQPGLSPEQLFEVCSQVV 170
+ CE + + AGG+A ++ + GE P ++ E+ V S
Sbjct: 146 PIGHCE--RATYRAGGTAGALLQPVLDNQIGYKNMNLHGED--APEVTKERAVAVASDTF 201
Query: 171 IQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
I A ERD +G + ++ D + +++ R D
Sbjct: 202 ISAAERDIYTGDSVLINIITKDGIETQELQLRQD 235
>gi|358338430|dbj|GAA56814.1| heterogeneous nuclear ribonucleoprotein L [Clonorchis sinensis]
Length = 873
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 58/107 (54%), Gaps = 3/107 (2%)
Query: 83 DTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQ 142
+ F A+ E++ R L F +A Y ++++ D GC + DFV G++
Sbjct: 128 NPFCALRPDEVHPRILKETSFT---LAKHYLMICTPYIASTDNIGCISEPEDFVVAGTST 184
Query: 143 NMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVV 189
+ G+ E+ WQ ++P +LFE SQ ++ A +RD +GWGA VY++
Sbjct: 185 EQLYGMCETLWQKKMNPAELFECISQCILNAVDRDCLAGWGARVYLI 231
>gi|392868|gb|AAC46465.1| proteasome subunit [Drosophila melanogaster]
Length = 235
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 96/212 (45%), Gaps = 14/212 (6%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG+IVA+AG + I D L G + ++K+ ++SP L + G AD +
Sbjct: 27 SNGGSIVAIAGDDFAVIAADTRLSSGYNIHSRTQSKLFKLSPQTVLGSAGCWADTLSLTG 86
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ +R +Y + ++ + A + S +Y R+ P +++ I+AG + V S
Sbjct: 87 SIKVRMQSYEHTHLRTMTTEAVAQMLSIAMYNRRFF-PYYVSNILAGIDNEGKGVVYSYD 145
Query: 124 DMAGCETRKTDFVAGGSAQNMIM-----GIG------ESFWQPGLSPEQLFEVCSQVVIQ 172
+ CE K + AGG+A ++ IG E + L+ E V S I
Sbjct: 146 PIGHCE--KATYRAGGTAGTLLQPVLDNQIGHKNMNLEDADKIKLTKEWAVSVASDTFIS 203
Query: 173 ACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A ERD +G + ++ D + +R + R D
Sbjct: 204 AAERDIYTGDSVLINIITKDGIEVRTLTLRQD 235
>gi|195135135|ref|XP_002011990.1| GI16713 [Drosophila mojavensis]
gi|193918254|gb|EDW17121.1| GI16713 [Drosophila mojavensis]
Length = 235
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 95/212 (44%), Gaps = 14/212 (6%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG+IVA+AG + I D L G + ++K+ +MSP L + G D +
Sbjct: 27 SNGGSIVAIAGDDFVVIAADTRLSSGYSIHSRDQSKLFEMSPKTVLGSTGCWCDTLSLTG 86
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ +R Y + ++ D A + S +Y R+ P +++ I+AG D S
Sbjct: 87 LVKVRMQMYEHTHLKTMTTDAVAQMLSIVMYNRRFF-PYYVSNILAGLDKDGKGAVYSYD 145
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGE----------SFWQ-PGLSPEQLFEVCSQVVIQ 172
+ CE + + AGGSA ++ + + S Q P L+ E+ V S I
Sbjct: 146 PIGHCE--RATYRAGGSAGALLQPVLDNQIGYKNQNLSLDQLPPLTKERAVAVASDTFIS 203
Query: 173 ACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A ERD +G + ++ D + R++ R D
Sbjct: 204 AAERDIYTGDSVLINIITADGIEKRELQLRKD 235
>gi|194750661|ref|XP_001957648.1| GF10515 [Drosophila ananassae]
gi|190624930|gb|EDV40454.1| GF10515 [Drosophila ananassae]
Length = 235
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 96/212 (45%), Gaps = 14/212 (6%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG+IVA+AG + I D L G + ++K+ ++S L + G AD +
Sbjct: 27 SNGGSIVAIAGDDFVVIAADTRLSSGYNIHSRDQSKLFKLSDQTVLGSTGCWADTLSLTG 86
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ +R Y + ++ D A + S +Y R+ P +++ I+AG D V S
Sbjct: 87 LLKVRMQGYEHTHLRTMATDAVAQMLSITMYNRRFF-PYYVSNILAGIDKDGKGVVYSYD 145
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGE-----------SFWQPGLSPEQLFEVCSQVVIQ 172
+ CE + + AGG+A ++ + + S P L+ E+ + S I
Sbjct: 146 PIGHCE--RAFYRAGGTAGTLLQPVLDNQIGHKNINLSSSELPKLTIERAVAIASDTFIS 203
Query: 173 ACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A ERD +G + ++ D + +K+ R+D
Sbjct: 204 AAERDIYTGDSVLINIITKDGIEEKKLQLRLD 235
>gi|156937771|ref|YP_001435567.1| proteasome endopeptidase complex protein [Ignicoccus hospitalis
KIN4/I]
gi|302595716|sp|A8AB58.1|PSB2_IGNH4 RecName: Full=Proteasome subunit beta 2; AltName: Full=20S
proteasome beta subunit 2; AltName: Full=Proteasome core
protein PsmB 2; Flags: Precursor
gi|156566755|gb|ABU82160.1| Proteasome endopeptidase complex [Ignicoccus hospitalis KIN4/I]
Length = 212
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 88/192 (45%), Gaps = 5/192 (2%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G V + + + D G+F + + K+ ++S ++ + GL AD A+ +
Sbjct: 13 GTTTVGIRSEKAVVLAADKRATAGNFIVHKRVEKIVKISDYMAMTTAGLVADAQVLADVL 72
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
+ NY + +S A S L++ + P + ++ GF D+ L +LD
Sbjct: 73 RMEVKNYELFHKKRMSVKAAATFLSNVLHSARF-YPYIVQLLVGGF--DTAP-RLYSLDW 128
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
G + +F+ GS M +G+ E+ + P + E+L + + V A RDT SG G
Sbjct: 129 FGT-VAEEEFLVTGSGSPMAVGVIEAEYNPNMDLEELVNLAVRAVFAATRRDTASGEGID 187
Query: 186 VYVVEPDKVTIR 197
V V++ + +T+R
Sbjct: 188 VAVIDRNGITMR 199
>gi|145350076|ref|XP_001419449.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579680|gb|ABO97742.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 227
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 92/215 (42%), Gaps = 18/215 (8%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
N+GG ++A+AG+N D + G + KV QMSP + + G AD +
Sbjct: 17 NNGGTVLAVAGENYVICASDTRMSTGYSILTRNYEKVDQMSPKTLMASAGFMADAQTLKK 76
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPD-SGEVFLST 122
+ R Y + PI +FA + S LY R+ P + I+AG + G VF T
Sbjct: 77 TLKARCKQYEFQNKKPIGCVSFAQMLSNTLYYRRFF-PYYAFNIVAGLDAEGKGAVF--T 133
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGESFWQ-------PG------LSPEQLFEVCSQV 169
D G R T++ GS Q +IM + ++ + P LS E+
Sbjct: 134 YDAVGSYER-TNYSCQGSGQALIMPVLDNQLKTVSPLVLPAVSSATPLSEAAAIELIKDC 192
Query: 170 VIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A ERD +G ++++ D V ++ R+D
Sbjct: 193 FATAAERDIYTGDRVELWIMNADGVRKEEMPLRLD 227
>gi|195441689|ref|XP_002068635.1| GK20318 [Drosophila willistoni]
gi|194164720|gb|EDW79621.1| GK20318 [Drosophila willistoni]
Length = 233
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 96/212 (45%), Gaps = 14/212 (6%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG+IVA+AG++ I D L G +NK+ ++S + L + G +D +
Sbjct: 25 SNGGSIVAIAGEDFAVIAADTRLSSGYNIHTRTQNKLFKLSENSVLGSTGCWSDTLSLTG 84
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ +R Y + +S D A + S +Y R+ P +++ I+AG D V S
Sbjct: 85 LLKVRMQMYEHTHLKVMSTDALAQMLSITMYNRRFF-PYYVSNILAGVDKDGKGVVYSYD 143
Query: 124 DMAGCETRKTDFVAGGSA--------QNMIMGIGESFWQ---PGLSPEQLFEVCSQVVIQ 172
+ CE + + AGG+A N I ++ Q P LS ++ V I
Sbjct: 144 PIGHCE--RATYRAGGTAGPLLQPVLDNQIGYKNQNLSQDELPKLSIDRAVAVAFDTFIS 201
Query: 173 ACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A ERD +G + ++ D++ +++ R D
Sbjct: 202 AAERDIYTGDSVIINIITKDEIKSQELPLRKD 233
>gi|444732722|gb|ELW72997.1| Glutamate decarboxylase 2 [Tupaia chinensis]
Length = 312
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%)
Query: 103 FINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQL 162
+ +IAG P + + F+ LD+ GC DFV G+ + G+ ES W+P + PE L
Sbjct: 55 YTETVIAGLDPKTFKPFICCLDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPIMDPEYL 114
Query: 163 FEVCSQVVIQACERDTKSGWGATVY 187
FE SQ ++ A + D SG G V+
Sbjct: 115 FETISQAMLNAVDWDAVSGMGVIVH 139
>gi|157119738|ref|XP_001659482.1| proteasome subunit beta type [Aedes aegypti]
gi|108875198|gb|EAT39423.1| AAEL008770-PA [Aedes aegypti]
Length = 231
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 93/212 (43%), Gaps = 16/212 (7%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG++VA+AG + IG D L G +NK+ +MS L + G D +
Sbjct: 25 SNGGSVVAIAGDDFAVIGADTRLSSGYSIHTRTQNKLFRMSDRTVLASTGCWCDTLALTS 84
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ +R Y Q ++ A + S +Y R+ P +++ ++AG D V S
Sbjct: 85 LVKVRMQMYKDQHQKNMTTPAVAQMLSILMYNRRFF-PYYVSNVLAGLDADGKGVIYSYD 143
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGL--------SPEQL---FEVCSQVVIQ 172
+ CE KT + AGGSA ++ + ++ Q GL +P QL + I
Sbjct: 144 PIGHCE--KTTYRAGGSAGPLLQPVLDN--QIGLKNMVNVAPTPVQLDKAISIIKDTFIS 199
Query: 173 ACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A ERD +G + ++ D + + R D
Sbjct: 200 ATERDIYTGDSVIINIITKDGIKEEIVQLRKD 231
>gi|194872539|ref|XP_001973034.1| GG15866 [Drosophila erecta]
gi|190654817|gb|EDV52060.1| GG15866 [Drosophila erecta]
Length = 235
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 97/214 (45%), Gaps = 18/214 (8%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG+IVA+AG + I D L G + ++K+ ++S L + G AD +
Sbjct: 27 SNGGSIVAIAGDDFAVIAADTRLSSGYNIHSRTQSKLFKLSHQTVLGSTGCWADTLSLTG 86
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
M +R +Y + ++ + A + S +Y R+ P +++ I+AG + V S
Sbjct: 87 SMKVRMQSYEHTHLRTMTTEAVAQMLSIAMYNRRFF-PYYVSNILAGIDNEGKGVVYSYD 145
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPG-------------LSPEQLFEVCSQVV 170
+ CE K + AGG+A ++ + ++ Q G L+ E+ V S
Sbjct: 146 PIGHCE--KATYRAGGTAGTLLQPVLDN--QIGHKNMNLADADKIKLTKERAVSVASDTF 201
Query: 171 IQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
I A ERD +G + ++ D + ++ + R D
Sbjct: 202 ISAAERDIYTGDSVLINIITNDGIEVQTLPLRQD 235
>gi|198463833|ref|XP_002135596.1| GA28639 [Drosophila pseudoobscura pseudoobscura]
gi|198151431|gb|EDY74223.1| GA28639 [Drosophila pseudoobscura pseudoobscura]
Length = 216
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 92/206 (44%), Gaps = 8/206 (3%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
N+GG ++A+AGK+ IG D L G ++ + K+ +S + + G D +
Sbjct: 12 NNGGTVLAIAGKDFVVIGGDTRLSSGCAILSRTQTKLCPLSKQMVVAATGCGCDAVSLTN 71
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPD-SGEVFLST 122
+ ++ Y +S ++ A + S Y R+ P ++PI+ G D G VF +
Sbjct: 72 LLKVKQQGYENQHHKVMSIESMAQMLSVVQYQRRHL-PYNVSPILGGIDQDGQGAVF--S 128
Query: 123 LDMAGCETRKTDFVAG---GSAQNMIMG-IGESFWQPGLSPEQLFEVCSQVVIQACERDT 178
D G R++ V G G Q ++ IGE+ QP L+ E+ + I A + D
Sbjct: 129 YDCIGHFVRESSRVEGTAVGILQPVLDNQIGETSEQPALTKERALAIAKDAFITAAQSDM 188
Query: 179 KSGWGATVYVVEPDKVTIRKIATRMD 204
+G + V+ D + + K+ D
Sbjct: 189 FTGDSVIINVITKDSIKVEKMQLGKD 214
>gi|255513744|gb|EET90009.1| Proteasome endopeptidase complex [Candidatus Micrarchaeum
acidiphilum ARMAN-2]
Length = 210
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 85/184 (46%), Gaps = 3/184 (1%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G V + + I D F + KV ++ +L + GL D + +
Sbjct: 12 GTTTVGLVCTDGVVIAADSRATMDTFIASTEARKVWKIDENLGMTIAGLVGDAQELIRIL 71
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
++ Y +E+ +SP + A + S L K+ P ++ I+ G + G+ ++ LD
Sbjct: 72 KIQNEIYKMNERKQMSPRSAATLLSIILQENKMM-PFYVQLIVGGV--EDGKGYVYNLDA 128
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
AG T+++ F A GS +G E ++PGL+ + ++ ++ ++ A +RD+ +G T
Sbjct: 129 AGGYTQESRFTATGSGSLTALGYLEDSYKPGLTTKDAIKIAAKALLIAMQRDSATGNNMT 188
Query: 186 VYVV 189
+ +
Sbjct: 189 IAAI 192
>gi|332019508|gb|EGI59987.1| Proteasome subunit beta type-1 [Acromyrmex echinatior]
Length = 237
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 94/211 (44%), Gaps = 14/211 (6%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTI-AEYENKVHQMSPHLYLINPGLCADGMQFA 62
++GG++VA+AG + I D L G FTI ++K+ +S L G D
Sbjct: 31 DNGGSVVALAGDDFCVIAADTRLSTG-FTIHTRNQDKLFPLSDTTILGCSGCWCDTTTLT 89
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLST 122
++ R Y Q +S A + S LY ++ P +++ I+AG + S
Sbjct: 90 RLLSARMQMYKHEHQKEMSTPATAQMLSIMLYHKRFF-PYYVSNILAGLDENGKGCIYSY 148
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGESFW----QPGLSP-----EQLFEVCSQVVIQA 173
+ CE KT + AGGSA ++ + ++ Q G++P E+ + V A
Sbjct: 149 DPIGHCE--KTTYRAGGSAGALLQPLLDNQIGYKNQEGVTPAPLTQEKAIAILKDVFTSA 206
Query: 174 CERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G G T+ ++ D + I A R D
Sbjct: 207 AERDIYTGDGITIKIITKDGIEISSFALRKD 237
>gi|195439248|ref|XP_002067543.1| GK16137 [Drosophila willistoni]
gi|194163628|gb|EDW78529.1| GK16137 [Drosophila willistoni]
Length = 229
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 100/205 (48%), Gaps = 9/205 (4%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLV-QGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
+GG+IVA+AG++ I D +V + D ++ ++K+ Q++P + + G AD +
Sbjct: 29 NGGSIVAIAGEDFVTIAGDTRMVNEDDAIVSRSQSKLFQLTPMTAIGSVGCFADTLAVVN 88
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPD-SGEVFLST 122
+ Y + IS D A + S +Y+ + P F++ I+AG + G VF +
Sbjct: 89 VIKQNIHMYQLTHLKRISTDALAQMLSISMYSHRFF-PYFVSNIVAGIDRNGKGAVF--S 145
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIG---ESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
D G RK AG + MI + ++ +P L+ E E+ +V+I A +D
Sbjct: 146 YDPIGHHERKAYDAAGTGFELMIPAMDYFIKNLKEP-LTIEIAAEITRKVMIVADNKDVY 204
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
+G A +Y++ + V +K+ R D
Sbjct: 205 TGDSAIMYIITKNGVEAKKMPLRKD 229
>gi|322796740|gb|EFZ19173.1| hypothetical protein SINV_12036 [Solenopsis invicta]
Length = 237
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 91/210 (43%), Gaps = 12/210 (5%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG++VA+AG + I D L G ++K+ +S L G D +
Sbjct: 31 DNGGSVVALAGDDFCVIAADTRLSTGFSIYTREQDKLFSLSNTTILGCSGCWCDTLTLTR 90
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
++ R Y Q +S A + S LY ++ P +++ I+AG + S
Sbjct: 91 LLSARMQMYKHEHQKEMSTPAAAQMLSIMLYHKRFF-PYYVSNILAGLDENGKGCIYSYD 149
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFW----QPGLSP-----EQLFEVCSQVVIQAC 174
+ CE KT + AGGSA ++ + ++ Q G++P E+ + V A
Sbjct: 150 PIGHCE--KTTYRAGGSAGALLQPLLDNQIGYKNQEGVTPTPVTQEKAVAILKDVFTSAA 207
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G G T+ ++ D + A R D
Sbjct: 208 ERDIYTGDGITIKIITKDGIKDSSFALRKD 237
>gi|308502323|ref|XP_003113346.1| CRE-PBS-6 protein [Caenorhabditis remanei]
gi|308265647|gb|EFP09600.1| CRE-PBS-6 protein [Caenorhabditis remanei]
Length = 258
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 93/205 (45%), Gaps = 14/205 (6%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYE-NKVHQMSPHLYLINPGLCADGMQFAE 63
+GG+ A++G+N + D + Q D I + K+H ++ + L G D +Q +
Sbjct: 50 EGGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIHVLNDSIILTTSGFYGDVLQLKK 109
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y ++ +S D A + S LY R+ P + I+AG ++G+ + +
Sbjct: 110 VLQSRLHKYRFDYRADMSVDLCAELLSRNLYYRRFF-PYYTGAILAGI-DENGKGAVFSY 167
Query: 124 DMAGCETRKTDFVAGGSAQNMIM----------GIGESFWQPGLSPEQLFEVCSQVVIQA 173
D GC R T + A G+A+ MI+ + E + +P L+ E+ + A
Sbjct: 168 DPIGCIERLT-YSASGAAEPMIIPFLDCQIGHVTLAEGYERPQLTLERAISLMKDSFRGA 226
Query: 174 CERDTKSGWGATVYVVEPDKVTIRK 198
ER+ +G + + E K ++K
Sbjct: 227 AEREISTGDKIHLVIAETGKPVVQK 251
>gi|443896401|dbj|GAC73745.1| 20S proteasome, regulatory subunit beta type PSMB3/PUP3
[Pseudozyma antarctica T-34]
Length = 99
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 48/93 (51%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG++VA GKNC I D L Q T+A +KV +++ Y+ PGL +D E+
Sbjct: 7 NGGSVVAAKGKNCVVIASDLRLGQQAMTVACNFDKVFRVTEKTYIGLPGLASDVSTLRER 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARK 97
R Y E+ I P+ FA + S LY R+
Sbjct: 67 FRYRVNMYKMKEEREIEPEIFANLVSSTLYERR 99
>gi|198424168|ref|XP_002121356.1| PREDICTED: similar to predicted protein [Ciona intestinalis]
Length = 229
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 87/207 (42%), Gaps = 9/207 (4%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG I+A+AG + + D L QG K Q++ + L G D + +
Sbjct: 25 NGGNILAVAGGDFAVVASDTRLSQGFMIHTRDHPKAVQLTANTVLAQSGFEGDSLTLKKH 84
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ +R Y + S AA+ S LY ++ P ++ I+AG + G+ + + D
Sbjct: 85 VQMRIGMYEHNHGKTPSTSAIAAMISKMLYYKRFF-PYYVYNIVAGL-DNEGKGCVYSYD 142
Query: 125 MAGCETRKTDFVAGGSAQ-------NMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERD 177
G R+ AG + + N I S P LS E+ ++C I A ERD
Sbjct: 143 PVGSYEREQYRAAGAANELLQPLLDNQIGFKNMSEAGPPLSKERAVQLCIDCFISAAERD 202
Query: 178 TKSGWGATVYVVEPDKVTIRKIATRMD 204
+G + V++ D V +K R D
Sbjct: 203 ITTGDCVLIQVIDKDGVETKKFPLRRD 229
>gi|413943570|gb|AFW76219.1| hypothetical protein ZEAMMB73_756098 [Zea mays]
Length = 99
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 49/93 (52%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G A+VAM GKNCFAI D L TIA +V ++ LY+ GL D ++
Sbjct: 7 NGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRVFKIHDKLYIGLSGLATDAQTLYQR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARK 97
+ R Y E+ + P+TFA++ S LY ++
Sbjct: 67 LVFRHKLYQLREERDMKPETFASLVSALLYEKR 99
>gi|72389907|ref|XP_845248.1| proteasome beta-1 subunit [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|4218582|emb|CAA10283.1| proteasome beta-1 subunit [Trypanosoma brucei rhodesiense]
gi|62359956|gb|AAX80381.1| proteasome beta-1 subunit, putative [Trypanosoma brucei]
gi|70801783|gb|AAZ11689.1| proteasome beta-1 subunit, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|261328641|emb|CBH11619.1| proteasome beta-1 subunit, putative [Trypanosoma brucei gambiense
DAL972]
Length = 282
Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 87/198 (43%), Gaps = 15/198 (7%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G I+A++ K+ + D G + + NK+ +++ +Y G AD AE+
Sbjct: 54 GTTIMAVSYKDGVVLAADSRTSTGAYVVNRASNKLTKLAKRIYCCRSGSAADTQALAEQ- 112
Query: 66 TLRTANYVASEQS----PISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLS 121
TANY+ S ++ P++ T A I Y K I I+AG+ P +G S
Sbjct: 113 ---TANYLESYETDISQPVNVATAANIFKKLCYMNKWNITAGI--IVAGYDPLNGGSVYS 167
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
C K D+ GGS + ++ ++PG++ E+ C + V A RD SG
Sbjct: 168 IPTGGACV--KLDYALGGSGSVFLYSFFDANYKPGMTKEECIRFCQRAVAHAYSRDGSSG 225
Query: 182 ---WGATVYVVEPDKVTI 196
++ EP+ VT+
Sbjct: 226 GLIRTIALHQGEPEDVTV 243
>gi|412993855|emb|CCO14366.1| predicted protein [Bathycoccus prasinos]
Length = 243
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 91/215 (42%), Gaps = 18/215 (8%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
N+GG ++A+AG++ D + G + KV +MSP + + G AD +
Sbjct: 33 NNGGTVMAVAGEDYVICAADTRMSTGYSIMTRQYTKVDEMSPKTLMASAGFMADAATLKK 92
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPD-SGEVFLST 122
+ R Y + PI FA + S LY R+ P + I+AG + G VF T
Sbjct: 93 LLKGRCDQYQFANNKPIGCVAFAQMLSNTLYMRRFF-PYYAFNIVAGLDAEGKGAVF--T 149
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGESFWQ-------PG------LSPEQLFEVCSQV 169
D G R T++ GS Q +IM + ++ + P LS E+ ++
Sbjct: 150 YDAVGSYER-TNYSCQGSGQQLIMPVLDNQLKTVSPLVLPAVSSATPLSEEEAIDLIKDC 208
Query: 170 VIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A ERD +G ++V+ D + + + D
Sbjct: 209 FATAGERDIYTGDAVELFVMNKDGIRKETMPLKTD 243
>gi|156547425|ref|XP_001605493.1| PREDICTED: proteasome subunit beta type-1-like isoform 1 [Nasonia
vitripennis]
gi|345484470|ref|XP_003425047.1| PREDICTED: proteasome subunit beta type-1-like isoform 2 [Nasonia
vitripennis]
Length = 236
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 85/210 (40%), Gaps = 12/210 (5%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG++VA+AG + I D L G + K+ +S L G D +
Sbjct: 30 DNGGSVVALAGDDFSLIAADSRLSAGFSIYTRKQQKLFTLSETSVLGCSGCWCDILTLTR 89
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
M R Y +S A + S LY ++ P +IN I+AG + V
Sbjct: 90 VMAARMQMYKHEHHKTMSTPAAAQMLSTMLYYKRFF-PYYINNILAGLDEEGKGVIYRYD 148
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGI---------GESFWQPGLSPEQLFEVCSQVVIQAC 174
+ CE K +VAGGSA ++ + E+ + L+ E+ + V I A
Sbjct: 149 PVGHCE--KNTYVAGGSAGALLQPLLDNQVGYLNQENVEKIPLTKEKALSIVKDVFISAA 206
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G G + ++ D + R D
Sbjct: 207 ERDIYTGDGINIKIITKDGIVDETFDLRRD 236
>gi|440494438|gb|ELQ76818.1| 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3
[Trachipleistophora hominis]
Length = 201
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 88/192 (45%), Gaps = 11/192 (5%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G IVAM + + D G++ + NK+ +++P +Y G + AE +
Sbjct: 8 GTTIVAMKFEGGVIMAADSRTSMGNYVVNRVSNKLTKLAPKIYCCRSGRSSHTQAVAEYV 67
Query: 66 TLRTANYVA--SEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGF-YPDSGEVFLST 122
RT N +A +E+ P+ D I + Y LT+ + I+AG+ D G V+
Sbjct: 68 ASRT-NLIAYTNEREPLVRDAANLIRAVVYYNPMLTASI----IVAGYDEEDKGSVYSIN 122
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGW 182
L G K ++ GGS + G +S ++ +S E+ FE+ ++V A +RD SG
Sbjct: 123 L---GGSLLKREWAMGGSGSAFLYGYCDSMYRSDMSFEEKFELTKKLVQLAIKRDNMSGG 179
Query: 183 GATVYVVEPDKV 194
+ V+ + V
Sbjct: 180 CIRMTVIRREGV 191
>gi|398011837|ref|XP_003859113.1| unnamed protein product [Leishmania donovani]
gi|322497326|emb|CBZ32401.1| unnamed protein product [Leishmania donovani]
Length = 283
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 8/178 (4%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G I+A++ K + D G + + NK+ +++ +Y G AD AE
Sbjct: 54 GTTILAVSYKGGVVLAADSRTSSGTYVVNRASNKLTKLTEKIYCCRSGSAADTQALAE-- 111
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINP--IIAGFYPDSGEVFLSTL 123
R +NY+ S Q+ I D A A+ + + I+ I+AG+ P +G S
Sbjct: 112 --RVSNYLGSYQTDIGADVNVATAANLFHKMCYVNRWNISAGIIVAGYDPINGGSVYSIP 169
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
C K D+ GGS + ++ ++PG+S + C + V A RD SG
Sbjct: 170 SGGSCV--KLDYALGGSGSIFLYSFFDANYKPGMSKSECVAFCQRAVAHAYSRDGSSG 225
>gi|330791448|ref|XP_003283805.1| hypothetical protein DICPUDRAFT_45058 [Dictyostelium purpureum]
gi|325086304|gb|EGC39696.1| hypothetical protein DICPUDRAFT_45058 [Dictyostelium purpureum]
Length = 236
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 96/215 (44%), Gaps = 18/215 (8%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTI-AEYENKVHQMSPHLYLINPGLCADGMQF 61
+++GG ++A+AGK+ I D + G + I + KV Q++ L G+ AD +
Sbjct: 27 VDNGGTVMAVAGKDYCVIAGDTRMSDGGYGIQTRHYTKVFQLTNKCVLATSGMQADTIAL 86
Query: 62 AEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLS 121
+++ L Y P+S A S LY ++ P + ++AG + GE ++
Sbjct: 87 QKRLKLMLETYQKEHGKPMSTPAIAQFLSNTLYYKRFF-PYYTFNLVAGV-DEKGEGWIW 144
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFE-----VCSQVV------ 170
T D G R + + GS +++ + ++ Q +Q+ + C QVV
Sbjct: 145 TYDAVGSHER-VKYSSQGSGNQLVIPLLDN--QVAKRNQQIIQGNGDVSCDQVVSFVKDA 201
Query: 171 -IQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A ERD +G A + VV+ D V K ++D
Sbjct: 202 ITSAGERDIYTGDFADIVVVDKDGVRWEKFELKLD 236
>gi|413935899|gb|AFW70450.1| hypothetical protein ZEAMMB73_290009 [Zea mays]
Length = 200
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 49/93 (52%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G A+VAM GKNCFAI D L TIA +V ++ LY+ GL D ++
Sbjct: 108 NGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFRRVFKVHDKLYIGLSGLATDAQTLYQR 167
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARK 97
+ R Y E+ + P+TFA++ S LY ++
Sbjct: 168 LVFRHKLYQLMEERDMKPETFASLVSALLYEKR 200
>gi|442749997|gb|JAA67158.1| Putative 20s proteasome regulatory subunit beta type psmb1/pre7
[Ixodes ricinus]
Length = 232
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 88/210 (41%), Gaps = 12/210 (5%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG+IVA+AG++ I D L G ++K+ ++S L + G D + F
Sbjct: 26 DNGGSIVAIAGEDFVVIASDSRLSAGYHIYTRDQSKLFKLSDKCILGSGGCWCDILTFTR 85
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y+ P+S A + LY ++ P +I+ I+AG + S
Sbjct: 86 FLEARMKMYLHEHHKPMSTPAVAQLIVTMLYHKRFF-PYYISNILAGLDEEGKGCIYSYD 144
Query: 124 DMAGCETRKTDFVAGGSAQNMI-------MGIGESFWQPGLSP--EQLFEVCSQVVIQAC 174
+ CE + + +GGS ++ +G + P E+ + V I A
Sbjct: 145 PVGHCE--RVQYRSGGSGSALLQPLLDSQIGFKNQVGAVAVPPTRERAISIIKDVFISAA 202
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G V +++ D V + R D
Sbjct: 203 ERDMYTGDSVIVNIIDKDGVHEERFPLRRD 232
>gi|157865801|ref|XP_001681607.1| putative proteasome beta-1 subunit [Leishmania major strain
Friedlin]
gi|68124905|emb|CAJ02350.1| putative proteasome beta-1 subunit [Leishmania major strain
Friedlin]
Length = 283
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 8/178 (4%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G I+A++ K + D G + + NK+ +++ +Y G AD AE
Sbjct: 54 GTTILAVSYKGGVVLAADSRTSSGTYVVNRASNKLTKLTEKIYCCRSGSAADTQALAE-- 111
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINP--IIAGFYPDSGEVFLSTL 123
R +NY+ S Q+ I D A A+ + + I+ I+AG+ P +G S
Sbjct: 112 --RVSNYLGSYQTDIGADVNVATAANLFHKMCYVNRWNISAGIIVAGYDPINGGSVYSIP 169
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
C K D+ GGS + ++ ++PG+S + C + V A RD SG
Sbjct: 170 SGGSCV--KLDYALGGSGSIFLYSFFDANYKPGMSKSECVAFCQRAVAHAYSRDGSSG 225
>gi|307214019|gb|EFN89226.1| Proteasome subunit beta type-1 [Harpegnathos saltator]
Length = 236
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 91/210 (43%), Gaps = 12/210 (5%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG++VA+AG + + D L G ++K+ +S L G D +
Sbjct: 30 DNGGSVVALAGDDFCVVAADTRLSTGFSIYTRQQDKLFPLSKTTILGCSGCWCDTLTLTR 89
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
++ R Y Q +S A + S LY ++ P +++ I+AG + S
Sbjct: 90 LLSARMQMYKHEHQKEMSTPATAQMLSTMLYYKRFF-PYYVSNILAGLDENGKGCIYSYD 148
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFW----QPGLSP-----EQLFEVCSQVVIQAC 174
+ CE KT + AGGSA ++ + ++ Q G++P E+ + V A
Sbjct: 149 PIGHCE--KTTYRAGGSAGALLQPLLDNQIGYKNQEGITPVNLTQEKAVAILKDVFTSAA 206
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G G T+ ++ D + A R D
Sbjct: 207 ERDIYTGDGITIKIITKDGIQDISFALRKD 236
>gi|268570354|ref|XP_002648488.1| C. briggsae CBR-PBS-6 protein [Caenorhabditis briggsae]
Length = 258
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 91/205 (44%), Gaps = 14/205 (6%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYE-NKVHQMSPHLYLINPGLCADGMQFAE 63
+GG+ A++G+N + D + Q D I + K+H ++ + L G D +Q +
Sbjct: 50 EGGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIHVLNDSIILTTSGFYGDVIQLKK 109
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y +S +S D A + S LY R+ P + I+AG + G+ + +
Sbjct: 110 VLQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFF-PYYTGAILAGI-DEHGKGAVFSY 167
Query: 124 DMAGCETRKTDFVAGGSAQNMIM----------GIGESFWQPGLSPEQLFEVCSQVVIQA 173
D GC R + A G+A+ MI+ + E + +P L+ E+ + A
Sbjct: 168 DPIGCIER-LGYSASGAAEPMIIPFLDCQIGHVTLAEGYERPQLTLERAISLMKDSFRGA 226
Query: 174 CERDTKSGWGATVYVVEPDKVTIRK 198
ER+ +G + + E K ++K
Sbjct: 227 AEREISTGDKIHLVIAEAGKPVVQK 251
>gi|170035625|ref|XP_001845669.1| proteasome subunit beta type 1 [Culex quinquefasciatus]
gi|167877642|gb|EDS41025.1| proteasome subunit beta type 1 [Culex quinquefasciatus]
Length = 231
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 94/212 (44%), Gaps = 16/212 (7%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG++VA+AG + IG D L G +NK+ ++S L + G D +
Sbjct: 25 SNGGSVVAIAGDDFAVIGADTRLSSGYSIHTRTQNKLFRLSEGTVLASTGCWCDTLALTS 84
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ +R Y Q ++ A + S +Y R+ P +++ ++AG + V S
Sbjct: 85 LVKVRMQMYKDQHQKNMTTPAVAQMLSILMYNRRFF-PYYVSNVLAGLDEEGRGVVYSYD 143
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLS--------PEQLFEVCSQV---VIQ 172
+ CE KT + AGGSA ++ + ++ Q GL P QL + S + I
Sbjct: 144 PIGHCE--KTTYRAGGSAGPLLQPVLDN--QIGLKNMVGASTEPVQLAKAVSIIKDTFIS 199
Query: 173 ACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A ERD +G + ++ D + + R D
Sbjct: 200 ATERDIYTGDSVIINIITKDGIKEEVVQLRKD 231
>gi|444720794|gb|ELW61563.1| Proteasome subunit beta type-3 [Tupaia chinensis]
Length = 86
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%)
Query: 138 GGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIR 197
G+ + G+ ES W+ + PE LFE SQ ++ A +RD G G V+V E DK+T R
Sbjct: 20 SGTCSEQMYGMCESLWEANMDPEHLFETISQAMLNAVDRDAVPGIGVIVHVTEKDKITTR 79
Query: 198 KIATRMD 204
RMD
Sbjct: 80 TPKARMD 86
>gi|361126076|gb|EHK98092.1| putative proteasome component PUP3 [Glarea lozoyensis 74030]
Length = 135
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 34/55 (61%)
Query: 150 ESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
E + P PE LFE SQ ++ A +RD SGWGA VYV+E DKVT R + R D
Sbjct: 81 EKRFGPYFGPEDLFETISQALLNAVDRDALSGWGAHVYVIEKDKVTKRLLKGRQD 135
>gi|158293754|ref|XP_315096.4| AGAP004991-PA [Anopheles gambiae str. PEST]
gi|157016597|gb|EAA10482.4| AGAP004991-PA [Anopheles gambiae str. PEST]
Length = 231
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 89/210 (42%), Gaps = 12/210 (5%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG++VA+AG++ IG D L G +NK+ ++S L + G D +
Sbjct: 25 SNGGSVVAIAGEDFAVIGADTRLSSGYSIHTRTQNKLFRLSDKTVLASTGCWCDTLALTS 84
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ +R Y Q +S A + S +Y R+ P +++ ++AG D V S
Sbjct: 85 LVKVRMQMYKDQHQKNMSTPAVAQMLSILMYNRRFF-PYYVSNVLAGLDQDGKGVVYSYD 143
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGI------GESFWQPGLSP---EQLFEVCSQVVIQAC 174
+ CE T + AGGSA ++ + ++ P E+ + I A
Sbjct: 144 PIGHCEM--TTYRAGGSAGPLLQPVLDNQIGQKNMLNADPEPVKMEKAISIIKDTFISAT 201
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G + ++ D + + R D
Sbjct: 202 ERDIYTGDSVIINIITKDGIKEETLHLRKD 231
>gi|339897076|ref|XP_001463938.2| putative proteasome beta-1 subunit [Leishmania infantum JPCM5]
gi|321399047|emb|CAM66312.2| putative proteasome beta-1 subunit [Leishmania infantum JPCM5]
Length = 283
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 8/178 (4%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G I+A++ K + D G + + NK+ +++ +Y G AD AE
Sbjct: 54 GTTILAVSYKGGVVLAADSRTSSGTYVVNRASNKLTKLTEKIYCCRSGSAADTQALAE-- 111
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINP--IIAGFYPDSGEVFLSTL 123
R +NY+ S Q+ I D A A+ + + I+ I+AG+ P +G S
Sbjct: 112 --RVSNYLGSYQTDIGADVNVATAANLFHKMCYVNRWNISAGIIVAGYDPINGGSVYSIP 169
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
C K D+ GGS + ++ ++PG+S + C + V A RD SG
Sbjct: 170 SGGSCV--KLDYALGGSGSIFLYSFFDANYKPGMSKGECVAFCQRAVAHAYSRDGSSG 225
>gi|289742321|gb|ADD19908.1| 20S proteasome regulatory subunit beta type PSMB1/PRE7 [Glossina
morsitans morsitans]
Length = 236
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 93/213 (43%), Gaps = 15/213 (7%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG+IVA+AG + I D L G ENK+ Q+S + L + G D +
Sbjct: 27 SNGGSIVAIAGNDFAVIAADSRLSSGYTIHTRNENKLFQLSSNAVLGSTGCWCDTLALTA 86
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y + +S D A + S +Y R+ P +++ ++AG + V S
Sbjct: 87 LVKARMQMYEHTHSKTMSTDATAQMLSILMYNRRFF-PYYVSNVLAGLNSEGKGVVYSYD 145
Query: 124 DMAGCETRKTDFVAGGSAQNMIM-----GIG------ESFWQPG-LSPEQLFEVCSQVVI 171
+ E K++ AGGSA ++ IG E P L+ E+ + S I
Sbjct: 146 PIGHFE--KSNSRAGGSAGALLQPVLDNQIGLKNIKMEHIGFPAELTKERAVAIASDAFI 203
Query: 172 QACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A ERD +G + ++ + ++++ R D
Sbjct: 204 SATERDIYTGDSVQINIITKSGIEVKELQLRKD 236
>gi|255076203|ref|XP_002501776.1| predicted protein [Micromonas sp. RCC299]
gi|226517040|gb|ACO63034.1| predicted protein [Micromonas sp. RCC299]
Length = 229
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 89/216 (41%), Gaps = 20/216 (9%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
N+GG ++A+AG++ D + G + K+ QMS L + G AD + +
Sbjct: 19 NNGGTVLAVAGEDYVVCAADTRMSTGYNILTRDYKKIDQMSDKCVLASAGFMADAVTLKK 78
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPD-SGEVFLST 122
+ R Y P+ +FA + S LY R+ P + I+AG + G VF T
Sbjct: 79 TLKARCTTYEFQNDKPMGCVSFAQMLSNTLYYRRFF-PYYTFNIVAGLDAEGKGAVF--T 135
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGI--------------GESFWQPGLSPEQLFEVCSQ 168
D G R T++ GS Q +IM + +S P LS + ++
Sbjct: 136 YDAVGSYER-TNYSCQGSGQGLIMPVLDNQLKTVSPLVLPAQSSATP-LSESEAVDLVKD 193
Query: 169 VVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A ERD +G ++++ D V ++D
Sbjct: 194 CFATAGERDIYTGDTVEIWIINKDGVRKEYQELKLD 229
>gi|116753407|ref|YP_842525.1| proteasome endopeptidase complex [Methanosaeta thermophila PT]
gi|121694316|sp|A0B5B1.1|PSB_METTP RecName: Full=Proteasome subunit beta; AltName: Full=20S proteasome
beta subunit; AltName: Full=Proteasome core protein
PsmB; Flags: Precursor
gi|116664858|gb|ABK13885.1| proteasome endopeptidase complex, beta component, Threonine
peptidase, MEROPS family T01A [Methanosaeta thermophila
PT]
Length = 207
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 79/189 (41%), Gaps = 13/189 (6%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
DGG ++A + G F + K++Q+ + L G+ D
Sbjct: 16 DGGVVLASESRATM----------GSFIASRTAKKIYQIDDLVGLTTAGVVGDAQALVRM 65
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ Y P++ ++ S L AR+ P + ++ G ++F +LD
Sbjct: 66 IQAEARLYRMQRGEPLTIKAITSLLSNILSARRYF-PFLVQLVVGGVDKMGPKIF--SLD 122
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G + + D V+ GS + G+ ES ++PGLS + +C + V A +RD+ SG G
Sbjct: 123 ALGGQIEEHDIVSTGSGSPIAYGVLESLYKPGLSIQDGSVLCVRAVHTAMKRDSASGNGI 182
Query: 185 TVYVVEPDK 193
+ + D+
Sbjct: 183 ALVRITKDR 191
>gi|435851174|ref|YP_007312760.1| proteasome endopeptidase complex, archaeal, beta subunit
[Methanomethylovorans hollandica DSM 15978]
gi|433661804|gb|AGB49230.1| proteasome endopeptidase complex, archaeal, beta subunit
[Methanomethylovorans hollandica DSM 15978]
Length = 210
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 3/165 (1%)
Query: 29 GDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAI 88
G F ++ K++Q+ + + G D Q M++ + Y + P++ +
Sbjct: 32 GHFIASKTAKKIYQIDDLVGMTTAGSVGDAQQIVRVMSVESHLYKMRRKEPMTIKGITTL 91
Query: 89 ASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGI 148
S L ++ PL + ++ G + +F +LD G +T VA GS M G+
Sbjct: 92 LSNILSGQRY-YPLMVQLLVGGVDKNGPAIF--SLDALGGTIEETKAVATGSGSPMAYGV 148
Query: 149 GESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDK 193
E + GLS E+ E+ + + A +RD+ SG G V V+ DK
Sbjct: 149 LEDRFVDGLSIEEGVELAIRALHNAMKRDSASGNGIDVVVITADK 193
>gi|282165069|ref|YP_003357454.1| proteasome subunit beta [Methanocella paludicola SANAE]
gi|302595754|sp|D1Z199.1|PSB_METPS RecName: Full=Proteasome subunit beta; AltName: Full=20S proteasome
beta subunit; AltName: Full=Proteasome core protein
PsmB; Flags: Precursor
gi|282157383|dbj|BAI62471.1| proteasome subunit beta [Methanocella paludicola SANAE]
Length = 205
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 84/191 (43%), Gaps = 5/191 (2%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G V + N + + G+ + K++Q++ ++ + G DG + A +
Sbjct: 8 GTTTVGIICNNGLVLATERRATMGNLIASRDAQKIYQLTDNIAMTIAGSVGDGQRLARML 67
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
+ + P+S + + + S L+ ++ +I ++ G ++F +LD
Sbjct: 68 QAESKLFELRRHGPMSINALSMLLSNLLWEYRI---FYIQVLVGGVDKSGPKLF--SLDP 122
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
AG + F + GS + G+ E ++ +S EQ E+ ++ + A +RD+ SG G
Sbjct: 123 AGGRITEVKFSSTGSGSPLAYGVLEDRYKQDMSVEQGVELAAKALESAMKRDSASGNGMQ 182
Query: 186 VYVVEPDKVTI 196
V+ P KV I
Sbjct: 183 FCVITPGKVEI 193
>gi|341897234|gb|EGT53169.1| CBN-PBS-6 protein [Caenorhabditis brenneri]
Length = 258
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 92/205 (44%), Gaps = 14/205 (6%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYE-NKVHQMSPHLYLINPGLCADGMQFAE 63
+GG+ A+AG+N + D + Q D I + K+H ++ + L G D +Q +
Sbjct: 50 EGGSTCAIAGENFAIVASDTRMTQNDINILTRDAEKIHVLNDSIVLTTSGFYGDVIQLKK 109
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y ++ +S D A + + LY R+ P + I+AG ++G+ + +
Sbjct: 110 VLQSRLHKYRFDYRADMSVDLCAELLARNLYYRRFF-PYYTGAILAGI-DENGKGAVFSY 167
Query: 124 DMAGCETRKTDFVAGGSAQNMIM----------GIGESFWQPGLSPEQLFEVCSQVVIQA 173
D GC + + A G+A+ MI+ + E + +P L+ E+ + A
Sbjct: 168 DPIGC-IERIAYSASGAAEPMIIPFLDCQIGHVTLSEGYERPELTLERAISLMKDSFRGA 226
Query: 174 CERDTKSGWGATVYVVEPDKVTIRK 198
ER+ +G + + E K ++K
Sbjct: 227 AEREISTGDKIHLVIAEAGKPVVQK 251
>gi|326915585|ref|XP_003204095.1| PREDICTED: proteasome subunit beta type-1-like [Meleagris
gallopavo]
Length = 237
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 92/209 (44%), Gaps = 12/209 (5%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG ++A+AG++ + D L +G + K ++++ H + G D + +
Sbjct: 32 NGGTVLAIAGEDFCIVASDTRLSEGYAIHSRDSPKCYKLTEHTVIGCSGFHGDCLTLTKI 91
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y S ++ AA+ S LY+R+ P ++ II G + G+ + + D
Sbjct: 92 IEARLKMYKHSNNKTMTTGAIAAMLSTILYSRRFF-PYYVYNIIGGL-DEEGKGAVYSFD 149
Query: 125 MAGCETRKTDFVAGGSAQNMIM-----GIG----ESFWQPGLSPEQLFEVCSQVVIQACE 175
G R + F AGGSA M+ IG ++ L+ E+ ++ V I A E
Sbjct: 150 PVGSYQRDS-FKAGGSASAMLQPLLDNQIGFKNMQNVEHVPLTLEKALQLVKDVFISAAE 208
Query: 176 RDTKSGWGATVYVVEPDKVTIRKIATRMD 204
RD +G + VV D + I R D
Sbjct: 209 RDVYTGDALKICVVTKDGIKEETIQLRKD 237
>gi|225714818|gb|ACO13255.1| Proteasome subunit beta type-6 precursor [Esox lucius]
Length = 231
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 85/198 (42%), Gaps = 6/198 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ IG D G + +K+ + H++ PG AD A
Sbjct: 28 VSTGTTIMAVEFDGGVVIGADSRTTTGAYIANRVTDKLTPIHDHIFCCRPGSAADTQAVA 87
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGF-YPDSGEVFLS 121
+ +T + + P T A + Y + L I+AG+ G+V+
Sbjct: 88 DAVTYQLGFHSIELDEPPLVQTAANLFKQMCY--RYREELMAGIIVAGWDKRKGGQVY-- 143
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
T+ M G R+ V GGS + I G +S ++PG++ E+ C+Q + A ERD SG
Sbjct: 144 TVPMGGMIVRQPVSV-GGSGSSYIYGFMDSNYKPGMTKEECLHFCTQALTLAMERDGSSG 202
Query: 182 WGATVYVVEPDKVTIRKI 199
A + + D V R +
Sbjct: 203 GVARLAAITEDGVERRVV 220
>gi|448409399|ref|ZP_21574697.1| Proteasome endopeptidase complex [Halosimplex carlsbadense 2-9-1]
gi|445673002|gb|ELZ25569.1| Proteasome endopeptidase complex [Halosimplex carlsbadense 2-9-1]
Length = 240
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 84/204 (41%), Gaps = 10/204 (4%)
Query: 2 SLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQ 60
+ + G IVA+A + D + G FT + K+ Q+ P L G
Sbjct: 34 TFDTGTTIVAIATDGGVVMAADQRASLGGRFTTNKNAEKISQVHPTAALAISGSVGPAQN 93
Query: 61 FAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFL 120
+ T+ Y + + P+S + + A L + L + PI+ G + G V+
Sbjct: 94 LIRSIRAETSLYESRREGPMS------MRALSQTAGHLVAGLPVAPILGGVDAEGGHVY- 146
Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKS 180
LD G TD+ AGGS + G+ E + PG + ++ E V A ERDT S
Sbjct: 147 -ELD-GGGSVMATDYAAGGSGMQVAYGVLERRFDPGATLDEATEAAVAAVEAASERDTAS 204
Query: 181 GWGATVYVVEPDKVTIRKIATRMD 204
G G TV + + V I I D
Sbjct: 205 GNGVTVATITDEGVEIEGIGDGRD 228
>gi|20094664|ref|NP_614511.1| protease subunit of the proteasome [Methanopyrus kandleri AV19]
gi|74559570|sp|Q8TW10.1|PSB_METKA RecName: Full=Proteasome subunit beta; AltName: Full=20S proteasome
beta subunit; AltName: Full=Proteasome core protein
PsmB; Flags: Precursor
gi|19887825|gb|AAM02441.1| Protease subunit of the proteasome [Methanopyrus kandleri AV19]
Length = 210
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 77/188 (40%), Gaps = 4/188 (2%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
L G V + + D V G+ + K+ ++ ++ + G AD +
Sbjct: 7 LTKGTTTVGILADKGVVLAADRRAVMGNLIAGKQVKKIFRIHDYIGVTTAGSVADAQKIV 66
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYAR-KLTSPLFINPIIAGFYPDSGEVFLS 121
+ M Y IS A + S L++ K P + I+ GF D ++
Sbjct: 67 DLMRAEARLYELRHNRMISARALANMISHVLHSSLKAFRPYLVQLIVGGFNDDDPALY-- 124
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
LD +G + D+ A GS G+ E+ ++ G+S + EV + V A ERDT +G
Sbjct: 125 NLDPSGSIIEE-DYTATGSGSPTAYGVLEAEYEEGMSLDDAIEVAVRAVKSALERDTGTG 183
Query: 182 WGATVYVV 189
G TV +
Sbjct: 184 EGVTVVTI 191
>gi|307170452|gb|EFN62722.1| Proteasome subunit beta type-1 [Camponotus floridanus]
Length = 236
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 91/210 (43%), Gaps = 12/210 (5%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG++VA+AG + I D L G ++K+ +S L G D +
Sbjct: 30 DNGGSVVALAGDDFCVIAADTRLSTGFSIYTREQDKLFPLSNTTILGCSGCWCDTLTLTR 89
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
++ R Y Q ++ A + S LY ++ P +++ I+AG + S
Sbjct: 90 LLSARMQMYKHEHQKEMTTPAAAQMLSIMLYHKRFF-PYYVSNILAGLDENGKGCIYSYD 148
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFW----QPGLSP-----EQLFEVCSQVVIQAC 174
+ CE KT + AGGSA ++ + ++ Q G++P E+ + V A
Sbjct: 149 PIGHCE--KTTYRAGGSAGALLQPLLDNQIGYKNQEGVTPAVLTQEKAVAILKDVFTSAA 206
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G G ++ ++ D + A R D
Sbjct: 207 ERDIYTGDGISIKIITKDGIKDSSFALRKD 236
>gi|323455458|gb|EGB11326.1| hypothetical protein AURANDRAFT_52492 [Aureococcus anophagefferens]
Length = 229
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 87/197 (44%), Gaps = 10/197 (5%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE-- 63
GG+++AMAGK A+ +D L QG+ + + +V + P L GL D E
Sbjct: 25 GGSVLAMAGKKSVALVLDKRLGQGNALVGDEACRVLECGPRAVLALRGLQGDVQTLLEDV 84
Query: 64 --KMTLRTANYVASEQSPISPDTFAAIASWELYARKLT--SPLF-INPIIAGFYPDSGEV 118
K+ LR S S P +A+ S LY +L+ +P + + P+I G D G
Sbjct: 85 DAKLRLRRLEEGPSAAS--EPKAVSALVSVMLYGGRLSGGAPGYAVEPVICGLGAD-GAP 141
Query: 119 FLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDT 178
+L D G FV G+A + + G E+ ++ L + L + + +RD
Sbjct: 142 YLCAQDGLGARMVSDTFVVAGTAASSLYGACEATFEADLEGDALLDAALAAMAAGLDRDC 201
Query: 179 KSGWGATVYVVEPDKVT 195
SG V+V+ D T
Sbjct: 202 LSGREVVVHVITRDGTT 218
>gi|410912074|ref|XP_003969515.1| PREDICTED: proteasome subunit beta type-1-B-like [Takifugu
rubripes]
Length = 237
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 91/209 (43%), Gaps = 12/209 (5%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG ++A+AG + + D L +G + K ++++ L G D + +
Sbjct: 32 NGGTVLAVAGDDFAIVASDTRLSEGYSIHSRDSPKCYKLTDTTVLGCSGFHGDCLTLTKI 91
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y S +S AA+ S LY R+ P ++ II G + G+ + + D
Sbjct: 92 IDARLKMYKHSNNKTMSSGAIAAMLSTILYGRRFF-PYYVYNIIGGL-DEEGKGAVYSFD 149
Query: 125 MAGCETRKTDFVAGGSAQNMIM-----GIG----ESFWQPGLSPEQLFEVCSQVVIQACE 175
G R T + AGGSA M+ IG E+ Q LS E+ ++ V I A E
Sbjct: 150 PVGSYQRDT-YKAGGSASAMLQPLLDNQIGFKNMENVQQVPLSQEKAIQLVKDVFISAAE 208
Query: 176 RDTKSGWGATVYVVEPDKVTIRKIATRMD 204
RD +G + ++ + + + I R D
Sbjct: 209 RDVYTGDALRICIITKEGIKEQTIPLRKD 237
>gi|443720540|gb|ELU10244.1| hypothetical protein CAPTEDRAFT_147453 [Capitella teleta]
Length = 59
Score = 60.1 bits (144), Expect = 6e-07, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 33/47 (70%)
Query: 158 SPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
SP+ LFE SQ ++ +C+RD SGWG V+++E DKVT R + RMD
Sbjct: 13 SPDVLFEKVSQAMMSSCDRDAISGWGVVVHIIEKDKVTTRTLKARMD 59
>gi|321260412|ref|XP_003194926.1| 20S proteasome beta-type subunit; Pre7p [Cryptococcus gattii WM276]
gi|317461398|gb|ADV23139.1| 20S proteasome beta-type subunit, putative; Pre7p [Cryptococcus
gattii WM276]
Length = 272
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 91/204 (44%), Gaps = 24/204 (11%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG+I+A+AGK+ I D +G Y KV Q++ + L G ADG F +
Sbjct: 29 DNGGSILAIAGKDFSIIAGDTRQSEGYSIQTRYARKVWQLTDKVVLATNGFAADGNNFVK 88
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPD-SGEVFLST 122
++ R Y + P+S + A + LY ++ P ++ I+ G D SG V+ +
Sbjct: 89 RVKQRLEWYEHAHNKPMSLKSIARMIQTMLYGKRFF-PYYVYNILGGIEEDGSGAVY--S 145
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGI--------------GESFWQPGLSPEQLFEVCSQ 168
D G R+ A G+AQ++I G + + PG P L V S
Sbjct: 146 FDPVGSYEREA-CRAAGAAQSLIQPFLDNQVYFKNQQPEPGAAPFVPGNLP--LSTVLSL 202
Query: 169 VV---IQACERDTKSGWGATVYVV 189
VV A ER + G G +YVV
Sbjct: 203 VVDSFTSATERHIEVGDGMEIYVV 226
>gi|218884589|ref|YP_002428971.1| Proteasome subunit [Desulfurococcus kamchatkensis 1221n]
gi|390939081|ref|YP_006402819.1| proteasome endopeptidase complex subunit beta [Desulfurococcus
fermentans DSM 16532]
gi|302595704|sp|B8D673.1|PSB1_DESK1 RecName: Full=Proteasome subunit beta 1; AltName: Full=20S
proteasome beta subunit 1; AltName: Full=Proteasome core
protein PsmB 1; Flags: Precursor
gi|218766205|gb|ACL11604.1| Proteasome subunit [Desulfurococcus kamchatkensis 1221n]
gi|390192188|gb|AFL67244.1| proteasome endopeptidase complex, beta subunit [Desulfurococcus
fermentans DSM 16532]
Length = 202
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 78/173 (45%), Gaps = 4/173 (2%)
Query: 31 FTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAIAS 90
F ++ K+H ++ H+ + GL D + + L NY I + A + S
Sbjct: 32 FVLSRNARKIHMITNHIGVGFAGLMGDVNFLVKVLRLEAKNYELQHGREIKTRSLAKLLS 91
Query: 91 WELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGE 150
LY+ KL +P+ ++ G+ + +++ LD G + +VA GS + +G E
Sbjct: 92 VILYSYKL-APMLTEVVVGGYDEEGPSLYI--LDPVGSVIEE-KYVAVGSGAQLALGYIE 147
Query: 151 SFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRM 203
+ PGL ++ E+ V ERD SG G + V++ + ++I +M
Sbjct: 148 PRYNPGLGLKEAEELAVNAVKTVIERDVLSGDGIDLVVIDKNGYQSKEIIFKM 200
>gi|390364342|ref|XP_001187732.2| PREDICTED: LOW QUALITY PROTEIN: proteasome subunit beta type-1-like
[Strongylocentrotus purpuratus]
Length = 229
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 90/208 (43%), Gaps = 14/208 (6%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG I+AMAG + I D L +G F+I ++ + L +I+ +C+D +
Sbjct: 28 NGGTIMAMAGDDYAIIASDTRLSEG-FSIHTRDSPKNY---RLXVISIHICSDWPSLTKV 83
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+T R Y +S AA+ S LY R+ P + I+AG + G+ + + D
Sbjct: 84 LTARLKMYEHEHHKKMSTTAIAAMLSTILYYRRFF-PYYTYNILAGL-DEEGKGCVYSFD 141
Query: 125 MAGCETRKTDFVAGGSA-------QNMIMGIGESFWQPGLSP-EQLFEVCSQVVIQACER 176
G R+T AG S+ N I G + W P ++ + V I A ER
Sbjct: 142 PVGSYERETYRAAGSSSALLQPLLDNQIGGKNQEGWVKEPIPVDKAVALVKDVFISAAER 201
Query: 177 DTKSGWGATVYVVEPDKVTIRKIATRMD 204
D +G G ++V+ D + R D
Sbjct: 202 DIYTGDGIVLHVLTKDGCKEERFPLRRD 229
>gi|355571914|ref|ZP_09043122.1| proteasome endopeptidase complex, beta subunit [Methanolinea tarda
NOBI-1]
gi|354825010|gb|EHF09245.1| proteasome endopeptidase complex, beta subunit [Methanolinea tarda
NOBI-1]
Length = 213
Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 79/187 (42%), Gaps = 3/187 (1%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G V + ++ + + G ++ K++Q++ + + G D Q A M
Sbjct: 11 GTTTVGLVLRDAVVLASEMRATMGYLIASKKAKKIYQIADRIGMTTAGGVGDAQQIARLM 70
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
T+ + Y PI+ A + S L A + P ++ ++ G D G L +D
Sbjct: 71 TVECSLYQIRRGRPITIGAVATLLSNILNANRYY-PFYVQLLVGGV--DEGGPKLYAVDA 127
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
G +R+ + VA GS M G+ E + LS ++ + + + A +RD SG G
Sbjct: 128 LGGASREEEMVATGSGSPMAFGVLEDRYSKDLSEDEAVALAVRAIRSAMKRDAGSGEGIH 187
Query: 186 VYVVEPD 192
V V+ +
Sbjct: 188 VVVITKE 194
>gi|389612013|dbj|BAM19540.1| proteasome beta3 subunit [Papilio xuthus]
Length = 96
Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 45/86 (52%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA+VAM G++C AI D TI+ KV+QM P LY+ PGL D ++
Sbjct: 7 NGGAVVAMKGQDCVAIATDKRFGIQAQTISTNFPKVYQMGPTLYVGLPGLATDTQTVFQR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIAS 90
+ R Y E + P TF+A+ S
Sbjct: 67 LKFRMNLYELKENRVMRPKTFSAMLS 92
>gi|432331212|ref|YP_007249355.1| proteasome endopeptidase complex, archaeal, beta subunit
[Methanoregula formicicum SMSP]
gi|432137921|gb|AGB02848.1| proteasome endopeptidase complex, archaeal, beta subunit
[Methanoregula formicicum SMSP]
Length = 213
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 69/156 (44%), Gaps = 3/156 (1%)
Query: 38 NKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARK 97
KV+Q++ + + G D Q A + + Y PI+ A + S L +
Sbjct: 43 KKVYQVADRIGMTTAGGVGDAQQLARILNVECNLYQIRRSRPITVGATATLLSNYLNQNR 102
Query: 98 LTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGL 157
P ++ ++ G V+ ++D G T++ + VA GS M G+ E ++PG+
Sbjct: 103 YF-PYYVQLLVGGVDEKGPSVY--SVDAMGGATKEEEIVATGSGSPMAYGVLEDRYKPGM 159
Query: 158 SPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDK 193
+ E E+ + + A +RD SG G V + DK
Sbjct: 160 TEEMAIEIAVRGLKSAMKRDAGSGEGIHVVAITKDK 195
>gi|148227103|ref|NP_001080435.1| proteasome beta 1 subunit [Xenopus laevis]
gi|27694605|gb|AAH43739.1| Psmb1-prov protein [Xenopus laevis]
gi|114107802|gb|AAI23122.1| Psmb1 protein [Xenopus laevis]
Length = 239
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 92/209 (44%), Gaps = 12/209 (5%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG ++A+AG + + D L +G + K ++++ + G AD + +
Sbjct: 34 NGGTVLALAGDDFALVASDTRLSEGYSIHSRNTPKCYKLTDKTVIGCTGFHADCLTLTKI 93
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y S ++ AA+ S LY+R+ P ++ II G + G+ + + D
Sbjct: 94 IEARLKMYKHSNNKTMTSGAIAAMLSTILYSRRFF-PYYVYNIIGGL-DEEGKGAVYSFD 151
Query: 125 MAGCETRKTDFVAGGSAQNMIM-----GIG----ESFWQPGLSPEQLFEVCSQVVIQACE 175
G R + AGGSA M+ IG ++ Q L+ E+ ++ V I A E
Sbjct: 152 PVGSYQRDA-YKAGGSASAMLQPLLDNQIGYKNMQNVEQLPLTLEKALKLIKDVFISAAE 210
Query: 176 RDTKSGWGATVYVVEPDKVTIRKIATRMD 204
RD +G + +V D V I+ R D
Sbjct: 211 RDVYTGDALHISIVTKDGVREESISLRKD 239
>gi|195173300|ref|XP_002027430.1| GL20944 [Drosophila persimilis]
gi|194113282|gb|EDW35325.1| GL20944 [Drosophila persimilis]
Length = 224
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 91/214 (42%), Gaps = 16/214 (7%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
N+GG ++A+AGK+ IG D L G ++ + K+ +S + + G D +
Sbjct: 12 NNGGTVLAIAGKDFVVIGGDTRLSSGCAILSRTQTKLCPLSKQMVVAATGCWCDAVSLTN 71
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPD-SGEVFLST 122
+ ++ Y +S ++ A + S Y R+ P ++PI+ G D G VF +
Sbjct: 72 LLKVKQQGYENQHHKVMSIESMAQMLSVVQYQRRHL-PYNVSPILGGIDQDGQGAVF--S 128
Query: 123 LDMAGCETRKTDFVAG---GSAQNMIMG---------IGESFWQPGLSPEQLFEVCSQVV 170
D G R++ V G G Q ++ + E+ QP L+ E+ +
Sbjct: 129 YDCIGHFVRESSRVEGTAVGILQPVLDNQIGYTKKDLLDETSEQPALTKERALAIAKDAF 188
Query: 171 IQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
I A + D +G + V+ D + + K+ D
Sbjct: 189 ITAAQSDVFTGDSVIINVITKDSIKVEKMQLGKD 222
>gi|225714644|gb|ACO13168.1| Proteasome subunit beta type-1 precursor [Lepeophtheirus salmonis]
Length = 238
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 86/211 (40%), Gaps = 14/211 (6%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG + +AGK+ I D L ++ KV + + L G D + F
Sbjct: 32 DNGGTTIGIAGKDFVVIASDTRLCNSYDILSRDVPKVFDLGGNSVLGASGCWCDVLTFVR 91
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
R NY + +S A + S LY RK P +I+ ++AG D G + T
Sbjct: 92 VAESRIKNYNYTHGKEMSTSALAQMLSITLY-RKRFFPYYIHNVLAGL-DDEGRGAIFTY 149
Query: 124 DMAG-CETRKTDFVAGGSAQNMIMGIGESFWQP---------GLSPEQLFEVCSQVVIQA 173
D G CE K GG++ MI I ++ + LS ++ + I A
Sbjct: 150 DPVGHCE--KVKISCGGASMEMIQPILDNVIEKKNMTNAELVDLSIDETVNIVHDCFISA 207
Query: 174 CERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ER ++G G ++ D + +++ R D
Sbjct: 208 AERQIQTGDGVVFKIITKDGIETKRVGLRRD 238
>gi|71663121|ref|XP_818557.1| proteasome beta-1 subunit [Trypanosoma cruzi strain CL Brener]
gi|70883816|gb|EAN96706.1| proteasome beta-1 subunit, putative [Trypanosoma cruzi]
Length = 284
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 85/198 (42%), Gaps = 15/198 (7%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G I+A+A K + D G + + NK+ +++ +Y G AD AE+
Sbjct: 54 GTTIMAVAFKGGVVLAADSRTSTGTYVVNRASNKLTKLAEKIYCCRSGSAADTQALAEQ- 112
Query: 66 TLRTANYVASEQS----PISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLS 121
TANY+ S ++ P++ T A I Y K I I+AG+ P +G S
Sbjct: 113 ---TANYLESYETDTSKPVNVTTAANIFKKLCYMNKWNISAGI--IVAGYDPLNGGSVYS 167
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
C K D+ GGS + ++ ++ G+S E+ C + V A RD SG
Sbjct: 168 IPSGGSC--VKLDYALGGSGSIFLYSFFDANYKTGMSKEECVCFCQRAVAHAYSRDGSSG 225
Query: 182 ---WGATVYVVEPDKVTI 196
++ EP+ +TI
Sbjct: 226 GLIRTIALHQGEPEDMTI 243
>gi|327262119|ref|XP_003215873.1| PREDICTED: proteasome subunit beta type-1-like [Anolis
carolinensis]
Length = 239
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 96/210 (45%), Gaps = 14/210 (6%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN-KVHQMSPHLYLINPGLCADGMQFAE 63
+GG I+A+AG++ F+I + D+ + ++ K ++++ + G D + +
Sbjct: 34 NGGTILAIAGED-FSIVASDTRLSEDYAVHSRDSPKCYKLTDTTVIGCSGFHGDCLTLTK 92
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y S +S AA+ S LY+R+ P ++ II G + G+ + +
Sbjct: 93 IIEARLKMYKHSNNKIMSAGAIAAMLSTILYSRRFF-PYYVYNIIGGL-DEEGKGAVYSF 150
Query: 124 DMAGCETRKTDFVAGGSAQNMI-------MGIG--ESFWQPGLSPEQLFEVCSQVVIQAC 174
D G R T F AGGSA M+ +G+ ++ Q L+ E+ ++ V I A
Sbjct: 151 DPVGSYQRDT-FKAGGSASAMLQPLLDNQVGLKNMQNVQQVSLTLEKALQLVKDVFISAA 209
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G + ++ D + + R D
Sbjct: 210 ERDVYTGDALKICIITKDGIKEETVPLRRD 239
>gi|385806007|ref|YP_005842405.1| proteasome subunit Beta [Fervidicoccus fontis Kam940]
gi|383795870|gb|AFH42953.1| proteasome subunit Beta [Fervidicoccus fontis Kam940]
Length = 211
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 80/178 (44%), Gaps = 5/178 (2%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G V + K+ + D G F K+ +++ + L GL AD A+ +
Sbjct: 19 GTTTVGLIAKDAVILAADRRATAGTFIAHRKTRKILKITDKMALTTAGLVADAQVLADWL 78
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
+ +++ P++ A + S LY KL P ++ I+ G+ D+ S LD+
Sbjct: 79 NTQMNYLTITKKQPVTVREAAHLLSLLLYRYKL-FPFYVQLILGGY--DTAPRLFS-LDL 134
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWG 183
G + + + GS + +G+ E ++ +SPE+ ++ + V A +RD+ +G G
Sbjct: 135 YGSLVEE-KYTSTGSGSPIAIGVLEDGYRENMSPEEARKLAVKAVQMALKRDSATGDG 191
>gi|390369126|ref|XP_001197881.2| PREDICTED: proteasome subunit beta type-3-like
[Strongylocentrotus purpuratus]
Length = 99
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 44/93 (47%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G A+VAM GK+C I D T++ K+ M P LYL GL D + +
Sbjct: 7 NGSAVVAMIGKDCVGIASDRRFGVQAQTVSMNAQKIFTMGPRLYLGLSGLATDITTVSNR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARK 97
+ R Y E + P+TF ++ S LY R+
Sbjct: 67 LKFRLNLYTLRENRDVKPETFMSMVSNLLYERR 99
>gi|290562593|gb|ADD38692.1| Proteasome subunit beta type-1 [Lepeophtheirus salmonis]
Length = 238
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 86/211 (40%), Gaps = 14/211 (6%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG + +AGK+ I D L ++ KV + + L G D + F
Sbjct: 32 DNGGTTIGIAGKDFVVIASDTRLCNSYDILSRDVPKVFDLGGNSVLGASGCWCDVLTFIR 91
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
R NY + +S A + S LY RK P +I+ ++AG D G + T
Sbjct: 92 VAESRIKNYNYTHGKEMSTSALAQMLSITLY-RKRFFPYYIHNVLAGL-DDEGRGAIFTY 149
Query: 124 DMAG-CETRKTDFVAGGSAQNMIMGIGESFWQP---------GLSPEQLFEVCSQVVIQA 173
D G CE K GG++ MI I ++ + LS ++ + I A
Sbjct: 150 DPVGHCE--KVKISCGGASMEMIQPILDNVIEKKNMTNAELVDLSIDETVNIVHDCFISA 207
Query: 174 CERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ER ++G G ++ D + +++ R D
Sbjct: 208 AERQIQTGDGVVFKIITKDGIETKRVGLRRD 238
>gi|71666388|ref|XP_820153.1| proteasome beta-1 subunit [Trypanosoma cruzi strain CL Brener]
gi|70885487|gb|EAN98302.1| proteasome beta-1 subunit, putative [Trypanosoma cruzi]
Length = 284
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 84/198 (42%), Gaps = 15/198 (7%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G I+A++ K + D G + + NK+ ++S +Y G AD AE+
Sbjct: 54 GTTIMAVSFKGGVVLAADSRTSTGTYVVNRASNKLTKLSEKIYCCRSGSAADTQALAEQ- 112
Query: 66 TLRTANYVASEQ----SPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLS 121
TANY+ S + P++ T A I Y K I I+AG+ P +G S
Sbjct: 113 ---TANYLESYEIDTSKPVNVTTAANIFKKLCYMNKWNISAGI--IVAGYDPLNGGSVYS 167
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
C K D+ GGS + ++ ++ G+S E+ C + V A RD SG
Sbjct: 168 IPSGGSC--VKLDYALGGSGSIFLYSFFDANYKTGMSKEECVCFCQRAVAHAYSRDGSSG 225
Query: 182 ---WGATVYVVEPDKVTI 196
++ EP+ +TI
Sbjct: 226 GLIRTIALHQGEPEDMTI 243
>gi|121543861|gb|ABM55595.1| putative proteasome subunit, beta type, 1 [Maconellicoccus
hirsutus]
Length = 229
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 89/200 (44%), Gaps = 12/200 (6%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG+IVA+ G + I D L G +++K+ ++S L G +D + F
Sbjct: 23 DNGGSIVAVGGDDFVIIASDTRLSTGYSIYTRHQSKIFKLSKISALACAGCWSDVLTFTR 82
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y+ +S A + S +Y ++ P +++ I+ G D G ++ +
Sbjct: 83 LINARMQMYLHEHNKEMSTPALAQMLSTMMYHKRFF-PYYVSNILGGLEKD-GSGWIYSY 140
Query: 124 DMAGCETRKTDFVAGGSAQNMI-------MGIG--ESFWQPGLSPEQLFEVCSQVVIQAC 174
D G R + F AGGS+ ++ +G E+ +S E+ V V I A
Sbjct: 141 DPIGNMER-SKFRAGGSSGALLQPLLDNQLGFANMENVESRSISLEKALAVVRDVFISAA 199
Query: 175 ERDTKSGWGATVYVVEPDKV 194
ERD +G V V+ D++
Sbjct: 200 ERDIYTGDKIHVTVITKDEI 219
>gi|45360639|ref|NP_988993.1| proteasome beta 1 subunit [Xenopus (Silurana) tropicalis]
gi|38174388|gb|AAH61284.1| proteasome (prosome, macropain) subunit, beta type, 1 [Xenopus
(Silurana) tropicalis]
gi|89272031|emb|CAJ83174.1| proteasome (prosome macropain) subunit beta type 1 [Xenopus
(Silurana) tropicalis]
Length = 239
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 93/209 (44%), Gaps = 12/209 (5%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG ++A+AG + + D L +G + K ++++ + + G AD + +
Sbjct: 34 NGGTVLALAGDDFALVASDTRLSEGYSIHSRNTPKCYKLTDNTVIGCTGFHADCLTLTKI 93
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y S ++ AA+ S LY+R+ P ++ II G + G+ + + D
Sbjct: 94 IEARLKMYKHSNNKTMTSGAIAAMLSTILYSRRFF-PYYVYNIIGGL-DEEGKGAVYSFD 151
Query: 125 MAGCETRKTDFVAGGSAQNMIM-----GIG----ESFWQPGLSPEQLFEVCSQVVIQACE 175
G R + AGGSA M+ IG ++ Q L+ E+ ++ V I A E
Sbjct: 152 PVGSYQRDA-YKAGGSASAMLQPLLDNQIGYKNMQNVEQLPLTLEKALKLIKDVFISAAE 210
Query: 176 RDTKSGWGATVYVVEPDKVTIRKIATRMD 204
RD +G + +V D + ++ R D
Sbjct: 211 RDVYTGDALHISIVTKDGIREESVSLRKD 239
>gi|222431909|gb|ACM50881.1| 20S proteasome beta subunit F1 [Ulva fasciata]
Length = 241
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 92/212 (43%), Gaps = 20/212 (9%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
N+GG +VA+AG + I L G ++ + +HQ+S L + G D +
Sbjct: 31 NNGGTVVAVAGSDYCIIAGSTRLSTGFSVLSREHSSLHQLSRMCVLASSGFEGDRATLTK 90
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPD-SGEVFLST 122
++ R Y S + PI + A S ELY ++ P + I+AG D +G V+ +
Sbjct: 91 RLKSRAVMYQHSHKRPIGCEAMAQALSNELYGKRFF-PFYTFNILAGLDADGTGAVY--S 147
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGESFWQP-------------GLSPEQLFEVCSQV 169
D G R T + A G+ +++ + ++ + L E+ ++
Sbjct: 148 YDAVGSYER-TGYAAQGTGNDLVQPLLDNQLRAASPLVLPKKPSVTALPVERALDIVRDA 206
Query: 170 VIQACERDTKSGWGATVYVVEPDKVTIRKIAT 201
+ A ERD +G V+++ D IRK +T
Sbjct: 207 LTAAGERDIYTGDSIEVWIMTKDG--IRKEST 236
>gi|407844517|gb|EKG01987.1| proteasome beta-1 subunit, putative [Trypanosoma cruzi]
