Query psy1779
Match_columns 204
No_of_seqs 123 out of 1098
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 23:04:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1779.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1779hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03757 proteasome_beta_type_1 100.0 2.4E-52 5.1E-57 332.3 25.3 199 3-204 5-212 (212)
2 cd03759 proteasome_beta_type_3 100.0 2.4E-51 5.3E-56 322.7 25.7 193 4-199 1-194 (195)
3 cd03758 proteasome_beta_type_2 100.0 5.8E-50 1.3E-54 314.3 25.0 191 7-199 2-193 (193)
4 cd03761 proteasome_beta_type_5 100.0 2.8E-49 6.1E-54 309.3 25.1 187 7-197 1-187 (188)
5 cd03760 proteasome_beta_type_4 100.0 2.6E-49 5.6E-54 311.7 24.9 191 5-197 1-195 (197)
6 TIGR03634 arc_protsome_B prote 100.0 3.6E-48 7.9E-53 302.3 24.5 185 6-194 1-185 (185)
7 COG0638 PRE1 20S proteasome, a 100.0 3.4E-48 7.3E-53 312.4 24.4 190 4-196 28-219 (236)
8 cd03762 proteasome_beta_type_6 100.0 8.5E-48 1.9E-52 301.0 25.4 187 7-197 1-187 (188)
9 cd03764 proteasome_beta_archea 100.0 2E-47 4.4E-52 298.8 24.9 186 7-196 1-186 (188)
10 PTZ00488 Proteasome subunit be 100.0 4.9E-47 1.1E-51 307.3 25.0 190 3-196 36-225 (247)
11 cd03763 proteasome_beta_type_7 100.0 9.9E-47 2.1E-51 295.2 25.0 187 7-198 1-187 (189)
12 cd01912 proteasome_beta protea 100.0 1.5E-46 3.3E-51 293.9 25.3 188 7-197 1-188 (189)
13 TIGR03690 20S_bact_beta protea 100.0 9.9E-46 2.2E-50 295.6 25.3 192 5-196 1-201 (219)
14 KOG0180|consensus 100.0 8.2E-47 1.8E-51 279.3 17.3 201 2-204 4-204 (204)
15 cd03750 proteasome_alpha_type_ 100.0 1.9E-45 4.1E-50 295.5 22.4 189 3-196 24-216 (227)
16 cd03765 proteasome_beta_bacter 100.0 6.3E-45 1.4E-49 292.2 23.8 186 7-196 1-204 (236)
17 TIGR03633 arc_protsome_A prote 100.0 8.5E-45 1.8E-49 291.3 23.7 194 3-201 26-222 (224)
18 cd03752 proteasome_alpha_type_ 100.0 6E-45 1.3E-49 290.1 22.0 185 3-189 26-213 (213)
19 cd03755 proteasome_alpha_type_ 100.0 1.9E-44 4.2E-49 286.0 22.4 181 3-189 24-207 (207)
20 PTZ00246 proteasome subunit al 100.0 3.2E-44 7E-49 292.7 22.6 189 3-193 28-219 (253)
21 PRK03996 proteasome subunit al 100.0 5E-44 1.1E-48 289.7 23.2 193 3-200 33-228 (241)
22 PF00227 Proteasome: Proteasom 100.0 9.2E-44 2E-48 278.1 23.5 183 4-189 2-190 (190)
23 cd03749 proteasome_alpha_type_ 100.0 7.9E-44 1.7E-48 283.2 22.1 182 3-190 24-211 (211)
24 cd03754 proteasome_alpha_type_ 100.0 1.2E-43 2.5E-48 282.9 22.1 182 4-189 27-215 (215)
25 cd03751 proteasome_alpha_type_ 100.0 8.4E-44 1.8E-48 283.0 21.2 183 3-189 27-212 (212)
26 KOG0179|consensus 100.0 9.4E-44 2E-48 270.5 20.2 199 3-204 26-235 (235)
27 cd01911 proteasome_alpha prote 100.0 1.3E-43 2.8E-48 281.6 21.9 183 3-189 24-209 (209)
28 cd03756 proteasome_alpha_arche 100.0 3.6E-43 7.9E-48 279.4 22.6 183 3-190 25-210 (211)
29 cd01906 proteasome_protease_Hs 100.0 9.7E-43 2.1E-47 270.6 23.0 181 7-189 1-182 (182)
30 KOG0176|consensus 100.0 1.1E-43 2.5E-48 268.0 16.6 186 3-193 31-224 (241)
31 cd03753 proteasome_alpha_type_ 100.0 3.1E-42 6.7E-47 274.5 22.4 182 3-189 24-213 (213)
32 KOG0177|consensus 100.0 6.8E-42 1.5E-46 256.8 17.7 192 6-199 1-193 (200)
33 TIGR03691 20S_bact_alpha prote 100.0 5.4E-41 1.2E-45 269.0 22.7 181 4-193 25-211 (228)
34 KOG0174|consensus 100.0 2.2E-40 4.7E-45 249.5 17.5 195 3-201 16-210 (224)
35 KOG0175|consensus 100.0 1E-38 2.2E-43 249.7 17.5 193 1-197 66-258 (285)
36 KOG0178|consensus 100.0 3.1E-38 6.7E-43 240.7 16.5 191 4-196 29-223 (249)
37 KOG0173|consensus 100.0 3.6E-38 7.7E-43 246.1 16.9 190 2-196 33-222 (271)
38 KOG0185|consensus 100.0 5.9E-38 1.3E-42 242.6 16.0 193 4-198 39-236 (256)
39 KOG0183|consensus 100.0 1.8E-37 3.8E-42 237.1 13.8 185 3-193 27-216 (249)
40 KOG0181|consensus 100.0 4.9E-37 1.1E-41 231.5 13.2 190 3-197 29-221 (233)
41 PRK05456 ATP-dependent proteas 100.0 3.6E-35 7.7E-40 225.3 19.9 168 6-188 1-171 (172)
42 KOG0184|consensus 100.0 1.1E-35 2.3E-40 228.4 15.7 189 3-195 31-224 (254)
43 cd01913 protease_HslV Protease 100.0 4.8E-34 1E-38 217.7 19.8 165 7-188 1-170 (171)
44 TIGR03692 ATP_dep_HslV ATP-dep 100.0 3E-33 6.5E-38 213.3 19.7 167 7-188 1-170 (171)
45 KOG0863|consensus 100.0 7.3E-34 1.6E-38 219.4 15.4 185 3-193 29-219 (264)
46 KOG0182|consensus 100.0 7.1E-32 1.5E-36 206.0 18.6 194 4-201 34-232 (246)
47 cd01901 Ntn_hydrolase The Ntn 100.0 2.7E-30 5.8E-35 195.5 20.8 162 7-171 1-163 (164)
48 COG5405 HslV ATP-dependent pro 99.7 3.8E-17 8.2E-22 120.6 11.9 173 3-190 1-176 (178)
49 COG3484 Predicted proteasome-t 99.6 1.2E-13 2.6E-18 105.8 13.3 189 6-197 1-206 (255)
50 PF09894 DUF2121: Uncharacteri 97.6 0.0087 1.9E-07 46.3 14.7 155 6-192 1-180 (194)
51 COG4079 Uncharacterized protei 96.6 0.21 4.5E-06 40.2 14.7 156 6-192 1-181 (293)
52 PRK09732 hypothetical protein; 85.8 3.7 7.9E-05 30.3 6.3 40 155-198 5-44 (134)
53 KOG3361|consensus 84.3 1.2 2.5E-05 32.6 2.9 44 121-165 71-114 (157)
54 COG3193 GlcG Uncharacterized p 78.5 11 0.00024 28.0 6.4 39 154-196 5-43 (141)
