BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1779
(204 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9XYN7|PSB3_DROME Proteasome subunit beta type-3 OS=Drosophila melanogaster
GN=Prosbeta3 PE=2 SV=1
Length = 205
Score = 160 bits (404), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 113/200 (56%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG +VAM GK+C AI DH TI+ KV + P ++L GL D + ++
Sbjct: 7 NGGCVVAMRGKDCVAIATDHRFGIQAQTISTDFKKVFHIGPRMFLGLTGLQTDILTVRDR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E + P F+A+ S LY + P FI P++AG P + E F+ +D
Sbjct: 67 LMFRKNLYETRENREMCPKPFSAMMSSFLYEHRF-GPYFIEPVVAGLDPKTMEPFICNMD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC DFV G+ + G+ E+ W+P L P+QLFEV +Q ++ A +RD SGWGA
Sbjct: 126 LIGCPNAPDDFVVAGTCAEQLYGMCETLWKPDLEPDQLFEVIAQSIVNAFDRDAMSGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
TVY++E DK+T R + TRMD
Sbjct: 186 TVYIIEKDKITERTLKTRMD 205
>sp|O73817|PSB3_ONCMY Proteasome subunit beta type-3 OS=Oncorhynchus mykiss GN=psmb3 PE=2
SV=1
Length = 205
Score = 148 bits (373), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 79/205 (38%), Positives = 110/205 (53%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GK C AI D VQ +++ K+ M LY+ GL D
Sbjct: 4 MSYN-GGAVMAMKGKQCVAIAADRRFGVQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
++++ R Y E I P TF ++ S LY R+ P +I P+IAG P + E F
Sbjct: 62 TVSQRLKFRLNLYELKEGRQIKPKTFMSMVSNLLYERRF-GPYYIEPVIAGLDPKTFEPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + G+ ES W+P + PE LFE SQ ++ A +RD
Sbjct: 121 ICSLDLIGCPMVTEDFVVSGTCSEQMYGMCESLWEPDMEPEDLFETISQAMLNAVDRDAV 180
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G V V+E DK+T R + RMD
Sbjct: 181 SGMGVVVQVIEKDKITTRTLKARMD 205
>sp|P25451|PSB3_YEAST Proteasome subunit beta type-3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PUP3 PE=1 SV=1
Length = 205
Score = 145 bits (366), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 107/200 (53%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG +VAM GK+C AI D L ++ K+ H++L GL D E
Sbjct: 8 NGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEM 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+T Y E+ I P+TF + S LY R+ P F+ P++AG SG+ F++ D
Sbjct: 67 FRYKTNLYKLKEERAIEPETFTQLVSSSLYERRF-GPYFVGPVVAGINSKSGKPFIAGFD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ GC DF+ G+A + + G+ ES ++P L PE LFE SQ ++ A +RD SGWGA
Sbjct: 126 LIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADRDALSGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY+++ D+V R + R D
Sbjct: 186 VVYIIKKDEVVKRYLKMRQD 205
>sp|Q9R1P1|PSB3_MOUSE Proteasome subunit beta type-3 OS=Mus musculus GN=Psmb3 PE=1 SV=1
Length = 205
Score = 143 bits (361), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 110/205 (53%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GKNC AI D +Q +++ K+ M LY+ GL D
Sbjct: 4 MSYN-GGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
A+++ R Y E I P T ++ + LY ++ P + P+IAG P + + F
Sbjct: 62 TVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRF-GPYYTEPVIAGLDPKTFKPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + G+ ES W+P + PE LFE SQ ++ A +RD
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAV 180
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G V+V+E DK+T R + RMD
Sbjct: 181 SGMGVIVHVIEKDKITTRTLKARMD 205
>sp|P40112|PSB3_RAT Proteasome subunit beta type-3 OS=Rattus norvegicus GN=Psmb3 PE=1
SV=1
Length = 205
Score = 143 bits (360), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 110/205 (53%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GKNC AI D +Q +++ K+ M LY+ GL D
Sbjct: 4 MSYN-GGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
A+++ R Y E I P T ++ + LY ++ P + P+IAG P + + F
Sbjct: 62 TVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRF-GPYYTEPVIAGLDPKTFKPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + G+ ES W+P + PE LFE SQ ++ A +RD
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAV 180
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G V+++E DK+T R + RMD
Sbjct: 181 SGMGVIVHIIEKDKITTRTLKARMD 205
>sp|P33672|PSB3_BOVIN Proteasome subunit beta type-3 OS=Bos taurus GN=PSMB3 PE=1 SV=3
Length = 205
Score = 142 bits (359), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 110/205 (53%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GKNC AI D +Q +++ K+ M LY+ GL D
Sbjct: 4 MSYN-GGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
A+++ R Y E I P T ++ + LY ++ P + P+IAG P + + F
Sbjct: 62 TVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRF-GPYYTEPVIAGLDPKTFKPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + G+ ES W+P + PE LFE SQ ++ A +RD
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCTEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAV 180
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G V+++E DK+T R + RMD
Sbjct: 181 SGMGVIVHIIEKDKITTRTLKARMD 205
>sp|P49720|PSB3_HUMAN Proteasome subunit beta type-3 OS=Homo sapiens GN=PSMB3 PE=1 SV=2
Length = 205
Score = 141 bits (356), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 73/205 (35%), Positives = 110/205 (53%), Gaps = 4/205 (1%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
MS N GGA++AM GKNC AI D +Q +++ K+ M LY+ GL D
Sbjct: 4 MSYN-GGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 61