Length = 284
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 84/198 (42%), Gaps = 15/198 (7%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G I+A+A K + D G + + NK+ +++ +Y G AD AE+
Sbjct: 54 GTTIMAVAFKGGVVLAADSRTSTGTYVVNRASNKLTKLAEKIYCCRSGSAADTQALAEQ- 112
Query: 66 TLRTANYVASEQ----SPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLS 121
TANY+ S + P++ T A I Y K I I+AG+ P +G S
Sbjct: 113 ---TANYLESYEIDTSKPVNVTTAANIFKKLCYMNKWNISAGI--IVAGYDPLNGGSVYS 167
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
C K D+ GGS + ++ ++ G+S E+ C + V A RD SG
Sbjct: 168 IPSGGSC--VKLDYALGGSGSIFLYSFFDANYKTGMSKEECVCFCQRAVAHAYSRDGSSG 225
Query: 182 ---WGATVYVVEPDKVTI 196
++ EP+ +TI
Sbjct: 226 GLIRTIALHQGEPEDMTI 243
>gi|162605862|ref|XP_001713446.1| 26S proteasome SU [Guillardia theta]
gi|13794378|gb|AAK39755.1|AF083031_112 26S proteasome SU [Guillardia theta]
Length = 200
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 87/198 (43%), Gaps = 2/198 (1%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
GG +VA+ GK+ I D + K+ ++ + + GL D F E +
Sbjct: 5 GGCVVAILGKDSLCIASDSENGSVSYLTEFKTQKIFKLHEDIIIGIVGLLGDIYGFKEIL 64
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
+ EQ + P ++ S LY ++ +P + ++AGF ++G+ FL T+D
Sbjct: 65 EYEISIVTKKEQKKMEPIEILSLISTLLYKKRF-NPYLLEILVAGF-TENGKPFLGTVDC 122
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
G + +++ G+ I + + W+PG+ ++L + S+ + R+ S +T
Sbjct: 123 IGAISYISNYACIGNLCENIFPLIQFLWRPGMDLKELIILVSKSMKVGNRRNCYSSKNST 182
Query: 186 VYVVEPDKVTIRKIATRM 203
V + +K+ ++
Sbjct: 183 VMIYNIKYKICKKLILKI 200
>gi|242247122|ref|NP_001156136.1| proteasome subunit beta type-like [Acyrthosiphon pisum]
gi|239799300|dbj|BAH70578.1| ACYPI003417 [Acyrthosiphon pisum]
Length = 222
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 95/207 (45%), Gaps = 10/207 (4%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG+IVA++GK+ + D L +G ++K+ Q+S L G D +
Sbjct: 20 SNGGSIVAISGKDFAIVASDTRLSEGYMIYTRKQSKLFQLSDKSVLGCTGCWCDTLSLTN 79
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ + +Y+ + + P++ A + S LY+R+ P ++ ++AG +GE L +
Sbjct: 80 IIQSQLKSYLYDHNTIMQPNSIAQLLSTLLYSRRFF-PYYVYNVLAGL-DINGEGCLYSY 137
Query: 124 DMAG-CETRKTDFVAGGSAQNMIMG-----IGESFWQPGLSPEQLFEVCSQVVIQACERD 177
D G CE K ++ AGGS+ ++ +G + ++ E+ + A ERD
Sbjct: 138 DPVGHCE--KVNYTAGGSSGVLMQPFLDSWLGNRTAENPVTEEEALSLVKDAFTAAGERD 195
Query: 178 TKSGWGATVYVVEPDKVTIRKIATRMD 204
+G +++ + + + R D
Sbjct: 196 IYTGDEVVYNIIKKNGIKTGVVQLRKD 222
>gi|225703280|gb|ACO07486.1| Proteasome subunit beta type 1-A [Oncorhynchus mykiss]
Length = 237
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 89/209 (42%), Gaps = 12/209 (5%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG ++A+AG++ + D L +G + K ++++ + G D + E
Sbjct: 32 NGGTVLAVAGEDFAIVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDCLTLTEI 91
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y S ++ AA+ S LY R+ P ++ II G + G+ + + D
Sbjct: 92 IDARLKMYKHSNNKCMTSGAIAAMLSTILYGRRFF-PYYVYNIIGGL-DEEGKGAVYSFD 149
Query: 125 MAGCETRKTDFVAGGSAQNMIM-----GIG----ESFWQPGLSPEQLFEVCSQVVIQACE 175
G R T + AGGSA M+ IG E LS E+ ++ V I A E
Sbjct: 150 PVGSYQRDT-YKAGGSASAMLQPLLDNQIGFKNMEGVQHLPLSQEKAVQLVKDVFISAAE 208
Query: 176 RDTKSGWGATVYVVEPDKVTIRKIATRMD 204
RD +G + +V D + + R D
Sbjct: 209 RDVYTGDALRICIVTKDGIKEETVPLRKD 237
>gi|225716016|gb|ACO13854.1| Proteasome subunit beta type-1-A [Esox lucius]
Length = 237
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 88/209 (42%), Gaps = 12/209 (5%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG ++A+AG++ + D L +G + K ++++ + G D + +
Sbjct: 32 NGGTVLAVAGEDFAIVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDCLTLTKI 91
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y S ++ AA+ S LY R+ P ++ II G + G + + D
Sbjct: 92 IDARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFF-PYYVYNIIGGL-DEEGRGAVYSFD 149
Query: 125 MAGCETRKTDFVAGGSAQNMIM-----GIG----ESFWQPGLSPEQLFEVCSQVVIQACE 175
G R T + AGGSA M+ IG E LS E+ ++ V I A E
Sbjct: 150 PVGSYQRDT-YKAGGSASAMLQPLLDNQIGFKNMEGVQHLPLSQEKALQLVKDVFISAAE 208
Query: 176 RDTKSGWGATVYVVEPDKVTIRKIATRMD 204
RD +G + +V D + + R D
Sbjct: 209 RDVYTGDALRICIVTKDGIKEENVPLRKD 237
>gi|126465830|ref|YP_001040939.1| 20S proteasome subunits A/B [Staphylothermus marinus F1]
gi|302595722|sp|A3DN21.1|PSB1_STAMF RecName: Full=Proteasome subunit beta 1; AltName: Full=20S
proteasome beta subunit 1; AltName: Full=Proteasome core
protein PsmB 1; Flags: Precursor
gi|126014653|gb|ABN70031.1| 20S proteasome, A and B subunits [Staphylothermus marinus F1]
Length = 213
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 86/198 (43%), Gaps = 4/198 (2%)
Query: 7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMT 66
G ++ + N I + L + +++ KVH ++ H+ + GL D +
Sbjct: 18 GTVLGIKAVNGVVIAGEKRLTYDGYVLSKNTRKVHPITKHVGIGFAGLVGDAQFIIRALR 77
Query: 67 LRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMA 126
+ NY I A I S LY+ KL +PL ++ GF ++++ LD
Sbjct: 78 MEAENYELQLGREIRVRGLAKILSLILYSYKL-APLMTEVVVGGFDEKGPQIYV--LDPV 134
Query: 127 GCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATV 186
G + +VA GS + +GI E ++ + ++ ++ + +A ERD SG G V
Sbjct: 135 GSLI-EDKYVALGSGGPIALGIIEKEYREDIDVDEAEKLAVSAIREAIERDAVSGDGVDV 193
Query: 187 YVVEPDKVTIRKIATRMD 204
+ + ++R+ R +
Sbjct: 194 LRITEEGYSLREYMFRRE 211
>gi|350539311|ref|NP_001232140.1| putative proteasome subunit beta type 1 [Taeniopygia guttata]
gi|197129774|gb|ACH46272.1| putative proteasome subunit beta type 1 [Taeniopygia guttata]
gi|197129776|gb|ACH46274.1| putative proteasome subunit beta type 1 [Taeniopygia guttata]
gi|197129778|gb|ACH46276.1| putative proteasome subunit beta type 1 [Taeniopygia guttata]
gi|197129780|gb|ACH46278.1| putative proteasome subunit beta type 1 [Taeniopygia guttata]
gi|197129781|gb|ACH46279.1| putative proteasome subunit beta type 1 [Taeniopygia guttata]
gi|197129782|gb|ACH46280.1| putative proteasome subunit beta type 1 [Taeniopygia guttata]
gi|197129783|gb|ACH46281.1| putative proteasome subunit beta type 1 [Taeniopygia guttata]
Length = 238
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 92/209 (44%), Gaps = 12/209 (5%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG ++A+AG++ + D L +G + K ++++ + G D + +
Sbjct: 33 NGGTVLAIAGEDFCIVASDTRLSEGYSIHSRDSPKCYKLTERTVIGCTGFHGDCLTLTKI 92
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y S ++ AA+ S LY+R+ P ++ II G + G+ + + D
Sbjct: 93 IEARLKMYKHSNNKTMTTGAIAAMLSTILYSRRFF-PYYVYNIIGGL-DEEGKGAVYSFD 150
Query: 125 MAGCETRKTDFVAGGSAQNMIM-----GIG----ESFWQPGLSPEQLFEVCSQVVIQACE 175
G R +F AGGSA M+ IG ++ L+ E+ ++ V I A E
Sbjct: 151 PVGSYERD-NFKAGGSASAMLQPLLDNQIGFKNMQNVEHVPLTLEKALQLVKDVFISAAE 209
Query: 176 RDTKSGWGATVYVVEPDKVTIRKIATRMD 204
RD +G + +V D + + I R D
Sbjct: 210 RDVYTGDALKICIVTKDGIKEQTIQLRKD 238
>gi|357605013|gb|EHJ64427.1| proteasome subunit beta 1 [Danaus plexippus]
Length = 232
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 88/210 (41%), Gaps = 12/210 (5%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG++VA+AG + IG D L G + K+ ++S L G D +
Sbjct: 26 DNGGSVVAIAGDDYAVIGADTRLSTGFSIYTREQKKLFKLSDRTVLGATGCWCDTLTLTR 85
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y +S A + S LY ++ P +I+ ++AG + S
Sbjct: 86 LLQARMQMYEHEHNKAMSTPAVAQMLSTMLYYKRFF-PYYISNVLAGLDAEGKGCVYSYD 144
Query: 124 DMAGCETRKTDFVAGGSAQNMIM-----GIG----ESFWQPGLSPEQLFEVCSQVVIQAC 174
+ CE ++++ AGGSA + IG ++ + LS E+ + V I A
Sbjct: 145 PIGHCE--RSNYRAGGSAGAQLQPLLDNQIGLKNMQNVTEAPLSREKALALLKDVFISAA 202
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G + ++ + + K R D
Sbjct: 203 ERDIYTGDSIYILIITANGIQEEKFELRKD 232
>gi|197129784|gb|ACH46282.1| putative proteasome subunit beta type 1 [Taeniopygia guttata]
Length = 238
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 92/209 (44%), Gaps = 12/209 (5%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG ++A+AG++ + D L +G + K ++++ + G D + +
Sbjct: 33 NGGTVLAIAGEDFCIVASDTRLSEGYSIHSRDSPKCYKLTERTVIGCTGFHGDCLTLTKI 92
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y S ++ AA+ S LY+R+ P ++ II G + G+ + + D
Sbjct: 93 IEARLKMYKHSNNKTMTTGAIAAMLSTILYSRRFF-PYYVYNIIGGL-DEEGKGAVYSFD 150
Query: 125 MAGCETRKTDFVAGGSAQNMIM-----GIG----ESFWQPGLSPEQLFEVCSQVVIQACE 175
G R +F AGGSA M+ IG ++ L+ E+ ++ V I A E
Sbjct: 151 PVGSYERD-NFKAGGSASAMLQPLLDNQIGFKNMQNVEHVPLTLEKALQLVKDVFISAAE 209
Query: 176 RDTKSGWGATVYVVEPDKVTIRKIATRMD 204
RD +G + +V D + + I R D
Sbjct: 210 RDVYTGDALKICIVTKDGIKEQTIQLRKD 238
>gi|197129773|gb|ACH46271.1| putative proteasome subunit beta type 1 [Taeniopygia guttata]
Length = 238
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 92/209 (44%), Gaps = 12/209 (5%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG ++A+AG++ + D L +G + K ++++ + G D + +
Sbjct: 33 NGGTVLAIAGEDFCIVASDTRLSEGYSIHSRDSPKCYKLTERTVIGCTGFHGDCLTLTKI 92
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y S ++ AA+ S LY+R+ P ++ II G + G+ + + D
Sbjct: 93 IEARLKMYKHSNNKTMTTGAIAAMLSTILYSRRFF-PYYVYNIIGGL-DEEGKGAVYSFD 150
Query: 125 MAGCETRKTDFVAGGSAQNMIM-----GIG----ESFWQPGLSPEQLFEVCSQVVIQACE 175
G R +F AGGSA M+ IG ++ L+ E+ ++ V I A E
Sbjct: 151 PVGSYERD-NFKAGGSASAMLQPLLDNQIGFKNMQNVEHVPLTLEKALQLVKDVFISAAE 209
Query: 176 RDTKSGWGATVYVVEPDKVTIRKIATRMD 204
RD +G + +V D + + I R D
Sbjct: 210 RDVYTGDALKICIVTKDGIKEQTIQLRKD 238
>gi|383853088|ref|XP_003702056.1| PREDICTED: proteasome subunit beta type-1-like [Megachile
rotundata]
Length = 236
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 89/211 (42%), Gaps = 14/211 (6%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG+++A+AG + I D L G + K+ +S L G D +
Sbjct: 30 DNGGSVIALAGDDFCVIAADTRLSVGFSIYTREQQKLFPLSSKTVLGCSGCWCDTLTLTR 89
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
++ R Y Q ++ A + S LY R+ P +I+ II G D G + +
Sbjct: 90 FLSARMQMYEHEHQKEMATPAVAQMLSTMLYYRRFF-PYYISNIIGGL-DDKGHGCVYSY 147
Query: 124 DMAG-CETRKTDFVAGGSAQNMIMGIGESFW----QPGLSP-----EQLFEVCSQVVIQA 173
D G CE K + AGGSA ++ + ++ Q G+ P E+ V V I A
Sbjct: 148 DPIGHCEAAK--YRAGGSAGALLQPLLDNQIGYKNQEGVEPVPLTQEKAIAVIKDVFISA 205
Query: 174 CERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G ++ ++ D + R D
Sbjct: 206 AERDIYTGDSISIKIITKDGIKDESFELRKD 236
>gi|340053992|emb|CCC48286.1| putative proteasome beta-1 subunit [Trypanosoma vivax Y486]
Length = 282
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 82/210 (39%), Gaps = 31/210 (14%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G I+A++ ++ + D G + + NK+ ++ +Y G AD AE
Sbjct: 54 GTTIMAVSYRDGVVLAADSRTSTGAYVVNRASNKLTMLTKKIYCCRSGSAADTQALAE-- 111
Query: 66 TLRTANYVASEQSPISPD----TFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLS 121
RTANY+ S + I+ + T A I Y K I I+AG+ +G S
Sbjct: 112 --RTANYLESHGTDIAREINVATAANIFKKLCYMNKWNITAGI--IVAGYDSLNGGSVYS 167
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
C K D+ GGS + ++ ++PG++ E+ C V A RD SG
Sbjct: 168 IPSGGSCV--KLDYALGGSGSIFLYSFFDANYKPGMTKEECIRFCQTAVAHAYSRDGSSG 225
Query: 182 -------------------WGATVYVVEPD 192
W AT Y +E D
Sbjct: 226 GLIRTIALHQGEPEDLTVPWTATPYCMEKD 255
>gi|405957660|gb|EKC23857.1| Proteasome subunit beta type-1 [Crassostrea gigas]
Length = 229
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 88/209 (42%), Gaps = 12/209 (5%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG +A+AG++ +G D L QG K ++++ L G D + +
Sbjct: 24 NGGTCLAIAGEDFVVVGSDTRLSQGFSIFTRDLPKTYKLTTSTVLGACGFHGDVLTLTKV 83
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R + ++ AA+ S LY R+ P ++ +IAG + G+ + + D
Sbjct: 84 LNARLKMFEHEHHKKMTTSEIAAMLSTMLYHRRFF-PYYVYNLIAGL-DEEGKGVVYSFD 141
Query: 125 MAGCETRKTDFVAGGSAQNMIM-----GIG----ESFWQPGLSPEQLFEVCSQVVIQACE 175
G + A GSA M+ IG ++ + LS E++ + V I A E
Sbjct: 142 PVGSYG-SDGYRARGSAAAMLQPLLDNQIGLKNQQNVQRVSLSKEKVVNLVKDVFISAAE 200
Query: 176 RDTKSGWGATVYVVEPDKVTIRKIATRMD 204
RD +G V+V+ D T + R D
Sbjct: 201 RDIYTGDAVVVHVITKDGTTTERFPLRRD 229
>gi|395827082|ref|XP_003786737.1| PREDICTED: proteasome subunit beta type-3 [Otolemur garnettii]
Length = 133
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 142 QNMIMGIG-ESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIA 200
+N++ +G + + G PE LFE SQ ++ A +RD SG G V+++E DK+T R +
Sbjct: 70 RNILQAVGLKIHLRVGEDPEHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKITTRTLK 129
Query: 201 TRMD 204
RMD
Sbjct: 130 ARMD 133
Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCAD 57
MS N GGA++AM GKNC AI D +Q +++ K+ M LY+ GL D
Sbjct: 4 MSYN-GGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQ-KIFPMGDRLYIGLAGLATD 59
>gi|56118302|ref|NP_001007906.1| proteasome subunit beta type-1 [Gallus gallus]
gi|38680347|gb|AAR26544.1| proteasome subunit beta-type [Gallus gallus]
Length = 237
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 91/209 (43%), Gaps = 12/209 (5%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG ++A+AG++ + D L +G + K ++++ + G D + +
Sbjct: 32 NGGTVLAIAGEDFCIVASDTRLSEGYAIHSRDSPKCYRLTEQTVIGCSGFHGDCLTLTKI 91
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y S ++ AA+ S LY+R+ P ++ II G + G+ + + D
Sbjct: 92 IEARLKMYKHSNNKTMTTGAIAAMLSTILYSRRFF-PYYVYNIIGGL-DEEGKGAVYSFD 149
Query: 125 MAGCETRKTDFVAGGSAQNMIM-----GIG----ESFWQPGLSPEQLFEVCSQVVIQACE 175
G R + F AGGSA M+ IG ++ L+ E+ ++ V I A E
Sbjct: 150 PVGSYQRDS-FKAGGSASAMLQPLLDNQIGFKNMQNVEHVPLTLEKALQLVKDVFISAAE 208
Query: 176 RDTKSGWGATVYVVEPDKVTIRKIATRMD 204
RD +G + VV D + I R D
Sbjct: 209 RDVYTGDALKICVVTKDGIKEETIQLRKD 237
>gi|387017846|gb|AFJ51041.1| Proteasome subunit beta type-1-like [Crotalus adamanteus]
Length = 239
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 93/210 (44%), Gaps = 14/210 (6%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN-KVHQMSPHLYLINPGLCADGMQFAE 63
+GG I+A+AG++ + D L + D+ I + K ++++ + G D + +
Sbjct: 34 NGGTILAIAGEDFVVVASDTRLSE-DYAIHSRNSPKCYKLTDTTVIGCSGFHGDCLTLTK 92
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y S +S AA+ S LY+R+ P ++ II G + G+ + +
Sbjct: 93 ILEARLKMYKHSNNKIMSSGAIAAMLSTILYSRRFF-PYYVYNIIGGL-DEEGKGAVYSF 150
Query: 124 DMAGCETRKTDFVAGGSAQNMI-------MGIG--ESFWQPGLSPEQLFEVCSQVVIQAC 174
D G R + F AGGSA M+ +G+ + Q LS E+ ++ V I A
Sbjct: 151 DPVGSYQRDS-FKAGGSASAMLQPLLDNQVGLKNMQGVKQLPLSLEKALQLVKDVFISAA 209
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G + V+ D + R D
Sbjct: 210 ERDVYTGDALKICVITKDGIKEESFPLRRD 239
>gi|242023933|ref|XP_002432385.1| proteasome subunit beta type, putative [Pediculus humanus corporis]
gi|212517808|gb|EEB19647.1| proteasome subunit beta type, putative [Pediculus humanus corporis]
Length = 219
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 92/211 (43%), Gaps = 14/211 (6%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG+IVA+AG++ IG D L ++K+ ++S L G D +Q +
Sbjct: 13 DNGGSIVAIAGEDFAVIGSDTRLSSNYSIFTRNQSKLFKLSDTTVLGCSGCWCDTLQLTK 72
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ + Y + + + S LY ++ P + ++AG D G+ + +
Sbjct: 73 VVRAQMQMYFHDNNKVMVTPAVSQMLSTLLYYKRFM-PYLVYNVLAGL-DDQGKGCVYSY 130
Query: 124 DMAG-CETRKTDFVAGGSAQNMIMGI---------GESFWQPGLSPEQLFEVCSQVVIQA 173
D G CE ++ F AGGS+ ++ + E+ + L+ E+ V V I A
Sbjct: 131 DPIGHCE--RSTFRAGGSSGALLQPLLDNQLGYHNMENVKKEQLTLEKALSVLKDVFIAA 188
Query: 174 CERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G +YV++ D + R D
Sbjct: 189 AERDIYTGDSIAIYVIKKDGIKSENFDLRKD 219
>gi|154333595|ref|XP_001563054.1| putative proteasome beta-1 subunit [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134060064|emb|CAM37377.1| putative proteasome beta-1 subunit [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 283
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 82/196 (41%), Gaps = 11/196 (5%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G I+A++ K + D G + + NK+ +++ +Y G AD AE
Sbjct: 54 GTTILAVSYKGGVVLAADSRTSSGTYVVNRASNKLTKLTKKIYCCRSGSAADTQALAE-- 111
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINP--IIAGFYPDSGEVFLSTL 123
R +NY+ S Q+ + + A A+ + + I+ I+AG+ P +G S
Sbjct: 112 --RVSNYLGSYQTDVGTEVNVATAANLFHKMCYMNRWNISAGIIVAGYDPINGGSVYSIP 169
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG-- 181
C K D+ GGS + ++ ++P +S + C + V A RD SG
Sbjct: 170 SGGSCV--KLDYALGGSGSIFLYSFFDANYKPDMSKSECVAFCQRAVAHAFSRDGSSGGL 227
Query: 182 -WGATVYVVEPDKVTI 196
T+ EP+ TI
Sbjct: 228 IRTITLDAGEPEHQTI 243
>gi|221117643|ref|XP_002165958.1| PREDICTED: proteasome subunit beta type-1-A-like [Hydra
magnipapillata]
Length = 226
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 89/208 (42%), Gaps = 12/208 (5%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
GG+++A+AG++ I D L +G + K +Q++ L + G D + + +
Sbjct: 22 GGSLLAIAGEDFAVIASDTRLSEGFLIHSRNIPKTYQLTDTTILGSCGFHGDVLTLTKNI 81
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
R Y +S + A + S LY ++ P + IIAG D G+ + + D
Sbjct: 82 KTRLVMYEHEHFKTMSCSSIAQMLSTTLYYKRFF-PYYTYNIIAGLDSD-GKGAIYSFDP 139
Query: 126 AGCETRKTDFVAGGSAQNMIMG-----IGESFWQPG----LSPEQLFEVCSQVVIQACER 176
G R+T + AGGS M+ IG+ LS E+ E+ V I A ER
Sbjct: 140 VGSYERET-YRAGGSCSAMLQSFLDNQIGQKNLAKKSDIPLSLERCVELIKDVFISAAER 198
Query: 177 DTKSGWGATVYVVEPDKVTIRKIATRMD 204
D ++G G + ++ + R D
Sbjct: 199 DIETGDGVLISIITKEGTKSEVFPLRRD 226
>gi|308807300|ref|XP_003080961.1| PSB1_PETHY Proteasome subunit beta type 1 (ISS) [Ostreococcus
tauri]
gi|116059422|emb|CAL55129.1| PSB1_PETHY Proteasome subunit beta type 1 (ISS) [Ostreococcus
tauri]
Length = 233
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 92/215 (42%), Gaps = 18/215 (8%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
N+GG ++A+AG++ D + G + K+ +MS + + G AD + +
Sbjct: 23 NNGGTVLAVAGESYVICAGDTRMSSGYNILTRKFEKIDKMSGKTLMASAGFAADAVTLKK 82
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPD-SGEVFLST 122
+ R Y + I FA + S LY R+ P + I+AG + G VF T
Sbjct: 83 TLKARCKQYEFQNKREIGCVAFAQMLSNTLYYRRFF-PYYAFNIVAGLDAEGKGAVF--T 139
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGESFWQ-------PG------LSPEQLFEVCSQV 169
D G R T++ GS Q +IM + ++ + P LS ++ ++
Sbjct: 140 YDAVGSYER-TNYSCQGSGQALIMPVLDNQLKTVSPLVLPAASSATPLSEQEAIDLIKDC 198
Query: 170 VIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A ERD +G ++++ + V ++A R D
Sbjct: 199 FATAAERDIYTGDSVELWIMNAEGVRKEEMALRAD 233
>gi|427787323|gb|JAA59113.1| Putative 20s proteasome regulatory subunit beta type psmb1/pre7
[Rhipicephalus pulchellus]
Length = 232
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 91/209 (43%), Gaps = 12/209 (5%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG+IVA+AG + I D L G ++K+ ++S L + G D + F
Sbjct: 27 NGGSIVAVAGDDFAVIASDSRLSSGYHIHTREQSKLFKLSNQCVLGSTGCWCDILTFTRF 86
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y+ +S A + LY ++ P +I+ I+AG + G+ + D
Sbjct: 87 LEARMKMYLHEHHKLMSTPAVAQLIVTMLYNKRFF-PYYISNILAGL-DEEGKGCIYCYD 144
Query: 125 MAGCETRKTDFVAGGSAQNMIM-----GIG----ESFWQPGLSPEQLFEVCSQVVIQACE 175
G + + + AGGS+ ++ IG E+ + E+ + V I A E
Sbjct: 145 PVG-HSERVQYRAGGSSSALLQPLLDNQIGFKNMENVKPEPPTRERAVNIIKDVFISAAE 203
Query: 176 RDTKSGWGATVYVVEPDKVTIRKIATRMD 204
RD +G +++++ D + K+ R D
Sbjct: 204 RDIYTGDSVIIHIIDKDGIKEDKMPLRRD 232
>gi|17554384|ref|NP_498806.1| Protein PBS-6 [Caenorhabditis elegans]
gi|21903455|sp|P34286.2|PSB1_CAEEL RecName: Full=Proteasome subunit beta type-1; AltName:
Full=Proteasome subunit beta 6
gi|12276021|gb|AAG50223.1|AF303265_1 proteasome component C5 [Caenorhabditis elegans]
gi|351020646|emb|CCD62635.1| Protein PBS-6 [Caenorhabditis elegans]
Length = 258
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 94/212 (44%), Gaps = 15/212 (7%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYE-NKVHQMSPHLYLINPGLCADGMQFAE 63
+GG+ A++G+N + D + Q D I + K+ ++ ++ L G D +Q +
Sbjct: 50 EGGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKK 109
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y +S +S D A + S LY R+ P + I+AG + G+ + +
Sbjct: 110 VLQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFF-PYYTGAILAGI-DEHGKGAVFSY 167
Query: 124 DMAGCETRKTDFVAGGSAQNMIM----------GIGESFWQPGLSPEQLFEVCSQVVIQA 173
D GC + + A G+A+ MI+ + E + +P L+ ++ + A
Sbjct: 168 DPIGC-IERLGYSASGAAEPMIIPFLDCQIGHVTLSEGYERPELTLDRAISLMKDSFRGA 226
Query: 174 CERDTKSGWGATVYVVEPDK-VTIRKIATRMD 204
ER+ +G + + E K V ++ + R D
Sbjct: 227 AEREISTGDKIHLVIAEAGKPVVVKFLPLRED 258
>gi|383320533|ref|YP_005381374.1| proteasome endopeptidase complex, archaeal, beta subunit
[Methanocella conradii HZ254]
gi|379321903|gb|AFD00856.1| proteasome endopeptidase complex, archaeal, beta subunit
[Methanocella conradii HZ254]
Length = 207
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/191 (20%), Positives = 80/191 (41%), Gaps = 3/191 (1%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G V + N + G F + K+++++ ++ + G DG + A +
Sbjct: 8 GTTTVGIICNNGVVFATERRATMGTFIASRDAQKIYKLTDNIAMTIAGSVGDGQRLARIL 67
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
+ + P+S + + + S L K P ++ +I G ++ +LD
Sbjct: 68 QVEAKLFELRRHGPMSINALSMLLSNILAETKYM-PFYVQVLIGGVDKSGPRIY--SLDP 124
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
G + F + GS + G+ E ++P +S EQ E+ ++ + A +RD+ SG G
Sbjct: 125 LGGRIEEVKFSSTGSGSPIAYGVLEDRYKPDISVEQGVELAAKALESAMKRDSASGNGMQ 184
Query: 186 VYVVEPDKVTI 196
V+ +K I
Sbjct: 185 FAVITHEKFEI 195
>gi|392332285|ref|XP_001053961.3| PREDICTED: uncharacterized protein LOC363748 [Rattus norvegicus]
gi|392351945|ref|XP_344007.5| PREDICTED: uncharacterized protein LOC363748 [Rattus norvegicus]
Length = 275
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
+LD+ GC DFV G+ + G+ ES + PE+L E SQ ++ A + D +
Sbjct: 199 SLDLIGCPMMTDDFVVSGTCSEQMYGMCES----SMDPERLCETISQAMLNAVDHD--AC 252
Query: 182 WGATVYVVEPDKVTIRKIATRMD 204
G V++++ DK+T R + RMD
Sbjct: 253 MGVIVHIIKKDKITTRTLKARMD 275
>gi|126311312|ref|XP_001381658.1| PREDICTED: proteasome subunit beta type-1-like [Monodelphis
domestica]
Length = 244
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 94/210 (44%), Gaps = 14/210 (6%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN-KVHQMSPHLYLINPGLCADGMQFAE 63
+GG ++A+AG++ + D L +G F+I ++ K ++++ + G D + +
Sbjct: 39 NGGTVLAIAGEDFSIVASDTRLSEG-FSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 97
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y S ++ AA+ S LY+R+ P ++ II G + G+ + +
Sbjct: 98 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFF-PYYVYNIIGGL-DEEGKGAVYSF 155
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGI---------GESFWQPGLSPEQLFEVCSQVVIQAC 174
D G R + F AGGSA M+ + ++ LS E+ ++ V I A
Sbjct: 156 DPVGSYQRDS-FKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLERAMQLVKDVFISAA 214
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G + +V D + I R D
Sbjct: 215 ERDVYTGDSLKICIVTKDGIKEETIPLRKD 244
>gi|449020004|dbj|BAM83406.1| 20S core proteasome subunit beta 6 [Cyanidioschyzon merolae strain
10D]
Length = 244
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 89/216 (41%), Gaps = 17/216 (7%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYE-NKVHQMSPHLYLINPGLCADGMQF 61
+++GG ++A+AG++ + D L G F+I K+ Q++ L + G+ AD
Sbjct: 32 VDNGGTVLALAGRDYAIVAADTRLSVG-FSIPSRNFTKIVQLTDQAVLASAGMGADRQYL 90
Query: 62 AEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLS 121
+ + R Y Q +S A + S LY+R+ P++ ++ G ++GE F+
Sbjct: 91 HKILRSRLEIYRYQHQKEMSLGAIAQLLSNTLYSRRFF-PIYAFNVLGGIDANTGEGFVF 149
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGI------GESFWQ-------PGLSPEQLFEVCSQ 168
D G K V GS Q ++ + G + LS + E+
Sbjct: 150 GYDAIGS-FEKVKVVCSGSGQTLVQPVLDQQLAGRQKYDVPDDQRMASLSLAEAIELTRD 208
Query: 169 VVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
V A ERD +G +Y V V + R D
Sbjct: 209 VFNSAAERDILTGDALELYAVTASGVRCERFELRRD 244
>gi|154150927|ref|YP_001404545.1| proteasome endopeptidase complex protein [Methanoregula boonei 6A8]
gi|302595832|sp|A7I841.1|PSB_METB6 RecName: Full=Proteasome subunit beta; AltName: Full=20S proteasome
beta subunit; AltName: Full=Proteasome core protein
PsmB; Flags: Precursor
gi|153999479|gb|ABS55902.1| Proteasome endopeptidase complex [Methanoregula boonei 6A8]
Length = 213
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 71/156 (45%), Gaps = 3/156 (1%)
Query: 38 NKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARK 97
KV+Q++ + + G D Q A +T+ Y I+ + + S L +
Sbjct: 43 KKVYQIADRIGMTIAGGVGDAQQLARIITVECNLYQIRRSREITVGAASTLLSNYLNQNR 102
Query: 98 LTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGL 157
P ++ ++ G V+ ++D G T++ D V+ GS M G+ E ++PG+
Sbjct: 103 YF-PYYVQLLVGGIDDHGPSVY--SVDAMGGATKEEDIVSTGSGSPMAYGVLEDRYRPGM 159
Query: 158 SPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDK 193
+ ++ E+ + + A +RD SG G V V+ D+
Sbjct: 160 NEDEAVELAVRALRSAMKRDAGSGEGIHVVVITKDR 195
>gi|225704042|gb|ACO07867.1| Proteasome subunit beta type 1-A [Oncorhynchus mykiss]
Length = 237
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 89/209 (42%), Gaps = 12/209 (5%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG ++A+AG++ + D L +G + K ++++ + G D + +
Sbjct: 32 NGGTVLAVAGEDFAIVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDCLTLTKI 91
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y S ++ AA+ S LY R+ P ++ II G + G+ + + D
Sbjct: 92 IDARLKMYKHSNNKCMTSGAIAAMLSTILYGRRFF-PYYVYNIIGGL-DEEGKGAVYSFD 149
Query: 125 MAGCETRKTDFVAGGSAQNMIM-----GIG----ESFWQPGLSPEQLFEVCSQVVIQACE 175
G R T + AGGSA M+ IG E LS E+ ++ V I A E
Sbjct: 150 PVGSYQRDT-YKAGGSASAMLQPLLDNQIGFKNMEGVQHLPLSQEKAVQLVKDVFISAAE 208
Query: 176 RDTKSGWGATVYVVEPDKVTIRKIATRMD 204
RD +G + +V D + + R D
Sbjct: 209 RDVYTGDALRICIVTKDGIKEETVPLRKD 237
>gi|225705074|gb|ACO08383.1| Proteasome subunit beta type 1-A [Oncorhynchus mykiss]
Length = 237
Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 89/209 (42%), Gaps = 12/209 (5%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG ++A+AG++ + D L +G + K ++++ + G D + +
Sbjct: 32 NGGTVLAVAGEDFAIVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDCLTLTKI 91
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y S ++ AA+ S LY R+ P ++ II G + G+ + + D
Sbjct: 92 IDARLKMYKHSNNKCMTSGAIAAMLSTILYGRRFF-PYYVYNIIGGL-DEEGKGAVYSFD 149
Query: 125 MAGCETRKTDFVAGGSAQNMIM-----GIG----ESFWQPGLSPEQLFEVCSQVVIQACE 175
G R T + AGGSA M+ IG E LS E+ ++ V I A E
Sbjct: 150 PVGSYQRDT-YKAGGSASAMLQPLLDNQIGFKNMEGVQHLPLSQEKAVQLVKDVFISAAE 208
Query: 176 RDTKSGWGATVYVVEPDKVTIRKIATRMD 204
RD +G + +V D + + R D
Sbjct: 209 RDVYTGDALRICIVTKDGIKEETVPLRKD 237
>gi|124028413|ref|YP_001013733.1| proteasome beta precursor [Hyperthermus butylicus DSM 5456]
gi|302595715|sp|A2BN27.1|PSB2_HYPBU RecName: Full=Proteasome subunit beta 2; AltName: Full=20S
proteasome beta subunit 2; AltName: Full=Proteasome core
protein PsmB 2; Flags: Precursor
gi|123979107|gb|ABM81388.1| proteasome beta precursor [Hyperthermus butylicus DSM 5456]
Length = 212
Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 79/187 (42%), Gaps = 5/187 (2%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G V + ++ + D G F + K+ +++ ++ + GL AD AE +
Sbjct: 15 GTTTVGIVFRDFVVLAADRRATAGYFVAHKRTKKIIKITDYMAMTTAGLVADAQMLAEWL 74
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
T Y + +S A S L++ K P + ++ G+ + L +D
Sbjct: 75 ANHTHYYEIVNKRRMSIHAAAQYLSIILHSAKF-YPYIVQLLLGGY---DTQPRLYNIDW 130
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
G T + +VA GS +G+ E + P LS E+ E+ + V + RDT +G G
Sbjct: 131 FGSVTEE-KYVATGSGSPTAIGVIEDQYSPNLSMEEAVELAKRAVASSIRRDTFTGNGVD 189
Query: 186 VYVVEPD 192
V V+ D
Sbjct: 190 VVVIGKD 196
>gi|348674011|gb|EGZ13830.1| hypothetical protein PHYSODRAFT_286698 [Phytophthora sojae]
Length = 247
Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 89/207 (42%), Gaps = 9/207 (4%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG ++A+AG++ + D L G ++ E+K+HQ++P L PG D +Q
Sbjct: 43 NGGTVLAIAGEDFVVVAGDTRLSTGYSVLSREESKLHQLTPTSVLGCPGSHNDIIQLRGV 102
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+++R Y ++ +S A + LY+R+ P + I+ G ++G+ + T D
Sbjct: 103 LSIRAQMYQHDNETAMSSSAMAQLLMNTLYSRRFF-PYYAFCILCGI-DENGKGAVYTYD 160
Query: 125 MAGCETRKTDFVAGGSAQ-------NMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERD 177
G R T G N++ + + LS ++ ++ I A ERD
Sbjct: 161 AIGSYDRVTRAAQGSGGHLMIPLLDNLVEHDTRTDPKKTLSLQETKDIIKDAFITAGERD 220
Query: 178 TKSGWGATVYVVEPDKVTIRKIATRMD 204
+G + ++ + A + D
Sbjct: 221 IYTGDSVEILTIKASGIAREVFALKKD 247
>gi|396082339|gb|AFN83949.1| proteasome subunit beta type-6 [Encephalitozoon romaleae SJ-2008]
Length = 202
Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 76/189 (40%), Gaps = 7/189 (3%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G I+A+ IG D G + + +K+ Q++ +++ G AD +E +
Sbjct: 9 GTTIIAIKYDGGVLIGADSRTSMGTYIPSRVTDKLTQITNKIFVCRSGSSADTQMISEYL 68
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
+ Y E S S A +AS +Y +P + +I Y D VF +L
Sbjct: 69 KMYLNMYSRLESSVPSVHRAATLASKIIYE----NPTLLAGLIVAGYDDKPRVFNISL-- 122
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
G + D+ GGS I G + W+ G+S E+ + V A RD SG
Sbjct: 123 -GGSLMECDWAIGGSGSAFIYGYCDMNWRSGMSLEEGIKFIKDAVSSAIRRDNASGGCIR 181
Query: 186 VYVVEPDKV 194
+ + D V
Sbjct: 182 MSAISRDGV 190
>gi|111226971|ref|XP_001134620.1| proteasome subunit beta type 1 [Dictyostelium discoideum AX4]
gi|74926737|sp|Q86A21.1|PSB1_DICDI RecName: Full=Proteasome subunit beta type-1
gi|90971293|gb|EAS66954.1| proteasome subunit beta type 1 [Dictyostelium discoideum AX4]
Length = 236
Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 95/213 (44%), Gaps = 14/213 (6%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYE-NKVHQMSPHLYLINPGLCADGMQF 61
+++GG ++A+AGK+ I D + G + I + K+ Q++ L G+ AD +
Sbjct: 27 VDNGGTVLAVAGKDYCVIAGDTRMSDGGYGIQTRKYTKIFQLTKKCVLATSGMQADTIAL 86
Query: 62 AEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLS 121
+++ ++ P+S A S LY ++ P + ++AG + GE ++
Sbjct: 87 QKRLKSMLESFEKEHGKPMSTPAIAQFLSNTLYYKRFF-PYYTFNLVAGV-DEQGEGWIW 144
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGES----FWQ------PGLSPEQLFEVCSQVVI 171
T D G R + + GS +++ + ++ F Q +S EQ+ +
Sbjct: 145 TYDAVGSHER-VKYSSQGSGNQLVIPLLDNQVAKFNQQIVEGNKDVSCEQVVSFVKDSIT 203
Query: 172 QACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A ERD +G A + VV+ + V K ++D
Sbjct: 204 SAGERDIYTGDFADIVVVDKNGVHWEKFELKLD 236
>gi|429965350|gb|ELA47347.1| hypothetical protein VCUG_01116 [Vavraia culicis 'floridensis']
Length = 201
Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 83/190 (43%), Gaps = 7/190 (3%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G IVAM + D G + + NK+ ++SP +Y G + AE
Sbjct: 8 GTTIVAMKFDGGVIMAADSRTSMGAYVMNRVTNKLTKLSPRIYCCRSGRSSHTQIIAEYT 67
Query: 66 TLRTANYVAS-EQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ +T + S E+ P+ D + + Y +P+ II Y + + + +++
Sbjct: 68 SSKTNLFAYSNEREPLVRDAANLVRALVYY-----NPMLTASIIVAGYDEEEKGSIYSVN 122
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ G ++ ++ GGS I G +S ++ +S ++ FE+ ++V A RD SG
Sbjct: 123 LGGTLLKR-EWAMGGSGSIFIYGYCDSMYRSDMSFDEKFELTKKLVQLAINRDNSSGGCI 181
Query: 185 TVYVVEPDKV 194
+ V+ + V
Sbjct: 182 RMAVIRKEGV 191
>gi|226372486|gb|ACO51868.1| Proteasome subunit beta type-1-A [Rana catesbeiana]
Length = 240
Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 92/210 (43%), Gaps = 14/210 (6%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN-KVHQMSPHLYLINPGLCADGMQFAE 63
+GG ++A+AG++ FA+ + D++I K ++++ + G D + +
Sbjct: 35 NGGTVLALAGED-FALVASDTRLSEDYSIHSRNTPKCYKLTDKTVIGCSGFHGDCLTLTK 93
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y S ++ + AA+ S LY+R+ P ++ II G + G+ + +
Sbjct: 94 IIEARLKMYKHSNNKTMTSNAIAAMLSTILYSRRFF-PYYVYNIIGGL-DEEGKGAVYSF 151
Query: 124 DMAGCETRKTDFVAGGSAQNMIM-----GIGESFWQP----GLSPEQLFEVCSQVVIQAC 174
D G R + AGGSA M+ IG Q L+ E+ ++ V I A
Sbjct: 152 DPVGSYQRDA-YKAGGSASAMLQPLLDNQIGYKNMQNVEHLPLTLEKALQLVKDVFISAA 210
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G + +V D + I R D
Sbjct: 211 ERDVYTGDALKISIVTKDGIKEESIPLRKD 240
>gi|147919477|ref|YP_686783.1| 20S proteasome, beta subunit [Methanocella arvoryzae MRE50]
gi|121685330|sp|Q0W2D6.1|PSB_UNCMA RecName: Full=Proteasome subunit beta; AltName: Full=20S proteasome
beta subunit; AltName: Full=Proteasome core protein
PsmB; Flags: Precursor
gi|110622179|emb|CAJ37457.1| 20S proteasome, beta subunit [Methanocella arvoryzae MRE50]
Length = 208
Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 78/168 (46%), Gaps = 3/168 (1%)
Query: 29 GDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAI 88
G+F + K+++++ + + G DG + A + + + +S + + +
Sbjct: 32 GNFIASRDAQKIYRITDNAAMTIAGSVGDGQRLARILQVEAKLFELRRHGSMSINALSML 91
Query: 89 ASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGI 148
S + A +P ++ +I G +++ +LD G + FV+ GS + G+
Sbjct: 92 LS-NILAEMRYAPYYVQVLIGGLDKAGPKIY--SLDPLGGRIEEEKFVSTGSGSPIAYGV 148
Query: 149 GESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTI 196
E ++PG+S E+ E+ ++ + A +RD+ SG G V+ +K I
Sbjct: 149 LEDRYKPGMSVEEGVELAARALESAMKRDSASGNGMQFCVITAEKFEI 196
>gi|397780986|ref|YP_006545459.1| proteasome beta subunit [Methanoculleus bourgensis MS2]
gi|396939488|emb|CCJ36743.1| proteasome beta subunit [Methanoculleus bourgensis MS2]
Length = 214
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 80/188 (42%), Gaps = 3/188 (1%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G V + K+ + + G+ ++ K+++++P + + G D Q +
Sbjct: 11 GTTTVGLIFKDGVVLATEMRATMGNLIASKRAKKIYKITPRIGMTTAGGVGDAQQLVRII 70
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
+ + Y +S + + S L + P ++ ++ GF D G + ++D
Sbjct: 71 QVECSLYEMRRGRTMSVGAASTLLSNYLNQNRYY-PYYVQLLMGGF--DEGGPSVYSVDA 127
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
G TR+ + VA GS G+ E ++P ++ E+ ++ + V A RD SG
Sbjct: 128 MGGATREEEIVATGSGSPFAYGVLEDQYRPDMTEEEAKDLAIRAVRSAMRRDAGSGENIM 187
Query: 186 VYVVEPDK 193
V V+ DK
Sbjct: 188 VVVIMKDK 195
>gi|407405474|gb|EKF30441.1| proteasome beta-1 subunit, putative [Trypanosoma cruzi marinkellei]
Length = 284
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 84/198 (42%), Gaps = 15/198 (7%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G I+A++ K + D G + + NK+ +++ +Y G AD AE+
Sbjct: 54 GTTIMAVSFKGGVVLAADSRTSTGTYVVNRASNKLTKLAEKVYCCRSGSAADTQALAEQ- 112
Query: 66 TLRTANYVASEQS----PISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLS 121
TANY+ S ++ P + T A I Y K I I+AG+ P +G S
Sbjct: 113 ---TANYLESYETDTSKPANVTTAANIFKKLCYMNKWNISAGI--IVAGYDPLNGGSVYS 167
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
C K D+ GGS + ++ ++ G+S E+ C + V A RD SG
Sbjct: 168 IPSGGSC--VKLDYALGGSGSIFLYSFFDANYKTGMSKEECVCFCQRAVAHAYSRDGSSG 225
Query: 182 ---WGATVYVVEPDKVTI 196
++ EP+ +TI
Sbjct: 226 GLIRTIALHQGEPEDMTI 243
>gi|395535314|ref|XP_003769673.1| PREDICTED: proteasome subunit beta type-1 [Sarcophilus harrisii]
Length = 244
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 94/210 (44%), Gaps = 14/210 (6%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN-KVHQMSPHLYLINPGLCADGMQFAE 63
+GG ++A+AG++ + D L +G F+I ++ K ++++ + G D + +
Sbjct: 39 NGGTVLAIAGEDFSIVASDTRLSEG-FSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 97
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y S ++ AA+ S LY+R+ P ++ II G + G+ + +
Sbjct: 98 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFF-PYYVYNIIGGL-DEEGKGAVYSF 155
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGI---------GESFWQPGLSPEQLFEVCSQVVIQAC 174
D G R + F AGGSA M+ + ++ LS E+ ++ V I A
Sbjct: 156 DPVGSYQRDS-FKAGGSASAMLQPLLDNQVGFKNMQNVEHIPLSLERAMQLVKDVFISAA 214
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G + +V D + + R D
Sbjct: 215 ERDVYTGDSLKICIVTKDGIKEETVPLRKD 244
>gi|303278464|ref|XP_003058525.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459685|gb|EEH56980.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 220
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 85/204 (41%), Gaps = 20/204 (9%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
N+GG ++A+AG++ D + G + K+ +M+ + + G AD + +
Sbjct: 10 NNGGTVLAVAGEDYVVCAADTRMSTGYSVLTRDYKKIEKMTEKCVMASAGFMADAVTLKK 69
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPD-SGEVFLST 122
+ R +Y + +FA + S LY R+ P + I+AG + G VF T
Sbjct: 70 TLKARCVSYEFQNNKEMGCVSFAQMLSNTLYYRRFF-PYYTFNIVAGLDKEGKGAVF--T 126
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGI--------------GESFWQPGLSPEQLFEVCSQ 168
D G R T++ GS Q +IM + +S P LS + ++
Sbjct: 127 YDAVGSYER-TNYSCQGSGQGLIMPVLDNQLKTVSPLVLPAQSSATP-LSESEAVDLVKD 184
Query: 169 VVIQACERDTKSGWGATVYVVEPD 192
A ERD +G ++++ D
Sbjct: 185 CFATAGERDIYTGDSVEIWIINKD 208
>gi|17380206|sp|Q9IB83.1|PSB1B_CARAU RecName: Full=Proteasome subunit beta type-1-B; AltName: Full=20S
proteasome beta-6 subunit B; Short=B6-B
gi|7768841|dbj|BAA95592.1| 20S proteasome beta 6 subunit [Carassius auratus]
Length = 237
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 90/209 (43%), Gaps = 12/209 (5%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG ++A+AG++ + D L +G + K ++++ + G D + +
Sbjct: 32 NGGTVLAVAGEDFALVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDCLTLTKI 91
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y S ++ AA+ S LY R+ P ++ II G + G + + D
Sbjct: 92 IEARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFF-PYYVYNIIGGL-DEEGRGAVYSFD 149
Query: 125 MAGCETRKTDFVAGGSAQNMIM-----GIG----ESFWQPGLSPEQLFEVCSQVVIQACE 175
G R T + AGGSA M+ IG E+ Q LS E+ ++ V I A E
Sbjct: 150 PVGSYQRDT-YKAGGSASAMLQPLLDNQIGFKNMENVEQVPLSQEKAVQLVKDVFISAAE 208
Query: 176 RDTKSGWGATVYVVEPDKVTIRKIATRMD 204
RD +G + ++ + + + R D
Sbjct: 209 RDVYTGDALKICIITKEGIREEIVPLRKD 237
>gi|17380207|sp|Q9IB84.1|PSB1A_CARAU RecName: Full=Proteasome subunit beta type-1-A; AltName: Full=20S
proteasome beta-6 subunit A; Short=B6-A
gi|7768839|dbj|BAA95591.1| 20S proteasome beta 6 subunit [Carassius auratus]
Length = 238
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 90/209 (43%), Gaps = 12/209 (5%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG ++A+AG++ + D L +G + K ++++ + G D + +
Sbjct: 33 NGGTVLAVAGEDFALVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDCLTLTKI 92
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y S ++ AA+ S LY R+ P ++ II G + G + + D
Sbjct: 93 IEARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFF-PYYVYNIIGGL-DEEGRGAVYSFD 150
Query: 125 MAGCETRKTDFVAGGSAQNMIM-----GIG----ESFWQPGLSPEQLFEVCSQVVIQACE 175
G R T + AGGSA M+ IG E+ Q LS E+ ++ V I A E
Sbjct: 151 PVGSYQRDT-YKAGGSASAMLQPLLDNQIGFKNMENVEQVPLSQEKAVQLVKDVFISAAE 209
Query: 176 RDTKSGWGATVYVVEPDKVTIRKIATRMD 204
RD +G + ++ + + + R D
Sbjct: 210 RDVYTGDALKICIITKEGIREEIVPLRKD 238
>gi|225719280|gb|ACO15486.1| Proteasome subunit beta type-1 precursor [Caligus clemensi]
Length = 239
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 86/211 (40%), Gaps = 13/211 (6%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYE-NKVHQMSPHLYLINPGLCADGMQFA 62
++GG + +AG + I D L G + I KV Q+S L + G D + F
Sbjct: 32 DNGGTTIGIAGPDFAVIASDTRLTSGGYDILSRNVPKVFQLSEKSVLGSCGCWCDVLTFV 91
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLST 122
M + NY + + A + S LY R+ P +I+ ++AG ++G+ + T
Sbjct: 92 RVMESKMKNYSYTHGKDLGTPALAQLISNSLYQRRFL-PYYIHNVLAGL-DENGQGCIYT 149
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGESF---------WQPGLSPEQLFEVCSQVVIQA 173
D GC K G++ +I I ++ + L+ ++ + + A
Sbjct: 150 YDPVGC-IEKVTMSCSGASMELIQPILDNIIDKKNMTNATKKDLTIDESVNLIHDCFVSA 208
Query: 174 CERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ER +G G ++ D + + + R D
Sbjct: 209 TERQISTGDGIIFKIITKDGIETKSVGLRRD 239
>gi|159118134|ref|XP_001709286.1| Proteasome subunit beta type 1 [Giardia lamblia ATCC 50803]
gi|157437402|gb|EDO81612.1| Proteasome subunit beta type 1 [Giardia lamblia ATCC 50803]
Length = 254
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 89/206 (43%), Gaps = 7/206 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
+++GG I+A+AG + I D L +G ++ KV ++ + G+ AD +
Sbjct: 52 IDNGGTIIAIAGPDFAMIAGDTRLSEGYNILSRNVRKVFPVTDKIVYAASGMHADVQRLL 111
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLST 122
+ M + + Y Q I+ + F + S +Y R+ + P + + I+AG G + +
Sbjct: 112 KHMKIESTEYYLKTQKEIAIEQFIRLLSAMMYYRR-SFPWYTSSIVAGI-DSEGRGAVYS 169
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGE----SFWQPGLSPEQLFEVCSQVVIQACERDT 178
D+ G T +T + + G+ MI I + S + ++ E FE+ ERD
Sbjct: 170 YDVIGS-TLRTRYGSAGTGNAMICPILDEAILSKNEAEITREFAFELIQSAFRSCAERDI 228
Query: 179 KSGWGATVYVVEPDKVTIRKIATRMD 204
+G + D + R R D
Sbjct: 229 YTGDSVVAMCISADGIQERTFELRKD 254
>gi|209734840|gb|ACI68289.1| Proteasome subunit beta type-1-A [Salmo salar]
Length = 237
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 88/209 (42%), Gaps = 12/209 (5%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG ++A+AG++ + D L +G + K ++++ + G D + +
Sbjct: 32 NGGTVLAVAGEDFAVVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDCLTLTKI 91
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y S ++ AA+ S LY R+ P ++ II G + G+ + + D
Sbjct: 92 IDARLKMYKHSNNKCMTSGAIAAMLSTILYGRRFF-PYYVYNIIGGL-DEEGKGAVYSFD 149
Query: 125 MAGCETRKTDFVAGGSAQNMIM-----GIG----ESFWQPGLSPEQLFEVCSQVVIQACE 175
G R T + AGGSA M+ IG E LS E+ ++ V I A E
Sbjct: 150 PVGSYQRDT-YKAGGSASAMLQPLLDNQIGFKNMEGVQHLPLSQEKAVQLVKDVFISAAE 208
Query: 176 RDTKSGWGATVYVVEPDKVTIRKIATRMD 204
RD +G + +V D + R D
Sbjct: 209 RDVYTGDALRICIVTKDGIKEETFPLRKD 237
>gi|401417224|ref|XP_003873105.1| putative proteasome beta-1 subunit [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322489333|emb|CBZ24592.1| putative proteasome beta-1 subunit [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 283
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 74/178 (41%), Gaps = 8/178 (4%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G I+A++ K + D G + + NK+ +++ +Y G AD AE
Sbjct: 54 GTTILAVSYKGGVVLAADSRTSSGTYVVNRASNKLTKLTKKIYCCRSGSAADTQALAE-- 111
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINP--IIAGFYPDSGEVFLSTL 123
R +NY+ S Q+ I D A A+ + + I+ I+AG+ +G S
Sbjct: 112 --RVSNYLGSYQTDIGADVNVATAANLFHKMCYVNRWNISAGIIVAGYDLINGGSVYSIP 169
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
C K D+ GGS + ++ ++P +S + C + V A RD SG
Sbjct: 170 SGGSCV--KLDYALGGSGSIFLYSFFDANYKPDMSKSECVAFCQRAVAHAYSRDGSSG 225
>gi|91092850|ref|XP_968855.1| PREDICTED: similar to proteasome beta subunit [Tribolium castaneum]
gi|270003046|gb|EEZ99493.1| hypothetical protein TcasGA2_TC000069 [Tribolium castaneum]
Length = 235
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 87/210 (41%), Gaps = 12/210 (5%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG++VA+AG + IG D L G +NK+ ++S L G D +
Sbjct: 29 DNGGSVVAIAGDDFVVIGADTRLSAGFSIYTRDQNKLFRLSDTTVLGCSGCWCDTLTLTR 88
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
++ R Y ++ A + S LY ++ P +I+ I+ G + S
Sbjct: 89 ILSARMQMYQQEHNKTMATPACAQMLSTMLYYKRFF-PYYISNILVGLDNEGKGCIYSYD 147
Query: 124 DMAGCETRKTDFVAGGSAQNMIM-----GIG----ESFWQPGLSPEQLFEVCSQVVIQAC 174
+ CE KT + AGGSA ++ IG ++ L+ E+ + V I A
Sbjct: 148 PIGHCE--KTTYRAGGSAGALLQPLLDNQIGLKNMQNVKDSKLTLERAAAIIKDVFISAA 205
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G + ++ D + R D
Sbjct: 206 ERDIFTGDNILINIITKDGIKEDSFQLRKD 235
>gi|308159821|gb|EFO62339.1| Proteasome subunit beta type 1 [Giardia lamblia P15]
Length = 214
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 89/205 (43%), Gaps = 7/205 (3%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG I+A+AG + I D L +G ++ KV ++ + G+ AD + +
Sbjct: 13 DNGGTIIAIAGPDFAIIAGDTRLSEGYNILSRNVRKVFPVTDKIVYAASGMHADVQRLIK 72
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
M + + Y Q I+ + F + S +Y R+ + P + + I+AG G+ + +
Sbjct: 73 HMKIESTEYYLKTQKEIAIEQFIRLLSAMMYYRR-SFPWYTSSIVAGI-DSEGKGAVYSY 130
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGE----SFWQPGLSPEQLFEVCSQVVIQACERDTK 179
D+ G T +T + + G+ MI I + S + ++ E FE+ ERD
Sbjct: 131 DVIGS-TLRTRYGSAGTGNAMICPILDEAILSKNEAEITREFAFELIQSAFRSCAERDIY 189
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
+G + D + R R D
Sbjct: 190 TGDSVVAMCISADGIQERTFELRKD 214
>gi|70937358|ref|XP_739497.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56516540|emb|CAH84497.1| hypothetical protein PC301073.00.0 [Plasmodium chabaudi chabaudi]
Length = 128
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
Query: 12 MAGKNCFAIGVDHLLVQGDFT-IAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTA 70
M+G C AI D L FT ++ K+ +++ H+Y+ GL D E + R
Sbjct: 1 MSGSQCVAIACDLRLGSNSFTTVSTNFTKIFKINDHIYVGLSGLATDIQSLYELLRYRVN 60
Query: 71 NYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGF 111
Y +++ ++ D F+ + S LY+ + SP F+NPI+ GF
Sbjct: 61 LYQIRQETEMNIDCFSNMLSNILYSNRF-SPYFVNPIVVGF 100
>gi|225719776|gb|ACO15734.1| Proteasome subunit beta type-1 precursor [Caligus clemensi]
Length = 271
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 86/211 (40%), Gaps = 13/211 (6%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYE-NKVHQMSPHLYLINPGLCADGMQFA 62
++GG + +AG + I D L G + I KV Q+S L + G D + F
Sbjct: 64 DNGGTTIGIAGPDFAVIASDTRLTSGGYDILSRNVPKVFQLSEKSVLGSCGCWCDVLTFV 123
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLST 122
M + NY + + A + S LY R+ P +I+ ++AG ++G+ + T
Sbjct: 124 RVMESKMKNYSYTHGKDLGTPALAQLISNSLYQRRFL-PYYIHNVLAGL-DENGQGCIYT 181
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGESF---------WQPGLSPEQLFEVCSQVVIQA 173
D GC K G++ +I I ++ + L+ ++ + + A
Sbjct: 182 YDPVGC-IEKVTMSCSGASMELIQPILDNIIDKKNMTNATKKDLTIDESVNLIHDCFVSA 240
Query: 174 CERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ER +G G ++ D + + + R D
Sbjct: 241 TERQISTGDGIIFKIITKDGIETKSVGLRRD 271
>gi|211939905|gb|ACJ13433.1| proteasome subunit beta 1 [Helicoverpa armigera]
Length = 232
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 87/210 (41%), Gaps = 12/210 (5%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG+IVA+AG + IG D L G + K+ ++S L G D +
Sbjct: 26 DNGGSIVAIAGDDFAVIGADTRLSTGFSIYTREQKKLFKLSDKTVLGATGCWCDTLTLTR 85
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
++ R Y +S A + S LY ++ P +++ ++AG D S
Sbjct: 86 LLSARMQMYEHEHNKSMSTPAVAQMLSTMLYYKRFF-PYYVSNVLAGLDADGKGCVYSYD 144
Query: 124 DMAGCETRKTDFVAGGSAQNMIM-----GIG----ESFWQPGLSPEQLFEVCSQVVIQAC 174
+ CE ++++ AGGSA + IG ++ + + E+ + V I A
Sbjct: 145 PIGHCE--RSNYRAGGSAGAQLQPLLDNQIGLKNMQNVTEAPIPKEKALALLKDVFISAA 202
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G + ++ + K R D
Sbjct: 203 ERDIYTGDCIYILIITASGIQEEKFELRKD 232
>gi|47217169|emb|CAG11005.1| unnamed protein product [Tetraodon nigroviridis]
Length = 237
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 90/209 (43%), Gaps = 12/209 (5%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG ++A+AG + + D L +G + K ++++ + G D + +
Sbjct: 32 NGGTVLAVAGDDFAIVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDCLTLTKI 91
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y S +S AA+ S LY R+ P ++ II G + G+ + + D
Sbjct: 92 IDARLKMYKHSNNKTMSSGAIAAMLSTILYGRRFF-PYYVYNIIGGL-DEEGKGAVYSFD 149
Query: 125 MAGCETRKTDFVAGGSAQNMIM-----GIG----ESFWQPGLSPEQLFEVCSQVVIQACE 175
G R T + AGGSA M+ IG + Q L+ E+ ++ V I A E
Sbjct: 150 PVGSYQRDT-YKAGGSASAMLQPLLDNQIGFKNMDGVQQVPLTQEKAIQLVKDVFISAAE 208
Query: 176 RDTKSGWGATVYVVEPDKVTIRKIATRMD 204
RD +G + ++ + + + + R D
Sbjct: 209 RDVYTGDALHICIITKEGIQEQTVQLRKD 237
>gi|348561415|ref|XP_003466508.1| PREDICTED: proteasome subunit beta type-1-like [Cavia porcellus]
Length = 241
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 93/210 (44%), Gaps = 14/210 (6%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN-KVHQMSPHLYLINPGLCADGMQFAE 63
+GG ++A+AG++ + D L +G F+I ++ K ++++ + G D + +
Sbjct: 36 NGGTVLAIAGEDFSIVASDTRLSEG-FSIHTRDSPKCYKLTDRTVIGCSGFHGDCLTLTK 94
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y S ++ AA+ S LY+R+ P ++ II G + G+ + +
Sbjct: 95 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFF-PYYVYNIIGGL-DEEGKGAVYSF 152
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGI---------GESFWQPGLSPEQLFEVCSQVVIQAC 174
D G R + F AGGSA M+ + ++ LS ++ + V I A
Sbjct: 153 DPVGSYQRDS-FKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAA 211
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G + +V D + I R D
Sbjct: 212 ERDVYTGDALKICIVTKDGIREETIPLRKD 241
>gi|51468069|ref|NP_001003889.1| proteasome subunit beta type-1 [Danio rerio]
gi|49619079|gb|AAT68124.1| proteasome beta-subunit C5 [Danio rerio]
gi|55715844|gb|AAH85580.1| Proteasome (prosome, macropain) subunit, beta type, 1 [Danio rerio]
gi|182891728|gb|AAI65077.1| Psmb1 protein [Danio rerio]
Length = 237
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 89/209 (42%), Gaps = 12/209 (5%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG ++A+AG++ + D L +G + K ++++ L G D + +
Sbjct: 32 NGGTVLAVAGEDFAIVASDTRLSEGYSIHSRDSPKCYKLTDTTVLGCSGFHGDCLTLTKI 91
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y S ++ AA+ S LY R+ P ++ II G + G + + D
Sbjct: 92 IEARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFF-PYYVYNIIGGL-DEEGRGAVYSFD 149
Query: 125 MAGCETRKTDFVAGGSAQNMIM-----GIG----ESFWQPGLSPEQLFEVCSQVVIQACE 175
G R T + AGGSA M+ IG E+ L+ E+ ++ V I A E
Sbjct: 150 PVGSYQRDT-YKAGGSASAMLQPLLDNQIGFKNMENVEHVPLTQEKAVQLVKDVFISAAE 208
Query: 176 RDTKSGWGATVYVVEPDKVTIRKIATRMD 204
RD +G V +V + + + R D
Sbjct: 209 RDVYTGDALKVCIVSKEGIKEEIVPLRKD 237
>gi|449329908|gb|AGE96176.1| proteasome b-type subunit delta chain [Encephalitozoon cuniculi]
Length = 203
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 74/176 (42%), Gaps = 7/176 (3%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G I+A+ + IG D G + + +K+ Q++ +++ G AD + +
Sbjct: 10 GTTIIAIKYDDGVLIGADSRTSMGAYVSSRVTDKLTQITDKIFVCRSGSSADTQMISSYL 69
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
+ + Y E S AA+AS +Y +P + +I Y D VF + +
Sbjct: 70 RMYLSMYSQLEDSIPQVQRAAALASKIIYE----NPSLLAGLIVAGYDDKPRVF--NISL 123
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
G T + D+ GGS I G + W+ G+S E+ + V A RD SG
Sbjct: 124 GGSLTER-DWAIGGSGSAFIYGYCDVNWRSGMSLEEGIKFVRNAVSCAINRDNASG 178
>gi|68005971|ref|XP_670208.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56485245|emb|CAI01353.1| hypothetical protein PB300168.00.0 [Plasmodium berghei]
Length = 58
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/43 (53%), Positives = 30/43 (69%)
Query: 162 LFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
LFE SQ ++ A +RD SGWGA VYV+ PDK+ +K+ RMD
Sbjct: 5 LFETVSQCLLSALDRDCLSGWGAEVYVLTPDKIIKKKLKARMD 47
>gi|253747271|gb|EET02070.1| Proteasome subunit beta type 1 [Giardia intestinalis ATCC 50581]
Length = 220
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 89/205 (43%), Gaps = 7/205 (3%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG I+A+AG + I D L +G ++ KV ++ + G+ AD + +
Sbjct: 19 DNGGTIIAIAGPDFAIIAGDTRLSEGYNILSRNVRKVFPVTDKIVYAASGMHADVQRLIK 78
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
M + + +Y Q ++ + F + S +Y R+ + P + + I+AG G+ + +
Sbjct: 79 HMKIESTDYHLKTQREMAIEQFTRLLSAMMYYRR-SFPWYTSSIVAGI-DSEGKGAVYSY 136
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPG----LSPEQLFEVCSQVVIQACERDTK 179
D+ G T +T + + G+ MI I + P ++ E FE+ ERD
Sbjct: 137 DVIGS-TLRTRYGSAGTGNAMICPILDEAILPKSDAEITREFAFELIQSAFKSCAERDIY 195
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
+G + D + R R D
Sbjct: 196 TGDSVVAMCISADGIQERTFELRKD 220
>gi|385303180|gb|EIF47271.1| proteasome component c5 [Dekkera bruxellensis AWRI1499]
Length = 243
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 92/218 (42%), Gaps = 20/218 (9%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG I+ +AG++ + D G + YE KVH + +L L G ADG+Q +
Sbjct: 29 DNGGTILGIAGEDFAVLAGDTRQTVGYSIDSRYEPKVHNVGDNLLLSANGFSADGVQLVK 88
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ Y +S D+ A + LY +++ P +++ I+AG G+ + +
Sbjct: 89 VFQNQLKWYHFDNNKDMSVDSAARLIQHLLYGKRMF-PYYVSTILAGL-DKEGKGAIYSF 146
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGI--GESFWQPGLSPE---------------QLFEVC 166
D G R+ AGG+A ++IM + ++ + PE ++ ++
Sbjct: 147 DPVGSYEREQ-CRAGGAAASLIMPFLDNQVNFKNQMDPESNGTKQRPIKYLKLDEVIQLV 205
Query: 167 SQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A ER + G G + VV D V + D
Sbjct: 206 RDAFTSATERHIEVGDGLQILVVTKDGVXTEYYPLKRD 243
>gi|229367266|gb|ACQ58613.1| Proteasome subunit beta type-1-A [Anoplopoma fimbria]
Length = 237
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 92/209 (44%), Gaps = 12/209 (5%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG ++A+AG++ + D L +G + K ++++ + G D + +
Sbjct: 32 NGGTVLAVAGEDFAIVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDCLTLTKI 91
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y S ++ + AA+ S LY R+ P ++ II G + G+ + + D
Sbjct: 92 IDARLKMYKHSNNKTMTSNAIAAMLSTILYGRRFF-PYYVYNIIGGL-DEHGKGAVYSFD 149
Query: 125 MAGCETRKTDFVAGGSAQNMIM-----GIG----ESFWQPGLSPEQLFEVCSQVVIQACE 175
G R T + AGGSA M+ IG E L+ ++ ++ V I A E
Sbjct: 150 PVGSYQRDT-YKAGGSASAMLQPLLDNQIGFKNMEGVQHVPLTQDKAVQLVKDVFISAAE 208
Query: 176 RDTKSGWGATVYVVEPDKVTIRKIATRMD 204
RD +G V ++ + ++ + + R D
Sbjct: 209 RDVYTGDALRVCIITKEGISEQTVPLRKD 237
>gi|229367074|gb|ACQ58517.1| Proteasome subunit beta type-1-A [Anoplopoma fimbria]
Length = 237
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 92/209 (44%), Gaps = 12/209 (5%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG ++A+AG++ + D L +G + K ++++ + G D + +
Sbjct: 32 NGGTVLAVAGEDFAIVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDCLTLTKI 91
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y S ++ + AA+ S LY R+ P ++ II G + G+ + + D
Sbjct: 92 IDARLKMYKHSNNKTMTSNAIAAMLSTILYGRRFF-PYYVYNIIGGL-DEHGKGAVYSFD 149
Query: 125 MAGCETRKTDFVAGGSAQNMIM-----GIG----ESFWQPGLSPEQLFEVCSQVVIQACE 175
G R T + AGGSA M+ IG E L+ ++ ++ V I A E
Sbjct: 150 PVGSYQRDT-YKAGGSASAMLQPLLDNQIGFKNMEGVQHVPLTQDKAVQLVKDVFISAAE 208
Query: 176 RDTKSGWGATVYVVEPDKVTIRKIATRMD 204
RD +G V ++ + ++ + + R D
Sbjct: 209 RDVYTGDALRVCIITKEGISEQTVPLRKD 237
>gi|19074754|ref|NP_586260.1| PROTEASOME B-TYPE SUBUNIT DELTA CHAIN [Encephalitozoon cuniculi
GB-M1]
gi|74664171|sp|Q8SR11.1|PSB1_ENCCU RecName: Full=Probable proteasome subunit beta type-1; AltName:
Full=26S proteasome beta-type subunit PRE3; AltName:
Full=Multicatalytic endopeptidase complex subunit PRE3;
Flags: Precursor
gi|19069396|emb|CAD25864.1| PROTEASOME B-TYPE SUBUNIT DELTA CHAIN [Encephalitozoon cuniculi
GB-M1]
Length = 203
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 7/176 (3%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G I+A+ + IG D G + + +K+ Q++ +++ G AD + +
Sbjct: 10 GTTIIAIKYDDGVLIGADSRTSMGAYVSSRVTDKLTQITDKIFVCRSGSSADTQMISSYL 69
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
+ + Y E S AA+AS +Y +P + +I Y D VF + +
Sbjct: 70 RMYLSMYSQLEDSIPQVQRAAALASKIIY----ENPSLLAGLIVAGYDDKPRVF--NISL 123
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
G T + D+ GGS I G + W+ G+S E+ V A RD SG
Sbjct: 124 GGSLTER-DWAIGGSGSAFIYGYCDVNWRSGMSLEEGIRFVRNAVSCAINRDNASG 178
>gi|405121415|gb|AFR96184.1| proteasome subunit [Cryptococcus neoformans var. grubii H99]
Length = 272
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 89/204 (43%), Gaps = 24/204 (11%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG+I+A+AGK+ I D +G Y KV Q++ + L G ADG F +
Sbjct: 29 DNGGSILAIAGKDFSIIAGDTRQSEGYSIQTRYARKVWQLTDKVVLATNGFAADGNNFVK 88
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPD-SGEVFLST 122
++ R Y + + + A + LY ++ P ++ I+ G D SG V+ +
Sbjct: 89 RVKQRLEWYEHAHNKSMGLKSIARMIQTMLYGKRFF-PYYVYNILGGIEEDGSGAVY--S 145
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGI--------------GESFWQPGLSPEQLFEVCSQ 168
D G R+ A G+AQ++I G + + PG P L V S
Sbjct: 146 FDPVGSYEREA-CRAAGAAQSLIQPFLDNQVYFRNQQPEPGAAPFVPGNLP--LSTVLSL 202
Query: 169 VV---IQACERDTKSGWGATVYVV 189
VV A ER + G G +YVV
Sbjct: 203 VVDSFTSATERHIEVGDGMEIYVV 226
>gi|348534148|ref|XP_003454565.1| PREDICTED: proteasome subunit beta type-1-A-like [Oreochromis
niloticus]
Length = 237
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 90/209 (43%), Gaps = 12/209 (5%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG ++A+AG++ + D L +G + K ++++ L G D + +
Sbjct: 32 NGGTVLAVAGEDFAIVASDTRLSEGYSIHSRDSPKCYKLTDTTVLGCSGFHGDCLTLTKI 91
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y S ++ AA+ S LY+R+ P ++ II G + G+ + + D
Sbjct: 92 IDARLKMYKHSNNKTMTSGAIAAMLSTILYSRRFF-PYYVYNIIGGL-DEEGKGAVYSFD 149
Query: 125 MAGCETRKTDFVAGGSAQNMIM-----GIG----ESFWQPGLSPEQLFEVCSQVVIQACE 175
G R T + AGGSA M+ IG E L+ ++ ++ V I A E
Sbjct: 150 PVGSYQRDT-YKAGGSASAMLQPLLDNQIGFKNMEGVEHVPLTKDKAVQLVKDVFISAAE 208
Query: 176 RDTKSGWGATVYVVEPDKVTIRKIATRMD 204
RD +G + V+ + + I R D
Sbjct: 209 RDVYTGDALRICVITKEGINEETIPLRKD 237
>gi|346472379|gb|AEO36034.1| hypothetical protein [Amblyomma maculatum]
Length = 232
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 89/209 (42%), Gaps = 12/209 (5%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG+IVA+AG++ I D L G ++K+ ++S L + G D + F
Sbjct: 27 NGGSIVAIAGEDFAVIASDSRLSTGYSIYTREQSKLFKLSNQCVLGSTGCWCDILTFTRF 86
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y+ +S A + LY ++ P +I+ I+AG D
Sbjct: 87 LEARMKMYLHEHHRLMSTPAVAQLVVTMLYNKRFF-PYYISNILAGLDEDGKGCIYCYDP 145
Query: 125 MAGCETRKTDFVAGGSAQNMIM-----GIG-ESFWQPGLSP---EQLFEVCSQVVIQACE 175
+ CE + + AGGS+ ++ IG ++ L P E+ + V I + E
Sbjct: 146 VGHCE--RVQYRAGGSSSALLQPLLDNQIGFKNMENVELVPPTRERAVNIIKDVFISSAE 203
Query: 176 RDTKSGWGATVYVVEPDKVTIRKIATRMD 204
RD +G + +++ + + +A R D
Sbjct: 204 RDIYTGDSVVINIIDKNGIKEEMLALRRD 232
>gi|58268196|ref|XP_571254.1| hypothetical protein CNF01080 [Cryptococcus neoformans var.
neoformans JEC21]
gi|134113318|ref|XP_774684.1| hypothetical protein CNBF3630 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257328|gb|EAL20037.1| hypothetical protein CNBF3630 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57227489|gb|AAW43947.1| hypothetical protein CNF01080 [Cryptococcus neoformans var.