55 PF03928 DUF336: Domain of unk 72.9 6.3 0.00014 28.6 4.0 39 155-197 1-39 (132)
56 COG1754 Uncharacterized C-term 55.4 17 0.00036 30.3 3.6 56 108-167 77-134 (298)
57 PRK02487 hypothetical protein; 53.5 48 0.001 25.0 5.7 38 153-195 19-56 (163)
58 COG3140 Uncharacterized protei 49.1 24 0.00052 21.7 2.7 35 143-177 14-48 (60)
59 PF08269 Cache_2: Cache domain 46.8 36 0.00077 22.8 3.8 42 155-202 33-74 (95)
60 COG4245 TerY Uncharacterized p 43.2 49 0.0011 26.0 4.3 40 161-200 22-61 (207)
61 PF10632 He_PIG_assoc: He_PIG 42.9 31 0.00068 18.2 2.2 22 105-128 5-26 (29)
62 PF07499 RuvA_C: RuvA, C-termi 40.6 13 0.00029 21.8 0.7 32 137-168 12-44 (47)
63 PF04539 Sigma70_r3: Sigma-70 37.8 56 0.0012 20.9 3.5 29 63-91 4-32 (78)
64 COG4537 ComGC Competence prote 35.7 84 0.0018 22.0 4.1 27 59-85 50-77 (107)
65 cd04513 Glycosylasparaginase G 35.6 1.3E+02 0.0027 24.9 5.8 57 136-195 188-248 (263)
66 PF03701 UPF0181: Uncharacteri 29.6 93 0.002 18.8 3.1 34 143-176 14-47 (51)
67 cd04702 ASRGL1_like ASRGL1_lik 29.1 1.7E+02 0.0036 24.2 5.5 54 135-194 179-236 (261)
68 cd04512 Ntn_Asparaginase_2_lik 27.5 1.9E+02 0.0041 23.7 5.5 55 135-195 176-234 (248)
69 PF13983 YsaB: YsaB-like lipop 26.8 1.8E+02 0.004 18.8 4.8 57 73-130 9-72 (77)
70 PF04485 NblA: Phycobilisome d 25.6 1.2E+02 0.0026 18.5 3.1 23 155-177 20-42 (53)
71 PF01458 UPF0051: Uncharacteri 25.1 1.8E+02 0.004 23.0 5.2 48 117-170 182-229 (229)
72 PF04312 DUF460: Protein of un 24.9 2.9E+02 0.0063 20.5 6.0 23 107-130 33-55 (138)
73 PRK14065 exodeoxyribonuclease 24.7 1.8E+02 0.004 19.6 4.1 32 142-173 31-62 (86)
74 PRK02260 S-ribosylhomocysteina 24.5 1.9E+02 0.0042 21.9 4.8 60 117-177 71-151 (158)
75 PF02609 Exonuc_VII_S: Exonucl 21.7 1.8E+02 0.0039 17.3 3.5 31 145-175 8-38 (53)
76 KOG3652|consensus 21.6 1.9E+02 0.0042 27.3 5.0 109 50-174 191-305 (1215)
77 KOG0083|consensus 21.5 1E+02 0.0022 22.9 2.7 146 3-175 6-164 (192)
78 PF00538 Linker_histone: linke 21.3 1.5E+02 0.0033 19.1 3.3 39 139-177 21-59 (77)
79 PF01592 NifU_N: NifU-like N t 21.2 2.1E+02 0.0046 20.4 4.4 54 121-175 42-96 (126)
80 PF14804 Jag_N: Jag N-terminus 20.9 1.1E+02 0.0023 18.5 2.3 28 157-191 5-32 (52)
81 PF14593 PH_3: PH domain; PDB: 20.9 56 0.0012 22.9 1.2 15 116-130 36-50 (104)
82 PRK05114 hypothetical protein; 20.5 1.6E+02 0.0036 18.3 3.0 34 143-176 14-47 (59)
No 1
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.4e-52 Score=332.34 Aligned_cols=199 Identities=24% Similarity=0.373 Sum_probs=191.6
Q ss_pred CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP 82 (204)
Q Consensus 3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 82 (204)
.++|+|+|||+++||||||+|+|.+.+.++..++.+|||+|++|++++++|..+|++.+.+.++.+++.|+.++++++++
T Consensus 5 ~~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~i~~ 84 (212)
T cd03757 5 TDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKEMST 84 (212)
T ss_pred cCCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCCCCCH
Confidence 35799999999999999999999999988888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCC--------
Q psy1779 83 DTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQ-------- 154 (204)
Q Consensus 83 ~~la~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~-------- 154 (204)
+.+++++++++|++|. +||++++|+||||+ +++|+||++||+|++. +++++|+|+|+++++++||+.|+
T Consensus 85 ~~la~~ls~~ly~~R~-~P~~~~~iiaG~D~-~~~p~Ly~~D~~G~~~-~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~ 161 (212)
T cd03757 85 EAIAQLLSTILYSRRF-FPYYVFNILAGIDE-EGKGVVYSYDPVGSYE-RETYSAGGSASSLIQPLLDNQVGRKNQNNVE 161 (212)
T ss_pred HHHHHHHHHHHHhhcC-CCeEEEEEEEEEcC-CCCEEEEEEcCccCee-ecCEEEEeecHHHHHHHHHHHHHhhccCcCC
Confidence 9999999999999876 89999999999997 6789999999999999 79999999999999999999875
Q ss_pred -CCCCHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEEeccCCC
Q psy1779 155 -PGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204 (204)
Q Consensus 155 -~~ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~~~~~~ 204 (204)
++||++||++++.+||+.+.+||+.++++++|++|+++|++++.+++|+|
T Consensus 162 ~~~ms~eea~~l~~~~l~~~~~rd~~sg~~i~i~iit~~g~~~~~~~~~~~ 212 (212)
T cd03757 162 RTPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKDGIEEETFPLRKD 212 (212)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCcccCCCEEEEEEcCCCEEEEeeccCCC
Confidence 89999999999999999999999999999999999999999999999998
No 2
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.4e-51 Score=322.68 Aligned_cols=193 Identities=39% Similarity=0.747 Sum_probs=184.6
Q ss_pred CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHH
Q psy1779 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPD 83 (204)
Q Consensus 4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 83 (204)
++|+|+|||+++||||||+|+|.+.+.....++.+|||+|++|++++++|..+|++.+.++++.+++.|+++++++++++
T Consensus 1 ~~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~ 80 (195)
T cd03759 1 YNGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPK 80 (195)