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
A+++ R Y E I P T ++ + LY ++ P + P+IAG P + + F
Sbjct: 62 TVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRF-GPYYTEPVIAGLDPKTFKPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
+ +LD+ GC DFV G+ + G+ ES W+P + P+ LFE SQ ++ A +RD
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAV 180
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
SG G V+++E DK+T R + RMD
Sbjct: 181 SGMGVIVHIIEKDKITTRTLKARMD 205
>sp|O65084|PSB3_PICMA Proteasome subunit beta type-3 OS=Picea mariana GN=PBC1 PE=2 SV=1
Length = 204
Score = 139 bits (350), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 109/200 (54%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G A+VAM GKNCFAI D L TIA ++ ++ LY+ GL D ++
Sbjct: 7 NGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRIFKIHDKLYVGLSGLATDVQTLYQR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
R Y E+ + P+TFA++ S LY ++ P F P+IAG D + F+ T+D
Sbjct: 67 FAFRHKLYQLREERNMRPETFASLVSALLYEKRF-GPYFCQPVIAGLGEDD-KPFICTMD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G + DFV G+A + G ES ++P + PE+LFE SQ ++ + +RD SGWG
Sbjct: 125 SIGAKELAKDFVVAGTAAESLYGACESMYKPDMEPEELFETISQALLSSIDRDCLSGWGG 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VYVV P++V R + RMD
Sbjct: 185 HVYVVSPNQVIERTLKGRMD 204
>sp|Q9NDA1|PSB3_TRYBB Proteasome subunit beta type-3 OS=Trypanosoma brucei brucei GN=PSB3
PE=2 SV=1
Length = 205
Score = 138 bits (347), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 110/199 (55%), Gaps = 1/199 (0%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
GG+ +AMAGK CF + D+ L + TI+ K+H ++ + + GL D FA+K+
Sbjct: 8 GGSCLAMAGKECFVVISDNRLGEQLKTISMEVPKLHVINDGIVMGLTGLRTDQQTFAQKV 67
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
RT Y E+ I+ FAA+ S LY + P F+ P+I +GEV+L D+
Sbjct: 68 NFRTEMYKLREERDINGKAFAALVSSMLYEARF-GPWFVEPVIGTIDRKTGEVYLCATDL 126
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
G D+V G+ + G+ E+ W+PGL PE+LFEV +Q ++ AC+RD+ SG+GA
Sbjct: 127 IGAPCEPEDYVCAGTCAESLHGMCEALWRPGLEPEELFEVAAQAMLSACDRDSLSGYGAV 186
Query: 186 VYVVEPDKVTIRKIATRMD 204
+V DK+ R I R D
Sbjct: 187 AAIVTKDKLVTRLIKGRKD 205
>sp|O81153|PSB3B_ARATH Proteasome subunit beta type-3-B OS=Arabidopsis thaliana GN=PBC2
PE=1 SV=1
Length = 204
Score = 135 bits (340), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 108/200 (54%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G A+VAM GKNCFAI D L TIA ++ ++ HL++ GL D ++
Sbjct: 7 NGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDHLFIGLSGLATDVQTLYQR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E+ + P+TFA++ S LY ++ P P+IAG D + F+ T+D
Sbjct: 67 LVFRHKLYQLREERDMKPETFASLVSAILYEKRF-GPFLCQPVIAGL-GDDNKPFICTMD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G + DFV G+A + G E+ ++P + E+LFE SQ ++ + +RD SGWG
Sbjct: 125 SIGAKELAKDFVVSGTASESLYGACEAMFKPDMEAEELFETISQALLSSVDRDCLSGWGG 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VYVV P +V R + RMD
Sbjct: 185 HVYVVTPKEVKERILKGRMD 204
>sp|Q23237|PSB3_CAEEL Proteasome subunit beta type-3 OS=Caenorhabditis elegans GN=pbs-3
PE=1 SV=1
Length = 204
Score = 134 bits (338), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 105/199 (52%), Gaps = 2/199 (1%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
GG +VAMAG C I D + + TIA + KVH+++ +Y+ G +D EK+
Sbjct: 8 GGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDARTVLEKI 67
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
R Y E I P + + S Y + S F P++AG D+ + ++ +D
Sbjct: 68 MFRKNLYELRENRNIKPQVLSEMISNLAYQHRFGS-YFTEPLVAGL-DDTNKPYICCMDT 125
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
GC + DFVA G+ Q ++G+ E+FW+ + P++LFE +Q ++ ERD SGWGA
Sbjct: 126 IGCVSAPRDFVAVGTGQEYLLGVCENFWRENMKPDELFEATAQSILSCLERDAASGWGAV 185
Query: 186 VYVVEPDKVTIRKIATRMD 204
VY + DKV + I RMD
Sbjct: 186 VYTITKDKVNVSTIKARMD 204
>sp|Q9LST7|PSB3_ORYSJ Proteasome subunit beta type-3 OS=Oryza sativa subsp. japonica
GN=PBC1 PE=2 SV=1
Length = 204
Score = 132 bits (333), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 106/200 (53%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G A+VAM GKNCFAI D L T+A +V ++ LY+ GL D ++
Sbjct: 7 NGSAVVAMVGKNCFAIASDRRLGVQLQTVATDFQRVFKIHDKLYIGLSGLATDAQTLYQR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E+ + P TFA++ S LY ++ P F P+IAG D+ E F+ T+D
Sbjct: 67 LVFRHKLYQLREERDMKPQTFASLVSALLYEKRF-GPYFCQPVIAGLGEDN-EPFICTMD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G + DFV G+A + G ES ++P + PE+LFE SQ + + +RD SGWG
Sbjct: 125 CIGAKELAKDFVVSGTASESLYGACESMYKPNMEPEELFETISQALQSSVDRDCLSGWGG 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
V +V P +V I RMD
Sbjct: 185 FVLLVTPTEVKECVIKGRMD 204
>sp|Q9XI05|PSB3A_ARATH Proteasome subunit beta type-3-A OS=Arabidopsis thaliana GN=PBC1
PE=1 SV=2
Length = 204
Score = 129 bits (324), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 107/200 (53%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+G A+VAM GKNCFAI D L TIA ++ ++ +++ GL D ++
Sbjct: 7 NGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRVFIGLSGLATDVQTLYQR 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E+ + P+TFA++ S LY ++ P P+IAG D + F+ T+D
Sbjct: 67 LVFRHKLYQLREERDMKPETFASLVSAILYEKRF-GPYLCQPVIAGL-GDDDKPFICTMD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G + DFV G+A + G E+ ++P + E+LFE SQ ++ + +RD SGWG