neoformans JEC21]
Length = 272
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 89/204 (43%), Gaps = 24/204 (11%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG+I+A+AGK+ I D +G Y KV Q++ + L G ADG F +
Sbjct: 29 DNGGSILAIAGKDFSIIAGDTRQSEGYSIQTRYARKVWQLTDKVVLATNGFAADGNNFVK 88
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPD-SGEVFLST 122
++ R Y + + + A + LY ++ P ++ I+ G D SG V+ +
Sbjct: 89 RVKQRLEWYEHAHNKAMGLKSIARMIQTMLYGKRFF-PYYVYNILGGIEEDGSGAVY--S 145
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGI--------------GESFWQPGLSPEQLFEVCSQ 168
D G R+ A G+AQ++I G + + PG P L V S
Sbjct: 146 FDPVGSYEREA-CRAAGAAQSLIQPFLDNQVYFKNQQPEPGAAPFVPGNLP--LSTVLSL 202
Query: 169 VV---IQACERDTKSGWGATVYVV 189
VV A ER + G G +YVV
Sbjct: 203 VVDSFTSATERHIEVGDGMEIYVV 226
>gi|432852541|ref|XP_004067299.1| PREDICTED: proteasome subunit beta type-1-B-like [Oryzias latipes]
Length = 237
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 91/209 (43%), Gaps = 12/209 (5%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG ++A+AG++ + D L +G + K ++++ L G D + +
Sbjct: 32 NGGTVLAVAGEDFAIVASDTRLSEGYSIHSRDSPKCYKLTDTTVLGCSGFHGDCLTLTKI 91
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y S ++ AA+ S LY+R+ P ++ II G + G+ + + D
Sbjct: 92 IDARLKMYKHSNNKTMTSGAIAAMLSTILYSRRFF-PYYVYNIIGGL-DEQGKGAVYSFD 149
Query: 125 MAGCETRKTDFVAGGSAQNMIM-----GIG----ESFWQPGLSPEQLFEVCSQVVIQACE 175
G R T + AGGSA M+ IG E L+ ++ ++ V + A E
Sbjct: 150 PVGSYQRDT-YKAGGSASAMLQPLLDNQIGFKNMEGVEHVPLTKDKAVQLVKDVFVSAAE 208
Query: 176 RDTKSGWGATVYVVEPDKVTIRKIATRMD 204
RD +G + +V + + + I R D
Sbjct: 209 RDVYTGDALRICIVTKEGIEEQNIPLRKD 237
>gi|149054058|gb|EDM05875.1| rCG33987, isoform CRA_b [Rattus norvegicus]
Length = 112
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 3/101 (2%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GKNC AI D +Q +++ K+ M LY+ GL D
Sbjct: 4 MSYN-GGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTS 100
A+++ R Y E I P T ++ + LY +++ S
Sbjct: 62 TVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRIQS 102
>gi|374633938|ref|ZP_09706303.1| proteasome endopeptidase complex, archaeal, beta subunit
[Metallosphaera yellowstonensis MK1]
gi|373523726|gb|EHP68646.1| proteasome endopeptidase complex, archaeal, beta subunit
[Metallosphaera yellowstonensis MK1]
Length = 212
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 86/191 (45%), Gaps = 13/191 (6%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G V + K+ + D G F + K+ + + + G AD +QF
Sbjct: 18 GTTTVGLVVKDAVVLAADRRASAGFFVANKMVRKILYIDERIGITTAGSVAD-LQFIYNY 76
Query: 66 --TLRTANYVASEQSPISPDTFAAIASW--ELYARKLTSPLFINPIIAGFYPDSGEVFLS 121
+ NY++ + P T A+A++ + ++ P + +I G+ + L
Sbjct: 77 LKNIYHYNYISGNR----PVTVKALATYLTNILSQSKYFPYLVQILIGGY---DVQPRLF 129
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
LD G T +T +VA GS + MG+ E ++P ++P++ E+ ++ V+ A +RD+ +G
Sbjct: 130 NLDYLGDMTEET-YVATGSGSPVAMGVLEDGYRPSMTPDEAVELATRAVLSAIKRDSFTG 188
Query: 182 WGATVYVVEPD 192
G V + D
Sbjct: 189 TGVIVTKITKD 199
>gi|70994594|ref|XP_752074.1| proteasome component Pre1 [Aspergillus fumigatus Af293]
gi|66849708|gb|EAL90036.1| proteasome component Pre1, putative [Aspergillus fumigatus Af293]
Length = 212
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 80/191 (41%), Gaps = 10/191 (5%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
++ + GK+ + ++G + ++K Q+S H + G D +QFAE +
Sbjct: 13 LLGITGKDFVILAASKAAMRGPTILKAEDDKTRQLSQHTLMAFSGEAGDTVQFAEYIQAN 72
Query: 69 TANYVASEQSPISPDTFAAIASWELYARKLTS--PLFINPIIAGFYPDSGEVFLSTLDMA 126
A Y + + P+ A EL AR L S P +N ++ G + E L +D
Sbjct: 73 VALYTMRNDTELRPNAVANFVRGEL-ARSLRSRNPYTVNLLLGGVDSITQEPHLYWIDYL 131
Query: 127 GCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQ---LFEVCSQVVIQACERDTKSGWG 183
R + A G AQ + I + P +S EQ L ++C+ + + D K G
Sbjct: 132 SALAR-VPYAAHGYAQYYCLSILDKHHHPDISLEQGMKLLQMCTDELKRRLPIDYK---G 187
Query: 184 ATVYVVEPDKV 194
V VV D V
Sbjct: 188 VLVKVVTKDGV 198
>gi|159125011|gb|EDP50128.1| proteasome component Pre1, putative [Aspergillus fumigatus A1163]
Length = 212
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 80/191 (41%), Gaps = 10/191 (5%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
++ + GK+ + ++G + ++K Q+S H + G D +QFAE +
Sbjct: 13 LLGITGKDFVILAASKAAMRGPTILKAEDDKTRQLSQHTLMAFSGEAGDTVQFAEYIQAN 72
Query: 69 TANYVASEQSPISPDTFAAIASWELYARKLTS--PLFINPIIAGFYPDSGEVFLSTLDMA 126
A Y + + P+ A EL AR L S P +N ++ G + E L +D
Sbjct: 73 VALYTMRNDTELRPNAVANFVRGEL-ARSLRSRNPYTVNLLLGGVDSITQEPHLYWIDYL 131
Query: 127 GCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQ---LFEVCSQVVIQACERDTKSGWG 183
R + A G AQ + I + P +S EQ L ++C+ + + D K G
Sbjct: 132 SALAR-VPYAAHGYAQYYCLSILDKHHHPDISLEQGMKLLQMCTDELKRRLPIDYK---G 187
Query: 184 ATVYVVEPDKV 194
V VV D V
Sbjct: 188 VLVKVVTKDGV 198
>gi|21465654|pdb|1IRU|M Chain M, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
gi|21465668|pdb|1IRU|1 Chain 1, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 213
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 96/212 (45%), Gaps = 18/212 (8%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN-KVHQMSPHLYLINPGLCADGMQFAE 63
+GG I+A+AG++ + D L +G F+I ++ K ++++ + G D + +
Sbjct: 8 NGGTILAIAGEDFAIVASDTRLSEG-FSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 66
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y S ++ AA+ S LY+R+ P ++ II G + G+ + +
Sbjct: 67 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFF-PYYVYNIIGGL-DEEGKGAVYSF 124
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPG-----------LSPEQLFEVCSQVVIQ 172
D G R + F AGGSA M+ + ++ Q G LS ++ + V I
Sbjct: 125 DPVGSYQRDS-FKAGGSASAMLQPLLDN--QVGFKNMQNVEHVPLSLDRAMRLVKDVFIS 181
Query: 173 ACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A ERD +G + +V + + ++ R D
Sbjct: 182 AAERDVYTGDALRICIVTKEGIREETVSLRKD 213
>gi|149731672|ref|XP_001503282.1| PREDICTED: proteasome subunit beta type-3-like [Equus caballus]
Length = 168
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 5/130 (3%)
Query: 75 SEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTD 134
+E S I P T ++ + LY ++ P + P+IA + FL +LD+ C D
Sbjct: 44 NEGSQIKPYTLMSVMANLLYKKQF-GPCYTEPVIAWLDLKTFTPFLCSLDLISCPVVTDD 102
Query: 135 FVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKV 194
FV + + G+ ES G L E SQ ++ A + D + + ++ E DK
Sbjct: 103 FVVSSTCAEQMCGMCESL---GAHHAHLLETVSQAMLNAVDGDA-ARCKSHFHLAEEDKT 158
Query: 195 TIRKIATRMD 204
T R + +MD
Sbjct: 159 TTRILKAQMD 168
>gi|349805257|gb|AEQ18101.1| putative proteasome beta 1 subunit [Hymenochirus curtipes]
Length = 205
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 91/208 (43%), Gaps = 12/208 (5%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
GG ++A+AG++ + D L +G + K ++++ + G AD + + +
Sbjct: 1 GGTVLALAGEDFAIVASDTRLSEGYSIHSRNTPKCYKLTDKTVIGCSGFHADCLTLTKII 60
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
R Y S ++ AA+ S LY+R+ P ++ II G + G+ + + D
Sbjct: 61 EARLKMYKHSNNKTMTSGAIAAMLSTILYSRRFF-PYYVYNIIGGL-DEEGKGAVYSFDP 118
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGE---------SFWQPGLSPEQLFEVCSQVVIQACER 176
G R + AGGSA M+ + + + Q L+ E+ ++ V I A ER
Sbjct: 119 VGSYQRDA-YKAGGSASAMLQPLLDNQIGYKNMPNAEQVPLTLEKAIKLVKDVFISATER 177
Query: 177 DTKSGWGATVYVVEPDKVTIRKIATRMD 204
D +G + +V + + ++ R D
Sbjct: 178 DVYTGDSLKISIVTKEGIREESLSLRKD 205
>gi|12653473|gb|AAH00508.1| Proteasome (prosome, macropain) subunit, beta type, 1 [Homo
sapiens]
gi|157928354|gb|ABW03473.1| proteasome (prosome, macropain) subunit, beta type, 1 [synthetic
construct]
gi|157928990|gb|ABW03780.1| proteasome (prosome, macropain) subunit, beta type, 1 [synthetic
construct]
Length = 241
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 94/210 (44%), Gaps = 14/210 (6%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN-KVHQMSPHLYLINPGLCADGMQFAE 63
+GG I+A+AG++ + D L +G F+I ++ K ++++ + G D + +
Sbjct: 36 NGGTILAIAGEDFAIVASDTRLSEG-FSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 94
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y S ++ AA+ S LY+R+ P ++ II G + G+ + +
Sbjct: 95 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFF-PYYVYNIIGGL-DEEGKGAVYSF 152
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGI---------GESFWQPGLSPEQLFEVCSQVVIQAC 174
D G R + F AGGSA M+ + ++ LS ++ + V I A
Sbjct: 153 DPVGSYQRDS-FKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAA 211
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G + +V + + ++ R D
Sbjct: 212 ERDVYTGDALRICIVTKEGIREETVSLRKD 241
>gi|389609037|dbj|BAM18130.1| proteasome 26kD subunit [Papilio xuthus]
Length = 232
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 87/212 (41%), Gaps = 16/212 (7%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG++VA+AG++ IG D L G + K+ ++S L G D +
Sbjct: 26 DNGGSVVAIAGEDYAVIGADTRLSTGFSIYTREQKKLFKLSERTVLGATGCWCDTLTLTR 85
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y ++ A + S LY ++ P +++ I+AG D S
Sbjct: 86 LLQARMQMYEHEHNKAMTTPAVAQMLSTMLYYKRFF-PYYVSNILAGLDADGKGCIYSYD 144
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLS-----------PEQLFEVCSQVVIQ 172
+ CE ++ + AGGSA + + ++ Q GL E+ + V I
Sbjct: 145 PIGHCE--RSTYRAGGSAGAQLQPLLDN--QIGLKNMQNVSEAPVPKEKALALLKDVFIS 200
Query: 173 ACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A ERD +G + ++ + + K R D
Sbjct: 201 AAERDIYTGDCIYIIIITANGIQEEKFELRKD 232
>gi|62897947|dbj|BAD96913.1| proteasome beta 1 subunit variant [Homo sapiens]
Length = 241
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 94/210 (44%), Gaps = 14/210 (6%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN-KVHQMSPHLYLINPGLCADGMQFAE 63
+GG I+A+AG++ + D L +G F+I ++ K ++++ + G D + +
Sbjct: 36 NGGTILAIAGEDFAIVASDTRLSEG-FSIHTRDSPKCYRLTDKTVIGCSGFHGDCLTLTK 94
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y S ++ AA+ S LY+R+ P ++ II G + G+ + +
Sbjct: 95 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFF-PYYVYNIIGGL-DEEGKGAVYSF 152
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGI---------GESFWQPGLSPEQLFEVCSQVVIQAC 174
D G R + F AGGSA M+ + ++ LS ++ + V I A
Sbjct: 153 DPVGSYQRDS-FKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAA 211
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G + +V + + ++ R D
Sbjct: 212 ERDVYTGDALRICIVTKEGIREETVSLRKD 241
>gi|343427158|emb|CBQ70686.1| probable PRE3-20S proteasome subunit (beta1) [Sporisorium reilianum
SRZ2]
Length = 222
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 76/189 (40%), Gaps = 8/189 (4%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
+N G +I+A+A +G D G + +K+ +S +Y G AD A
Sbjct: 17 VNLGTSIMAVAYDKGVILGADSRTTMGSYIANRVTDKLTHLSDRIYCCRSGSAADTQAIA 76
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGF-YPDSGEVFLS 121
+ +T Y SP P T A + ++ + L I+AG+ D G VF
Sbjct: 77 DIVTYYLDMYSVESDSP--PQTKVAASLFQEIVYQNKDRLSAGIIVAGWDKKDGGRVFNV 134
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
L G + + GGS I G ++ W+ G EQ E + A RD S
Sbjct: 135 PL---GGGVFEQPWAIGGSGSTYIYGYCDATWKAGWGKEQTLEFVKNALSLAMRRDGSS- 190
Query: 182 WGATVYVVE 190
G T+ +V+
Sbjct: 191 -GGTIRLVD 198
>gi|54696302|gb|AAV38523.1| proteasome (prosome, macropain) subunit, beta type, 1 [synthetic
construct]
gi|54696304|gb|AAV38524.1| proteasome (prosome, macropain) subunit, beta type, 1 [synthetic
construct]
gi|61367228|gb|AAX42969.1| proteasome subunit beta type 1 [synthetic construct]
gi|61367236|gb|AAX42970.1| proteasome subunit beta type 1 [synthetic construct]
Length = 242
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 94/210 (44%), Gaps = 14/210 (6%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN-KVHQMSPHLYLINPGLCADGMQFAE 63
+GG I+A+AG++ + D L +G F+I ++ K ++++ + G D + +
Sbjct: 36 NGGTILAIAGEDFAIVASDTRLSEG-FSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 94
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y S ++ AA+ S LY+R+ P ++ II G + G+ + +
Sbjct: 95 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFF-PYYVYNIIGGL-DEEGKGAVYSF 152
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGI---------GESFWQPGLSPEQLFEVCSQVVIQAC 174
D G R + F AGGSA M+ + ++ LS ++ + V I A
Sbjct: 153 DPVGSYQRDS-FKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAA 211
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G + +V + + ++ R D
Sbjct: 212 ERDVYTGDALRICIVTKEGIREETVSLRKD 241
>gi|342181371|emb|CCC90850.1| putative proteasome beta-1 subunit [Trypanosoma congolense IL3000]
Length = 282
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 79/198 (39%), Gaps = 7/198 (3%)
Query: 2 SLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQF 61
S + G I+A++ + D G + + NK+ ++S +Y G AD
Sbjct: 50 SFSLGTTIMAVSFDGGVILAADSRTSSGTYVVNRASNKLTKLSKKIYCCRSGSAADTQAL 109
Query: 62 AEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLS 121
AE Y A P++ + A I Y + I I+AG+ +G S
Sbjct: 110 AELTANYLEGYEADTSRPVNVASAANIFKKLCYMNRWAISAGI--IVAGYDSVNGGSVYS 167
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
C K D+ GGS + ++ ++PG++ ++ +C + V A RD SG
Sbjct: 168 IPSGGSCV--KLDYALGGSGSIFLYSFFDANYKPGMTKDECIRLCQRAVAHAYSRDGSSG 225
Query: 182 WGATVYVV---EPDKVTI 196
V+ EP+ T+
Sbjct: 226 GLIRTIVLHEGEPEDTTV 243
>gi|4506193|ref|NP_002784.1| proteasome subunit beta type-1 [Homo sapiens]
gi|114610308|ref|XP_001140101.1| PREDICTED: proteasome subunit beta type-1 isoform 4 [Pan
troglodytes]
gi|332825501|ref|XP_003311646.1| PREDICTED: proteasome subunit beta type-1 [Pan troglodytes]
gi|397502108|ref|XP_003821710.1| PREDICTED: proteasome subunit beta type-1 isoform 1 [Pan paniscus]
gi|397502110|ref|XP_003821711.1| PREDICTED: proteasome subunit beta type-1 isoform 2 [Pan paniscus]
gi|397502112|ref|XP_003821712.1| PREDICTED: proteasome subunit beta type-1 isoform 3 [Pan paniscus]
gi|130853|sp|P20618.2|PSB1_HUMAN RecName: Full=Proteasome subunit beta type-1; AltName:
Full=Macropain subunit C5; AltName: Full=Multicatalytic
endopeptidase complex subunit C5; AltName:
Full=Proteasome component C5; AltName: Full=Proteasome
gamma chain; Flags: Precursor
gi|220026|dbj|BAA00658.1| proteasome subunit C5 [Homo sapiens]
gi|18088777|gb|AAH20807.1| Proteasome (prosome, macropain) subunit, beta type, 1 [Homo
sapiens]
gi|54696306|gb|AAV38525.1| proteasome (prosome, macropain) subunit, beta type, 1 [Homo
sapiens]
gi|61357229|gb|AAX41355.1| proteasome subunit beta type 1 [synthetic construct]
gi|197692325|dbj|BAG70126.1| proteasome beta 1 subunit [Homo sapiens]
gi|197692585|dbj|BAG70256.1| proteasome beta 1 subunit [Homo sapiens]
gi|261860708|dbj|BAI46876.1| proteasome (prosome, macropain) subunit, beta type, 1 [synthetic
construct]
gi|410210668|gb|JAA02553.1| proteasome (prosome, macropain) subunit, beta type, 1 [Pan
troglodytes]
gi|410259166|gb|JAA17549.1| proteasome (prosome, macropain) subunit, beta type, 1 [Pan
troglodytes]
gi|410301642|gb|JAA29421.1| proteasome (prosome, macropain) subunit, beta type, 1 [Pan
troglodytes]
gi|410335833|gb|JAA36863.1| proteasome (prosome, macropain) subunit, beta type, 1 [Pan
troglodytes]
Length = 241
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 94/210 (44%), Gaps = 14/210 (6%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN-KVHQMSPHLYLINPGLCADGMQFAE 63
+GG I+A+AG++ + D L +G F+I ++ K ++++ + G D + +
Sbjct: 36 NGGTILAIAGEDFAIVASDTRLSEG-FSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 94
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y S ++ AA+ S LY+R+ P ++ II G + G+ + +
Sbjct: 95 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFF-PYYVYNIIGGL-DEEGKGAVYSF 152
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGI---------GESFWQPGLSPEQLFEVCSQVVIQAC 174
D G R + F AGGSA M+ + ++ LS ++ + V I A
Sbjct: 153 DPVGSYQRDS-FKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAA 211
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G + +V + + ++ R D
Sbjct: 212 ERDVYTGDALRICIVTKEGIREETVSLRKD 241
>gi|327357407|gb|EGE86264.1| proteasome subunit beta type [Ajellomyces dermatitidis ATCC 18188]
Length = 231
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 83/198 (41%), Gaps = 7/198 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
+N G +I+A+ K+ +G D G + +K+ Q+ ++ G AD A
Sbjct: 27 VNLGTSIMAINFKDGVILGADSRTTTGAYIANRVTDKLTQVHDTIWCCRSGSAADTQAVA 86
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSGEVFLS 121
+ ++ Y Q P + T AA+ Y K L IIAG+ P G+V+
Sbjct: 87 DIVSYHLGMYGVVNQEPPTTQTAAALFQELCYDNK--DMLSAGIIIAGYDPRHGGQVYSI 144
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
L G K + GGS I G ++ W+ G++ E+ E + +A + D SG
Sbjct: 145 PL---GGSLHKQSYAIGGSGSTYIYGYCDAKWREGMTEEEGIEFVKTSLQEAIKWDGSSG 201
Query: 182 WGATVYVVEPDKVTIRKI 199
G VV K +R +
Sbjct: 202 -GVIRMVVLTAKGAVRHL 218
>gi|225703310|gb|ACO07501.1| Proteasome subunit beta type 1-A [Oncorhynchus mykiss]
Length = 237
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 89/209 (42%), Gaps = 12/209 (5%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG ++A+AG++ + D L +G + K ++++ + G D + +
Sbjct: 32 NGGTVLAVAGEDFAIVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGSHGDCLTLTKI 91
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y S ++ AA+ S LY R+ P ++ II G + G+ + + D
Sbjct: 92 IDARLKMYKHSNNKCMTSGAIAAMLSTILYGRRFF-PYYVYNIIGGL-DEEGKGAVYSFD 149
Query: 125 MAGCETRKTDFVAGGSAQNMIM-----GIG----ESFWQPGLSPEQLFEVCSQVVIQACE 175
G R T + AGGSA M+ IG E LS E+ ++ V I A E
Sbjct: 150 PVGPYQRDT-YKAGGSASAMLQPLLDNQIGFKNMEGVQHLPLSQEKAVQLVKDVFISAAE 208
Query: 176 RDTKSGWGATVYVVEPDKVTIRKIATRMD 204
RD +G + +V D + + R D
Sbjct: 209 RDVYTGDALRICIVTKDGIKEETVPLRKD 237
>gi|354610751|ref|ZP_09028707.1| proteasome endopeptidase complex, beta subunit [Halobacterium sp.
DL1]
gi|353195571|gb|EHB61073.1| proteasome endopeptidase complex, beta subunit [Halobacterium sp.
DL1]
Length = 239
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 67/166 (40%), Gaps = 7/166 (4%)
Query: 29 GDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAI 88
G + KV Q+ P G QF + Y ++ + +
Sbjct: 69 GRLVTNKRTQKVEQLHPTAAAGLSGAVGHIQQFVRLLQAEARLYENRRSEELTMTALSTL 128
Query: 89 ASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGI 148
A L ++PL + P++ G D G VF +LD G T + AGGS + G+
Sbjct: 129 AGNVLR----SAPLQVTPLLGGVDEDGGHVF--SLDGGGGVLSDT-YAAGGSGMQIAYGV 181
Query: 149 GESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKV 194
E + LS ++ V +Q + A ERDT SG G TV + + V
Sbjct: 182 LEQQYDDALSAKEGRAVAAQAIDSASERDTASGNGLTVATITSEGV 227
>gi|296242983|ref|YP_003650470.1| proteasome endopeptidase complex subunit beta [Thermosphaera
aggregans DSM 11486]
gi|296095567|gb|ADG91518.1| proteasome endopeptidase complex, beta component [Thermosphaera
aggregans DSM 11486]
Length = 206
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 74/158 (46%), Gaps = 3/158 (1%)
Query: 38 NKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARK 97
K+ +++P+ + GL AD E +Y IS D A+ S L A
Sbjct: 39 RKIMEITPYAAMTISGLVADAQFLVENAKYIAKDYELKMGKRISIDALASRISLILSAYL 98
Query: 98 LTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGL 157
SP + ++ G + +++ +D+ G +R+ F++ GS + G+ E ++ GL
Sbjct: 99 RFSPFIVQLLLGGVDHEGPKLYY--MDLYGSVSRER-FMSTGSGSPVAFGVLEQGYREGL 155
Query: 158 SPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVT 195
+ E+ E+ + V A RD+ +G G + V+ P+ ++
Sbjct: 156 TLEEAKELAFKAVSSAIMRDSFTGEGVDIVVIGPEGIS 193
>gi|395645475|ref|ZP_10433335.1| proteasome endopeptidase complex, beta subunit [Methanofollis
liminatans DSM 4140]
gi|395442215|gb|EJG06972.1| proteasome endopeptidase complex, beta subunit [Methanofollis
liminatans DSM 4140]
Length = 212
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 73/165 (44%), Gaps = 3/165 (1%)
Query: 29 GDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAI 88
G ++ KV+Q++ + + G D A M + + Y PIS A +
Sbjct: 34 GTLIASKTAKKVYQIADRIGMTTAGGVGDAQSLARLMQVECSLYKVRHGKPISVGAAATL 93
Query: 89 ASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGI 148
S L + P ++ ++ G + V+ ++D G +++TD V+ GS M G+
Sbjct: 94 LSNYLQQNRYY-PYYVQLLVGGVDRNGPSVY--SVDAMGGASKETDIVSTGSGSPMAYGV 150
Query: 149 GESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDK 193
E + ++ + ++ ++ + A RD+ SG ++ V+ DK
Sbjct: 151 LEDRYHADMNEPEAVDLATRSLKAAMRRDSASGENISIVVITRDK 195
>gi|340716619|ref|XP_003396794.1| PREDICTED: proteasome subunit beta type-1-like [Bombus terrestris]
Length = 236
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 85/210 (40%), Gaps = 12/210 (5%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG+++A+AG + I D L G + K+ +S L G D +
Sbjct: 30 DNGGSVIALAGDDFCVIAADTRLSTGFSIYTREQQKLFPLSSKTILGCSGCWCDTLTLTR 89
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
++ R Y Q + A + S LY ++ P +++ I+ G D S
Sbjct: 90 LLSARMQMYEHEHQKEMPTLAVAQMLSTMLYYKRFF-PYYVSNILGGLDEDGKGCVYSYD 148
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFW----QPGLSP-----EQLFEVCSQVVIQAC 174
+ CE T + AGGSA ++ + ++ Q G+ P E+ + V I A
Sbjct: 149 PIGHCEV--TKYRAGGSAGALLQPLLDNQIGYKNQEGVEPVPLTQEKAVAIIKDVFISAA 206
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G ++ ++ D + R D
Sbjct: 207 ERDIYTGDSISIKIITKDGIQDSTFELRKD 236
>gi|350396993|ref|XP_003484732.1| PREDICTED: proteasome subunit beta type-1-like [Bombus impatiens]
Length = 236
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 85/210 (40%), Gaps = 12/210 (5%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG+++A+AG + I D L G + K+ +S L G D +
Sbjct: 30 DNGGSVIALAGDDFCVIAADTRLSTGFSIYTREQQKLFPLSSKTILGCSGCWCDTLTLTR 89
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
++ R Y Q + A + S LY ++ P +++ I+ G D S
Sbjct: 90 LLSARMQMYEHEHQKEMPTLAVAQMLSTMLYYKRFF-PYYVSNILGGLDEDGKGCVYSYD 148
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFW----QPGLSP-----EQLFEVCSQVVIQAC 174
+ CE T + AGGSA ++ + ++ Q G+ P E+ + V I A
Sbjct: 149 PIGHCEV--TKYRAGGSAGALLQPLLDNQIGYKNQEGVEPIPLTQEKAVAIIKDVFISAA 206
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G ++ ++ D + R D
Sbjct: 207 ERDIYTGDSISIKIITKDGIQDSTFELRKD 236
>gi|56758256|gb|AAW27268.1| SJCHGC09410 protein [Schistosoma japonicum]
gi|226489270|emb|CAX75779.1| proteasome (prosome, macropain) subunit, beta type, 1 [Schistosoma
japonicum]
gi|226489272|emb|CAX75780.1| proteasome (prosome, macropain) subunit, beta type, 1 [Schistosoma
japonicum]
gi|226489274|emb|CAX75781.1| proteasome (prosome, macropain) subunit, beta type, 1 [Schistosoma
japonicum]
Length = 212
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 86/215 (40%), Gaps = 23/215 (10%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGL---CA---- 56
++GG ++ ++G + I D L GDF I + + P L+ + G CA
Sbjct: 7 SNGGTVMGISGNDFALIASDTRLCDGDFVI------LSRNCPRLFKLGRGNVLGCAGFHG 60
Query: 57 DGMQFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSG 116
D + + + + Y IS A + S LY R+ P +++ I+ G D G
Sbjct: 61 DVLTLTKLLENKVKTYRYDHGKDISTKALAGLLSVSLYNRRFF-PFYVSNILVGLDGDRG 119
Query: 117 EVFLSTLDMAGCETRKTDFVAGGSA-------QNMIMGIGESFWQPGLSPEQLFEVCSQV 169
++ + D G + +G SA + + + L+ E ++ +
Sbjct: 120 VLY--SYDPVGSYEAEGYRASGSSAAILQPFLDSTVGNKTSKYHVSRLNKETAVKLTHDI 177
Query: 170 VIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
I A ERDT+ G G +Y V D ++ R D
Sbjct: 178 FISAAERDTQCGDGVVIYTVTKDGLSETSYPLRRD 212
>gi|347522758|ref|YP_004780328.1| proteasome endopeptidase complex subunit beta [Pyrolobus fumarii
1A]
gi|343459640|gb|AEM38076.1| proteasome endopeptidase complex, beta subunit [Pyrolobus fumarii
1A]
Length = 211
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 83/185 (44%), Gaps = 4/185 (2%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G V + K+ + + + G F +++ KV +++ + + GL AD A +
Sbjct: 9 GATTVGIRVKDGVVLASEKRVSYGGFIVSKAGKKVFKVTDRIGIAFAGLYADMQALARIL 68
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
+ Y S P A + S LYA KL FI ++ G ++G L +D
Sbjct: 69 SAEIQYYEVSTGKPARVYAAAKLLSNILYASKLIP--FITEVLVGGVDETGS-HLYVMDP 125
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
G + D+ A GS + +GI E+ ++ +S ++ E+ + V A ERD SG G
Sbjct: 126 VGSVI-EDDYAALGSGAAIAIGILEANYRKDMSIDEAKELAEKAVRIAIERDAISGDGID 184
Query: 186 VYVVE 190
+ V++
Sbjct: 185 ILVIK 189
>gi|226489268|emb|CAX75778.1| proteasome (prosome, macropain) subunit, beta type, 1 [Schistosoma
japonicum]
Length = 212
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 86/215 (40%), Gaps = 23/215 (10%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGL---CA---- 56
++GG ++ ++G + I D L GDF I + + P L+ + G CA
Sbjct: 7 SNGGTVMGISGNDFALIASDTRLCDGDFVI------LSRNCPRLFKLGRGNVLGCAGFHG 60
Query: 57 DGMQFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSG 116
D + + + + Y IS A + S LY R+ P +++ I+ G D G
Sbjct: 61 DVLTLTKLLENKVKTYRYDHGKDISTKALAGLLSVSLYNRRFF-PFYVSNILVGLDGDRG 119
Query: 117 EVFLSTLDMAGCETRKTDFVAGGSA-------QNMIMGIGESFWQPGLSPEQLFEVCSQV 169
++ + D G + +G SA + + + L+ E ++ +
Sbjct: 120 VLY--SYDPVGSYEAEGYRASGSSAAILQPFLDSTVGNKTSKYHVSRLNKETAVKLTHDI 177
Query: 170 VIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
I A ERDT+ G G +Y V D ++ R D
Sbjct: 178 FISAAERDTQCGDGVVIYTVTKDGLSETSYPLRRD 212
>gi|330834117|ref|YP_004408845.1| proteasome endopeptidase complex [Metallosphaera cuprina Ar-4]
gi|329566256|gb|AEB94361.1| proteasome endopeptidase complex [Metallosphaera cuprina Ar-4]
Length = 217
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 84/195 (43%), Gaps = 7/195 (3%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G V + K+ + D G F + K+ + + + G AD +QF
Sbjct: 23 GTTTVGLVAKDSVVLAADRRASAGFFVANKMVRKIVYIDDRIGMTTAGSVAD-LQFIYNY 81
Query: 66 TLRTANY-VASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+Y V S P++ + A + L K P + +I G+ + L LD
Sbjct: 82 MKNIYHYNVISGNRPVTVKSLATYLTNVLSQSKYF-PYLVQILIGGY---DTQPRLFNLD 137
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G T +T +VA GS + MG+ E ++P LS E+ ++ ++ V+ A +RD+ +G G
Sbjct: 138 YLGDMTEET-YVATGSGSPVAMGVLEDGYRPDLSGEEAMDLGARAVLSAIKRDSFTGTGV 196
Query: 185 TVYVVEPDKVTIRKI 199
V + D R+I
Sbjct: 197 IVTKLSKDGHVEREI 211
>gi|226471340|emb|CAX70751.1| proteasome (prosome, macropain) subunit, beta type, 1 [Schistosoma
japonicum]
Length = 212
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 83/209 (39%), Gaps = 11/209 (5%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYE-NKVHQMSPHLYLINPGLCADGMQFA 62
++GG ++ ++G + I D L GDF I ++ ++ L G D +
Sbjct: 7 SNGGTVMGISGNDFALIASDTRLCDGDFVILSRNCPRLFKLGRGNVLGYAGFHGDVLTLT 66
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLST 122
+ + + Y IS A + S LY R+ P +++ I+ G D G ++ +
Sbjct: 67 KLLENKVKTYRYDHGKDISTKALAGLLSVSLYNRRFF-PFYVSNILVGLDGDRGVLY--S 123
Query: 123 LDMAGCETRKTDFVAGGSA-------QNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACE 175
D G + +G SA + + + L+ E ++ + I A E
Sbjct: 124 YDPVGSYEAEGYRASGSSAAILQPFLDSTVGNKTSKYHVSRLNKETAVKLTHDIFISAAE 183
Query: 176 RDTKSGWGATVYVVEPDKVTIRKIATRMD 204
RDT+ G G +Y V D ++ R D
Sbjct: 184 RDTQCGDGVVIYTVTKDGLSETSYPLRRD 212
>gi|389611001|dbj|BAM19111.1| proteasome 26kD subunit [Papilio polytes]
Length = 232
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 86/212 (40%), Gaps = 16/212 (7%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG++VA+AG + IG D L G + K+ ++S L G D +
Sbjct: 26 DNGGSVVAIAGDDYAVIGADTRLSTGFSIYTREQKKLFKLSERTVLGATGCWCDTLTLTR 85
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y ++ A + S LY ++ P +++ I+AG D S
Sbjct: 86 LLQARMQMYEHEHNKAMTTPAVAQMLSTMLYYKRFF-PYYVSNILAGLDADGKGCIYSYD 144
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLS-----------PEQLFEVCSQVVIQ 172
+ CE ++ + AGGSA + + ++ Q GL E+ + V I
Sbjct: 145 PIGHCE--RSTYRAGGSAGAQLQPLLDN--QIGLKNMQNVTEAPVPKEKALALLKDVFIS 200
Query: 173 ACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A ERD +G + ++ + + K R D
Sbjct: 201 AAERDIYTGDCIYIIIITANGIQEEKFELRKD 232
>gi|219127992|ref|XP_002184208.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404439|gb|EEC44386.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 187
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 81/187 (43%), Gaps = 8/187 (4%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE-- 63
G +VA+ + +G D + + +K+ ++ H L+ G AD Q AE
Sbjct: 2 GTTLVAIKYRGGVVVGADSRTSVSGYVSHRFAHKIAPLTDHTVLLRSGSAADTQQIAESA 61
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASW-ELYARKLTSPLFINPIIAGFYPDSGEVFLST 122
+MT Y + I P T + +A W + ++ ++ ++AGF P+S + + +
Sbjct: 62 RMTFLHRRY----RCGIVP-TVSQVAHWIRSTVYEESTEGVVSLLVAGFDPESLKSRIFS 116
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGW 182
+ +G + F GS ++G + LS + E+C + + A +RD SG
Sbjct: 117 VSPSGALIEEKTFAVSGSGSTYVLGYLDHHVSGDLSENEAIELCQKAIELAIDRDGSSGG 176
Query: 183 GATVYVV 189
+ V+
Sbjct: 177 RFNIIVI 183
>gi|209732446|gb|ACI67092.1| Proteasome subunit beta type-1-A [Salmo salar]
Length = 237
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 89/209 (42%), Gaps = 12/209 (5%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG ++A+AG++ + D L +G + K ++++ + G D + +
Sbjct: 32 NGGTVLAVAGEDFAIVASDTRLSEGYSIHSRDSPKCYKLTNTTVIGCSGFHGDCLTLTKI 91
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y S ++ AA+ S LY R+ P ++ II G + G+ + + D
Sbjct: 92 IDARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFF-PYYVYNIIGGL-DEEGKGAVYSFD 149
Query: 125 MAGCETRKTDFVAGGSAQNMIM-----GIG----ESFWQPGLSPEQLFEVCSQVVIQACE 175
G R T + AGGSA M+ IG E L+ E+ ++ V I A E
Sbjct: 150 PVGSYQRDT-YKAGGSASAMLQPLLDNQIGFKNMEGVQHLPLNQEKAVQLVKDVFISAAE 208
Query: 176 RDTKSGWGATVYVVEPDKVTIRKIATRMD 204
RD +G + +V + + + R D
Sbjct: 209 RDVYTGDALRICIVTKEGIKEETVPLRKD 237
>gi|390463598|ref|XP_003733064.1| PREDICTED: LOW QUALITY PROTEIN: proteasome subunit beta type-3
[Callithrix jacchus]
Length = 116
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 3/111 (2%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GKNC AI D +Q +++ K+ M LY+ GL D
Sbjct: 4 MSYN-GGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAG 110
A+++ R Y E I P T ++ + LY ++ ++ G
Sbjct: 62 TVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPTTLSQSLLGG 112
>gi|335955152|gb|AEH76582.1| proteasome subunit beta type [Epinephelus bruneus]
Length = 225
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 91/209 (43%), Gaps = 12/209 (5%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG ++A+AG++ + D L +G + K ++++ + G D + +
Sbjct: 20 NGGTVLAVAGEDFAIVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDCLTLTKI 79
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y S ++ AA+ S LY R+ P ++ II G + G+ + + D
Sbjct: 80 IDARLKMYKHSNNKTMTCGAIAAMLSTILYGRRFF-PYYVYNIIGGL-DEEGKGAVYSFD 137
Query: 125 MAGCETRKTDFVAGGSAQNMIM-----GIG----ESFWQPGLSPEQLFEVCSQVVIQACE 175
G R T + AGGSA M+ IG E L+ ++ ++ V I A E
Sbjct: 138 PVGSYQRDT-YKAGGSASAMLQPLLDNQIGFKNMEGVQHVPLTQDKAVQLVKDVFISAAE 196
Query: 176 RDTKSGWGATVYVVEPDKVTIRKIATRMD 204
RD +G + ++ + ++ + I R D
Sbjct: 197 RDVYTGDALRICIINKEGISEQTIPLRKD 225
>gi|345318445|ref|XP_001517317.2| PREDICTED: proteasome subunit beta type-3-like [Ornithorhynchus
anatinus]
Length = 106
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%)
Query: 159 PEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
PE LFE SQ ++ A +RD SG G V+V+E +K+T R + RMD
Sbjct: 61 PEHLFETISQAMLNAVDRDAVSGMGVVVHVIEKNKITTRTLKARMD 106
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCAD 57
MS N GGA++AM GKNC AI D +Q +++ K+ M LY+ GL D
Sbjct: 1 MSYN-GGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQ-KIFPMGDRLYIGLAGLATD 56
>gi|417397679|gb|JAA45873.1| Putative 20s proteasome regulatory subunit beta type psmb1/pre7
[Desmodus rotundus]
Length = 240
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 93/210 (44%), Gaps = 14/210 (6%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN-KVHQMSPHLYLINPGLCADGMQFAE 63
+GG I+A+AG++ + D L +G F+I ++ K ++++ + G D + +
Sbjct: 35 NGGTILAIAGEDFSIVASDTRLSEG-FSIHSRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 93
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y S ++ AA+ S LY+R+ P ++ II G + G+ + +
Sbjct: 94 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFF-PYYVYNIIGGL-DEEGKGAVYSF 151
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGI---------GESFWQPGLSPEQLFEVCSQVVIQAC 174
D G R + F AGGSA M+ + ++ L+ ++ + V I A
Sbjct: 152 DPVGSYQRDS-FKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLTLDRAMRLVKDVFISAA 210
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G + +V D + + R D
Sbjct: 211 ERDVYTGDTLKICIVTKDGIREETVPLRRD 240
>gi|429216737|ref|YP_007174727.1| proteasome endopeptidase complex subunit beta [Caldisphaera
lagunensis DSM 15908]
gi|429133266|gb|AFZ70278.1| proteasome endopeptidase complex, archaeal, beta subunit
[Caldisphaera lagunensis DSM 15908]
Length = 207
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 83/186 (44%), Gaps = 3/186 (1%)
Query: 7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMT 66
G + + K+ + D + G F ++ KV+ ++ + + GL AD M
Sbjct: 8 GTALGIKAKDGVVLATDKRMSYGSFIMSRNAKKVYLLNDRVGIALTGLYADVSGLVRIMN 67
Query: 67 LRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMA 126
+ Y + ++ +S + + S LY+ K+ P I II G D G+ + TLD
Sbjct: 68 AEISYYETTNETTMSLYAISKLFSNILYSYKML-PFLIESIIGGLDRD-GKPKIYTLDAL 125
Query: 127 GCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATV 186
G T + ++A GS +G+ E + L+ ++ ++ + ERD+ SG G +
Sbjct: 126 GSVT-EDKYMAVGSGGTTALGVLEYSYNDNLTIDEAEKIAITALKTTMERDSSSGDGIDL 184
Query: 187 YVVEPD 192
+++ +
Sbjct: 185 LIIKSE 190
>gi|336121951|ref|YP_004576726.1| proteasome endopeptidase complex subunit beta [Methanothermococcus
okinawensis IH1]
gi|334856472|gb|AEH06948.1| proteasome endopeptidase complex, beta subunit [Methanothermococcus
okinawensis IH1]
Length = 220
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 80/191 (41%), Gaps = 2/191 (1%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G + M K+ + D G+ + K++++ ++ + G D +
Sbjct: 13 GTTTIGMVCKDGVVLATDKRATMGNLIADKEAKKLYKIDDYIAMTIAGSVGDAQSLVRMI 72
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
+ T Y + + P + A + S L+ + P II G+ G S LD
Sbjct: 73 SAETKIYKMRTGNNMPPHSCATLLSNILHGNR-HFPFLTQLIIGGYDNLHGPKLFS-LDP 130
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
G +T F + GS +G+ E+ ++ ++ + E+ + +I A ERD SG G +
Sbjct: 131 VGGLNEETSFTSTGSGSPTALGVLEAEYKKDMTINKGKELAVKALISAMERDAYSGNGIS 190
Query: 186 VYVVEPDKVTI 196
+ V++ + V I
Sbjct: 191 LAVIDENGVKI 201
>gi|148684144|gb|EDL16091.1| mCG13231, isoform CRA_a [Mus musculus]
Length = 112
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 3/101 (2%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GKNC AI D +Q +++ K+ M LY+ GL D
Sbjct: 4 MSYN-GGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTS 100
A+++ R Y E I P T ++ + LY +++ +
Sbjct: 62 TVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRIQN 102
>gi|448365027|ref|ZP_21553597.1| proteasome endopeptidase complex subunit beta [Natrialba aegyptia
DSM 13077]
gi|445656698|gb|ELZ09531.1| proteasome endopeptidase complex subunit beta [Natrialba aegyptia
DSM 13077]
Length = 243
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 67/156 (42%), Gaps = 8/156 (5%)
Query: 29 GDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAI 88
G F + KV Q+ P L G F + Y A P+S D A +
Sbjct: 72 GRFVSNKNVQKVEQIHPTGALTMVGSVGGAQSFISSLRAEVNLYEARRGEPMSIDALATL 131
Query: 89 ASWELYARKLTSPLF-INPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMG 147
A +AR P F I+PI+ G + V+ ++D AG + D+ GS + G
Sbjct: 132 AGN--FARG--GPFFAIHPILGGVDSEGSHVY--SIDPAGG-VMEDDYTVTGSGMQLAYG 184
Query: 148 IGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWG 183
+ E ++ GLS + + ++ + A ERDT SG G
Sbjct: 185 LLEQEYEDGLSNDDATTIAARAIKSAAERDTGSGNG 220
>gi|408404298|ref|YP_006862281.1| proteasome subunit beta [Candidatus Nitrososphaera gargensis Ga9.2]
gi|408364894|gb|AFU58624.1| proteasome, subunit beta [Candidatus Nitrososphaera gargensis
Ga9.2]
Length = 201
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 85/185 (45%), Gaps = 7/185 (3%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G +V ++ N + + + G+F + + K ++ H+ G+ AD MQ +
Sbjct: 8 GATVVGISYNNGVILAAEKRVSFGNFVVNKNIKKTFSVTDHVGAACAGMVAD-MQVLVRQ 66
Query: 66 TLRTANYVASE-QSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
A E + ++P++ A + S ++ R+ PL I+ G E++ TLD
Sbjct: 67 VEALAKIRKLETRRDVAPNSIAKLMSVIMFERRYF-PLLTQVIVGGINTKP-EIY--TLD 122
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G D+ A G+ M +GI ++ ++P ++ E+ E+ + + A +RD SG G
Sbjct: 123 PLGS-VLPDDYAAVGTGAEMALGIMDAEFKPNMTEEKAKELAVRAIRSAIQRDAASGDGI 181
Query: 185 TVYVV 189
V VV
Sbjct: 182 DVLVV 186
>gi|329764912|ref|ZP_08256501.1| proteasome endopeptidase complex [Candidatus Nitrosoarchaeum limnia
SFB1]
gi|393795409|ref|ZP_10378773.1| proteasome endopeptidase complex protein [Candidatus
Nitrosoarchaeum limnia BG20]
gi|329138581|gb|EGG42828.1| proteasome endopeptidase complex [Candidatus Nitrosoarchaeum limnia
SFB1]
Length = 195
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 86/193 (44%), Gaps = 13/193 (6%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G V + ++ + + + G+F +++ K ++P + GL AD MQ +
Sbjct: 5 GATAVGITFQDGIVLASEKRIAFGNFLVSKTTKKTFPITPKVGATCAGLVAD-MQI---L 60
Query: 66 TLRTANYVASEQ----SPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLS 121
TL+ A + + P+T A + S +Y R+ PL I+ G + L
Sbjct: 61 TLQIAALAKIRKMELKRDVPPNTIAKMMSNMMYERRY-FPLLTQVIVGGII---DKPILF 116
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
TLD G ++ A G+ M +G+ + ++P ++ E+ ++ + V A RD+ SG
Sbjct: 117 TLDPLGS-VLPDEYAAVGTGAEMALGVLDPQFKPNMTQEEAIDLAKRAVRSAALRDSASG 175
Query: 182 WGATVYVVEPDKV 194
G V V+ D +
Sbjct: 176 DGLDVLVITKDGI 188
>gi|449278062|gb|EMC86029.1| Proteasome subunit beta type-1 [Columba livia]
Length = 237
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 89/209 (42%), Gaps = 12/209 (5%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG ++A+AG++ + D L +G K ++++ + G D + +
Sbjct: 32 NGGTVLAIAGEDFSLVASDTRLSEGYAIHCRDSPKCYKLTERTVIGCSGFHGDCLTLTKI 91
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y S ++ AA+ S LY+R+ P ++ II G + G+ + + D
Sbjct: 92 IEARLKMYKHSNNKTMTTGAIAAMLSTILYSRRFF-PYYVYNIIGGL-DEEGKGAVYSFD 149
Query: 125 MAGCETRKTDFVAGGSAQNMIM-----GIG----ESFWQPGLSPEQLFEVCSQVVIQACE 175
G R + F A GSA M+ IG ++ L+ E+ ++ V I A E
Sbjct: 150 PVGSYQRDS-FKAAGSASAMLQPLLDNQIGFKNMQNVEHLPLTLEKALQLVKDVFISAAE 208
Query: 176 RDTKSGWGATVYVVEPDKVTIRKIATRMD 204
RD +G + +V D + + R D
Sbjct: 209 RDVYTGDALKICIVTKDGIKEETVQLRKD 237
>gi|72537676|gb|AAZ73764.1| 20S proteasome beta subunit [Cirrhinus molitorella]
Length = 237
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 90/209 (43%), Gaps = 12/209 (5%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG ++A+AG++ + D L +G + K ++++ L G D + +
Sbjct: 32 NGGTVLAVAGEDFAIVASDTRLSEGYSIHSRDSPKCYKLTDTTVLGCSGFHGDCLTLTKI 91
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y S ++ AA+ S LY R+ P ++ II G + G + + D
Sbjct: 92 IDARLKMYKHSNNKTMTSGAIAAMLSTILYGRRFF-PYYVYNIIGGL-DEEGRGAVYSFD 149
Query: 125 MAGCETRKTDFVAGGSAQNMIM-----GIG----ESFWQPGLSPEQLFEVCSQVVIQACE 175
G R T + AGGSA M+ IG E+ + L+ E+ ++ V I A E
Sbjct: 150 PVGSYQRDT-YKAGGSASAMLQPLLDNQIGFKNMENVEEVPLTLEKAVQLVKDVFISAAE 208
Query: 176 RDTKSGWGATVYVVEPDKVTIRKIATRMD 204
RD +G + ++ + + + R D
Sbjct: 209 RDVYTGDALEICIITKEGIREEIVPLRKD 237
>gi|401402253|ref|XP_003881203.1| hypothetical protein NCLIV_042370 [Neospora caninum Liverpool]
gi|325115615|emb|CBZ51170.1| hypothetical protein NCLIV_042370 [Neospora caninum Liverpool]
Length = 246
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 91/196 (46%), Gaps = 13/196 (6%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTI-AEYENKVHQMSPHLYLINPGLCADGMQF 61
+N+GG +V +AG++ FA+ V + F+I + +++K+ +++ + L G+ AD
Sbjct: 40 VNNGGTVVCVAGED-FAVAVGDTRLSTGFSIYSRFQSKITKLTDKVVLATSGMQADKTTL 98
Query: 62 AEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLS 121
+ +R Y + P S + A + S LY+R+ P + ++ G ++G+ +
Sbjct: 99 HNLLQIRIEQYTHQHRHPPSLNAIAQLLSTMLYSRRFF-PFYTFNVLCGI-DENGKGAVY 156
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGI--------GESFWQPGLSPEQLFEVCSQVVIQA 173
D G + G+ ++IM + + + L+ EQ+ ++ V A
Sbjct: 157 GYDAIG-SFEAARYNCAGTGAHLIMPVLDNQISRNNQQGEKAPLTREQVVDIIKSAVASA 215
Query: 174 CERDTKSGWGATVYVV 189
ERD +G A V ++
Sbjct: 216 GERDIFTGDQAEVVMI 231
>gi|402868791|ref|XP_003898471.1| PREDICTED: proteasome subunit beta type-1 [Papio anubis]
Length = 241
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 93/210 (44%), Gaps = 14/210 (6%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN-KVHQMSPHLYLINPGLCADGMQFAE 63
+GG ++A+AG++ + D L +G F+I ++ K ++++ + G D + +
Sbjct: 36 NGGTVLAIAGEDFAIVASDTRLSEG-FSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 94
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y S ++ AA+ S LY+R+ P ++ II G + G+ + +
Sbjct: 95 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFF-PYYVYNIIGGL-DEEGKGAVYSF 152
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGI---------GESFWQPGLSPEQLFEVCSQVVIQAC 174
D G R + F AGGSA M+ + ++ LS ++ + V I A
Sbjct: 153 DPVGSYQRDS-FKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAA 211
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G + +V + + I R D
Sbjct: 212 ERDVYTGDALRICIVTKEGIREETIPLRKD 241
>gi|296483812|tpg|DAA25927.1| TPA: proteasome beta 1 subunit precursor [Bos taurus]
Length = 241
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 93/210 (44%), Gaps = 14/210 (6%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN-KVHQMSPHLYLINPGLCADGMQFAE 63
+GG ++A+AG++ + D L +G F+I ++ K ++++ + G D + +
Sbjct: 36 NGGTVLAIAGEDFSIVASDTRLSEG-FSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 94
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y S ++ AA+ S LY+R+ P ++ II G + G+ + +
Sbjct: 95 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFF-PYYVYNIIGGL-DEEGKGAVYSF 152
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGI---------GESFWQPGLSPEQLFEVCSQVVIQAC 174
D G R + F AGGSA M+ + ++ LS ++ + V I A
Sbjct: 153 DPVGSYQRDS-FKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAA 211
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G V +V + + + R D
Sbjct: 212 ERDVYTGDALKVCIVTKEGIREETVPLRKD 241
>gi|426235057|ref|XP_004011507.1| PREDICTED: proteasome subunit beta type-1 [Ovis aries]
Length = 241
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 93/210 (44%), Gaps = 14/210 (6%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN-KVHQMSPHLYLINPGLCADGMQFAE 63
+GG ++A+AG++ + D L +G F+I ++ K ++++ + G D + +
Sbjct: 36 NGGTVLAIAGEDFSIVASDTRLSEG-FSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 94
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y S ++ AA+ S LY+R+ P ++ II G + G+ + +
Sbjct: 95 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFF-PYYVYNIIGGL-DEEGKGAVYSF 152
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGI---------GESFWQPGLSPEQLFEVCSQVVIQAC 174
D G R + F AGGSA M+ + ++ LS ++ + V I A
Sbjct: 153 DPVGSYQRDS-FKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAA 211
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G V +V + + + R D
Sbjct: 212 ERDVYTGDALRVCIVTKEGIREETVPLRKD 241
>gi|431904620|gb|ELK10002.1| Proteasome subunit beta type-1 [Pteropus alecto]
Length = 241
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 93/210 (44%), Gaps = 14/210 (6%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN-KVHQMSPHLYLINPGLCADGMQFAE 63
+GG ++A+AG++ + D L +G F+I ++ K ++++ + G D + +
Sbjct: 36 NGGTVLAIAGEDFSIVASDTRLSEG-FSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 94
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y S ++ AA+ S LY+R+ P ++ II G + G+ + +
Sbjct: 95 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFF-PYYVYNIIGGL-DEEGKGAVYSF 152
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGI---------GESFWQPGLSPEQLFEVCSQVVIQAC 174
D G R + F AGGSA M+ + ++ LS ++ + V I A
Sbjct: 153 DPVGSYQRDS-FKAGGSASAMLQPLLDNQVGFKNMQNVEHIPLSLDRAMRLVKDVFISAA 211
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G V +V + + I R D
Sbjct: 212 ERDVYTGDALKVCIVTKEGIREETIPLRKD 241
>gi|346986249|ref|NP_001231282.1| proteasome subunit beta type-1 [Sus scrofa]
Length = 241
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 93/210 (44%), Gaps = 14/210 (6%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN-KVHQMSPHLYLINPGLCADGMQFAE 63
+GG ++A+AG++ + D L +G F+I ++ K ++++ + G D + +
Sbjct: 36 NGGTVLAIAGEDFSIVASDTRLSEG-FSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 94
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y S ++ AA+ S LY+R+ P ++ II G + G+ + +
Sbjct: 95 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFF-PYYVYNIIGGL-DEEGKGAVYSF 152
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGI---------GESFWQPGLSPEQLFEVCSQVVIQAC 174
D G R + F AGGSA M+ + ++ LS ++ + V I A
Sbjct: 153 DPVGSYQRDS-FKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAA 211
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G + +V + V + R D
Sbjct: 212 ERDVYTGDALRICIVTKEGVREETVPLRKD 241
>gi|301108459|ref|XP_002903311.1| proteasome subunit beta, putative [Phytophthora infestans T30-4]
gi|262097683|gb|EEY55735.1| proteasome subunit beta, putative [Phytophthora infestans T30-4]
Length = 247
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/207 (20%), Positives = 89/207 (42%), Gaps = 9/207 (4%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG ++A+AG++ + D L G ++ E+K+H+++P L PG D +Q
Sbjct: 43 NGGTVLAIAGEDFVVVAGDTRLSTGYSILSRDESKLHELTPTTVLGCPGSHNDIIQLRGV 102
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+++R Y ++ ++ + + LY+R+ P + I+ G ++G+ + T D
Sbjct: 103 LSIRAQMYQHDNETSMTSSAMSQLLMNTLYSRRFF-PYYAFCILCGI-DENGKGVVYTYD 160
Query: 125 MAGCETRKTDFVAGGSAQ-------NMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERD 177
G R T G N++ + + L+ ++ ++ I A ERD
Sbjct: 161 AIGSYDRVTRAAQGSGGHLMIPLLDNLVEHDTRTDPKKALTLQETKDIIKDAFITAGERD 220
Query: 178 TKSGWGATVYVVEPDKVTIRKIATRMD 204
+G + ++ + A + D
Sbjct: 221 IYTGDSVEILTIKASGIDREMFALKKD 247
>gi|240281182|gb|EER44685.1| proteasome component [Ajellomyces capsulatus H143]
Length = 227
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 82/194 (42%), Gaps = 10/194 (5%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G ++ + GK+ I ++G + ++K ++S H + G D +QFAE +
Sbjct: 25 GEVLLGITGKDFTLIAASKAAMRGATILKASDDKTRELSKHTIMAFSGEAGDTVQFAEYI 84
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTS--PLFINPIIAGFYPDSGEVFLSTL 123
Y ++ +SP A+ EL AR L S P +N ++ G P + + L L
Sbjct: 85 QANVQLYSMRNEAELSPSAVASFVRGEL-ARSLRSRRPYTVNLLLGGVDPITEKPSLYWL 143
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQ---LFEVCSQVVIQACERDTKS 180
D + A G AQ + I + P ++ EQ L E+C+ + + D K
Sbjct: 144 DYLAA-LAPVPYAAHGYAQYYCLSILDKHHHPDITLEQGLKLLEMCTDELKRRLPIDFK- 201
Query: 181 GWGATVYVVEPDKV 194
G V VV D +
Sbjct: 202 --GVLVKVVRKDGI 213
>gi|145486963|ref|XP_001429487.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124396580|emb|CAK62089.1| unnamed protein product [Paramecium tetraurelia]
Length = 236
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 83/173 (47%), Gaps = 14/173 (8%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN--KVHQMSPHLYLINPGLCADGMQFAE 63
GG+++A+A K +G D L G ++A+++N K+ Q+S + ++ G +D Q
Sbjct: 21 GGSVIALAYKGGVVVGADTLCSYG--SMADFKNVEKIAQVSKNTIYVSSGEFSDFQQVVR 78
Query: 64 KMTL--RTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLS 121
++ R+A P D +A R +PL++ +IAGF+ +GE +L
Sbjct: 79 ELAKIDRSALQYDDGVHPSPRDYGNYLARLSYKRRCKINPLYLQNVIAGFH--NGERYLG 136
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQAC 174
+D+ G +++FV G A I ++W + +Q ++ VI+ C
Sbjct: 137 LVDIYGTYL-ESNFVTTGFASYFCKAIISNYWNENCTLDQ-----AKQVIREC 183
>gi|440894478|gb|ELR46920.1| Proteasome subunit beta type-1, partial [Bos grunniens mutus]
Length = 241
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 93/210 (44%), Gaps = 14/210 (6%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN-KVHQMSPHLYLINPGLCADGMQFAE 63
+GG ++A+AG++ + D L +G F+I ++ K ++++ + G D + +
Sbjct: 36 NGGTVLAIAGEDFSIVASDTRLSEG-FSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 94
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y S ++ AA+ S LY+R+ P ++ II G + G+ + +
Sbjct: 95 IIEARLKMYKHSNNKAMTTGAVAAMLSTILYSRRFF-PYYVYNIIGGL-DEEGKGAVYSF 152
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGI---------GESFWQPGLSPEQLFEVCSQVVIQAC 174
D G R + F AGGSA M+ + ++ LS ++ + V I A
Sbjct: 153 DPVGSYQRDS-FKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAA 211
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G V +V + + + R D
Sbjct: 212 ERDVYTGDALKVCIVTKEGIREETVPLRKD 241
>gi|84370111|ref|NP_001033628.1| proteasome subunit beta type-1 precursor [Bos taurus]
gi|108860905|sp|Q2TBX6.1|PSB1_BOVIN RecName: Full=Proteasome subunit beta type-1; Flags: Precursor
gi|83638719|gb|AAI09495.1| Proteasome (prosome, macropain) subunit, beta type, 1 [Bos taurus]
Length = 241
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 93/210 (44%), Gaps = 14/210 (6%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN-KVHQMSPHLYLINPGLCADGMQFAE 63
+GG ++A+AG++ + D L +G F+I ++ K ++++ + G D + +
Sbjct: 36 NGGTVLAIAGEDFSIVASDTRLSEG-FSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 94
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y S ++ AA+ S LY+R+ P ++ II G + G+ + +
Sbjct: 95 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFF-PYYVYNIIGGL-DEEGKGAVYSF 152
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGI---------GESFWQPGLSPEQLFEVCSQVVIQAC 174
D G R + F AGGSA M+ + ++ LS ++ + V I A
Sbjct: 153 DPVGSYQRDS-FKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAA 211
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G V +V + + + R D
Sbjct: 212 ERDVYTGDALKVCIVTKEGIRGETVPLRKD 241
>gi|225705308|gb|ACO08500.1| Proteasome subunit beta type 1-A [Oncorhynchus mykiss]
Length = 236
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 88/209 (42%), Gaps = 12/209 (5%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG ++A+AG++ + D L +G + K ++++ + G D + +
Sbjct: 31 NGGTVLAVAGEDFAIVASDTRLSEGYSIHSRDSPKCYKLTNTTVIGCSGFHGDCLTLTKI 90
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y S ++ AA S LY R+ P ++ II G + G+ + + D
Sbjct: 91 IDARLKMYKHSNNKSMTSGAIAATLSTILYGRRFF-PYYVYNIIGGL-DEEGKGAVYSFD 148
Query: 125 MAGCETRKTDFVAGGSAQNMIM-----GIG----ESFWQPGLSPEQLFEVCSQVVIQACE 175
G R T + AGGSA M+ IG E L+ E+ ++ V I A E
Sbjct: 149 PVGSYQRGT-YKAGGSASAMLQPLLDNQIGFKNMEGVQHLPLNQEKAVQLVKDVFISAAE 207
Query: 176 RDTKSGWGATVYVVEPDKVTIRKIATRMD 204
RD +G + +V + + + R D
Sbjct: 208 RDVYTGDALRICIVTKEGIKEETVPLRKD 236
>gi|395839143|ref|XP_003792460.1| PREDICTED: LOW QUALITY PROTEIN: proteasome subunit beta type-1
[Otolemur garnettii]
Length = 343
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 94/212 (44%), Gaps = 18/212 (8%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN-KVHQMSPHLYLINPGLCADGMQFAE 63
+GG ++A+AG++ + D L +G F+I ++ K ++++ + G D + +
Sbjct: 138 NGGTVLAIAGEDFSIVASDTRLSEG-FSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 196
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y S ++ AA+ S LY+R+ P ++ II G + G+ + +
Sbjct: 197 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFF-PYYVYNIIGGL-DEEGKGAVYSF 254
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPG-----------LSPEQLFEVCSQVVIQ 172
D G R + F AGGSA M+ + ++ Q G LS ++ + V I
Sbjct: 255 DPVGSYQRDS-FKAGGSASAMLQPLLDN--QVGFKNMQNVEHVPLSLDRAMRLVKDVFIS 311
Query: 173 ACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A ERD +G + +V D I R D
Sbjct: 312 AAERDVYTGDALKICIVTRDGTREETIPLRKD 343
>gi|195433599|ref|XP_002064798.1| GK15122 [Drosophila willistoni]
gi|194160883|gb|EDW75784.1| GK15122 [Drosophila willistoni]
Length = 207
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 79/190 (41%), Gaps = 9/190 (4%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
++ + G + + D + + E ENK+H++S +L + G D QF E ++
Sbjct: 4 LLGIKGPDFIMLAADSTHARSIIVMKEDENKIHKVSDNLLISTTGESGDTDQFTEFISKN 63
Query: 69 TANYVASEQSPISPDTFAAIASWEL--YARKLTSPLFINPIIAGFYPDSGE--VFLSTLD 124
+ Y +SP A L Y R T P + + G+ P G F+ L
Sbjct: 64 ISLYKMRNGYDLSPRAAAHFTRKNLAEYLRSRT-PYQVFMFVGGYDPQEGPELTFIDYLA 122
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
A + ++ G I + +W P ++ E+ ++V + V++ +R +
Sbjct: 123 TA----KSVNYAGHGYGSIFCSSIYDRYWHPNITQEEAYDVFKKCVLEIQKRLVVNLKNF 178
Query: 185 TVYVVEPDKV 194
TV VV+ D V
Sbjct: 179 TVAVVDKDGV 188
>gi|424814263|ref|ZP_18239441.1| 20S proteasome, beta subunit [Candidatus Nanosalina sp. J07AB43]
gi|339757879|gb|EGQ43136.1| 20S proteasome, beta subunit [Candidatus Nanosalina sp. J07AB43]
Length = 216
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 83/193 (43%), Gaps = 14/193 (7%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
D GAI+A A K A+G G ++ K++++ + L G D + +
Sbjct: 26 DKGAILA-ADKRA-ALG-------GRLVSNKHAQKIYELDDEIGLTIAGSVGDAQKVV-R 75
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
M N E +S + + L+A K+ F+N + G + GE L +LD
Sbjct: 76 MMRSQLNMKKLETRELSVKGAGTLLANILHANKMMP--FMNQFVLGGIQE-GEGILYSLD 132
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
AG D+ A GS M G+ E ++ G+S E+ E+ V A ERDT SG G
Sbjct: 133 PAGGLMPHEDYTATGSGSQMAFGVLEDGFEHGISHEEGKELAMNAVKSAMERDTASGNGI 192
Query: 185 TV-YVVEPDKVTI 196
V + E D +
Sbjct: 193 MVAEITEEDGYNV 205
>gi|225707182|gb|ACO09437.1| Proteasome subunit beta type 1-A [Osmerus mordax]
Length = 237
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 88/209 (42%), Gaps = 12/209 (5%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG ++A+AG++ + D L +G + K ++++ + G D +
Sbjct: 32 NGGTVLAVAGEDFALVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDCPTLTKI 91
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y S ++ AA+ S LY R+ P ++ II G + G + + D
Sbjct: 92 IDARLKMYKHSNNKTMTSGAIAAMLSTILYGRRFF-PYYVYNIIGGL-DEQGRGAVYSFD 149
Query: 125 MAGCETRKTDFVAGGSAQNMIM-----GIG----ESFWQPGLSPEQLFEVCSQVVIQACE 175
G R T + AGGSA M+ IG E+ LS E+ ++ V I A E
Sbjct: 150 PVGSYQRDT-YKAGGSASAMLQPLLDNQIGFKNMENVQHLPLSQEKAVQLVKDVFISAAE 208
Query: 176 RDTKSGWGATVYVVEPDKVTIRKIATRMD 204
RD +G + ++ + + + R D
Sbjct: 209 RDVYTGDALRICIITKEGIKEETVPLRKD 237
>gi|151301141|ref|NP_001093092.1| proteasome beta subunit [Bombyx mori]
gi|95102764|gb|ABF51323.1| proteasome beta subunit [Bombyx mori]
Length = 232
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 84/210 (40%), Gaps = 12/210 (5%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG+IVA+AG + IG D L G + K+ ++S L G D +
Sbjct: 26 DNGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTR 85
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y ++ A + S LY ++ P +++ ++AG D S
Sbjct: 86 LLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFF-PYYVSNVLAGLDSDGKGCVYSYD 144
Query: 124 DMAGCETRKTDFVAGGSAQNMIM-----GIG----ESFWQPGLSPEQLFEVCSQVVIQAC 174
+ C + +F AGGSA + IG ++ + L E+ + V I A
Sbjct: 145 PIGHCA--RHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPREKALALLKDVFISAA 202
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G + ++ + K R D
Sbjct: 203 ERDIYTGDSIYILIITASGIQEEKFELRKD 232
>gi|297678538|ref|XP_002817127.1| PREDICTED: proteasome subunit beta type-1-like [Pongo abelii]
gi|297679681|ref|XP_002817653.1| PREDICTED: proteasome subunit beta type-1 isoform 1 [Pongo abelii]
Length = 241
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 93/210 (44%), Gaps = 14/210 (6%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN-KVHQMSPHLYLINPGLCADGMQFAE 63
+GG ++A+AG++ + D L +G F+I ++ K ++++ + G D + +
Sbjct: 36 NGGTVLAIAGEDFAIVASDTRLSEG-FSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 94
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y S ++ AA+ S LY+R+ P ++ II G + G+ + +
Sbjct: 95 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFF-PYYVYNIIGGL-DEEGKGAVYSF 152
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGI---------GESFWQPGLSPEQLFEVCSQVVIQAC 174
D G R + F AGGSA M+ + ++ LS ++ + V I A
Sbjct: 153 DPVGSYQRDS-FKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAA 211
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G + +V + + + R D
Sbjct: 212 ERDVYTGDALRICIVTKEGIREETVPLRKD 241
>gi|384944338|gb|AFI35774.1| proteasome subunit beta type-1 precursor [Macaca mulatta]
Length = 241
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 93/210 (44%), Gaps = 14/210 (6%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN-KVHQMSPHLYLINPGLCADGMQFAE 63
+GG ++A+AG++ + D L +G F+I ++ K ++++ + G D + +
Sbjct: 36 NGGTVLAIAGEDFAIVASDTRLSEG-FSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 94
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y S ++ AA+ S LY+R+ P ++ II G + G+ + +
Sbjct: 95 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFF-PYYVYNIIGGL-DEEGKGAVYSF 152
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGI---------GESFWQPGLSPEQLFEVCSQVVIQAC 174
D G R + F AGGSA M+ + ++ LS ++ + V I A
Sbjct: 153 DPVGSYQRDS-FKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAA 211
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G + +V + + + R D
Sbjct: 212 ERDVYTGDALRICIVTKEGIREETVPLRKD 241
>gi|197129775|gb|ACH46273.1| putative proteasome subunit beta type 1 [Taeniopygia guttata]
Length = 238
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 91/209 (43%), Gaps = 12/209 (5%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG ++A+AG++ + D L +G + K ++++ + G D + +
Sbjct: 33 NGGTVLAIAGEDFCIVASDTRLSEGYSIHSRDSPKCYKLTERTVIGCTGFHGDCLTLTKI 92
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ Y S ++ AA+ S LY+R+ P ++ II G + G+ + + D
Sbjct: 93 IEAGGEMYKHSNFKTMTTGAIAAMLSTILYSRRFF-PYYVYNIIGGL-DEEGKGAVYSFD 150
Query: 125 MAGCETRKTDFVAGGSAQNMIM-----GIG----ESFWQPGLSPEQLFEVCSQVVIQACE 175
G R +F AGGSA M+ IG ++ L+ E+ ++ V I A E
Sbjct: 151 PVGSYERD-NFKAGGSASAMLQPLLDNQIGFKNMQNVEHVPLTLEKALQLVKDVFISAAE 209
Query: 176 RDTKSGWGATVYVVEPDKVTIRKIATRMD 204
RD +G + +V D + + I R D
Sbjct: 210 RDVYTGDALKICIVTKDGIKEQSIQLRKD 238
>gi|386781057|ref|NP_001247565.1| proteasome subunit beta type-1 [Macaca mulatta]
gi|355562210|gb|EHH18842.1| hypothetical protein EGK_15528 [Macaca mulatta]
gi|355749047|gb|EHH53530.1| hypothetical protein EGM_14190 [Macaca fascicularis]
gi|380788877|gb|AFE66314.1| proteasome subunit beta type-1 [Macaca mulatta]
Length = 241
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 93/210 (44%), Gaps = 14/210 (6%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN-KVHQMSPHLYLINPGLCADGMQFAE 63
+GG ++A+AG++ + D L +G F+I ++ K ++++ + G D + +
Sbjct: 36 NGGTVLAIAGEDFAIVASDTRLSEG-FSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 94
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y S ++ AA+ S LY+R+ P ++ II G + G+ + +
Sbjct: 95 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFF-PYYVYNIIGGL-DEEGKGAVYSF 152
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGI---------GESFWQPGLSPEQLFEVCSQVVIQAC 174
D G R + F AGGSA M+ + ++ LS ++ + V I A
Sbjct: 153 DPVGSYQRDS-FKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAA 211
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G + +V + + + R D
Sbjct: 212 ERDVYTGDALRICIVTKEGIREETVPLRKD 241
>gi|432114954|gb|ELK36597.1| Proteasome subunit beta type-1 [Myotis davidii]
Length = 240
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 93/210 (44%), Gaps = 14/210 (6%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN-KVHQMSPHLYLINPGLCADGMQFAE 63
+GG ++A+AG++ + D L +G F+I ++ K ++++ + G D + +
Sbjct: 35 NGGTVLAIAGEDFSIVASDTRLSEG-FSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 93
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y S ++ AA+ S LY+R+ P ++ II G + G+ + +
Sbjct: 94 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFF-PYYVYNIIGGL-DEEGKGAVYSF 151
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGI---------GESFWQPGLSPEQLFEVCSQVVIQAC 174
D G R + F AGGSA M+ + ++ LS ++ + V I A
Sbjct: 152 DPVGSYQRDS-FKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAA 210
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G + +V + + + R D
Sbjct: 211 ERDVYTGDALRICIVTKEGIREETVPLRKD 240
>gi|403305890|ref|XP_003943482.1| PREDICTED: proteasome subunit beta type-1 [Saimiri boliviensis
boliviensis]
Length = 241