T ss_pred CCCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 46999999999999999999999988777777899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecc-eEEEccchhhHHHhhhccCCCCCCHHHH
Q psy1779 84 TFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTD-FVAGGSAQNMIMGIGESFWQPGLSPEQL 162 (204)
Q Consensus 84 ~la~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~-~~a~G~g~~~~~~~Le~~~~~~ms~~ea 162 (204)
.+++++++++|++|. +||+|++||||||+ +++|+||++||+|++. .++ ++|+|+|++.++++||+.|+++||.+||
T Consensus 81 ~la~~l~~~ly~~r~-~P~~v~~ii~G~D~-~~~p~Ly~~D~~G~~~-~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea 157 (195)
T cd03759 81 TFSSLISSLLYEKRF-GPYFVEPVVAGLDP-DGKPFICTMDLIGCPS-IPSDFVVSGTASEQLYGMCESLWRPDMEPDEL 157 (195)
T ss_pred HHHHHHHHHHHHhcC-CCceEEEEEEEEcC-CCCEEEEEEcCCCccc-ccCCEEEEcccHHHHHHHHHhccCCCCCHHHH
Confidence 999999999999886 89999999999997 6789999999999987 466 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEEe
Q psy1779 163 FEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKI 199 (204)
Q Consensus 163 ~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~ 199 (204)
++++.+||+.+.+||..++++++|++|+++|+++++|
T Consensus 158 ~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~~~~ 194 (195)
T cd03759 158 FETISQALLSAVDRDALSGWGAVVYIITKDKVTTRTL 194 (195)
T ss_pred HHHHHHHHHHHHhhCcccCCceEEEEEcCCcEEEEec
Confidence 9999999999999999999999999999999999886
No 3
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.8e-50 Score=314.35 Aligned_cols=191 Identities=20% Similarity=0.306 Sum_probs=181.6
Q ss_pred ceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Q psy1779 7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFA 86 (204)
Q Consensus 7 ~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 86 (204)
+|+|||+++||||||+|+|.+.+.++..++.+|||+|++|++++++|..+|++.|.++++.+++.|+.+++++++++.++
T Consensus 2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 81 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAA 81 (193)
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 79999999999999999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc-ccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHHHHH
Q psy1779 87 AIASWELYAR-KLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEV 165 (204)
Q Consensus 87 ~~l~~~l~~~-r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~~ 165 (204)
+++++++|.+ |..|||++++|+||||+ +++|+||++||+|++. +++++|+|+|+++++++||+.|+++||+|||+++
T Consensus 82 ~~l~~~~~~~~~~~rP~~~~~li~G~d~-~~~p~Ly~~d~~G~~~-~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l 159 (193)
T cd03758 82 NFTRRELAESLRSRTPYQVNLLLAGYDK-VEGPSLYYIDYLGTLV-KVPYAAHGYGAYFCLSILDRYYKPDMTVEEALEL 159 (193)
T ss_pred HHHHHHHHHHhhcCCCeEEEEEEEEEcC-CCCcEEEEECCCcceE-ECCeeEEeecHHHHHHHHHhccCCCCCHHHHHHH
Confidence 9999999654 33269999999999997 6899999999999999 6999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccCCCEEEEEEcCCceEEEEe
Q psy1779 166 CSQVVIQACERDTKSGWGATVYVVEPDKVTIRKI 199 (204)
Q Consensus 166 ~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~ 199 (204)
+.+|++.+.+||+.++++++|++|+++|++++++
T Consensus 160 ~~~a~~~~~~rd~~~~~~i~i~ii~~~g~~~~~~ 193 (193)
T cd03758 160 MKKCIKELKKRFIINLPNFTVKVVDKDGIRDLEL 193 (193)
T ss_pred HHHHHHHHHHhccccCCceEEEEEcCCCeEeCCC
Confidence 9999999999999999999999999999987653
No 4
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.8e-49 Score=309.32 Aligned_cols=187 Identities=22% Similarity=0.240 Sum_probs=180.7
Q ss_pred ceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Q psy1779 7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFA 86 (204)
Q Consensus 7 ~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 86 (204)
+|+|||+++||||||+|+|.+++.++.+++.+|||+|++|++++++|..+|++.|.++++.+++.|+.+++++|+++.++
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la 80 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAAS 80 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999998888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHHHHHH
Q psy1779 87 AIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVC 166 (204)
Q Consensus 87 ~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~~~ 166 (204)
+++++++|.+|. .||++++|+||||+ ++|+||++||+|++. +++++|+|+|+++++++||+.|+++||.+||++++
T Consensus 81 ~~ls~~l~~~~~-~~~~v~~li~G~D~--~g~~L~~~dp~G~~~-~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~ 156 (188)
T cd03761 81 KLLSNMLYQYKG-MGLSMGTMICGWDK--TGPGLYYVDSDGTRL-KGDLFSVGSGSTYAYGVLDSGYRYDLSVEEAYDLA 156 (188)
T ss_pred HHHHHHHHhcCC-CCeEEEEEEEEEeC--CCCEEEEEcCCceEE-EcCeEEEcccHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 999999999876 79999999999995 789999999999999 79999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccCCCEEEEEEcCCceEEE
Q psy1779 167 SQVVIQACERDTKSGWGATVYVVEPDKVTIR 197 (204)
Q Consensus 167 ~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~ 197 (204)
.+||+.+.+||..++++++|++|+++|+++.