Sbjct: 125 SIGAKELAKDFVVSGTASESLYGACEAMYKPDMEAEELFETISQALLSSVDRDCLSGWGG 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VY+V P ++ R + RMD
Sbjct: 185 HVYIVTPTEIKERILKGRMD 204
>sp|Q9Y7T8|PSB3_SCHPO Probable proteasome subunit beta type-3 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pup3 PE=3 SV=1
Length = 204
Score = 125 bits (314), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 98/200 (49%), Gaps = 2/200 (1%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG+ VAMAGKNC AI D L ++ KV M YL GL D E
Sbjct: 7 NGGSCVAMAGKNCVAIASDLRLGVQSISLTNNFPKVFAMGDKTYLGLTGLATDVQTLYEL 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ Y E+ I P TFA + S LY ++ P F P++AG D+ F+ D
Sbjct: 67 FRYKVNLYKFREERQIQPKTFANLVSSTLYEKRF-GPYFSFPVVAGVSNDNTP-FICGFD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
GC DF+ G+A + G+ ES ++P L P+ LFE SQ ++ A +RD SGWG
Sbjct: 125 SIGCIDFAEDFIVSGTATEQLYGMCESVYEPNLEPDDLFETISQALLNAQDRDCISGWGC 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
VYV+ DK R + R D
Sbjct: 185 VVYVITADKCIKRLVKGRQD 204
>sp|Q55D66|PSB3_DICDI Proteasome subunit beta type-3 OS=Dictyostelium discoideum GN=psmB3
PE=3 SV=1
Length = 205
Score = 110 bits (275), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 100/200 (50%), Gaps = 1/200 (0%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GGA + M GKNC AI D TI+ KV++++ ++ GL D +K
Sbjct: 7 NGGACIVMVGKNCVAIASDLRFGIQQQTISNDFPKVYRINDKCFVGISGLVTDAQTLYQK 66
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y E+ +SP + + + LY ++ P F P+I G F+S +D
Sbjct: 67 LVFRHNLYKLREERDMSPRVVSNLLTNMLYEKRF-GPYFTEPLICGLEGPDNTPFISGMD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+ G DF+ G+ + G+ E+ ++ ++ + LFE SQ ++ + +RD SGWGA
Sbjct: 126 LIGASVATDDFLVVGTMTPAMYGVCETLYKKDMNEDDLFETISQCMLASLDRDALSGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
V+V+ P +V +K+ R D
Sbjct: 186 IVHVITPTQVITKKLLGRQD 205
>sp|Q9N9W8|PSB3_GIAIN Proteasome subunit beta type-3 OS=Giardia intestinalis GN=PRSBETA3
PE=2 SV=1
Length = 207
Score = 100 bits (250), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 103/203 (50%), Gaps = 6/203 (2%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLL--VQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
+G A++ + G +C A+ D L TI E ++ ++S L GL D +
Sbjct: 8 NGSALIGIKGXDCVALAADKRLGCSYQTLTIGN-EERIFRLSQSCLLGLAGLQTDVLTTY 66
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLST 122
++ +++ Y E I P A + S LY + P FI+PIIAGF D G+ +L
Sbjct: 67 RQIRMKSNLYHLQEDREIRPRATAKMISSFLYKHRF-GPYFISPIIAGFEAD-GKPYLGA 124
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGW 182
+D GC T+F G+A + ++G+ E+ +P +S +++ + Q++ A RD SGW
Sbjct: 125 MDTIGCLDDCTNFQIAGTASDFLLGLCETHVKPDMSEDEILPLMEQIIRSATNRDAYSGW 184
Query: 183 GATVYVVEPDKVTIR-KIATRMD 204
GA V V+ D T I+TRMD
Sbjct: 185 GAHVVVLRRDGTTSDIPISTRMD 207
>sp|P40304|PSB1_DROME Proteasome subunit beta type-1 OS=Drosophila melanogaster GN=Pros26
PE=2 SV=2
Length = 235
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 97/212 (45%), Gaps = 14/212 (6%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG+IVA+AG + I D L G + ++K+ ++SP L + G AD +
Sbjct: 27 SNGGSIVAIAGDDFAVIAADTRLSSGYNIHSRTQSKLFKLSPQTVLGSAGCWADTLSLTG 86
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ +R +Y + ++ + A + S +Y R+ P +++ I+AG + V S
Sbjct: 87 SIKVRMQSYEHTHLRTMTTEAVAQMLSIAMYNRRFF-PYYVSNILAGIDNEGKGVVYSYD 145
Query: 124 DMAGCETRKTDFVAGGSAQNMIM-----GIG------ESFWQPGLSPEQLFEVCSQVVIQ 172
+ CE K + AGG+A ++ IG E + L+ E+ V S I
Sbjct: 146 PIGHCE--KATYRAGGTAGTLLQPVLDNQIGHKNMNLEDADKIKLTKERAVSVASDTFIS 203
Query: 173 ACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A ERD +G + ++ D + +R + R D
Sbjct: 204 AAERDIYTGDSVLINIITKDGIEVRTLTLRQD 235
>sp|A8AB58|PSB2_IGNH4 Proteasome subunit beta 2 OS=Ignicoccus hospitalis (strain KIN4/I /
DSM 18386 / JCM 14125) GN=psmB2 PE=3 SV=1
Length = 212
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 88/192 (45%), Gaps = 5/192 (2%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G V + + + D G+F + + K+ ++S ++ + GL AD A+ +
Sbjct: 13 GTTTVGIRSEKAVVLAADKRATAGNFIVHKRVEKIVKISDYMAMTTAGLVADAQVLADVL 72
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
+ NY + +S A S L++ + P + ++ GF D+ L +LD
Sbjct: 73 RMEVKNYELFHKKRMSVKAAATFLSNVLHSARF-YPYIVQLLVGGF--DTAP-RLYSLDW 128
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
G + +F+ GS M +G+ E+ + P + E+L + + V A RDT SG G
Sbjct: 129 FGT-VAEEEFLVTGSGSPMAVGVIEAEYNPNMDLEELVNLAVRAVFAATRRDTASGEGID 187
Query: 186 VYVVEPDKVTIR 197
V V++ + +T+R
Sbjct: 188 VAVIDRNGITMR 199
>sp|A0B5B1|PSB_METTP Proteasome subunit beta OS=Methanosaeta thermophila (strain DSM
6194 / PT) GN=psmB PE=3 SV=1
Length = 207
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 79/189 (41%), Gaps = 13/189 (6%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
DGG ++A + G F + K++Q+ + L G+ D
Sbjct: 16 DGGVVLASESRATM----------GSFIASRTAKKIYQIDDLVGLTTAGVVGDAQALVRM 65
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ Y P++ ++ S L AR+ P + ++ G ++F +LD
Sbjct: 66 IQAEARLYRMQRGEPLTIKAITSLLSNILSARRYF-PFLVQLVVGGVDKMGPKIF--SLD 122
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G + + D V+ GS + G+ ES ++PGLS + +C + V A +RD+ SG G
Sbjct: 123 ALGGQIEEHDIVSTGSGSPIAYGVLESLYKPGLSIQDGSVLCVRAVHTAMKRDSASGNGI 182