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 93/210 (44%), Gaps = 14/210 (6%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN-KVHQMSPHLYLINPGLCADGMQFAE 63
+GG ++A+AG++ + D L +G F+I ++ K ++++ + G D + +
Sbjct: 36 NGGTVLAIAGEDFSIVASDTRLSEG-FSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 94
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y S ++ AA+ S LY+R+ P ++ II G + G+ + +
Sbjct: 95 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFF-PYYVYNIIGGL-DEEGKGAVYSF 152
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGI---------GESFWQPGLSPEQLFEVCSQVVIQAC 174
D G R + F AGGSA M+ + ++ LS ++ + V I A
Sbjct: 153 DPVGSYQRDS-FKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAA 211
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G + +V + + + R D
Sbjct: 212 ERDVYTGDALRICIVTKEGIREETVPLRKD 241
>gi|448351963|ref|ZP_21540757.1| proteasome endopeptidase complex subunit beta [Natrialba
taiwanensis DSM 12281]
gi|445632523|gb|ELY85735.1| proteasome endopeptidase complex subunit beta [Natrialba
taiwanensis DSM 12281]
Length = 243
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 67/156 (42%), Gaps = 8/156 (5%)
Query: 29 GDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAI 88
G F + KV Q+ P L G F + Y A P+S D A +
Sbjct: 72 GRFVSNKNVQKVEQIHPTGALTMVGSVGGAQSFISSLRAEVNLYEARRGDPMSIDALATL 131
Query: 89 ASWELYARKLTSPLF-INPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMG 147
A +AR P F I+PI+ G + V+ ++D AG + D+ GS + G
Sbjct: 132 AGN--FARG--GPFFAIHPILGGVDSEGSHVY--SIDPAGG-VMEDDYTVTGSGMQLAYG 184
Query: 148 IGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWG 183
+ E ++ GL+ + + ++ + A ERDT SG G
Sbjct: 185 LLEQEYEDGLANDDATTIAARAIKSAAERDTGSGNG 220
>gi|195029659|ref|XP_001987689.1| GH19825 [Drosophila grimshawi]
gi|193903689|gb|EDW02556.1| GH19825 [Drosophila grimshawi]
Length = 222
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 81/195 (41%), Gaps = 4/195 (2%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ IG D G + +K+ Q+S +Y G AD A
Sbjct: 12 VSTGTTIMAVEFDGGVVIGADSRTSSGAYVANRVTDKLTQISDKIYCCRSGSAADTQAIA 71
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLST 122
+ + + NY Q+ P + A + + + L I+AG+ + G S
Sbjct: 72 D-IVAYSLNY-HRNQTSKEPLVWEAASEFRNFCYNYRDSLLAGIIVAGWDEERGGQVYS- 128
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGW 182
+ + G TR++ + GGS + I G ++PG+ E+ E + V A D SG
Sbjct: 129 VPLGGMLTRESCTI-GGSGSSFIYGFVREHYRPGMPKEECIEFVKKAVQHAIFHDGSSGG 187
Query: 183 GATVYVVEPDKVTIR 197
+ +++ D + R
Sbjct: 188 VVRIGIIDKDGIERR 202
>gi|73974057|ref|XP_532275.2| PREDICTED: proteasome subunit beta type-1 [Canis lupus familiaris]
Length = 241
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 95/212 (44%), Gaps = 18/212 (8%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN-KVHQMSPHLYLINPGLCADGMQFAE 63
+GG ++A+AG++ + D L +G F+I ++ K ++++ + G D + +
Sbjct: 36 NGGTVLAIAGEDFSIVASDTRLSEG-FSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 94
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y S ++ AA+ S LY+R+ P ++ II G + G+ + +
Sbjct: 95 IIEARLKMYKHSNNKTMTTGAIAAMLSTILYSRRFF-PYYVYNIIGGL-DEEGKGAVYSF 152
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPG-----------LSPEQLFEVCSQVVIQ 172
D G R + F AGGSA M+ + ++ Q G LS ++ + V I
Sbjct: 153 DPVGSYQRDS-FKAGGSASAMLQPLLDN--QVGFKNMQNVEHVPLSLDRAMRLVKDVFIS 209
Query: 173 ACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A ERD +G + +V + + + R D
Sbjct: 210 AAERDVYTGDALRICIVTKEGIREETVPLRKD 241
>gi|354486298|ref|XP_003505318.1| PREDICTED: proteasome subunit beta type-1-like [Cricetulus griseus]
Length = 240
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 93/210 (44%), Gaps = 14/210 (6%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN-KVHQMSPHLYLINPGLCADGMQFAE 63
+GG ++A+AG++ + D L +G F+I ++ K ++++ + G D + +
Sbjct: 35 NGGTVLAIAGEDFSIVASDTRLSEG-FSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 93
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y S ++ AA+ S LY+R+ P ++ II G + G+ + +
Sbjct: 94 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFF-PYYVYNIIGGL-DEEGKGAVYSF 151
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGI---------GESFWQPGLSPEQLFEVCSQVVIQAC 174
D G R + F AGGSA M+ + ++ LS ++ + V I A
Sbjct: 152 DPVGSYQRDS-FKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAA 210
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G + +V + + + R D
Sbjct: 211 ERDVYTGDALRICIVTKEGIREETVPLRKD 240
>gi|410051479|ref|XP_511441.4| PREDICTED: proteasome subunit beta type-3 [Pan troglodytes]
Length = 168
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GKNC AI D +Q +++ K+ M LY+ GL D
Sbjct: 4 MSYN-GGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARK 97
A+++ R Y E I P T ++ + LY ++
Sbjct: 62 TVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKR 99
>gi|351714661|gb|EHB17580.1| Proteasome subunit beta type-1 [Heterocephalus glaber]
Length = 240
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 92/210 (43%), Gaps = 14/210 (6%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN-KVHQMSPHLYLINPGLCADGMQFAE 63
+GG ++A+AG++ + D L +G F+I + K ++++ + G D + +
Sbjct: 35 NGGTVLAIAGEDFSIVASDTRLSEG-FSIHTRNSPKCYKLTDKTVIGCSGFHGDCLTLTK 93
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y S ++ AA+ S LY+R+ P ++ II G + G+ + +
Sbjct: 94 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFF-PYYVYNIIGGL-DEEGKGAVYSF 151
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGI---------GESFWQPGLSPEQLFEVCSQVVIQAC 174
D G R + F AGGSA M+ + ++ LS ++ + V I A
Sbjct: 152 DPVGSYQRDS-FKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAA 210
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G + +V + + I R D
Sbjct: 211 ERDVYTGDALRICIVTKEGIREETIPLRKD 240
>gi|367017710|ref|XP_003683353.1| hypothetical protein TDEL_0H02830 [Torulaspora delbrueckii]
gi|359751017|emb|CCE94142.1| hypothetical protein TDEL_0H02830 [Torulaspora delbrueckii]
Length = 196
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 81/188 (43%), Gaps = 4/188 (2%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
I+ + ++ + + +G + + ++K +SPH + G D +QFAE +
Sbjct: 4 ILGIRVQDSVILATSKAVTRGISILKDSDDKTRLLSPHNLMSFSGEAGDTVQFAEYIQAN 63
Query: 69 TANYVASEQSPISPDTFAAIASWELYARKLTS--PLFINPIIAGFYPDSGEVFLSTLDMA 126
Y E +SP A+ EL A+ L S P +N +I G+ +G+ L +D
Sbjct: 64 MQLYSVRENVELSPHATASFVRQEL-AKSLRSRKPYQVNVLIGGYDSKAGKPELYQIDYL 122
Query: 127 GCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATV 186
G + + A G A + + ++P ++ ++ E+ + V + R G V
Sbjct: 123 GTNV-ELPYAAHGYAGFYTFSLLDRHYRPDMTEQEGLELLKKCVEELNRRMPIDFKGVIV 181
Query: 187 YVVEPDKV 194
VV+ D V
Sbjct: 182 KVVDKDGV 189
>gi|237838257|ref|XP_002368426.1| proteasome subunit beta type 1, putative [Toxoplasma gondii ME49]
gi|211966090|gb|EEB01286.1| proteasome subunit beta type 1, putative [Toxoplasma gondii ME49]
Length = 359
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 91/196 (46%), Gaps = 13/196 (6%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTI-AEYENKVHQMSPHLYLINPGLCADGMQF 61
+N+GG +V +AG++ FA+ V + F+I + ++K+ +++ + L G+ AD
Sbjct: 153 VNNGGTVVCVAGED-FAVAVGDTRLSTGFSIYSRRQSKITKLTDKVVLATSGMEADKTTL 211
Query: 62 AEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLS 121
+ +R Y + P S + A + S LY+R+ P + ++ G ++G+ +
Sbjct: 212 HNLLKIRIEQYTHQHRHPPSLNAIAQLLSTVLYSRRFF-PFYTFNVLCGI-DENGKGAVY 269
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGI--------GESFWQPGLSPEQLFEVCSQVVIQA 173
D G + + G+ ++IM + + + L+ E++ E+ V A
Sbjct: 270 GYDAIGS-FEPSRYNCAGTGAHLIMPVLDNQISRNNQQGEKAPLTRERIVEIVKSAVASA 328
Query: 174 CERDTKSGWGATVYVV 189
ERD +G A V ++
Sbjct: 329 GERDIFTGDQAEVVMI 344
>gi|154279090|ref|XP_001540358.1| proteasome component Pre1 [Ajellomyces capsulatus NAm1]
gi|150412301|gb|EDN07688.1| proteasome component Pre1 [Ajellomyces capsulatus NAm1]
Length = 203
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 81/191 (42%), Gaps = 10/191 (5%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
++ + GK+ I ++G + ++K ++S H + G D +QFAE +
Sbjct: 4 LLGITGKDFTLIAASKAAMRGATILKASDDKTRELSKHTIMAFSGEAGDTVQFAEYIQAN 63
Query: 69 TANYVASEQSPISPDTFAAIASWELYARKLTS--PLFINPIIAGFYPDSGEVFLSTLDMA 126
Y ++ +SP A+ EL AR L S P +N ++ G P + + L LD
Sbjct: 64 VQLYSMRNEAELSPSAVASFVRGEL-ARSLRSRRPYTVNLLLGGVDPITEKPSLYWLDYL 122
Query: 127 GCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQ---LFEVCSQVVIQACERDTKSGWG 183
+ A G AQ + I + P ++ EQ L E+C+ + + D K G
Sbjct: 123 AA-LAPVPYAAHGYAQYYCLSILDKHHHPDITLEQGLMLLEMCTDELKRRLPIDFK---G 178
Query: 184 ATVYVVEPDKV 194
V VV D +
Sbjct: 179 VLVKVVRKDGI 189
>gi|221505718|gb|EEE31363.1| proteasome subunit beta type, putative [Toxoplasma gondii VEG]
Length = 361
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 91/196 (46%), Gaps = 13/196 (6%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTI-AEYENKVHQMSPHLYLINPGLCADGMQF 61
+N+GG +V +AG++ FA+ V + F+I + ++K+ +++ + L G+ AD
Sbjct: 155 VNNGGTVVCVAGED-FAVAVGDTRLSTGFSIYSRRQSKITKLTDKVVLATSGMEADKTTL 213
Query: 62 AEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLS 121
+ +R Y + P S + A + S LY+R+ P + ++ G ++G+ +
Sbjct: 214 HNLLKIRIEQYTHQHRHPPSLNAIAQLLSTVLYSRRFF-PFYTFNVLCGI-DENGKGAVY 271
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGI--------GESFWQPGLSPEQLFEVCSQVVIQA 173
D G + + G+ ++IM + + + L+ E++ E+ V A
Sbjct: 272 GYDAIGS-FEPSRYNCAGTGAHLIMPVLDNQISRNNQQGEKAPLTRERIVEIVKSAVASA 330
Query: 174 CERDTKSGWGATVYVV 189
ERD +G A V ++
Sbjct: 331 GERDIFTGDQAEVVMI 346
>gi|71005512|ref|XP_757422.1| hypothetical protein UM01275.1 [Ustilago maydis 521]
gi|46096905|gb|EAK82138.1| hypothetical protein UM01275.1 [Ustilago maydis 521]
Length = 222
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 69/180 (38%), Gaps = 6/180 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
+N G +I+A+A +G D G + +K+ +S +Y G AD A
Sbjct: 17 VNLGTSIMAVAYDKGVILGADSRTTMGSYIANRVTDKLTHLSDRIYCCRSGSAADTQAIA 76
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGF-YPDSGEVFLS 121
+ +T Y SP P T A ++ + L I+AG+ D G VF
Sbjct: 77 DIVTYYLDMYAVESDSP--PQTKVAANLFQEIVYQNKDRLSAGIIVAGWDKKDGGRVFNV 134
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
L G + + GGS I G ++ W+ G Q E + A RD SG
Sbjct: 135 PL---GGGVFEQPWAIGGSGSTYIYGYCDATWKAGWGKHQTIEFVKNALALAMRRDGSSG 191
>gi|168046657|ref|XP_001775789.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672796|gb|EDQ59328.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 229
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/214 (21%), Positives = 86/214 (40%), Gaps = 16/214 (7%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
N+GG VA+AG + I D + G + +K+HQ++ L + G AD +
Sbjct: 19 NNGGTCVAIAGADYCVIAADTRMSTGFSILTRDYSKIHQITEKCVLASSGFQADVRSLQK 78
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y +S A + S LY ++ P + ++ G + G+ + T
Sbjct: 79 NLDARHQIYQHQHNKQMSCPAMAQLLSNTLYYKRFF-PYYAFNVLGGL-DNEGKGCVYTY 136
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPG-------------LSPEQLFEVCSQVV 170
D G R + + + GS Q +IM + ++ + L+ + ++
Sbjct: 137 DAVGSYER-SGYSSQGSGQTLIMPVLDNQLKSASPLVLPPRESSTPLTENEAVDLIKDTF 195
Query: 171 IQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A ERD +G G + ++ D + + + D
Sbjct: 196 ASAAERDIYTGDGVEIVIINKDGIRRETMPLKRD 229
>gi|221484304|gb|EEE22600.1| proteasome subunit beta type, putative [Toxoplasma gondii GT1]
Length = 359
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 91/196 (46%), Gaps = 13/196 (6%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTI-AEYENKVHQMSPHLYLINPGLCADGMQF 61
+N+GG +V +AG++ FA+ V + F+I + ++K+ +++ + L G+ AD
Sbjct: 153 VNNGGTVVCVAGED-FAVAVGDTRLSTGFSIYSRRQSKITKLTDKVVLATSGMEADKTTL 211
Query: 62 AEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLS 121
+ +R Y + P S + A + S LY+R+ P + ++ G ++G+ +
Sbjct: 212 HNLLKIRIEQYTHQHRHPPSLNAIAQLLSTVLYSRRFF-PFYTFNVLCGI-DENGKGAVY 269
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGI--------GESFWQPGLSPEQLFEVCSQVVIQA 173
D G + + G+ ++IM + + + L+ E++ E+ V A
Sbjct: 270 GYDAIGS-FEPSRYNCAGTGAHLIMPVLDNQISRNNQQGEKAPLTRERIVEIVKSAVASA 328
Query: 174 CERDTKSGWGATVYVV 189
ERD +G A V ++
Sbjct: 329 GERDIFTGDQAEVVMI 344
>gi|391338616|ref|XP_003743654.1| PREDICTED: proteasome subunit beta type-1-like [Metaseiulus
occidentalis]
Length = 233
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 90/210 (42%), Gaps = 12/210 (5%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++ G +V +AG++ IG D L G + ++K+ +++ L + G AD + +
Sbjct: 27 DNAGTLVGIAGEDFAVIGSDLRLSLGFSIFSRDQSKLFKLTDRAVLGSSGCWADCVSLNK 86
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ +R Y P+S A S LY+R+ P F I+AG D G+ + +
Sbjct: 87 FLEIRLKTYGFEHNQPMSTKAIAQCCSTMLYSRRFF-PYFAWNILAGIDED-GKGAIYSY 144
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESF------WQPGLSP---EQLFEVCSQVVIQAC 174
D G + + A G++ ++ +S P +P E+ + + I A
Sbjct: 145 DPVG-NFERVPYQAAGNSGPQVLPFLDSIVGKKNQSNPDKAPITKERAINLIKDIFISAA 203
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD G G + V+ D + ++ R D
Sbjct: 204 ERDITVGDGTHIIVITKDGLEEIRLDLRKD 233
>gi|444319602|ref|XP_004180458.1| hypothetical protein TBLA_0D04430 [Tetrapisispora blattae CBS 6284]
gi|387513500|emb|CCH60939.1| hypothetical protein TBLA_0D04430 [Tetrapisispora blattae CBS 6284]
Length = 195
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/189 (20%), Positives = 85/189 (44%), Gaps = 4/189 (2%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
I+ + ++C + + +G + + ++K Q+SPH + G D + FAE +
Sbjct: 4 ILGIRVQDCVIMATSKAVTRGISVLKDTDDKTRQLSPHSLMAFSGEAGDTVNFAEYIQAN 63
Query: 69 TANYVASEQSPISPDTFAAIASWELYARKLTS--PLFINPIIAGFYPDSGEVFLSTLDMA 126
Y E + +SP ++ EL A+ + S P +N +I G+ S + L +D
Sbjct: 64 VQLYTIRENNELSPQAVSSFVRKEL-AKSIRSRKPYQVNVLIGGYDSTSKKPQLYQIDYL 122
Query: 127 GCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATV 186
G + + + A G + + + ++P ++ E+ ++ + + + +R G V
Sbjct: 123 GTKV-ELPYAAHGYSGFYTFSLLDHHYRPDMTKEEGLDLLKKCIEELQKRMPIDFKGVLV 181
Query: 187 YVVEPDKVT 195
+V+ + V+
Sbjct: 182 KIVDENGVS 190
>gi|296199648|ref|XP_002747247.1| PREDICTED: proteasome subunit beta type-1-like [Callithrix jacchus]
Length = 241
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 93/210 (44%), Gaps = 14/210 (6%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN-KVHQMSPHLYLINPGLCADGMQFAE 63
+GG ++A+AG++ + D L +G F+I ++ K ++++ + G D + +
Sbjct: 36 NGGTVLAIAGEDFSIVASDTRLSEG-FSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 94
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y S ++ AA+ S LY+R+ P ++ II G + G+ + +
Sbjct: 95 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFF-PYYVYNIIGGL-DEEGKGAVYSF 152
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGI---------GESFWQPGLSPEQLFEVCSQVVIQAC 174
D G R + F AGGSA M+ + ++ LS ++ + V I A
Sbjct: 153 DPVGSYQRDS-FKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAA 211
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G + +V + + + R D
Sbjct: 212 ERDVYTGDALRICIVTKEGIREETLPLRKD 241
>gi|301779700|ref|XP_002925260.1| PREDICTED: proteasome subunit beta type-1-like [Ailuropoda
melanoleuca]
gi|281351745|gb|EFB27329.1| hypothetical protein PANDA_014727 [Ailuropoda melanoleuca]
Length = 241
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 88/209 (42%), Gaps = 12/209 (5%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG ++A+AG++ + D L +G K ++++ + G D + +
Sbjct: 36 NGGTVLAIAGEDFSIVASDTRLSEGYSVHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKI 95
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y S ++ AA+ S LY+R+ P ++ II G + G+ + + D
Sbjct: 96 IEARLKMYKHSNNKTMTTGAIAAMLSTILYSRRFF-PYYVYNIIGGL-DEEGKGAVYSFD 153
Query: 125 MAGCETRKTDFVAGGSAQNMIMGI---------GESFWQPGLSPEQLFEVCSQVVIQACE 175
G R + F AGGSA M+ + ++ LS ++ + V I A E
Sbjct: 154 PVGSYQRDS-FKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAE 212
Query: 176 RDTKSGWGATVYVVEPDKVTIRKIATRMD 204
RD +G + +V + + + R D
Sbjct: 213 RDVYTGDALRICIVTKEGIREETVPLRKD 241
>gi|161528202|ref|YP_001582028.1| proteasome endopeptidase complex protein [Nitrosopumilus maritimus
SCM1]
gi|302595718|sp|A9A4A1.1|PSB1_NITMS RecName: Full=Proteasome subunit beta 1; AltName: Full=20S
proteasome beta subunit 1; AltName: Full=Proteasome core
protein PsmB 1; Flags: Precursor
gi|160339503|gb|ABX12590.1| Proteasome endopeptidase complex [Nitrosopumilus maritimus SCM1]
Length = 198
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 82/192 (42%), Gaps = 23/192 (11%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCAD----GMQ 60
DGG + A + F G+F +++ K ++P + GL AD +Q
Sbjct: 16 DGGVVFASEKRIAF----------GNFLVSKTTKKTFPITPKVGATCAGLVADMQILSLQ 65
Query: 61 FAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFL 120
A +R + + P+T A + S +Y R+ PL I+ G + +
Sbjct: 66 IAALAKIRKMEL----KRDVPPNTVAKMMSNMMYERRY-FPLLTQVIVGGVV---DKPIM 117
Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKS 180
TLD G ++ A G+ M +G+ + ++P ++ ++ ++ + V A RD+ S
Sbjct: 118 YTLDPLGS-VLPDEYAAVGTGAEMALGVLDPQFKPNMTKDEAIDLAKRAVRAASLRDSAS 176
Query: 181 GWGATVYVVEPD 192
G G V V+ D
Sbjct: 177 GDGVDVLVITKD 188
>gi|433638518|ref|YP_007284278.1| proteasome endopeptidase complex, archaeal, beta subunit [Halovivax
ruber XH-70]
gi|433290322|gb|AGB16145.1| proteasome endopeptidase complex, archaeal, beta subunit [Halovivax
ruber XH-70]
Length = 242
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 71/170 (41%), Gaps = 8/170 (4%)
Query: 29 GDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAI 88
G F + KV Q+ P L G F + Y A +S D A +
Sbjct: 71 GRFVSNKNVQKVEQIHPTAALTLVGSVGGAQSFISNLRAEVNLYEARNSEDMSIDALATL 130
Query: 89 ASWELYARKLTSPLF-INPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMG 147
A +AR P F I+PI+ G + V+ ++D AG + D+ GS + G
Sbjct: 131 AGN--FARG--GPFFAIHPILGGVDDEGSHVY--SIDPAGG-VMEDDYTVTGSGMQLAYG 183
Query: 148 IGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIR 197
E ++ GLS ++ + ++ + A ERDT SG G + + D V I
Sbjct: 184 HLEQSYEDGLSNDEAMTIAARGIKSAVERDTGSGNGIFLCEITDDGVDIH 233
>gi|332264007|ref|XP_003281040.1| PREDICTED: proteasome subunit beta type-1 [Nomascus leucogenys]
Length = 241
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 93/210 (44%), Gaps = 14/210 (6%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN-KVHQMSPHLYLINPGLCADGMQFAE 63
+GG ++A+AG++ + D L +G F++ ++ K ++++ + G D + +
Sbjct: 36 NGGTVLAIAGEDFAIVASDTRLSEG-FSVHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 94
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y S ++ AA+ S LY+R+ P ++ II G + G+ + +
Sbjct: 95 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFF-PYYVYNIIGGL-DEEGKGAVYSF 152
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGI---------GESFWQPGLSPEQLFEVCSQVVIQAC 174
D G R + F AGGSA M+ + ++ LS ++ + V I A
Sbjct: 153 DPVGSYQRDS-FKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAA 211
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G + +V + + + R D
Sbjct: 212 ERDVYTGDALRICIVTKEGIREETVPLRKD 241
>gi|324507472|gb|ADY43167.1| Proteasome subunit beta type-1 [Ascaris suum]
Length = 253
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 6/144 (4%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYE-NKVHQMSPHLYLINPGLCADGMQFAE 63
+GG+ A+AG N I D + Q + I + K+H ++ + L G D +Q
Sbjct: 45 EGGSTAALAGDNFAIIASDTRMSQFEINILTRDAEKIHVLNNSIILACSGFYGDVLQLKR 104
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPD-SGEVFLST 122
+ R Y + ++ D A + + LY R+ P + I+AG D G VF +
Sbjct: 105 LLEARLHKYRFDYRGDMTVDLCAELLARNLYYRRFF-PYYTGSILAGIDEDGKGAVF--S 161
Query: 123 LDMAGCETRKTDFVAGGSAQNMIM 146
D GC + + A GSA+ MIM
Sbjct: 162 YDPIGC-IERLQYTASGSAEPMIM 184
>gi|353238864|emb|CCA70796.1| probable PRE7-20S proteasome subunit(beta6) [Piriformospora indica
DSM 11827]
Length = 250
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 88/203 (43%), Gaps = 18/203 (8%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG I+A+AG++ I D +G Y KV +++ L G ADG F +K
Sbjct: 14 NGGTILAIAGQDFTVIAGDTRQSEGYNIQTRYAPKVFRLTDKAVLAVNGFAADGNMFVQK 73
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPD-SGEVFLSTL 123
+ R Y + + A + LYA++ P ++ I+ G D SG V+ +
Sbjct: 74 VQQRLEWYQHAHNKEMPLRAIARLIQTMLYAKRFF-PYYVYNILGGIEDDGSGAVY--SF 130
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGI--GESFWQPGLSPE--------QLFEVCSQVV--- 170
D G R+ A G+AQ+++ + +++ L P L EV S V+
Sbjct: 131 DPVGSYEREA-CRAAGAAQSLVQPFLDNQIYFKNQLPPSGGAHPKHLPLKEVLSLVIDSF 189
Query: 171 IQACERDTKSGWGATVYVVEPDK 193
A ER + G G +Y+V K
Sbjct: 190 TGATERHIEVGDGLEIYIVTASK 212
>gi|19070763|gb|AAL83984.1| proteasome subunit [Oryza sativa]
Length = 52
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 32/52 (61%)
Query: 153 WQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
++P + PE+LFE SQ + + +RD SGWG V +V P +V R I RMD
Sbjct: 1 YKPSMEPEELFETISQALQASVDRDCLSGWGGYVLLVTPTEVQERVIKGRMD 52
>gi|169235741|ref|YP_001688941.1| proteasome beta subunit [Halobacterium salinarum R1]
gi|302595858|sp|B0R4C8.1|PSB_HALS3 RecName: Full=Proteasome subunit beta; AltName: Full=20S proteasome
beta subunit; AltName: Full=Proteasome core protein
PsmB; Flags: Precursor
gi|302595910|sp|Q9HR36.2|PSB_HALSA RecName: Full=Proteasome subunit beta; AltName: Full=20S proteasome
beta subunit; AltName: Full=Proteasome core protein
PsmB; Flags: Precursor
gi|167726807|emb|CAP13593.1| proteasome beta subunit [Halobacterium salinarum R1]
Length = 243
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 65/158 (41%), Gaps = 8/158 (5%)
Query: 39 KVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKL 98
KV ++ P+ L G F + Y A +S D + +AS L
Sbjct: 82 KVEEIQPNAALSISGSVGGAQSFIRSLRAEANLYEARRGEYMSIDALSTMASNLLRG--- 138
Query: 99 TSPLF-INPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGL 157
P F + PI+ G D G VF +LD AG T + A GS +G+ E + L
Sbjct: 139 -GPFFRVVPILGGVDDDGGHVF--SLDPAGSSMSDT-YTAQGSGMPYALGVLEQEYSEDL 194
Query: 158 SPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVT 195
+ +V + V A ERDT SG G + + D +T
Sbjct: 195 TMADAEQVAAHAVKSASERDTASGNGIHITKITHDGLT 232
>gi|410960369|ref|XP_003986764.1| PREDICTED: proteasome subunit beta type-1 [Felis catus]
Length = 241
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 88/209 (42%), Gaps = 12/209 (5%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG ++A+AG++ + D L +G K ++++ + G D + +
Sbjct: 36 NGGTVLAIAGEDFSIVASDTRLSEGYSIHTRDSPKCYRLTDKTVIGCSGFHGDCLTLTKI 95
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y S ++ AA+ S LY+R+ P ++ II G + G+ + + D
Sbjct: 96 IEARLKMYKHSNNKTMTTGAIAAMLSTILYSRRFF-PYYVYNIIGGL-DEEGKGAVYSFD 153
Query: 125 MAGCETRKTDFVAGGSAQNMIMGI---------GESFWQPGLSPEQLFEVCSQVVIQACE 175
G R + F AGGSA M+ + ++ LS ++ + V I A E
Sbjct: 154 PVGSYQRDS-FKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAE 212
Query: 176 RDTKSGWGATVYVVEPDKVTIRKIATRMD 204
RD +G + +V + + + R D
Sbjct: 213 RDVYTGDALKICIVTKEGIREETVPLRKD 241
>gi|51036691|ref|NP_001003660.1| proteasome (prosome, macropain) subunit, beta type, 9 (large
multifunctional peptidase 2) [Xenopus (Silurana)
tropicalis]
gi|37781212|gb|AAP36732.1| proteasome beta subunit [Xenopus (Silurana) tropicalis]
Length = 215
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 82/198 (41%), Gaps = 5/198 (2%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ +G D + GD + NK+ + +Y G AD A
Sbjct: 13 VSTGTTIIAVEFDGGVVVGSDSRVSAGDAVVNRVFNKLAPVHQRIYCALSGSAADAQAVA 72
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLST 122
+ + ++P P AA + + K + + I+AG+ +G T
Sbjct: 73 DMAHYHMEVHSVEMEAP--PLVLAAANLIKGISYKYKEEIVAHLIVAGWDSKNGGQVYGT 130
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGW 182
L G TR+ F GGS I G +S ++PG+S E+ + Q + A ERD SG
Sbjct: 131 L--GGMITRQP-FAIGGSGSTYIYGFVDSTFKPGMSREECEKFAVQALSLATERDGSSGG 187
Query: 183 GATVYVVEPDKVTIRKIA 200
+ V + T R I+
Sbjct: 188 VIYLVTVTKEGTTDRIIS 205
>gi|378792314|pdb|3UNB|L Chain L, Mouse Constitutive 20s Proteasome In Complex With Pr-957
gi|378792328|pdb|3UNB|Z Chain Z, Mouse Constitutive 20s Proteasome In Complex With Pr-957
gi|378792342|pdb|3UNB|NN Chain n, Mouse Constitutive 20s Proteasome In Complex With Pr-957
gi|378792356|pdb|3UNB|2 Chain 2, Mouse Constitutive 20s Proteasome In Complex With Pr-957
gi|378792370|pdb|3UNE|L Chain L, Mouse Constitutive 20s Proteasome
gi|378792384|pdb|3UNE|Z Chain Z, Mouse Constitutive 20s Proteasome
gi|378792398|pdb|3UNE|NN Chain n, Mouse Constitutive 20s Proteasome
gi|378792412|pdb|3UNE|2 Chain 2, Mouse Constitutive 20s Proteasome
gi|378792426|pdb|3UNF|L Chain L, Mouse 20s Immunoproteasome In Complex With Pr-957
gi|378792440|pdb|3UNF|Z Chain Z, Mouse 20s Immunoproteasome In Complex With Pr-957
gi|378792454|pdb|3UNH|L Chain L, Mouse 20s Immunoproteasome
gi|378792468|pdb|3UNH|Z Chain Z, Mouse 20s Immunoproteasome
Length = 213
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 93/210 (44%), Gaps = 14/210 (6%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN-KVHQMSPHLYLINPGLCADGMQFAE 63
+GG ++A+AG++ + D L +G F+I ++ K ++++ + G D + +
Sbjct: 8 NGGTVLAIAGEDFSIVASDTRLSEG-FSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 66
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y S ++ AA+ S LY+R+ P ++ II G + G+ + +
Sbjct: 67 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFF-PYYVYNIIGGL-DEEGKGAVYSF 124
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGI---------GESFWQPGLSPEQLFEVCSQVVIQAC 174
D G R + F AGGSA M+ + ++ L+ ++ + V I A
Sbjct: 125 DPVGSYQRDS-FKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLTLDRAMRLVKDVFISAA 183
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G + +V + + + R D
Sbjct: 184 ERDVYTGDALRICIVTKEGIREETVPLRKD 213
>gi|195398909|ref|XP_002058063.1| GJ15696 [Drosophila virilis]
gi|194150487|gb|EDW66171.1| GJ15696 [Drosophila virilis]
Length = 256
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 83/212 (39%), Gaps = 13/212 (6%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
+GG ++A+AG+ I D + G ++KV M+P + + GL D +
Sbjct: 47 TNGGTVLAIAGEEFVVIASDTRICSGLSIETRDQSKVFPMTPLAMVASTGLWCDTISMTS 106
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ +R Y PIS D A + S +Y R+ P I+AG +G+ +
Sbjct: 107 LLQIRIQMYEQEHNKPISTDALAQMISIVMYNRRFF-PYHTCTILAGI-DQAGKGAVYYY 164
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESF-WQ----------PGLSPEQLFEVCSQVVIQ 172
D G R V G S + ++ + W+ P L E+ + +
Sbjct: 165 DPVGHMERCRYRVLGSSGKMLLPALDHGLGWEHHTLVPPDQYPPLDKERALALARNCLRV 224
Query: 173 ACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A +RD +G + ++ D + + R D
Sbjct: 225 ASDRDLFTGDTGVLKLITKDGIETETLPLRKD 256
>gi|170291074|ref|YP_001737890.1| proteasome endopeptidase complex protein [Candidatus Korarchaeum
cryptofilum OPF8]
gi|302595814|sp|B1L6X8.1|PSB2_KORCO RecName: Full=Proteasome subunit beta 2; AltName: Full=20S
proteasome beta subunit 2; AltName: Full=Proteasome core
protein PsmB 2; Flags: Precursor
gi|170175154|gb|ACB08207.1| Proteasome endopeptidase complex [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 198
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 79/185 (42%), Gaps = 13/185 (7%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
DGG ++A D + F +++ KV ++ + + GL D + +
Sbjct: 12 DGGVVLA----------ADRRVSYNGFILSKSARKVFLINERVGVSTAGLPGDFQELVDV 61
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ Y + +P A + S LY + + + ++ G ++F+ LD
Sbjct: 62 LKYNITMYELENEKAATPTNVAKLLSILLYQGRFSGIYYAELVVGGIDNSGPKIFV--LD 119
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
AG + +F A GS + GI E F++ G+S ++ E+ + + +A RD SG G
Sbjct: 120 PAGG-LMEENFSAVGSGAQIATGILERFFKEGMSEKEAVELAERAMREAISRDALSGDGI 178
Query: 185 TVYVV 189
+ ++
Sbjct: 179 DLLII 183
>gi|296109858|ref|YP_003616807.1| proteasome endopeptidase complex, beta subunit [methanocaldococcus
infernus ME]
gi|295434672|gb|ADG13843.1| proteasome endopeptidase complex, beta subunit [Methanocaldococcus
infernus ME]
Length = 205
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 78/191 (40%), Gaps = 3/191 (1%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G + + K+ + D G+ + K++++ +L L G D +
Sbjct: 5 GTTTIGLICKDAVILAADKRASLGNLIADKNAKKIYKIDDNLALTIAGSVGDAQSLVRYL 64
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
T Y +SP + S L++ + P + I+ GF D L +LD
Sbjct: 65 TAEAKLYRMRTGKLMSPLACTTLLSNILHSSRYF-PFLVQMIVGGF--DEKGFKLYSLDP 121
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
G + DF A GS + G+ E+ ++ + ++ + + + A ERDT SG G +
Sbjct: 122 LGGVNEEKDFTATGSGSPIAYGVLEAGYKKDMDYKKGVSLVLKALQAAMERDTFSGNGVS 181
Query: 186 VYVVEPDKVTI 196
+ ++ D V I
Sbjct: 182 LALITKDGVKI 192
>gi|7242197|ref|NP_035315.1| proteasome subunit beta type-1 precursor [Mus musculus]
gi|2499837|sp|O09061.1|PSB1_MOUSE RecName: Full=Proteasome subunit beta type-1; AltName:
Full=Macropain subunit C5; AltName: Full=Multicatalytic
endopeptidase complex subunit C5; AltName:
Full=Proteasome component C5; AltName: Full=Proteasome
gamma chain; Flags: Precursor
gi|1165122|emb|CAA56701.1| component C5 of proteasome [Mus musculus]
gi|1698584|gb|AAB37251.1| proteasome beta-subunit C5 [Mus musculus]
gi|17390820|gb|AAH18351.1| Proteasome (prosome, macropain) subunit, beta type 1 [Mus musculus]
gi|26346380|dbj|BAC36841.1| unnamed protein product [Mus musculus]
gi|39754751|gb|AAR30867.1| proteasome beta-subunit C5 [Mus musculus]
gi|74198429|dbj|BAE39698.1| unnamed protein product [Mus musculus]
gi|74205097|dbj|BAE21005.1| unnamed protein product [Mus musculus]
gi|148688516|gb|EDL20463.1| proteasome (prosome, macropain) subunit, beta type 1 [Mus musculus]
Length = 240
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 93/210 (44%), Gaps = 14/210 (6%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN-KVHQMSPHLYLINPGLCADGMQFAE 63
+GG ++A+AG++ + D L +G F+I ++ K ++++ + G D + +
Sbjct: 35 NGGTVLAIAGEDFSIVASDTRLSEG-FSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 93
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y S ++ AA+ S LY+R+ P ++ II G + G+ + +
Sbjct: 94 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFF-PYYVYNIIGGL-DEEGKGAVYSF 151
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGI---------GESFWQPGLSPEQLFEVCSQVVIQAC 174
D G R + F AGGSA M+ + ++ L+ ++ + V I A
Sbjct: 152 DPVGSYQRDS-FKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLTLDRAMRLVKDVFISAA 210
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G + +V + + + R D
Sbjct: 211 ERDVYTGDALRICIVTKEGIREETVPLRKD 240
>gi|1165123|emb|CAA56702.1| component C5 of proteasome [Mus musculus]
Length = 225
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 93/210 (44%), Gaps = 14/210 (6%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN-KVHQMSPHLYLINPGLCADGMQFAE 63
+GG ++A+AG++ + D L +G F+I ++ K ++++ + G D + +
Sbjct: 20 NGGTVLAIAGEDFSIVASDTRLSEG-FSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 78
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y S ++ AA+ S LY+R+ P ++ II G + G+ + +
Sbjct: 79 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFF-PYYVYNIIGGL-DEEGKGAVYSF 136
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGI---------GESFWQPGLSPEQLFEVCSQVVIQAC 174
D G R + F AGGSA M+ + ++ L+ ++ + V I A
Sbjct: 137 DPVGSYQRDS-FKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLTLDRAMRLVKDVFISAA 195
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G + +V + + + R D
Sbjct: 196 ERDVYTGDALRICIVTKEGIREETVPLRKD 225
>gi|195398923|ref|XP_002058070.1| GJ15881 [Drosophila virilis]
gi|194150494|gb|EDW66178.1| GJ15881 [Drosophila virilis]
Length = 262
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 84/214 (39%), Gaps = 13/214 (6%)
Query: 2 SLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQF 61
S +GG ++A+AG+ I D + G ++KV M+P + + GL D +
Sbjct: 51 SDTNGGTVLAIAGEEFVVIASDTRICSGLSIETRDQSKVFPMTPLAMVASTGLWCDTISM 110
Query: 62 AEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLS 121
+ +R Y PIS D A + S +Y R+ P I+AG +G+ +
Sbjct: 111 TSLLQIRIQMYEQEHNKPISTDALAQMISIVMYNRRFF-PYHTCTILAGI-DQAGKGAVY 168
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESF-WQ----------PGLSPEQLFEVCSQVV 170
D G R V G S + ++ + W+ P L E+ + +
Sbjct: 169 YYDPVGHMERCRYRVLGSSGKMLLPALDHGLGWEHHTLVPPDQYPPLDKERALALARNCL 228
Query: 171 IQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A +RD +G + ++ D + + R D
Sbjct: 229 RVASDRDLFTGDTGVLKLITKDGIETETLPLRKD 262
>gi|37231712|gb|AAH58455.1| Proteasome (prosome, macropain) subunit, beta type 1 [Rattus
norvegicus]
gi|149047099|gb|EDL99819.1| proteasome (prosome, macropain) subunit, beta type 1, isoform CRA_a
[Rattus norvegicus]
Length = 240
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 93/210 (44%), Gaps = 14/210 (6%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN-KVHQMSPHLYLINPGLCADGMQFAE 63
+GG ++A+AG++ + D L +G F+I ++ K ++++ + G D + +
Sbjct: 35 NGGTVLAIAGEDFSIVASDTRLSEG-FSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 93
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y S ++ AA+ S LY+R+ P ++ II G + G+ + +
Sbjct: 94 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFF-PYYVYNIIGGL-DEEGKGAVYSF 151
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGI---------GESFWQPGLSPEQLFEVCSQVVIQAC 174
D G R + F AGGSA M+ + ++ L+ ++ + V I A
Sbjct: 152 DPVGSYQRDS-FKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLTLDRAMRLVKDVFISAA 210
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G + +V + + + R D
Sbjct: 211 ERDVYTGDALRICIVTKEGIREETVPLRKD 240
>gi|291414594|ref|XP_002723544.1| PREDICTED: proteasome beta 1 subunit [Oryctolagus cuniculus]
Length = 241
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 93/210 (44%), Gaps = 14/210 (6%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN-KVHQMSPHLYLINPGLCADGMQFAE 63
+GG ++A+AG++ + D L +G F+I ++ K ++++ + G D + +
Sbjct: 36 NGGTVLAIAGEDFSIVASDTRLSEG-FSIHTRDSPKCYKLTDRTVIGCSGFHGDCLTLTK 94
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y S ++ AA+ S LY+R+ P ++ II G + G+ + +
Sbjct: 95 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFF-PYYVYNIIGGL-DEEGKGAVYSF 152
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGI---------GESFWQPGLSPEQLFEVCSQVVIQAC 174
D G R + F AGGSA M+ + ++ L+ ++ + V I A
Sbjct: 153 DPVGSYQRDS-FKAGGSASAMLQPLLDNQVGFKNMQNVEHIPLTLDRAMRLVKDVFISAA 211
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G + +V + + + R D
Sbjct: 212 ERDVYTGDALRICIVTKEGIREETVPLRKD 241
>gi|448373810|ref|ZP_21557780.1| proteasome endopeptidase complex, beta subunit [Halovivax asiaticus
JCM 14624]
gi|445661181|gb|ELZ13973.1| proteasome endopeptidase complex, beta subunit [Halovivax asiaticus
JCM 14624]
Length = 242
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 71/170 (41%), Gaps = 8/170 (4%)
Query: 29 GDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAI 88
G F + KV Q+ P L G F + Y A +S D A +
Sbjct: 71 GRFVSNKNVQKVEQIHPTAALTLVGSVGGAQSFISNLRAEVNLYEARNGEDMSIDALATL 130
Query: 89 ASWELYARKLTSPLF-INPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMG 147
A +AR P F I+PI+ G + V+ ++D AG + D+ GS + G
Sbjct: 131 AGN--FARG--GPFFAIHPILGGVDDEGSHVY--SIDPAGG-VMEDDYTVTGSGMQLAYG 183
Query: 148 IGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIR 197
E ++ GLS ++ + ++ + A ERDT SG G + + D V I
Sbjct: 184 HLEQSYEDGLSNDEAMTIAARGIKSAVERDTGSGNGIFLCEITDDGVDIH 233
>gi|322370361|ref|ZP_08044920.1| proteasome endopeptidase complex, beta subunit [Haladaptatus
paucihalophilus DX253]
gi|320550069|gb|EFW91724.1| proteasome endopeptidase complex, beta subunit [Haladaptatus
paucihalophilus DX253]
Length = 240
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 70/169 (41%), Gaps = 8/169 (4%)
Query: 29 GDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAI 88
G F + KV Q+ P L G F M + + Y + +S + +
Sbjct: 69 GRFVSNKNVQKVEQIHPTAALTMAGSVGGAQSFIRTMRIESNLYESRRGEQMSMQALSTL 128
Query: 89 ASWELYARKLTSPLF-INPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMG 147
A L P F ++PI+ G + ++ +LD AG D+ GS + G
Sbjct: 129 AGNMLRG----GPFFMVSPILGGIDEEGSHIY--SLDPAGG-VMSDDYTVTGSGMQLAYG 181
Query: 148 IGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTI 196
+ E ++ GLS E+ V ++ + A ERDT SG G + + + V I
Sbjct: 182 VLEQDYEEGLSNEEAKMVAARGIKSAVERDTGSGNGVFLAEITEEGVDI 230
>gi|15790018|ref|NP_279842.1| proteasome subunit alpha [Halobacterium sp. NRC-1]
gi|10580444|gb|AAG19322.1| proteasome, subunit alpha [Halobacterium sp. NRC-1]
Length = 255
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 65/158 (41%), Gaps = 8/158 (5%)
Query: 39 KVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKL 98
KV ++ P+ L G F + Y A +S D + +AS L
Sbjct: 94 KVEEIQPNAALSISGSVGGAQSFIRSLRAEANLYEARRGEYMSIDALSTMASNLLRG--- 150
Query: 99 TSPLF-INPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGL 157
P F + PI+ G D G VF +LD AG T + A GS +G+ E + L
Sbjct: 151 -GPFFRVVPILGGVDDDGGHVF--SLDPAGSSMSDT-YTAQGSGMPYALGVLEQEYSEDL 206
Query: 158 SPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVT 195
+ +V + V A ERDT SG G + + D +T
Sbjct: 207 TMADAEQVAAHAVKSASERDTASGNGIHITKITHDGLT 244
>gi|448310400|ref|ZP_21500237.1| proteasome endopeptidase complex subunit beta [Natronolimnobius
innermongolicus JCM 12255]
gi|445608098|gb|ELY61964.1| proteasome endopeptidase complex subunit beta [Natronolimnobius
innermongolicus JCM 12255]
Length = 243
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 66/156 (42%), Gaps = 8/156 (5%)
Query: 29 GDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAI 88
G F + KV Q+ P L G F + Y A +S D A +
Sbjct: 72 GRFVSNKNVQKVEQIHPTGALTLVGSVGGAQSFISSLRAEVNLYEARRGEGMSIDALATL 131
Query: 89 ASWELYARKLTSPLF-INPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMG 147
A +AR P F I+PI+ G + V+ ++D AG K D+ GS + G
Sbjct: 132 AGN--FARG--GPFFAIHPILGGVDDEGSHVY--SIDPAGG-VMKDDYTVTGSGMQLAYG 184
Query: 148 IGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWG 183
E ++ GLS E+ + ++ + A ERDT SG G
Sbjct: 185 HLEQAYEDGLSNEEAKTIAARSIKSAAERDTGSGNG 220
>gi|66512107|ref|XP_395163.2| PREDICTED: proteasome subunit beta type-1 [Apis mellifera]
Length = 236
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 82/210 (39%), Gaps = 12/210 (5%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG+++A+AG N I D L G + K+ +S L G D +
Sbjct: 30 DNGGSVIALAGDNFCVIAADTRLSTGFSIYTREQQKLFPLSSKTVLGCSGCWCDTLTLTR 89
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
++ R Y Q + A + S LY ++ P +++ I+ G + S
Sbjct: 90 ILSARMQMYEHEHQKEMPTPAVAQMLSTMLYYKRFF-PYYVSNILGGLDENGKGCVYSYD 148
Query: 124 DMAGCETRKTDFVAGGSAQNMIM-----GIG----ESFWQPGLSPEQLFEVCSQVVIQAC 174
+ CE T + AGGSA ++ IG E L+ E+ + V A
Sbjct: 149 PIGHCEI--TKYRAGGSAGALLQPLLDNQIGYKNQEGVESVPLTQERAVAIIKDVFTSAA 206
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G + ++ D + A R D
Sbjct: 207 ERDIYTGDSIFIKIITSDGIQNFNFALRKD 236
>gi|407420511|gb|EKF38599.1| proteasome beta 6 subunit, putative,20S proteasome beta 6 subunit,
putative [Trypanosoma cruzi marinkellei]
Length = 246
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 87/213 (40%), Gaps = 16/213 (7%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN--KVHQMSPHLYLINPGLCADGMQF 61
++GG I A+AGKN +G D L GDF I ++ K+ Q++ H +L + G+ AD +Q
Sbjct: 38 DNGGTIAAIAGKNYVILGGDTRL-NGDFCIHTRDDRTKLFQLTEHTFLASTGMQADRLQL 96
Query: 62 AEKMTLRTANYVASEQSPI-SPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFL 120
+ + R Y + + S A + S LY R+ P + ++ G + G
Sbjct: 97 QQMLKYRIQWYQYNNGGKLPSTKAIAKLTSTMLYQRRFF-PYYTFNMVVGL-DEKGAGVC 154
Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQ---------PGLSPEQLFEVCSQVVI 171
+ D G T + GSA + + + + LS + E+
Sbjct: 155 YSYDPVGS-TEPFRYGTSGSASSFVEPLMDCLLTRQHMVQQAPAELSMTETLEMLKNAFT 213
Query: 172 QACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A ERD +G +++ D + R D
Sbjct: 214 GAAERDIFTGDAVCFHIITADGIRSELFELRKD 246
>gi|71654519|ref|XP_815877.1| proteasome beta 6 subunit [Trypanosoma cruzi strain CL Brener]
gi|70880966|gb|EAN94026.1| proteasome beta 6 subunit, putative [Trypanosoma cruzi]
Length = 246
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 87/213 (40%), Gaps = 16/213 (7%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN--KVHQMSPHLYLINPGLCADGMQF 61
++GG I A+AGKN +G D L GDF I ++ K+ Q++ H +L + G+ AD +Q
Sbjct: 38 DNGGTIAAIAGKNYVILGGDTRL-NGDFCIHARDDRTKLFQLTEHTFLASTGMQADRLQL 96
Query: 62 AEKMTLRTANYVASEQSPI-SPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFL 120
+ + R Y + + S A + S LY R+ P + ++ G + G
Sbjct: 97 QQMLKYRIQWYQYNNGGKLPSTKAIAKLTSTMLYQRRFF-PYYTFNMVVGL-DEKGAGVC 154
Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQ---------PGLSPEQLFEVCSQVVI 171
+ D G T + GSA + + + + LS + E+
Sbjct: 155 YSYDPVGS-TEPFRYGTSGSASSFVEPLMDCLLTRQHMVQQAPAELSMTETLEMLKNAFT 213
Query: 172 QACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A ERD +G +++ D + R D
Sbjct: 214 GAAERDIFTGDAVCFHIITADGIRSELFELRKD 246
>gi|269860537|ref|XP_002649989.1| 20S proteasome core particle subunit beta 1 [Enterocytozoon
bieneusi H348]
gi|220066608|gb|EED44084.1| 20S proteasome core particle subunit beta 1 [Enterocytozoon
bieneusi H348]
Length = 206
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 76/193 (39%), Gaps = 8/193 (4%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G I+A K+ D +G F Y +K+ Q+S ++ G+ + Q+ +++
Sbjct: 10 GTTILAFKYKDGIMFAADSRTTRGQFISCHYSDKITQISENVLCCRSGVSSH-TQYLQRV 68
Query: 66 TLRTANYVAS-EQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
R +A EQ+ S A I +Y K +I G D E++ +D
Sbjct: 69 IARECQKLARLEQTKFSIKKAANILGNIIYENK---DYLRASLILGGQDDGFEIYKIAID 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+D GS + G +++W+P + + + QVV A RD SG
Sbjct: 126 GT---VIPSDCAVAGSGSAFVYGYVDTYWKPNMELKDALDFAVQVVRLAINRDVASGGVV 182
Query: 185 TVYVVEPDKVTIR 197
V +E + R
Sbjct: 183 RVATLESNNKVTR 195
>gi|344298834|ref|XP_003421096.1| PREDICTED: proteasome subunit beta type-9-like [Loxodonta africana]
Length = 219
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 78/187 (41%), Gaps = 7/187 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ IG D + G+ + NK+ + H+Y G AD A
Sbjct: 17 VHTGTTIMAVEFDGGVIIGSDSRVSAGEAVVNRVFNKLAPLHQHIYCALSGSAADAQAVA 76
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLST 122
+ T + + + P P AA K L + ++AG+ G T
Sbjct: 77 DMATYQLELHGMELEEP--PLVLAAANVVRNITYKYREDLSAHLMVAGWDQREGGQVYGT 134
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGW 182
L+ G R+ F GGS I G ++ ++PG+SPE+ + + A RD+ S
Sbjct: 135 LE--GMLNRQP-FAIGGSGSTYIYGYVDAAYKPGMSPEECRRFTTDAITLAMSRDSSS-- 189
Query: 183 GATVYVV 189
G +Y+V
Sbjct: 190 GGIIYLV 196
>gi|406602407|emb|CCH46023.1| Proteasome subunit beta type-1-A [Wickerhamomyces ciferrii]
Length = 242
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 88/218 (40%), Gaps = 20/218 (9%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG I+ +AG++ + D G + YE KV ++ + G ADG
Sbjct: 28 DNGGTILGIAGEDFSVLAGDTRHTVGYSINSRYEPKVFDAGDNIVVSANGFSADGNALVS 87
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ Y + IS + A LY ++ P +++ IIAG D G+ + +
Sbjct: 88 RFKNHLKWYHFNNNKKISLSSAARFIQHMLYGKRFF-PYYVHTIIAGL-DDEGKGAVYSF 145
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGI------GESFWQPG-----------LSPEQLFEVC 166
D G R+ AGG+A ++IM ++ ++PG LS E++ ++
Sbjct: 146 DPVGSYEREQ-CRAGGAAASLIMPFLDNQVNFKNQYEPGTDGKVKKELKYLSLEEVIQLV 204
Query: 167 SQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A ER G G + +V D V + D
Sbjct: 205 RDAFSSATERHIHVGDGLEILIVTKDGVRTEYFDLKRD 242
>gi|307596440|ref|YP_003902757.1| Proteasome endopeptidase complex [Vulcanisaeta distributa DSM
14429]
gi|307551641|gb|ADN51706.1| Proteasome endopeptidase complex [Vulcanisaeta distributa DSM
14429]
Length = 216
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 67/156 (42%), Gaps = 6/156 (3%)
Query: 39 KVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKL 98
K+ ++ H+ G AD + + +T Y PIS A AS +++ +
Sbjct: 49 KIWKIDNHVAATMSGGVADLQKVLDALTATAIQYKIETGKPISIRALANYASLIVFSSR- 107
Query: 99 TSPL--FINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPG 156
P ++ I G+ PD G V + LD G TR+T+F+A GS G+ E ++
Sbjct: 108 --PFIYLVHMIFGGWDPDEGPV-IYMLDFFGTLTRETEFMATGSGSPTAFGVLEDGYRRD 164
Query: 157 LSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPD 192
+S E + + V A D SG G V + +
Sbjct: 165 MSIEDAIRLAVRAVRSAIYHDPGSGEGIDVVTITKE 200
>gi|147903930|ref|NP_001085540.1| proteasome (prosome, macropain) subunit, beta type, 2 [Xenopus
laevis]
gi|49119183|gb|AAH72908.1| MGC80364 protein [Xenopus laevis]
gi|77748113|gb|AAI06263.1| MGC80364 protein [Xenopus laevis]
Length = 199
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 79/188 (42%), Gaps = 5/188 (2%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
++ + G + + D + + + +K+ +MS + L+ G D +QFAE +
Sbjct: 4 LIGIQGNDFVLVAADTVCANSIIRMKQDVDKMFKMSEKILLLCVGEAGDTVQFAEYIQKN 63
Query: 69 TANYVASEQSPISPDTFAAIASWEL--YARKLTSPLFINPIIAGFYPDSGEVFLSTLDMA 126
Y +SP A L Y R T P +N ++AG+ G +A
Sbjct: 64 VQLYKMRNGYELSPTAAANFTRRNLADYLRSRT-PYHVNLLLAGYDEHEGPSLYYMDYLA 122
Query: 127 GCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATV 186
KT F A G + + I + +++P L+ E+ E+ + + + +R S TV
Sbjct: 123 ALA--KTRFAAHGYGAYLTLSILDRYYKPDLTREEAVELLKKCIAELQKRFILSLPSFTV 180
Query: 187 YVVEPDKV 194
V++ D +
Sbjct: 181 RVIDKDGI 188
>gi|341057648|gb|EGS24079.1| hypothetical protein CTHT_0000100 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 229
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 86/198 (43%), Gaps = 7/198 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
+N G +I+A+ K+ +G D G + +K+ Q+ ++ G AD A
Sbjct: 26 VNLGTSIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTQVHDTIWCCRSGSAADTQAVA 85
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSGEVFLS 121
+ + + + P + T AAI YA K L IIAG+ P G+V+
Sbjct: 86 DVVKYQLELFSMMNGRPPTTQTAAAIFQEICYANK--DMLSAGLIIAGWDPRHGGQVY-- 141
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
++ + G R+ + GGS I G ++ W+ G+S E+ + + +A + D SG
Sbjct: 142 SIPLGGSLHRQA-YAIGGSGSTYIYGYCDAHWREGMSEEEAVQFVKGALREAIKWDGSSG 200
Query: 182 WGATVYVVEPDKVTIRKI 199
G VV +K R +
Sbjct: 201 -GVIRMVVLTEKGAERHL 217
>gi|71655250|ref|XP_816231.1| proteasome beta 6 subunit [Trypanosoma cruzi strain CL Brener]
gi|70881343|gb|EAN94380.1| proteasome beta 6 subunit, putative [Trypanosoma cruzi]
Length = 246
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 87/213 (40%), Gaps = 16/213 (7%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN--KVHQMSPHLYLINPGLCADGMQF 61
++GG I A+AGKN +G D L GDF I ++ K+ Q++ H +L + G+ AD +Q
Sbjct: 38 DNGGTIAAIAGKNYVILGGDTRL-NGDFCIHARDDRTKLFQLTEHTFLASTGMQADRLQL 96
Query: 62 AEKMTLRTANYVASEQSPI-SPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFL 120
+ + R Y + + S A + S LY R+ P + ++ G + G
Sbjct: 97 QQMLKYRIQWYQYNNGGKLPSTKAIAKLTSTMLYQRRFF-PYYTFNMVVGL-DEKGAGVC 154
Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQ---------PGLSPEQLFEVCSQVVI 171
+ D G T + GSA + + + + LS + E+
Sbjct: 155 YSYDPVGS-TEPFRYGTSGSASSFVEPLMDCLLTRQHMVQQAPAELSMTETLEMLKNAFT 213
Query: 172 QACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A ERD +G +++ D + R D
Sbjct: 214 GAAERDIFTGDAVCFHIITADGIRSELFELRKD 246
>gi|149744029|ref|XP_001499422.1| PREDICTED: proteasome subunit beta type-1-like [Equus caballus]
Length = 241
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 88/209 (42%), Gaps = 12/209 (5%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG I+A+AG++ + D L +G K ++++ + G D + +
Sbjct: 36 NGGTILAIAGEDFSIVASDTRLSEGYSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKI 95
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y S ++ AA+ S LY+R+ P ++ II G + G+ + + D
Sbjct: 96 IEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFF-PYYVYNIIGGL-DEEGKGAVYSFD 153
Query: 125 MAGCETRKTDFVAGGSAQNMIMGI---------GESFWQPGLSPEQLFEVCSQVVIQACE 175
G R + F AGGSA M+ + ++ LS ++ + V I A E
Sbjct: 154 PVGSYQRDS-FKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMGLVKDVFISAAE 212
Query: 176 RDTKSGWGATVYVVEPDKVTIRKIATRMD 204
RD +G + +V + + + R D
Sbjct: 213 RDVYTGDALRICIVTKEGIREETVPLRKD 241
>gi|407462234|ref|YP_006773551.1| proteasome endopeptidase complex protein [Candidatus Nitrosopumilus
koreensis AR1]
gi|407045856|gb|AFS80609.1| proteasome endopeptidase complex protein [Candidatus Nitrosopumilus
koreensis AR1]
Length = 194
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 82/192 (42%), Gaps = 23/192 (11%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCAD----GMQ 60
DGG + A + F G+F +++ K ++P + GL AD +Q
Sbjct: 12 DGGVVFASEKRIAF----------GNFLVSKTTKKTFPITPKVGATCAGLVADMQILSLQ 61
Query: 61 FAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFL 120
A +R + + P+T A + S +Y R+ PL I+ G + +
Sbjct: 62 IAALAKIRKMEL----KRDVPPNTVAKMMSNMMYERRY-FPLLTQVIVGGVV---DKPIM 113
Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKS 180
TLD G ++ A G+ M +G+ + ++P ++ ++ ++ + V A RD+ S
Sbjct: 114 YTLDPLGS-VLPDEYAAVGTGAEMALGVLDPQFKPNMTKDEAIDLAKRAVRAASLRDSAS 172
Query: 181 GWGATVYVVEPD 192
G G + V+ D
Sbjct: 173 GDGLDILVITKD 184
>gi|16758370|ref|NP_446042.1| proteasome subunit beta type-1 precursor [Rattus norvegicus]
gi|130854|sp|P18421.3|PSB1_RAT RecName: Full=Proteasome subunit beta type-1; AltName:
Full=Macropain subunit C5; AltName: Full=Multicatalytic
endopeptidase complex subunit C5; AltName:
Full=Proteasome component C5; AltName: Full=Proteasome
gamma chain; Flags: Precursor
gi|56998|emb|CAA36987.1| proteasome subunit RC5 [Rattus norvegicus]
Length = 240
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 93/210 (44%), Gaps = 14/210 (6%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN-KVHQMSPHLYLINPGLCADGMQFAE 63
+GG ++A+AG++ + D L +G F+I ++ K ++++ + G D + +
Sbjct: 35 NGGTVLAIAGEDFSIVASDTRLSEG-FSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 93
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y S ++ AA+ S LY+R+ P ++ II G + G+ + +
Sbjct: 94 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFF-PYYVYNIIEGL-DEEGKGAVYSF 151
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGI---------GESFWQPGLSPEQLFEVCSQVVIQAC 174
D G R + F AGGSA M+ + ++ L+ ++ + V I A
Sbjct: 152 DPVGSYQRDS-FKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLTLDRAMRLVKDVFISAA 210
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G + +V + + + R D
Sbjct: 211 ERDVYTGDALRICIVTKEGIREETVPLRKD 240
>gi|294889351|ref|XP_002772769.1| proteasome subunit beta type 3, putative [Perkinsus marinus ATCC
50983]
gi|239877319|gb|EER04585.1| proteasome subunit beta type 3, putative [Perkinsus marinus ATCC
50983]
Length = 129
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
+GG+++AM G+ C I D V T++ KV+ M+ + GL D ++
Sbjct: 4 NGGSVIAMKGEGCVGIACDRRYGVNQLQTVSANMQKVYPMTSRCLVGFQGLATDSQTLSQ 63
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLS 121
+ R Y E + D + + + LY ++ P F P+IAG D GE F+S
Sbjct: 64 LLKFRLKLYKLKEDREMPCDVVSHLMATMLYEKRF-GPYFCEPVIAGLKND-GEPFIS 119
>gi|380798123|gb|AFE70937.1| proteasome subunit beta type-6, partial [Macaca mulatta]
Length = 218
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 79/180 (43%), Gaps = 6/180 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ +G D G + +K+ + H++ G AD A
Sbjct: 10 VSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVA 69
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSGEVFLS 121
+ +T + + P P A + ++ + L IIAG+ P + G+V+
Sbjct: 70 DAVTYQLGFHSIELNEP--PLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVY-- 125
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
++ M G R++ F GGS + I G ++ ++ G++ E+ + + + A ERD SG
Sbjct: 126 SVPMGGMMVRQS-FAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSG 184
>gi|297699722|ref|XP_002826924.1| PREDICTED: proteasome subunit beta type-6 [Pongo abelii]
Length = 239
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 79/180 (43%), Gaps = 6/180 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ +G D G + +K+ + H++ G AD A
Sbjct: 31 VSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVA 90
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSGEVFLS 121
+ +T + + P P A + ++ + L IIAG+ P + G+V+
Sbjct: 91 DAVTYQLGFHSIELNEP--PLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVY-- 146
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
++ M G R++ F GGS + I G ++ ++ G++ E+ + + + A ERD SG
Sbjct: 147 SVPMGGMMVRQS-FAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSG 205
>gi|291405211|ref|XP_002718873.1| PREDICTED: proteasome beta 6 subunit [Oryctolagus cuniculus]
Length = 239
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 79/180 (43%), Gaps = 6/180 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ +G D G + +K+ + H++ G AD A
Sbjct: 31 VSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVA 90
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSGEVFLS 121
+ +T + + P P A + ++ + L IIAG+ P + G+V+
Sbjct: 91 DAVTYQLGFHSIELNEP--PLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVY-- 146
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
++ M G R++ F GGS + I G ++ ++ G++ E+ + + + A ERD SG
Sbjct: 147 SVPMGGMMVRQS-FAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSG 205
>gi|332257645|ref|XP_003277915.1| PREDICTED: proteasome subunit beta type-6 isoform 1 [Nomascus
leucogenys]
gi|402898362|ref|XP_003912192.1| PREDICTED: proteasome subunit beta type-6 isoform 1 [Papio anubis]
gi|402898364|ref|XP_003912193.1| PREDICTED: proteasome subunit beta type-6 isoform 2 [Papio anubis]
gi|402898366|ref|XP_003912194.1| PREDICTED: proteasome subunit beta type-6 isoform 3 [Papio anubis]
gi|402898368|ref|XP_003912195.1| PREDICTED: proteasome subunit beta type-6 isoform 4 [Papio anubis]
gi|441662335|ref|XP_004091589.1| PREDICTED: proteasome subunit beta type-6 [Nomascus leucogenys]
gi|441662338|ref|XP_004091590.1| PREDICTED: proteasome subunit beta type-6 [Nomascus leucogenys]
Length = 239
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 79/180 (43%), Gaps = 6/180 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ +G D G + +K+ + H++ G AD A
Sbjct: 31 VSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVA 90
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSGEVFLS 121
+ +T + + P P A + ++ + L IIAG+ P + G+V+
Sbjct: 91 DAVTYQLGFHSIELNEP--PLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVY-- 146
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
++ M G R++ F GGS + I G ++ ++ G++ E+ + + + A ERD SG
Sbjct: 147 SVPMGGMMVRQS-FAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSG 205
>gi|407853394|gb|EKG06411.1| proteasome beta 6 subunit, putative,20S proteasome beta 6 subunit,
putative [Trypanosoma cruzi]
Length = 246
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 87/213 (40%), Gaps = 16/213 (7%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN--KVHQMSPHLYLINPGLCADGMQF 61
++GG I A+AGKN +G D L GDF I ++ K+ Q++ H +L + G+ AD +Q
Sbjct: 38 DNGGTIAAIAGKNYVILGGDTRL-NGDFCIHTRDDRTKLFQLTEHTFLASTGMQADRLQL 96
Query: 62 AEKMTLRTANYVASEQSPI-SPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFL 120
+ + R Y + + S A + S LY R+ P + ++ G + G
Sbjct: 97 QQMLKYRIQWYQYNNGGKLPSTKAIAKLTSTMLYQRRFF-PYYTFNMVVGL-DEKGAGVC 154
Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQ---------PGLSPEQLFEVCSQVVI 171
+ D G T + GSA + + + + LS + E+
Sbjct: 155 YSYDPVGS-TEPFRYGTSGSASSFVEPLMDCLLTRQHMVQQAPAELSMTETLEMLKNAFT 213
Query: 172 QACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A ERD +G +++ D + R D
Sbjct: 214 GAAERDIFTGDAVCFHIITADGIRSELFELRND 246
>gi|259482727|tpe|CBF77481.1| TPA: 20S proteasome beta-type subunit (Eurofung) [Aspergillus
nidulans FGSC A4]
Length = 203
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 80/193 (41%), Gaps = 10/193 (5%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
++ + G++ + ++G + ++K Q++ H + G D +QFAE +
Sbjct: 4 LLGITGRDFVILAASKAAMRGPTILKAEDDKTRQLNEHTLVAFSGEAGDTVQFAEYVQAN 63
Query: 69 TANYVASEQSPISPDTFAAIASWELYARKLTS--PLFINPIIAGFYPDSGEVFLSTLDMA 126
Y + +SP+ A EL AR L S P +N ++ G P S + L +D
Sbjct: 64 VQLYTMRNDTELSPNAVANFVRGEL-ARSLRSRNPYTVNLLLGGVDPISQKPHLYWIDYL 122
Query: 127 GCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQ---LFEVCSQVVIQACERDTKSGWG 183
+ A G AQ + + P ++ EQ L E+C+ + + D K G
Sbjct: 123 AS-LASVPYAAHGYAQYYCLSTLDKHHHPDITLEQGMKLLEMCTDELKRRLPIDYK---G 178
Query: 184 ATVYVVEPDKVTI 196
V VV D V +
Sbjct: 179 VLVKVVTKDGVRV 191
>gi|195998844|ref|XP_002109290.1| hypothetical protein TRIADDRAFT_20878 [Trichoplax adhaerens]
gi|190587414|gb|EDV27456.1| hypothetical protein TRIADDRAFT_20878 [Trichoplax adhaerens]
Length = 235
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 86/209 (41%), Gaps = 12/209 (5%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG IV +AG N + D L +G + +K+++++ +L G D +
Sbjct: 30 NGGTIVGVAGDNFAILAGDTRLSEGFMIHSRDTSKIYKLTEKTFLGTCGFQGDVLTLTRL 89
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y + +S + + S LY R+ P + I+AG D G+ + + D
Sbjct: 90 LNARLTMYEFEHRKKMSSTAISQMLSTVLYYRRF-FPYYTFNILAGIDTD-GKGCIYSYD 147
Query: 125 MAGCETRKTDFVAGGSAQNMIMGI---------GESFWQPGLSPEQLFEVCSQVVIQACE 175
G + T + A G+A +M+ + E + L+ ++ + V I A E
Sbjct: 148 AVGNYEKHT-YHASGTASSMLQPLLDNQVGYLNQEGVRRVPLTIDKARTLIKDVFISATE 206
Query: 176 RDTKSGWGATVYVVEPDKVTIRKIATRMD 204
RD +G + + D VT R D
Sbjct: 207 RDMYTGDSLHIVTITSDGVTEDHFPLRRD 235
>gi|388851885|emb|CCF54479.1| probable PRE3-20S proteasome subunit (beta1) [Ustilago hordei]
Length = 222
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 70/180 (38%), Gaps = 6/180 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
+N G +I+A+A +G D G + +K+ +S +Y G AD A
Sbjct: 17 VNLGTSIMAVAYDKGVILGADSRTTMGSYIANRVTDKLTHLSDRIYCCRSGSAADTQAIA 76
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGF-YPDSGEVFLS 121
+ +T Y +P P T A ++ + L I+AG+ D G VF
Sbjct: 77 DIVTYYLDMYAVESGAP--PQTKVAANLFQEIVYQNKDRLSAGIIVAGWDKKDGGRVFNV 134
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
L G + + GGS I G ++ W+ G E+ E + A RD SG
Sbjct: 135 PL---GGGVFEQPWAIGGSGSTYIYGYCDATWKAGWGKEKTIEFVKNALALAMRRDGSSG 191
>gi|299743502|ref|XP_001835816.2| proteasome subunit [Coprinopsis cinerea okayama7#130]
gi|298405683|gb|EAU85881.2| proteasome subunit [Coprinopsis cinerea okayama7#130]
Length = 253
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 90/199 (45%), Gaps = 18/199 (9%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG I+A+AG + I D +G Y KV +++ L G ADG F +K
Sbjct: 20 NGGTILAVAGADFTVIAGDTRQSEGYNIQTRYAPKVFKLTDKAVLAVNGFAADGNMFVKK 79
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPD-SGEVFLSTL 123
+ R Y + + + A + LYAR+ P ++ I+ G D +G V+ +
Sbjct: 80 VKQRLEWYRHAHAKDMPIRSIARLIQTMLYARRFF-PYYVYNILGGIEEDGTGAVY--SF 136
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGI--GESFWQ-----PGLS-PEQL-FEVCSQVVIQ-- 172
D G R+T A G+AQ+++ + +++ PG S P+ L + +VI
Sbjct: 137 DPVGSYERET-CRAAGAAQSLVQPFLDNQIYFKNQTPAPGTSFPQHLPLQTVLALVIDSF 195
Query: 173 --ACERDTKSGWGATVYVV 189
A ER + G G +YVV
Sbjct: 196 TGATERHIEVGDGLEMYVV 214
>gi|209733028|gb|ACI67383.1| Proteasome subunit beta type-6 precursor [Salmo salar]
Length = 232
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 83/198 (41%), Gaps = 6/198 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ IG D G + +K+ + ++ G AD A
Sbjct: 29 VSTGTTIMAVEFDGGVVIGADSRTTTGAYIANRVTDKLTPIHDRIFCCRSGSAADTQAVA 88
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGF-YPDSGEVFLS 121
+ +T + + P T A + Y + L I+AG+ G+V+
Sbjct: 89 DIVTYQLGFHSIELDEPPLVQTAANLFKQTCY--RYREELMAGIIVAGWDKRRGGQVY-- 144
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
T+ M G R+ V GGS + I G +S ++PG++ E+ C+Q + A ERD SG
Sbjct: 145 TVPMGGMIVRQPVSV-GGSGSSYIYGFMDSNYKPGMTKEECLHFCTQALALAMERDGSSG 203
Query: 182 WGATVYVVEPDKVTIRKI 199
A + + + + R +
Sbjct: 204 GVARLAAITEEGLERRVV 221
>gi|61612096|gb|AAX47290.1| proteasome beta 1 subunit [Clonorchis sinensis]
Length = 217
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 78/214 (36%), Gaps = 21/214 (9%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLY-------LINPGLCAD 57
+GG ++ ++G + + D L D N SPHLY L G D
Sbjct: 11 NGGTVMGISGDDFALLASDTRLCAEDRYFIYSRN-----SPHLYKMGNGKVLATTGFHGD 65
Query: 58 GMQFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGE 117