T Consensus 157 ~~~l~~~~~rd~~sg~~~~v~ii~~~g~~~~ 187 (188)
T cd03761 157 RRAIYHATHRDAYSGGNVNLYHVREDGWRKI 187 (188)
T ss_pred HHHHHHHHHhcccCCCCeEEEEEcCCceEEc
Confidence 9999999999999999999999999999753
No 5
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.6e-49 Score=311.66 Aligned_cols=191 Identities=20% Similarity=0.276 Sum_probs=181.1
Q ss_pred CCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHH-hhHHhcCCCCCHH
Q psy1779 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTA-NYVASEQSPISPD 83 (204)
Q Consensus 5 ~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~~~~~~~~~~ 83 (204)
.|+|+|||+++||||||+|+|.+++.++..++.+|||+|++|++++++|..+|++.+.+++|.+++ .++.+++++++++
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 80 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK 80 (197)
T ss_pred CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 489999999999999999999998899988999999999999999999999999999999999986 5667889999999
Q ss_pred HHHHHHHHHHHhccc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCC--CCCHH
Q psy1779 84 TFAAIASWELYARKL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQP--GLSPE 160 (204)
Q Consensus 84 ~la~~l~~~l~~~r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~--~ms~~ 160 (204)
.+++++++++|++|. .|||+|++|+||||+ +++|+||++||+|++. +++++|+|+|+++++++||+.|++ +||+|
T Consensus 81 ~la~~i~~~~y~~~~~~rP~~v~~iiaG~D~-~~gp~Ly~~D~~G~~~-~~~~~a~G~g~~~~~~~Le~~~~~~~~ms~e 158 (197)
T cd03760 81 EIHSYLTRVLYNRRSKMNPLWNTLVVGGVDN-EGEPFLGYVDLLGTAY-EDPHVATGFGAYLALPLLREAWEKKPDLTEE 158 (197)
T ss_pred HHHHHHHHHHHHHhhcCCCceEEEEEEEEcC-CCCEEEEEEcCCccEE-ECCEeEEccHHHHHHHHHHhhcCCCCCCCHH
Confidence 999999999999864 389999999999996 6899999999999999 699999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEE
Q psy1779 161 QLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIR 197 (204)
Q Consensus 161 ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~ 197 (204)
||++++.+||+.+.+||..++++++|++|+++|++.+
T Consensus 159 ea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~~ 195 (197)
T cd03760 159 EARALIEECMKVLYYRDARSINKYQIAVVTKEGVEIE 195 (197)
T ss_pred HHHHHHHHHHHHHHHhccccCCceEEEEECCCCEEeC
Confidence 9999999999999999999999999999999998754
No 6
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=3.6e-48 Score=302.31 Aligned_cols=185 Identities=23% Similarity=0.340 Sum_probs=179.3
Q ss_pred CceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHH
Q psy1779 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTF 85 (204)
Q Consensus 6 g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 85 (204)
|+|+|||+++||||||+|+|.+.+.++..++.+|||+|++|++++++|..+|++.+.++++.+++.|+.+++++++++.+
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKAL 80 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 78999999999999999999998999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHHHHH
Q psy1779 86 AAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEV 165 (204)
Q Consensus 86 a~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~~ 165 (204)
++++++++|.++. |||+|++|+||+|+ ++|+||++||+|++. +++++++|+++++++++||+.|+++||++||+++
T Consensus 81 a~~l~~~~~~~~~-rP~~v~~ivaG~d~--~g~~Ly~~d~~G~~~-~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l 156 (185)
T TIGR03634 81 ATLLSNILNSNRF-FPFIVQLLVGGVDE--EGPHLYSLDPAGGII-EDDYTATGSGSPVAYGVLEDEYREDMSVEEAKKL 156 (185)
T ss_pred HHHHHHHHHhcCC-CCeEEEEEEEEEeC--CCCEEEEECCCCCeE-ECCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 9999999998866 99999999999996 679999999999999 6999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccCCCEEEEEEcCCce
Q psy1779 166 CSQVVIQACERDTKSGWGATVYVVEPDKV 194 (204)
Q Consensus 166 ~~~~l~~~~~~d~~~~~~~~v~~i~~~g~ 194 (204)
+.+||+.+.+||..++++++|++|+++|+
T Consensus 157 ~~~~l~~~~~r~~~~~~~~~v~ii~~~g~ 185 (185)
T TIGR03634 157 AVRAIKSAIERDVASGNGIDVAVITKDGV 185 (185)
T ss_pred HHHHHHHHHHhcccCCCCEEEEEEcCCCC
Confidence 99999999999999999999999999985
No 7
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-48 Score=312.43 Aligned_cols=190 Identities=23% Similarity=0.280 Sum_probs=180.3
Q ss_pred CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHH
Q psy1779 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPD 83 (204)
Q Consensus 4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 83 (204)
..|+|+|||+++||||||+|+|.+++.++..++.+|||+|+|||+|++||+.+|++.|.++++.+++.|++.++++|+++
T Consensus 28 ~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~aDa~~lv~~~r~~a~~~~~~~~~~i~v~ 107 (236)