Query: 185 TVYVVEPDK 193
+ + D+
Sbjct: 183 ALVRITKDR 191
>sp|D1Z199|PSB_METPS Proteasome subunit beta OS=Methanocella paludicola (strain DSM
17711 / JCM 13418 / NBRC 101707 / SANAE) GN=psmB PE=3
SV=1
Length = 205
Score = 60.8 bits (146), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 84/191 (43%), Gaps = 5/191 (2%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G V + N + + G+ + K++Q++ ++ + G DG + A +
Sbjct: 8 GTTTVGIICNNGLVLATERRATMGNLIASRDAQKIYQLTDNIAMTIAGSVGDGQRLARML 67
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
+ + P+S + + + S L+ ++ +I ++ G ++F +LD
Sbjct: 68 QAESKLFELRRHGPMSINALSMLLSNLLWEYRI---FYIQVLVGGVDKSGPKLF--SLDP 122
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
AG + F + GS + G+ E ++ +S EQ E+ ++ + A +RD+ SG G
Sbjct: 123 AGGRITEVKFSSTGSGSPLAYGVLEDRYKQDMSVEQGVELAAKALESAMKRDSASGNGMQ 182
Query: 186 VYVVEPDKVTI 196
V+ P KV I
Sbjct: 183 FCVITPGKVEI 193
>sp|Q8TW10|PSB_METKA Proteasome subunit beta OS=Methanopyrus kandleri (strain AV19 / DSM
6324 / JCM 9639 / NBRC 100938) GN=psmB PE=3 SV=1
Length = 210
Score = 60.5 bits (145), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 77/188 (40%), Gaps = 4/188 (2%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
L G V + + D V G+ + K+ ++ ++ + G AD +
Sbjct: 7 LTKGTTTVGILADKGVVLAADRRAVMGNLIAGKQVKKIFRIHDYIGVTTAGSVADAQKIV 66
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYAR-KLTSPLFINPIIAGFYPDSGEVFLS 121
+ M Y IS A + S L++ K P + I+ GF D ++
Sbjct: 67 DLMRAEARLYELRHNRMISARALANMISHVLHSSLKAFRPYLVQLIVGGFNDDDPALY-- 124
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
LD +G + D+ A GS G+ E+ ++ G+S + EV + V A ERDT +G
Sbjct: 125 NLDPSGSIIEE-DYTATGSGSPTAYGVLEAEYEEGMSLDDAIEVAVRAVKSALERDTGTG 183
Query: 182 WGATVYVV 189
G TV +
Sbjct: 184 EGVTVVTI 191
>sp|B8D673|PSB1_DESK1 Proteasome subunit beta 1 OS=Desulfurococcus kamchatkensis (strain
1221n / DSM 18924) GN=psmB1 PE=3 SV=1
Length = 202
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 78/173 (45%), Gaps = 4/173 (2%)
Query: 31 FTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAIAS 90
F ++ K+H ++ H+ + GL D + + L NY I + A + S
Sbjct: 32 FVLSRNARKIHMITNHIGVGFAGLMGDVNFLVKVLRLEAKNYELQHGREIKTRSLAKLLS 91
Query: 91 WELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGE 150
LY+ KL +P+ ++ G+ + +++ LD G + +VA GS + +G E
Sbjct: 92 VILYSYKL-APMLTEVVVGGYDEEGPSLYI--LDPVGSVIEE-KYVAVGSGAQLALGYIE 147
Query: 151 SFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRM 203
+ PGL ++ E+ V ERD SG G + V++ + ++I +M
Sbjct: 148 PRYNPGLGLKEAEELAVNAVKTVIERDVLSGDGIDLVVIDKNGYQSKEIIFKM 200
>sp|A3DN21|PSB1_STAMF Proteasome subunit beta 1 OS=Staphylothermus marinus (strain ATCC
43588 / DSM 3639 / F1) GN=psmB1 PE=3 SV=1
Length = 213
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 86/198 (43%), Gaps = 4/198 (2%)
Query: 7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMT 66
G ++ + N I + L + +++ KVH ++ H+ + GL D +
Sbjct: 18 GTVLGIKAVNGVVIAGEKRLTYDGYVLSKNTRKVHPITKHVGIGFAGLVGDAQFIIRALR 77
Query: 67 LRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMA 126
+ NY I A I S LY+ KL +PL ++ GF ++++ LD
Sbjct: 78 MEAENYELQLGREIRVRGLAKILSLILYSYKL-APLMTEVVVGGFDEKGPQIYV--LDPV 134
Query: 127 GCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATV 186
G + +VA GS + +GI E ++ + ++ ++ + +A ERD SG G V
Sbjct: 135 GSLI-EDKYVALGSGGPIALGIIEKEYREDIDVDEAEKLAVSAIREAIERDAVSGDGVDV 193
Query: 187 YVVEPDKVTIRKIATRMD 204
+ + ++R+ R +
Sbjct: 194 LRITEEGYSLREYMFRRE 211
>sp|P34286|PSB1_CAEEL Proteasome subunit beta type-1 OS=Caenorhabditis elegans GN=pbs-6
PE=1 SV=2
Length = 258
Score = 57.0 bits (136), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 94/212 (44%), Gaps = 15/212 (7%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYE-NKVHQMSPHLYLINPGLCADGMQFAE 63
+GG+ A++G+N + D + Q D I + K+ ++ ++ L G D +Q +
Sbjct: 50 EGGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKK 109
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y +S +S D A + S LY R+ P + I+AG + G+ + +
Sbjct: 110 VLQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFF-PYYTGAILAGI-DEHGKGAVFSY 167
Query: 124 DMAGCETRKTDFVAGGSAQNMIM----------GIGESFWQPGLSPEQLFEVCSQVVIQA 173
D GC + + A G+A+ MI+ + E + +P L+ ++ + A
Sbjct: 168 DPIGC-IERLGYSASGAAEPMIIPFLDCQIGHVTLSEGYERPELTLDRAISLMKDSFRGA 226
Query: 174 CERDTKSGWGATVYVVEPDK-VTIRKIATRMD 204
ER+ +G + + E K V ++ + R D
Sbjct: 227 AEREISTGDKIHLVIAEAGKPVVVKFLPLRED 258
>sp|A7I841|PSB_METB6 Proteasome subunit beta OS=Methanoregula boonei (strain 6A8)
GN=psmB PE=3 SV=1
Length = 213
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 71/156 (45%), Gaps = 3/156 (1%)
Query: 38 NKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARK 97
KV+Q++ + + G D Q A +T+ Y I+ + + S L +
Sbjct: 43 KKVYQIADRIGMTIAGGVGDAQQLARIITVECNLYQIRRSREITVGAASTLLSNYLNQNR 102
Query: 98 LTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGL 157
P ++ ++ G V+ ++D G T++ D V+ GS M G+ E ++PG+
Sbjct: 103 YF-PYYVQLLVGGIDDHGPSVY--SVDAMGGATKEEDIVSTGSGSPMAYGVLEDRYRPGM 159
Query: 158 SPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDK 193
+ ++ E+ + + A +RD SG G V V+ D+
Sbjct: 160 NEDEAVELAVRALRSAMKRDAGSGEGIHVVVITKDR 195
>sp|A2BN27|PSB2_HYPBU Proteasome subunit beta 2 OS=Hyperthermus butylicus (strain DSM
5456 / JCM 9403) GN=psmB2 PE=3 SV=1
Length = 212