+ + + R Y IS + FAA+ S LY R+ P +++ I+ G + G
Sbjct: 66 VLTLTKLLENRVKTYRYDHGKEISTNAFAALLSVTLYTRRFF-PFYVSSILGGL-DEEGR 123
Query: 118 VFLSTLDMAGCETRKTDFVAGGSA-------QNMIMGIGESFWQPGLSPEQLFEVCSQVV 170
+ D G R AG S + + G S P L + ++ +
Sbjct: 124 GAVYRYDPVGSFERVKCAAAGSSGVILQPFLDHRVEGKNLSSGLPPLEKAEAIKLAKDIF 183
Query: 171 IQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
I A ERD G + V+ D + R D
Sbjct: 184 ISAAERDINCGDAVLIQVITRDGIEEFHFPLRRD 217
>gi|401411769|ref|XP_003885332.1| hypothetical protein NCLIV_057270 [Neospora caninum Liverpool]
gi|325119751|emb|CBZ55304.1| hypothetical protein NCLIV_057270 [Neospora caninum Liverpool]
Length = 75
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 160 EQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
E+L E SQ ++ A +RD +GWGA V+V+ P+K+T R++ RMD
Sbjct: 31 EELMETLSQSLLAAVDRDCVAGWGAVVHVMTPNKITTRQLKCRMD 75
>gi|209732878|gb|ACI67308.1| Proteasome subunit beta type-6 precursor [Salmo salar]
Length = 232
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 83/198 (41%), Gaps = 6/198 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ IG D G + +K+ + ++ G AD A
Sbjct: 29 VSTGTTIMAVEFDGGVVIGADSRTTTGAYIANRVTDKLTPIHDRIFCCRSGSAADTQAVA 88
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGF-YPDSGEVFLS 121
+ +T + + P T A + Y + L I+AG+ G+V+
Sbjct: 89 DIVTYQLGFHSIELDEPPLVQTAANLFKQTCY--RYREELMAGIIVAGWDKRRGGQVY-- 144
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
T+ M G R+ V GGS + I G +S ++PG++ E+ C+Q + A ERD SG
Sbjct: 145 TVPMGGMIVRQPVSV-GGSGSSYIYGFMDSNYKPGMTKEECLHFCTQALALAMERDGSSG 203
Query: 182 WGATVYVVEPDKVTIRKI 199
A + + + + R +
Sbjct: 204 GVARLAAITEEGLERRVV 221
>gi|432867841|ref|XP_004071304.1| PREDICTED: proteasome subunit beta type-6-like [Oryzias latipes]
Length = 232
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 84/198 (42%), Gaps = 6/198 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ +G D G + +K+ ++ +Y G AD A
Sbjct: 29 VSTGTTIMAVEYDGGVVVGADSRTTTGAYIANRVTDKLTRIHDRIYCCRSGSAADTQAIA 88
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGF-YPDSGEVFLS 121
E ++ + + P +T A + Y + L ++AG+ G+V+
Sbjct: 89 EVVSYQLGFHSIELDEPPLVETAAHLFRASCY--RYREELMAGILVAGWDRRKGGQVYC- 145
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
+ + G R+ V GGS + I G +S ++PGLS +Q ++ ++ + A ERD SG
Sbjct: 146 -VPIGGMLVRQPVSV-GGSGSSYIYGFMDSNYKPGLSKDQCLDLTTKALTLAMERDGSSG 203
Query: 182 WGATVYVVEPDKVTIRKI 199
+ + D V R I
Sbjct: 204 GVVRLATISEDGVERRVI 221
>gi|296202288|ref|XP_002748328.1| PREDICTED: proteasome subunit beta type-6 [Callithrix jacchus]
gi|403279806|ref|XP_003931435.1| PREDICTED: proteasome subunit beta type-6 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 239
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 79/180 (43%), Gaps = 6/180 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ +G D G + +K+ + H++ G AD A
Sbjct: 31 VSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVA 90
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSGEVFLS 121
+ +T + + P P A + ++ + L IIAG+ P + G+V+
Sbjct: 91 DAVTYQLGFHSIELNEP--PLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVY-- 146
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
++ M G R++ F GGS + I G ++ ++ G++ E+ + + + A ERD SG
Sbjct: 147 SVPMGGMMVRQS-FAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSG 205
>gi|303314849|ref|XP_003067433.1| proteasome component, putative [Coccidioides posadasii C735 delta
SOWgp]
gi|240107101|gb|EER25288.1| proteasome component, putative [Coccidioides posadasii C735 delta
SOWgp]
gi|320037788|gb|EFW19725.1| proteasome component Pre1 [Coccidioides posadasii str. Silveira]
Length = 205
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 80/191 (41%), Gaps = 10/191 (5%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
++ + GK+ I ++G + ++K +++ H L G D +QFAE +
Sbjct: 4 LLGITGKDFTLIAASKAAMRGPTILKSTDDKTRKLNKHTLLAYSGEAGDTVQFAEYIQAN 63
Query: 69 TANYVASEQSPISPDTFAAIASWELYARKL--TSPLFINPIIAGFYPDSGEVFLSTLDMA 126
Y ++ +SP A EL AR L SP +N ++ G P + + L LD
Sbjct: 64 AQLYSMRNETELSPSAVANFVRGEL-ARSLRSRSPYTVNLLLGGVDPITQKPSLYWLDYL 122
Query: 127 GCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQ---LFEVCSQVVIQACERDTKSGWG 183
+ + A G AQ + I + P +S E+ L E C+ + + D K G
Sbjct: 123 AS-LAQVPYAAHGYAQYYCLSILDKHHHPDISYEEGLKLLEKCTDELKRRLPIDFK---G 178
Query: 184 ATVYVVEPDKV 194
V VV D +
Sbjct: 179 VFVKVVTKDGI 189
>gi|119501034|ref|XP_001267274.1| proteasome component Pre1, putative [Neosartorya fischeri NRRL 181]
gi|119415439|gb|EAW25377.1| proteasome component Pre1, putative [Neosartorya fischeri NRRL 181]
Length = 212
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 79/191 (41%), Gaps = 10/191 (5%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
++ + GK+ + ++G + ++K Q+S H + G D +QFAE +
Sbjct: 13 LLGITGKDFVILAASKAAMRGPTILKAEDDKTRQLSQHTLMAFSGEAGDTVQFAEYIQAN 72
Query: 69 TANYVASEQSPISPDTFAAIASWELYARKLTS--PLFINPIIAGFYPDSGEVFLSTLDMA 126
A Y + + P+ A EL AR L S P +N ++ G + E L +D
Sbjct: 73 VALYTMRNDTELRPNAVANFVRGEL-ARSLRSRNPYTVNLLLGGVDSITEEPHLYWIDYL 131
Query: 127 GCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQ---LFEVCSQVVIQACERDTKSGWG 183
R + A G AQ + I + +S EQ L ++C+ + + D K G
Sbjct: 132 SALAR-VPYAAHGYAQYYCLSILDKHHHSDISLEQGMKLLQMCTDELKRRLPIDYK---G 187
Query: 184 ATVYVVEPDKV 194
V VV D V
Sbjct: 188 LLVKVVTKDGV 198
>gi|307611968|ref|NP_001182643.1| proteasome (prosome, macropain) subunit, beta type, 6 [Macaca
mulatta]
gi|355568119|gb|EHH24400.1| hypothetical protein EGK_08055 [Macaca mulatta]
Length = 239
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 79/180 (43%), Gaps = 6/180 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ +G D G + +K+ + H++ G AD A
Sbjct: 31 VSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVA 90
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSGEVFLS 121
+ +T + + P P A + ++ + L IIAG+ P + G+V+
Sbjct: 91 DAVTYQLGFHSIELNEP--PLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVY-- 146
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
++ M G R++ F GGS + I G ++ ++ G++ E+ + + + A ERD SG
Sbjct: 147 SVPMGGMMVRQS-FAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSG 205
>gi|409078521|gb|EKM78884.1| hypothetical protein AGABI1DRAFT_114444 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426199530|gb|EKV49455.1| 20S proteasome subunit [Agaricus bisporus var. bisporus H97]
Length = 194
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 76/188 (40%), Gaps = 8/188 (4%)
Query: 11 AMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTA 70
A+ GK + D + + E+K+ +SPHL + G D +QFAE +
Sbjct: 6 ALIGKGYVIVAADTTSARSIVKMKNDEDKIKTVSPHLLMTYSGEPGDTVQFAEYIERNLR 65
Query: 71 NYVASEQSPISPDTFAAIASW--ELYARKLTS--PLFINPIIAGFYPDSGEVFLSTLDMA 126
Y P+ P AA +SW A L S P +N ++ G+ E L +D
Sbjct: 66 LYQIRNIYPLRP---AAASSWIRRSLAESLRSRHPYSVNLLLGGYDTSLSEPKLYWIDYL 122
Query: 127 GCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATV 186
G T + F A G ++ + + + P E+ E + + + +R S V
Sbjct: 123 GTVT-EVPFAAHGYGSYFVLSLMDRYHDPEAPLEEGLETLKKCIQEVSKRLIVSPERYKV 181
Query: 187 YVVEPDKV 194
+V+ D V
Sbjct: 182 KIVDKDGV 189
>gi|320101454|ref|YP_004177046.1| proteasome endopeptidase complex subunit beta [Desulfurococcus
mucosus DSM 2162]
gi|319753806|gb|ADV65564.1| proteasome endopeptidase complex, beta component [Desulfurococcus
mucosus DSM 2162]
Length = 209
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 66/153 (43%), Gaps = 4/153 (2%)
Query: 31 FTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAIAS 90
F ++ K+H ++ H+ + GL D + + L NY I + A + S
Sbjct: 32 FVLSRNARKIHMVTDHVGVGFAGLMGDVGFLVKVLRLEAKNYELQHGREIRARSMAKLLS 91
Query: 91 WELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGE 150
LY KL +P+ ++ GF + +++ LD G + +VA GS + +G E
Sbjct: 92 LILYNYKL-APMLTEVVVGGFDDEGPSLYI--LDPVGSLIEEK-YVAVGSGAQLALGYIE 147
Query: 151 SFWQPGLSPEQLFEVCSQVVIQACERDTKSGWG 183
+ P ++ + E+ + ERD SG G
Sbjct: 148 PRYSPSITLAEAEELAVNAIRTVVERDVLSGDG 180
>gi|355753644|gb|EHH57609.1| hypothetical protein EGM_07288 [Macaca fascicularis]
Length = 239
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 79/180 (43%), Gaps = 6/180 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ +G D G + +K+ + H++ G AD A
Sbjct: 31 VSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVA 90
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSGEVFLS 121
+ +T + + P P A + ++ + L IIAG+ P + G+V+
Sbjct: 91 DAVTYQLGFHSIELNEP--PLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVY-- 146
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
++ M G R++ F GGS + I G ++ ++ G++ E+ + + + A ERD SG
Sbjct: 147 SVPMGGMMVRQS-FAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSG 205
>gi|261188327|ref|XP_002620579.1| proteasome component [Ajellomyces dermatitidis SLH14081]
gi|239593258|gb|EEQ75839.1| proteasome component [Ajellomyces dermatitidis SLH14081]
Length = 198
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 75/186 (40%), Gaps = 7/186 (3%)
Query: 15 KNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVA 74
K+ +G D G + +K+ Q+ ++ G AD A+ ++ Y
Sbjct: 6 KDGVILGADSRTTTGAYIANRVTDKLTQVHDTIWCCRSGSAADTQAIADIVSYHLGMYGV 65
Query: 75 SEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSGEVFLSTLDMAGCETRKT 133
Q P + T AA+ Y K L IIAG+ P G+V+ L G K
Sbjct: 66 VNQEPPTTQTAAALFQELCYDNK--DMLSAGIIIAGYDPRHGGQVYSIPL---GGSLHKQ 120
Query: 134 DFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDK 193
+ GGS I G ++ W+ G++ E+ E + +A + D SG G VV K
Sbjct: 121 SYAIGGSGSTYIYGYCDAKWREGMTEEEGIEFVKTSLQEAIKWDGSSG-GVIRMVVLTAK 179
Query: 194 VTIRKI 199
+R +
Sbjct: 180 GAVRHL 185
>gi|448362754|ref|ZP_21551358.1| proteasome endopeptidase complex subunit beta [Natrialba asiatica
DSM 12278]
gi|445647376|gb|ELZ00350.1| proteasome endopeptidase complex subunit beta [Natrialba asiatica
DSM 12278]
Length = 243
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 66/156 (42%), Gaps = 8/156 (5%)
Query: 29 GDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAI 88
G F + KV Q+ P L G F + Y A +S D A +
Sbjct: 72 GRFVSNKNVQKVEQIHPTGALTMVGSVGGAQSFISSLRAEVNLYGARRGEAMSIDALATL 131
Query: 89 ASWELYARKLTSPLF-INPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMG 147
A +AR P F I+PI+ G + V+ ++D AG + D+ GS + G
Sbjct: 132 AGN--FARG--GPFFAIHPILGGVDSEGSHVY--SIDPAGG-VMEDDYTVTGSGMQLAYG 184
Query: 148 IGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWG 183
+ E ++ GLS + + ++ + A ERDT SG G
Sbjct: 185 LLEQEYEDGLSNDDATTIAARAIKSAAERDTGSGNG 220
>gi|391339580|ref|XP_003744126.1| PREDICTED: proteasome subunit beta type-6-like [Metaseiulus
occidentalis]
Length = 212
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 80/197 (40%), Gaps = 4/197 (2%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G +VA K+ I D G + +K+ +++ +Y G AD A
Sbjct: 9 ISTGTTLVAAHFKDGIVIAADSRTSSGSYVANRVADKLTKITDSIYCCRSGSAADTQCIA 68
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLST 122
+ + A Y P + + A + Y K + I AG+ + G S
Sbjct: 69 DAVAYHLAFYEMQTGKPATVEAAANVFRNICY--KYRDDMVAGIICAGYDDERGGGIYS- 125
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGW 182
+ GC + ++ GS I G ++ ++ +S E+ ++C + V A +DT SG
Sbjct: 126 IPPGGCLVEEKRVISAGSGSVFISGFLDALFKNNMSKEECVDLCLKAVSLAIHKDTSSGG 185
Query: 183 GATVYVVEPDKVTIRKI 199
+ V+ D V RK+
Sbjct: 186 VCRMAVITKDGVE-RKL 201
>gi|444722976|gb|ELW63648.1| Proteasome subunit beta type-6 [Tupaia chinensis]
Length = 239
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 79/180 (43%), Gaps = 6/180 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ +G D G + +K+ + H++ G AD A
Sbjct: 31 VSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVA 90
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSGEVFLS 121
+ +T + + P P A + ++ + L I+AG+ P + G+V+
Sbjct: 91 DAVTYQLGFHSIELNEP--PLVHTAASLFKEMCYRYREDLMAGIIVAGWDPQEGGQVY-- 146
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
++ M G R++ F GGS + I G ++ ++ G++ E+ + + + A ERD SG
Sbjct: 147 SVPMGGMMVRQS-FAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSG 205
>gi|209735834|gb|ACI68786.1| Proteasome subunit beta type-6 precursor [Salmo salar]
Length = 232
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 81/197 (41%), Gaps = 4/197 (2%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ IG D G + +K+ + ++ G AD A
Sbjct: 29 VSTGTTIMAVEFDGGVVIGADSRTTTGAYIANRVTDKLTPIHDRIFCCRSGSAADTQAVA 88
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLST 122
+ +T + + P T A + Y + L I+AG+ G + T
Sbjct: 89 DIVTYQLGFHSIELDEPPLVQTAANLFKQTCY--RYREELMAGIIVAGWDKRRGGQ-VHT 145
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGW 182
+ M G R+ V GGS + I G +S ++PG++ E+ C+Q + A ERD SG
Sbjct: 146 VPMGGMIVRQPVSV-GGSGSSYIYGFMDSNYKPGMTKEECLHFCTQALALAMERDGSSGG 204
Query: 183 GATVYVVEPDKVTIRKI 199
A + + + + R +
Sbjct: 205 VARLAAITEEGLERRVV 221
>gi|341581964|ref|YP_004762456.1| proteasome subunit beta 1 [Thermococcus sp. 4557]
gi|340809622|gb|AEK72779.1| proteasome subunit beta 1 [Thermococcus sp. 4557]
Length = 203
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 77/187 (41%), Gaps = 5/187 (2%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G V + K+ + D G+ ++E KV + HL L G D + +
Sbjct: 7 GTTTVGIVCKDGVVLAADRRASLGNMVLSENVTKVFWIDDHLALAGAGSVGDILSLVRLL 66
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
Y A +S A + S L+ + P F +IAG +GE L ++DM
Sbjct: 67 RAEAKLYRAKVGKEMSVKALATLTSNVLHGSRFM-PYFGWFLIAG---HTGEPGLYSVDM 122
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
AG T + F A GS I E+ ++ ++ E+ ++ + + A RD +G G T
Sbjct: 123 AGGVT-EDRFTAAGSGMEFAFSILEAEFKENMTLEEGVKLALRAIKAATRRDVFTGGGVT 181
Query: 186 VYVVEPD 192
+ V +
Sbjct: 182 LVTVTDE 188
>gi|386876203|ref|ZP_10118332.1| putative proteasome endopeptidase complex, beta subunit [Candidatus
Nitrosopumilus salaria BD31]
gi|386805984|gb|EIJ65474.1| putative proteasome endopeptidase complex, beta subunit [Candidatus
Nitrosopumilus salaria BD31]
Length = 194
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 84/194 (43%), Gaps = 23/194 (11%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
DGG + A + F G+F +++ K ++ + GL AD MQ
Sbjct: 12 DGGVVFASEKRIAF----------GNFLVSKSTKKTFPITSQVGATCAGLVAD-MQI--- 57
Query: 65 MTLRTANYVASEQ----SPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFL 120
+TL+ A + + P+T A + S +Y R+ PL I+ G + +
Sbjct: 58 LTLQIAALAKIRKMELKRDVPPNTIAKMMSNMMYERRYF-PLLTQVIVGGVV---DKPIM 113
Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKS 180
TLD G ++ A G+ M +G+ + ++P +S ++ ++ + V A RD+ S
Sbjct: 114 YTLDPLGS-VLPDEYAAVGTGAEMALGVLDPQYKPNMSKDEAIDLAKRAVRSAALRDSAS 172
Query: 181 GWGATVYVVEPDKV 194
G G + V+ D +
Sbjct: 173 GDGIDILVITKDGI 186
>gi|366993743|ref|XP_003676636.1| hypothetical protein NCAS_0E02070 [Naumovozyma castellii CBS 4309]
gi|342302503|emb|CCC70277.1| hypothetical protein NCAS_0E02070 [Naumovozyma castellii CBS 4309]
Length = 195
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 86/196 (43%), Gaps = 12/196 (6%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
I+ + ++ + + +G + + ++K Q+SPH + G D +QFAE +
Sbjct: 4 ILGIRVQDAVILASSKAVTRGISVLKDTDDKTRQLSPHTLMSFTGESGDTVQFAEYIQAN 63
Query: 69 TANYVASEQSPISPDTFAAIASWELYARKLTS--PLFINPIIAGFYPDSGEVFLSTLDMA 126
Y E +SP ++ EL A+ + S P +N +I GF + L +D
Sbjct: 64 IQLYAIREDYELSPKAVSSFVRQEL-AKSIRSRKPYQVNVLIGGFDSKLNKPNLYQIDYL 122
Query: 127 GCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQ---LFEVCSQVVIQACERDTKSGWG 183
G + + + A G + + + ++P ++ E+ L ++C I+ ER +
Sbjct: 123 GTKV-ELPYAAHGYSGFYTFSLLDHHYRPDMTTEEGLKLLKLC----IEELERRMPVDFK 177
Query: 184 ATVYVVEPDKVTIRKI 199
VYV DK IR++
Sbjct: 178 G-VYVKIVDKDGIRQL 192
>gi|239614938|gb|EEQ91925.1| proteasome component [Ajellomyces dermatitidis ER-3]
Length = 198
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 75/186 (40%), Gaps = 7/186 (3%)
Query: 15 KNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVA 74
K+ +G D G + +K+ Q+ ++ G AD A+ ++ Y
Sbjct: 6 KDGVILGADSRTTTGAYIANRVTDKLTQVHDTIWCCRSGSAADTQAVADIVSYHLGMYGV 65
Query: 75 SEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSGEVFLSTLDMAGCETRKT 133
Q P + T AA+ Y K L IIAG+ P G+V+ L G K
Sbjct: 66 VNQEPPTTQTAAALFQELCYDNK--DMLSAGIIIAGYDPRHGGQVYSIPL---GGSLHKQ 120
Query: 134 DFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDK 193
+ GGS I G ++ W+ G++ E+ E + +A + D SG G VV K
Sbjct: 121 SYAIGGSGSTYIYGYCDAKWREGMTEEEGIEFVKTSLQEAIKWDGSSG-GVIRMVVLTAK 179
Query: 194 VTIRKI 199
+R +
Sbjct: 180 GAVRHL 185
>gi|168019760|ref|XP_001762412.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686490|gb|EDQ72879.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 237
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/214 (20%), Positives = 86/214 (40%), Gaps = 16/214 (7%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
N+GG VA+AG + I D + G + +K+H ++ L + G AD +
Sbjct: 27 NNGGTCVAIAGADYCVIAADTRMSTGFSILTRDYSKIHHITEKCVLASSGFQADVRSLQK 86
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y +S A + S LY ++ P + ++ G + G+ + T
Sbjct: 87 NLDARHQIYQHQHSKQMSCPAMAQLLSNTLYYKRFF-PYYSFNVLGGL-DNEGKGCVYTY 144
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPG-------------LSPEQLFEVCSQVV 170
D G R + + + GS Q +IM + ++ + L+ + ++
Sbjct: 145 DAVGSYER-SGYSSQGSGQTLIMPVLDNQLKSASPLVLPPRESSTPLTESEAVDLIKDTF 203
Query: 171 IQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A ERD +G G + ++ + + +A + D
Sbjct: 204 ASAAERDIYTGDGVEIVIINKEGIRRETMALKRD 237
>gi|384247128|gb|EIE20616.1| proteasome-domain-containing protein [Coccomyxa subellipsoidea
C-169]
Length = 236
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 74/190 (38%), Gaps = 6/190 (3%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G I+A +G D G++ +KV Q++ +Y+ G AD + +
Sbjct: 22 GTTIMAATFDGGVVLGADSRTSTGNYIANRVTDKVTQLTDRVYVCRSGSAADTQAISSYV 81
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGF-YPDSGEVFLSTLD 124
+ I T A +A+ +Y+ K L I+AG+ + G+V+ L
Sbjct: 82 QYYLHQHQMELNDEILVKTAATLATKLVYSNK--EMLQAGLIVAGYDSREGGQVYALPL- 138
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G K F GGS I G + W+PG+S E + V A RD SG
Sbjct: 139 --GGTLVKVPFSIGGSGSAYIYGFCDKNWRPGMSEEDCQAFVVKAVGLALARDGSSGGCI 196
Query: 185 TVYVVEPDKV 194
V+ D V
Sbjct: 197 RTVVITKDGV 206
>gi|449548524|gb|EMD39490.1| hypothetical protein CERSUDRAFT_80861 [Ceriporiopsis subvermispora
B]
Length = 252
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 87/200 (43%), Gaps = 18/200 (9%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG I+A+AG + I D +G Y KV +++ L G ADG F +
Sbjct: 19 DNGGTILAIAGADFTVIAGDTRQSEGYSIQTRYAPKVFRLTDRAVLAVNGFAADGNMFVK 78
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPD-SGEVFLST 122
K+ R Y + + A + LYA++ P ++ I+ G D SG V+ +
Sbjct: 79 KVKQRLEWYRHAHAKDMPLRAIARLIQTMLYAQRFF-PYYVYNILGGIEEDGSGAVY--S 135
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGES---FWQPGLSPEQ-------LFEVCSQVV-- 170
D G R+ A G+AQ+++ ++ F +P Q L +V + V+
Sbjct: 136 FDPVGSYEREA-CRAAGAAQSLVQPFLDNQIYFKNQAAAPNQPHPAHLPLSDVLAIVIDS 194
Query: 171 -IQACERDTKSGWGATVYVV 189
A ER + G G +YVV
Sbjct: 195 FTSATERHIEVGDGLEIYVV 214
>gi|448301508|ref|ZP_21491501.1| proteasome endopeptidase complex subunit beta [Natronorubrum
tibetense GA33]
gi|445584244|gb|ELY38568.1| proteasome endopeptidase complex subunit beta [Natronorubrum
tibetense GA33]
Length = 243
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 71/170 (41%), Gaps = 8/170 (4%)
Query: 29 GDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAI 88
G F + KV Q+ P L G F + Y A +S D A +
Sbjct: 72 GRFVSNKNVQKVEQIHPTGALTLVGSVGGAQSFISSLRAEVNLYEARRGEDMSIDALATL 131
Query: 89 ASWELYARKLTSPLF-INPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMG 147
A +AR P F I+PI+ G + V+ ++D AG K D+ GS + G
Sbjct: 132 AGN--FARG--GPFFAIHPILGGVDDEGSHVY--SIDPAGG-VMKDDYTVTGSGMQLAYG 184
Query: 148 IGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIR 197
E ++ GLS ++ + ++ + A ERDT SG G + + + V I
Sbjct: 185 HLEQAYEDGLSNDEAKTIAARSIKSAAERDTGSGNGVFLCEITDEGVDIH 234
>gi|229366584|gb|ACQ58272.1| Proteasome subunit beta type-1-A [Anoplopoma fimbria]
Length = 237
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 90/209 (43%), Gaps = 12/209 (5%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG ++A+AG++ + D L +G + K ++++ + G D + +
Sbjct: 32 NGGTVLAVAGEDFAIVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDCLTLTKI 91
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y S ++ + AA+ S LY R P ++ II G + G+ + + D
Sbjct: 92 IDARLKMYKHSNNKTMTSNAIAAMLSTILYGRGFF-PYYVYNIIGGL-DEHGKGAVYSFD 149
Query: 125 MAGCETRKTDFVAGGSAQNMIM-----GIG----ESFWQPGLSPEQLFEVCSQVVIQACE 175
G R T + AGGSA ++ IG E L+ ++ ++ V I A E
Sbjct: 150 PVGSYQRDT-YKAGGSASAVLQPLLDNQIGFKNMEGVQHVPLTQDKAVQLVKDVFISAAE 208
Query: 176 RDTKSGWGATVYVVEPDKVTIRKIATRMD 204
RD G V ++ + ++ + + R D
Sbjct: 209 RDVYIGDALRVCIITKEGISEQTVPLRKD 237
>gi|223974055|gb|ACN31215.1| unknown [Zea mays]
Length = 53
Score = 50.1 bits (118), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 153 WQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
++P + P++LFE SQ + + +RD SGWG V +V P +V I +RMD
Sbjct: 2 YKPDMQPDELFETISQALNSSVDRDCLSGWGGYVLIVTPTEVREHVIKSRMD 53
>gi|302688009|ref|XP_003033684.1| hypothetical protein SCHCODRAFT_66433 [Schizophyllum commune H4-8]
gi|300107379|gb|EFI98781.1| hypothetical protein SCHCODRAFT_66433 [Schizophyllum commune H4-8]
Length = 274
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 88/220 (40%), Gaps = 38/220 (17%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG ++A+AG + I D +G Y KVH+++ L G ADG F +
Sbjct: 20 DNGGTVLAIAGSDFSVIAGDTRQSEGYNIQTRYAPKVHRLTNKAVLAVTGFAADGNTFVK 79
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAG------------- 110
K+ R Y + + A + LY R+ P ++ I+ G
Sbjct: 80 KLKQRLEWYHHAHAKNMPLQAVARLIQTMLYGRRFF-PFYVYIILGGIEEDGTRHRSSRS 138
Query: 111 --------FYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMI-------MGIGESFWQP 155
+P SG V+ + D G R+T A G+AQ+++ + QP
Sbjct: 139 HTHRPTFFLFPGSGSVY--SFDPVGSYERET-CRAAGAAQSLLQPFLDNQIYFKNQIPQP 195
Query: 156 GLS-PEQ--LFEVCSQVV---IQACERDTKSGWGATVYVV 189
G + P L V S V+ A ER + G G VY+V
Sbjct: 196 GTTHPAHLPLPHVLSLVIDSFTSATERHIEVGDGLEVYIV 235
>gi|58332308|ref|NP_001011057.1| proteasome (prosome, macropain) subunit, beta type, 2 [Xenopus
(Silurana) tropicalis]
gi|54038181|gb|AAH84185.1| hypothetical LOC496467 [Xenopus (Silurana) tropicalis]
gi|89266833|emb|CAJ83920.1| proteasome (prosome macropain) subunit beta type 2 [Xenopus
(Silurana) tropicalis]
Length = 199
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 77/188 (40%), Gaps = 5/188 (2%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
++ + G + + D + + +K+ +MS + L+ G D +QFAE +
Sbjct: 4 LIGIQGNDFVLVAADTVCANSIIKMKHDVDKMFKMSEKILLLCVGEAGDTVQFAEYIQKN 63
Query: 69 TANYVASEQSPISPDTFAAIASWEL--YARKLTSPLFINPIIAGFYPDSGEVFLSTLDMA 126
Y +SP A L Y R T P +N ++AG+ G +A
Sbjct: 64 VQLYKMRNGYELSPTAAANFTRRNLADYLRSRT-PYHVNLLLAGYDEHDGPSLYYMDYLA 122
Query: 127 GCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATV 186
KT F A G + + I + +++P L+ E E+ + + + +R S TV
Sbjct: 123 ALA--KTRFAAHGYGAYLTLSILDRYYKPDLTREDAVELLKKCIAELQKRFILSLPSFTV 180
Query: 187 YVVEPDKV 194
V++ D +
Sbjct: 181 RVIDKDGI 188
>gi|380018248|ref|XP_003693045.1| PREDICTED: LOW QUALITY PROTEIN: proteasome subunit beta type-1-like
[Apis florea]
Length = 237
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 82/210 (39%), Gaps = 12/210 (5%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
N G +++A+AG N I D L G + K+ +S L G D +
Sbjct: 31 NGGKSVIALAGDNFCVIAADTRLSTGFSIYTREQQKLXPLSSKTVLGCSGCWCDTLTLTR 90
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
++ R Y Q + A + S LY ++ P +++ I+ G + S
Sbjct: 91 ILSARMQMYEHEHQKEMPTPAVAQMLSTMLYYKRFF-PYYVSNILGGLDENGKGCVYSYD 149
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFW----QPGLSP-----EQLFEVCSQVVIQAC 174
+ CE T + AGGSA ++ + ++ Q G+ P E+ + V A
Sbjct: 150 PIGHCEI--TKYRAGGSAGALLQPLLDNQIGYKNQEGVEPVPLTQERAVAIIKDVFTSAA 207
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G + ++ D + A R D
Sbjct: 208 ERDIYTGDSIFIKIITSDGIQNFSFALRKD 237
>gi|448328326|ref|ZP_21517639.1| proteasome endopeptidase complex, beta subunit [Natrinema
versiforme JCM 10478]
gi|445616132|gb|ELY69764.1| proteasome endopeptidase complex, beta subunit [Natrinema
versiforme JCM 10478]
Length = 243
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 71/170 (41%), Gaps = 8/170 (4%)
Query: 29 GDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAI 88
G F + KV Q+ P L G F + Y A +S D A +
Sbjct: 72 GRFVSNKNVQKVEQIHPTAALTLVGSVGGAQSFISTLRAEVNLYEARRGEGMSIDALATL 131
Query: 89 ASWELYARKLTSPLF-INPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMG 147
A +AR P F I+PI+ G + V+ ++D AG + D+ GS + G
Sbjct: 132 AGN--FARG--GPFFAIHPILGGVDEEGSHVY--SIDPAGG-VMEDDYTVTGSGMQLAYG 184
Query: 148 IGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIR 197
E ++P +S E+ V ++ + A ERDT SG G + + + V I
Sbjct: 185 HLEQAYEPDMSNEEAKTVAARGIKSAVERDTGSGNGVFLAEITDEGVDIH 234
>gi|328868192|gb|EGG16572.1| proteasome subunit beta type 1 [Dictyostelium fasciculatum]
Length = 236
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 88/213 (41%), Gaps = 14/213 (6%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTI-AEYENKVHQMSPHLYLINPGLCADGMQF 61
+++GG ++A+AG N + D + G + I + KV +++ + G+ AD +
Sbjct: 27 VDNGGTVLAVAGSNYCIVAGDTRMSDGGYGIQTRHYTKVFKLTDKCVIATSGMQADTIAL 86
Query: 62 AEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLS 121
+++ + Y +S A S LY ++ P + ++AG D G +
Sbjct: 87 RKRLDTQLRQYERDHGKSMSTPAIAQFLSNTLYHKRFF-PFYTFNLVAGVDED-GIGCVW 144
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGES----FWQP------GLSPEQLFEVCSQVVI 171
T D G R F + GS +I + ++ F Q LS EQ + +
Sbjct: 145 TYDAVGSHER-VRFSSQGSGNQLIQPLLDNQVGKFNQQIVDGPRELSAEQALSLVKDAIT 203
Query: 172 QACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A ERD +G A + ++ V K ++D
Sbjct: 204 SAGERDIYTGDFADIVTIDQKGVHFEKFDLKLD 236
>gi|37781216|gb|AAP36733.1| proteasome beta subunit [Xenopus (Silurana) tropicalis]
gi|165970624|gb|AAI58548.1| Unknown (protein for MGC:186705) [Xenopus (Silurana) tropicalis]
Length = 215
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 82/194 (42%), Gaps = 13/194 (6%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ +G D + GD + NK+ + +Y G AD A
Sbjct: 13 VSTGTTIIAVEFDGGVVVGSDSRVSAGDAVVNRVFNKLAPVHQRIYCALSGSAADAQAVA 72
Query: 63 EKMTLRTANY---VASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
+ A+Y V S + SP AA + + K + + I+AG+ +G
Sbjct: 73 D-----MAHYHMEVHSIEMEASPLVLAAANLIKGISYKYKEEIAAHLIVAGWDSKNGGQV 127
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
TL G TR+ F GGS I G +S ++PG+S E+ Q + A ERD
Sbjct: 128 YGTL--GGMITRQP-FAIGGSGSTYIYGFVDSTFKPGMSREECETFAVQALSLAMERDGS 184
Query: 180 SGWGATVYVVEPDK 193
S G +Y+V K
Sbjct: 185 S--GGVIYLVTVTK 196
>gi|297527496|ref|YP_003669520.1| Proteasome endopeptidase complex [Staphylothermus hellenicus DSM
12710]
gi|297256412|gb|ADI32621.1| Proteasome endopeptidase complex [Staphylothermus hellenicus DSM
12710]
Length = 215
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 88/199 (44%), Gaps = 6/199 (3%)
Query: 7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMT 66
G ++ + N I + L + +++ KVH ++ H+ + GL D +
Sbjct: 20 GTVLGIKANNGIVIAGEKRLTYDGYVLSKNTRKVHPITKHVGIGFAGLVGDAQFIIRALR 79
Query: 67 LRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSG-EVFLSTLDM 125
L NY + I A I S LY+ +PL + I+ G Y D G ++++ LD
Sbjct: 80 LEAENYKLQLEREIRVRGLAKILSLLLYS-YKLAPL-MTEIVVGGYDDKGPQIYV--LDP 135
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
G + +VA GS + +GI E ++ + ++ ++ + +A ERD SG G
Sbjct: 136 VGSLI-EDKYVALGSGGPIALGIIEKEYREDIDIDEAEKLAVSAIREAIERDAVSGDGVD 194
Query: 186 VYVVEPDKVTIRKIATRMD 204
V + + ++R+ R +
Sbjct: 195 VLRITEEGYSLREYMFRRE 213
>gi|332796202|ref|YP_004457702.1| Proteasome endopeptidase complex [Acidianus hospitalis W1]
gi|332693937|gb|AEE93404.1| Proteasome endopeptidase complex [Acidianus hospitalis W1]
Length = 209
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 84/185 (45%), Gaps = 13/185 (7%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G V + K+ + D +G F + K+ ++ ++ + G AD +QF +
Sbjct: 11 GTTTVGILAKDGVVLAADRRASEGFFVANKMVRKILYITDNIGITTAGSVAD-LQFLYYV 69
Query: 66 --TLRTANYVASEQSPISPDTFAAIASW--ELYARKLTSPLFINPIIAGFYPDSGEVFLS 121
L NY++ + P T A+A++ ++ P + +I G+ + L
Sbjct: 70 LKNLYHYNYISGNR----PTTVKALATYLANTLSQNKYFPYLVQILIGGY---DTQPRLY 122
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
LD G T + +VA GS + MG+ E ++ L+ +Q ++ ++ V+ A +RD+ +G
Sbjct: 123 NLDYFGDMTEE-KYVATGSGSPVAMGVLEDEYREDLTADQAMDIAARAVLSAIKRDSYTG 181
Query: 182 WGATV 186
G V
Sbjct: 182 TGVIV 186
>gi|268554105|ref|XP_002635040.1| C. briggsae CBR-PBS-1 protein [Caenorhabditis briggsae]
Length = 242
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 81/189 (42%), Gaps = 6/189 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G ++AM +G D G F + NK+ ++ ++ + G AD A
Sbjct: 23 ISTGTTLIAMEYNGGVVVGTDSRTSAGSFITSRATNKITPITDNMVVCRSGSAADTQAIA 82
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPD-SGEVFLS 121
+ Y +E P++ + I LY + L + ++AG+ + G+V+
Sbjct: 83 DIAKYHIDVYTMTENKPVTIYRSSQIFRQFLYNYR--EQLSASVLVAGWDSELGGQVY-- 138
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
+ + G +R+ A GS + G +S W+P L+ E+ + Q V A RD SG
Sbjct: 139 AIPIGGFVSRQRS-TASGSGSTFVQGFLDSQWRPDLTLEECKAIVKQAVGLATFRDGSSG 197
Query: 182 WGATVYVVE 190
+ V++
Sbjct: 198 GVVRLAVID 206
>gi|448339242|ref|ZP_21528272.1| proteasome endopeptidase complex, beta subunit [Natrinema pallidum
DSM 3751]
gi|445620748|gb|ELY74237.1| proteasome endopeptidase complex, beta subunit [Natrinema pallidum
DSM 3751]
Length = 243
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 71/170 (41%), Gaps = 8/170 (4%)
Query: 29 GDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAI 88
G F + KV Q+ P L G F + Y A +S D A +
Sbjct: 72 GRFVSNKNVQKVEQIHPTAALTLVGSVGGAQSFISTLRAEVNLYEARRGERMSIDALATL 131
Query: 89 ASWELYARKLTSPLF-INPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMG 147
A +AR P F I+PI+ G + V+ ++D AG + D+ GS + G
Sbjct: 132 AGN--FARG--GPFFAIHPILGGVDDEGSHVY--SIDPAGG-VMEDDYTVTGSGMQLAYG 184
Query: 148 IGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIR 197
E ++P +S E+ V ++ + A ERDT SG G + + + V I
Sbjct: 185 HLEQAYEPDMSNEEAKTVAARGIKSAVERDTGSGNGVFLAEITDEGVDIH 234
>gi|119177181|ref|XP_001240403.1| proteasome component precursor [Coccidioides immitis RS]
gi|303316125|ref|XP_003068067.1| proteasome component, putative [Coccidioides posadasii C735 delta
SOWgp]
gi|240107743|gb|EER25922.1| proteasome component, putative [Coccidioides posadasii C735 delta
SOWgp]
gi|320032435|gb|EFW14388.1| proteasome component [Coccidioides posadasii str. Silveira]
gi|392867634|gb|EAS29116.2| proteasome component PRE3 [Coccidioides immitis RS]
Length = 231
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 81/198 (40%), Gaps = 7/198 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
+N G +I+A+ K+ +G D G + +K+ Q+ ++ G AD A
Sbjct: 27 VNLGTSIMAINFKDGVILGADSRTTTGAYIANRVTDKLTQVHDTIWCCRSGSAADTQAVA 86
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGF-YPDSGEVFLS 121
+ + Y P + T AA+ Y K L IIAG+ + G+V+
Sbjct: 87 DIVRYHLGMYGVVYDQPPTTQTAAALFQELCYDNK--DMLSAGIIIAGYDHRHGGQVYSI 144
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
L G K + GGS I G ++ W+ G++ E+ E + +A + D SG
Sbjct: 145 PL---GGSLHKQAYAIGGSGSTYIYGYCDAHWREGMTEEEGIEFVKGALHEAIKWDGSSG 201
Query: 182 WGATVYVVEPDKVTIRKI 199
G VV K +R +
Sbjct: 202 -GVIRLVVLTAKGAVRHL 218
>gi|301757125|ref|XP_002914391.1| PREDICTED: proteasome subunit beta type-8-like [Ailuropoda
melanoleuca]
gi|281338481|gb|EFB14065.1| hypothetical protein PANDA_002294 [Ailuropoda melanoleuca]
Length = 276
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 82/193 (42%), Gaps = 6/193 (3%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQ 60
+ +N G +A + + VD G + NKV +++P+L G CA Q
Sbjct: 67 IEMNHGTTTLAFKFQQGVIVAVDSRATAGSYISTSRINKVIEINPYLLGTMSG-CAADCQ 125
Query: 61 FAEKMTLRTAN-YVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
+ E++ + Y IS + + S ++ + L + +I G+ D
Sbjct: 126 YWERLLAKECRLYYLRNGERISVSAASKLLSNMVFQYR-GMDLSMGSMICGW--DKKGPG 182
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
L +D G D + GS G+ +S ++P LSPE+ +E+ + ++ A RD+
Sbjct: 183 LYYVDADGTRL-SGDMFSTGSGNTYAYGVMDSGYRPDLSPEEAYELGRRAIVYATHRDSY 241
Query: 180 SGWGATVYVVEPD 192
SG +Y V D
Sbjct: 242 SGGVVNMYHVMED 254
>gi|448345261|ref|ZP_21534158.1| proteasome endopeptidase complex, beta subunit [Natrinema altunense
JCM 12890]
gi|445635259|gb|ELY88429.1| proteasome endopeptidase complex, beta subunit [Natrinema altunense
JCM 12890]
Length = 243
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 71/170 (41%), Gaps = 8/170 (4%)
Query: 29 GDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAI 88
G F + KV Q+ P L G F + Y A +S D A +
Sbjct: 72 GRFVSNKNVQKVEQIHPTAALTLVGSVGGAQSFISTLRAEVNLYEARRGEGMSIDALATL 131
Query: 89 ASWELYARKLTSPLF-INPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMG 147
A +AR P F I+PI+ G + V+ ++D AG + D+ GS + G
Sbjct: 132 AGN--FARG--GPFFAIHPILGGVDDEGSHVY--SIDPAGG-VMEDDYTVTGSGMQLAYG 184
Query: 148 IGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIR 197
E ++P +S E+ V ++ + A ERDT SG G + + + V I
Sbjct: 185 HLEQAYEPDMSNEEAKTVAARGIKSAVERDTGSGNGVFLAEITDEGVDIH 234
>gi|294955484|ref|XP_002788528.1| proteasome subunit beta type, putative [Perkinsus marinus ATCC
50983]
gi|239904069|gb|EER20324.1| proteasome subunit beta type, putative [Perkinsus marinus ATCC
50983]
Length = 241
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/216 (19%), Positives = 91/216 (42%), Gaps = 22/216 (10%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
+++GG +A+ G + + D+ + +G +K+ +++ + G+ AD +
Sbjct: 34 MDNGGTCIAVPGADYCVVSTDNRVSKGYSIATRNGSKITKLTERCVITTSGMLADQITLH 93
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPD-SGEVF-- 119
+ + R A YV + + A + S LY ++ P + +IAG + G+V+
Sbjct: 94 KVLKNRVARYVHEHRREPTVGAVAQMLSNILYYKRFF-PYYTFNMIAGIDENGKGKVYGY 152
Query: 120 --LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFW---------QPGLSPEQLFEVCSQ 168
+ + + C A GS +++ I ++ L+ Q+ E+C
Sbjct: 153 DAIGSFESIPCG-------AQGSGSSLVQSILDNQLTKAHQQLASHEALTEGQMVELCKD 205
Query: 169 VVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
V+ A ERD +G T+ ++ + I+ R D
Sbjct: 206 VIASATERDIHTGDSNTICTIDSTGIKIQTFELRKD 241
>gi|260799786|ref|XP_002594865.1| hypothetical protein BRAFLDRAFT_124448 [Branchiostoma floridae]
gi|229280102|gb|EEN50876.1| hypothetical protein BRAFLDRAFT_124448 [Branchiostoma floridae]
Length = 235
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 90/216 (41%), Gaps = 26/216 (12%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINP-------GLCAD 57
+GG ++A+AG+ D+ ++ D ++EY + + + SP Y + G D
Sbjct: 30 NGGTVLAIAGE-------DYAVLACDARLSEYFSILSRDSPKRYKLTDMTVLGCCGFHGD 82
Query: 58 GMQFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGE 117
+ + + R NY +S + AA+ S LY R+ P + I+AG + G+
Sbjct: 83 VLTLTKMLDARLKNYKHEHNKTMSCKSIAAMLSTVLYYRRFF-PYYTYNILAGL-DEEGK 140
Query: 118 VFLSTLDMAGCETRKTDFVAGGSAQNMI---------MGIGESFWQPGLSPEQLFEVCSQ 168
+ + D G R+ + AGGSA ++ M + + + E+ +
Sbjct: 141 GCVYSFDPIGSYEREV-YRAGGSASALLQPLLDNQIGMKNMQGVQRLPVPKEKAVALVKD 199
Query: 169 VVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
V I A ERD +G + V+ D + R D
Sbjct: 200 VFISAAERDIYTGDQIIINVITKDGIQEESFPLRRD 235
>gi|17541700|ref|NP_500125.1| Protein PBS-1 [Caenorhabditis elegans]
gi|351064427|emb|CCD72799.1| Protein PBS-1 [Caenorhabditis elegans]
Length = 239
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 77/180 (42%), Gaps = 6/180 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G ++AM +G D G F + NK+ ++ ++ + G AD A
Sbjct: 20 ISTGTTLIAMEYNGGVVVGTDSRTSAGSFITSRATNKITPITDNMVVCRSGSAADTQAIA 79
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPD-SGEVFLS 121
+ Y +E P++ + I LY + L + ++AG+ + G+V+
Sbjct: 80 DIAKYHIDVYTMTENKPVTIYRSSQIFRQFLYNYR--EQLSASVLVAGWDEELGGQVY-- 135
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
+ + G +R+ A GS + G +S W+P L+ E+ + Q V A RD SG
Sbjct: 136 AIPIGGFVSRQRS-TASGSGSTFVQGFLDSQWRPNLTLEECKAIVKQAVGLATFRDGSSG 194
>gi|392870119|gb|EAS27280.2| proteasome component Pre1 [Coccidioides immitis RS]
Length = 205
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 80/192 (41%), Gaps = 10/192 (5%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
++ + GK+ I ++G + ++K +++ H + G D +QFAE +
Sbjct: 4 LLGITGKDFTLIAASKAAMRGPTILKSTDDKTRKLNKHTLIAYSGEAGDTVQFAEYIQAN 63
Query: 69 TANYVASEQSPISPDTFAAIASWELYARKL--TSPLFINPIIAGFYPDSGEVFLSTLDMA 126
Y ++ +SP A EL AR L SP +N ++ G P + + L LD
Sbjct: 64 AQLYSMRNETELSPSAVANFVRGEL-ARSLRSRSPYTVNLLLGGVDPITQKPSLYWLDYL 122
Query: 127 GCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQ---LFEVCSQVVIQACERDTKSGWG 183
+ + A G AQ + I + P +S E+ L E C+ + + D K G
Sbjct: 123 AS-LAQVPYAAHGYAQYYCLSILDKHHHPDISYEEGLKLLEKCTDELKRRLPIDFK---G 178
Query: 184 ATVYVVEPDKVT 195
V VV D +
Sbjct: 179 VFVKVVTKDGIN 190
>gi|307107838|gb|EFN56080.1| hypothetical protein CHLNCDRAFT_22624 [Chlorella variabilis]
Length = 239
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/214 (19%), Positives = 87/214 (40%), Gaps = 16/214 (7%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG +VA+AG + + + G + ++K+ Q++P + + G+ AD +
Sbjct: 29 DNGGTVVAVAGDDYCVVAASTRMSTGYSILTRNKSKILQLNPKCVIASAGMQADQETLHK 88
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y + + P++ A + S LY ++ P + + AG D G + T
Sbjct: 89 VLHSRHVTYQFNHRKPMACPAMAQLLSNTLYYKRFF-PYYTFNLCAGL-DDEGRGAVYTY 146
Query: 124 DMAGCETRKTDFVAGGSAQNMI-------------MGIGESFWQPGLSPEQLFEVCSQVV 170
D G R + G+ + ++ + + W L EQ ++
Sbjct: 147 DAIGSYER-VGYGCQGNGKELVQPVLDNQLKAASPLALPPQQWLSSLPLEQAVDLVKGAF 205
Query: 171 IQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
+ A ERD +G + ++ D + ++ + D
Sbjct: 206 VSAGERDIYTGDDVEILIITKDCIKTDRLELKRD 239
>gi|448391971|ref|ZP_21567066.1| proteasome endopeptidase complex subunit beta [Haloterrigena salina
JCM 13891]
gi|445665383|gb|ELZ18061.1| proteasome endopeptidase complex subunit beta [Haloterrigena salina
JCM 13891]
Length = 267
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 69/160 (43%), Gaps = 8/160 (5%)
Query: 39 KVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKL 98
KV Q+ P L G F + Y + P+ + A +A +AR
Sbjct: 106 KVEQIHPTGALTLVGSVGGAQSFIRTLRSEVNLYESRRGEPMPIEALATLAGN--FARG- 162
Query: 99 TSPLF-INPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGL 157
P INPI+ G + V+ ++D AG + D+ GS + G+ E ++ GL
Sbjct: 163 -GPFRAINPILGGVDAEGNHVY--SIDPAGG-VMEDDYTVTGSGMQLAYGLLEQEYEEGL 218
Query: 158 SPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIR 197
S E+ V ++ + A ERDT SG G + V + V I+
Sbjct: 219 SLEEAQSVAARAIESAVERDTGSGNGVFLAAVTDEGVDIQ 258
>gi|345564620|gb|EGX47580.1| hypothetical protein AOL_s00083g88 [Arthrobotrys oligospora ATCC
24927]
Length = 277
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 78/196 (39%), Gaps = 15/196 (7%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
L DGG ++A D G + K+H +SP ++ G AD +F
Sbjct: 36 LYDGGVVIA----------ADTRATSGPIVADKNCEKLHYISPQIWCAGAGTAAD-TEFT 84
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLST 122
+T + S + P + + + K + ++AG P ++ T
Sbjct: 85 TAITSSNLE-LHSLSTGRKPRVVTCMTMLKQHLFKYQGHIGAYLVVAGCDPTGSHLY--T 141
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGW 182
+ G T + +V GS M + E+ WQ GL E ++CS+ ++ D SG
Sbjct: 142 VHAHG-STDRLPYVTMGSGSLAAMSVFETTWQKGLDREGAVKLCSEAILAGIFNDLGSGS 200
Query: 183 GATVYVVEPDKVTIRK 198
V V+ P+K T+ +
Sbjct: 201 NVDVCVITPEKATLMR 216
>gi|74204932|dbj|BAE20959.1| unnamed protein product [Mus musculus]
Length = 245
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 79/180 (43%), Gaps = 6/180 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ +G D G + +K+ + H++ G AD A
Sbjct: 30 VSTGTTIMAVQFNGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVA 89
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSGEVFLS 121
+ +T + + P P A + ++ + L IIAG+ P + G+V+
Sbjct: 90 DAVTYQLGFHSIELNEP--PLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVY-- 145
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
++ M G R++ F GGS + I G ++ ++ G++ ++ + + + A ERD SG
Sbjct: 146 SVPMGGMMVRQS-FAIGGSGSSYIYGYVDATYREGMTKDECLQFTANALALAMERDGSSG 204
>gi|323450099|gb|EGB05982.1| hypothetical protein AURANDRAFT_54387 [Aureococcus anophagefferens]
Length = 256
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 79/183 (43%), Gaps = 6/183 (3%)
Query: 2 SLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQF 61
++ G A V + G C +GV+ V A KV ++ + L GL AD
Sbjct: 27 AVKKGAATVGVTGATCVVLGVERKAV-AKLQEARTIRKVVKLDEKITLAFAGLTADARVL 85
Query: 62 AEKMTLRTANY-VASEQSPISP--DTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEV 118
+K + +Y + E +P F A R P ++ I+AGF SG+
Sbjct: 86 VQKARVEAQSYRLTCEDAPSVEYMARFLARTQQRYTQRGGVRPFGVSSILAGFDSASGKP 145
Query: 119 FLSTLDMAGCE-TRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERD 177
+ +D +G + K + + G ++++M + E W GL ++ E+C + +++ +
Sbjct: 146 LMYQIDPSGTYFSWKANAIGGRNSKSMREYL-EKEWSAGLQDDEATELCVKTLLEVVDSG 204
Query: 178 TKS 180
K+
Sbjct: 205 AKN 207
>gi|238231384|ref|NP_032972.3| proteasome subunit beta type-6 precursor [Mus musculus]
gi|84028244|sp|Q60692.3|PSB6_MOUSE RecName: Full=Proteasome subunit beta type-6; AltName: Full=Low
molecular mass protein 19; AltName: Full=Macropain delta
chain; AltName: Full=Multicatalytic endopeptidase
complex delta chain; AltName: Full=Proteasome delta
chain; AltName: Full=Proteasome subunit Y; Flags:
Precursor
gi|26347247|dbj|BAC37272.1| unnamed protein product [Mus musculus]
gi|74189010|dbj|BAE39271.1| unnamed protein product [Mus musculus]
gi|74191020|dbj|BAE39351.1| unnamed protein product [Mus musculus]
gi|148680630|gb|EDL12577.1| mCG21162, isoform CRA_b [Mus musculus]
gi|745475|prf||2016287A housekeeping proteasome:SUBUNIT=2
Length = 238
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 79/180 (43%), Gaps = 6/180 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ +G D G + +K+ + H++ G AD A
Sbjct: 30 VSTGTTIMAVQFNGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVA 89
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSGEVFLS 121
+ +T + + P P A + ++ + L IIAG+ P + G+V+
Sbjct: 90 DAVTYQLGFHSIELNEP--PLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVY-- 145
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
++ M G R++ F GGS + I G ++ ++ G++ ++ + + + A ERD SG
Sbjct: 146 SVPMGGMMVRQS-FAIGGSGSSYIYGYVDATYREGMTKDECLQFTANALALAMERDGSSG 204
>gi|325184015|emb|CCA18472.1| proteasome subunit beta putative [Albugo laibachii Nc14]
Length = 247
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 78/184 (42%), Gaps = 9/184 (4%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG +A+AG + I D L G ++ E K+ Q++ L +PG D +Q
Sbjct: 43 NGGTALAIAGPDYVVIAGDSRLSTGYSILSRNEKKLQQLTSTSVLASPGSHNDVIQLRGM 102
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ L+ Y+ Q+ IS + + + LY+R+ P + ++AG D G+ + + D
Sbjct: 103 LQLQIQMYMHDNQAIISTENLSQVLMNTLYSRRFF-PYYAFCVLAGIDKD-GKGAVYSYD 160
Query: 125 MAGCETRKTDFVAGGSAQ-------NMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERD 177
G R + G N++ + + + ++ E+ I A ERD
Sbjct: 161 AIGSYDRVSRGAVGSGGHLMIPLLDNLVEHYSRTDPKREFTQQETKEIIKDAFITAGERD 220
Query: 178 TKSG 181
+G
Sbjct: 221 IYTG 224
>gi|440300730|gb|ELP93177.1| proteasome subunit alpha type-7, putative [Entamoeba invadens IP1]
Length = 246
Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 82/202 (40%), Gaps = 26/202 (12%)
Query: 2 SLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN-----KVHQMSPHLYLINPGLCA 56
+++ G V + GK+C G++ +IA+ ++ K+ Q+ H+Y GL A
Sbjct: 26 AVSKGLVSVGVKGKDCIIFGIEKK------SIAKLQDPRTVRKIQQIDQHIYTTFAGLTA 79
Query: 57 DGMQFAEKMTLRTANYVAS-EQSPISPDTFAAIASWELYARKLTS-----PLFINPIIAG 110
D K L NY S E +P A+A+ Y +K T P I+ +I G
Sbjct: 80 DARVLINKARLEAQNYRMSMEDAPTVEYVTKAVAN---YQQKYTQQGGSRPFGISTLIGG 136
Query: 111 FYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVV 170
F PD G L D AG T V G +A+ + + + G E VV
Sbjct: 137 FDPD-GTPRLYQTDPAGTWTEWKAHVVGRNAKTV-----DEYLVKGFEDNMDIEKALVVV 190
Query: 171 IQACERDTKSGWGATVYVVEPD 192
++A +S + V PD
Sbjct: 191 VRALLEVVESKNNIDIAVFTPD 212
>gi|284165546|ref|YP_003403825.1| proteasome endopeptidase complex subunit beta [Haloterrigena
turkmenica DSM 5511]
gi|302595714|sp|D2RUI0.1|PSB2_HALTV RecName: Full=Proteasome subunit beta 2; AltName: Full=20S
proteasome beta subunit 2; AltName: Full=Proteasome core
protein PsmB 2; Flags: Precursor
gi|284015201|gb|ADB61152.1| proteasome endopeptidase complex, beta subunit [Haloterrigena
turkmenica DSM 5511]
Length = 237
Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 71/170 (41%), Gaps = 8/170 (4%)
Query: 29 GDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAI 88
G F + KV Q+ P L G F + Y + P+ + A +
Sbjct: 66 GRFVSNKNVQKVEQIHPTGALTLVGSVGGAQSFIRTLRAEVNLYESRRGEPMPIEALATL 125
Query: 89 ASWELYARKLTSPLF-INPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMG 147
A +AR P INPI+ G + V+ ++D AG D+ GS + G
Sbjct: 126 AGN--FARG--GPFRAINPILGGVDEEGSHVY--SIDPAGG-VMADDYTVTGSGMQLAYG 178
Query: 148 IGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIR 197
+ E ++ GLS E+ V ++ + A ERDT SG G + V + V I+
Sbjct: 179 LLEQEYEEGLSLEEAQSVAARAIESAVERDTGSGNGVFLAAVTGEGVDIQ 228
>gi|294942317|ref|XP_002783482.1| proteasome subunit beta type, putative [Perkinsus marinus ATCC
50983]
gi|239895942|gb|EER15278.1| proteasome subunit beta type, putative [Perkinsus marinus ATCC
50983]
Length = 242
Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 44/216 (20%), Positives = 91/216 (42%), Gaps = 22/216 (10%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
+++GG +A+ G + + D+ + +G +K+ +++ + G+ AD +
Sbjct: 35 VDNGGTCIAVPGADYCVVSTDNRVSKGYSIATRNGSKITKLTERCVITTSGMLADQITLH 94
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPD-SGEVF-- 119
+ + R A YV + + A + S LY ++ P + +IAG + G+V+
Sbjct: 95 KVLKNRVARYVHEHRREPTIGAVAQMLSNILYYKRFF-PYYTFNMIAGIDENGQGKVYGY 153
Query: 120 --LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFW---------QPGLSPEQLFEVCSQ 168
+ + + C A GS +++ I ++ L+ Q+ E+C
Sbjct: 154 DAIGSFESIPCG-------AQGSGSSLVQSILDNQLTKAHQQLASHEALTEGQMVELCKD 206
Query: 169 VVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
V+ A ERD +G TV ++ + I+ R D
Sbjct: 207 VIASATERDIHTGDSNTVCTIDTTGIKIQTFELRKD 242
>gi|90077008|dbj|BAE88184.1| unnamed protein product [Macaca fascicularis]
Length = 202
Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 72/163 (44%), Gaps = 6/163 (3%)
Query: 20 IGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSP 79
+G D G + +K+ + H++ G AD A+ +T + + P
Sbjct: 11 LGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVADAVTYQLGFHSIELNEP 70
Query: 80 ISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSGEVFLSTLDMAGCETRKTDFVAG 138
P A + ++ + L IIAG+ P + G+V+ ++ M G R++ F G
Sbjct: 71 --PLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVY--SVPMGGTMVRQS-FAIG 125
Query: 139 GSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
GS + I G ++ ++ G++ E+ + + + A ERD SG
Sbjct: 126 GSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSG 168
>gi|443897309|dbj|GAC74650.1| permease of the drug/metabolite transporter [Pseudozyma antarctica
T-34]
Length = 222
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 73/186 (39%), Gaps = 8/186 (4%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G +I+A+A +G D G + +K+ +S +Y G AD A+ +
Sbjct: 20 GTSIMAVAYDKGVILGADSRTTMGSYIANRVTDKLTHLSDRIYCCRSGSAADTQAIADIV 79
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGF-YPDSGEVFLSTLD 124
T Y +P+ A + +Y K L I+AG+ + G VF L
Sbjct: 80 TYYLDMYAVQSGNPVETKVAANLFQEIVYGNK--DRLSAGIIVAGWDKQNGGSVFNIPL- 136
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G + + GGS I G ++ W+ G E+ E + A RD S G
Sbjct: 137 --GGGVFQQPWAIGGSGSTYIYGYCDATWKAGWGKEKTLEFVKNALALAMRRDGSS--GG 192
Query: 185 TVYVVE 190
T+ +V+
Sbjct: 193 TIRLVD 198
>gi|399574328|ref|ZP_10768087.1| proteasome endopeptidase complex subunit beta [Halogranum salarium
B-1]
gi|399240160|gb|EJN61085.1| proteasome endopeptidase complex subunit beta [Halogranum salarium
B-1]
Length = 228
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 64/168 (38%), Gaps = 9/168 (5%)
Query: 29 GDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAI 88
G FT + KV Q+ P + G + + + Y P+S +
Sbjct: 60 GRFTANKNAQKVEQVHPTGAIAISGSVGPAQRLIQSLRTEANLYGVRRGEPMS------L 113
Query: 89 ASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGI 148
+ L S L + P++AG +V+ LD G R D+ AGGS + G+
Sbjct: 114 RALSQTTGHLVSGLPVAPLLAGVDQTGPQVY--ELDGGGSVLRD-DYAAGGSGMQVAYGV 170
Query: 149 GESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTI 196
E + P S E + A ERDT SG G V + + V I
Sbjct: 171 LERRFDPDASTESARRTAVDAIAAASERDTASGNGVHVATITAEGVDI 218
>gi|340344597|ref|ZP_08667729.1| Proteasome endopeptidase complex [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339519738|gb|EGP93461.1| Proteasome endopeptidase complex [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 197
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 76/168 (45%), Gaps = 13/168 (7%)
Query: 29 GDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQ----SPISPDT 84
G+F +++ K ++ + GL AD MQ +TL+ A + + P+T
Sbjct: 30 GNFLVSKSSKKTFSITSKVGAACAGLVAD-MQI---LTLQIAALAKIRKMELKRDVPPNT 85
Query: 85 FAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNM 144
A + S +Y R+ PL I+ G + L TLD G ++ A G+ M
Sbjct: 86 VAKMMSNMMYERRYF-PLLTQVIVGGVV---DKPILYTLDPLGS-VLPDEYAAVGTGAEM 140
Query: 145 IMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPD 192
+G+ + ++P ++ E+ ++ + V A RD+ SG G + VV D
Sbjct: 141 ALGVLDPQFKPNMTQEEAIDLAKRAVRSAALRDSASGDGLDILVVTKD 188
>gi|387594237|gb|EIJ89261.1| hypothetical protein NEQG_00031 [Nematocida parisii ERTm3]
gi|387594984|gb|EIJ92611.1| hypothetical protein NEPG_02499 [Nematocida parisii ERTm1]
Length = 230
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 77/180 (42%), Gaps = 12/180 (6%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE-- 63
G I+A+ K+ +G D G + K+ ++ ++Y G AD A+
Sbjct: 34 GTTIIAVKYKDGVILGADSRTSMGTYVSNRVTRKITKLIDNVYTCRCGSAADTQAIADYA 93
Query: 64 KMTLRTANYVASEQSPISPDTFAAIAS--WELYARKLTSPLFINPIIAGFYPDSGEVFLS 121
K + T Y Q P+ D AI W+ + +T+ I+AG G VF
Sbjct: 94 KRIMNTGIYCHG-QKPLVKDVAVAIKKIVWDATDQGVTAGF----IVAGVDETGGHVF-- 146
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
T+ + G + +AG S I G+G+S ++ ++ E+ E ++V A RD SG
Sbjct: 147 TIPLGGALIEQNWSIAG-SGSAYISGLGDSTFKEEMTKEEAVEFVKKMVSHAMYRDNSSG 205
>gi|293357141|ref|XP_002729074.1| PREDICTED: proteasome subunit beta type-6 [Rattus norvegicus]
gi|392338679|ref|XP_003753602.1| PREDICTED: proteasome subunit beta type-6 [Rattus norvegicus]
gi|47169486|tpe|CAE48380.1| TPA: proteasome subunit beta type 6-like [Rattus norvegicus]
gi|149048484|gb|EDM01025.1| rCG63409 [Rattus norvegicus]
Length = 238
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 79/180 (43%), Gaps = 6/180 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ +G D G + +K+ + H++ G AD A
Sbjct: 30 VSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVA 89
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSGEVFLS 121
+ +T + + P P A + ++ + L IIAG+ P + G+V+
Sbjct: 90 DAVTYQLGFHSIELNEP--PLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVY-- 145
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
++ M G R++ F GGS + I G ++ ++ G++ ++ + + + A ERD SG
Sbjct: 146 SVPMGGMMVRQS-FAIGGSGSSYIYGYVDATYREGMTKDECLQFTANALALAMERDGSSG 204
>gi|54019419|ref|NP_476440.2| proteasome subunit beta type-6 [Rattus norvegicus]
gi|84028245|sp|P28073.3|PSB6_RAT RecName: Full=Proteasome subunit beta type-6; AltName:
Full=Macropain delta chain; AltName: Full=Multicatalytic
endopeptidase complex delta chain; AltName:
Full=Proteasome chain 5; AltName: Full=Proteasome delta
chain; AltName: Full=Proteasome subunit Y; Flags:
Precursor
gi|37231619|gb|AAH58451.1| Proteasome (prosome, macropain) subunit, beta type 6 [Rattus
norvegicus]
gi|149053199|gb|EDM05016.1| rCG33991, isoform CRA_a [Rattus norvegicus]
Length = 238
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 79/180 (43%), Gaps = 6/180 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ +G D G + +K+ + H++ G AD A
Sbjct: 30 VSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVA 89
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSGEVFLS 121
+ +T + + P P A + ++ + L IIAG+ P + G+V+
Sbjct: 90 DAVTYQLGFHSIELNEP--PLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVY-- 145
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
++ M G R++ F GGS + I G ++ ++ G++ ++ + + + A ERD SG
Sbjct: 146 SVPMGGMMVRQS-FAIGGSGSSYIYGYVDATYREGMTKDECLQFTANALALAMERDGSSG 204
>gi|401626068|gb|EJS44033.1| pre1p [Saccharomyces arboricola H-6]
Length = 198
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 83/191 (43%), Gaps = 10/191 (5%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
I+ + ++ + + +G + + ++K Q+SPH + G D QFAE +
Sbjct: 4 ILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTTQFAEYIQAN 63
Query: 69 TANYVASEQSPISPDTFAAIASWELYARKLTS--PLFINPIIAGFYPDSGEVFLSTLDMA 126
Y E +SP ++ EL A+ + S P +N +I G+ + L +D
Sbjct: 64 IQLYSIREDYELSPQAVSSFVRQEL-AKSIRSRKPYQVNVLIGGYDKRKDKPELYQIDYL 122
Query: 127 GCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQ---LFEVCSQVVIQACERDTKSGWG 183
G + + + A G + I + ++P ++ E+ L ++C Q + + D K G
Sbjct: 123 GTQV-ELPYGAHGYSGFYTFSILDRHYRPDMTTEEGLSLLKICVQELERRMPMDFK---G 178
Query: 184 ATVYVVEPDKV 194
V +V+ D +
Sbjct: 179 VIVKIVDKDGI 189
>gi|336372669|gb|EGO01008.1| hypothetical protein SERLA73DRAFT_179029 [Serpula lacrymans var.
lacrymans S7.3]
gi|336385526|gb|EGO26673.1| hypothetical protein SERLADRAFT_463954 [Serpula lacrymans var.
lacrymans S7.9]
Length = 194
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 77/191 (40%), Gaps = 14/191 (7%)
Query: 11 AMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTA 70
A+ GK + D + + E+K+ ++SPHL + G D +QFAE +
Sbjct: 6 ALTGKGYVIVAADTTAARSIVKMKVDEDKIKEISPHLLMAYSGEPGDTVQFAEFVERNIR 65
Query: 71 NYVASEQSPISPDTFAAIASW-------ELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
Y P+ P +A ASW L +R SP +N ++ G+ + E L +
Sbjct: 66 LYQIRNLYPLRP---SAAASWIRRSLADSLRSR---SPYSVNLLVGGYDTATHEPKLYWI 119
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWG 183
D G + F A G + + + + P S E+ + V + +R S
Sbjct: 120 DYLGTQV-DVPFGAHGYGSYFALSLLDRYHDPEASLEEGLATLKRCVDEVAKRLVVSPGR 178
Query: 184 ATVYVVEPDKV 194
V VV+ D V
Sbjct: 179 YKVKVVDKDGV 189
>gi|374628281|ref|ZP_09700666.1| proteasome endopeptidase complex, beta subunit [Methanoplanus
limicola DSM 2279]
gi|373906394|gb|EHQ34498.1| proteasome endopeptidase complex, beta subunit [Methanoplanus
limicola DSM 2279]
Length = 206
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/191 (20%), Positives = 82/191 (42%), Gaps = 13/191 (6%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
L DGG ++A + G+ ++ KV+Q++ + + G D Q A
Sbjct: 18 LFDGGVVLA----------TERRATMGNMIASKKAKKVYQIADRIGMTIAGGVGDAQQLA 67
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLST 122
M + + + PI+ A + S L ++ P ++ ++ G ++ +
Sbjct: 68 RLMQVECSLFNIRRGRPIAVGAAATLLSNVLNQNRMF-PYYVQLLVGGIDRYGPSIY--S 124
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGW 182
+D G + + VA GS G+ E ++ G+S ++ ++ + + A +RD+ SG
Sbjct: 125 VDALGGASPEDRIVATGSGSPFAYGVLEDRFEEGMSEKECLDLAIRALRSAMKRDSASGE 184
Query: 183 GATVYVVEPDK 193
++ V+ DK
Sbjct: 185 DISIVVITKDK 195
>gi|302774737|ref|XP_002970785.1| hypothetical protein SELMODRAFT_94273 [Selaginella moellendorffii]
gi|302818938|ref|XP_002991141.1| hypothetical protein SELMODRAFT_132999 [Selaginella moellendorffii]
gi|300141072|gb|EFJ07787.1| hypothetical protein SELMODRAFT_132999 [Selaginella moellendorffii]
gi|300161496|gb|EFJ28111.1| hypothetical protein SELMODRAFT_94273 [Selaginella moellendorffii]
Length = 226
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 84/214 (39%), Gaps = 16/214 (7%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
N+GG VA+AG + + D L G + +K+ ++S + + G AD +
Sbjct: 16 NNGGTCVAIAGSDYCIVAADTRLSLGYSILTRGHSKLFKLSDTAVMASSGFQADVRTLQK 75
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y P+S A + S LY ++ P + ++ G G+ + T
Sbjct: 76 NLEARQKGYYHQHGKPMSCPAMAQLLSNTLYYKRFF-PYYSFNVLGGL-DTEGKGCVYTY 133
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGES--------FWQPG-----LSPEQLFEVCSQVV 170
D G R T + GS +IM I ++ + P L+ ++ E+
Sbjct: 134 DAVGSYER-TGYSTQGSGAELIMPILDNQLKSASPLLYPPRETATPLTEQEALEIVKDTF 192
Query: 171 IQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A ER +G G + V+ D + + + D
Sbjct: 193 ASATERQIYTGDGLEIVVINKDGIHKEYLDLKKD 226
>gi|255950050|ref|XP_002565792.1| Pc22g18890 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211592809|emb|CAP99177.1| Pc22g18890 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 203
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 79/191 (41%), Gaps = 10/191 (5%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
++ +AGK+ + ++G + ++K Q++ H + G D +QFAE +
Sbjct: 4 LLGIAGKDFVILAASKAAMRGPTVLKAEDDKTRQLNKHTVMAFSGESGDTVQFAEYIQAN 63
Query: 69 TANYVASEQSPISPDTFAAIASWELYARKL--TSPLFINPIIAGFYPDSGEVFLSTLDMA 126
A Y + +SP A EL AR L SP +N ++ G P + + L +D
Sbjct: 64 AALYSMRNDTELSPSAVANFVRGEL-ARSLRSRSPYTVNLLLGGIDPVTEKPHLYWVDYL 122
Query: 127 GCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQ---LFEVCSQVVIQACERDTKSGWG 183
+ A G AQ + I + P S E+ L +C+ + + D K G
Sbjct: 123 A-SLAPLPYAAHGYAQYYCLSILDKHHHPDCSLEEGLALLTLCTDELKRRLPIDYK---G 178
Query: 184 ATVYVVEPDKV 194
V VV D V
Sbjct: 179 MLVKVVTKDGV 189
>gi|350525853|ref|YP_002582771.2| proteasome subunit beta [Thermococcus sp. AM4]
gi|345650672|gb|EEB74119.2| Proteasome subunit beta [Thermococcus sp. AM4]
Length = 194
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 75/189 (39%), Gaps = 9/189 (4%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G V + ++ + D G+ ++ KV Q+ HL + GL D + +
Sbjct: 3 GTTTVGVVCRDGVVLAADRRATLGNMVTSKEVTKVFQVDDHLAIAGAGLVGDILSLVRLL 62
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGF--YPDSGEVFLSTL 123
Y A +S A + S L+ + P F +I G+ P L ++
Sbjct: 63 RAEAKLYRARVGREMSVKAMATLVSNVLHGSRYL-PYFAWFLIGGYDVRPR-----LYSI 116
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWG 183
D AG T + F+A GS + + E + G+ E+ ++ + V A RD +G G
Sbjct: 117 DAAGGVTEER-FIAAGSGMEFALALLEENFSDGMDLEEGVDLAVRAVKAAMRRDVYTGEG 175
Query: 184 ATVYVVEPD 192
TV + +
Sbjct: 176 VTVVTITKE 184
>gi|330914049|ref|XP_003296474.1| hypothetical protein PTT_06586 [Pyrenophora teres f. teres 0-1]
gi|311331358|gb|EFQ95438.1| hypothetical protein PTT_06586 [Pyrenophora teres f. teres 0-1]
Length = 227
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 75/180 (41%), Gaps = 6/180 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
+N G +I+A+ K+ + D G + +K+ Q+ ++ G AD A
Sbjct: 23 VNLGTSIMAINFKDGVILAADSRTTTGAYIANRVTDKLTQVHDTIWCCRSGSAADTQAVA 82
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGF-YPDSGEVFLS 121
+ + Y + P + T AAI Y+ K L IIAG+ + G+V+
Sbjct: 83 DIVHYHLGMYGTTNDEPPTTQTAAAIFQELCYSNK--DQLSAGLIIAGWDHRHGGQVYSI 140
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
L G K + GGS I G ++ W+ G+S E+ + + +A + D SG
Sbjct: 141 PL---GGSLHKQSYAIGGSGSTYIYGYCDANWREGMSEEEGIKFVKGALSEAIKWDGSSG 197
>gi|395836618|ref|XP_003791250.1| PREDICTED: proteasome subunit beta type-6 [Otolemur garnettii]
Length = 239
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 78/180 (43%), Gaps = 6/180 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ +G D G + +K+ + ++ G AD A
Sbjct: 31 VSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVA 90
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSGEVFLS 121
+ +T + + P P A + ++ + L IIAG+ P + G+V+
Sbjct: 91 DAVTYQLGFHSIELNEP--PLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVY-- 146
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