T COG0638 28 RGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAADAQVLVRYARAEAQLYRLRYGEPISVE 107 (236)
T ss_pred cCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 34699999999999999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHH
Q psy1779 84 TFAAIASWELYARKL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQL 162 (204)
Q Consensus 84 ~la~~l~~~l~~~r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea 162 (204)
.+++++++++|.++. .|||+|++|+||+|+ ++|+||++||+|++. +++++|+|+|++.++++||+.|+++|++|||
T Consensus 108 ~la~~ls~~l~~~~~~~rP~gv~~iiaG~d~--~~p~Ly~~Dp~G~~~-~~~~~a~Gsgs~~a~~~Le~~y~~~m~~eea 184 (236)
T COG0638 108 ALAKLLSNILQEYTQSGRPYGVSLLVAGVDD--GGPRLYSTDPSGSYN-EYKATAIGSGSQFAYGFLEKEYREDLSLEEA 184 (236)
T ss_pred HHHHHHHHHHHHhccCcccceEEEEEEEEcC--CCCeEEEECCCCcee-ecCEEEEcCCcHHHHHHHHhhccCCCCHHHH
Confidence 999999999988743 389999999999996 899999999999999 7999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCEEEEEEcC-CceEE
Q psy1779 163 FEVCSQVVIQACERDTKSGWGATVYVVEP-DKVTI 196 (204)
Q Consensus 163 ~~~~~~~l~~~~~~d~~~~~~~~v~~i~~-~g~~~ 196 (204)
++++.+||..+.+||..++++++|++|++ +|.++
T Consensus 185 i~la~~al~~a~~rd~~s~~~~~v~vi~~~~~~~~ 219 (236)
T COG0638 185 IELAVKALRAAIERDAASGGGIEVAVITKDEGFRK 219 (236)
T ss_pred HHHHHHHHHHHHhccccCCCCeEEEEEEcCCCeEE
Confidence 99999999999999998999999999999 55554
No 8
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.5e-48 Score=300.96 Aligned_cols=187 Identities=20% Similarity=0.276 Sum_probs=180.0
Q ss_pred ceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Q psy1779 7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFA 86 (204)
Q Consensus 7 ~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 86 (204)
+|+|||+++||||||+|+|.+.|.++..++.+|||+|++|++++++|..+|++.|.+.++.+++.|+.+++++++++.++
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a 80 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA 80 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHH
Confidence 68999999999999999999999888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHHHHHH
Q psy1779 87 AIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVC 166 (204)
Q Consensus 87 ~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~~~ 166 (204)
+++++++|++| +||++++||||+|+ +++|+||.+||+|++. +++++++|+|+++++++||+.|+++||++||++++
T Consensus 81 ~~l~~~~~~~~--~~~~~~~ii~G~d~-~~gp~ly~~d~~G~~~-~~~~~~~G~g~~~~~~~Le~~~~~~~s~~ea~~l~ 156 (188)
T cd03762 81 SLFKNLCYNYK--EMLSAGIIVAGWDE-QNGGQVYSIPLGGMLI-RQPFAIGGSGSTYIYGYVDANYKPGMTLEECIKFV 156 (188)
T ss_pred HHHHHHHHhcc--ccceeeEEEEEEcC-CCCcEEEEECCCCCEE-ecCEEEEcccHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 99999999886 79999999999997 6789999999999999 68999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccCCCEEEEEEcCCceEEE
Q psy1779 167 SQVVIQACERDTKSGWGATVYVVEPDKVTIR 197 (204)
Q Consensus 167 ~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~ 197 (204)
++||+.+.+||+.++++++|++|+++|++++
T Consensus 157 ~~al~~~~~rd~~~~~~~~i~~i~~~g~~~~ 187 (188)
T cd03762 157 KNALSLAMSRDGSSGGVIRLVIITKDGVERK 187 (188)
T ss_pred HHHHHHHHHhccccCCCEEEEEECCCCEEEe
Confidence 9999999999999999999999999999754
No 9
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2e-47 Score=298.83 Aligned_cols=186 Identities=21% Similarity=0.293 Sum_probs=179.7
Q ss_pred ceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Q psy1779 7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFA 86 (204)
Q Consensus 7 ~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 86 (204)
+|+|||+++||||||+|+|.+.|.++..++.+||++|++|++++++|..+|++.|.+.++.+++.|+.+++++++++.++
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALA 80 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHHHHHH
Q psy1779 87 AIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVC 166 (204)
Q Consensus 87 ~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~~~ 166 (204)
+++++++|.++. |||+|++|+||+|+ ++|+||.+||+|++. +++++|+|+|+++++++||+.|+++||++||++++
T Consensus 81 ~~i~~~~~~~~~-~P~~~~~lvaG~d~--~~~~ly~~D~~G~~~-~~~~~a~G~g~~~~~~~L~~~~~~~~~~~ea~~l~ 156 (188)
T cd03764 81 TLLSNILNSSKY-FPYIVQLLIGGVDE--EGPHLYSLDPLGSII-EDKYTATGSGSPYAYGVLEDEYKEDMTVEEAKKLA 156 (188)
T ss_pred HHHHHHHHhcCC-CCcEEEEEEEEEeC--CCCEEEEECCCCCEE-EcCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 999999999876 99999999999995 789999999999999 69999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccCCCEEEEEEcCCceEE
Q psy1779 167 SQVVIQACERDTKSGWGATVYVVEPDKVTI 196 (204)
Q Consensus 167 ~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~ 196 (204)
.+||+.+.+||+.++++++|++|+++|++.