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 79/187 (42%), Gaps = 5/187 (2%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G V + ++ + D G F + K+ +++ ++ + GL AD AE +
Sbjct: 15 GTTTVGIVFRDFVVLAADRRATAGYFVAHKRTKKIIKITDYMAMTTAGLVADAQMLAEWL 74
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
T Y + +S A S L++ K P + ++ G+ + L +D
Sbjct: 75 ANHTHYYEIVNKRRMSIHAAAQYLSIILHSAKF-YPYIVQLLLGGY---DTQPRLYNIDW 130
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
G T + +VA GS +G+ E + P LS E+ E+ + V + RDT +G G
Sbjct: 131 FGSVTEE-KYVATGSGSPTAIGVIEDQYSPNLSMEEAVELAKRAVASSIRRDTFTGNGVD 189
Query: 186 VYVVEPD 192
V V+ D
Sbjct: 190 VVVIGKD 196
>sp|Q86A21|PSB1_DICDI Proteasome subunit beta type-1 OS=Dictyostelium discoideum GN=psmB1
PE=3 SV=1
Length = 236
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 95/213 (44%), Gaps = 14/213 (6%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYE-NKVHQMSPHLYLINPGLCADGMQF 61
+++GG ++A+AGK+ I D + G + I + K+ Q++ L G+ AD +
Sbjct: 27 VDNGGTVLAVAGKDYCVIAGDTRMSDGGYGIQTRKYTKIFQLTKKCVLATSGMQADTIAL 86
Query: 62 AEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLS 121
+++ ++ P+S A S LY ++ P + ++AG + GE ++
Sbjct: 87 QKRLKSMLESFEKEHGKPMSTPAIAQFLSNTLYYKRFF-PYYTFNLVAGV-DEQGEGWIW 144
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGES----FWQ------PGLSPEQLFEVCSQVVI 171
T D G R + + GS +++ + ++ F Q +S EQ+ +
Sbjct: 145 TYDAVGSHER-VKYSSQGSGNQLVIPLLDNQVAKFNQQIVEGNKDVSCEQVVSFVKDSIT 203
Query: 172 QACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A ERD +G A + VV+ + V K ++D
Sbjct: 204 SAGERDIYTGDFADIVVVDKNGVHWEKFELKLD 236
>sp|Q0W2D6|PSB_UNCMA Proteasome subunit beta OS=Uncultured methanogenic archaeon RC-I
GN=psmB PE=3 SV=1
Length = 208
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 78/168 (46%), Gaps = 3/168 (1%)
Query: 29 GDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAI 88
G+F + K+++++ + + G DG + A + + + +S + + +
Sbjct: 32 GNFIASRDAQKIYRITDNAAMTIAGSVGDGQRLARILQVEAKLFELRRHGSMSINALSML 91
Query: 89 ASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGI 148
S + A +P ++ +I G +++ +LD G + FV+ GS + G+
Sbjct: 92 LS-NILAEMRYAPYYVQVLIGGLDKAGPKIY--SLDPLGGRIEEEKFVSTGSGSPIAYGV 148
Query: 149 GESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTI 196
E ++PG+S E+ E+ ++ + A +RD+ SG G V+ +K I
Sbjct: 149 LEDRYKPGMSVEEGVELAARALESAMKRDSASGNGMQFCVITAEKFEI 196
>sp|Q9IB83|PSB1B_CARAU Proteasome subunit beta type-1-B OS=Carassius auratus GN=psmb1-B
PE=2 SV=1
Length = 237
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 90/209 (43%), Gaps = 12/209 (5%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG ++A+AG++ + D L +G + K ++++ + G D + +
Sbjct: 32 NGGTVLAVAGEDFALVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDCLTLTKI 91
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y S ++ AA+ S LY R+ P ++ II G + G + + D
Sbjct: 92 IEARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFF-PYYVYNIIGGL-DEEGRGAVYSFD 149
Query: 125 MAGCETRKTDFVAGGSAQNMIM-----GIG----ESFWQPGLSPEQLFEVCSQVVIQACE 175
G R T + AGGSA M+ IG E+ Q LS E+ ++ V I A E
Sbjct: 150 PVGSYQRDT-YKAGGSASAMLQPLLDNQIGFKNMENVEQVPLSQEKAVQLVKDVFISAAE 208
Query: 176 RDTKSGWGATVYVVEPDKVTIRKIATRMD 204
RD +G + ++ + + + R D
Sbjct: 209 RDVYTGDALKICIITKEGIREEIVPLRKD 237
>sp|Q9IB84|PSB1A_CARAU Proteasome subunit beta type-1-A OS=Carassius auratus GN=psmb1-A
PE=2 SV=1
Length = 238
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 90/209 (43%), Gaps = 12/209 (5%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
+GG ++A+AG++ + D L +G + K ++++ + G D + +
Sbjct: 33 NGGTVLAVAGEDFALVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDCLTLTKI 92
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ R Y S ++ AA+ S LY R+ P ++ II G + G + + D
Sbjct: 93 IEARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFF-PYYVYNIIGGL-DEEGRGAVYSFD 150
Query: 125 MAGCETRKTDFVAGGSAQNMIM-----GIG----ESFWQPGLSPEQLFEVCSQVVIQACE 175
G R T + AGGSA M+ IG E+ Q LS E+ ++ V I A E
Sbjct: 151 PVGSYQRDT-YKAGGSASAMLQPLLDNQIGFKNMENVEQVPLSQEKAVQLVKDVFISAAE 209
Query: 176 RDTKSGWGATVYVVEPDKVTIRKIATRMD 204
RD +G + ++ + + + R D
Sbjct: 210 RDVYTGDALKICIITKEGIREEIVPLRKD 238
>sp|Q8SR11|PSB1_ENCCU Probable proteasome subunit beta type-1 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=PRE3 PE=1 SV=1
Length = 203
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 7/176 (3%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G I+A+ + IG D G + + +K+ Q++ +++ G AD + +
Sbjct: 10 GTTIIAIKYDDGVLIGADSRTSMGAYVSSRVTDKLTQITDKIFVCRSGSSADTQMISSYL 69
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
+ + Y E S AA+AS +Y +P + +I Y D VF + +
Sbjct: 70 RMYLSMYSQLEDSIPQVQRAAALASKIIY----ENPSLLAGLIVAGYDDKPRVF--NISL 123
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
G T + D+ GGS I G + W+ G+S E+ V A RD SG
Sbjct: 124 GGSLTER-DWAIGGSGSAFIYGYCDVNWRSGMSLEEGIRFVRNAVSCAINRDNASG 178
>sp|P20618|PSB1_HUMAN Proteasome subunit beta type-1 OS=Homo sapiens GN=PSMB1 PE=1 SV=2
Length = 241
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 94/210 (44%), Gaps = 14/210 (6%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN-KVHQMSPHLYLINPGLCADGMQFAE 63
+GG I+A+AG++ + D L +G F+I ++ K ++++ + G D + +
Sbjct: 36 NGGTILAIAGEDFAIVASDTRLSEG-FSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 94