++ M G R++ F GGS + I G ++ ++ G++ E+ E + + A ERD SG
Sbjct: 147 SVPMGGMMVRQS-FAIGGSGSSYIYGYVDATYREGMTKEECLEFTANALALAMERDGSSG 205
>gi|300120426|emb|CBK19980.2| unnamed protein product [Blastocystis hominis]
Length = 322
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 84/207 (40%), Gaps = 16/207 (7%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG + A+AGK+ I D L QG ++ +++H ++ L N G D
Sbjct: 2 NGGTVAAIAGKDYVIIAADTRLTQGYEILSRNVSRLHPLTSVCVLGNAGCWTDMTTLLRT 61
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ Y + + IS AA+ S LY R+ P++ ++ G + V S
Sbjct: 62 LEYDIKEYKYNHREEISTSAVAALLSNTLYNRRFF-PIYAFNVLCGLDENGQGVIYSYDA 120
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPG--------LSPEQLFEVCSQVVIQACER 176
+ E K + GSAQ+ I+ I +S L E+ + +V ER
Sbjct: 121 IGSFELMK--YAVQGSAQSHIIPILDSCVAKKNRNEPYVDLDREEALNLMKEVFTAGTER 178
Query: 177 DTKSG-----WGATVYVVEPDKVTIRK 198
+ +G T + +E + + +RK
Sbjct: 179 EKDTGDQLEILTVTAHGIEREVMELRK 205
>gi|256075409|ref|XP_002574012.1| proteasome subunit beta 1 (T01 family) [Schistosoma mansoni]
gi|353229361|emb|CCD75532.1| proteasome subunit beta 1 (T01 family) [Schistosoma mansoni]
Length = 212
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 85/216 (39%), Gaps = 25/216 (11%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGL---CA---- 56
++GG ++ +AG + I D L GDF I + + SP L+ + PG CA
Sbjct: 7 SNGGTVMGIAGNDFSLIASDTRLCDGDFVI------LSRNSPRLFKLGPGNILGCAGFHG 60
Query: 57 DGMQFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSG 116
D + + + + + IS A + S LY R+ P +++ ++ G D G
Sbjct: 61 DVLTLTKLLENKVKTFRYDHGKNISTKALAGLLSVTLYNRRFF-PFYVSNVLVGL--DEG 117
Query: 117 EVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGES--------FWQPGLSPEQLFEVCSQ 168
L + D G + A GS+ ++ +S + L E ++
Sbjct: 118 RGVLYSYDPVG-SYESEGYRASGSSSAILQPFLDSTVGNKTSKYHVSRLDKETAVKLTHD 176
Query: 169 VVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
+ I A ERD + G + + D ++ R D
Sbjct: 177 IFISAAERDIQCGDSVIICTITKDGLSEVSYPLRRD 212
>gi|410979655|ref|XP_003996197.1| PREDICTED: proteasome subunit beta type-6 isoform 1 [Felis catus]
Length = 239
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 84/196 (42%), Gaps = 6/196 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ + +G D G + +K+ + ++ G AD A
Sbjct: 31 VSTGTTIMAVQFEGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVA 90
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSGEVFLS 121
+ +T + + P P A + ++ + L IIAG+ P + G+V+
Sbjct: 91 DAVTYQLGFHSIELNEP--PLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVY-- 146
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
++ M G R++ F GGS + I G ++ ++ G++ E+ + + + A ERD SG
Sbjct: 147 SVPMGGMMVRQS-FAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSG 205
Query: 182 WGATVYVVEPDKVTIR 197
+ +E V R
Sbjct: 206 GVIRLAAIEESGVERR 221
>gi|302810458|ref|XP_002986920.1| hypothetical protein SELMODRAFT_124882 [Selaginella moellendorffii]
gi|300145325|gb|EFJ12002.1| hypothetical protein SELMODRAFT_124882 [Selaginella moellendorffii]
Length = 226
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 84/214 (39%), Gaps = 16/214 (7%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
N+GG VA+AG + + D L G + +K+ ++S + + G AD +
Sbjct: 16 NNGGTCVAIAGSDYCIVAADTRLSLGYSILTRGHSKLFKLSDTAVMASSGFQADVRTLQK 75
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y P+S A + S LY ++ P + ++ G G+ + T
Sbjct: 76 NLEARQKGYYHQHGKPMSCPGMAQLLSNTLYYKRFF-PYYSFNVLGGL-DTEGKGCVYTY 133
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGES--------FWQPG-----LSPEQLFEVCSQVV 170
D G R T + GS +IM I ++ + P L+ ++ E+
Sbjct: 134 DAVGSYER-TGYSTQGSGAELIMPILDNQLKSASPLLYPPRETATPLTEQEALEIVKDTF 192
Query: 171 IQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A ER +G G + V+ D + + + D
Sbjct: 193 ASATERQIYTGDGLEIVVINKDGIHKEYLDLKKD 226
>gi|342182103|emb|CCC91582.1| proteasome beta 6 subunit [Trypanosoma congolense IL3000]
Length = 258
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 89/214 (41%), Gaps = 18/214 (8%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEY--ENKVHQMSPHLYLINPGLCADGMQF 61
++GG I A+AG++ +G D L GDF I +K+ Q++ ++L + G+ AD +Q
Sbjct: 50 DNGGTIAAIAGRDFAILGADTRL-NGDFCIHTRMDTSKLFQLTDRVFLASSGMQADRLQL 108
Query: 62 AEKMTLRTA--NYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
+ R Y ++P S A + S LY R+ P + +I G + G
Sbjct: 109 QRMLQYRIQWYRYNNGGKTP-STKAIAKLVSTVLYQRRFF-PYYTFNMIVGL-DEQGAGV 165
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQ---------PGLSPEQLFEVCSQVV 170
+ D G T + + GSA + + + + P LS E++ +
Sbjct: 166 CYSYDAVG-STEPSRYGTCGSASSFVEPLMDCLLTRQHMVTSVPPELSVEEVLGMMKDAF 224
Query: 171 IQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A ERD +G +V+ + + R D
Sbjct: 225 TGAAERDIFTGDSVCFHVITAEGIRTEMFELRKD 258
>gi|212536802|ref|XP_002148557.1| proteasome component Pre3, putative [Talaromyces marneffei ATCC
18224]
gi|210070956|gb|EEA25046.1| proteasome component Pre3, putative [Talaromyces marneffei ATCC
18224]
Length = 231
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 80/198 (40%), Gaps = 7/198 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
+N G +I+A+ K+ +G D G + +K+ Q+ ++ G AD A
Sbjct: 26 VNLGTSIMAINFKDGVILGADSRTTTGSYIANRVTDKLTQVHDTIWCCRSGSAADTQAVA 85
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGF-YPDSGEVFLS 121
+ ++ Y P S T AA+ Y K L IIAG+ G+V+
Sbjct: 86 DIVSYHLNMYGIVNDEPPSTQTAAALFQELCYDNK--DQLSAGIIIAGYDRRHGGQVYSI 143
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
L G K + GGS I G ++ W+ G++ E+ + +A + D SG
Sbjct: 144 PL---GGSLHKQAYAIGGSGSTYIYGYCDANWKEGMTEEEGVNFVKSALGEAIKWDGSSG 200
Query: 182 WGATVYVVEPDKVTIRKI 199
G VV K IR +
Sbjct: 201 -GVIRMVVLTAKGAIRHL 217
>gi|410084030|ref|XP_003959592.1| hypothetical protein KAFR_0K01010 [Kazachstania africana CBS 2517]
gi|372466184|emb|CCF60457.1| hypothetical protein KAFR_0K01010 [Kazachstania africana CBS 2517]
Length = 195
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 77/173 (44%), Gaps = 4/173 (2%)
Query: 26 LVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTF 85
+ +G + + ++K Q+SPH + G D +QFAE + Y E +SP+
Sbjct: 21 VTRGISILKDTDDKTRQLSPHNLMSFAGEAGDTVQFAEYIQANMQLYAIRENFELSPNAV 80
Query: 86 AAIASWELYARKLTS--PLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQN 143
++ EL A+ + S P +N +I G+ + + L +D G + + + A G +
Sbjct: 81 SSFVRNEL-AKSIRSRKPYQVNVLIGGYDIKNNKPELYQIDYLGTKV-ELPYAAHGYSGF 138
Query: 144 MIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTI 196
+ + ++P +S E ++ + + +R G V VV+ D + I
Sbjct: 139 YTFSLLDRHYRPDMSLEDGLKLLKLCIAELDKRMPVDFKGVIVKVVDKDGIRI 191
>gi|268323699|emb|CBH37287.1| 20S proteasome, beta subunit [uncultured archaeon]
Length = 210
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/165 (20%), Positives = 69/165 (41%), Gaps = 3/165 (1%)
Query: 29 GDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAI 88
G F ++ K++ + + + G+ D MT+ Y P++ + +
Sbjct: 33 GSFIASKTAKKIYLVDDRIAMTTAGIVGDAQALVRIMTVELQLYKIRRNEPMTVKGISTL 92
Query: 89 ASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGI 148
S + ++ P + +I G D ++ T+D G T +++ A GS + G+
Sbjct: 93 LSNVMNGQRY-YPYIVQLLIGGIDRDGAHLY--TIDPFGGNTEESEIAATGSGSPIAYGV 149
Query: 149 GESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDK 193
E+ + +S E+ + Q + A +RD+ SG V + D+
Sbjct: 150 LENKYTKDISLEKGTALAIQALYSAIKRDSASGEAIEVVTITKDR 194
>gi|300120472|emb|CBK20026.2| unnamed protein product [Blastocystis hominis]
Length = 322
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 84/207 (40%), Gaps = 16/207 (7%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG + A+AGK+ I D L QG ++ +++H ++ L N G D
Sbjct: 2 NGGTVAAIAGKDYVIIAADTRLTQGYEILSRNVSRLHPLTSVCVLGNAGCWTDMTTLLRT 61
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ Y + + IS AA+ S LY R+ P++ ++ G + V S
Sbjct: 62 LEYDIKEYKYNHREEISTSAVAALLSNTLYNRRFF-PIYAFNVLCGLDENGQGVIYSYDA 120
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPG--------LSPEQLFEVCSQVVIQACER 176
+ E K + GSAQ+ I+ I +S L E+ + +V ER
Sbjct: 121 IGSFELMK--YAVQGSAQSHIIPILDSCVAKKNRNEPYVDLDREEALNLMKEVFTAGTER 178
Query: 177 DTKSG-----WGATVYVVEPDKVTIRK 198
+ +G T + +E + + +RK
Sbjct: 179 EKDTGDQLEILTVTAHGIEREVMELRK 205
>gi|124088088|ref|XP_001346958.1| Proteasome subunit [Paramecium tetraurelia strain d4-2]
gi|145474683|ref|XP_001423364.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|50057347|emb|CAH03331.1| Proteasome subunit, putative [Paramecium tetraurelia]
gi|124390424|emb|CAK55966.1| unnamed protein product [Paramecium tetraurelia]
Length = 236
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 76/171 (44%), Gaps = 10/171 (5%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
GG+++A+ +G D L G + K+ Q+S + + G +D Q +++
Sbjct: 21 GGSVIALVYNGGVIVGTDTLCSYGSMAAFKNVKKIAQISKNTIYASSGEFSDFQQVVKEL 80
Query: 66 TL--RTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
R+A P D +A R +PL++ +IAGF+ +GE +LS +
Sbjct: 81 AKIDRSALQYDDGVHPSPKDYGNFLARLSYKKRCKINPLYLQNVIAGFH--NGERYLSLV 138
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQAC 174
D+ G +++F+ G A I ++W + +Q ++ VI+ C
Sbjct: 139 DIYGTYL-ESNFITTGFASYFCKAIISNYWNENCTLDQ-----AKQVIREC 183
>gi|212529024|ref|XP_002144669.1| proteasome component Pup1, putative [Talaromyces marneffei ATCC
18224]
gi|210074067|gb|EEA28154.1| proteasome component Pup1, putative [Talaromyces marneffei ATCC
18224]
Length = 277
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 75/190 (39%), Gaps = 5/190 (2%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G IV N I D G + K+H +SP ++ G AD +F +
Sbjct: 29 GTTIVGCIYDNGVVIAADTRATSGPIVADKNCEKLHFISPQIWCAGAGTAAD-TEFTTAL 87
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
+ + + S + +P + + + + + ++AG P +F T+
Sbjct: 88 -ISSNIELHSLSTGRAPRVATCMTMLKQHLFRYQGHIGAYLVVAGVDPTGTHLF--TVHA 144
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
G T K +V GS M + ES W+P L E +CS+ ++ D SG
Sbjct: 145 HG-STDKLPYVTMGSGSLAAMSVFESMWKPNLDKEGAIAICSEAILAGIFNDLGSGSNVD 203
Query: 186 VYVVEPDKVT 195
V V+E D+ T
Sbjct: 204 VCVIEKDQPT 213
>gi|315426587|dbj|BAJ48216.1| 20S proteasome beta subunit [Candidatus Caldiarchaeum subterraneum]
gi|343485345|dbj|BAJ50999.1| 20S proteasome beta subunit [Candidatus Caldiarchaeum subterraneum]
Length = 187
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 77/183 (42%), Gaps = 4/183 (2%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
IV + + + D +G F ++ K+ ++ L + GL +D + +
Sbjct: 4 IVGLKAVDGVVLASDRRASKGFFIASKTTQKIMKVDDSLAIAVAGLLSDAVYLVNVVRAE 63
Query: 69 TANYVASEQSPISPDTFAAIASWELYA-RKLTSPLFINPIIAGFYPDSGEVFLSTLDMAG 127
P+S + + S Y+ + P + I+AG + VF S DM+G
Sbjct: 64 RKLIALRRGYPLSVAESSKLISNLFYSGLRNYIPYYAELIVAGVDDEGPHVFSS--DMSG 121
Query: 128 CETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVY 187
+ +FV+ GS + G+ ES + PGL E+ + + V A +RD SG G V
Sbjct: 122 SMVAE-EFVSSGSGSPVAYGVLESLYTPGLKLEEARAIAVKAVEAAMQRDPGSGNGVDVL 180
Query: 188 VVE 190
++
Sbjct: 181 AIQ 183
>gi|380491934|emb|CCF34978.1| proteasome component PRE3 [Colletotrichum higginsianum]
Length = 228
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 75/182 (41%), Gaps = 10/182 (5%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
+N G +I+A+ K+ +G D G + +K+ Q+ ++ G AD A
Sbjct: 26 VNLGTSIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTQVHDTIWCCRSGSAADTQAVA 85
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARK--LTSPLFINPIIAGF-YPDSGEVF 119
+ + + Y P T AAI YA K LT+ L IIAG+ G+V+
Sbjct: 86 DIVQYQLGLYAMRNGKPPMTQTAAAIFQEVCYANKDRLTAGL----IIAGWDERHGGQVY 141
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
L G K + GGS I G + W+ G+ ++ E + +A + D
Sbjct: 142 SIPL---GGSLHKQSYAIGGSGSTYIYGYCDEHWKEGMEEKEAVEFVKGSLKEAIKWDGS 198
Query: 180 SG 181
SG
Sbjct: 199 SG 200
>gi|124028410|ref|YP_001013730.1| proteasome beta subunit [Hyperthermus butylicus DSM 5456]
gi|302595717|sp|A2BN24.1|PSB1_HYPBU RecName: Full=Proteasome subunit beta 1; AltName: Full=20S
proteasome beta subunit 1; AltName: Full=Proteasome core
protein PsmB 1; Flags: Precursor
gi|123979104|gb|ABM81385.1| proteasome beta subunit [Hyperthermus butylicus DSM 5456]
Length = 204
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 82/192 (42%), Gaps = 3/192 (1%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G V + G + + + G F I++ KV++++ +L L GL AD ++ +
Sbjct: 8 GATAVGIRGAGYVVLAAEKRVSYGGFIISKTARKVYKITDYLGLALAGLFADLQAISKIL 67
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
Y IS A + + LY+ K P ++ G D G L +D
Sbjct: 68 RAEIEYYNIVTGRRISVRAVARLLATILYSYKYY-PFLSETLVGGLEAD-GTAKLYVMDP 125
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
G + D+ A GS + +GI E+ + +S + ++ V A ERD SG G
Sbjct: 126 LGSLI-EDDYAAIGSGAPIAIGILENGYSKDMSVDDAKKLAIAAVRAAIERDAMSGDGID 184
Query: 186 VYVVEPDKVTIR 197
+ V+ ++ +I+
Sbjct: 185 LLVIRREEDSIK 196
>gi|401838998|gb|EJT42383.1| PRE1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 198
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 84/191 (43%), Gaps = 10/191 (5%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
I+ + ++ + + +G + + ++K Q+SPH + G D +QFAE +
Sbjct: 4 ILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQAN 63
Query: 69 TANYVASEQSPISPDTFAAIASWELYARKLTS--PLFINPIIAGFYPDSGEVFLSTLDMA 126
Y E +SP ++ EL A+ + S P +N +I G+ + L +D
Sbjct: 64 IQLYSIREDYELSPQAVSSFVRKEL-AKSIRSRRPYQVNVLIGGYDKRRNKPELYQIDYL 122
Query: 127 GCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQ---LFEVCSQVVIQACERDTKSGWG 183
G + + + A G + + + ++P ++ E+ L ++C Q + + D K G
Sbjct: 123 GTKV-ELPYGAHGYSGFYTFSLLDRHYRPDMTTEEGLNLLKLCVQELEKRMPMDFK---G 178
Query: 184 ATVYVVEPDKV 194
V +V+ D V
Sbjct: 179 VIVKIVDKDGV 189
>gi|397775022|ref|YP_006542568.1| proteasome endopeptidase complex, beta subunit [Natrinema sp. J7-2]
gi|448343846|ref|ZP_21532763.1| proteasome endopeptidase complex, beta subunit [Natrinema gari JCM
14663]
gi|397684115|gb|AFO58492.1| proteasome endopeptidase complex, beta subunit [Natrinema sp. J7-2]
gi|445621929|gb|ELY75394.1| proteasome endopeptidase complex, beta subunit [Natrinema gari JCM
14663]
Length = 243
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 71/170 (41%), Gaps = 8/170 (4%)
Query: 29 GDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAI 88
G F + KV Q+ P L G F + Y A ++ D A +
Sbjct: 72 GRFVSNKNVQKVEQIHPTAALTLVGSVGGAQSFISTLRAEVNLYEARRGERMNIDALATL 131
Query: 89 ASWELYARKLTSPLF-INPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMG 147
A +AR P F I+PI+ G + V+ ++D AG + D+ GS + G
Sbjct: 132 AGN--FARG--GPFFAIHPILGGVDDEGSHVY--SIDPAGG-VMEDDYTVTGSGMQLAYG 184
Query: 148 IGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIR 197
E ++P +S E+ V ++ + A ERDT SG G + + + V I
Sbjct: 185 HLEQAYEPDMSNEEAKTVAARGIKSAVERDTGSGNGVFLAEITDEGVDIH 234
>gi|452980341|gb|EME80102.1| hypothetical protein MYCFIDRAFT_189770 [Pseudocercospora fijiensis
CIRAD86]
Length = 231
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 81/198 (40%), Gaps = 7/198 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
+N G +I+A+ K+ +G D G + +K+ Q+ ++ G AD A
Sbjct: 25 VNLGTSIMAINFKDGVILGADSRTTTGAYIANRVTDKLTQVHDTIWCCRSGSAADTQAVA 84
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGF-YPDSGEVFLS 121
+ + Y + + T AAI Y K L IIAG+ + G+V+
Sbjct: 85 DIVQYHLGMYGITNDEAPTTQTAAAIFQELCYENK--DALSAGIIIAGWDHRHGGQVYSI 142
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
L G K + GGS I G ++ W+ G++ E+ + + +A + D SG
Sbjct: 143 PL---GGSLHKQAYAIGGSGSTYIYGYCDAHWREGMTEEEGIKFVKGALQEAIKWDGSSG 199
Query: 182 WGATVYVVEPDKVTIRKI 199
G VV K IR +
Sbjct: 200 -GVIRMVVLTAKGAIRHL 216
>gi|392590513|gb|EIW79842.1| 20S proteasome subunit [Coniophora puteana RWD-64-598 SS2]
Length = 194
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 75/189 (39%), Gaps = 14/189 (7%)
Query: 11 AMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTA 70
A+ GK I D + + E+K+ +SPHL + G D +QFAE +
Sbjct: 6 AITGKGYVIIAADTTAARSIVKMKIDEDKIKTLSPHLLMAYSGEPGDTLQFAEYVERNIR 65
Query: 71 NYVASEQSPISPDTFAAIASW-------ELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
Y P+ P AA ASW L +R SP +N ++ G+ + L +
Sbjct: 66 LYQIRNLYPLRP---AAAASWIRRTLADSLRSR---SPYQVNLLVGGYDEATHSPSLHWI 119
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWG 183
D G + F A G + + + + P S E+ + + + + +R S
Sbjct: 120 DYLGTSV-EVPFGAHGYGSYFALSLLDRYHNPEASLEEGLDTLRRCINEVSKRLVVSPGK 178
Query: 184 ATVYVVEPD 192
V VV+ D
Sbjct: 179 YKVKVVDKD 187
>gi|378792316|pdb|3UNB|N Chain N, Mouse Constitutive 20s Proteasome In Complex With Pr-957
gi|378792330|pdb|3UNB|BB Chain b, Mouse Constitutive 20s Proteasome In Complex With Pr-957
gi|378792344|pdb|3UNB|PP Chain p, Mouse Constitutive 20s Proteasome In Complex With Pr-957
gi|378792358|pdb|3UNB|4 Chain 4, Mouse Constitutive 20s Proteasome In Complex With Pr-957
gi|378792372|pdb|3UNE|N Chain N, Mouse Constitutive 20s Proteasome
gi|378792386|pdb|3UNE|BB Chain b, Mouse Constitutive 20s Proteasome
gi|378792400|pdb|3UNE|PP Chain p, Mouse Constitutive 20s Proteasome
gi|378792414|pdb|3UNE|4 Chain 4, Mouse Constitutive 20s Proteasome
Length = 205
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 76/174 (43%), Gaps = 6/174 (3%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
I+A+ +G D G + +K+ + H++ G AD A+ +T +
Sbjct: 3 IMAVQFNGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVADAVTYQ 62
Query: 69 TANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSGEVFLSTLDMAG 127
+ P P A + ++ + L IIAG+ P + G+V+ ++ M G
Sbjct: 63 LGFHSIELNEP--PLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVY--SVPMGG 118
Query: 128 CETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
R++ F GGS + I G ++ ++ G++ ++ + + + A ERD SG
Sbjct: 119 MMVRQS-FAIGGSGSSYIYGYVDATYREGMTKDECLQFTANALALAMERDGSSG 171
>gi|365987183|ref|XP_003670423.1| hypothetical protein NDAI_0E03630 [Naumovozyma dairenensis CBS 421]
gi|343769193|emb|CCD25180.1| hypothetical protein NDAI_0E03630 [Naumovozyma dairenensis CBS 421]
Length = 195
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 80/188 (42%), Gaps = 4/188 (2%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
I+ + ++ + + +G + + ++K Q+SPH+ + G D +QFAE +
Sbjct: 4 ILGIKVQDSVILATSKAVTRGISILKDSDDKTRQLSPHILMSFSGEAGDTVQFAEYIQAN 63
Query: 69 TANYVASEQSPISPDTFAAIASWELYARKLTS--PLFINPIIAGFYPDSGEVFLSTLDMA 126
Y E +SP ++ EL A+ + S P N +I GF L +D
Sbjct: 64 IQLYAMREDYELSPHAVSSFVRQEL-AKSIRSRRPYQANVLIGGFDTKKDTPGLYQIDYL 122
Query: 127 GCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATV 186
G + + + A G + + + ++P ++ E+ ++ + + +R G V
Sbjct: 123 GTKV-ELPYAAHGYSGFYTFSLLDRHYRPDMTTEEGLKLLKLCITELEKRMPVDFKGVFV 181
Query: 187 YVVEPDKV 194
VV+ D +
Sbjct: 182 KVVDKDGI 189
>gi|449016420|dbj|BAM79822.1| 20S core proteasome subunit beta 1 [Cyanidioschyzon merolae strain
10D]
Length = 280
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 71/178 (39%), Gaps = 7/178 (3%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSP-HLYLINPGLCADGMQFAEK 64
G I+A+ + D G + +K+ ++P ++Y G AD A+
Sbjct: 79 GTTIMAVEYDGGVVLAADSRTSTGTYVANRVSDKITAVAPPYIYCARSGSAADTQMLADT 138
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSGEVFLSTL 123
+ Q P + T AA+ +Y K S L I AG+ P + G+V+ TL
Sbjct: 139 VRRYVTALALETQRPATVRTAAALFRELIYQNK--SRLTAGVICAGWDPLNGGQVYSITL 196
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
G + F GGS I G ++ ++ G++ E C Q A RD SG
Sbjct: 197 ---GGTLVRQPFSIGGSGSTYIYGYCDASYRKGMNREACIAFCQQAASLAMARDGSSG 251
>gi|281352167|gb|EFB27751.1| hypothetical protein PANDA_013817 [Ailuropoda melanoleuca]
Length = 238
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 79/180 (43%), Gaps = 6/180 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ + +G D G + +K+ + ++ G AD A
Sbjct: 31 VSTGTTIMAVQFEGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVA 90
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSGEVFLS 121
+ +T + + P P A + ++ + L IIAG+ P + G+V+
Sbjct: 91 DAVTYQLGFHSIELNEP--PLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVY-- 146
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
++ M G R++ F GGS + I G ++ ++ G++ E+ + + + A ERD SG
Sbjct: 147 SVPMGGMMVRQS-FAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSG 205
>gi|118575464|ref|YP_875207.1| 20S proteasome, alpha and beta subunit [Cenarchaeum symbiosum A]
gi|302595701|sp|A0RU86.1|PSB1_CENSY RecName: Full=Proteasome subunit beta 1; AltName: Full=20S
proteasome beta subunit 1; AltName: Full=Proteasome core
protein PsmB 1; Flags: Precursor
gi|118193985|gb|ABK76903.1| 20S proteasome, alpha and beta subunit [Cenarchaeum symbiosum A]
Length = 193
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 82/176 (46%), Gaps = 15/176 (8%)
Query: 29 GDFTIAEYENKVHQMSPHLYLINPGLCAD----GMQFAEKMTLRTANYVASEQSPISPDT 84
G+F +++ K Q++P++ GL AD +Q + +R + + I P++
Sbjct: 26 GNFLVSKNTRKTFQITPYVGAACAGLVADMQILSLQISALAKIRKMDL----KRDIPPNS 81
Query: 85 FAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNM 144
A + S +Y R+ PL I+ G GE + TLD G ++ A G+ M
Sbjct: 82 VAKMMSNMMYERRFF-PLLTQVIVGGVV---GEPAIYTLDSLGS-VLPDEYAAVGTGAEM 136
Query: 145 IMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIA 200
+G+ + ++ G+S + ++ + + A RD+ SG G + ++ + R+IA
Sbjct: 137 ALGVLDPQFKSGMSEKDAVDLAVRGIRSAALRDSFSGDGLDILALDANGA--REIA 190
>gi|308463733|ref|XP_003094138.1| CRE-PBS-1 protein [Caenorhabditis remanei]
gi|308248129|gb|EFO92081.1| CRE-PBS-1 protein [Caenorhabditis remanei]
Length = 239
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 81/189 (42%), Gaps = 6/189 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G ++AM +G D G F + NK+ ++ ++ + G AD A
Sbjct: 20 ISTGTTLIAMEYNGGVVVGTDSRTSAGSFITSRATNKITPITENMVVCRSGSAADTQAIA 79
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPD-SGEVFLS 121
+ Y +E P++ + I LY + L + ++AG+ + G+V+
Sbjct: 80 DIAKYHIDVYTMTENKPVTIYRSSQIFRQFLYNYR--EQLSASVLVAGWDSELGGQVY-- 135
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
+ + G +R+ A GS + G +S W+P L+ ++ + Q V A RD SG
Sbjct: 136 AIPIGGFVSRQRS-TASGSGSTFVQGFLDSQWRPDLTLDECKAIVKQAVGLATFRDGSSG 194
Query: 182 WGATVYVVE 190
+ V++
Sbjct: 195 GVVRLAVID 203
>gi|296242989|ref|YP_003650476.1| proteasome endopeptidase complex subunit beta [Thermosphaera
aggregans DSM 11486]
gi|296095573|gb|ADG91524.1| proteasome endopeptidase complex, beta component [Thermosphaera
aggregans DSM 11486]
Length = 202
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 79/186 (42%), Gaps = 5/186 (2%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQ 60
MS+ G AI + + + + L F ++ KV+ ++PH+ + GL D
Sbjct: 1 MSMLPGTAI-GVKTREGVVLASEKRLTYDGFVLSSSVKKVYAITPHVGVGFAGLMGDVNI 59
Query: 61 FAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFL 120
+ + Y I A + S LY+ KL +P+ + I+ G Y D+G L
Sbjct: 60 LKRMLEMEAKYYELQHGREIRVRGLAKMLSVILYSYKL-APM-LTEIVVGGYDDNGPQ-L 116
Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKS 180
LD G + + A GS + +G E + P +S E+ ++ + V ERD S
Sbjct: 117 YILDPVGSLIEE-KYAALGSGAQLALGYIEPRYNPDISLEEAEKLVVEAVKTVIERDVLS 175
Query: 181 GWGATV 186
G G +
Sbjct: 176 GDGVDI 181
>gi|300121066|emb|CBK21448.2| unnamed protein product [Blastocystis hominis]
Length = 230
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 72/196 (36%), Gaps = 12/196 (6%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE-- 63
G I+A+A +C +G D G + NK+ Q+ +++ G AD +
Sbjct: 14 GTTIIAIALGDCVIMGADSRSSAGSYVANRITNKIEQIDDRIFMCRSGSAADTQKIGNII 73
Query: 64 KMTLRTANY------VASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSG 116
+ L Y +A ++P A K L IIAG D
Sbjct: 74 RQNLDFFKYICFYLLIARTTYGMNPIVRNAATLGHKIIYKYKDQLQAGIIIAGIDDVDGA 133
Query: 117 EVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACER 176
++ TL G + + GGS I G +S + P +S E+ E + V A R
Sbjct: 134 SIYEITL---GGSMLRVNVALGGSGSTYIYGFVDSNYNPNMSVEEGVEFVRRAVQLAISR 190
Query: 177 DTKSGWGATVYVVEPD 192
D SG V+ D
Sbjct: 191 DGHSGGVVRTVVIRRD 206
>gi|341897914|gb|EGT53849.1| CBN-PBS-1 protein [Caenorhabditis brenneri]
Length = 239
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 81/189 (42%), Gaps = 6/189 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G ++AM +G D G F + NK+ ++ ++ + G AD A
Sbjct: 20 ISTGTTLIAMEYNGGVVVGTDSRTSAGSFITSRATNKITPITENMVVCRSGSAADTQAIA 79
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPD-SGEVFLS 121
+ Y +E P++ + I LY + L + ++AG+ + G+V+
Sbjct: 80 DIAKYHIDVYTMTENKPVTIYRSSQIFRQFLYNYR--EQLSASVLVAGWDAELGGQVY-- 135
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
+ + G +R+ A GS + G +S W+P L+ ++ + Q V A RD SG
Sbjct: 136 AIPIGGFVSRQRS-TASGSGSTFVQGFLDSQWRPDLTLDECKAIVKQAVGLATFRDGSSG 194
Query: 182 WGATVYVVE 190
+ V++
Sbjct: 195 GVVRLAVID 203
>gi|151944720|gb|EDN62979.1| 22.6 kDa proteasome subunit [Saccharomyces cerevisiae YJM789]
Length = 198
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 84/191 (43%), Gaps = 10/191 (5%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
I+ + ++ + + +G + + ++K Q+SPH + G D +QFAE +
Sbjct: 4 ILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQAN 63
Query: 69 TANYVASEQSPISPDTFAAIASWELYARKLTS--PLFINPIIAGFYPDSGEVFLSTLDMA 126
Y E +SP ++ EL A+ + S P +N +I G+ + L +D
Sbjct: 64 IQLYSIREDYELSPQAVSSFVRQEL-AKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYL 122
Query: 127 GCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQ---LFEVCSQVVIQACERDTKSGWG 183
G + + + A G + + + ++P ++ E+ L ++C Q + + D K G
Sbjct: 123 GTKV-ELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLNLLKLCVQELEKRMPMDFK---G 178
Query: 184 ATVYVVEPDKV 194
V +V+ D +
Sbjct: 179 VIVKIVDKDGI 189
>gi|301778105|ref|XP_002924515.1| PREDICTED: proteasome subunit beta type-6-like [Ailuropoda
melanoleuca]
Length = 239
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 79/180 (43%), Gaps = 6/180 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ + +G D G + +K+ + ++ G AD A
Sbjct: 31 VSTGTTIMAVQFEGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVA 90
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSGEVFLS 121
+ +T + + P P A + ++ + L IIAG+ P + G+V+
Sbjct: 91 DAVTYQLGFHSIELNEP--PLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVY-- 146
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
++ M G R++ F GGS + I G ++ ++ G++ E+ + + + A ERD SG
Sbjct: 147 SVPMGGMMVRQS-FAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSG 205
>gi|294940012|ref|XP_002782634.1| proteasome subunit beta type, putative [Perkinsus marinus ATCC
50983]
gi|239894486|gb|EER14429.1| proteasome subunit beta type, putative [Perkinsus marinus ATCC
50983]
Length = 241
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/216 (19%), Positives = 91/216 (42%), Gaps = 22/216 (10%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
+++GG +A+ G + + D+ + +G +K+ +++ + G+ AD +
Sbjct: 34 MDNGGTCIAVPGADYCVVSTDNRVSKGYSIATRNGSKITKLTERCVITTSGMLADQITLH 93
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPD-SGEVF-- 119
+ + R A YV + + A + S LY ++ P + +IAG + G+V+
Sbjct: 94 KVLKNRVARYVHEHRREPTVGAVAQMLSNILYYKRFF-PYYTFNMIAGIDENGKGKVYGY 152
Query: 120 --LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFW---------QPGLSPEQLFEVCSQ 168
+ + + C A GS +++ I ++ L+ Q+ E+C
Sbjct: 153 DAIGSFESIPCG-------AQGSGSSLVQSILDNQLTKAHQQLASHEALTEGQMVELCKD 205
Query: 169 VVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
V+ A ERD +G T+ ++ + ++ R D
Sbjct: 206 VIASATERDIHTGDSNTICTIDSTGIKMQTFELRKD 241
>gi|6320849|ref|NP_010928.1| proteasome core particle subunit beta 4 [Saccharomyces cerevisiae
S288c]
gi|730378|sp|P22141.2|PSB4_YEAST RecName: Full=Proteasome subunit beta type-4; AltName:
Full=Macropain subunit C11; AltName: Full=Multicatalytic
endopeptidase complex subunit C11; AltName:
Full=Proteasome component C11; AltName: Full=Proteinase
YSCE subunit 11
gi|3114279|pdb|1RYP|K Chain K, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
gi|3114293|pdb|1RYP|Y Chain Y, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
gi|11513422|pdb|1G65|J Chain J, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
gi|11513436|pdb|1G65|X Chain X, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
gi|11514001|pdb|1G0U|J Chain J, A Gated Channel Into The Proteasome Core Particle
gi|11514015|pdb|1G0U|X Chain X, A Gated Channel Into The Proteasome Core Particle
gi|14488815|pdb|1FNT|K Chain K, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
gi|14488829|pdb|1FNT|Y Chain Y, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
gi|20150386|pdb|1JD2|J Chain J, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
gi|20150393|pdb|1JD2|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
gi|75765709|pdb|1Z7Q|K Chain K, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
gi|75765723|pdb|1Z7Q|Y Chain Y, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
gi|93279377|pdb|2F16|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
gi|93279391|pdb|2F16|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
gi|99032211|pdb|2FAK|J Chain J, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
gi|99032225|pdb|2FAK|X Chain X, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
gi|112490852|pdb|2GPL|J Chain J, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
gi|112490866|pdb|2GPL|X Chain X, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
gi|178847469|pdb|2ZCY|J Chain J, Yeast 20s Proteasome:syringolin A-Complex
gi|178847483|pdb|2ZCY|X Chain X, Yeast 20s Proteasome:syringolin A-Complex
gi|178847511|pdb|3BDM|J Chain J, Yeast 20s Proteasome:glidobactin A-Complex
gi|178847525|pdb|3BDM|X Chain X, Yeast 20s Proteasome:glidobactin A-Complex
gi|190016376|pdb|3D29|J Chain J, Proteasome Inhibition By Fellutamide B
gi|190016390|pdb|3D29|X Chain X, Proteasome Inhibition By Fellutamide B
gi|197725330|pdb|3E47|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
gi|197725344|pdb|3E47|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
gi|211939221|pdb|3DY3|J Chain J, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
gi|211939235|pdb|3DY3|X Chain X, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
gi|211939249|pdb|3DY4|J Chain J, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
gi|211939263|pdb|3DY4|X Chain X, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
gi|238828246|pdb|3GPJ|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
gi|238828260|pdb|3GPJ|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
gi|258588330|pdb|3GPT|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
gi|258588344|pdb|3GPT|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
gi|258588358|pdb|3GPW|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
gi|258588372|pdb|3GPW|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
gi|258588552|pdb|3HYE|J Chain J, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
gi|258588566|pdb|3HYE|X Chain X, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
gi|298508232|pdb|1VSY|K Chain K, Proteasome Activator Complex
gi|298508246|pdb|1VSY|Y Chain Y, Proteasome Activator Complex
gi|298508448|pdb|3L5Q|O Chain O, Proteasome Activator Complex
gi|298508462|pdb|3L5Q|1 Chain 1, Proteasome Activator Complex
gi|323462945|pdb|3NZJ|J Chain J, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
gi|323462959|pdb|3NZJ|X Chain X, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
gi|323462973|pdb|3NZW|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
gi|323462987|pdb|3NZW|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
gi|323463001|pdb|3NZX|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
gi|323463015|pdb|3NZX|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
gi|330689390|pdb|3MG4|J Chain J, Structure Of Yeast 20s Proteasome With Compound 1
gi|330689404|pdb|3MG4|X Chain X, Structure Of Yeast 20s Proteasome With Compound 1
gi|333361153|pdb|3MG0|J Chain J, Structure Of Yeast 20s Proteasome With Bortezomib
gi|333361167|pdb|3MG0|X Chain X, Structure Of Yeast 20s Proteasome With Bortezomib
gi|333361181|pdb|3MG6|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
gi|333361195|pdb|3MG6|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
gi|333361209|pdb|3MG7|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
gi|333361223|pdb|3MG7|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
gi|333361237|pdb|3MG8|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
gi|333361251|pdb|3MG8|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
gi|335892350|pdb|3OKJ|J Chain J, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
gi|335892364|pdb|3OKJ|X Chain X, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
gi|340780428|pdb|3OEU|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
gi|340780442|pdb|3OEU|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
gi|340780456|pdb|3OEV|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
gi|340780470|pdb|3OEV|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
gi|350610681|pdb|3TDD|J Chain J, Crystal Structure Of Yeast Cp In Complex With Belactosin C
gi|350610695|pdb|3TDD|X Chain X, Crystal Structure Of Yeast Cp In Complex With Belactosin C
gi|359545855|pdb|3SHJ|J Chain J, Proteasome In Complex With Hydroxyurea Derivative Hu10
gi|359545869|pdb|3SHJ|X Chain X, Proteasome In Complex With Hydroxyurea Derivative Hu10
gi|378792250|pdb|3UN4|J Chain J, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
gi|378792264|pdb|3UN4|X Chain X, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
gi|378792284|pdb|3UN8|J Chain J, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
gi|378792298|pdb|3UN8|X Chain X, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
gi|390980825|pdb|3SDI|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
gi|390980839|pdb|3SDI|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
gi|390980853|pdb|3SDK|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
gi|390980867|pdb|3SDK|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
gi|402550741|pdb|4GK7|J Chain J, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
gi|402550755|pdb|4GK7|X Chain X, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
gi|403071957|pdb|4B4T|4 Chain 4, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
gi|403072201|pdb|4G4S|K Chain K, Structure Of Proteasome-Pba1-Pba2 Complex
gi|409973869|pdb|4FZC|J Chain J, 20s Yeast Proteasome In Complex With Cepafungin I
gi|409973883|pdb|4FZC|X Chain X, 20s Yeast Proteasome In Complex With Cepafungin I
gi|409973897|pdb|4FZG|J Chain J, 20s Yeast Proteasome In Complex With Glidobactin
gi|409973911|pdb|4FZG|X Chain X, 20s Yeast Proteasome In Complex With Glidobactin
gi|444302348|pdb|4INR|J Chain J, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
gi|444302362|pdb|4INR|X Chain X, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
gi|444302376|pdb|4INT|J Chain J, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
gi|444302390|pdb|4INT|X Chain X, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
gi|444302404|pdb|4INU|J Chain J, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
gi|444302418|pdb|4INU|X Chain X, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
gi|311329|emb|CAA40149.1| proteinase yscE subunit 11 [Saccharomyces cerevisiae]
gi|603604|gb|AAB64545.1| Pre1p: 22.6 kDa subunit of proteinase yscE [Saccharomyces
cerevisiae]
gi|45269505|gb|AAS56133.1| YER012W [Saccharomyces cerevisiae]
gi|190405573|gb|EDV08840.1| 22.6 kDa proteasome subunit [Saccharomyces cerevisiae RM11-1a]
gi|207346028|gb|EDZ72648.1| YER012Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256273753|gb|EEU08678.1| Pre1p [Saccharomyces cerevisiae JAY291]
gi|259145918|emb|CAY79178.1| Pre1p [Saccharomyces cerevisiae EC1118]
gi|285811635|tpg|DAA07663.1| TPA: proteasome core particle subunit beta 4 [Saccharomyces
cerevisiae S288c]
gi|323309365|gb|EGA62582.1| Pre1p [Saccharomyces cerevisiae FostersO]
gi|323333907|gb|EGA75296.1| Pre1p [Saccharomyces cerevisiae AWRI796]
gi|323337919|gb|EGA79158.1| Pre1p [Saccharomyces cerevisiae Vin13]
gi|323348955|gb|EGA83191.1| Pre1p [Saccharomyces cerevisiae Lalvin QA23]
gi|323355420|gb|EGA87244.1| Pre1p [Saccharomyces cerevisiae VL3]
gi|349577668|dbj|GAA22836.1| K7_Pre1p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365766037|gb|EHN07538.1| Pre1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299958|gb|EIW11050.1| Pre1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 198
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 84/191 (43%), Gaps = 10/191 (5%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
I+ + ++ + + +G + + ++K Q+SPH + G D +QFAE +
Sbjct: 4 ILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQAN 63
Query: 69 TANYVASEQSPISPDTFAAIASWELYARKLTS--PLFINPIIAGFYPDSGEVFLSTLDMA 126
Y E +SP ++ EL A+ + S P +N +I G+ + L +D
Sbjct: 64 IQLYSIREDYELSPQAVSSFVRQEL-AKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYL 122
Query: 127 GCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQ---LFEVCSQVVIQACERDTKSGWG 183
G + + + A G + + + ++P ++ E+ L ++C Q + + D K G
Sbjct: 123 GTKV-ELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLLKLCVQELEKRMPMDFK---G 178
Query: 184 ATVYVVEPDKV 194
V +V+ D +
Sbjct: 179 VIVKIVDKDGI 189
>gi|384253987|gb|EIE27461.1| N-terminal nucleophile aminohydrolase [Coccomyxa subellipsoidea
C-169]
Length = 249
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 83/202 (41%), Gaps = 16/202 (7%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQ 60
M N+GG VA+AG + + L G ++ + V ++S L +++PG AD
Sbjct: 36 MYDNNGGTCVAVAGNDYCIVASSTRLSTGFSILSRDVSMVLKLSDKLMILSPGFQADAKT 95
Query: 61 FAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFL 120
+ + R Y P+S A + LY ++ P + I AG + G+ +
Sbjct: 96 LHKVLQQRYIRYQFDHGRPMSVAACAQLLGNTLYYKRFF-PYYTFNICAGL-DEEGKGAV 153
Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGES-------------FWQPGLSPEQLFEVCS 167
+ D G R + + GS +++I + ++ W L +Q ++
Sbjct: 154 YSYDAIGSHER-SGYAVQGSGKDLIQPVLDNQLKAASPLVLPPENWMSSLPLDQAVDLVR 212
Query: 168 QVVIQACERDTKSGWGATVYVV 189
+ A ERD +G +Y++
Sbjct: 213 DAFVSAGERDIYTGDAVEIYIM 234
>gi|328768529|gb|EGF78575.1| hypothetical protein BATDEDRAFT_30482 [Batrachochytrium
dendrobatidis JAM81]
Length = 194
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 65/155 (41%), Gaps = 4/155 (2%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
++A+ GK+ D + + E+K +++ H ++ G D +QFAE +
Sbjct: 4 LLAITGKDFVLTAADDTTARSIVVMKRGEDKSRELTNHTLMVYSGEAGDTVQFAEYIQCN 63
Query: 69 TANYVASEQSPISPDTFAAIASWELYARKLTS--PLFINPIIAGFYPDSGEVFLSTLDMA 126
+ + +S + A+ EL A L S P +N +IAG P +G L +D
Sbjct: 64 SRLHSIRHGIELSTNAIASFTRMEL-ATSLRSRNPYHVNVLIAGANPKTGAPELYWIDYI 122
Query: 127 GCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQ 161
K F A G A + + +W ++ E+
Sbjct: 123 S-NMSKLKFAAHGYASYFCLSTMDRYWHENITQEE 156
>gi|73955410|ref|XP_849241.1| PREDICTED: proteasome subunit beta type-6 [Canis lupus familiaris]
Length = 239
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 79/180 (43%), Gaps = 6/180 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ + +G D G + +K+ + ++ G AD A
Sbjct: 31 VSTGTTIMAVQFEGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVA 90
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSGEVFLS 121
+ +T + + P P A + ++ + L IIAG+ P + G+V+
Sbjct: 91 DAVTYQLGFHSIELNEP--PLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVY-- 146
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
++ M G R++ F GGS + I G ++ ++ G++ E+ + + + A ERD SG
Sbjct: 147 SVPMGGMMVRQS-FAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSG 205
>gi|148227692|ref|NP_001079339.1| proteasome (prosome, macropain) subunit, beta type, 9 (large
multifunctional peptidase 2) [Xenopus laevis]
gi|2055297|dbj|BAA19759.1| LMP2 [Xenopus laevis]
gi|213623168|gb|AAI69381.1| Proteasome (prosome, macropain) subunit, beta type, 9 (large
multifunctional protease 2) [Xenopus laevis]
gi|213624900|gb|AAI69377.1| Proteasome (prosome, macropain) subunit, beta type, 9 (large
multifunctional protease 2) [Xenopus laevis]
Length = 215
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 76/191 (39%), Gaps = 7/191 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ +G D + GD + NK+ + +Y G AD A
Sbjct: 13 VSTGTTIIAVEFDGGVVLGSDSRVSAGDAVVNRVFNKLAPVHQRIYCALSGSAADAQAVA 72
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLST 122
+ + ++P P AA + + K + + I+AG+ G T
Sbjct: 73 DMAHYHMEVHSIEMEAP--PLVLAAANLIKGISYKYKEEIMAHLIVAGWDRKHGGQVYGT 130
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGW 182
L G + F GGS I G +S ++PG+S E+ Q + A ERD S
Sbjct: 131 L---GGMIIRQPFTIGGSGSTYIYGFVDSKFKPGMSREECERFAVQALSLAMERDGSS-- 185
Query: 183 GATVYVVEPDK 193
G +Y+V K
Sbjct: 186 GGVIYLVTVTK 196
>gi|194766351|ref|XP_001965288.1| GF24340 [Drosophila ananassae]
gi|190617898|gb|EDV33422.1| GF24340 [Drosophila ananassae]
Length = 205
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 79/190 (41%), Gaps = 9/190 (4%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
++ + G + + D + + + +NK+H++S +L + G D QF E ++
Sbjct: 4 LLGIKGPDFVMLAADTTHARSIVVMKDDQNKIHKVSNNLLISTIGESGDTEQFTEFISKN 63
Query: 69 TANYVASEQSPISPDTFAAIASWEL--YARKLTSPLFINPIIAGFYPDSGE--VFLSTLD 124
A Y +SP A L Y R T P + +AG+ P+ G F+ L
Sbjct: 64 IALYKMRNGYDLSPHAAAHFTRKNLAEYLRSRT-PYQVFMFVAGYDPNDGPELTFIDYL- 121
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ ++ G I + +W P ++ ++ ++V + V++ +R +
Sbjct: 122 ---ASAKSVNYAGHGYGAIFASSIYDRYWHPKITQDEAYDVLKKCVVEIQKRLVINLPNF 178
Query: 185 TVYVVEPDKV 194
V VV+ D V
Sbjct: 179 NVSVVDKDGV 188
>gi|396458032|ref|XP_003833629.1| similar to proteasome subunit beta type-6 precursor [Leptosphaeria
maculans JN3]
gi|312210177|emb|CBX90264.1| similar to proteasome subunit beta type-6 precursor [Leptosphaeria
maculans JN3]
Length = 228
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 75/180 (41%), Gaps = 6/180 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
+N G +I+A+ K+ + D G + +K+ Q+ ++ G AD A
Sbjct: 24 VNLGTSIMAINFKDGVILAADSRTTTGAYIANRVTDKLTQVHDTIWCCRSGSAADTQAVA 83
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGF-YPDSGEVFLS 121
+ + Y A+ P + T AAI Y+ K L IIAG+ + G+V+
Sbjct: 84 DIVQYHLGMYGATNDEPPTTQTAAAIFQELCYSNK--DQLSAGLIIAGWDHRHGGQVYSI 141
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
L G K + GGS I G ++ W+ +S E+ + + +A + D SG
Sbjct: 142 PL---GGSLHKQAYAIGGSGSTYIYGYCDANWRENMSEEEGIKFVKGALAEAIKWDGSSG 198
>gi|297527490|ref|YP_003669514.1| Proteasome endopeptidase complex [Staphylothermus hellenicus DSM
12710]
gi|297256406|gb|ADI32615.1| Proteasome endopeptidase complex [Staphylothermus hellenicus DSM
12710]
Length = 210
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 70/173 (40%), Gaps = 3/173 (1%)
Query: 20 IGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSP 79
+ D G + K+ ++ ++ + GL AD AE+ Y P
Sbjct: 25 LAADKRATAGSLVAHKRVKKIIRIDDYIAMTISGLVADAEIIAEQARFIARKYKLELGRP 84
Query: 80 ISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGG 139
I A+ S L SP + ++ G+ D+ L +D+ G + + ++A G
Sbjct: 85 IKVSGLASNLSIILNTYLRASPYIVQLLLGGY--DNNGPHLFYMDLYGSLSEE-KYMATG 141
Query: 140 SAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPD 192
S G+ E ++ LS E+ E+ + V A RD SG G + V+ PD
Sbjct: 142 SGSPTAFGVLEEGYRSDLSLEEAKELAFKAVSAATRRDGFSGEGVDIVVIGPD 194
>gi|114665820|ref|XP_511290.2| PREDICTED: proteasome subunit beta type-6 isoform 3 [Pan
troglodytes]
gi|332847027|ref|XP_003315370.1| PREDICTED: proteasome subunit beta type-6 [Pan troglodytes]
gi|397477772|ref|XP_003810243.1| PREDICTED: proteasome subunit beta type-6 isoform 1 [Pan paniscus]
gi|397477774|ref|XP_003810244.1| PREDICTED: proteasome subunit beta type-6 isoform 2 [Pan paniscus]
gi|397477776|ref|XP_003810245.1| PREDICTED: proteasome subunit beta type-6 isoform 3 [Pan paniscus]
gi|410050910|ref|XP_003952994.1| PREDICTED: proteasome subunit beta type-6 [Pan troglodytes]
Length = 239
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 78/180 (43%), Gaps = 6/180 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ +G D G + +K+ + ++ G AD A
Sbjct: 31 VSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVA 90
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSGEVFLS 121
+ +T + + P P A + ++ + L IIAG+ P + G+V+
Sbjct: 91 DAVTYQLGFHSIELNEP--PLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVY-- 146
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
++ M G R++ F GGS + I G ++ ++ G++ E+ + + + A ERD SG
Sbjct: 147 SVPMGGMMVRQS-FAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSG 205
>gi|148234532|ref|NP_001084761.1| uncharacterized protein LOC431796 [Xenopus laevis]
gi|47125243|gb|AAH70836.1| MGC84496 protein [Xenopus laevis]
Length = 199
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 79/188 (42%), Gaps = 5/188 (2%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
++ + G + + D + + +K+ +MS + L+ G D +QFAE +
Sbjct: 4 LIGIQGNDFVLVAADTVCANSIIQMKHDMDKMFKMSEKILLLCVGEAGDTVQFAEYIQKN 63
Query: 69 TANYVASEQSPISPDTFAAIASWEL--YARKLTSPLFINPIIAGFYPDSGEVFLSTLDMA 126
Y +SP A L Y R T P +N ++AG+ +G L +D
Sbjct: 64 VQLYKMRNGYELSPTAAANFTRRNLADYLRSRT-PYHVNLLLAGYDEHAGPS-LYYMDYL 121
Query: 127 GCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATV 186
KT F A G + + I + +++P L+ E E+ + + + +R + TV
Sbjct: 122 SA-LAKTRFAAHGYGAYLTLSILDRYYKPDLTREDAVELLKKCISELQKRFILNLPSFTV 180
Query: 187 YVVEPDKV 194
V++ D +
Sbjct: 181 RVIDKDGI 188
>gi|296420572|ref|XP_002839843.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636049|emb|CAZ84034.1| unnamed protein product [Tuber melanosporum]
Length = 175
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 74/170 (43%), Gaps = 12/170 (7%)
Query: 37 ENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSP--ISPDTFAAIASWELY 94
++K ++PH + G D +QFAE + Y S +SP A+ +L
Sbjct: 11 DDKTRTLNPHTLMAFSGEAGDTVQFAEYIQANVQLYGMRNNSKWQLSPSAVASFVRRQL- 69
Query: 95 ARKLTS--PLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESF 152
A+ L S P ++N +I GF +G+ L LD + + A G AQ + I +
Sbjct: 70 AKSLRSRNPYYVNLLIGGFDCTTGKPHLYWLDYLA-SSAAVPYAAHGYAQYYCLSILDKH 128
Query: 153 WQPGLSPEQ---LFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKI 199
P ++ E+ L +C +I+ D K G TV V + V + +I
Sbjct: 129 HHPDITLEEGIKLMRMCHDELIKRLPIDFK---GLTVKAVTENGVEVVQI 175
>gi|315425045|dbj|BAJ46718.1| proteasome endopeptidase complex [Candidatus Caldiarchaeum
subterraneum]
Length = 187
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 76/182 (41%), Gaps = 4/182 (2%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
IV + + + D +G F ++ K+ ++ L + GL +D + +
Sbjct: 4 IVGLKAVDGVVLASDRRASKGFFIASKTTQKIMKVDDSLAIAVAGLLSDAVYLVNVVRAE 63
Query: 69 TANYVASEQSPISPDTFAAIASWELYA-RKLTSPLFINPIIAGFYPDSGEVFLSTLDMAG 127
P+S + + S Y+ + P + I+AG + VF S DM+G
Sbjct: 64 RKLIALRRGYPLSVAESSKLISNLFYSGLRNYIPYYAELIVAGVDDEGPHVFSS--DMSG 121
Query: 128 CETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVY 187
+ +FV+ GS + G+ ES + PGL E+ + + V A +RD SG G V
Sbjct: 122 SMVAE-EFVSSGSGSPVAYGVLESLYTPGLKLEEARAIAVKAVEAAMQRDPGSGNGVDVL 180
Query: 188 VV 189
+
Sbjct: 181 AI 182
>gi|170089715|ref|XP_001876080.1| 20S proteasome subunit [Laccaria bicolor S238N-H82]
gi|164649340|gb|EDR13582.1| 20S proteasome subunit [Laccaria bicolor S238N-H82]
Length = 194
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 77/191 (40%), Gaps = 14/191 (7%)
Query: 11 AMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTA 70
A+ GK + D + + E+K+ +SPHL + G D +QFAE +
Sbjct: 6 AITGKGYVIVAADTTSARSIVKMKIDEDKIKTLSPHLLMAYSGEPGDTVQFAEYVERNIR 65
Query: 71 NYVASEQSPISPDTFAAIASW-------ELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
Y P+ P +A ASW L +RK P +N ++ G+ S + L +
Sbjct: 66 LYQIRNLYPLRP---SAAASWIRRALAESLRSRK---PYSVNLLLGGYDTASHDPHLYWI 119
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWG 183
D G T + F A G + + + + P + E+ + + + +R S
Sbjct: 120 DYLGTMT-EVPFAAHGYGSYFALSLLDRYHNPEATIEEGLATLKRCIDEVAKRLVVSPGK 178
Query: 184 ATVYVVEPDKV 194
V +V+ D +
Sbjct: 179 YKVKIVDQDGI 189
>gi|302814429|ref|XP_002988898.1| hypothetical protein SELMODRAFT_235631 [Selaginella moellendorffii]
gi|300143235|gb|EFJ09927.1| hypothetical protein SELMODRAFT_235631 [Selaginella moellendorffii]
Length = 226
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 84/214 (39%), Gaps = 16/214 (7%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
N+GG VA+AG + + D L G + +K+ ++S + + G AD +
Sbjct: 16 NNGGTCVAIAGLDYCIVAADTRLSLGYSILTRGHSKLFKLSDTAVMASSGFQADVRTLQK 75
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y P+S A + S LY ++ P + ++ G G+ + T
Sbjct: 76 NLEARQKGYYHQHGKPMSCPGMAQLLSNTLYYKRFF-PYYSFNVLGGL-DTEGKGCVYTY 133
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGES--------FWQPG-----LSPEQLFEVCSQVV 170
D G R T + GS +IM I ++ + P L+ ++ E+
Sbjct: 134 DAVGSYER-TGYSTQGSGAELIMPILDNQLKSASPLLYPPRETATPLTEQEALEIVKDTF 192
Query: 171 IQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A ER +G G + V+ D + + + D
Sbjct: 193 ASATERQIYTGDGLEIVVINKDGIHKEYLDLKKD 226
>gi|23110925|ref|NP_002789.1| proteasome subunit beta type-6 isoform 1 proprotein [Homo sapiens]
gi|20532407|sp|P28072.4|PSB6_HUMAN RecName: Full=Proteasome subunit beta type-6; AltName:
Full=Macropain delta chain; AltName: Full=Multicatalytic
endopeptidase complex delta chain; AltName:
Full=Proteasome delta chain; AltName: Full=Proteasome
subunit Y; Flags: Precursor
gi|12654059|gb|AAH00835.1| Proteasome (prosome, macropain) subunit, beta type, 6 [Homo
sapiens]
gi|32879961|gb|AAP88811.1| proteasome (prosome, macropain) subunit, beta type, 6 [Homo
sapiens]
gi|48146247|emb|CAG33346.1| PSMB6 [Homo sapiens]
gi|60654877|gb|AAX32003.1| proteasome subunit beta type 6 [synthetic construct]
gi|60654879|gb|AAX32004.1| proteasome subunit beta type 6 [synthetic construct]
gi|60654881|gb|AAX32005.1| proteasome subunit beta type 6 [synthetic construct]
gi|60654883|gb|AAX32006.1| proteasome subunit beta type 6 [synthetic construct]
gi|119610813|gb|EAW90407.1| proteasome (prosome, macropain) subunit, beta type, 6 [Homo
sapiens]
gi|123980626|gb|ABM82142.1| proteasome (prosome, macropain) subunit, beta type, 6 [synthetic
construct]
gi|123995447|gb|ABM85325.1| proteasome (prosome, macropain) subunit, beta type, 6 [synthetic
construct]
gi|189053089|dbj|BAG34711.1| unnamed protein product [Homo sapiens]
gi|208967174|dbj|BAG73601.1| proteasome (prosome, macropain) subunit, beta type, 6 [synthetic
construct]
Length = 239
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 78/180 (43%), Gaps = 6/180 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ +G D G + +K+ + ++ G AD A
Sbjct: 31 VSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVA 90
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSGEVFLS 121
+ +T + + P P A + ++ + L IIAG+ P + G+V+
Sbjct: 91 DAVTYQLGFHSIELNEP--PLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVY-- 146
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
++ M G R++ F GGS + I G ++ ++ G++ E+ + + + A ERD SG
Sbjct: 147 SVPMGGMMVRQS-FAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSG 205
>gi|443688987|gb|ELT91509.1| hypothetical protein CAPTEDRAFT_172055 [Capitella teleta]
Length = 229
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 90/209 (43%), Gaps = 12/209 (5%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG+I+A+AG + + D L +G + K ++++ L + G D + +
Sbjct: 24 NGGSIMAIAGDDFAVVASDTRLSEGFSIHSRNAPKTYKLTDKTVLASAGFHGDVLTEIKV 83
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y +S AA+ + LY ++ P ++ II G + G+ + + D
Sbjct: 84 LEARLKMYEHEHGKKMSSQAIAAMLATILYHKRFF-PYYVYNIIGGL-DEEGKGCVYSYD 141
Query: 125 MAGCETRKTDFVAGGSAQNMIM-----GIG----ESFWQPGLSPEQLFEVCSQVVIQACE 175
G R+ + AGGSA ++ IG + + LS ++ ++ + I A E
Sbjct: 142 PVGSYEREV-YRAGGSAGPLLQPLLDNQIGFKNQQGVEKVSLSKDKAIKLIKDIFISAAE 200
Query: 176 RDTKSGWGATVYVVEPDKVTIRKIATRMD 204
RD +G + VV + V+ R D
Sbjct: 201 RDIYTGDSLHLKVVTKEGVSEETFPLRRD 229
>gi|224144619|ref|XP_002187722.1| PREDICTED: proteasome subunit beta type-6 [Taeniopygia guttata]
Length = 233
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 76/180 (42%), Gaps = 6/180 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ IG D G + +K+ + ++ G AD A
Sbjct: 27 VSTGTTIMAVEFDGGVVIGADSRTTTGAYIANRVTDKLTPVHDRIFCCRSGSAADTQAVA 86
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPD-SGEVFLS 121
+ + + A + + P T A + Y + L I+AG+ P G+V++
Sbjct: 87 DAVAYQLAFHSVELEEPPRVRTAARLFQQSCY--RYREELSAGIIVAGWDPRRGGQVYV- 143
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
+ M G R+ F GGS + I G ++ +QPG+S Q E ++ + A RD SG
Sbjct: 144 -VPMGGLLLRQP-FAVGGSGSSYIYGFLDATFQPGMSRSQCQEFVARALALAMVRDGSSG 201
>gi|225711612|gb|ACO11652.1| Proteasome subunit beta type-1 precursor [Caligus rogercresseyi]
Length = 238
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 86/211 (40%), Gaps = 14/211 (6%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG V +AG + I D L ++ K+ ++ L + G D + F
Sbjct: 32 DNGGTTVGIAGSDFVVIASDTRLASSYDILSRNVPKIFELGSGCVLGSCGCWCDVLTFIR 91
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ +Y + ++ A + S LY R+ P +I+ ++AG + G+ + T
Sbjct: 92 VAESKLKDYHYTHGKELNTPALAQMLSNTLYRRRFF-PYYIHNVLAGL-DEKGQGVIYTY 149
Query: 124 DMAG-CETRKTDFVAGGSAQNMIMGIGESFWQ---------PGLSPEQLFEVCSQVVIQA 173
D G CE K GG++ +I I ++ + LS ++ + I A
Sbjct: 150 DPVGHCE--KVKMSCGGTSMELIQPILDNIVEKKNMTNGTMKDLSIDETVNIIHDCFISA 207
Query: 174 CERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ER ++G G ++ + + + + R D
Sbjct: 208 AERQIQTGDGIMFKIITKEGIETKSVGLRRD 238
>gi|448652124|ref|ZP_21681137.1| proteasome subunit alpha [Haloarcula californiae ATCC 33799]
gi|445769527|gb|EMA20601.1| proteasome subunit alpha [Haloarcula californiae ATCC 33799]
Length = 230
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 77/193 (39%), Gaps = 9/193 (4%)
Query: 6 GGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
G V ++ +N I D + G F + KV Q+ P + G F
Sbjct: 35 GTTTVGISTENGVIIATDRRASLGGRFVSNKQVQKVEQIHPTAAMTLVGSVGGAQSFIRS 94
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLF-INPIIAGFYPDSGEVFLSTL 123
+ Y P+S A +A +AR P F INPI+ G + V+ ++
Sbjct: 95 LRAEADLYEVRRDEPLSIHALATLAGN--FARG--GPYFAINPIVGGVDEEGSHVY--SV 148
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWG 183
D AG + D+ GS + G E + G+S + ++ + V A ERDT SG G
Sbjct: 149 DPAGG-VLEDDYTVTGSGTMVATGTIEGQYDHGMSLSEARDLAIRAVNAAAERDTGSGNG 207
Query: 184 ATVYVVEPDKVTI 196
+ + + V I
Sbjct: 208 VVLAEITDEGVEI 220
>gi|428182497|gb|EKX51358.1| 20S proteasome subunit beta type 1 [Guillardia theta CCMP2712]
Length = 230
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/210 (20%), Positives = 86/210 (40%), Gaps = 12/210 (5%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
N+GG +A+AG + I D L G ++ KV Q++ + + G AD + +
Sbjct: 24 NNGGTCLALAGADFCIIAADSRLSLGYSILSRNTPKVAQLTTKTCIASSGCNADMVTLQK 83
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ + Y+ +S A + + LY R+ P + I+ G +GE + +
Sbjct: 84 YLKFKIQMYLHQHGKEMSTPAVAQMLATTLYHRRFF-PYYTFNIVGGL-DQNGEGCVFSY 141
Query: 124 DMAGCETRKTDFVAGGSAQNMI-------MGIGESFWQPGL--SPEQLFEVCSQVVIQAC 174
D GC R + GS +I + + +P + S ++ E+ + A
Sbjct: 142 DAIGCFER-LKYTVSGSGHALIEPFLDNLVAYKNTDNKPTIERSCDETLELVKDIFSSAG 200
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G +Y+++ + + + D
Sbjct: 201 ERDIYTGDFVDIYIIDKNGTRYEQFPLKKD 230
>gi|426383645|ref|XP_004058389.1| PREDICTED: proteasome subunit beta type-6 isoform 1 [Gorilla
gorilla gorilla]
gi|426383647|ref|XP_004058390.1| PREDICTED: proteasome subunit beta type-6 isoform 2 [Gorilla
gorilla gorilla]
Length = 239
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 78/180 (43%), Gaps = 6/180 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ +G D G + +K+ + ++ G AD A
Sbjct: 31 VSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVA 90
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSGEVFLS 121
+ +T + + P P A + ++ + L IIAG+ P + G+V+
Sbjct: 91 DAVTYQLGFHSIELNEP--PLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVY-- 146
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
++ M G R++ F GGS + I G ++ ++ G++ E+ + + + A ERD SG
Sbjct: 147 SVPMGGMMVRQS-FAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSG 205
>gi|240103778|ref|YP_002960087.1| peptidase T1A, 20S proteasome beta-subunit (psmB) [Thermococcus
gammatolerans EJ3]
gi|302595756|sp|C5A7L1.1|PSB1_THEGJ RecName: Full=Proteasome subunit beta 1; AltName: Full=20S
proteasome beta subunit 1; AltName: Full=Proteasome core
protein PsmB 1; Flags: Precursor
gi|239911332|gb|ACS34223.1| Peptidase T1A, 20S proteasome beta-subunit (psmB) [Thermococcus
gammatolerans EJ3]
Length = 201
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 76/188 (40%), Gaps = 7/188 (3%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G V + ++ + D G+ ++ KV Q+ HL + GL D + +
Sbjct: 10 GTTTVGVVCRDGVVLAADRRATLGNMVTSKEVTKVFQIDDHLAIAGAGLVGDILSLVRLL 69
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELY-ARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
Y A +S A + S L+ +R L P F +I G+ L ++D
Sbjct: 70 RAEAKLYRAKVGREMSVKALATLVSNVLHGSRHL--PYFAWFLIGGYDVKP---RLYSID 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
AG T + F+A GS + + E + G+ ++ ++ + V A RD +G G
Sbjct: 125 AAGGVTEER-FIAAGSGMEFALALLEENFSDGMGLDEGIDLAVRAVKAAIRRDVYTGEGV 183
Query: 185 TVYVVEPD 192
TV + +
Sbjct: 184 TVVAITKE 191
>gi|242796933|ref|XP_002482907.1| proteasome component Pre3, putative [Talaromyces stipitatus ATCC
10500]
gi|218719495|gb|EED18915.1| proteasome component Pre3, putative [Talaromyces stipitatus ATCC
10500]
Length = 231
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 80/198 (40%), Gaps = 7/198 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
+N G +I+A+ K+ +G D G + +K+ Q+ ++ G AD A
Sbjct: 26 VNLGTSIMAINFKDGVILGADSRTTTGAYIANRVTDKLTQVHDTIWCCRSGSAADTQAVA 85
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGF-YPDSGEVFLS 121
+ ++ Y P S T AA+ Y K L IIAG+ G+V+
Sbjct: 86 DIVSYHLNMYGIVNNEPPSTQTAAALFQELCYDNK--DQLSAGIIIAGYDRRHGGQVYSI 143
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
L G K + GGS I G ++ W+ G++ E+ + +A + D SG
Sbjct: 144 PL---GGSLHKQAYAIGGSGSTYIYGYCDANWKEGMTEEEGVNFVKSALSEAIKWDGSSG 200
Query: 182 WGATVYVVEPDKVTIRKI 199
G VV K +R +
Sbjct: 201 -GVIRLVVLTAKGAVRHL 217
>gi|390939089|ref|YP_006402827.1| Proteasome endopeptidase complex [Desulfurococcus fermentans DSM
16532]
gi|390192196|gb|AFL67252.1| Proteasome endopeptidase complex [Desulfurococcus fermentans DSM
16532]
Length = 207
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 67/159 (42%), Gaps = 13/159 (8%)
Query: 38 NKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQS-----PISPDTFAAIASWE 92
K+ +++ + L GL AD E A Y+A E PI A+ S
Sbjct: 40 KKISKITDYAALTISGLVADAQYIVE-----NARYIAREYEIEIGGPIPIKALASRISLI 94
Query: 93 LYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESF 152
L SP + ++ G DS L +D+ G TR+ ++A GS + GI E
Sbjct: 95 LSVYLRYSPFIVQLLLGG--RDSTGASLYYMDLYGSVTRE-KYMATGSGSPVAFGILEKN 151
Query: 153 WQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEP 191
++ LS E+ ++ V A RD SG G + V+ P
Sbjct: 152 YRSDLSLEEAKKLAFNAVSSAIMRDGFSGEGVDIVVIGP 190
>gi|331231656|ref|XP_003328491.1| 20S proteasome subunit beta 1 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|309307481|gb|EFP84072.1| 20S proteasome subunit beta 1 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 219
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 76/192 (39%), Gaps = 3/192 (1%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
LN G +I+A+A + IG D G + +K+ + +Y G AD A
Sbjct: 15 LNLGTSIMAVAFEGGVVIGADSRTTSGSYIANRVTDKLTHIHDRVYCCRSGSAADTQAVA 74
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLST 122
+ + L Y A S T I Y+ K L I+AG+ + + +
Sbjct: 75 DYVHLYCQMYTAQHGHAPSVHTVGTIFEQICYSNK--DNLSAGIIVAGWDAQTKKGSVYN 132
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGW 182
+ + G ++ + GGS I G +S ++ G + E+ + A RD SG
Sbjct: 133 IPLGGGLFQQP-WAIGGSGSTYIYGYCDSNYRAGWTKEETVGFVKNALALAMSRDGSSGG 191
Query: 183 GATVYVVEPDKV 194
+ ++ DKV
Sbjct: 192 TIRMAIITEDKV 203
>gi|286248|dbj|BAA01586.1| proteasome subunit R-DELTA [Rattus sp.]