T Consensus 157 ~~~l~~~~~rd~~~~~~i~i~iv~~~g~~~ 186 (188)
T cd03764 157 IRAIKSAIERDSASGDGIDVVVITKDGYKE 186 (188)
T ss_pred HHHHHHHHhhcCCCCCcEEEEEECCCCeEe
Confidence 999999999999999999999999999664
No 10
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=4.9e-47 Score=307.28 Aligned_cols=190 Identities=19% Similarity=0.213 Sum_probs=180.8
Q ss_pred CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP 82 (204)
Q Consensus 3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 82 (204)
..+|+|+|||+++||||||+|+|.+.+.++..++.+|||+|++|++++++|..+|++.|.++++.+++.|+++++++|++
T Consensus 36 ~~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~~isv 115 (247)
T PTZ00488 36 FAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGELISV 115 (247)
T ss_pred cCCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHH
Q psy1779 83 DTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQL 162 (204)
Q Consensus 83 ~~la~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea 162 (204)
+.+++++++++|.+|. .|+.+++|+||||+ .+|+||++||+|++. +++++|+|+|+.+++++||+.|+++||.+||
T Consensus 116 ~~la~~ls~~l~~~R~-~~~~v~~iiaG~D~--~gp~Ly~vDp~Gs~~-~~~~~a~G~gs~~~~~~Le~~~k~dms~eEa 191 (247)
T PTZ00488 116 AAASKILANIVWNYKG-MGLSMGTMICGWDK--KGPGLFYVDNDGTRL-HGNMFSCGSGSTYAYGVLDAGFKWDLNDEEA 191 (247)
T ss_pred HHHHHHHHHHHHhcCC-CCeeEEEEEEEEeC--CCCEEEEEcCCccee-ecCCEEEccCHHHHHHHHHhcCcCCCCHHHH
Confidence 9999999999998865 56777789999996 679999999999999 6999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCEEEEEEcCCceEE
Q psy1779 163 FEVCSQVVIQACERDTKSGWGATVYVVEPDKVTI 196 (204)
Q Consensus 163 ~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~ 196 (204)
++++.+||+.+.+||..++++++|++|+++|++.
T Consensus 192 i~l~~kal~~~~~Rd~~sg~~~ei~iI~k~g~~~ 225 (247)
T PTZ00488 192 QDLGRRAIYHATFRDAYSGGAINLYHMQKDGWKK 225 (247)
T ss_pred HHHHHHHHHHHHHhccccCCCeEEEEEcCCccEE
Confidence 9999999999999999999999999999999654
No 11
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.9e-47 Score=295.19 Aligned_cols=187 Identities=18% Similarity=0.213 Sum_probs=179.2
Q ss_pred ceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Q psy1779 7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFA 86 (204)
Q Consensus 7 ~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 86 (204)
+|+|||+|+||||||+|+|.++|.++..++.+|||+|++|++++++|..+|++.|.+.++.+++.|+++++++++++.++
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTAL 80 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999999888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHHHHHH
Q psy1779 87 AIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVC 166 (204)
Q Consensus 87 ~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~~~ 166 (204)
+++++++|.++ .||+|++|+||||+ ++|+||.+||+|++. +++++|+|++++.++++||+.|+++||++||++++
T Consensus 81 ~~l~~~l~~~~--~p~~v~~ivaG~d~--~g~~ly~~d~~G~~~-~~~~~a~G~~~~~~~~~L~~~~~~~ls~~ea~~l~ 155 (189)
T cd03763 81 TMLKQHLFRYQ--GHIGAALVLGGVDY--TGPHLYSIYPHGSTD-KLPFVTMGSGSLAAMSVLEDRYKPDMTEEEAKKLV 155 (189)
T ss_pred HHHHHHHHHcC--CccceeEEEEeEcC--CCCEEEEECCCCCEE-ecCEEEEcCCHHHHHHHHHhhcCCCCCHHHHHHHH
Confidence 99999998765 59999999999996 679999999999999 79999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccCCCEEEEEEcCCceEEEE
Q psy1779 167 SQVVIQACERDTKSGWGATVYVVEPDKVTIRK 198 (204)
Q Consensus 167 ~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~ 198 (204)
.+||+.+.+||+.++++++|++|+++|+++.+
T Consensus 156 ~~~l~~~~~rd~~~~~~~~v~ii~~~g~~~~~ 187 (189)
T cd03763 156 CEAIEAGIFNDLGSGSNVDLCVITKDGVEYLR 187 (189)
T ss_pred HHHHHHHHHhcCcCCCceEEEEEcCCcEEEec
Confidence 99999999999999999999999999998643
No 12
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.5e-46 Score=293.95 Aligned_cols=188 Identities=25% Similarity=0.343 Sum_probs=181.3
Q ss_pred ceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Q psy1779 7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFA 86 (204)
Q Consensus 7 ~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 86 (204)
+|+||++++||||||+|+|.+.+......+.+|||+|+++++++++|+.+|++.+.++++.+++.|+..++++++++.++
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAA 80 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999999888789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHHHHHH
Q psy1779 87 AIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVC 166 (204)
Q Consensus 87 ~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~~~ 166 (204)
+++++++|+++. +||++++||||+|+ +++|+||.+||+|++. +++++++|+++++++++||+.|+++||++||++++
T Consensus 81 ~~l~~~~~~~~~-~P~~~~~iv~G~d~-~~~~~l~~id~~G~~~-~~~~~a~G~~~~~~~~~Le~~~~~~~s~~ea~~~~ 157 (189)
T cd01912 81 NLLSNILYSYRG-FPYYVSLIVGGVDK-GGGPFLYYVDPLGSLI-EAPFVATGSGSKYAYGILDRGYKPDMTLEEAVELV 157 (189)
T ss_pred HHHHHHHHhcCC-CCeEEEEEEEEEcC-CCCeEEEEECCCCCeE-ecCEEEEcccHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 999999999876 89999999999997 6899999999999999 69999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccCCCEEEEEEcCCceEEE
Q psy1779 167 SQVVIQACERDTKSGWGATVYVVEPDKVTIR 197 (204)
Q Consensus 167 ~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~ 197 (204)
.+||+.+.+||+.++++++|++|+++|++.+
T Consensus 158 ~~~l~~~~~~d~~~~~~~~v~vi~~~g~~~~ 188 (189)
T cd01912 158 KKAIDSAIERDLSSGGGVDVAVITKDGVEEL 188 (189)
T ss_pred HHHHHHHHHhcCccCCcEEEEEECCCCEEEc
Confidence 9999999999999999999999999998754
No 13
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=9.9e-46 Score=295.57 Aligned_cols=192 Identities=19% Similarity=0.249 Sum_probs=176.5
Q ss_pred CCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHH
Q psy1779 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDT 84 (204)
Q Consensus 5 ~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 84 (204)
+|+|+|||+++||||||+|+|.+.|.++..++.+|||+|++|++++++|..+|++.|.++++.+++.|+.+++++++++.