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y S ++ AA+ S LY+R+ P ++ II G + G+ + +
Sbjct: 95 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFF-PYYVYNIIGGL-DEEGKGAVYSF 152
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGI---------GESFWQPGLSPEQLFEVCSQVVIQAC 174
D G R + F AGGSA M+ + ++ LS ++ + V I A
Sbjct: 153 DPVGSYQRDS-FKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAA 211
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G + +V + + ++ R D
Sbjct: 212 ERDVYTGDALRICIVTKEGIREETVSLRKD 241
>sp|Q2TBX6|PSB1_BOVIN Proteasome subunit beta type-1 OS=Bos taurus GN=PSMB1 PE=1 SV=1
Length = 241
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 93/210 (44%), Gaps = 14/210 (6%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN-KVHQMSPHLYLINPGLCADGMQFAE 63
+GG ++A+AG++ + D L +G F+I ++ K ++++ + G D + +
Sbjct: 36 NGGTVLAIAGEDFSIVASDTRLSEG-FSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 94
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y S ++ AA+ S LY+R+ P ++ II G + G+ + +
Sbjct: 95 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFF-PYYVYNIIGGL-DEEGKGAVYSF 152
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGI---------GESFWQPGLSPEQLFEVCSQVVIQAC 174
D G R + F AGGSA M+ + ++ LS ++ + V I A
Sbjct: 153 DPVGSYQRDS-FKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAA 211
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G V +V + + + R D
Sbjct: 212 ERDVYTGDALKVCIVTKEGIRGETVPLRKD 241
>sp|A9A4A1|PSB1_NITMS Proteasome subunit beta 1 OS=Nitrosopumilus maritimus (strain SCM1)
GN=psmB1 PE=3 SV=1
Length = 198
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 82/192 (42%), Gaps = 23/192 (11%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCAD----GMQ 60
DGG + A + F G+F +++ K ++P + GL AD +Q
Sbjct: 16 DGGVVFASEKRIAF----------GNFLVSKTTKKTFPITPKVGATCAGLVADMQILSLQ 65
Query: 61 FAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFL 120
A +R + + P+T A + S +Y R+ PL I+ G + +
Sbjct: 66 IAALAKIRKMEL----KRDVPPNTVAKMMSNMMYERRY-FPLLTQVIVGGVV---DKPIM 117
Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKS 180
TLD G ++ A G+ M +G+ + ++P ++ ++ ++ + V A RD+ S
Sbjct: 118 YTLDPLGS-VLPDEYAAVGTGAEMALGVLDPQFKPNMTKDEAIDLAKRAVRAASLRDSAS 176
Query: 181 GWGATVYVVEPD 192
G G V V+ D
Sbjct: 177 GDGVDVLVITKD 188
>sp|Q9HR36|PSB_HALSA Proteasome subunit beta OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=psmB PE=3 SV=2
Length = 243
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 65/158 (41%), Gaps = 8/158 (5%)
Query: 39 KVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKL 98
KV ++ P+ L G F + Y A +S D + +AS L
Sbjct: 82 KVEEIQPNAALSISGSVGGAQSFIRSLRAEANLYEARRGEYMSIDALSTMASNLLRG--- 138
Query: 99 TSPLF-INPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGL 157
P F + PI+ G D G VF +LD AG T + A GS +G+ E + L
Sbjct: 139 -GPFFRVVPILGGVDDDGGHVF--SLDPAGSSMSDT-YTAQGSGMPYALGVLEQEYSEDL 194
Query: 158 SPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVT 195
+ +V + V A ERDT SG G + + D +T
Sbjct: 195 TMADAEQVAAHAVKSASERDTASGNGIHITKITHDGLT 232
>sp|B0R4C8|PSB_HALS3 Proteasome subunit beta OS=Halobacterium salinarum (strain ATCC
29341 / DSM 671 / R1) GN=psmB PE=3 SV=1
Length = 243
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 65/158 (41%), Gaps = 8/158 (5%)
Query: 39 KVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKL 98
KV ++ P+ L G F + Y A +S D + +AS L
Sbjct: 82 KVEEIQPNAALSISGSVGGAQSFIRSLRAEANLYEARRGEYMSIDALSTMASNLLRG--- 138
Query: 99 TSPLF-INPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGL 157
P F + PI+ G D G VF +LD AG T + A GS +G+ E + L
Sbjct: 139 -GPFFRVVPILGGVDDDGGHVF--SLDPAGSSMSDT-YTAQGSGMPYALGVLEQEYSEDL 194
Query: 158 SPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVT 195
+ +V + V A ERDT SG G + + D +T
Sbjct: 195 TMADAEQVAAHAVKSASERDTASGNGIHITKITHDGLT 232
>sp|B1L6X8|PSB2_KORCO Proteasome subunit beta 2 OS=Korarchaeum cryptofilum (strain OPF8)
GN=psmB2 PE=3 SV=1
Length = 198
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 79/185 (42%), Gaps = 13/185 (7%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
DGG ++A D + F +++ KV ++ + + GL D + +
Sbjct: 12 DGGVVLA----------ADRRVSYNGFILSKSARKVFLINERVGVSTAGLPGDFQELVDV 61
Query: 65 MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ Y + +P A + S LY + + + ++ G ++F+ LD
Sbjct: 62 LKYNITMYELENEKAATPTNVAKLLSILLYQGRFSGIYYAELVVGGIDNSGPKIFV--LD 119
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
AG + +F A GS + GI E F++ G+S ++ E+ + + +A RD SG G
Sbjct: 120 PAGG-LMEENFSAVGSGAQIATGILERFFKEGMSEKEAVELAERAMREAISRDALSGDGI 178
Query: 185 TVYVV 189
+ ++
Sbjct: 179 DLLII 183
>sp|O09061|PSB1_MOUSE Proteasome subunit beta type-1 OS=Mus musculus GN=Psmb1 PE=1 SV=1
Length = 240
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 93/210 (44%), Gaps = 14/210 (6%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN-KVHQMSPHLYLINPGLCADGMQFAE 63
+GG ++A+AG++ + D L +G F+I ++ K ++++ + G D + +
Sbjct: 35 NGGTVLAIAGEDFSIVASDTRLSEG-FSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 93
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y S ++ AA+ S LY+R+ P ++ II G + G+ + +
Sbjct: 94 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFF-PYYVYNIIGGL-DEEGKGAVYSF 151
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGI---------GESFWQPGLSPEQLFEVCSQVVIQAC 174