Length = 202
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 72/163 (44%), Gaps = 6/163 (3%)
Query: 20 IGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSP 79
+G D G + +K+ + H++ G AD A+ +T + + P
Sbjct: 11 LGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVADAVTYQLGFHSIELNEP 70
Query: 80 ISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSGEVFLSTLDMAGCETRKTDFVAG 138
P A + ++ + L IIAG+ P + G+V+ ++ M G R++ F G
Sbjct: 71 --PLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVY--SVPMGGMMVRQS-FAIG 125
Query: 139 GSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
GS + I G ++ ++ G++ ++ + + + A ERD SG
Sbjct: 126 GSGSSYIYGYVDATYREGMTKDECLQFTANALALAMERDGSSG 168
>gi|322368956|ref|ZP_08043523.1| proteasome endopeptidase complex, beta subunit [Haladaptatus
paucihalophilus DX253]
gi|320551687|gb|EFW93334.1| proteasome endopeptidase complex, beta subunit [Haladaptatus
paucihalophilus DX253]
Length = 205
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 62/169 (36%), Gaps = 6/169 (3%)
Query: 29 GDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAI 88
G F + KV + P L G D + + + Y PI + +
Sbjct: 33 GRFVTNKAVQKVQGVHPTAALTMAGGVGDLQSYIRTLRAEASLYETRRGEPIDMAALSTL 92
Query: 89 ASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGI 148
A L P + G V+ LD AG + D+ A GS + G+
Sbjct: 93 AGTLLREGPYRGA---QPTLGGVDRTGPHVY--DLDTAGG-VMEADYHASGSGMQLAYGV 146
Query: 149 GESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIR 197
E ++P L + V + + A ERDT SG G TV V D V IR
Sbjct: 147 LEREFEPNLPTDVARRVAANAIESAIERDTASGNGLTVATVSADGVEIR 195
>gi|218884599|ref|YP_002428981.1| Proteasome subunit [Desulfurococcus kamchatkensis 1221n]
gi|302595713|sp|B8D683.1|PSB2_DESK1 RecName: Full=Proteasome subunit beta 2; AltName: Full=20S
proteasome beta subunit 2; AltName: Full=Proteasome core
protein PsmB 2; Flags: Precursor
gi|218766215|gb|ACL11614.1| Proteasome subunit [Desulfurococcus kamchatkensis 1221n]
Length = 206
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 67/159 (42%), Gaps = 13/159 (8%)
Query: 38 NKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQS-----PISPDTFAAIASWE 92
K+ +++ + L GL AD E A Y+A E PI A+ S
Sbjct: 39 KKISKITDYAALTISGLVADAQYIVE-----NARYIAREYEIEMGGPIPIKALASRISLI 93
Query: 93 LYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESF 152
L SP + ++ G DS L +D+ G TR+ ++A GS + GI E
Sbjct: 94 LSVYLRYSPFIVQLLLGG--RDSTGASLYYMDLYGSVTRE-KYMATGSGSPVAFGILEKN 150
Query: 153 WQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEP 191
++ LS E+ ++ V A RD SG G + V+ P
Sbjct: 151 YRSDLSLEEAKKLAFNAVSSAIMRDGFSGEGVDIVVIGP 189
>gi|984938|gb|AAA75375.1| delta proteasome subunit [Mus musculus]
Length = 202
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 72/163 (44%), Gaps = 6/163 (3%)
Query: 20 IGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSP 79
+G D G + +K+ + H++ G AD A+ +T + + P
Sbjct: 11 LGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVADAVTYQLGFHSIELNEP 70
Query: 80 ISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSGEVFLSTLDMAGCETRKTDFVAG 138
P A + ++ + L IIAG+ P + G+V+ ++ M G R++ F G
Sbjct: 71 --PLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVY--SVPMGGMMVRQS-FAIG 125
Query: 139 GSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
GS + I G ++ ++ G++ ++ + + + A ERD SG
Sbjct: 126 GSGSSYIYGYVDATYREGMTKDECLQFTANALALAMERDGSSG 168
>gi|336254146|ref|YP_004597253.1| 20S proteasome subunits A and B [Halopiger xanaduensis SH-6]
gi|335338135|gb|AEH37374.1| 20S proteasome A and B subunits [Halopiger xanaduensis SH-6]
Length = 258
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 75/194 (38%), Gaps = 8/194 (4%)
Query: 6 GGAIVAMAGKNCFAIGVD-HLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
G V +AG + + D + G F + K+ + + G +D F
Sbjct: 47 GTTTVGLAGTDGAVLAADARASLGGQFVTNKTARKIDPVDDRTAVAFSGSVSDAQSFVRH 106
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ + Y S +T A +A +L R P I ++ D V+
Sbjct: 107 LRAELSQYDLERDGRASVETAATVA-GDLVRR---GPYRILDLVLAGVDDEPAVYQIG-- 160
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G + + A GS + G E+ ++PG S +L + ++ V A ERDT SG G
Sbjct: 161 -GGGGVMRAPYAASGSGMQLAYGALEAAYEPGRSVAELRPIAARAVRSAAERDTASGDGM 219
Query: 185 TVYVVEPDKVTIRK 198
T+ + D + I +
Sbjct: 220 TIATITDDDLAIER 233
>gi|431893962|gb|ELK03768.1| Proteasome subunit beta type-6 [Pteropus alecto]
Length = 239
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 78/180 (43%), Gaps = 6/180 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ +G D G + +K+ + ++ G AD A
Sbjct: 31 VSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVA 90
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSGEVFLS 121
+ +T + + P P A + ++ + L IIAG+ P + G+V+
Sbjct: 91 DAVTYQLGFHSIELNEP--PLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVY-- 146
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
++ M G R++ F GGS + I G ++ ++ G++ E+ + + + A ERD SG
Sbjct: 147 SVPMGGMMVRQS-FAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSG 205
>gi|340507845|gb|EGR33723.1| proteasome subunit beta type 1, putative [Ichthyophthirius
multifiliis]
Length = 203
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 72/164 (43%), Gaps = 6/164 (3%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+ G + A+ GK + D L QG I+ +K+ ++S ++YL G+ AD + +++
Sbjct: 41 NAGTVCAIGGKGFVIVAGDTRLSQGYSIISRENSKLCKLSDNVYLATSGMYADFVALSKQ 100
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPL--FINPIIAGFYPDSGEVFLST 122
+ R Y + Q S + + S LY ++ + FIN I F+P L+
Sbjct: 101 LQSRLQMYQYNNQKQASMKAISTLLSRTLYYKRYIYFIINFINKYIYRFFPYYTFNLLAG 160
Query: 123 LDMAGC-ETRKTDFVAGGS-AQNMIMGIGESFWQPGLSPEQLFE 164
D G + D V G Q ++G G P +Q+FE
Sbjct: 161 FDNQGNGQVIGYDAVGSGDFKQYAVLGSGAQLIVPIF--DQIFE 202
>gi|36059|emb|CAA44603.1| RING12 [Homo sapiens]
gi|228223|prf||1718344A RING12 gene
Length = 219
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 77/187 (41%), Gaps = 7/187 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ +G D + G+ + +K+ + H+Y G AD A
Sbjct: 17 VHTGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHEHIYCALSGSAADAQAVA 76
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLST 122
+ + + + P P AA + K L + ++AG+ G T
Sbjct: 77 DMAAYQLELHGIELEEP--PLVLAAANVVRNISYKYREDLSAHLMVAGWDQREGGQVYGT 134
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGW 182
L G TR+ F GGS I G ++ ++PG+SPE+ + + A RD S
Sbjct: 135 L--GGMLTRQP-FAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTTDAIALAMSRDGSS-- 189
Query: 183 GATVYVV 189
G +Y+V
Sbjct: 190 GGVIYLV 196
>gi|159041041|ref|YP_001540293.1| proteasome endopeptidase complex protein [Caldivirga maquilingensis
IC-167]
gi|302595700|sp|A8MBW0.1|PSB1_CALMQ RecName: Full=Proteasome subunit beta 1; AltName: Full=20S
proteasome beta subunit 1; AltName: Full=Proteasome core
protein PsmB 1; Flags: Precursor
gi|157919876|gb|ABW01303.1| Proteasome endopeptidase complex [Caldivirga maquilingensis IC-167]
Length = 206
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 72/176 (40%), Gaps = 4/176 (2%)
Query: 15 KNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVA 74
K + D + G + K+ ++ H G AD ++T NY
Sbjct: 23 KEGVVLATDRRVTAGYYIAHRKGRKIWKIDNHAAATMSGAVADVQMILNELTHLAMNYRI 82
Query: 75 SEQSPISPDTFAAIASWEL-YARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKT 133
+ Q+P+ T A AS + Y+R + ++I +I G + L +D G TR+
Sbjct: 83 THQAPVPIKTLANYASVVMFYSRPM---IYIAHMIIGGVDNEEGPVLYAVDWYGSFTREE 139
Query: 134 DFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVV 189
F++ GS G+ E ++ +S + ++ ++ V A D SG G V +
Sbjct: 140 RFMSTGSGSPTAFGVLEDGYRDDMSLDDAVKLATRAVRAAMLHDPGSGEGVDVITI 195
>gi|448382258|ref|ZP_21562014.1| proteasome endopeptidase complex, beta subunit [Haloterrigena
thermotolerans DSM 11522]
gi|445662091|gb|ELZ14865.1| proteasome endopeptidase complex, beta subunit [Haloterrigena
thermotolerans DSM 11522]
Length = 243
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 66/156 (42%), Gaps = 8/156 (5%)
Query: 29 GDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAI 88
G F + KV Q+ P L G F + Y A +S + A +
Sbjct: 72 GRFVSNKNVQKVEQIHPTAALTLVGSVGGAQSFISTLRAEVNLYEARRGENMSIEALATL 131
Query: 89 ASWELYARKLTSPLF-INPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMG 147
A +AR P F I+PI+ G + V+ ++D AG + D+ GS + G
Sbjct: 132 AGN--FARG--GPFFAIHPILGGVDDEGSHVY--SIDPAGG-VMEDDYTVTGSGMQLAYG 184
Query: 148 IGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWG 183
E ++P +S E+ V ++ + A ERDT SG G
Sbjct: 185 HLEQAYEPDMSTEEAKTVAARGIKSAVERDTGSGNG 220
>gi|401827855|ref|XP_003888220.1| proteasome beta type-6 subunit [Encephalitozoon hellem ATCC 50504]
gi|392999420|gb|AFM99239.1| proteasome beta type-6 subunit [Encephalitozoon hellem ATCC 50504]
Length = 202
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 74/189 (39%), Gaps = 7/189 (3%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G I+A+ + IG D G + + +K+ Q++ +++ G AD +E +
Sbjct: 9 GTTIIAIKYDDGVLIGADSRTSMGTYIPSRVTDKLTQITGKIFVCRSGSAADTQTISEYL 68
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
+ Y E + A +AS +Y +P + +I Y + +F +L
Sbjct: 69 KMYLKMYSQLENAAPLVHRAATLASKIIYE----NPSLLAGLIVAGYDEKPRIFNISL-- 122
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
G + D+ GGS I + W+ G+S E+ V A RD SG
Sbjct: 123 -GGTLMECDWTIGGSGSAFIYSYCDMNWRSGMSLEEGIRFIKDAVTCAISRDNASGGCIR 181
Query: 186 VYVVEPDKV 194
+ + D V
Sbjct: 182 MSAITRDGV 190
>gi|121706829|ref|XP_001271642.1| proteasome component Pre1, putative [Aspergillus clavatus NRRL 1]
gi|119399790|gb|EAW10216.1| proteasome component Pre1, putative [Aspergillus clavatus NRRL 1]
Length = 182
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 71/173 (41%), Gaps = 10/173 (5%)
Query: 27 VQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFA 86
++G + ++K Q+S H + G D +QFAE + A Y + + P A
Sbjct: 1 MRGPTILKAEDDKTRQLSQHTLMAYSGEAGDTVQFAEYIQANIALYTMRNDTELRPKAVA 60
Query: 87 AIASWELYARKLTS--PLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNM 144
EL AR L S P +N ++ G + E L +D + A G AQ
Sbjct: 61 NFVRGEL-ARSLRSRNPYTVNLLLGGVDTITQEPHLYWIDYLSA-LAPVPYAAHGYAQYY 118
Query: 145 IMGIGESFWQPGLSPEQ---LFEVCSQVVIQACERDTKSGWGATVYVVEPDKV 194
+ I + P +S EQ L ++C+ + + D K G V VV D V
Sbjct: 119 CLSILDKHHHPDISLEQGMKLLQLCTDELKRRLPIDYK---GVLVKVVTKDGV 168
>gi|148678311|gb|EDL10258.1| proteosome (prosome, macropain) subunit, beta type 9 (large
multifunctional peptidase 2), isoform CRA_b [Mus
musculus]
Length = 219
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 81/188 (43%), Gaps = 9/188 (4%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ +G D + G + +K+ + H++ G AD A
Sbjct: 17 VHTGTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQHIFCALSGSAADAQAIA 76
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGF-YPDSGEVFLS 121
+ + + + P P AA + + K L + I+AG+ + G+V+ +
Sbjct: 77 DMAAYQLELHGLELEEP--PLVLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYGT 134
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
M G R+ F GGS + I G ++ ++PG++PE+ + + A RD S
Sbjct: 135 ---MGGMLIRQP-FTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSS- 189
Query: 182 WGATVYVV 189
G +Y+V
Sbjct: 190 -GGVIYLV 196
>gi|393233954|gb|EJD41521.1| proteasome component Pre1 [Auricularia delicata TFB-10046 SS5]
Length = 194
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 72/185 (38%), Gaps = 2/185 (1%)
Query: 11 AMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTA 70
A+ GK I D + + E+KV +SPHL + G D +QFAE +
Sbjct: 6 ALTGKGYVLIAADMTSARSIVKMKHDEDKVKPLSPHLLMTYSGEPGDTVQFAEYVERNLR 65
Query: 71 NYVASEQSPISPDTFAAIASWELY-ARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCE 129
Y + P + A+ L + + SP +N ++ G+ + L +D G
Sbjct: 66 LYQIRNHHALRPHSAASWIRRTLADSLRSRSPYSVNLLVGGYDTSEHQPHLYWIDYLGTM 125
Query: 130 TRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVV 189
F A G + + + + P S E+ EV + + + +R V VV
Sbjct: 126 A-TVPFAAHGYGSYFALSLLDRYHNPDASLEEGIEVLKRCIDEVQKRLIVGLGKFKVRVV 184
Query: 190 EPDKV 194
+ D V
Sbjct: 185 DKDGV 189
>gi|408388365|gb|EKJ68051.1| hypothetical protein FPSE_11862 [Fusarium pseudograminearum CS3096]
Length = 213
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 77/193 (39%), Gaps = 4/193 (2%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
N ++ + GK+ I ++G + ++K ++ H L G D +QFAE
Sbjct: 9 NMADILLGITGKDFTIIAASKAAMRGATILKTTDDKTRALNKHTLLAFSGEAGDTVQFAE 68
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTS--PLFINPIIAGFYPDSGEVFLS 121
+ Y +S +SP A EL A L S P +N ++ G P +G+ L
Sbjct: 69 YIQRNAQLYSMRNESDLSPSALAHFVRGEL-ATSLRSRKPYNVNLLMGGVDPITGKPSLY 127
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
LD + + A G AQ + I + P ++ Q ++ + + + R
Sbjct: 128 WLDYLA-SLAEVPYAAHGYAQYYCLSILDKHHHPDITLHQGIKILTMCIDELKRRLPIDF 186
Query: 182 WGATVYVVEPDKV 194
G V V+ D +
Sbjct: 187 KGMVVKAVKADGI 199
>gi|300711728|ref|YP_003737542.1| proteasome subunit beta [Halalkalicoccus jeotgali B3]
gi|448296163|ref|ZP_21486224.1| proteasome subunit beta [Halalkalicoccus jeotgali B3]
gi|299125411|gb|ADJ15750.1| proteasome beta subunit [Halalkalicoccus jeotgali B3]
gi|445582886|gb|ELY37226.1| proteasome subunit beta [Halalkalicoccus jeotgali B3]
Length = 247
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 77/196 (39%), Gaps = 6/196 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
L G V + ++ + D G+ ++ KV + P L G +
Sbjct: 44 LKTGTTTVGLRAEDGVVLATDMRASLGNMVSSKTVQKVEDVHPTGALTIAGSVSAAQSLI 103
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLST 122
+ Y A + +S + + S L + + P++ G + ++ +
Sbjct: 104 RTLRAEVNLYDARQGEDMSMTALSTLTSNLLRSGGF---FIVVPVLGGVDDEGPHIY--S 158
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGW 182
+D G T +T + GS +G+ E ++ GLS E+ +V + V A ERDT SG
Sbjct: 159 MDALGGTTEET-YAVSGSGSQFALGVLEQHYEEGLSVEEARDVAIRSVGSAVERDTASGN 217
Query: 183 GATVYVVEPDKVTIRK 198
G + V + V I +
Sbjct: 218 GINIATVTEEGVDIER 233
>gi|114326385|ref|NP_001041550.1| proteasome subunit beta type-8 precursor [Canis lupus familiaris]
gi|62900679|sp|Q5W416.1|PSB8_CANFA RecName: Full=Proteasome subunit beta type-8; AltName:
Full=Proteasome subunit beta-5i; Flags: Precursor
gi|55162804|emb|CAH63452.1| proteasome (prosome, macropain) subunit, beta type, 8 (large
multifunctional protease 7) [Canis lupus familiaris]
Length = 276
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 81/188 (43%), Gaps = 6/188 (3%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G +A ++ + VD G++ + NKV +++P L G CA Q+ E++
Sbjct: 72 GTTTLAFKFQHGVIVAVDSRATAGNYISSSRVNKVIEINPSLLGTMSG-CAADCQYWERL 130
Query: 66 TLRTAN-YVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ Y IS + + S +Y + L + +I G+ D L +D
Sbjct: 131 LAKECRLYYLRNGERISVSAASKLLSNMVYQYR-GMDLSMGSMICGW--DKKGPGLYYVD 187
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G F + GS G+ +S +QP LSPE+ +E+ + + A RD+ SG
Sbjct: 188 QNGTRLSGNMF-STGSGSTYAYGVMDSGYQPSLSPEEAYELGRRAITYATHRDSYSGGII 246
Query: 185 TVYVVEPD 192
+Y ++ D
Sbjct: 247 NMYHMKED 254
>gi|195579636|ref|XP_002079667.1| GD21900 [Drosophila simulans]
gi|194191676|gb|EDX05252.1| GD21900 [Drosophila simulans]
Length = 201
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 78/190 (41%), Gaps = 9/190 (4%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
++ + G + + D + + E +NK+H++S L + G D QF E ++
Sbjct: 4 LLGIKGPDFVMLAADTTHARSIIVMKEDQNKIHKVSDSLLISTVGESGDTEQFTEFVSKN 63
Query: 69 TANYVASEQSPISPDTFAAIASWEL--YARKLTSPLFINPIIAGFYPDSGE--VFLSTLD 124
A Y +SP A L Y R T P + +AG+ P++G F+ L
Sbjct: 64 IALYKMRNGYDLSPQASAHFTRKNLAEYLRSRT-PYQVFMFVAGYDPNAGPELTFIDYL- 121
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
++ G I + +W P ++ ++ ++V + + + +R +
Sbjct: 122 ---ANALPVNYAGHGYGAIFASSIYDRYWHPNITQDEAYDVFKKCIAEIQKRLVVNLKNF 178
Query: 185 TVYVVEPDKV 194
TV VV+ D V
Sbjct: 179 TVAVVDKDGV 188
>gi|156365620|ref|XP_001626742.1| predicted protein [Nematostella vectensis]
gi|156213630|gb|EDO34642.1| predicted protein [Nematostella vectensis]
Length = 229
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 89/210 (42%), Gaps = 14/210 (6%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN-KVHQMSPHLYLINPGLCADGMQFAE 63
+GG ++A++G++ I D L QG F I ++ KV++++ L G D + +
Sbjct: 24 NGGTVLAISGEDFAVIASDTRLSQG-FQIHTRDSPKVYKLTGSTVLGCSGFHGDCLTLTK 82
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
++ R Y +S A + S LY R+ P + I+AG G+ + +
Sbjct: 83 HISARLQMYEHDHGKAMSCTAIAQMLSTMLYYRRFF-PYYTYNILAGL-DSEGKGCVFSF 140
Query: 124 DMAGCETRKTDFVAGGSAQNMIM-----GIG----ESFWQPGLSPEQLFEVCSQVVIQAC 174
D G R+ + AGGSA ++ IG E L+ ++ + V A
Sbjct: 141 DPVGSYEREV-YRAGGSASALLQPLLDNQIGFKNQEGVPHTPLTRDKAVALVKDVFTSAA 199
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G + VV + V+ R D
Sbjct: 200 ERDIYTGDAVIINVVSSEGVSEEAFPLRRD 229
>gi|352682834|ref|YP_004893358.1| proteasome subunit beta [Thermoproteus tenax Kra 1]
gi|350275633|emb|CCC82280.1| proteasome, beta subunit [Thermoproteus tenax Kra 1]
Length = 204
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 83/189 (43%), Gaps = 6/189 (3%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
N G V + K+ + + + G ++++ KV ++ + + + G+ AD A+
Sbjct: 6 NVGATAVGIRAKDGVVLAAEKRITYGFYSLSSSGKKVFIVNDRMAIASAGVIADMQTLAK 65
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSG-EVFLST 122
+ + Y + S A + S ++ R+ FI ++ G Y + G VF+
Sbjct: 66 ILRVNAKMYELDAKRKPSVAAMAKLLSIIMFNRRWMP--FIAEVLVGGYDEEGPHVFV-- 121
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGW 182
LD G + D+ A G+ M +GI +S ++ + + ++ + A ERD SG
Sbjct: 122 LDPVGSLI-EDDYAALGTGAKMAIGILDSGYKKDIDVVEARKLAINAIRAALERDPVSGG 180
Query: 183 GATVYVVEP 191
G + ++ P
Sbjct: 181 GIDLVIITP 189
>gi|348576420|ref|XP_003473985.1| PREDICTED: proteasome subunit beta type-9-like [Cavia porcellus]
Length = 219
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 81/188 (43%), Gaps = 9/188 (4%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ +G D + G + +K+ + H+Y G AD
Sbjct: 17 VHTGTTIMAVEFDGGVVLGSDSRVSAGQAVVNRVFDKLSPLHKHIYCALSGSAADAQAMV 76
Query: 63 EKMTLRTANY-VASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLS 121
+ + + + E+SP+ AA + + K L + I+AG+ +G
Sbjct: 77 DLAAYQLELHGMELEESPL---VLAAANVVKNVSYKYREELSAHLIVAGWDQRAGGQVYG 133
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
T+ G TR+ F+ GGS I G ++ ++PG+SPE+ + + A RD S
Sbjct: 134 TI--GGMLTRQP-FIIGGSGSTYIHGYVDAAYKPGMSPEECRRFTTDAIALAMNRDCSS- 189
Query: 182 WGATVYVV 189
G +Y+V
Sbjct: 190 -GGVIYLV 196
>gi|195344560|ref|XP_002038849.1| GM17161 [Drosophila sechellia]
gi|194133979|gb|EDW55495.1| GM17161 [Drosophila sechellia]
Length = 201
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 78/190 (41%), Gaps = 9/190 (4%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
++ + G + + D + + E +NK+H++S L + G D QF E ++
Sbjct: 4 LLGIKGPDFVMLAADTTHARSIIVMKEDQNKIHKVSDSLLISTVGESGDTEQFTEFVSKN 63
Query: 69 TANYVASEQSPISPDTFAAIASWEL--YARKLTSPLFINPIIAGFYPDSGE--VFLSTLD 124
A Y +SP A L Y R T P + +AG+ P++G F+ L
Sbjct: 64 IALYKMRNGYDLSPHASAHFTRKNLAEYLRSRT-PYQVFMFVAGYDPNAGPELTFIDYL- 121
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
++ G I + +W P ++ ++ ++V + + + +R +
Sbjct: 122 ---ANALPVNYAGHGYGAIFASSIYDRYWHPNITQDEAYDVFKKCIAEIQKRLVVNLKNF 178
Query: 185 TVYVVEPDKV 194
TV VV+ D V
Sbjct: 179 TVAVVDKDGV 188
>gi|238578402|ref|XP_002388706.1| hypothetical protein MPER_12245 [Moniliophthora perniciosa FA553]
gi|215450229|gb|EEB89636.1| hypothetical protein MPER_12245 [Moniliophthora perniciosa FA553]
Length = 165
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 5/142 (3%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG I+A+ G N I D +G Y KV +++ L G ADG F +K
Sbjct: 21 NGGTILAIGGANFSVIAGDTRQSEGYSIQTRYAPKVFRLTDKAVLAVNGFAADGNMFVKK 80
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPD-SGEVFLSTL 123
+ R Y + + A + LYAR+ P ++ I+ G D SG V+ +
Sbjct: 81 VRQRLEWYRHAHAKDMPLRAIARLIQTMLYARRFF-PYYVYNILGGIEEDGSGAVY--SF 137
Query: 124 DMAGCETRKTDFVAGGSAQNMI 145
D G R++ A G+AQ+++
Sbjct: 138 DPVGSYERES-CRAAGAAQSLV 158
>gi|121710184|ref|XP_001272708.1| proteasome component Pup1, putative [Aspergillus clavatus NRRL 1]
gi|119400858|gb|EAW11282.1| proteasome component Pup1, putative [Aspergillus clavatus NRRL 1]
Length = 272
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 72/190 (37%), Gaps = 5/190 (2%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G IV N I D G + K+H ++P ++ G AD +
Sbjct: 29 GTTIVGCIFDNGVVIAADTRATSGPIVADKNCEKLHYIAPKIWCAGAGTAADTEFTTALI 88
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
+ + S P P + + + + + ++AG P V L T+
Sbjct: 89 SSNVELHALSTGRP--PRVITCMTMLKQHLFRYQGHIGAYLVVAGVDPTG--VGLFTVHA 144
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
G T K +V GS M + ES W+P L+ E+ +CS+ + D SG
Sbjct: 145 HG-STDKLPYVTMGSGSLAAMSVFESMWKPNLNREEAVALCSEAIKAGIFNDLGSGSNVD 203
Query: 186 VYVVEPDKVT 195
V V+E DK T
Sbjct: 204 VCVIENDKPT 213
>gi|147899680|ref|NP_001089683.1| uncharacterized protein LOC734745 [Xenopus laevis]
gi|76780130|gb|AAI06328.1| MGC130855 protein [Xenopus laevis]
Length = 247
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 76/180 (42%), Gaps = 6/180 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ IG D G + +K+ + ++ G AD A
Sbjct: 30 VSTGTTIMAVEFDGGVVIGADSRTTTGAYIANRVTDKLTPVHDRIFCCRSGSAADTQAIA 89
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGF-YPDSGEVFLS 121
+ +T + + + P P A + ++ + L I+AG+ G+V+
Sbjct: 90 DAVTYQLGFHSIELEGP--PLVHTAASLFKEMCYRYREDLMAGIIVAGWDKRRGGQVY-- 145
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
T+ M G + F GGS + I G +S ++PG+S E+ + + + A ERD SG
Sbjct: 146 TVPMGGMLVHQ-QFSIGGSGSSYIYGFVDSTYRPGMSKEECLKFTANALALAMERDGSSG 204
>gi|15530232|gb|AAH13897.1| Proteasome (prosome, macropain) subunit, beta type 6 [Mus musculus]
Length = 202
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 72/163 (44%), Gaps = 6/163 (3%)
Query: 20 IGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSP 79
+G D G + +K+ + H++ G AD A+ +T + + P
Sbjct: 11 LGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVADAVTYQLGFHSIELNEP 70
Query: 80 ISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSGEVFLSTLDMAGCETRKTDFVAG 138
P A + ++ + L IIAG+ P + G+V+ ++ M G R++ F G
Sbjct: 71 --PLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVY--SVPMGGMMVRQS-FAIG 125
Query: 139 GSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
GS + I G ++ ++ G++ ++ + + + A ERD SG
Sbjct: 126 GSRSSYIYGYVDATYREGMTKDECLQFTANALALAMERDGSSG 168
>gi|219115083|ref|XP_002178337.1| proteasome beta subunit [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410072|gb|EEC50002.1| proteasome beta subunit [Phaeodactylum tricornutum CCAP 1055/1]
Length = 225
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 67/180 (37%), Gaps = 6/180 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ +G D + G + +K+ QMS H++ G AD
Sbjct: 21 VSTGTTIMAIPTAEGVVLGADSRVSTGTYVANRVSDKIAQMSDHIFACRSGSAADTQALT 80
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSGEVFLS 121
+ + P T A + Y K L I+AG+ P D G V+
Sbjct: 81 DYVKFYLQQLTVETGRPPRVKTAAHLMQRLCYENK--DNLMAGVIVAGWDPVDGGSVYSI 138
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
L G K F GS I G+ +S + LS + + + + A RD SG
Sbjct: 139 PL---GGTCLKVPFALSGSGSTYIYGLVDSEYNDSLSLQDARTLVKKAISHAMARDGSSG 195
>gi|426195798|gb|EKV45727.1| 20S proteasome subunit [Agaricus bisporus var. bisporus H97]
Length = 256
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 83/201 (41%), Gaps = 22/201 (10%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG I+A+AG + I D +G Y KV +++ L G ADG F +K
Sbjct: 23 NGGTILAIAGADFSVIAGDTRQSEGYSIQTRYAPKVFRLTDKAVLAVNGFAADGNMFVKK 82
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPD-SGEVFLSTL 123
+ R Y + + A + LY+R+ P ++ I+ G D +G V+ +
Sbjct: 83 VRQRLEWYRHAHAKDMPIRAIARLIQTMLYSRRFF-PYYVYNILGGIEEDGTGAVY--SF 139
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGI--------------GESFWQPG-LSPEQLFEVCSQ 168
D G R+ A G+AQ+++ G SF PG LS + +
Sbjct: 140 DPVGSYEREA-CRAAGAAQSLVQPFLDNQIYFKNQTPAPGTSF--PGHLSLSTVLSLVID 196
Query: 169 VVIQACERDTKSGWGATVYVV 189
A ER + G G +Y+V
Sbjct: 197 SFTSATERHIEVGDGLEMYIV 217
>gi|417397665|gb|JAA45866.1| Putative proteasome beta 6 subunit [Desmodus rotundus]
Length = 239
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 78/180 (43%), Gaps = 6/180 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ +G D G + +K+ + ++ G AD A
Sbjct: 31 VSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVA 90
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSGEVFLS 121
+ +T + + P P A + ++ + L IIAG+ P + G+V+
Sbjct: 91 DAVTYQLGFHSIELNEP--PLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVY-- 146
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
++ M G R++ F GGS + I G ++ ++ G++ E+ + + + A ERD SG
Sbjct: 147 SVPMGGMMVRQS-FAIGGSGSSYIYGYVDATYREGMAKEECLQFTANALALAMERDGSSG 205
>gi|449704101|gb|EMD44406.1| proteasome beta subunit, putative [Entamoeba histolytica KU27]
Length = 225
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/192 (18%), Positives = 79/192 (41%), Gaps = 8/192 (4%)
Query: 7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMT 66
G V + G++ I D + + + ++K++ ++ G+ AD + +++
Sbjct: 28 GTCVVIKGEDFVVIASDTRMSRDYMILTRNDSKIYPLTSKCVFTGSGMRADIKELTDQIK 87
Query: 67 LRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMA 126
NY +S ++ A + S LY+ + P + ++AG G+ D
Sbjct: 88 AHIKNYKYENGKEMSTESVAQVLSNTLYSHRFF-PYYSFSLLAGI-NSKGKAVTYNYDAV 145
Query: 127 GC-ETRKTDFVAGGSAQNMIMGIGESFWQPGLSP---EQLFEVCSQVVIQACERDTKSGW 182
G E RK + GS + + + +S + P ++ + V+ ACERD +G
Sbjct: 146 GSFEERK--YSCSGSGEELAYPLLDSLLKDRTEPLGEQEAINIARDVMTSACERDIHTGD 203
Query: 183 GATVYVVEPDKV 194
+ ++ + +
Sbjct: 204 NVEIVILNSNGI 215
>gi|339246829|ref|XP_003375048.1| proteasome subunit beta type-1 [Trichinella spiralis]
gi|316971688|gb|EFV55434.1| proteasome subunit beta type-1 [Trichinella spiralis]
Length = 297
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 85/211 (40%), Gaps = 15/211 (7%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTI-AEYENKVHQMSPHLYLINPGLCADGMQFAE 63
+GG +AGK+ + D L + + KV++++P +Y+ G D +Q +
Sbjct: 91 NGGTCAGIAGKDFVILSGDTRLSASSMVVMSRTAPKVYRLTPKVYMTGTGFQGDMIQLVK 150
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y+ + + A + S LY R+ P ++ II G D G L +
Sbjct: 151 VLRTRIQQYLFTFNEYMDIHAAAQLLSRTLYFRRFF-PYYVGAIIGGIDRD-GRGVLYSY 208
Query: 124 DMAGCETRKTDFVAGGSAQNMI-----MGIG-----ESFWQPGLSPEQLFEVCSQVVIQA 173
D G + + A G +I IG E QP LS E+ ++ I
Sbjct: 209 DPVGT-IEELPYSAQGEGSYLIEPFFDNQIGWKTQPEQTKQP-LSKERAQQLMHDAFIST 266
Query: 174 CERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ER+ +G + V+ D+V + R D
Sbjct: 267 IEREKSTGDAVQMVVLHGDRVEEHILKMRTD 297
>gi|452819220|gb|EME26285.1| 20S proteasome subunit beta 1 [Galdieria sulphuraria]
Length = 227
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 78/196 (39%), Gaps = 6/196 (3%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G I+A+ +G D G + +K+ +S +Y G AD A+ +
Sbjct: 27 GTTIMAVEFDGGVVLGADSRTTTGAYIANRVSDKITPLSERIYCCRSGSAADTQAIADYV 86
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSGEVFLSTLD 124
+ + T A+I Y+ K L I AG+ P G+V+ T+
Sbjct: 87 RYYLSIHQLDLDDLPCVKTAASICRELCYSNK--DRLLAGIICAGWDPLYGGQVY--TIP 142
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ G R+ + GGS I G ++ +Q G+S EQ + + V A RD SG
Sbjct: 143 LGGTMIRQP-YSIGGSGSTYIYGFCDAHFQKGMSREQCIDFTKKAVALAMARDGSSGGVI 201
Query: 185 TVYVVEPDKVTIRKIA 200
+ V+E V IA
Sbjct: 202 RLVVIEKQGVWREMIA 217
>gi|345004933|ref|YP_004807786.1| proteasome endopeptidase complex subunit beta [halophilic archaeon
DL31]
gi|344320559|gb|AEN05413.1| proteasome endopeptidase complex, beta subunit [halophilic archaeon
DL31]
Length = 242
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 65/162 (40%), Gaps = 10/162 (6%)
Query: 39 KVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKL 98
KV Q+ PH L G + E + + + +S + L L
Sbjct: 81 KVEQVHPHGALTIAGSVSAAQNLIETLRAESNLFEVRRGKEMSMQALST-----LTGNLL 135
Query: 99 TSPLF--INPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPG 156
S F ++PI+ G + V+ ++D G T + D+ GS +G+ E +
Sbjct: 136 RSGAFYIVSPILGGVDSEGSHVY--SIDALGGTTEE-DYAVSGSGSQFALGVLEQEYDDD 192
Query: 157 LSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRK 198
L E V ++ + A ERDT SG G + VV + V I K
Sbjct: 193 LDIEGAKTVATKAIKSAMERDTASGNGINIAVVTDEGVEITK 234
>gi|210075667|ref|XP_502489.2| YALI0D06523p [Yarrowia lipolytica]
gi|199425772|emb|CAG80677.2| YALI0D06523p [Yarrowia lipolytica CLIB122]
Length = 248
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 83/201 (41%), Gaps = 14/201 (6%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG ++ +AG + + D G + Y+ KV + ++ + G ADG E
Sbjct: 42 DNGGTVLGIAGDDFALLAGDTRNTTGYSINSRYQPKVFDVGDNILVTANGFSADGDALIE 101
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ Y P+ + A LY ++ P +++ IIAG + G+ + +
Sbjct: 102 NIKQHVELYHYQNNKPLKVQSCARAIQHMLYNKRFF-PYYVHTIIAGL-DEEGKGAVYSY 159
Query: 124 DMAGCETRKTDFV-AGGSAQNMIMGIGESFWQ---------PGLSPEQLFEVCSQVVIQA 173
D G R +F AGGSA +++M +S P L+ E+ +V A
Sbjct: 160 DPVGSYER--EFCRAGGSAASLVMPFLDSQVNKKNQQVENPPPLTLEEALKVVKDAFSSA 217
Query: 174 CERDTKSGWGATVYVVEPDKV 194
ER G G + +V + V
Sbjct: 218 TERHIHVGDGLEILIVTKEGV 238
>gi|67475302|ref|XP_653346.1| proteasome beta subunit [Entamoeba histolytica HM-1:IMSS]
gi|56470287|gb|EAL47959.1| proteasome beta subunit, putative [Entamoeba histolytica HM-1:IMSS]
Length = 226
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/192 (18%), Positives = 79/192 (41%), Gaps = 8/192 (4%)
Query: 7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMT 66
G V + G++ I D + + + ++K++ ++ G+ AD + +++
Sbjct: 29 GTCVVIKGEDFVVIASDTRMSRDYMILTRNDSKIYPLTSKCVFTGSGMRADIKELTDQIK 88
Query: 67 LRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMA 126
NY +S ++ A + S LY+ + P + ++AG G+ D
Sbjct: 89 AHIKNYKYENGKEMSTESVAQVLSNTLYSHRFF-PYYSFSLLAGI-NSKGKAVTYNYDAV 146
Query: 127 GC-ETRKTDFVAGGSAQNMIMGIGESFWQPGLSP---EQLFEVCSQVVIQACERDTKSGW 182
G E RK + GS + + + +S + P ++ + V+ ACERD +G
Sbjct: 147 GSFEERK--YSCSGSGEELAYPLLDSLLKDRTEPLGEQEAINIARDVMTSACERDIHTGD 204
Query: 183 GATVYVVEPDKV 194
+ ++ + +
Sbjct: 205 NVEIVILNSNGI 216
>gi|409078890|gb|EKM79252.1| hypothetical protein AGABI1DRAFT_113835 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 256
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 83/201 (41%), Gaps = 22/201 (10%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG I+A+AG + I D +G Y KV +++ L G ADG F +K
Sbjct: 23 NGGTILAIAGADFSVIAGDTRQSEGYSIQTRYAPKVFRLTDKAVLAVNGFAADGNMFVKK 82
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPD-SGEVFLSTL 123
+ R Y + + A + LY+R+ P ++ I+ G D +G V+ +
Sbjct: 83 VRQRLEWYRHAHAKDMPIRAIARLIQTMLYSRRFF-PYYVYNILGGIEEDGTGAVY--SF 139
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGI--------------GESFWQPG-LSPEQLFEVCSQ 168
D G R+ A G+AQ+++ G SF PG LS + +
Sbjct: 140 DPVGSYEREA-CRAAGAAQSLVQPFLDNQIYFKNQTPAPGTSF--PGHLSLSTVLSLVID 196
Query: 169 VVIQACERDTKSGWGATVYVV 189
A ER + G G +Y+V
Sbjct: 197 SFTSATERHIEVGDGLEMYIV 217
>gi|2055311|dbj|BAA19766.1| LMP2 [Oryzias latipes]
Length = 213
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 80/189 (42%), Gaps = 9/189 (4%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G I+A+ +G D + GD + NK+ + +Y G AD AE +
Sbjct: 14 GTTIIAIEFNGGVVLGSDSRVSAGDSVVNRVMNKLSPLHDRIYCALSGSAADAQTIAEMV 73
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGF-YPDSGEVFLSTLD 124
+ V S + P +A + + K L + I+AG+ D G+VF +
Sbjct: 74 NYQLD--VHSLEIDEDPQVRSAATLVKNISYKYKEELSAHLIVAGWDRRDGGQVFAT--- 128
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ G TR+ F GGS + + G ++ ++ G++ E+ + + A RD S G
Sbjct: 129 LGGLLTRQP-FAIGGSGSSYVYGFVDAEYRRGMTKEECQKFVVNTLALAMNRDGSS--GG 185
Query: 185 TVYVVEPDK 193
Y+V D+
Sbjct: 186 VAYIVTIDE 194
>gi|310800635|gb|EFQ35528.1| proteasome A-type and B-type [Glomerella graminicola M1.001]
Length = 228
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 74/182 (40%), Gaps = 10/182 (5%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
+N G +I+A+ K+ +G D G + +K+ Q+ ++ G AD A
Sbjct: 26 VNLGTSIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTQVHDTIWCCRSGSAADTQAVA 85
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARK--LTSPLFINPIIAGF-YPDSGEVF 119
+ + + Y P T AAI YA K LT+ L IIAG+ G+V+
Sbjct: 86 DIVQYQLGMYAMRNGKPPMTQTAAAIFQEVCYANKDRLTAGL----IIAGWDERHGGQVY 141
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
L G K + GGS I G + W+ G+ + + + +A + D
Sbjct: 142 SIPL---GGSLHKQSYAIGGSGSTYIYGYCDEHWREGMEEQDAVDFVKGSLKEAIKWDGS 198
Query: 180 SG 181
SG
Sbjct: 199 SG 200
>gi|409040369|gb|EKM49857.1| hypothetical protein PHACADRAFT_265596 [Phanerochaete carnosa
HHB-10118-sp]
Length = 252
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 83/203 (40%), Gaps = 26/203 (12%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG I+A+AG + + D +G Y KVH+++ L G ADG F +K
Sbjct: 20 NGGTILAIAGADFSVVAGDTRQSEGYSIQTRYAPKVHKLTDRAVLAVNGFAADGNMFVKK 79
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPD-SGEVFLSTL 123
+ R Y + + A + LY ++ P ++ I+ G D +G ++ +
Sbjct: 80 VKQRLEWYRHAHAKDMPLRAIARLIQTMLYGQRFF-PYYVYNILGGIEEDGTGAIY--SF 136
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQ----------PGLSPE----QLFEVCSQV 169
D G R+T AG + M + + F P SP L +V S V
Sbjct: 137 DPVGSYERETCRAAGAA-----MALVQPFLDNQIYFKNQQAPADSPHPVHLPLQDVLSIV 191
Query: 170 V---IQACERDTKSGWGATVYVV 189
+ A ER + G G +YV+
Sbjct: 192 IDSFTSATERHIEVGDGLEIYVI 214
>gi|401827105|ref|XP_003887645.1| proteasome subunit beta type-1 [Encephalitozoon hellem ATCC 50504]
gi|392998651|gb|AFM98664.1| proteasome subunit beta type-1 [Encephalitozoon hellem ATCC 50504]
Length = 290
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 73/174 (41%), Gaps = 27/174 (15%)
Query: 46 HLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFIN 105
+ +L G AD + KM Y PI+ + A + S LY+R+ P +
Sbjct: 129 NFFLTGTGFYADSHEVYVKMEYEIRQYEV--DGPINIHSAANLLSKILYSRRFF-PYYSY 185
Query: 106 PIIAGFYPDSGEVFLSTLDMAG------CETRKTDFVAGGSAQNMIMGIGESF-----W- 153
++GF D+G+ ++ D G CE GS ++MI + +SF W
Sbjct: 186 CTLSGF--DNGKPYIYAYDPVGSFESVTCE-------CNGSGRSMIQPLLDSFIDKKNWH 236
Query: 154 ---QPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
Q LS E + ++ A ERD K+ +YV+ +KV + + R D
Sbjct: 237 NAEQTQLSQEDCVRLIAKAFASAAERDIKTKDNLEIYVLRENKVVHKVLPLRRD 290
>gi|448729602|ref|ZP_21711917.1| proteasome subunit beta [Halococcus saccharolyticus DSM 5350]
gi|445794904|gb|EMA45442.1| proteasome subunit beta [Halococcus saccharolyticus DSM 5350]
Length = 232
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 72/196 (36%), Gaps = 10/196 (5%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
L G V + + + D G+ ++ KV ++ P L G +
Sbjct: 35 LKTGTTTVGLTAEGGVVLAADMRASAGNMVASKDARKVLEVHPTAALTIAGSVSAAQSLV 94
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLF--INPIIAGFYPDSGEVFL 120
+ Y + +S + A L A L S F + P++ G D V+
Sbjct: 95 NSLQAEVRLYETRRDTGMSLEALA-----NLTANLLRSGNFHIVQPVLGGVDDDGSHVYS 149
Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKS 180
G D+ GS +G+ E + G+S + + ++ V A ERDT S
Sbjct: 150 IG---PGGSVMAEDYAVSGSGSPFALGVLEQEYDEGMSVDDAETIAARAVQSATERDTAS 206
Query: 181 GWGATVYVVEPDKVTI 196
G G T+ + D VTI
Sbjct: 207 GNGLTLATITADGVTI 222
>gi|392559294|gb|EIW52479.1| proteasome subunit [Trametes versicolor FP-101664 SS1]
Length = 252
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 84/203 (41%), Gaps = 24/203 (11%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG I+A+AG + I D +G Y KV +++ L G ADG F +
Sbjct: 19 DNGGTILAIAGADFTVIAGDTRQSEGYSIQTRYAPKVFRLTDRAVLAVNGFAADGNMFVK 78
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPD-SGEVFLST 122
K+ R Y + + A + LYA++ P ++ I+ G D SG V+ +
Sbjct: 79 KVKQRLEWYRHAHAKDMPLRAIARLIQTMLYAQRFF-PYYVYNILGGIEEDGSGAVY--S 135
Query: 123 LDMAGCETRKTDFVAGGSA-------------QNMIMGIGESFWQPGLSPEQLFEVCSQV 169
D G R+ AG + +N +G+S P P L +V + V
Sbjct: 136 FDPVGSYEREACRAAGAAQSLVQPFLDNQIYFKNQTAAVGQS--HPTHLP--LPDVLAIV 191
Query: 170 V---IQACERDTKSGWGATVYVV 189
+ A ER + G G +YVV
Sbjct: 192 IDSFTSATERHIEVGDGLEIYVV 214
>gi|67465041|ref|XP_648707.1| proteasome alpha subunit [Entamoeba histolytica HM-1:IMSS]
gi|56464951|gb|EAL43321.1| proteasome alpha subunit, putative [Entamoeba histolytica
HM-1:IMSS]
Length = 245
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 67/154 (43%), Gaps = 21/154 (13%)
Query: 2 SLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN-----KVHQMSPHLYLINPGLCA 56
+++ G V + GK+C GV+ +IA+ ++ K+ Q+ H+Y GL A
Sbjct: 25 AVSKGLVSVGVKGKDCIIFGVEKK------SIAKLQDPRTVRKIQQIDQHIYTTFAGLTA 78
Query: 57 DGMQFAEKMTLRTANYVAS-EQSPISPDTFAAIASWELYARKLTS-----PLFINPIIAG 110
D K L NY S E +P A+A+ Y +K T P I+ +I G
Sbjct: 79 DARVLINKARLEAQNYRMSMEDAPTVEYVTKAVAN---YQQKYTQQGGSRPFGISTLIGG 135
Query: 111 FYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNM 144
F PD G L D AG T V G +++ +
Sbjct: 136 FDPD-GTPRLYQTDPAGTWTEWKAHVVGRNSKTV 168
>gi|348561057|ref|XP_003466329.1| PREDICTED: proteasome subunit beta type-6-like [Cavia porcellus]
Length = 239
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 78/180 (43%), Gaps = 6/180 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ +G D G + +K+ + ++ G AD A
Sbjct: 31 VSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVA 90
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSGEVFLS 121
+ +T + + P P A + ++ + L I+AG+ P + G+V+
Sbjct: 91 DAVTYQLGFHSIELNEP--PLVHTAASLFKEMCYRYREDLMAGIIVAGWDPQEGGQVY-- 146
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
++ M G R++ F GGS + I G ++ ++ G++ E+ + + + A ERD SG
Sbjct: 147 SVPMGGMLVRQS-FAIGGSGSSYIYGYVDATYRKGMTKEECLQFTANALALAMERDGSSG 205
>gi|344229599|gb|EGV61484.1| N-terminal nucleophile aminohydrolase [Candida tenuis ATCC 10573]
Length = 242
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 94/220 (42%), Gaps = 23/220 (10%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG ++ +AGK+ + D V+G + YE K+ + + + G ADG
Sbjct: 27 DNGGTVLGIAGKDFAVLAGDTRHVEGYSINSRYEPKIFNVGDDIVMTANGFAADGKALIN 86
Query: 64 --KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLS 121
K L+ + +++ S + A LY ++ P +++ +IAG D G+ +
Sbjct: 87 SFKTQLKWYKFDHNDKR-FSIQSAARYIRHLLYGKRFF-PYYVSTLIAGL-DDEGKGCVY 143
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGI------GESFWQPG-----------LSPEQLFE 164
+ D G R+ AGGSA ++IM ++ ++P L +++ E
Sbjct: 144 SFDPVGSYEREQ-CRAGGSASSLIMPFLDNQVNFKNQYEPDSDGKVKKPLRYLELDEVLE 202
Query: 165 VCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
+ A ER + G G +++V + V + + D
Sbjct: 203 LVKDAFSSATERHIQVGDGLEIHIVTKEGVRVEYFPLKRD 242
>gi|398395561|ref|XP_003851239.1| proteasome core particle subunit beta 1 [Zymoseptoria tritici
IPO323]
gi|339471118|gb|EGP86215.1| hypothetical protein MYCGRDRAFT_73771 [Zymoseptoria tritici IPO323]
Length = 231
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 79/198 (39%), Gaps = 7/198 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
+N G +I+A+ K+ +G D G + +K+ Q+ ++ G AD A
Sbjct: 25 VNLGTSIMAINFKDGVILGADSRTTTGAYIANRVTDKLTQVHDTIWCCRSGSAADTQAVA 84
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGF-YPDSGEVFLS 121
+ + Y + P + T AAI Y K L IIAG+ + G+V+
Sbjct: 85 DIVQYHLGMYGITNDEPPTTQTAAAIFQELCYDNK--DSLSAGIIIAGWDHRHGGQVYSI 142
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
L G K + GGS I G ++ W+ G+ + + +A + D SG
Sbjct: 143 PL---GGSLHKQSYAIGGSGSTYIYGYCDANWKEGMDEAEGISFVKGALQEAIKWDGSSG 199
Query: 182 WGATVYVVEPDKVTIRKI 199
G VV K +R +
Sbjct: 200 -GVIRMVVLTAKGAVRHL 216
>gi|325092320|gb|EGC45630.1| proteasome component [Ajellomyces capsulatus H88]
Length = 805
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 74/173 (42%), Gaps = 10/173 (5%)
Query: 27 VQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFA 86
++G + ++K ++S H + G D +QFAE + Y ++ +SP A
Sbjct: 1 MRGATILKASDDKTRELSKHTIMAFSGEAGDTVQFAEYIQANVQLYSMRNEAELSPSAVA 60
Query: 87 AIASWELYARKLTS--PLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNM 144
+ EL AR L S P +N ++ G P + + L LD + A G AQ
Sbjct: 61 SFVRGEL-ARSLRSRRPYTVNLLLGGVDPITEKPSLYWLDYLAA-LAPVPYAAHGYAQYY 118
Query: 145 IMGIGESFWQPGLSPEQ---LFEVCSQVVIQACERDTKSGWGATVYVVEPDKV 194
+ I + P ++ EQ L E+C+ + + D K G V VV D +
Sbjct: 119 CLSILDKHHHPDITLEQGLKLLEMCTDELKRRLPIDFK---GVLVKVVRKDGI 168
>gi|146304800|ref|YP_001192116.1| proteasome endopeptidase complex protein [Metallosphaera sedula DSM
5348]
gi|302595852|sp|A4YIE0.1|PSB1_METS5 RecName: Full=Proteasome subunit beta 1; AltName: Full=20S
proteasome beta subunit 1; AltName: Full=Proteasome core
protein PsmB 1; Flags: Precursor
gi|145703050|gb|ABP96192.1| proteasome endopeptidase complex, beta component, Threonine
peptidase, MEROPS family T01A [Metallosphaera sedula DSM
5348]
Length = 217
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 7/182 (3%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G V + K+ + D G F + K+ + + + G AD +QF
Sbjct: 21 GTTTVGLVVKDAVILAADRRASAGFFVANKMVRKIVYIDDRIGMTTAGSVAD-LQFIYNY 79
Query: 66 TLRTANY-VASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+Y + S P++ + A + L K ++ I+ G Y +F LD
Sbjct: 80 MKNIYHYNLISGNRPVTVKSLATYLTNILSQNKYFP--YLVQILMGGYDTQPRLF--NLD 135
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G T +T +VA GS + MG+ E + P L+ +Q ++ ++ V+ A +RD+ +G G
Sbjct: 136 YLGDMTEET-YVATGSGSPVAMGVLEDGYSPDLTGDQAMDLAARAVMSAIKRDSFTGTGV 194
Query: 185 TV 186
V
Sbjct: 195 IV 196
>gi|397610458|gb|EJK60845.1| hypothetical protein THAOC_18741 [Thalassiosira oceanica]
Length = 283
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 89/208 (42%), Gaps = 11/208 (5%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG +A++G + + D L G ++ +K+H ++ L + G D Q
Sbjct: 79 NGGTTLAISGPDYAVVAADTRLSSGYEILSRNVSKLHPLTGRCVLGSAGCKTDVDQLRSV 138
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ ++ Y + + P++ + A + LY ++ P + ++AG G+ + + D
Sbjct: 139 LDIKMKVYAHNHRKPMATPSVAQMLGNTLYYKRFF-PYYSFNVLAGI-DSEGKGAVYSYD 196
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFW--------QPGLSPEQLFEVCSQVVIQACER 176
G R T F A GS Q+ ++ + ++ + L E++ E+ + A ER
Sbjct: 197 AIGSFER-TPFSASGSGQSFLIPLMDNVISHKNRLDERRDLPAEEVVEIVKDAFLTAGER 255
Query: 177 DTKSGWGATVYVVEPDKVTIRKIATRMD 204
D +G + V+ D + + + D
Sbjct: 256 DIYTGDAVDIMVITKDGIDKQTFQLKAD 283
>gi|167378516|ref|XP_001734828.1| proteasome subunit alpha type-7 [Entamoeba dispar SAW760]
gi|167540168|ref|XP_001741590.1| proteasome subunit alpha type-7 [Entamoeba dispar SAW760]
gi|165893840|gb|EDR21965.1| proteasome subunit alpha type-7, putative [Entamoeba dispar SAW760]
gi|165903479|gb|EDR29009.1| proteasome subunit alpha type-7, putative [Entamoeba dispar SAW760]
Length = 245
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 67/154 (43%), Gaps = 21/154 (13%)
Query: 2 SLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN-----KVHQMSPHLYLINPGLCA 56
+++ G V + GK+C GV+ +IA+ ++ K+ Q+ H+Y GL A
Sbjct: 25 AVSKGLVSVGVKGKDCIIFGVEKK------SIAKLQDPRTVRKIQQIDQHIYTTFAGLTA 78
Query: 57 DGMQFAEKMTLRTANYVAS-EQSPISPDTFAAIASWELYARKLTS-----PLFINPIIAG 110
D K L NY S E +P A+A+ Y +K T P I+ +I G
Sbjct: 79 DARVLINKARLEAQNYRMSMEDAPTVEYVTKAVAN---YQQKYTQQGGSRPFGISTLIGG 135
Query: 111 FYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNM 144
F PD G L D AG T V G +++ +
Sbjct: 136 FDPD-GTPRLYQTDPAGTWTEWKAHVVGRNSKTV 168
>gi|67476244|ref|XP_653725.1| proteasome alpha subunit [Entamoeba histolytica HM-1:IMSS]
gi|56470703|gb|EAL48337.1| proteasome alpha subunit, putative [Entamoeba histolytica
HM-1:IMSS]
Length = 245
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 67/154 (43%), Gaps = 21/154 (13%)
Query: 2 SLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN-----KVHQMSPHLYLINPGLCA 56
+++ G V + GK+C GV+ +IA+ ++ K+ Q+ H+Y GL A
Sbjct: 25 AVSKGLVSVGVKGKDCIIFGVEKK------SIAKLQDPRTVRKIQQIDQHIYTTFAGLTA 78
Query: 57 DGMQFAEKMTLRTANYVAS-EQSPISPDTFAAIASWELYARKLTS-----PLFINPIIAG 110
D K L NY S E +P A+A+ Y +K T P I+ +I G
Sbjct: 79 DARVLINKARLEAQNYRMSMEDAPTVEYVTKAVAN---YQQKYTQQGGSRPFGISTLIGG 135
Query: 111 FYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNM 144
F PD G L D AG T V G +++ +
Sbjct: 136 FDPD-GTPRLYQTDPAGTWTEWKAHVVGRNSKTV 168
>gi|433591793|ref|YP_007281289.1| proteasome endopeptidase complex, archaeal, beta subunit [Natrinema
pellirubrum DSM 15624]
gi|448334129|ref|ZP_21523310.1| proteasome endopeptidase complex, beta subunit [Natrinema
pellirubrum DSM 15624]
gi|433306573|gb|AGB32385.1| proteasome endopeptidase complex, archaeal, beta subunit [Natrinema
pellirubrum DSM 15624]
gi|445620471|gb|ELY73968.1| proteasome endopeptidase complex, beta subunit [Natrinema
pellirubrum DSM 15624]
Length = 243
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 66/156 (42%), Gaps = 8/156 (5%)
Query: 29 GDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAI 88
G F + KV Q+ P L G F + Y A +S + A +
Sbjct: 72 GRFVSNKNVQKVEQIHPTGALTLVGSVGGAQSFISTLRAEVNLYEARRGENMSIEALATL 131
Query: 89 ASWELYARKLTSPLF-INPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMG 147
A +AR P F I+PI+ G + V+ ++D AG + D+ GS + G
Sbjct: 132 AGN--FARG--GPFFAIHPILGGVDDEGSHVY--SIDPAGG-VMEDDYTVTGSGMQLAYG 184
Query: 148 IGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWG 183
E ++P +S E+ V ++ + A ERDT SG G
Sbjct: 185 HLEQAYEPDMSTEEAKTVAARGIKSAVERDTGSGNG 220
>gi|195035353|ref|XP_001989142.1| GH11559 [Drosophila grimshawi]
gi|193905142|gb|EDW04009.1| GH11559 [Drosophila grimshawi]
Length = 206
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 82/190 (43%), Gaps = 9/190 (4%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
++ + G + + D + E ENK+H+++ +L + G D QF E +
Sbjct: 4 LLGIKGPDFVMLAADTTHAHSVIVMKEDENKIHKVADNLLISTVGESGDTEQFTEFIAKN 63
Query: 69 TANYVASEQSPISPDTFAAIASWELYARKLTS----PLFINPIIAGFYPDSGEVFLSTLD 124
A Y +SP + A L A L S +F+ +AG+ P+ G L+ +D
Sbjct: 64 IALYKMRNGYDLSPRSAAHFTRKNL-AESLRSRTRYQVFM--FVAGYDPNEGPE-LTFID 119
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
++ ++ G I + +W P ++ E+ ++V + V++ +R +
Sbjct: 120 YLAS-SKSLNYAGHGYGSMFCASIFDRYWHPNITQEEAYDVLKKCVLEIQKRLIVNLKNF 178
Query: 185 TVYVVEPDKV 194
+V VV+ + V
Sbjct: 179 SVAVVDKNGV 188
>gi|365984377|ref|XP_003669021.1| hypothetical protein NDAI_0C01170 [Naumovozyma dairenensis CBS 421]
gi|343767789|emb|CCD23778.1| hypothetical protein NDAI_0C01170 [Naumovozyma dairenensis CBS 421]
Length = 263
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 79/190 (41%), Gaps = 9/190 (4%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G IV + ++ I D QG + K+H++SP ++ G AD E +
Sbjct: 30 GTTIVGLKYRDGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAAD----TEAV 85
Query: 66 TLRTANYVA--SEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
T + + S + SP +A+ + + K + I+AG P +F ++
Sbjct: 86 TQLIGSNIELHSLYTSRSPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDPTGAHLF--SI 143
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWG 183
G T +++ GS M + ES W+P LS E+ E+ SQ + D SG
Sbjct: 144 HAHG-STDVGYYLSLGSGSLAAMAVLESQWRPELSKEEAIELASQAIQAGIWNDLGSGSN 202
Query: 184 ATVYVVEPDK 193
V V+E K
Sbjct: 203 VDVCVMEVGK 212
>gi|149724885|ref|XP_001504802.1| PREDICTED: proteasome subunit beta type-6-like [Equus caballus]
Length = 239
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 78/180 (43%), Gaps = 6/180 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ +G D G + +K+ + ++ G AD A
Sbjct: 31 VSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVA 90
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSGEVFLS 121
+ +T + + P P A + ++ + L I+AG+ P + G+V+
Sbjct: 91 DAVTYQLGFHSIELNEP--PLVHTAASLFKEMCYRYREDLMAGIIVAGWDPQEGGQVY-- 146
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
++ M G R++ F GGS + I G ++ ++ G++ E+ + + + A ERD SG
Sbjct: 147 SVPMGGMMVRQS-FAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSG 205
>gi|145545111|ref|XP_001458240.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124426059|emb|CAK90843.1| unnamed protein product [Paramecium tetraurelia]
Length = 236
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 75/171 (43%), Gaps = 10/171 (5%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
GG+++A+ +G D L G + K+ Q+S + + G +D Q +++
Sbjct: 21 GGSVIALVYNGGVIVGTDTLCSYGSMAAFKNVQKIAQISKNTIYASSGEYSDFQQVVKEL 80
Query: 66 TL--RTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
R+A P D +A R +PL++ +IAGF+ +GE +L +
Sbjct: 81 AKIDRSALQYDDGVHPSPKDYGNFLARLSYKKRCKINPLYLQNVIAGFH--NGERYLGLI 138
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQAC 174
D+ G +++F+ G A I ++W + +Q ++ VI+ C
Sbjct: 139 DIYGTYL-ESNFITTGFASYFCKAIISNYWNENCTLDQ-----AKQVIREC 183
>gi|432882597|ref|XP_004074109.1| PREDICTED: LMP2 [Oryzias latipes]
gi|58220850|dbj|BAB83845.1| PSMB9 [Oryzias latipes]
gi|295901522|dbj|BAJ07278.1| proteasome subunit, beta type 9 [Oryzias latipes]
Length = 216
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 80/189 (42%), Gaps = 9/189 (4%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G I+A+ +G D + GD + NK+ + +Y G AD AE +
Sbjct: 17 GTTIIAIEFNGGVVLGSDSRVSAGDSVVNRVMNKLSPLHDKIYCALSGSAADAQTIAEMV 76
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGF-YPDSGEVFLSTLD 124
+ V S + P +A + + K L + I+AG+ D G+VF +
Sbjct: 77 NYQLD--VHSLEIDEDPQVRSAATLVKNISYKYKEELSAHLIVAGWDRRDGGQVFAT--- 131
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ G TR+ F GGS + + G ++ ++ G++ E+ + + A RD S G
Sbjct: 132 LGGLLTRQP-FAIGGSGSSYVYGFVDAEYRRGMTKEECQKFVVNTLALAMNRDGSS--GG 188
Query: 185 TVYVVEPDK 193
Y+V D+
Sbjct: 189 VAYIVTIDE 197
>gi|402467038|gb|EJW02410.1| hypothetical protein EDEG_03164 [Edhazardia aedis USNM 41457]
Length = 204
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 12/179 (6%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G IVA+ N IG D G F + Y +K+ +++ +Y G AD M A +
Sbjct: 11 GTTIVAIKTPNSVIIGADTRTSSGRFIPSRYTDKLTKLTDTIYCCRSGSAADTMYIANLI 70
Query: 66 T--LRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFI-NPIIAGFYPDSGEVFLST 122
T L Y+ + + + AA EL + P F+ I+AGF V+ T
Sbjct: 71 TMYLEKQEYLYNTKPTVK---LAATYCQELI---YSYPDFLAGMIVAGFDEFGPSVYTIT 124
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
L G K D+ GGS + + ++ + EQ + V A +RD SG
Sbjct: 125 L---GGTIVKGDYAIGGSGSIHLYSFFDENFRNDFTDEQGLAFVKKAVSAAIKRDNFSG 180
>gi|8567394|ref|NP_038613.1| proteasome subunit beta type-9 [Mus musculus]
gi|984353|gb|AAA75306.1| 20S proteasome subunit Lmp2 [Mus musculus]
gi|2073368|dbj|BAA19855.1| low-molecular-weight polypeptide 2 [Mus musculus]
gi|2467361|dbj|BAA22582.1| low molecular mass polypeptide complex subunit 2 [Mus musculus
molossinus]
gi|2555189|gb|AAB81528.1| 20S proteasome subunit lmp2 [Mus musculus]
gi|12842607|dbj|BAB25664.1| unnamed protein product [Mus musculus]
Length = 219
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 81/188 (43%), Gaps = 9/188 (4%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ +G D + G + +K+ + H++ G AD A
Sbjct: 17 VHTGTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQHIFCALSGSAADAQAIA 76
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSGEVFLS 121
+ + + + P P AA + + K L + I+AG+ + G+V+ +
Sbjct: 77 DMAAYQLELHGLELEEP--PLVLAAANVVKNISYKYREDLLAHLIVAGWDQCEGGQVYGT 134
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
M G R+ F GGS + I G ++ ++PG++PE+ + + A RD S
Sbjct: 135 ---MGGMLIRQP-FTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTDAITLAMNRDGSS- 189
Query: 182 WGATVYVV 189
G +Y+V
Sbjct: 190 -GGVIYLV 196
>gi|115444637|ref|NP_001046098.1| Os02g0182500 [Oryza sativa Japonica Group]
gi|113535629|dbj|BAF08012.1| Os02g0182500, partial [Oryza sativa Japonica Group]
Length = 47
Score = 46.6 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 28/46 (60%)
Query: 159 PEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
PE+LFE SQ + + +RD SGWG V +V P +V R I RMD
Sbjct: 2 PEELFETISQALQASVDRDCLSGWGGYVLLVTPTEVQERVIKGRMD 47
>gi|334323745|ref|XP_001377227.2| PREDICTED: proteasome subunit beta type-8-like [Monodelphis
domestica]
Length = 268
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 85/193 (44%), Gaps = 6/193 (3%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQ 60
+ + G +A ++ + VD G + + NKV +++P+L G CA Q
Sbjct: 59 IEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLHVNKVIEINPYLLGTMSG-CAADCQ 117
Query: 61 FAEKMTLRTAN-YVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
+ E++ + Y IS + + S + + L + +I G+ D
Sbjct: 118 YWERLLAKECRLYRLRNGERISVSAASKLLS-NMMCQYRGMGLSMGSMICGW--DKKGPG 174
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
L +D G T F + GS + G+ +S ++P LSPE+ +++ + ++ A RD+
Sbjct: 175 LYYVDENGTRLSGTMF-STGSGNSYAYGVMDSGYRPDLSPEEAYDLGRRAIVHATHRDSY 233
Query: 180 SGWGATVYVVEPD 192
SG +Y ++ D
Sbjct: 234 SGGFVNMYHMKED 246
>gi|322801573|gb|EFZ22229.1| hypothetical protein SINV_11095 [Solenopsis invicta]
Length = 207
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 70/167 (41%), Gaps = 17/167 (10%)
Query: 23 DHLLVQGDFTIAEY-------ENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVAS 75
D +LV D T A+ E+K+H++S L + G D QF+E + Y
Sbjct: 11 DFVLVAADMTTAQSIIVMKSDEHKIHKISDKLVMAISGESGDTTQFSEYIGKNIQLYKMR 70
Query: 76 EQSPISPDTFAAIASWEL--YARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKT 133
+SP A L Y R T P F+N ++AG+ DSG +A C +
Sbjct: 71 NGYELSPKAAACFTRRNLADYLRSRT-PYFVNMLLAGYDDDSGPELYFIDYLASCV--RV 127
Query: 134 DFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKS 180
+ G M + + +++ + E+ + V+++ C R+ +
Sbjct: 128 PYATHGYGGMFSMSVLDRYYKYDCTEEEAY-----VLLKKCVREIQK 169
>gi|407464585|ref|YP_006775467.1| proteasome endopeptidase complex protein [Candidatus Nitrosopumilus
sp. AR2]
gi|407047773|gb|AFS82525.1| proteasome endopeptidase complex protein [Candidatus Nitrosopumilus
sp. AR2]
Length = 194
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 83/192 (43%), Gaps = 23/192 (11%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
DGG + A + F G+F +++ K ++ + GL AD MQ
Sbjct: 12 DGGVVFASEKRIAF----------GNFLVSKSTKKTFPITNKVGATCAGLVAD-MQI--- 57
Query: 65 MTLRTANYVASEQ----SPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFL 120
+TL+ A + + P+T A + S +Y R+ PL I+ G + +
Sbjct: 58 LTLQIAALAKIRKMELKRDVPPNTVAKMMSNMMYERRYF-PLLTQVIVGGVV---DKPIM 113
Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKS 180
TLD G ++ A G+ M +G+ + ++P ++ ++ ++ + V A RD+ S
Sbjct: 114 YTLDPLGS-VLPDEYAAVGTGAEMALGVLDPQFKPNMTKDEAVDLAKRAVRAAALRDSAS 172
Query: 181 GWGATVYVVEPD 192
G G + V+ D
Sbjct: 173 GDGLDILVITKD 184
>gi|21263862|sp|Q8UW64.1|PSB9_ORYLA RecName: Full=Proteasome subunit beta type-9; AltName: Full=Low
molecular mass protein 2; Flags: Precursor
gi|18478982|dbj|BAB84548.1| PSMB9 [Oryzias latipes]
gi|62122593|dbj|BAD93261.1| PSMB9 [Oryzias latipes]
gi|295901494|dbj|BAJ07258.1| proteasome subunit, beta type 9 [Oryzias latipes]
gi|295901520|dbj|BAJ07277.1| proteasome subunit, beta type 9 [Oryzias latipes]
gi|295901524|dbj|BAJ07279.1| proteasome subunit, beta type 9 [Oryzias latipes]
Length = 217
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 80/189 (42%), Gaps = 9/189 (4%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G I+A+ +G D + GD + NK+ + +Y G AD AE +
Sbjct: 18 GTTIIAIEFNGGVVLGSDSRVSAGDSVVNRVMNKLSPLHDKIYCALSGSAADAQTIAEMV 77
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGF-YPDSGEVFLSTLD 124
+ V S + P +A + + K L + I+AG+ D G+VF +
Sbjct: 78 NYQLD--VHSLEIDEDPQVRSAATLVKNISYKYKEELSAHLIVAGWDRRDGGQVFAT--- 132
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ G TR+ F GGS + + G ++ ++ G++ E+ + + A RD S G
Sbjct: 133 LGGLLTRQP-FAIGGSGSSYVYGFVDAEYRRGMTKEECQKFVVNTLALAMNRDGSS--GG 189
Query: 185 TVYVVEPDK 193
Y+V D+
Sbjct: 190 VAYIVTIDE 198
>gi|354611438|ref|ZP_09029394.1| proteasome endopeptidase complex, beta subunit [Halobacterium sp.
DL1]
gi|353196258|gb|EHB61760.1| proteasome endopeptidase complex, beta subunit [Halobacterium sp.
DL1]
Length = 243
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 66/159 (41%), Gaps = 8/159 (5%)
Query: 39 KVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKL 98
KV ++ P+ L G F + Y A +S + + +AS L
Sbjct: 82 KVEEIQPNAALSISGSVGGSQAFIRSLRAEANLYEARRGEYMSINALSTMASNLLRG--- 138
Query: 99 TSPLF-INPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGL 157
P F + PI+ G + V+ +LD G + + A GS +G+ E + L
Sbjct: 139 -GPFFLVVPILGGVDEEGAHVY--SLDPGGS-SMSDKYTAQGSGMPYALGVLEQEYTDDL 194
Query: 158 SPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTI 196
+ E+ V +Q V A ERDT SG G + + D +TI
Sbjct: 195 TMEEAERVGAQAVQSASERDTASGNGIHITRITADGITI 233
>gi|342321277|gb|EGU13211.1| Proteasome subunit, beta type, 7, putative [Rhodotorula glutinis
ATCC 204091]
Length = 368
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 85/209 (40%), Gaps = 23/209 (11%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G IV + ++ +G D +G + K+H +S H+ G AD +F M
Sbjct: 86 GTTIVGVVYESGIVLGADTRATEGPIVADKNCEKIHYISEHIRCCGAGTAAD-TEFTTNM 144
Query: 66 TLRTANYVASEQSPISPDTFA-AIASWELYARKLTSP----LFINPII--AGFYPDSGEV 118
++N E S P A A+ + Y + SP IN I +G Y G+V
Sbjct: 145 I--SSNIKLHELSTGRPPLVATAMTMLKQYLFQFVSPHRPLRSINQRIDESGLYRYQGQV 202
Query: 119 ----FLSTLDMAG---------CETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEV 165
L +D G T K +V GS M + E++W+P ++ ++ +V
Sbjct: 203 GAALVLGGIDPTGPHLYTVAPHGSTDKLPYVTMGSGSLAAMAVFETYWKPNMTRQEAIDV 262
Query: 166 CSQVVIQACERDTKSGWGATVYVVEPDKV 194
S+ + D SG V V+E ++V
Sbjct: 263 VSEAIEAGIWNDLGSGSNVDVCVIEGEQV 291
>gi|15232965|ref|NP_191641.1| proteasome subunit beta type-1 [Arabidopsis thaliana]
gi|334186160|ref|NP_001190146.1| proteasome subunit beta type-1 [Arabidopsis thaliana]
gi|297820934|ref|XP_002878350.1| hypothetical protein ARALYDRAFT_907612 [Arabidopsis lyrata subsp.
lyrata]
gi|12643281|sp|P42742.2|PSB1_ARATH RecName: Full=Proteasome subunit beta type-1; AltName: Full=20S
proteasome beta subunit F-1; AltName: Full=Proteasome
component 5; AltName: Full=Proteasome subunit beta
type-6; AltName: Full=TAS-F22/FAFP98; AltName:
Full=TAS-G39.20
gi|577531|emb|CAA56201.1| proteasome subunit [Arabidopsis thaliana]
gi|3421120|gb|AAC32073.1| 20S proteasome beta subunit PBF1 [Arabidopsis thaliana]
gi|7329692|emb|CAB82686.1| proteasome component C5 [Arabidopsis thaliana]
gi|17065428|gb|AAL32868.1| proteasome component C5 [Arabidopsis thaliana]
gi|20148485|gb|AAM10133.1| proteasome component C5 [Arabidopsis thaliana]
gi|21554745|gb|AAM63678.1| proteasome component C5 [Arabidopsis thaliana]
gi|297324188|gb|EFH54609.1| hypothetical protein ARALYDRAFT_907612 [Arabidopsis lyrata subsp.
lyrata]
gi|332646591|gb|AEE80112.1| proteasome subunit beta type-1 [Arabidopsis thaliana]
gi|332646593|gb|AEE80114.1| proteasome subunit beta type-1 [Arabidopsis thaliana]
Length = 223
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 87/214 (40%), Gaps = 16/214 (7%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
N+GG VA+AG + I D + G ++ +K+H+++ L + G AD +
Sbjct: 13 NNGGTCVAIAGSDYCVIAADTRMSTGYSILSRDYSKIHKLADRAVLSSSGFQADVKALQK 72
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y +S A + S LY ++ P + ++ G + G+ + T
Sbjct: 73 VLKSRHLIYQHQHNKQMSCPAMAQLLSNTLYFKRFF-PYYAFNVLGGL-DEEGKGCVFTY 130
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQ---PGLSPEQ----------LFEVCSQVV 170
D G R + A GS +IM ++ + P L P+Q ++ V
Sbjct: 131 DAVGSYER-VGYGAQGSGSTLIMPFLDNQLKSPSPLLLPKQDSNTPLSEAEAVDLVKTVF 189
Query: 171 IQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A ERD +G + +++ D + + R D
Sbjct: 190 ASATERDIYTGDKLEIMILKADGIKTELMDLRKD 223
>gi|395325433|gb|EJF57855.1| proteasome subunit [Dichomitus squalens LYAD-421 SS1]
Length = 252
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 86/204 (42%), Gaps = 26/204 (12%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG I+A+AG + I D +G Y KV +++ L G ADG F +
Sbjct: 19 DNGGTILAIAGADFTVIAGDTRQSEGYSIQTRYAPKVFRLTDRAVLAVNGFAADGNMFVK 78
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPD-SGEVFLST 122
K+ R Y + + A + LYA++ P ++ I+ G D SG V+ +
Sbjct: 79 KVKQRLEWYRHAHAKDMPLHAIARLIQTMLYAQRFF-PYYVYNILGGIEEDGSGAVY--S 135
Query: 123 LDMAGCETRKTDFVAGGSAQNMIM--------------GIGESFWQPGLSPEQLFEVCSQ 168
D G R+ A G+AQ+++ G+S P P L +V +
Sbjct: 136 FDPVGSYEREA-CRAAGAAQSLVQPFLDNQIYFKNQKAAAGQS--HPAHLP--LSDVLAI 190
Query: 169 VV---IQACERDTKSGWGATVYVV 189
V+ A ER + G G +YVV
Sbjct: 191 VIDSFTSATERHIEVGDGLEIYVV 214
>gi|340054849|emb|CCC49156.1| putative 20S proteasome beta 6 subunit [Trypanosoma vivax Y486]
gi|340054851|emb|CCC49158.1| putative 20S proteasome beta 6 subunit [Trypanosoma vivax Y486]
Length = 258
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 86/213 (40%), Gaps = 16/213 (7%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN--KVHQMSPHLYLINPGLCADGMQF 61
++GG + A+AGK+ +G D L GDF I + K+ Q++ H++L + G+ AD +Q
Sbjct: 50 DNGGTVAAVAGKDYVILGGDTRL-NGDFCIHSRNDRSKLFQLTDHVFLASTGMQADRLQL 108
Query: 62 AEKMTLRTANYVASEQSPI-SPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFL 120
+ + R Y + + S A + S LY R+ P + +I G + G
Sbjct: 109 QQMLKYRIQWYQYNNGGEVPSTRAIAKLTSTILYQRRFF-PYYTFNMIVGL-DEKGAGVC 166
Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQ---------PGLSPEQLFEVCSQVVI 171
+ D G T + GSA + I + + L + E+
Sbjct: 167 YSYDPVG-STEPFRYGTSGSASSFIEPLMDCLLTRQHMVQQAPAELGMNEALEMLKSAFT 225
Query: 172 QACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A ERD +G +++ + V R D
Sbjct: 226 GAAERDIFTGDSVCFHIITTEGVRTEFFELRKD 258
>gi|320590812|gb|EFX03255.1| proteasome component [Grosmannia clavigera kw1407]
Length = 208
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 75/188 (39%), Gaps = 4/188 (2%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
++ + GK+ + +++G IA +NK Q + H L G D +QFAE +
Sbjct: 4 LLGITGKDFTLVAASKAVMRGPTIIAARDNKTRQPNKHTLLAFSGEPGDTVQFAEYIQAN 63
Query: 69 TANYVASEQSPISPDTFAAIASWELYARKLTS--PLFINPIIAGFYPDSGEVFLSTLDMA 126
Y + +SP A EL A L S P +N ++ G P + + L +D
Sbjct: 64 IQLYTMRNAAELSPSAVAHFVRGEL-ASSLRSRKPYTVNLLLGGVDPITHKPSLYWIDYL 122
Query: 127 GCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATV 186
+ A G AQ + I + P ++ +Q ++ S + R G V
Sbjct: 123 AS-LAPVPYAAHGYAQYYCLSILDKHHHPDITLDQGIKLLSMCTDELKRRMPIDFKGMIV 181
Query: 187 YVVEPDKV 194
VV D V
Sbjct: 182 KVVTKDGV 189
>gi|344259274|gb|AEN03334.1| proteasome subunit beta type 6 [Sus scrofa]
gi|344259276|gb|AEN03335.1| proteasome subunit beta type 6 [Sus scrofa]
Length = 239
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 77/180 (42%), Gaps = 6/180 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ +G D G + +K+ + ++ G AD A
Sbjct: 31 VSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVA 90
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSGEVFLS 121
+ +T + + P P A + ++ + L I+AG+ P + G+V+
Sbjct: 91 DAVTYQLGFHSIELNEP--PLVHTAASLFKEMCYRYREDLMAGIIVAGWDPQEGGQVY-- 146
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
++ M G R+ F GGS + I G ++ ++ G++ E+ + + + A ERD SG
Sbjct: 147 SVPMGGMMVRQA-FAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSG 205
>gi|600387|emb|CAA47753.1| proteosome subunit [Arabidopsis thaliana]
Length = 230
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 87/214 (40%), Gaps = 16/214 (7%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
N+GG VA+AG + I D + G ++ +K+H+++ L + G AD +
Sbjct: 20 NNGGTCVAIAGSDYCVIAADTRMSTGYSILSRDYSKIHKLADRAVLSSSGFQADVKALQK 79
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y +S A + S LY ++ P + ++ G + G+ + T
Sbjct: 80 VLKSRHLIYQHQHNKQMSCPAMAQLLSNTLYFKRFF-PYYAFNVLGGL-DEEGKGCVFTY 137
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQ---PGLSPEQ----------LFEVCSQVV 170
D G R + A GS +IM ++ + P L P+Q ++ V
Sbjct: 138 DAVGSYER-VGYGAQGSGSTLIMPFLDNQLKSPSPLLLPKQDSNTPLSEAEAVDLVKTVF 196
Query: 171 IQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A ERD +G + +++ D + + R D
Sbjct: 197 ASATERDIYTGDKLEIMILKADGIKTELMDLRKD 230
>gi|303391190|ref|XP_003073825.1| proteasome subunit beta type-6 [Encephalitozoon intestinalis ATCC
50506]
gi|303302973|gb|ADM12465.1| proteasome subunit beta type-6 [Encephalitozoon intestinalis ATCC
50506]
Length = 202
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 71/176 (40%), Gaps = 7/176 (3%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G I+A+ + IG D G + + +K+ ++ ++++ G AD +E +
Sbjct: 9 GTTIIAIKYDDGVLIGADSRTSMGAYIPSRVTDKLTPITNNIFVCRSGSSADTQMISEYL 68
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
+ Y E S A +AS +Y +P + +I Y D +F +L
Sbjct: 69 KMYLTLYSHLESSIPLVQRAATLASKIIYE----NPSLLAGLIVAGYDDKPRIFNISL-- 122
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
G + D+ GGS I G + W+ G+S E+ V A RD SG
Sbjct: 123 -GGTLVECDWAIGGSGSAFIYGYCDVNWKNGMSLEEGIGFIKNAVSCAINRDNASG 177
>gi|440909600|gb|ELR59489.1| Proteasome subunit beta type-9 [Bos grunniens mutus]
Length = 219
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 73/179 (40%), Gaps = 5/179 (2%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ +G D + G+ + +K+ + H+Y G AD A
Sbjct: 17 VHTGTTIMAVEFDGGVVVGSDSRVSAGEAVVNRVFDKLSPLHQHIYCALSGSAADAQAIA 76
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLST 122
+ + + + P P AA K L + ++AG+ G T
Sbjct: 77 DMAAYQLELHGMELEEP--PLVLAAANVVRNITYKYREDLSAHLMVAGWDQREGGQVYGT 134
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
M+G R+ F GGS I G ++ ++PG+SPE+ + + A +RD SG
Sbjct: 135 --MSGMLIRQP-FAIGGSGSTYIYGYVDAAYKPGMSPEECRRFTTNAIALAMKRDGSSG 190
>gi|426352667|ref|XP_004043831.1| PREDICTED: proteasome subunit beta type-9 [Gorilla gorilla gorilla]
Length = 218
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 77/187 (41%), Gaps = 7/187 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ +G D + G+ + +K+ + +Y G AD A
Sbjct: 16 VHTGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVA 75
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLST 122
+ T + + + P P AA + K L + ++AG+ G T
Sbjct: 76 DMATYQLELHGIELEEP--PLVLAAANVVRNISYKYREDLSAHLMVAGWDQREGGQVYGT 133
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGW 182
L G TR+ F GGS I G ++ ++PG+SPE+ + + A RD S
Sbjct: 134 L--GGMLTRQP-FAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTTDAIALAMSRDGSS-- 188
Query: 183 GATVYVV 189
G +Y+V
Sbjct: 189 GGVIYLV 195
>gi|390960707|ref|YP_006424541.1| proteasome subunit beta 1 [Thermococcus sp. CL1]
gi|390519015|gb|AFL94747.1| proteasome subunit beta 1 [Thermococcus sp. CL1]
Length = 203
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 71/184 (38%), Gaps = 5/184 (2%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G V + K+ + D G+ ++E KV + HL L G D + +
Sbjct: 7 GTTTVGIVCKDGVVLAADRRASLGNMVLSENVTKVFWIDDHLALAGAGSVGDILSLVRLL 66
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
Y A +S A + S L+ + P F +IAG G L ++DM
Sbjct: 67 RAEAKLYRARVGKEMSVKALATLTSNVLHGNRFM-PYFGWFLIAGHDEKPG---LYSIDM 122
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
AG T + F A GS I E ++ + E ++ + + A RD +G G T
Sbjct: 123 AGGVT-EDKFTAAGSGMEFAFSILEENYREDMPLEGGVKLALRAIKAATRRDVFTGGGVT 181
Query: 186 VYVV 189
+ V
Sbjct: 182 LVTV 185
>gi|77735723|ref|NP_001029560.1| proteasome subunit beta type-9 precursor [Bos taurus]
gi|108860909|sp|Q3SZC2.1|PSB9_BOVIN RecName: Full=Proteasome subunit beta type-9; AltName:
Full=Proteasome subunit beta-1i; Flags: Precursor
gi|63169163|gb|AAY34699.1| proteosome subunit beta type 9 [Bos taurus]
gi|74267808|gb|AAI02964.1| Proteasome (prosome, macropain) subunit, beta type, 9 (large
multifunctional peptidase 2) [Bos taurus]
gi|296474568|tpg|DAA16683.1| TPA: proteasome subunit beta type-9 precursor [Bos taurus]
Length = 219
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 73/179 (40%), Gaps = 5/179 (2%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ +G D + G+ + +K+ + H+Y G AD A
Sbjct: 17 VHTGTTIMAVEFDGGVVVGSDSRVSAGEAVVNRVFDKLSPLHQHIYCALSGSAADAQAIA 76
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLST 122
+ + + + P P AA K L + ++AG+ G T
Sbjct: 77 DMAAYQLELHGMELEEP--PLVLAAANVVRNITYKYREDLSAHLMVAGWDQREGGQVYGT 134
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
M+G R+ F GGS I G ++ ++PG+SPE+ + + A +RD SG
Sbjct: 135 --MSGMLIRQP-FAIGGSGSTYIYGYVDAAYKPGMSPEECRRFTTNAIALAMKRDGSSG 190
>gi|258564394|ref|XP_002582942.1| proteasome component PRE3 [Uncinocarpus reesii 1704]
gi|237908449|gb|EEP82850.1| proteasome component PRE3 [Uncinocarpus reesii 1704]
Length = 244
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 78/195 (40%), Gaps = 7/195 (3%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G +I+A+ K+ +G D G + +K+ Q+ ++ G AD A+ +
Sbjct: 43 GTSIMAINFKDGVILGADSRTTTGAYIANRVTDKLTQVHDTIWCCRSGSAADTQAVADIV 102
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGF-YPDSGEVFLSTLD 124
Y P + T AA+ Y K L IIAG+ + G+V+ L
Sbjct: 103 RYHLGMYGVVYDQPPTTQTAAALFQELCYDNK--DMLSAGIIIAGYDHRHGGQVYSIPL- 159
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G K + GGS I G ++ W+ G+S + E + +A + D SG G
Sbjct: 160 --GGSLHKQAYAIGGSGSTYIYGYCDAHWREGMSEAEGVEFVKGALQEAIKWDGSSG-GV 216
Query: 185 TVYVVEPDKVTIRKI 199
VV K +R +
Sbjct: 217 IRLVVLTAKGAVRHL 231
>gi|194884398|ref|XP_001976249.1| GG20111 [Drosophila erecta]
gi|195484013|ref|XP_002090526.1| GE13168 [Drosophila yakuba]
gi|190659436|gb|EDV56649.1| GG20111 [Drosophila erecta]
gi|194176627|gb|EDW90238.1| GE13168 [Drosophila yakuba]
Length = 201
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 77/190 (40%), Gaps = 9/190 (4%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
++ + G + + D + + E +NK+H++S +L + G D QF E ++
Sbjct: 4 LLGIKGPDFVMLAADTTHARSIIVMKEDQNKIHKVSDNLLISTVGESGDTEQFTEFVSKN 63
Query: 69 TANYVASEQSPISPDTFAAIASWEL--YARKLTSPLFINPIIAGFYPDSGE--VFLSTLD 124
A Y +SP A L Y R T P + +AG+ P+ G F+ L
Sbjct: 64 IALYKMRNGYDLSPHASAHFTRKNLAEYLRSRT-PYQVFMFVAGYDPNEGPELTFIDYL- 121
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
++ G I + +W P ++ + ++V + + + +R +
Sbjct: 122 ---ANALPVNYAGHGYGAIFASSIYDRYWHPNITQAEAYDVFKKCIAEIQKRLVVNLKNF 178
Query: 185 TVYVVEPDKV 194
TV VV+ D V
Sbjct: 179 TVAVVDKDGV 188
>gi|85111648|ref|XP_964037.1| proteasome subunit beta type 7 precursor [Neurospora crassa OR74A]
gi|28925797|gb|EAA34801.1| proteasome subunit beta type 7 precursor [Neurospora crassa OR74A]
gi|336465548|gb|EGO53788.1| proteasome subunit beta type 7 precursor [Neurospora tetrasperma
FGSC 2508]
gi|350295152|gb|EGZ76129.1| proteasome subunit beta type 7 precursor [Neurospora tetrasperma
FGSC 2509]
Length = 275
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 80/194 (41%), Gaps = 15/194 (7%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
DGG ++A D G + K+H ++P+++ G AD +F
Sbjct: 38 DGGVVIA----------ADTRATSGPIVADKNCEKLHFIAPNIWCAGAGTAAD-TEFTTA 86
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ + + + S + P + + + + + ++AG P +F T+
Sbjct: 87 L-ISSQLELHSLSTGRKPRVVTCMTMLKQHLFRYQGHIGAYLVVAGVDPTGTHLF--TVH 143
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G T K +V GS M + E+ W+P L+ E+ ++CSQ + D SG
Sbjct: 144 AHG-STDKLPYVTMGSGSLAAMSVFETQWKPQLNKEEAMKLCSQAIEAGIWNDLGSGSNV 202
Query: 185 TVYVVEPDKVTIRK 198
+ V+ P+K T+ +
Sbjct: 203 DLAVITPEKTTLHR 216
>gi|403412828|emb|CCL99528.1| predicted protein [Fibroporia radiculosa]
Length = 252
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 84/199 (42%), Gaps = 18/199 (9%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG I+A+AG + I D +G Y KV +++ L G ADG F +K
Sbjct: 20 NGGTILAIAGADFTVIAGDTRQSEGYSIQTRYAPKVFRLTERAVLAVNGFAADGNMFVKK 79
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPD-SGEVFLSTL 123
+ R Y + + A + LYA++ P ++ I+ G D SG V+ +
Sbjct: 80 VKQRLEWYRHAHAKEMPLRAIARLIQTMLYAQRFF-PYYVYNILGGIEEDGSGAVY--SF 136
Query: 124 DMAGCETRKTDFVAGGSAQNMIMG-IGESFWQPGLSPEQ---------LFEVCSQVV--- 170
D G R+ A G+AQ+++ + + +P L +V S V+
Sbjct: 137 DPVGSYEREA-CRAAGAAQSLVQPFLDNQIYFKNQTPAAGSSHPTHLPLNDVLSIVIDSF 195
Query: 171 IQACERDTKSGWGATVYVV 189
A ER + G G +YVV
Sbjct: 196 TSATERHIEVGDGLEIYVV 214
>gi|396081771|gb|AFN83386.1| 20S proteasome subunit beta type-1 [Encephalitozoon romaleae
SJ-2008]
Length = 289
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 90/211 (42%), Gaps = 18/211 (8%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYE-NKVHQMSPHLYLINPGLCADGMQFA 62
++ G +V + + IG D D I E K+ Q+ L+L G AD +
Sbjct: 87 DNSGTVVCLRQDDFIVIGGD-TRHSSDMIINSREMTKIFQIGD-LFLTGTGFYADSHEVY 144
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLST 122
KM Y + I+ + A + S LY+++ P + +++GF ++G ++ +
Sbjct: 145 VKMAYEIRQYEV--EGSINVHSAANLLSKILYSKRFF-PYYSYCVLSGF--ENGRPYVYS 199
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGESF-----W----QPGLSPEQLFEVCSQVVIQA 173
D G T + GS ++MI + +SF W Q LS E + ++ A
Sbjct: 200 YDPVGSFESVT-CICNGSGRSMIQPLLDSFVSKKNWNNAGQAQLSQEDCVRLITKAFNAA 258
Query: 174 CERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD K+ VYVV ++V + R D
Sbjct: 259 AERDVKTKDNLEVYVVRENEVERKVFPLRRD 289
>gi|426237420|ref|XP_004012658.1| PREDICTED: proteasome subunit beta type-6 [Ovis aries]
Length = 239
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 77/180 (42%), Gaps = 6/180 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ +G D G + +K+ + ++ G AD A
Sbjct: 31 VSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVA 90
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSGEVFLS 121
+ +T + + P P A + ++ + L IIAG+ P + G+V+
Sbjct: 91 DAVTYQLGFHSIELNEP--PLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVY-- 146
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
++ M G R+ F GGS + I G ++ ++ G++ E+ + + + A ERD SG
Sbjct: 147 SVPMGGMMVRQP-FAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSG 205
>gi|224473831|gb|ACN49170.1| antigen processing proteasome-associated protein [Oryzias
luzonensis]
Length = 216
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 80/189 (42%), Gaps = 9/189 (4%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G I+A+ +G D + GD + NK+ + +Y G AD AE +
Sbjct: 17 GTTIIAIEFNGGVVLGSDSRVSAGDSVVNRVMNKLSPLHDKIYCALSGSAADAQTIAEMV 76
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGF-YPDSGEVFLSTLD 124
+ V S + P +A + + K L + I+AG+ D G+VF +
Sbjct: 77 NYQLD--VHSLEIGEDPQVRSAATLVKNISYKYKEELSAHLIVAGWDRRDGGQVFAT--- 131
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ G TR+ F GGS + + G ++ ++ G++ E+ + + A RD S G
Sbjct: 132 LGGLLTRQP-FAIGGSGSSYVYGFVDAEYRRGMTKEECQKFVVNTLALAMNRDGSS--GG 188
Query: 185 TVYVVEPDK 193
Y+V D+
Sbjct: 189 VAYIVTIDE 197
>gi|448637201|ref|ZP_21675577.1| proteasome subunit alpha [Haloarcula sinaiiensis ATCC 33800]
gi|445764748|gb|EMA15892.1| proteasome subunit alpha [Haloarcula sinaiiensis ATCC 33800]
Length = 230
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 77/193 (39%), Gaps = 9/193 (4%)
Query: 6 GGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
G V ++ ++ I D + G F + KV Q+ P + G F
Sbjct: 35 GTTTVGLSTEDGVIIATDRRASLGGRFVSNKQVQKVEQIHPTAAMTLVGSVGGAQSFIRS 94
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLF-INPIIAGFYPDSGEVFLSTL 123
+ Y P+S A +A +AR P F INPI+ G + V+ ++
Sbjct: 95 LRAEADLYEVRRDEPLSIHALATLAGN--FARG--GPYFAINPIVGGVDEEGSHVY--SV 148
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWG 183
D AG + D+ GS + G E + G+S + ++ + V A ERDT SG G
Sbjct: 149 DPAGG-VLEDDYTVTGSGTMVATGTIEGQYDHGMSLSEARDLAIRAVNAAAERDTGSGNG 207
Query: 184 ATVYVVEPDKVTI 196
+ + + V I
Sbjct: 208 VVLAEITDEGVEI 220
>gi|55378523|ref|YP_136373.1| proteasome subunit alpha [Haloarcula marismortui ATCC 43049]
gi|74552784|sp|Q5V1D5.1|PSB2_HALMA RecName: Full=Proteasome subunit beta 2; AltName: Full=20S
proteasome beta subunit 2; AltName: Full=Proteasome core
protein PsmB 2; Flags: Precursor
gi|55231248|gb|AAV46667.1| proteasome subunit alpha [Haloarcula marismortui ATCC 43049]
Length = 230
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 77/193 (39%), Gaps = 9/193 (4%)
Query: 6 GGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
G V ++ ++ I D + G F + KV Q+ P + G F
Sbjct: 35 GTTTVGLSTEDGVIIATDRRASLGGRFVSNKQVQKVEQIHPTAAMTLVGSVGGAQSFIRS 94
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLF-INPIIAGFYPDSGEVFLSTL 123
+ Y P+S A +A +AR P F INPI+ G + V+ ++
Sbjct: 95 LRAEADLYEVRRDEPLSIHALATLAGN--FARG--GPYFAINPIVGGVDEEGSHVY--SV 148
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWG 183
D AG + D+ GS + G E + G+S + ++ + V A ERDT SG G
Sbjct: 149 DPAGG-VLEDDYTVTGSGTMVATGTIEGQYDHGMSLSEARDLAIRAVNAAAERDTGSGNG 207
Query: 184 ATVYVVEPDKVTI 196
+ + + V I
Sbjct: 208 VVLAEITDEGVEI 220
>gi|346716138|ref|NP_001138398.2| proteasome subunit beta type-6 [Sus scrofa]
Length = 241
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 77/180 (42%), Gaps = 6/180 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ +G D G + +K+ + ++ G AD A
Sbjct: 33 VSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVA 92
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSGEVFLS 121
+ +T + + P P A + ++ + L I+AG+ P + G+V+
Sbjct: 93 DAVTYQLGFHSIELNEP--PLVHTAASLFKEMCYRYREDLMAGIIVAGWDPQEGGQVY-- 148
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
++ M G R+ F GGS + I G ++ ++ G++ E+ + + + A ERD SG
Sbjct: 149 SVPMGGMMVRQA-FAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSG 207
>gi|213401303|ref|XP_002171424.1| proteasome component C5 [Schizosaccharomyces japonicus yFS275]
gi|211999471|gb|EEB05131.1| proteasome component C5 [Schizosaccharomyces japonicus yFS275]
Length = 193
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 65/143 (45%), Gaps = 2/143 (1%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
+ +GG IV +AG++ I D V G + +VH++ L L G AD +
Sbjct: 10 VQNGGTIVGIAGEDFSIIAGDTRNVNGYNINTRFSPRVHEVGDKLILGATGFEADALTLV 69
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLST 122
+++ R Y + + +SP + + + LY ++ P ++ ++AG + G L +
Sbjct: 70 KRIRQRIDLYHDNHKRIMSPSSCSRMVQTMLYGKRFF-PYYVYTLVAGL-DEKGVGALYS 127
Query: 123 LDMAGCETRKTDFVAGGSAQNMI 145
D G R+ AG +A M+
Sbjct: 128 FDPVGSYEREWCRAAGSAANFML 150
>gi|167393146|ref|XP_001740446.1| proteasome subunit beta type-1 [Entamoeba dispar SAW760]
gi|165895460|gb|EDR23141.1| proteasome subunit beta type-1, putative [Entamoeba dispar SAW760]
Length = 221
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/187 (18%), Positives = 77/187 (41%), Gaps = 8/187 (4%)
Query: 7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMT 66
G V + G++ + D + + + ++K++ ++ G+ AD + +++
Sbjct: 24 GTCVVIKGEDFVVVASDTRMSRDYMILTRNDSKIYPLTSKCIFTGSGMRADMKELTDQIK 83
Query: 67 LRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMA 126
NY +S ++ A + S LY+ + P + ++AG G+ D
Sbjct: 84 AHIKNYKYENGKEMSTESVAQVLSNTLYSHRFF-PYYSFSLLAGI-NSKGKAVTYNYDAV 141
Query: 127 GC-ETRKTDFVAGGSAQNMIMGIGESFWQPGLSP---EQLFEVCSQVVIQACERDTKSGW 182
G E RK + GS + + + +S + P ++ + V+ ACERD +G
Sbjct: 142 GSFEERK--YSCSGSGEELAYPLLDSLLKDRTEPLGEQEAINIARDVMTSACERDIHTGD 199
Query: 183 GATVYVV 189
+ ++
Sbjct: 200 NVEIVIL 206
>gi|154331019|ref|XP_001561949.1| putative 20S proteasome beta 6 subunit [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134059271|emb|CAM36970.1| putative 20S proteasome beta 6 subunit [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 333
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 86/213 (40%), Gaps = 16/213 (7%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEY--ENKVHQMSPHLYLINPGLCADGMQF 61
++GG A+AG N F + + G+F + E+K+ Q++PH Y+ + G+ AD +Q
Sbjct: 125 DNGGTTAAIAG-NDFVLLAGDTRLNGNFCLHTRHDESKIFQLTPHTYMASNGMQADRLQL 183
Query: 62 AEKMTLRTANYVASEQSPI-SPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFL 120
+ + R Y + + S + A + S LY R+ P + +I G + G
Sbjct: 184 QQLLKYRIKWYQYNNGGKVPSTKSIAQLLSTVLYHRRFF-PYYTFNMIVGL-DEEGHGVC 241
Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQ---------PGLSPEQLFEVCSQVVI 171
+ D G T + GSA + + + + +S E+ +
Sbjct: 242 YSYDAVG-STEPLLYGTRGSAASFVEPLLDCLINRQHMTCQAPSEMSKEEALVMLKNAFT 300
Query: 172 QACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A ERD +G + + D V A R D
Sbjct: 301 GAAERDIYTGDSVSFITITKDGVQQESFALRKD 333
>gi|77735687|ref|NP_001029541.1| proteasome subunit beta type-6 precursor [Bos taurus]
gi|108860907|sp|Q3MHN0.1|PSB6_BOVIN RecName: Full=Proteasome subunit beta type-6; Flags: Precursor
gi|75948245|gb|AAI05177.1| Proteasome (prosome, macropain) subunit, beta type, 6 [Bos taurus]
gi|296476732|tpg|DAA18847.1| TPA: proteasome subunit beta type-6 precursor [Bos taurus]
Length = 239
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 77/180 (42%), Gaps = 6/180 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ +G D G + +K+ + ++ G AD A
Sbjct: 31 VSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVA 90
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSGEVFLS 121
+ +T + + P P A + ++ + L IIAG+ P + G+V+
Sbjct: 91 DAVTYQLGFHSIELNEP--PLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVY-- 146
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
++ M G R+ F GGS + I G ++ ++ G++ E+ + + + A ERD SG
Sbjct: 147 SVPMGGMMVRQP-FAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSG 205
>gi|367032140|ref|XP_003665353.1| hypothetical protein MYCTH_2308969 [Myceliophthora thermophila ATCC
42464]
gi|347012624|gb|AEO60108.1| hypothetical protein MYCTH_2308969 [Myceliophthora thermophila ATCC
42464]
Length = 229
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 77/182 (42%), Gaps = 10/182 (5%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
+N G +I+A+ K+ +G D G + +K+ Q+ ++ G AD A
Sbjct: 26 VNLGTSIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTQVHDTIWCCRSGSAADTQAVA 85
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARK--LTSPLFINPIIAGF-YPDSGEVF 119
+ + + + + P + T AAI YA K LT+ L IIAG+ G+V+
Sbjct: 86 DIVKYQLELFAMTSGKPPTTQTAAAIFQEICYANKDRLTAGL----IIAGWDERHGGQVY 141
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
L G K + GGS I G ++ W+ G+ + + + +A + D
Sbjct: 142 SIPL---GGSLHKQPYAIGGSGSTYIYGFCDANWREGMEEAEAVSFVKEALKEAIKWDGS 198
Query: 180 SG 181
SG
Sbjct: 199 SG 200
>gi|50304199|ref|XP_452049.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641181|emb|CAH02442.1| KLLA0B11660p [Kluyveromyces lactis]
Length = 195
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 81/190 (42%), Gaps = 4/190 (2%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
++ + K+ + + +G + + ++K Q+ PH + G D +QFAE +
Sbjct: 4 LLGIRVKDSVILASSKAVTRGISILKDSDDKTRQLLPHTLMSFSGEAGDTVQFAEYIQAN 63
Query: 69 TANYVASEQSPISPDTFAAIASWELYARKLTS--PLFINPIIAGFYPDSGEVFLSTLDMA 126
Y+ E +SP ++ EL A+ L S P +N +I G+ + + L +D
Sbjct: 64 MQLYLIRENYELSPHAASSFVRTEL-AKSLRSRKPFQVNVLIGGYDTKNEKAELYQIDYL 122
Query: 127 GCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATV 186
G + + + A G A + + ++ L+ ++ + Q V + R G V
Sbjct: 123 GTKV-ELPYAAHGYAGFYTFSLLDRHYREDLTVDEALGLLKQCVQELELRMPVDFKGVIV 181
Query: 187 YVVEPDKVTI 196
+V+ D V +
Sbjct: 182 KIVDKDGVRV 191
>gi|440897065|gb|ELR48837.1| Proteasome subunit beta type-6, partial [Bos grunniens mutus]
Length = 232
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 77/180 (42%), Gaps = 6/180 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ +G D G + +K+ + ++ G AD A
Sbjct: 24 VSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVA 83
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSGEVFLS 121
+ +T + + P P A + ++ + L IIAG+ P + G+V+
Sbjct: 84 DAVTYQLGFHSIELNEP--PLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVY-- 139
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
++ M G R+ F GGS + I G ++ ++ G++ E+ + + + A ERD SG
Sbjct: 140 SVPMGGMMVRQP-FAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSG 198
>gi|241954356|ref|XP_002419899.1| proteasome component, putative [Candida dubliniensis CD36]
gi|223643240|emb|CAX42114.1| proteasome component, putative [Candida dubliniensis CD36]
Length = 245
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/219 (21%), Positives = 94/219 (42%), Gaps = 21/219 (9%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG ++ +AG++ + D V+G + YE+K+H + + + G ADG+ +
Sbjct: 30 DNGGTVLGIAGEDFAVLAGDTRQVEGYSIQSRYESKIHDVGDDILMTANGFAADGIALID 89
Query: 64 KMTLRTANY-VASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLST 122
+ Y + ++ + A LY ++L P +++ +IAG + G+ + +
Sbjct: 90 RFKQSLIWYKFDNNGKKLAIKSAARYIQQLLYGKRLF-PYYVSTLIAGL-DEEGKGAVYS 147
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGE------SFWQPG-----------LSPEQLFEV 165
D G R+ AGG+A ++IM + + + PG L+ E++ ++
Sbjct: 148 YDPVGSYEREQ-CRAGGAAASLIMPFLDNQVNFKNQFVPGTDGKEKKPLKYLTLEEVIQL 206
Query: 166 CSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A ER G G + +V D + + D
Sbjct: 207 VRDAFTSAGERHIYVGDGLEIKIVTKDGIRTEYYPLKRD 245
>gi|558528|dbj|BAA06098.1| proteasome subunit Y [Homo sapiens]
Length = 239
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 74/179 (41%), Gaps = 4/179 (2%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ +G D G + +K+ + ++ G AD A
Sbjct: 31 VSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVA 90
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLST 122
+ +T + + P P A + ++ + L IIAG+ P G S
Sbjct: 91 DAVTYQLGFHSIELNEP--PLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQGYS- 147
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
+ M G R++ F GGS + I G ++ ++ G++ E+ + + + A ERD SG
Sbjct: 148 VPMGGMMVRQS-FAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSG 205
>gi|403268777|ref|XP_003926443.1| PREDICTED: proteasome subunit beta type-9 [Saimiri boliviensis
boliviensis]
Length = 219
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 75/187 (40%), Gaps = 7/187 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ +G D + G + +K+ + +Y G AD A
Sbjct: 17 VHTGTTIMAVEFDGGVVVGSDSRVSAGQAVVNRVFDKLSPLHERIYCALSGSAADAQAVA 76
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLST 122
+ + + + P P AA + K L + ++AG+ G T
Sbjct: 77 DMAAYQLELHGIELEEP--PLVLAAANVVRNISYKYREDLSAHLLVAGWDQREGGQVYGT 134
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGW 182
L G TR+ F GGS I G +S ++PG+SPE+ + + A RD S
Sbjct: 135 L--GGMLTRQP-FAIGGSGSTYIYGYVDSVYKPGMSPEECRRFTTDAIALAMSRDGSS-- 189
Query: 183 GATVYVV 189
G +Y+V
Sbjct: 190 GGVIYLV 196
>gi|261201492|ref|XP_002627146.1| proteasome component Pre1 [Ajellomyces dermatitidis SLH14081]
gi|239592205|gb|EEQ74786.1| proteasome component Pre1 [Ajellomyces dermatitidis SLH14081]
gi|239611637|gb|EEQ88624.1| proteasome component Pre1 [Ajellomyces dermatitidis ER-3]
gi|327348351|gb|EGE77208.1| proteasome subunit beta type [Ajellomyces dermatitidis ATCC 18188]
Length = 182
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 7/146 (4%)
Query: 27 VQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFA 86
++G + ++K ++S H + G D +QFAE + Y +S +SP A
Sbjct: 1 MRGATILKASDDKTRELSKHTLMAFSGEAGDTVQFAEYIQANAQLYSMRNESELSPSAVA 60
Query: 87 AIASWELYARKLTS--PLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNM 144
+ EL AR L S P +N ++ G P + + L LD + A G AQ
Sbjct: 61 SFVRGEL-ARSLRSRRPYTVNLLLGGVDPLTEKPSLYWLDYLAA-LAPVPYAAHGYAQYY 118
Query: 145 IMGIGESFWQPGLSPEQ---LFEVCS 167
+ I + P ++ EQ L E+C+
Sbjct: 119 CLSILDKHHHPDITLEQGLKLLEMCT 144
>gi|336369489|gb|EGN97830.1| hypothetical protein SERLA73DRAFT_182590 [Serpula lacrymans var.