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~ 80 (219)
T TIGR03690 1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDG 80 (219)
T ss_pred CCcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcc--cCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHH
Q psy1779 85 FAAIASWELYARK--LTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQL 162 (204)
Q Consensus 85 la~~l~~~l~~~r--~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea 162 (204)
++++|++++|... ..|||++++||||||+.+++|+||++||+|+.+.+++++|+|+|+++++++||+.|+++||.+||
T Consensus 81 la~~ls~~~~~~~~~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~~~~ms~eea 160 (219)
T TIGR03690 81 KANRLAAMVRGNLPAAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYSPDLDEDDA 160 (219)
T ss_pred HHHHHHHHHHhhhhhccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcCCCCcCHHHH
Confidence 9999999997652 23999999999999962368999999999963436789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCC-------EEEEEEcCCceEE
Q psy1779 163 FEVCSQVVIQACERDTKSGWG-------ATVYVVEPDKVTI 196 (204)
Q Consensus 163 ~~~~~~~l~~~~~~d~~~~~~-------~~v~~i~~~g~~~ 196 (204)
++++.+||..+.+||..+++. ++|++|+++|++.
T Consensus 161 i~l~~~al~~~~~~d~~s~~~~~~~~~~~ei~ii~~~g~~~ 201 (219)
T TIGR03690 161 LRVAVEALYDAADDDSATGGPDLVRGIYPTVVVITADGARR 201 (219)
T ss_pred HHHHHHHHHHHHhcccccCCcccccccccEEEEEccCceEE
Confidence 999999999999999866664 3999999999764
No 14
>KOG0180|consensus
Probab=100.00 E-value=8.2e-47 Score=279.33 Aligned_cols=201 Identities=37% Similarity=0.683 Sum_probs=196.3
Q ss_pred CCCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCC
Q psy1779 2 SLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPIS 81 (204)
Q Consensus 2 ~~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 81 (204)
.+++|++++|+++|+||.||+|.|.......++.+++|||+++|++++|.+|+..|++.+.++++...+.|+++++++|.
T Consensus 4 ~synGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R~i~ 83 (204)
T KOG0180|consen 4 MSYNGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREEREIK 83 (204)
T ss_pred eeecCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhcccC
Confidence 46899999999999999999999999888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHH
Q psy1779 82 PDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQ 161 (204)
Q Consensus 82 ~~~la~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~e 161 (204)
|+.+++++|.++|++|+ .||.+..+|||+|+ +++|+|..+|..|+.....+|++.|.+++..++.+|..|+|+|..|+
T Consensus 84 P~~~s~mvS~~lYekRf-gpYf~~PvVAGl~~-~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~pnmepd~ 161 (204)
T KOG0180|consen 84 PETFSSMVSSLLYEKRF-GPYFTEPVVAGLDD-DNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALYEPNMEPDE 161 (204)
T ss_pred cHHHHHHHHHHHHHhhc-CCcccceeEeccCC-CCCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhcCCCCCHHH
Confidence 99999999999999999 99999999999999 99999999999999887789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEEeccCCC
Q psy1779 162 LFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204 (204)
Q Consensus 162 a~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~~~~~~ 204 (204)
.++.+.++|.++.+||+.|||+..|.+|+||.++++.+|+|||
T Consensus 162 LFetisQa~Lna~DRDalSGwGa~vyiI~kdkv~~r~lK~RmD 204 (204)
T KOG0180|consen 162 LFETISQALLNAVDRDALSGWGAVVYIITKDKVTKRTLKGRMD 204 (204)
T ss_pred HHHHHHHHHHhHhhhhhhccCCeEEEEEccchhhhhhhhhcCC
Confidence 9999999999999999999999999999999999999999998
No 15
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.9e-45 Score=295.55 Aligned_cols=189 Identities=15% Similarity=0.176 Sum_probs=175.6
Q ss_pred CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP 82 (204)
Q Consensus 3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 82 (204)
.++|+|+|||+++||||||+|+|.+ +.++..++.+||++|++|++++++|..+|++.+.+.++.+++.|+.++++++++
T Consensus 24 v~~G~t~igik~~dgVvlaad~~~~-~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v 102 (227)
T cd03750 24 VSSGAPSVGIKAANGVVLATEKKVP-SPLIDESSVHKVEQITPHIGMVYSGMGPDFRVLVKKARKIAQQYYLVYGEPIPV 102 (227)
T ss_pred HHcCCCEEEEEeCCEEEEEEeecCC-ccccCCCCcceEEEEcCCEEEEEeEcHHhHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 3689999999999999999999998 567777889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--hccc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCH
Q psy1779 83 DTFAAIASWELY--ARKL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSP 159 (204)
Q Consensus 83 ~~la~~l~~~l~--~~r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~ 159 (204)
+.++++++++++ .++. .|||+|++|+||||+ .+|+||++||+|++. +++++|+|+|++.++++||+.|+++||+
T Consensus 103 ~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~--~g~~Ly~~d~~G~~~-~~~~~a~G~g~~~~~~~Le~~~~~~ms~ 179 (227)
T cd03750 103 SQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDE--GGPYLYQVDPSGSYF-TWKATAIGKNYSNAKTFLEKRYNEDLEL 179 (227)
T ss_pred HHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeC--CCCEEEEECCCCCEE-eeeEEEECCCCHHHHHHHHhhccCCCCH
Confidence 999999999984 4443 389999999999996 589999999999999 6999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCEEEEEEcCC-ceEE
Q psy1779 160 EQLFEVCSQVVIQACERDTKSGWGATVYVVEPD-KVTI 196 (204)
Q Consensus 160 ~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~-g~~~ 196 (204)
+||++++++||..+.+|+ .++.+++|.+|+++ |.+.