D G R + F AGGSA M+ + ++ L+ ++ + V I A
Sbjct: 152 DPVGSYQRDS-FKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLTLDRAMRLVKDVFISAA 210
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G + +V + + + R D
Sbjct: 211 ERDVYTGDALRICIVTKEGIREETVPLRKD 240
>sp|P18421|PSB1_RAT Proteasome subunit beta type-1 OS=Rattus norvegicus GN=Psmb1 PE=1
SV=3
Length = 240
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 93/210 (44%), Gaps = 14/210 (6%)
Query: 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN-KVHQMSPHLYLINPGLCADGMQFAE 63
+GG ++A+AG++ + D L +G F+I ++ K ++++ + G D + +
Sbjct: 35 NGGTVLAIAGEDFSIVASDTRLSEG-FSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 93
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y S ++ AA+ S LY+R+ P ++ II G + G+ + +
Sbjct: 94 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFF-PYYVYNIIEGL-DEEGKGAVYSF 151
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGI---------GESFWQPGLSPEQLFEVCSQVVIQAC 174
D G R + F AGGSA M+ + ++ L+ ++ + V I A
Sbjct: 152 DPVGSYQRDS-FKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLTLDRAMRLVKDVFISAA 210
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G + +V + + + R D
Sbjct: 211 ERDVYTGDALRICIVTKEGIREETVPLRKD 240
>sp|Q60692|PSB6_MOUSE Proteasome subunit beta type-6 OS=Mus musculus GN=Psmb6 PE=1 SV=3
Length = 238
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 79/180 (43%), Gaps = 6/180 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ +G D G + +K+ + H++ G AD A
Sbjct: 30 VSTGTTIMAVQFNGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVA 89
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSGEVFLS 121
+ +T + + P P A + ++ + L IIAG+ P + G+V+
Sbjct: 90 DAVTYQLGFHSIELNEP--PLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVY-- 145
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
++ M G R++ F GGS + I G ++ ++ G++ ++ + + + A ERD SG
Sbjct: 146 SVPMGGMMVRQS-FAIGGSGSSYIYGYVDATYREGMTKDECLQFTANALALAMERDGSSG 204
>sp|D2RUI0|PSB2_HALTV Proteasome subunit beta 2 OS=Haloterrigena turkmenica (strain ATCC
51198 / DSM 5511 / NCIMB 13204 / VKM B-1734) GN=psmB2
PE=3 SV=1
Length = 237
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 71/170 (41%), Gaps = 8/170 (4%)
Query: 29 GDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAI 88
G F + KV Q+ P L G F + Y + P+ + A +
Sbjct: 66 GRFVSNKNVQKVEQIHPTGALTLVGSVGGAQSFIRTLRAEVNLYESRRGEPMPIEALATL 125
Query: 89 ASWELYARKLTSPLF-INPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMG 147
A +AR P INPI+ G + V+ ++D AG D+ GS + G
Sbjct: 126 AGN--FARG--GPFRAINPILGGVDEEGSHVY--SIDPAGG-VMADDYTVTGSGMQLAYG 178
Query: 148 IGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIR 197
+ E ++ GLS E+ V ++ + A ERDT SG G + V + V I+
Sbjct: 179 LLEQEYEEGLSLEEAQSVAARAIESAVERDTGSGNGVFLAAVTGEGVDIQ 228
>sp|P28073|PSB6_RAT Proteasome subunit beta type-6 OS=Rattus norvegicus GN=Psmb6 PE=1
SV=3
Length = 238
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 79/180 (43%), Gaps = 6/180 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ +G D G + +K+ + H++ G AD A
Sbjct: 30 VSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVA 89
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSGEVFLS 121
+ +T + + P P A + ++ + L IIAG+ P + G+V+
Sbjct: 90 DAVTYQLGFHSIELNEP--PLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVY-- 145
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
++ M G R++ F GGS + I G ++ ++ G++ ++ + + + A ERD SG
Sbjct: 146 SVPMGGMMVRQS-FAIGGSGSSYIYGYVDATYREGMTKDECLQFTANALALAMERDGSSG 204
>sp|A2BN24|PSB1_HYPBU Proteasome subunit beta 1 OS=Hyperthermus butylicus (strain DSM
5456 / JCM 9403) GN=psmB1 PE=3 SV=1
Length = 204
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 82/192 (42%), Gaps = 3/192 (1%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G V + G + + + G F I++ KV++++ +L L GL AD ++ +
Sbjct: 8 GATAVGIRGAGYVVLAAEKRVSYGGFIISKTARKVYKITDYLGLALAGLFADLQAISKIL 67
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
Y IS A + + LY+ K P ++ G D G L +D
Sbjct: 68 RAEIEYYNIVTGRRISVRAVARLLATILYSYKYY-PFLSETLVGGLEAD-GTAKLYVMDP 125
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
G + D+ A GS + +GI E+ + +S + ++ V A ERD SG G
Sbjct: 126 LGSLI-EDDYAAIGSGAPIAIGILENGYSKDMSVDDAKKLAIAAVRAAIERDAMSGDGID 184
Query: 186 VYVVEPDKVTIR 197
+ V+ ++ +I+
Sbjct: 185 LLVIRREEDSIK 196
>sp|A0RU86|PSB1_CENSY Proteasome subunit beta 1 OS=Cenarchaeum symbiosum (strain A)
GN=psmB1 PE=3 SV=1
Length = 193
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 82/176 (46%), Gaps = 15/176 (8%)
Query: 29 GDFTIAEYENKVHQMSPHLYLINPGLCAD----GMQFAEKMTLRTANYVASEQSPISPDT 84
G+F +++ K Q++P++ GL AD +Q + +R + + I P++
Sbjct: 26 GNFLVSKNTRKTFQITPYVGAACAGLVADMQILSLQISALAKIRKMDL----KRDIPPNS 81
Query: 85 FAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNM 144
A + S +Y R+ PL I+ G GE + TLD G ++ A G+ M
Sbjct: 82 VAKMMSNMMYERRFF-PLLTQVIVGGVV---GEPAIYTLDSLGS-VLPDEYAAVGTGAEM 136
Query: 145 IMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIA 200
+G+ + ++ G+S + ++ + + A RD+ SG G + ++ + R+IA
Sbjct: 137 ALGVLDPQFKSGMSEKDAVDLAVRGIRSAALRDSFSGDGLDILALDANGA--REIA 190
>sp|P22141|PSB4_YEAST Proteasome subunit beta type-4 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PRE1 PE=1 SV=2
Length = 198