lacrymans S7.3]
gi|336382272|gb|EGO23422.1| hypothetical protein SERLADRAFT_469320 [Serpula lacrymans var.
lacrymans S7.9]
Length = 253
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 85/199 (42%), Gaps = 18/199 (9%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG I+A+AG + I D +G Y KV +++ L G ADG F +K
Sbjct: 21 NGGTILAIAGADFSVIAGDTRQSEGYSIQTRYAPKVFRLTDRAVLAVNGFAADGNMFVKK 80
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPD-SGEVFLSTL 123
+ R Y + + A + LYAR+ P ++ I+ G D +G V+ +
Sbjct: 81 VKQRLEWYRHAHSKDMPLRAIARLIQTMLYARRFF-PYYVYNILGGIEEDGTGAVY--SF 137
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGI--GESFWQ---PGLSPEQ-----LFEVCSQVV--- 170
D G R+ A G+AQ+++ + +++ P L L V S V+
Sbjct: 138 DPVGSYEREA-CRAAGAAQSLVQPFLDNQIYFKNQTPALGTSHPAHLPLPTVLSIVIDSF 196
Query: 171 IQACERDTKSGWGATVYVV 189
A ER + G G +YVV
Sbjct: 197 TSATERHIEVGDGLEMYVV 215
>gi|19115641|ref|NP_594729.1| 20S proteasome component beta 6 [Schizosaccharomyces pombe 972h-]
gi|17380232|sp|Q9UQY2.1|PSB6_SCHPO RecName: Full=Probable proteasome subunit beta type-6
gi|5734483|emb|CAB52716.1| 20S proteasome component beta 6 [Schizosaccharomyces pombe]
gi|6681370|dbj|BAA88692.1| catalytic subunit (C5) of proteasome [Schizosaccharomyces pombe]
Length = 225
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 90/220 (40%), Gaps = 22/220 (10%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
+ +GG VA+AG + D V G ++ +VH++ L + G AD +
Sbjct: 10 VQNGGTTVAIAGDGFAILAGDTRSVNGYNINTRFQPRVHEVGDDLVIGASGFEADALALV 69
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPD-SGEVFLS 121
+++ R Y + + +S + A + LY ++ P ++ +AG + GE++
Sbjct: 70 KRIQQRIDLYHDNHERKMSAQSCACMVRTLLYGKRFF-PYYVYTTVAGIDKEGKGEIY-- 126
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGE------SFWQPG-----------LSPEQLFE 164
+ D G R+ AGGSA N I + + + PG L E+ +
Sbjct: 127 SFDPVGSYEREW-CRAGGSAANFITPFLDNQVNLHNQYVPGSHGKERKPRRLLKLEEAMK 185
Query: 165 VCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
+ + A ER + G V ++ + V R I + D
Sbjct: 186 ITTDAFTSAGERHIEVGDSVLVKIITKEGVETRIIPLKKD 225
>gi|303390057|ref|XP_003073260.1| 20S proteasome subunit beta type-1 [Encephalitozoon intestinalis
ATCC 50506]
gi|303302405|gb|ADM11900.1| 20S proteasome subunit beta type-1 [Encephalitozoon intestinalis
ATCC 50506]
Length = 287
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 78/176 (44%), Gaps = 16/176 (9%)
Query: 38 NKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARK 97
+K+ +M L L G AD + KMT Y P+S + A + S LY+R+
Sbjct: 119 SKIFRMGNFL-LTGTGFYADTYEVYRKMTDEILQYEV--DGPMSIHSSANLLSKILYSRR 175
Query: 98 LTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESF----- 152
P + ++GF + G+ +L D G T V GS ++MI + +SF
Sbjct: 176 FF-PYYSFCTLSGF--EKGKAYLYQYDPLGSYDLTT-CVCKGSGRSMIQPLLDSFIDKKN 231
Query: 153 WQPGLSPEQLFEVCSQVVIQA----CERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
W + E C ++V++A ERD K+ +YVV ++T + + R D
Sbjct: 232 WNNASDAQISQEDCIRLVVKAFNSVAERDIKTKDNLEIYVVREHELTHQILPLRRD 287
>gi|429217521|ref|YP_007175511.1| proteasome endopeptidase complex subunit beta [Caldisphaera
lagunensis DSM 15908]
gi|429134050|gb|AFZ71062.1| proteasome endopeptidase complex, archaeal, beta subunit
[Caldisphaera lagunensis DSM 15908]
Length = 210
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 74/184 (40%), Gaps = 5/184 (2%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G V KN + D G + K+ +++ + + GL AD A+ +
Sbjct: 15 GTTTVGFITKNAVILAADKRATAGTLIASRTVKKIVKITDYAAMTIAGLVADAQMLADAI 74
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
Y + ++ A + + L++ K P + I+ G+ E L LD
Sbjct: 75 REEARLYETMNKRKLTVKGMATLLANVLFSTKY-YPYLVQLIVGGY---DTEPRLYNLDY 130
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
G T + + GS + +G+ E ++P LS E+ + ++ + A RD+ +G G
Sbjct: 131 FGSITEE-KMTSTGSGSPVALGVLEKDYRPDLSLEEAMNLAAKAIKVAIMRDSATGDGVD 189
Query: 186 VYVV 189
V +
Sbjct: 190 VIAI 193
>gi|295395909|ref|ZP_06806094.1| proteasome, beta subunit [Brevibacterium mcbrellneri ATCC 49030]
gi|294971182|gb|EFG47072.1| proteasome, beta subunit [Brevibacterium mcbrellneri ATCC 49030]
Length = 265
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 74/202 (36%), Gaps = 20/202 (9%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G IVA + + D G+ + KVH + G ++
Sbjct: 46 GTTIVAFKTERGVLMAGDRRATMGNLIASHTIQKVHAADSASVIGIAGTAGLALELIRLF 105
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFIN-----------PIIAGFYPD 114
L +Y E +P+S E A +L S L N P+ AG P
Sbjct: 106 QLELEHYEKIEGTPLS---------LEGKANRLASMLRGNLGLALQGLAVVPLFAGTVPG 156
Query: 115 SGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQAC 174
+ L + D+ G + ++ DF + GS G + W+P L ++ V Q + A
Sbjct: 157 TTSGALYSFDVTGGKYQELDFHSIGSGAGFARGALKKLWKPQLDDDEAVRVAVQTLYDAA 216
Query: 175 ERDTKSGWGATVYVVEPDKVTI 196
+ D+ +G V + P +T+
Sbjct: 217 DDDSATGGPDLVRNIAPQVMTV 238
>gi|169869498|ref|XP_001841312.1| proteasome component Pre1 [Coprinopsis cinerea okayama7#130]
gi|116497590|gb|EAU80485.1| proteasome component Pre1 [Coprinopsis cinerea okayama7#130]
Length = 194
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 74/188 (39%), Gaps = 8/188 (4%)
Query: 11 AMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTA 70
A+ GK + D + + E+K+ + PHL + G D +QFAE
Sbjct: 6 AITGKGYTIVAADTTAARSIVKMKIDEDKIKVLGPHLLMAYSGEPGDTVQFAEYAERNIR 65
Query: 71 NYVASEQSPISPDTFAAIASW--ELYARKLTS--PLFINPIIAGFYPDSGEVFLSTLDMA 126
Y + P +A ASW A L S P +N ++ G+ + + L +D
Sbjct: 66 LYQIRNTYALRP---SAAASWIRRALADSLRSRNPYSVNLLLGGYDTATHDPHLYWIDYL 122
Query: 127 GCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATV 186
G TR F A G + + + + P S E+ E + + + +R S V
Sbjct: 123 GTITR-VPFAAHGYGAYFALSLLDRYHNPEASLEEGLETLKRCIDEVAKRLVVSPGKYKV 181
Query: 187 YVVEPDKV 194
VV+ D V
Sbjct: 182 KVVDKDGV 189
>gi|21465649|pdb|1IRU|H Chain H, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
gi|21465663|pdb|1IRU|V Chain V, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 205
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 75/174 (43%), Gaps = 6/174 (3%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
I+A+ +G D G + +K+ + ++ G AD A+ +T +
Sbjct: 3 IMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQ 62
Query: 69 TANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSGEVFLSTLDMAG 127
+ P P A + ++ + L IIAG+ P + G+V+ ++ M G
Sbjct: 63 LGFHSIELNEP--PLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVY--SVPMGG 118
Query: 128 CETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
R++ F GGS + I G ++ ++ G++ E+ + + + A ERD SG
Sbjct: 119 MMVRQS-FAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSG 171
>gi|170091950|ref|XP_001877197.1| 20S proteasome subunit [Laccaria bicolor S238N-H82]
gi|164648690|gb|EDR12933.1| 20S proteasome subunit [Laccaria bicolor S238N-H82]
Length = 234
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 78/192 (40%), Gaps = 4/192 (2%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
+N G +I+A+ + IG D G + +K+ + +Y G AD A
Sbjct: 9 VNLGTSIMAVQFEGGVVIGADSRTTTGSYIANRVTDKLTHVHDRIYCCRSGSAADTQAVA 68
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLST 122
+ + + + +P S T AA+ Y K L I+AG+ D+G +
Sbjct: 69 DIVHYYLQMFTQTSGAPPSVHTAAALFQKLCYENK--DALSAGIIVAGWDKDAGPSVYN- 125
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGW 182
+ + G R+ + GGS + G ++ ++ G E+ E + A RD SG
Sbjct: 126 IPVGGGMFRQP-WAIGGSGSTYVYGYCDATYKEGWGREETVEFVRNTLALAMSRDGSSGG 184
Query: 183 GATVYVVEPDKV 194
+ V+ DKV
Sbjct: 185 VIRMCVITEDKV 196
>gi|159474370|ref|XP_001695298.1| 20S proteasome beta subunit A1 [Chlamydomonas reinhardtii]
gi|158275781|gb|EDP01556.1| 20S proteasome beta subunit A1 [Chlamydomonas reinhardtii]
Length = 212
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 71/177 (40%), Gaps = 6/177 (3%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G I+A+ + D G++ +K+ + ++Y + G AD A +
Sbjct: 2 GTTIIAVTFNGGVILAADSRTSTGNYIANRVTDKITPLCDNVYTLRSGSAADTQAIAGYV 61
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGF-YPDSGEVFLSTLD 124
A + A E I+ T A + Y K L I+AG+ G+VF +L
Sbjct: 62 QHFIAQHQAEEGEHINVKTAANLVKMMAYNNK--DNLQAGLIVAGYDKHGGGQVFSISL- 118
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
G +T F GS I G + +W+ G+S ++ + ++ + A D SG
Sbjct: 119 --GGTITETSFAMSGSGSTYINGFVDKYWREGMSEQEAMDFVTKALRYAMTWDASSG 173
>gi|45184842|ref|NP_982560.1| AAR019Wp [Ashbya gossypii ATCC 10895]
gi|44980451|gb|AAS50384.1| AAR019Wp [Ashbya gossypii ATCC 10895]
gi|374105759|gb|AEY94670.1| FAAR019Wp [Ashbya gossypii FDAG1]
Length = 195
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 75/163 (46%), Gaps = 10/163 (6%)
Query: 37 ENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAIASWELYAR 96
++K Q+SPH + G D +QF+E + Y+ E +SP A+ EL A+
Sbjct: 32 DDKTRQLSPHSLMSFSGEPGDAVQFSEYIQANMQLYMIRENYELSPQAQASYVRSEL-AK 90
Query: 97 KLTS--PLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQ 154
L S P +N +I G+ + + L +D G + + + A G + + + ++
Sbjct: 91 SLRSRKPFQVNVLIGGYDTRAEKPELYQIDYLGTKV-ELPYAAHGYSGFYTFSLLDHHYR 149
Query: 155 PGLSPEQ---LFEVCSQVVIQACERDTKSGWGATVYVVEPDKV 194
P ++ E+ L ++C + + + D K G V VV+ D +
Sbjct: 150 PDMTTEEGLKLLKLCVEELQRRMPIDFK---GVLVKVVDKDGI 189
>gi|2118156|pir||I49121 proteasome endopeptidase complex (EC 3.4.25.1) delta chain - mouse
gi|984940|gb|AAA75376.1| delta proteasome subunit [Mus musculus]
Length = 202
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 71/163 (43%), Gaps = 6/163 (3%)
Query: 20 IGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSP 79
+G D G + +K+ + H++ G AD + +T + + P
Sbjct: 11 LGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVTDAVTYQLGFHSIELNEP 70
Query: 80 ISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSGEVFLSTLDMAGCETRKTDFVAG 138
P A + ++ + L IIAG+ P + G+V+ ++ M G R++ F G
Sbjct: 71 --PLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVY--SVPMGGMMVRQS-FAIG 125
Query: 139 GSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
GS + I G ++ ++ G++ ++ + + + A ERD SG
Sbjct: 126 GSGSSYIYGYVDATYREGMTKDECLQFTANALALAMERDGSSG 168
>gi|300708256|ref|XP_002996311.1| hypothetical protein NCER_100618 [Nosema ceranae BRL01]
gi|239605602|gb|EEQ82640.1| hypothetical protein NCER_100618 [Nosema ceranae BRL01]
Length = 230
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 80/178 (44%), Gaps = 11/178 (6%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE-- 63
G I+A+ +G D G + + + +K+ ++S ++Y G AD A+
Sbjct: 37 GTTIMAVKYDEGVLVGADCRTSMGTYVSSRFTDKLTKISDNIYCCRSGSAADTQAIAQYV 96
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
K ++ ++++ E + AA+ + E+ + L IIAG Y S +++ +L
Sbjct: 97 KEVVQRSSFIDKEIPSVKK---AAMIAKEIIYKN--PSLLAGLIIAG-YDTSPKIYNISL 150
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
G + D+ GGS I G+ ++ ++ ++ E+ E Q + A RD SG
Sbjct: 151 ---GGTITEADWQIGGSGSAYIYGLCDTLYKDNMTLEEAIEFVKQAITCAIRRDNASG 205
>gi|320163476|gb|EFW40375.1| proteasome subunit beta type-1 [Capsaspora owczarzaki ATCC 30864]
Length = 238
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 89/218 (40%), Gaps = 27/218 (12%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN-------KVHQMSPHLYLINPGLCA 56
++GG +VA+AG+N FA+ V D ++EY K +S L + G
Sbjct: 31 SNGGTVVAVAGEN-FAV------VASDTRLSEYYGIHTRNCPKTFVLSDKTVLASCGFHG 83
Query: 57 DGMQFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSG 116
D + + + R Y + ++ A + S LY R+ P + +I G +SG
Sbjct: 84 DVLTLTKNIFTRLRKYEHQHEKTMATHAIAQMLSNTLYYRRFF-PFYTYNVIGGL-DESG 141
Query: 117 EVFLSTLDMAGCETRKTDFVAGGSAQNMIM----------GIGESFWQPGLSPEQLFEVC 166
+ + + D G R++ + A G+A ++ + + +P L+ + +
Sbjct: 142 KGAVYSYDPVGSYERES-YRAAGTASALLQPLLDNQLGYKNLAPNVPRPPLTVARAVAIV 200
Query: 167 SQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
V A ERD +G + V+ + V + R D
Sbjct: 201 KDVFAAATERDIYTGDSVDIQVITSEGVATERYELRKD 238
>gi|348538008|ref|XP_003456484.1| PREDICTED: proteasome subunit beta type-6-like [Oreochromis
niloticus]
Length = 233
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 87/200 (43%), Gaps = 10/200 (5%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ IG D G + +K+ ++ +Y G AD A
Sbjct: 30 VSTGTTIMAVEYDGGVVIGADSRTTTGAYIANRVTDKLTRIHNKIYCCRSGSAADTQAIA 89
Query: 63 EKMTLRTANYVASEQSPISPDTFAAI--ASWELYARKLTSPLFINPIIAGF-YPDSGEVF 119
E + + + P +T A + AS Y +LT+ + ++AG+ G+V+
Sbjct: 90 EIVAYQLGFHSIELDEPPLVETAANLFRASCYRYREELTAGI----LVAGWDKRKGGQVY 145
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
++ + G R+ V GGS I G ++ ++PG++ EQ E+ + + A ERD
Sbjct: 146 --SVPIGGMLVRQPVSV-GGSGSTYIYGFMDANYKPGMNKEQCMELTAAALSLAMERDGS 202
Query: 180 SGWGATVYVVEPDKVTIRKI 199
SG + + + V R I
Sbjct: 203 SGGVVRLASISEEGVERRVI 222
>gi|32401291|gb|AAP80818.1| proteasome chain protein [Griffithsia japonica]
Length = 187
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 79/175 (45%), Gaps = 9/175 (5%)
Query: 7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMT 66
G+I+A+ G + I D + + + +K+ Q+ G+ D +F+E +
Sbjct: 3 GSIIALQGADYVLIAADVSCARSIVVMKDDMDKIRQLDEGKLFAAAGVPGDVTKFSEHVQ 62
Query: 67 LRTANYVASEQSPISPDTFAAIASW---ELYARKLTSPLFINPIIAGF--YPDSGEVFLS 121
Y S +S IS T AA+A++ EL SP N II G+ P+ L
Sbjct: 63 KDVRLY--SLRSGISMST-AAVANYTRGELAHFLRRSPFQCNVIIGGYDKAPNGDGPSLY 119
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACER 176
+ D G T+ T F A G AQ ++ + +W+ G+S ++ + + + + +R
Sbjct: 120 SCDYLGTLTKLT-FAAEGYAQYFVLSTLDRYWKKGMSLDEGLDAIRKCIAEVQKR 173
>gi|269986877|gb|EEZ93154.1| Proteasome endopeptidase complex [Candidatus Parvarchaeum
acidiphilum ARMAN-4]
Length = 206
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 65/153 (42%), Gaps = 3/153 (1%)
Query: 39 KVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKL 98
KV +S + + G+ AD M Y S + D ++ S L+ ++L
Sbjct: 40 KVMAISGSIGITTAGMVADLQAMVRLMRSELTLYEIRSGSKLDTDGAVSLLSAVLFNKRL 99
Query: 99 TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLS 158
+ L I G Y + ++F ++D AG + K F GS +G+ E ++ +S
Sbjct: 100 SLNLIYGEFIVGGYDTAPKLF--SIDEAGGQG-KDKFTVTGSGGVFALGVLEGDYKDNMS 156
Query: 159 PEQLFEVCSQVVIQACERDTKSGWGATVYVVEP 191
E+ ++ + + + RD +G G + V+
Sbjct: 157 EEEAVKLAYKAISSSIRRDVYTGEGIDIAVINK 189
>gi|70987129|ref|XP_749045.1| proteasome component Pre3 [Aspergillus fumigatus Af293]
gi|66846675|gb|EAL87007.1| proteasome component Pre3, putative [Aspergillus fumigatus Af293]
gi|159123184|gb|EDP48304.1| proteasome component Pre3, putative [Aspergillus fumigatus A1163]
Length = 221
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 73/180 (40%), Gaps = 6/180 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
+N G +I+A+ K+ +G D G + +K+ Q+ ++ G AD A
Sbjct: 14 VNLGTSIMAINFKDGVILGADSRTTTGAYIANRVTDKLTQVHDTIWCCRSGSAADTQAVA 73
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSGEVFLS 121
+ ++ Y P S AA+ Y K L IIAG+ P G+V+
Sbjct: 74 DIVSYHLNMYGIVNNEPPSTQVAAALFQELCYENK--DMLSAGIIIAGYDPRHGGQVYSI 131
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
L G K + GGS I G ++ W+ ++ E+ + + +A + D SG
Sbjct: 132 PL---GGSLHKQPYAIGGSGSTYIYGYCDAHWKENMTEEEGIKFVRDALQEAIKWDGSSG 188
>gi|354547791|emb|CCE44526.1| hypothetical protein CPAR2_403290 [Candida parapsilosis]
Length = 244
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 92/219 (42%), Gaps = 21/219 (9%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG ++ +AG++ + D V+G + YE K+H + ++ + G ADG+ +
Sbjct: 29 DNGGTVLGIAGEDFAVLAGDTRQVEGYSIQSRYEPKIHNVGDNILMTANGFAADGVALLD 88
Query: 64 KMTLRTANY-VASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLST 122
K Y + + + A LY ++ P +++ +IAG + G+ + +
Sbjct: 89 KFKQAFTWYKFDNGNRKLEISSAARYIQHLLYGKRFF-PYYVSTLIAGL-DEEGKGAVYS 146
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGE------SFWQPG-----------LSPEQLFEV 165
D G R+ AGG+A ++IM + + + PG LS E++ ++
Sbjct: 147 YDPVGSYEREQ-CRAGGAAASLIMPFLDNQVNFKNQFVPGTDGKEKKPLKYLSLEEVIQL 205
Query: 166 CSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A ER G G + +V D V + D
Sbjct: 206 VRDAFNSAGERHIYVGDGLEILIVTKDGVRTEYFPLKRD 244
>gi|440796014|gb|ELR17123.1| proteasome subunit protein, putative [Acanthamoeba castellanii str.
Neff]
Length = 236
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/211 (19%), Positives = 87/211 (41%), Gaps = 13/211 (6%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG +A+ GK+ + D L G + KV +++ + G+ AD + +
Sbjct: 29 DNGGTTLALHGKDFCVVAADTRLSTGYSIHSREARKVLKLTDKCVIATAGMQADQLALHK 88
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y + P+S A + + LY+++ P + ++ G D+G + +
Sbjct: 89 LLQTRLQWYEHQHRKPMSTPAIAQMLATILYSKRFF-PFYTFNVLGGV-DDNGVGCVYSY 146
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGI--GESFW--------QPGLSPEQLFEVCSQVVIQA 173
D G R + + G+ ++ + + W +P L+ E+ + + A
Sbjct: 147 DAVGSFER-VKYSSSGTGNQLVQPLLDNQIGWKDQRATKTKPELNVEETVDFVRDIFTSA 205
Query: 174 CERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G + V++ D V K + D
Sbjct: 206 GERDIYTGDYVLIAVIDKDGVKEMKFDLKQD 236
>gi|291395993|ref|XP_002714656.1| PREDICTED: proteasome beta 8 subunit [Oryctolagus cuniculus]
Length = 276
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 84/193 (43%), Gaps = 6/193 (3%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQ 60
+ + G +A ++ + VD G + NKV +++P+L G AD Q
Sbjct: 67 IEMAHGTTTLAFKFQHGVVVAVDSRASAGSYIATIRVNKVIEINPYLLGTMSGSAAD-CQ 125
Query: 61 FAEKMTLRTAN-YVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
+ E++ + Y IS + + S ++ + L + +I G+ D
Sbjct: 126 YWERLLAKECRLYYLRNGERISVSAASKLLSNMMFQYRGMG-LSMGSMICGW--DKKGPG 182
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
L +D G T F + GS G+ +S ++P LSPE+ +++ + ++ A RD+
Sbjct: 183 LYYVDENGTRLSGTMF-STGSGNTYAYGVMDSGYRPNLSPEEAYDLGRRAIVHATHRDSY 241
Query: 180 SGWGATVYVVEPD 192
SG +Y ++ D
Sbjct: 242 SGGVVNMYHMKED 254
>gi|20129563|ref|NP_609804.1| CG17331, isoform A [Drosophila melanogaster]
gi|442628090|ref|NP_001260511.1| CG17331, isoform B [Drosophila melanogaster]
gi|7298330|gb|AAF53558.1| CG17331, isoform A [Drosophila melanogaster]
gi|21064815|gb|AAM29637.1| RH72196p [Drosophila melanogaster]
gi|220949490|gb|ACL87288.1| CG17331-PA [synthetic construct]
gi|220958608|gb|ACL91847.1| CG17331-PA [synthetic construct]
gi|440213861|gb|AGB93046.1| CG17331, isoform B [Drosophila melanogaster]
Length = 201
Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 77/190 (40%), Gaps = 9/190 (4%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
++ + G + + D + + E +NK+H++S L + G D QF E ++
Sbjct: 4 LLGIKGPDFVMLAADTTHARSIIVMKEDQNKIHKVSDSLLISTVGESGDTEQFTEFISKN 63
Query: 69 TANYVASEQSPISPDTFAAIASWEL--YARKLTSPLFINPIIAGFYPDSGE--VFLSTLD 124
A Y +SP A L Y R T P + +AG+ P++G F+ L
Sbjct: 64 IALYKMRNGYDLSPRESAHFTRKNLAEYLRSRT-PYQVFMFVAGYDPNAGPELTFIDYL- 121
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
++ G I + +W P ++ + ++V + + + +R +
Sbjct: 122 ---ANALPVNYAGHGYGAIFASSIYDRYWHPNITQAEAYDVFKKCIAEIQKRLVVNLKNF 178
Query: 185 TVYVVEPDKV 194
TV VV+ D V
Sbjct: 179 TVAVVDKDGV 188
>gi|409095355|ref|ZP_11215379.1| proteasome subunit beta [Thermococcus zilligii AN1]
Length = 206
Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 80/192 (41%), Gaps = 5/192 (2%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQ 60
+S G V + ++ + D G+ ++ K+ Q+ HL + GL D +
Sbjct: 5 LSAAKGTTTVGLICRDGVILAADKRATMGNMITSKEVTKIFQIDDHLAIAGAGLVGDILS 64
Query: 61 FAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFL 120
+ Y A +S + + L+ + F ++ G+ D+ E L
Sbjct: 65 MVRLLRAEARLYRARVGREMSVKVLTTLIANILHGGR-GYGYFAWFLVGGY--DT-EPRL 120
Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKS 180
++D AG T + +VA GS + I E+ + GLS E + ++ V A +RD +
Sbjct: 121 YSIDAAGGVTEE-KYVAAGSGMEFALAILENEFSEGLSLEDGMRLAAKAVNAAIKRDVYT 179
Query: 181 GWGATVYVVEPD 192
G G T+ VV +
Sbjct: 180 GEGITLVVVTKE 191
>gi|225680870|gb|EEH19154.1| proteasome component Pre1 [Paracoccidioides brasiliensis Pb03]
Length = 210
Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 80/191 (41%), Gaps = 10/191 (5%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
++ + GK+ I ++G + ++K +++ H + G D +QFAE +
Sbjct: 11 LLGITGKDFTLIAASKAAMRGPTVLKAADDKTRELNKHTLMAFSGEAGDTVQFAEYIQAN 70
Query: 69 TANYVASEQSPISPDTFAAIASWELYARKLTS--PLFINPIIAGFYPDSGEVFLSTLDMA 126
Y ++ +SP A EL +R L S P +N ++ G P + + L LD
Sbjct: 71 VQLYSMRNETELSPSAVANFVRGEL-SRSLRSRRPYTVNLLLGGVDPITEKPSLYWLDYL 129
Query: 127 GCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQ---LFEVCSQVVIQACERDTKSGWG 183
+ A G AQ + I + P ++ EQ L ++C+ + + D K G
Sbjct: 130 AA-LAPVPYAAHGYAQYYCLSILDKHHHPDITFEQGLKLLQMCTDELKRRLPIDFK---G 185
Query: 184 ATVYVVEPDKV 194
V VV + +
Sbjct: 186 VLVKVVRKEGI 196
>gi|224082072|ref|XP_002198635.1| PREDICTED: proteasome subunit beta type-2 [Taeniopygia guttata]
Length = 201
Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 70/165 (42%), Gaps = 12/165 (7%)
Query: 21 GVDHLLVQGD-------FTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYV 73
G D++LV D + +K+ +MS + L+ G D +QFAE + Y
Sbjct: 9 GPDYVLVAADTVAATSIIQMKHDHDKMFKMSEKILLLCVGEPGDTVQFAEYIQKNVQLYK 68
Query: 74 ASEQSPISPDTFAAIASWEL--YARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETR 131
+SP A L Y R T P +N ++AG+ G +A
Sbjct: 69 MRNGYELSPTAAANFTRRNLADYLRSRT-PYHVNLLLAGYDDHEGPALYYMDYLAALA-- 125
Query: 132 KTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACER 176
KT F A G + + I + +++PG++ E+ ++ Q + + +R
Sbjct: 126 KTPFAAHGYGAFLTLSILDRYYKPGITREEAVDLLKQCLEELKKR 170
>gi|363748210|ref|XP_003644323.1| hypothetical protein Ecym_1264 [Eremothecium cymbalariae
DBVPG#7215]
gi|356887955|gb|AET37506.1| hypothetical protein Ecym_1264 [Eremothecium cymbalariae
DBVPG#7215]
Length = 195
Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 12/168 (7%)
Query: 37 ENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAIASWELYAR 96
++K Q+SPH + G D +QF+E + Y+ E +SP ++ EL A+
Sbjct: 32 DDKTRQLSPHSLISFTGESGDTVQFSEYIQANMQLYMIRENYELSPQAQSSFVRNEL-AK 90
Query: 97 KLTS--PLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQ 154
L S P +N +I G+ + L +D G + + + A G + + + ++
Sbjct: 91 SLRSRKPFQVNVLIGGYDVKKEKPELYQIDYLGTKV-ELPYAAHGYSGFYTFSLLDHHYR 149
Query: 155 PGLSPEQ---LFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKI 199
P +S E+ L ++C + + + D K G V VV DK IR+I
Sbjct: 150 PDMSTEEGLKLLKLCVEELERRMPIDFK---GVLVKVV--DKDGIREI 192
>gi|67526597|ref|XP_661360.1| hypothetical protein AN3756.2 [Aspergillus nidulans FGSC A4]
gi|40740774|gb|EAA59964.1| conserved hypothetical protein [Aspergillus nidulans FGSC A4]
gi|259481696|tpe|CBF75458.1| TPA: putative proteasome core beta subunit (Eurofung) [Aspergillus
nidulans FGSC A4]
Length = 233
Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 73/180 (40%), Gaps = 6/180 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
+N G +I+A+ K+ +G D G + +K+ Q+ ++ G AD A
Sbjct: 28 VNLGTSIMAINFKDGVILGADSRTTTGAYIANRVTDKLTQVHDTIWCCRSGSAADTQAVA 87
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSGEVFLS 121
+ ++ Y P S AA+ Y K L IIAG+ P G+V+
Sbjct: 88 DIVSYHLNMYSIVNNEPPSTQVAAALFQELCYENK--DMLSAGIIIAGYDPRHGGQVYSI 145
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
L G K + GGS I G ++ W+ ++ E+ E + +A + D SG
Sbjct: 146 PL---GGSLHKQAYSIGGSGSTYIYGYCDANWKENMTEEEGVEFVRGALREAIKWDGSSG 202
>gi|346472801|gb|AEO36245.1| hypothetical protein [Amblyomma maculatum]
Length = 242
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 80/197 (40%), Gaps = 7/197 (3%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G +I+A+ IG D G + +K+ +++ +Y G +D A+ +
Sbjct: 42 GTSIIAVEFDGGVVIGADTRTSTGAYVANRVSDKLTRVTDRIYCCRSGSASDTQAIADIV 101
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGF-YPDSGEVFLSTLD 124
T Y P +T A I Y + L I AG+ + G+V++ L
Sbjct: 102 TYHVGLYEMVMGEPAKVETAANIFRELCYNHR--DQLVAGIICAGWDRHNGGQVYMVPL- 158
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G + GGS + G ++ ++PG++ E+ ++ + A RD SG
Sbjct: 159 --GGMLMRQPVAMGGSGSTYLYGYVDANYKPGMTKEECLSFVTKAISLAIVRDGSSGGVI 216
Query: 185 TVYVVEPDKVTIRKIAT 201
+ V+ D V RK+ T
Sbjct: 217 RLGVITKDGVE-RKVLT 232
>gi|328766922|gb|EGF76974.1| hypothetical protein BATDEDRAFT_92136 [Batrachochytrium
dendrobatidis JAM81]
Length = 231
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 82/212 (38%), Gaps = 16/212 (7%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG +A+AG + I D +G Y KVH+M L G+ AD +
Sbjct: 25 DNGGTTLAIAGDDFCVIAGDTRQSEGYSINTRYAPKVHEMRNGTVLATGGMFADSQTLMK 84
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
++ R Y +S A + S LY ++ P F + G + G+ + T
Sbjct: 85 RIQQRLEWYQFQHDKNMSAPAMAQMLSTILYYKRFF-PYFSWCSVGGL-DEHGKGCVYTY 142
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGI-----------GESFWQPGLSPEQLFEVCSQVVIQ 172
D G R + GGSA +I G S P L E + +
Sbjct: 143 DPVGNYER-VSWDCGGSAGKLIQPFLDNQIGKHHMSGASKSLPSL--ETVKRIVKDAFTS 199
Query: 173 ACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A ERD +G ++V+ D +T + ++D
Sbjct: 200 ATERDIYTGDFLEIFVITKDGITKEMLPLKLD 231
>gi|440293947|gb|ELP86994.1| proteasome subunit beta type 1, putative, partial [Entamoeba
invadens IP1]
Length = 173
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 69/165 (41%), Gaps = 10/165 (6%)
Query: 39 KVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKL 98
K++Q+S G+ AD + +++ + NY +S + A + S LY+ +
Sbjct: 8 KIYQLSSKCIFTASGMRADMNELTDQLKAQIKNYRYENNKEMSTEAIAQLLSNTLYSHRF 67
Query: 99 TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLS 158
P + I+ G GE + D G ++ + GS + + + ++ +
Sbjct: 68 F-PYYSFSILTGL-SVKGEPLIYNYDAVGS-FQEVAYTCSGSGEELAYPLLDALLKQ--R 122
Query: 159 PEQLFE-----VCSQVVIQACERDTKSGWGATVYVVEPDKVTIRK 198
E L E + V+ ACERD +G +YV+ + +T K
Sbjct: 123 TEVLLEKEGVNIARDVMTSACERDIHTGDDVELYVLNKNGITYTK 167
>gi|357616094|gb|EHJ70006.1| hypothetical protein KGM_20821 [Danaus plexippus]
Length = 437
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA+VAM G++C AI D T++ KV+QM P L++ PGL D ++
Sbjct: 362 NGGAVVAMKGQDCVAIATDKRYGIQAQTVSTNFPKVYQMGPTLFVGLPGLATDTQTVFQR 421
Query: 65 MTLR 68
+ R
Sbjct: 422 LKFR 425
>gi|281210614|gb|EFA84780.1| proteasome subunit beta type 1 [Polysphondylium pallidum PN500]
Length = 235
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 87/213 (40%), Gaps = 14/213 (6%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYE-NKVHQMSPHLYLINPGLCADGMQF 61
+++GG ++A+AG + I D + G + I + K+ Q++ + G+ AD +
Sbjct: 26 VDNGGTVLAIAGSDYCVIAGDTRMSDGGYGIQTRQYTKIFQLTNKCVIATSGMQADTLAL 85
Query: 62 AEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLS 121
+++ + Y P+S + S LY ++ P + ++ G D G +
Sbjct: 86 RKRLETVLSRYQKEHGKPMSTPAISQYLSNTLYQKRFF-PYYTFNLVCGVDED-GVGCIW 143
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGES----FWQ------PGLSPEQLFEVCSQVVI 171
T D G R + GS ++ + ++ F Q LS EQ + +
Sbjct: 144 TYDAVGSHER-VKMSSQGSGNQLVQPLLDNQVGKFNQRIVDGPRELSSEQAVSLAKDAIT 202
Query: 172 QACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A ERD +G A + V+ V K ++D
Sbjct: 203 SAGERDIYTGDFADIVVINSTGVHWEKFNLKLD 235
>gi|169806330|ref|XP_001827910.1| 20S proteasome core particle subunit beta 6 [Enterocytozoon
bieneusi H348]
gi|161779358|gb|EDQ31381.1| 20S proteasome core particle subunit beta 6 [Enterocytozoon
bieneusi H348]
Length = 276
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 87/213 (40%), Gaps = 24/213 (11%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG + + +N I D L Y K+H++ + +L G AD + A
Sbjct: 76 DNGGTTLTIKLQNKLIIAADTRLNAQYNIYTRYSTKIHKIKDY-FLTTVGFHADSHKIAL 134
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ + Y ++ +S A LY + PL+ + GF ++GE + +
Sbjct: 135 TLDYQLKQYEQYDKMTLSA--LAEFLHHVLYNNRFF-PLYSYCCLCGF--ENGEATIYSY 189
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQ----------- 172
D G +KT+ GS MI + +S W G + FE SQ+ +
Sbjct: 190 DCIG-SYQKTECRVNGSGTAMIQPLFDS-WISGKN----FENYSQISFEDALCLVKKAFH 243
Query: 173 -ACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A E D K+G +Y+++ +KV I R D
Sbjct: 244 SAAEADVKTGDYLEIYILDNNKVEKEVIDLRKD 276
>gi|388581296|gb|EIM21605.1| 20S proteasome subunit [Wallemia sebi CBS 633.66]
Length = 255
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 7/149 (4%)
Query: 1 MSLN----DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCA 56
MS N +GG ++A+AGK+ + D +G + YE KV +++ + G A
Sbjct: 1 MSFNPYTQNGGTVLAIAGKDFCVVAGDTRQSEGFSIQSRYETKVWRLNEKATIAANGFAA 60
Query: 57 DGMQFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSG 116
D Q +++ R Y + + + A + LY ++ F + +I G D G
Sbjct: 61 DCKQLVKRVKWRLETYKYAHNKEMPLKSIARMVQTMLYGKRFFP--FYSYVIIGGIDDEG 118
Query: 117 EVFLSTLDMAGCETRKTDFVAGGSAQNMI 145
+ D G R+T A G+AQ+++
Sbjct: 119 TGAVYGFDPVGSYERET-CRAAGAAQSLL 146
>gi|3811395|gb|AAC69911.1| LMP 2 [Mus musculus]
Length = 199
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 78/182 (42%), Gaps = 9/182 (4%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
I+A+ +G D + G + +K+ + H++ G AD A+ +
Sbjct: 3 IMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQHIFCALSGSAADAQAIADMAAYQ 62
Query: 69 TANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSGEVFLSTLDMAG 127
+ + P P AA + + K L + I+AG+ + G+V+ + M G
Sbjct: 63 LELHGLELEEP--PLVLAAANVVKNISYKYREDLLAHLIVAGWDQCEGGQVYGT---MGG 117
Query: 128 CETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVY 187
R+ F GGS + I G ++ ++PG++PE+ + + A RD S G +Y
Sbjct: 118 MLIRQP-FTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTDAITLAMNRDGSS--GGVIY 174
Query: 188 VV 189
+V
Sbjct: 175 LV 176
>gi|242764710|ref|XP_002340830.1| proteasome component Pup1, putative [Talaromyces stipitatus ATCC
10500]
gi|218724026|gb|EED23443.1| proteasome component Pup1, putative [Talaromyces stipitatus ATCC
10500]
Length = 277
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 71/190 (37%), Gaps = 5/190 (2%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G IV I D G + K+H +SP ++ G AD +
Sbjct: 29 GTTIVGCIYDKGVVIAADTRATSGPIVADKNCEKLHFISPQIWCAGAGTAADTEFTTALI 88
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
+ + S P T + L+ + ++ ++AG P +F T+
Sbjct: 89 SSNIELHSLSTGRPPRVATCMTMLKQHLFRYQGHIGAYL--VVAGVDPTGTHLF--TVHA 144
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
G T K +V GS M + ES W+P L E +CS+ ++ D SG
Sbjct: 145 HG-STDKLPYVTMGSGSLAAMSVFESMWKPNLDKEGAIALCSEAILAGIFNDLGSGSNVD 203
Query: 186 VYVVEPDKVT 195
V V+E D+ T
Sbjct: 204 VCVIEKDQPT 213
>gi|195383886|ref|XP_002050656.1| GJ20086 [Drosophila virilis]
gi|194145453|gb|EDW61849.1| GJ20086 [Drosophila virilis]
Length = 222
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 74/179 (41%), Gaps = 4/179 (2%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ IG D G + +K+ Q+S ++Y G AD A
Sbjct: 12 VSTGTTIMAVEFDGGVVIGADSRTSSGAYVANRVTDKLTQISENIYCCRSGSAADTQAIA 71
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLST 122
+ + + NY Q+ P A + + Y L I+AG+ + G S
Sbjct: 72 D-IVAYSLNY-HRNQTNKEPLVCEAASEFRNYCYNYRDSLLAGIIVAGWDEERGGQVYS- 128
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
+ + G TR+ + GGS + I G + ++PG+ ++ + + V A D SG
Sbjct: 129 VPLGGMLTREGCTI-GGSGSSYIYGFVKEHYRPGMPMDECIDFVKKAVQHAIYHDGSSG 186
>gi|449546189|gb|EMD37159.1| 20S proteasome subunit [Ceriporiopsis subvermispora B]
Length = 194
Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 72/185 (38%), Gaps = 2/185 (1%)
Query: 11 AMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTA 70
A+ GK I D + + E+K+ +SPHL + G D +QFAE +
Sbjct: 6 AITGKGYVIIAADTTAARSIIKMKSDEDKIKVLSPHLLMAYSGEPGDTVQFAEFIERNIR 65
Query: 71 NYVASEQSPISPDTFAAIASWELY-ARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCE 129
Y P+ P + A+ L + + P +N ++ G+ P L +D G
Sbjct: 66 LYHIRNPHPLRPQSAASWIRRSLADSIRSRRPYAVNLLVGGYDPAEHAPHLYWMDYLGTM 125
Query: 130 TRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVV 189
+ F A G + + + + P + E+ + + + +R + V VV
Sbjct: 126 A-EVPFAAHGYGAYFALSLLDRYHDPEANLEEGIATLKKCIDEVAQRLVVAPGKYKVKVV 184
Query: 190 EPDKV 194
+ D V
Sbjct: 185 DKDGV 189
>gi|344290109|ref|XP_003416781.1| PREDICTED: proteasome subunit beta type-6-like [Loxodonta africana]
Length = 211
Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 74/174 (42%), Gaps = 6/174 (3%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
I+A+ +G D G + +K+ + ++ G AD A+ +T +
Sbjct: 9 IMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQ 68
Query: 69 TANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSGEVFLSTLDMAG 127
+ P P A + ++ + L IIAG+ P + G+V+ ++ M G
Sbjct: 69 LGFHSIELNEP--PLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVY--SVPMGG 124
Query: 128 CETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
R++ F GGS + I G ++ ++ G++ E+ + + A ERD SG
Sbjct: 125 MMVRQS-FAIGGSGSSYIYGYVDATYREGMTKEECLHFTANALALAMERDGSSG 177
>gi|72391616|ref|XP_846102.1| proteasome beta 6 subunit [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|62175642|gb|AAX69774.1| proteasome beta 6 subunit [Trypanosoma brucei]
gi|70802638|gb|AAZ12543.1| proteasome beta 6 subunit [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
Length = 258
Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 85/213 (39%), Gaps = 16/213 (7%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN--KVHQMSPHLYLINPGLCADGMQF 61
++GG I A+AG N +G D L GDF I + K+ +++ ++L + G+ AD +Q
Sbjct: 50 DNGGTIAAIAGSNYVVLGADTRL-NGDFCIHTRSDTSKLFKLTDRIFLASSGMQADRLQL 108
Query: 62 AEKMTLRTANYVASEQSPI-SPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFL 120
+ + R Y + + S A + S LY R+ P + +I G + G
Sbjct: 109 QQMLKYRIQWYQYNNGGKVPSTKAIAKLTSTMLYQRRFF-PYYTFNMIVGI-DEKGAGVC 166
Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQ---------PGLSPEQLFEVCSQVVI 171
+ D G T + GSA + + + + L+ E+ +
Sbjct: 167 YSYDPVG-STEPFRYGTCGSASSFVEPLLDCLLTRQHMVTQAPADLTMEEALGMLKNAFT 225
Query: 172 QACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A ERD +G ++V D V R D
Sbjct: 226 GAAERDIFTGDTVCFHIVTADGVGTEMFELRKD 258
>gi|448530387|ref|XP_003870050.1| Pre7 protein [Candida orthopsilosis Co 90-125]
gi|380354404|emb|CCG23919.1| Pre7 protein [Candida orthopsilosis]
Length = 286
Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 92/219 (42%), Gaps = 21/219 (9%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG ++ +AG++ + D V+G + YE K+H + ++ + G ADG+ +
Sbjct: 71 DNGGTVLGIAGEDFAVLAGDTRQVEGYSIQSRYEPKIHNVGDNILMTANGFAADGVALID 130
Query: 64 KMTLRTANY-VASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLST 122
K Y + + + A LY ++ P +++ +IAG + G+ + +
Sbjct: 131 KFKQSFTWYKFDNGNRKLEISSAARYIQHLLYGKRFF-PYYVSTLIAGL-DEEGKGAVYS 188
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGI------GESFWQPG-----------LSPEQLFEV 165
D G R+ AGG+A ++IM ++ + PG LS E++ ++
Sbjct: 189 YDPVGSYERE-QCRAGGAAASLIMPFLDNQVNFKNQFVPGTDGKEKKPLKYLSLEEVIQL 247
Query: 166 CSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A ER G G + +V D V + D
Sbjct: 248 VRDAFNSAGERHIYVGDGLEILIVTKDGVRTEYYPLKRD 286
>gi|119480173|ref|XP_001260115.1| proteasome component Pup1, putative [Neosartorya fischeri NRRL 181]
gi|119408269|gb|EAW18218.1| proteasome component Pup1, putative [Neosartorya fischeri NRRL 181]
Length = 272
Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 72/190 (37%), Gaps = 5/190 (2%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G IV N I D G + K+H ++P ++ G AD +
Sbjct: 29 GTTIVGCIFDNGVVIAADTRATSGPIVADKNCEKLHYIAPKIWCAGAGTAADTEFTTALI 88
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
+ + S P P + + + + + ++AG P V L T+
Sbjct: 89 SSNVELHSLSTGRP--PRVITCMTMLKQHLFRYQGHIGAYLVVAGVDPTG--VGLFTVHA 144
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
G T K +V GS M + ES W+P L+ E+ +CS+ + D SG
Sbjct: 145 HG-STDKLPYVTMGSGSLAAMSVFESMWKPQLNREEAIALCSEAIKAGIFNDLGSGSNVD 203
Query: 186 VYVVEPDKVT 195
V V++ DK T
Sbjct: 204 VCVIQKDKPT 213
>gi|387017848|gb|AFJ51042.1| Proteasome subunit beta type-2-like [Crotalus adamanteus]
Length = 201
Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 13/173 (7%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G V MA A + H+ D K+ +MS + L+ G D +QFAE +
Sbjct: 9 GPDFVLMAADTVAASSIVHMKRDHD--------KMFKMSEKILLLCVGEAGDTVQFAEYI 60
Query: 66 TLRTANYVASEQSPISPDTFAAIASWEL--YARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
Y +SP A L Y R SP +N ++AG+ G
Sbjct: 61 QKNVQLYKMRNGYELSPTAAANFTRRNLADYLRS-RSPYHVNLLLAGYDEHDGPALYYMD 119
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACER 176
+A K F A G + + I + +++PG++ E+ EV + + + +R
Sbjct: 120 YLASLA--KVPFAAHGYGAFLTLSILDRYYKPGITREEAIEVLKKCLEELQKR 170
>gi|393229883|gb|EJD37498.1| proteasome subunit [Auricularia delicata TFB-10046 SS5]
Length = 242
Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 83/194 (42%), Gaps = 12/194 (6%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG I+A+AG + + D +G Y KV +++ L G ADG F +K
Sbjct: 12 NGGTILAVAGADFAVVAGDTRQTEGYSIQTRYAPKVFRLTDKAVLAVNGFAADGNMFVKK 71
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y + + + A + LYA++ P ++ I+ G + G + + D
Sbjct: 72 VKQRLEWYRHAHSKDMPLQSIARMIQTMLYAKRFF-PYYVYNILGGI-DEQGVGAVYSFD 129
Query: 125 MAGCETRKTDFVAGGSAQNMIMGI--GESFW--QPGLSPEQL-----FEVCSQVVIQACE 175
G R+T A G+AQ+++ + ++ Q G P L + + A E
Sbjct: 130 PVGSYERET-CRAAGAAQSLVQPFLDNQIYFKNQQGDHPAHLPLDHVLSLVTDAFTGATE 188
Query: 176 RDTKSGWGATVYVV 189
R + G G ++V+
Sbjct: 189 RHIEVGDGLQMFVI 202
>gi|440634035|gb|ELR03954.1| 20S proteasome subunit beta 1 [Geomyces destructans 20631-21]
Length = 229
Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 78/198 (39%), Gaps = 7/198 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
+N G +I+A+ K+ +G D G + +K+ Q+ ++ G AD A
Sbjct: 26 VNLGTSIMAINFKDGVILGADSRTTTGAYIANRVTDKLTQVHDTIWCCRSGSAADTQAVA 85
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGF-YPDSGEVFLS 121
+ + + Y +P P T A A ++ L IIAG+ G+V+
Sbjct: 86 DIVHYQLGMYGIQNGAP--PTTQVAAAMFQELCYNNKDRLSAGLIIAGWDERHGGQVYSI 143
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
L G K + GGS I G ++ WQ G + + + +A + D SG
Sbjct: 144 PL---GGSLHKQSYAIGGSGSTYIYGYCDANWQEGFEEAEAVDFVKGALTEAIKWDGSSG 200
Query: 182 WGATVYVVEPDKVTIRKI 199
G VV K +R +
Sbjct: 201 -GVIRMVVLTKKGAVRHL 217
>gi|392592203|gb|EIW81530.1| 20S proteasome subunit [Coniophora puteana RWD-64-598 SS2]
Length = 257
Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 85/199 (42%), Gaps = 18/199 (9%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG I+A+AG + I D +G Y KV +++ L G ADG F +K
Sbjct: 25 NGGTILAIAGADFSVIAGDTRQSEGYNIQTRYAPKVFRLTDRAVLAVNGFAADGNMFVKK 84
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPD-SGEVFLSTL 123
+ R Y + + A + LYAR+ P ++ I+ G D +G V+ +
Sbjct: 85 VKQRLEWYRHAHGKDMPLRAIARLIQTMLYARRFF-PYYVYNILGGIEEDGTGAVY--SF 141
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGI--GESFWQPGLSPEQ--------LFEVCSQVV--- 170
D G R+ A G+AQ+++ + +++ +P L V S V+
Sbjct: 142 DPVGSYEREA-CRAAGAAQSLVQPFLDNQIYFKNQTAPPDSAHPTHLPLPTVLSIVIDSF 200
Query: 171 IQACERDTKSGWGATVYVV 189
A ER + G G +Y+V
Sbjct: 201 TSATERHIEVGDGLEMYIV 219
>gi|225713306|gb|ACO12499.1| Proteasome subunit beta type-2 [Lepeophtheirus salmonis]
gi|290562017|gb|ADD38406.1| Proteasome subunit beta type-2 [Lepeophtheirus salmonis]
Length = 206
Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 71/170 (41%), Gaps = 6/170 (3%)
Query: 10 VAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRT 69
+ +A + + D Q + + K + ++ HL + G D QFAE M
Sbjct: 5 IGIAFNDFVMVATDQTCAQSILMLKDTCEKTYPLTNHLLMSALGESGDTTQFAEFMAKNI 64
Query: 70 ANYVASEQSPISPDTFAAIASWEL--YARKLTSPLFINPIIAGFYPDSGEVFLSTLD-MA 126
Y +SP A L Y R T P +N +IAG+ S + L T+D +A
Sbjct: 65 QLYKMRNAYEMSPSEAANFTRRNLADYLRSRT-PFHVNLLIAGYDKKSDKAELYTMDYLA 123
Query: 127 GCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACER 176
G KT+ + G GI + ++P ++ E+ +++ V + +R
Sbjct: 124 GMV--KTEHASHGYGGIFSSGILDRNYRPDMTVEEGYDLIKTCVAEVQKR 171
>gi|383127955|gb|AFG44635.1| hypothetical protein CL406Contig2_01, partial [Pinus taeda]
Length = 86
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 32 TIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAIASW 91
TIA ++ ++ LY+ GL D ++ R Y E+ + P+TFA++ S
Sbjct: 5 TIATDFQRIFKIHDKLYVGLSGLATDVQTLYQRFAFRHKLYQLREERNMRPETFASLVSA 64
Query: 92 ELYARKLTSPLFINPIIAGFYPD 114
LY ++ P F P+IAG D
Sbjct: 65 LLYEKRF-GPYFCQPVIAGLGED 86
>gi|403171610|ref|XP_003330811.2| 20S proteasome subunit beta 6 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375169259|gb|EFP86392.2| 20S proteasome subunit beta 6 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 255
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 66/144 (45%), Gaps = 5/144 (3%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG I+A++ K I D +G Y KV Q++ + G ADG + +
Sbjct: 28 DNGGTILAISSKEFAVIAGDTRQSEGYSIQTRYAPKVTQLTEECCIAVNGFAADGKELVK 87
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPD-SGEVFLST 122
++ R Y + S S + A + LY R+ P + I+AG D +G V+ +
Sbjct: 88 QLKQRLQWYQHTHASQPSVQSIARLVQTMLYGRRFF-PYYAYVILAGIDRDGTGAVY--S 144
Query: 123 LDMAGCETRKTDFVAGGSAQNMIM 146
D G R++ A G+AQ+++
Sbjct: 145 FDPVGSYERES-CRAAGAAQSLVQ 167
>gi|149237248|ref|XP_001524501.1| proteasome component C5 [Lodderomyces elongisporus NRRL YB-4239]
gi|146452036|gb|EDK46292.1| proteasome component C5 [Lodderomyces elongisporus NRRL YB-4239]
Length = 243
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 92/219 (42%), Gaps = 22/219 (10%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG ++ +AG++ + D V+G + YE +VH + ++ + G ADG+ +
Sbjct: 29 DNGGTVLGIAGEDFAVLAGDTRQVEGYSIQSRYEPRVHNVGDNILMTANGFAADGVALID 88
Query: 64 KMTLRTANY-VASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLST 122
+ Y +E + + A LY ++ +++ +IAG + G+ + +
Sbjct: 89 RFKQSFKWYKFDNENRKLEISSAARYIQHLLYGKRFFP--YVSTLIAGL-DEEGKGAVYS 145
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGE------SFWQPG-----------LSPEQLFEV 165
D G R+ AGG+A ++IM + + + PG LS E++ ++
Sbjct: 146 YDPVGSYEREQ-CRAGGAAASLIMPFLDNQVNFKNQYVPGTDGKEKKPLKYLSLEEVIQL 204
Query: 166 CSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A ER G G + +V D V + D
Sbjct: 205 VRDAFTSAGERHIYVGDGLEIMIVTKDGVRTEYFPLKRD 243
>gi|170089877|ref|XP_001876161.1| 20S proteasome subunit [Laccaria bicolor S238N-H82]
gi|164649421|gb|EDR13663.1| 20S proteasome subunit [Laccaria bicolor S238N-H82]
Length = 249
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 86/199 (43%), Gaps = 18/199 (9%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG I+A+AG + I D +G Y KV +++ L G ADG F +K
Sbjct: 16 NGGTILAIAGADFSVIAGDTRQSEGYSIQTRYAPKVFRLTDKAVLAVNGFAADGNMFVKK 75
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPD-SGEVFLSTL 123
+ R Y + + A + LYAR+ P ++ I+ G D +G V+ +
Sbjct: 76 VRQRLEWYRHAHSKDMPIRAIARLIQTMLYARRFF-PYYVYNILGGIEEDGTGAVY--SF 132
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGI--GESFWQ-----PGLS-PEQL-FEVCSQVVIQ-- 172
D G R+ A G+AQ+++ + +++ PG S P+ L +VI
Sbjct: 133 DPVGSYEREA-CRAAGAAQSLMQPFLDNQIYFKNQTPAPGTSFPQHLPLNTVLSLVIDSF 191
Query: 173 --ACERDTKSGWGATVYVV 189
A ER + G +YVV
Sbjct: 192 TGATERHIEVGDSLEMYVV 210
>gi|451848714|gb|EMD62019.1| hypothetical protein COCSADRAFT_95820 [Cochliobolus sativus ND90Pr]
Length = 229
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 74/180 (41%), Gaps = 6/180 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
+N G +I+A+ K+ + D G + +K+ Q+ ++ G AD A
Sbjct: 25 VNLGTSIMAINFKDGVILAADSRTTTGAYIANRVTDKLTQVHDTIWCCRSGSAADTQAVA 84
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGF-YPDSGEVFLS 121
+ + Y + P + T AA+ Y+ K L IIAG+ + G+V+
Sbjct: 85 DIVQYHLGMYGTTNDEPPTIQTAAALFQELCYSNK--DQLSAGLIIAGWDHRHGGQVYSI 142
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
L G K + GGS I G ++ W+ +S E+ + + +A + D SG
Sbjct: 143 PL---GGSLHKQSYAIGGSGSTYIYGYCDANWRENMSEEEGIKFVKGALAEAIKWDGSSG 199
>gi|448733676|ref|ZP_21715918.1| proteasome beta subunit [Halococcus salifodinae DSM 8989]
gi|445802196|gb|EMA52503.1| proteasome beta subunit [Halococcus salifodinae DSM 8989]
Length = 237
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 102 LFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQ 161
+ P++ G + ++ +D+ G + D+ GS +G+ E + GLS ++
Sbjct: 136 FIVQPVLGGVDDEGSHIY--RIDIGGS-VMEEDYAVSGSGSPFALGVLEQEYDDGLSMDE 192
Query: 162 LFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRK 198
V ++ V A ERDT SG G T+ V + VTI
Sbjct: 193 AETVAARAVKSAVERDTASGNGITLSEVTEEGVTIEN 229
>gi|46105478|ref|XP_380543.1| hypothetical protein FG00367.1 [Gibberella zeae PH-1]
gi|408400670|gb|EKJ79747.1| hypothetical protein FPSE_00027 [Fusarium pseudograminearum CS3096]
Length = 270
Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 78/194 (40%), Gaps = 15/194 (7%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
DGG ++A D G + K+H +SP ++ G AD +F
Sbjct: 38 DGGVVIA----------ADTRATSGPIVADKNCEKLHYISPQIWCAGAGTAAD-TEFTTA 86
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ + + + S + P + + + + + ++AG P +F T+
Sbjct: 87 L-ISSQLELHSLSTGRKPRVVTCMTLLKQHLFRYQGHIGAYLVVAGVDPTGTHLF--TVH 143
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G T K +V GS M + E+ W+P LS E+ ++ S ++ D SG
Sbjct: 144 AHG-STDKLPYVTMGSGSLAAMSVFETQWKPDLSQEEAIKLASDAILAGVWNDLGSGSNV 202
Query: 185 TVYVVEPDKVTIRK 198
V ++ DK T+++
Sbjct: 203 DVAIITSDKTTLKR 216
>gi|384489923|gb|EIE81145.1| proteasome subunit beta type-6 [Rhizopus delemar RA 99-880]
Length = 224
Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 77/193 (39%), Gaps = 6/193 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
+N G +I+A+A K+ +G D G + +K+ ++ +Y G AD A
Sbjct: 18 VNLGTSIMAVAYKDGVILGADSRTTTGAYIANRVTDKLTKVHDKIYCCRSGSAADTQAIA 77
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSG-EVFLS 121
+ + Y +E S T +A+ Y K L I+AG+ G V+
Sbjct: 78 DIVHYYLQMYSVNEDEAPSVRTASALFQELCYQNK--DNLMAGIIVAGWDEKDGPSVYNV 135
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
L G K F GGS I G ++ ++ ++ E+ E + A RD SG
Sbjct: 136 PL---GGSLHKAPFAIGGSGSTYIYGYCDAKYKDDMTREECEEFVKNSLALAMSRDGSSG 192
Query: 182 WGATVYVVEPDKV 194
+ V+ D V
Sbjct: 193 GVIRMAVITKDGV 205
>gi|225705784|gb|ACO08738.1| Proteasome subunit beta type 2 [Oncorhynchus mykiss]
Length = 200
Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/186 (19%), Positives = 79/186 (42%), Gaps = 5/186 (2%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
++ + G++ + D++ + + ++KV ++S + L+ G D +QFAE +
Sbjct: 4 LIGIQGQDFVLVAADNVAAHSIVKMKQDQDKVFKLSDKILLLCVGEAGDTVQFAEYIQKN 63
Query: 69 TANYVASEQSPISPDTFAAIASWEL--YARKLTSPLFINPIIAGFYPDSGEVFLSTLDMA 126
Y +SP A L Y R T P +N ++AGF G ++
Sbjct: 64 IQLYKMRNGYELSPTAAANFTRKNLADYLRSRT-PYHVNLLLAGFDETDGPGLYYMDHLS 122
Query: 127 GCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATV 186
K F A G + + I + +++P L+ ++ ++ + + + R + +V
Sbjct: 123 ALA--KAPFAAHGHGAYLTLSILDRYYRPDLTRDEAMDLLKKCIEELNHRFILNLPSFSV 180
Query: 187 YVVEPD 192
+++ D
Sbjct: 181 RLIDKD 186
>gi|170291023|ref|YP_001737839.1| proteasome endopeptidase complex protein [Candidatus Korarchaeum
cryptofilum OPF8]
gi|302595829|sp|B1L6S7.1|PSB1_KORCO RecName: Full=Proteasome subunit beta 1; AltName: Full=20S
proteasome beta subunit 1; AltName: Full=Proteasome core
protein PsmB 1; Flags: Precursor
gi|170175103|gb|ACB08156.1| Proteasome endopeptidase complex [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 206
Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 75/190 (39%), Gaps = 8/190 (4%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
L G V + KN + D G F ++ K +++ + GL ADG
Sbjct: 2 LMKGTTTVGVKFKNGVIVASDKRATSGTFVASKSAVKTLKITDYAVATISGLVADGQYLV 61
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFI--NPIIAGFYPDSGEVFL 120
+ Y + P+S A I ++ L + P F+ I+ G + +F
Sbjct: 62 NNVRTIADLYSLDTERPLSVRGIARILAFLL---RRYRPYFLLAQLIVGGVDREGAHLF- 117
Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKS 180
+D G T + D++A GS + + + ES + P + E + + A RD +
Sbjct: 118 -NVDPFGTLTEE-DYLATGSGSPVAISVIESGYSPDMDRESALRLVISSMTAALSRDAAT 175
Query: 181 GWGATVYVVE 190
G G V V++
Sbjct: 176 GDGIDVVVID 185
>gi|464445|sp|P28077.2|PSB9_RAT RecName: Full=Proteasome subunit beta type-9; AltName: Full=Low
molecular mass protein 2; AltName: Full=Macropain chain
7; AltName: Full=Multicatalytic endopeptidase complex
chain 7; AltName: Full=Proteasome chain 7; AltName:
Full=Proteasome subunit beta-1i; AltName: Full=Really
interesting new gene 12 protein; Flags: Precursor
gi|286252|dbj|BAA01589.1| proteasome subunit R-RING12 [Rattus sp.]
Length = 219
Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 77/197 (39%), Gaps = 5/197 (2%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ +G D + G + +K+ + +Y G AD A
Sbjct: 17 VHTGTTIMAVEFDGGVVVGSDSRVSAGAAVVNRVFDKLSPLHQRIYCALSGSAADAQAIA 76
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLST 122
+ + + + P P AA + + K L + ++AG+ G T
Sbjct: 77 DMAAYQLELHGLELEEP--PLVLAAANIVKNISYKYREDLLAHLMVAGWDQHEGGQVYGT 134
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGW 182
M G R+ F GGS I G ++ ++PG++PE+ + + A RD SG
Sbjct: 135 --MGGMLIRQP-FAIGGSGSTYIYGYVDAAYKPGMTPEECRRFTTDAITLAMNRDGSSGG 191
Query: 183 GATVYVVEPDKVTIRKI 199
+ + D V R I
Sbjct: 192 VIYLVTITADGVDHRVI 208
>gi|395533603|ref|XP_003768845.1| PREDICTED: proteasome subunit beta type-6 [Sarcophilus harrisii]
Length = 239
Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 77/180 (42%), Gaps = 6/180 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ +G D G + +K+ + ++ G AD A
Sbjct: 31 VSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVA 90
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSGEVFLS 121
+ +T + + + P P A ++ + L I+AG+ P + G+V+
Sbjct: 91 DAVTYQLSFHSIELNEP--PLVHTAANLFKEMCYRYREDLMAGIIVAGWDPYEGGQVY-- 146
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
++ M G R+ F GGS + I G ++ +Q G++ +Q + + + A ERD SG
Sbjct: 147 SVPMGGMMVRQP-FSIGGSGSSYIYGYVDASYQEGMNEKQCLQFTANALALAMERDGSSG 205
>gi|46397057|sp|Q9U794.1|PSB1_TRYBB RecName: Full=Proteasome subunit beta type-1; AltName: Full=20S
proteasome subunit beta-6
gi|6224687|gb|AAF05905.1|AF148124_1 20S proteasome beta 6 subunit [Trypanosoma brucei brucei]
gi|261329654|emb|CBH12636.1| 20S proteasome beta 6 subunit, putative [Trypanosoma brucei
gambiense DAL972]
Length = 258
Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 85/213 (39%), Gaps = 16/213 (7%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN--KVHQMSPHLYLINPGLCADGMQF 61
++GG I A+AG N +G D L GDF I + K+ +++ ++L + G+ AD +Q
Sbjct: 50 DNGGTIAAIAGSNYVVLGADTRL-NGDFCIHTRSDTSKLFKLTDRIFLASSGMQADRLQL 108
Query: 62 AEKMTLRTANYVASEQSPI-SPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFL 120
+ + R Y + + S A + S LY R+ P + +I G + G
Sbjct: 109 QQMLKYRIQWYQYNNGGKVPSTKAIAKLTSTMLYQRRFF-PYYTFNMIVGI-DEKGAGVC 166
Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQ---------PGLSPEQLFEVCSQVVI 171
+ D G T + GSA + + + + L+ E+ +
Sbjct: 167 YSYDPVG-STEPFRYGTCGSASSFVEPLLDCLLTRQHMVTQAPADLTMEEALGMLKNAFT 225
Query: 172 QACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A ERD +G +++ D V R D
Sbjct: 226 GAAERDIFTGDTVCFHIITADGVGTEMFELRKD 258
>gi|307198388|gb|EFN79330.1| Proteasome subunit beta type-2 [Harpegnathos saltator]
Length = 207
Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/170 (20%), Positives = 69/170 (40%), Gaps = 5/170 (2%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
++ + K+ + D Q + E+K+H++S L + G D QF+E +
Sbjct: 4 LIGIQCKDFVLVAADMTTTQSIIVMKSDEHKIHKISDKLVMATSGESGDTTQFSEYIGKN 63
Query: 69 TANYVASEQSPISPDTFAAIASWEL--YARKLTSPLFINPIIAGFYPDSGEVFLSTLDMA 126
Y +SP A L Y R T P F+N ++AG+ D+G +A
Sbjct: 64 IQLYKMRNGYELSPKAAACFTRRNLADYLRSRT-PYFVNMLMAGYDDDAGPELYFIDYLA 122
Query: 127 GCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACER 176
C K + G M + + +++ + ++ + + + V + +R
Sbjct: 123 SC--VKVPYATHGYGGMFSMSVLDRYYKHDCTEQEAYALLKKCVQEIHKR 170
>gi|393909340|gb|EFO25921.2| proteasome A-type and B-type family protein [Loa loa]
Length = 232
Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 81/199 (40%), Gaps = 6/199 (3%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G ++AM +G D G + + +K+ ++ + + G AD ++ +
Sbjct: 18 GTTLIAMEFDGGVVVGTDSRTSSGSYISSRATDKITPVTNRMVVCRSGSAADTQAISDIV 77
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
Y E+ ++ A I LY K L + ++AG Y D L + +
Sbjct: 78 KYYIEVYSMMEEEDVTVGRSAQIFRNFLY--KYRDSLSASVLVAG-YDDVEGGQLYAIPL 134
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
G TR+ A GS + G +S W+ G++ E+ E+ V A RD SG
Sbjct: 135 GGYVTRQR-CAASGSGSTFVQGFLDSQWKSGMTAEKCKEIVLNAVALATIRDGSSGGVIR 193
Query: 186 VYVVEPDKVTIRKIATRMD 204
+ V+ DK +++ R D
Sbjct: 194 LAVI--DKTGTQRMLIRPD 210
>gi|383864554|ref|XP_003707743.1| PREDICTED: proteasome subunit beta type-2-like [Megachile
rotundata]
Length = 207
Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 73/171 (42%), Gaps = 10/171 (5%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
++ + K+ + D VQ + E K+H+MS L + G D +QF+E +
Sbjct: 4 LIGIQFKDFVLVAADMTTVQSIMVMKNDEQKIHKMSDKLVMAVSGQSGDTIQFSEYIGKN 63
Query: 69 TANYVASEQSPISPDTFAAIASWEL--YARKLTSPLFINPIIAGFYPDSGEVFLSTLDMA 126
Y +SP A+ L Y R T+P F+N ++AG+ ++G +A
Sbjct: 64 IQLYKMRNGYELSPKAAASFTRRNLADYLRS-TTPYFVNLLMAGYDNNNGPELYFIDYLA 122
Query: 127 GCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERD 177
C + + A G + I + + + + E+ + ++++ C R+
Sbjct: 123 SCV--RVPYAAHGYGGFFSLSILDRYHKYDSTEEEAY-----ILMKKCVRE 166
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,289,886,799
Number of Sequences: 23463169
Number of extensions: 129371239
Number of successful extensions: 251412
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 1168
Number of HSP's that attempted gapping in prelim test: 249800
Number of HSP's gapped (non-prelim): 1894
length of query: 204
length of database: 8,064,228,071
effective HSP length: 136
effective length of query: 68
effective length of database: 9,168,204,383
effective search space: 623437898044
effective search space used: 623437898044
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 73 (32.7 bits)