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 84/191 (43%), Gaps = 10/191 (5%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
I+ + ++ + + +G + + ++K Q+SPH + G D +QFAE +
Sbjct: 4 ILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQAN 63
Query: 69 TANYVASEQSPISPDTFAAIASWELYARKLTS--PLFINPIIAGFYPDSGEVFLSTLDMA 126
Y E +SP ++ EL A+ + S P +N +I G+ + L +D
Sbjct: 64 IQLYSIREDYELSPQAVSSFVRQEL-AKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYL 122
Query: 127 GCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQ---LFEVCSQVVIQACERDTKSGWG 183
G + + + A G + + + ++P ++ E+ L ++C Q + + D K G
Sbjct: 123 GTKV-ELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLLKLCVQELEKRMPMDFK---G 178
Query: 184 ATVYVVEPDKV 194
V +V+ D +
Sbjct: 179 VIVKIVDKDGI 189
>sp|P28072|PSB6_HUMAN Proteasome subunit beta type-6 OS=Homo sapiens GN=PSMB6 PE=1 SV=4
Length = 239
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 78/180 (43%), Gaps = 6/180 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G I+A+ +G D G + +K+ + ++ G AD A
Sbjct: 31 VSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVA 90
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSGEVFLS 121
+ +T + + P P A + ++ + L IIAG+ P + G+V+
Sbjct: 91 DAVTYQLGFHSIELNEP--PLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVY-- 146
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
++ M G R++ F GGS + I G ++ ++ G++ E+ + + + A ERD SG
Sbjct: 147 SVPMGGMMVRQS-FAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSG 205
>sp|C5A7L1|PSB1_THEGJ Proteasome subunit beta 1 OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=psmB1 PE=3 SV=1
Length = 201
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 76/188 (40%), Gaps = 7/188 (3%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G V + ++ + D G+ ++ KV Q+ HL + GL D + +
Sbjct: 10 GTTTVGVVCRDGVVLAADRRATLGNMVTSKEVTKVFQIDDHLAIAGAGLVGDILSLVRLL 69
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELY-ARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
Y A +S A + S L+ +R L P F +I G+ L ++D
Sbjct: 70 RAEAKLYRAKVGREMSVKALATLVSNVLHGSRHL--PYFAWFLIGGYDVKP---RLYSID 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
AG T + F+A GS + + E + G+ ++ ++ + V A RD +G G
Sbjct: 125 AAGGVTEER-FIAAGSGMEFALALLEENFSDGMGLDEGIDLAVRAVKAAIRRDVYTGEGV 183
Query: 185 TVYVVEPD 192
TV + +
Sbjct: 184 TVVAITKE 191
>sp|B8D683|PSB2_DESK1 Proteasome subunit beta 2 OS=Desulfurococcus kamchatkensis (strain
1221n / DSM 18924) GN=psmB2 PE=3 SV=1
Length = 206
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 67/159 (42%), Gaps = 13/159 (8%)
Query: 38 NKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQS-----PISPDTFAAIASWE 92
K+ +++ + L GL AD E A Y+A E PI A+ S
Sbjct: 39 KKISKITDYAALTISGLVADAQYIVE-----NARYIAREYEIEMGGPIPIKALASRISLI 93
Query: 93 LYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESF 152
L SP + ++ G DS L +D+ G TR+ ++A GS + GI E
Sbjct: 94 LSVYLRYSPFIVQLLLGG--RDSTGASLYYMDLYGSVTRE-KYMATGSGSPVAFGILEKN 150
Query: 153 WQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEP 191
++ LS E+ ++ V A RD SG G + V+ P
Sbjct: 151 YRSDLSLEEAKKLAFNAVSSAIMRDGFSGEGVDIVVIGP 189
>sp|A8MBW0|PSB1_CALMQ Proteasome subunit beta 1 OS=Caldivirga maquilingensis (strain ATCC
700844 / DSMZ 13496 / JCM 10307 / IC-167) GN=psmB1 PE=3
SV=1
Length = 206
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 72/176 (40%), Gaps = 4/176 (2%)
Query: 15 KNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVA 74
K + D + G + K+ ++ H G AD ++T NY
Sbjct: 23 KEGVVLATDRRVTAGYYIAHRKGRKIWKIDNHAAATMSGAVADVQMILNELTHLAMNYRI 82
Query: 75 SEQSPISPDTFAAIASWEL-YARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKT 133
+ Q+P+ T A AS + Y+R + ++I +I G + L +D G TR+
Sbjct: 83 THQAPVPIKTLANYASVVMFYSRPM---IYIAHMIIGGVDNEEGPVLYAVDWYGSFTREE 139
Query: 134 DFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVV 189
F++ GS G+ E ++ +S + ++ ++ V A D SG G V +
Sbjct: 140 RFMSTGSGSPTAFGVLEDGYRDDMSLDDAVKLATRAVRAAMLHDPGSGEGVDVITI 195
>sp|Q5W416|PSB8_CANFA Proteasome subunit beta type-8 OS=Canis familiaris GN=PSMB8 PE=1
SV=1
Length = 276
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 81/188 (43%), Gaps = 6/188 (3%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G +A ++ + VD G++ + NKV +++P L G CA Q+ E++
Sbjct: 72 GTTTLAFKFQHGVIVAVDSRATAGNYISSSRVNKVIEINPSLLGTMSG-CAADCQYWERL 130
Query: 66 TLRTAN-YVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ Y IS + + S +Y + L + +I G+ D L +D
Sbjct: 131 LAKECRLYYLRNGERISVSAASKLLSNMVYQYR-GMDLSMGSMICGW--DKKGPGLYYVD 187
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
G F + GS G+ +S +QP LSPE+ +E+ + + A RD+ SG
Sbjct: 188 QNGTRLSGNMF-STGSGSTYAYGVMDSGYQPSLSPEEAYELGRRAITYATHRDSYSGGII 246
Query: 185 TVYVVEPD 192
+Y ++ D
Sbjct: 247 NMYHMKED 254
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,342,495
Number of Sequences: 539616
Number of extensions: 3047113
Number of successful extensions: 6552
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 6412
Number of HSP's gapped (non-prelim): 152
length of query: 204
length of database: 191,569,459
effective HSP length: 112
effective length of query: 92
effective length of database: 131,132,467
effective search space: 12064186964
effective search space used: 12064186964
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)