T Consensus 180 eeai~l~~~~l~~~~~~~-l~~~~iev~iv~~~~~~~~ 216 (227)
T cd03750 180 EDAIHTAILTLKEGFEGQ-MTEKNIEIGICGETKGFRL 216 (227)
T ss_pred HHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCCCEEE
Confidence 999999999999999987 58899999999986 5653
No 16
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.3e-45 Score=292.21 Aligned_cols=186 Identities=13% Similarity=0.021 Sum_probs=170.0
Q ss_pred ceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEee----CcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCC-CCC
Q psy1779 7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMS----PHLYLINPGLCADGMQFAEKMTLRTANYVASEQS-PIS 81 (204)
Q Consensus 7 ~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~-~~~ 81 (204)
|.+|||+++||||||+|+|.+.+.... ++.+|||+|+ +|++|+.||..+|++.|.+++|.+++.|++++++ +++
T Consensus 1 ~~~vGIk~kdGVVLaadkr~~~~l~~~-~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 79 (236)
T cd03765 1 TYCLGIKLDAGLVFASDSRTNAGVDNI-STYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPT 79 (236)
T ss_pred CeEEEEEeCCeEEEEEccCccCCCccc-cccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCC
Confidence 468999999999999999987764443 4789999998 8999999999999999999999999999999999 899
Q ss_pred HHHHHHHHHHHHHhc----cc-----CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeec----ceEEEccchhhHHHh
Q psy1779 82 PDTFAAIASWELYAR----KL-----TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKT----DFVAGGSAQNMIMGI 148 (204)
Q Consensus 82 ~~~la~~l~~~l~~~----r~-----~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~----~~~a~G~g~~~~~~~ 148 (204)
++.+|+++++++++. .. .|||+|++|+||||+ +.+|+||++||+|++. ++ +|+|+|. +++++++
T Consensus 80 v~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~-~~Gp~LY~idpsG~~~-e~~a~~~~~AiG~-~~~a~~~ 156 (236)
T cd03765 80 MFDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIK-GEEPRLFLIYPQGNFI-EATPDTPFLQIGE-TKYGKPI 156 (236)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEEC-CCCCEEEEECCCCCEE-eecCCCceeeeCC-chhhHHH
Confidence 999999999986541 21 289999999999996 6789999999999999 57 5789996 6999999
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEE
Q psy1779 149 GESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTI 196 (204)
Q Consensus 149 Le~~~~~~ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~ 196 (204)
||+.|+++||++||++++.+||..+++||..++.+++|++|+++|++.
T Consensus 157 Lek~yk~~ms~eeai~la~~al~~a~~rd~~sg~~iev~vI~k~G~~~ 204 (236)
T cd03765 157 LDRVITPDTSLEDAAKCALVSMDSTMRSNLSVGPPLDLLVYERDSLQV 204 (236)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEECCCeee
Confidence 999999999999999999999999999999999999999999999876
No 17
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=8.5e-45 Score=291.26 Aligned_cols=194 Identities=18% Similarity=0.216 Sum_probs=179.7
Q ss_pred CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP 82 (204)
Q Consensus 3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 82 (204)
.++|+|+|||+++||||||+|+|.+ +.+...++.+||++|++|+++++||..+|++.+.+.++.+++.|++++++++++
T Consensus 26 v~~G~tvigi~~~dgvvlaad~r~~-~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 104 (224)
T TIGR03633 26 VKRGTTAVGIKTKDGVVLAVDKRIT-SKLVEPSSIEKIFKIDDHIGAATSGLVADARVLIDRARIEAQINRLTYGEPIDV 104 (224)
T ss_pred HHcCCCEEEEEECCEEEEEEeccCC-ccccCCCccceEEEECCCEEEEEeecHHhHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 3689999999999999999999997 567767889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh--ccc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCH
Q psy1779 83 DTFAAIASWELYA--RKL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSP 159 (204)
Q Consensus 83 ~~la~~l~~~l~~--~r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~ 159 (204)
+.++++++++++. ++. .|||+|++||||+|+ ++|+||.+||.|++. +++++|+|+++.+++++||+.|+++|++
T Consensus 105 ~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~--~~~~Ly~~D~~G~~~-~~~~~a~G~g~~~~~~~L~~~~~~~~~~ 181 (224)
T TIGR03633 105 ETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDD--GGPRLFETDPSGALL-EYKATAIGAGRQAVTEFLEKEYREDLSL 181 (224)
T ss_pred HHHHHHHHHHHHHhcCCCCccccceEEEEEEEeC--CcCEEEEECCCCCee-cceEEEECCCCHHHHHHHHHhccCCCCH
Confidence 9999999999754 332 389999999999995 789999999999999 6999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEEecc
Q psy1779 160 EQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIAT 201 (204)
Q Consensus 160 ~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~~~ 201 (204)
+||++++.+||..+.+ |..++++++|++|+++|..++.++.
T Consensus 182 eeai~l~~~al~~~~~-d~~~~~~i~i~ii~~~g~~~~~~~~ 222 (224)
T TIGR03633 182 DEAIELALKALYSAVE-DKLTPENVEVAYITVEDKKFRKLSV 222 (224)
T ss_pred HHHHHHHHHHHHHHhc-ccCCCCcEEEEEEEcCCCcEEECCC
Confidence 9999999999999988 8899999999999999977776654
No 18
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6e-45 Score=290.06 Aligned_cols=185 Identities=12% Similarity=0.142 Sum_probs=172.7
Q ss_pred CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP 82 (204)
Q Consensus 3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 82 (204)
.++|+|+|||+++||||||+|+|.+.+..+.+++.+|||+|++|+++++||..+|++.+.++++.+++.|++++++++++
T Consensus 26 ~~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~v 105 (213)
T cd03752 26 ISHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSDANILINYARLIAQRYLYSYQEPIPV 105 (213)
T ss_pred HhcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHhHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 36899999999999999999999998877767789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--Hhcc-cCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCH
Q psy1779 83 DTFAAIASWEL--YARK-LTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSP 159 (204)
Q Consensus 83 ~~la~~l~~~l--~~~r-~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~ 159 (204)
+.+++.++.++ |++. ..|||+|++|++|||+ +.+|+||.+||+|++. +++++|+|+++.+++++||+.|+++||+
T Consensus 106 ~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~-~~g~~ly~~d~~G~~~-~~~~~a~G~gs~~~~~~Le~~y~~~ms~ 183 (213)
T cd03752 106 EQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDK-HYGFQLYQSDPSGNYS-GWKATAIGNNNQAAQSLLKQDYKDDMTL 183 (213)
T ss_pred HHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeC-CCCCEEEEECCCCCee-eeeEEEECCCcHHHHHHHHHhccCCCCH
Confidence 99999999886 4331 2289999999999996 6789999999999999 6999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCEEEEEE
Q psy1779 160 EQLFEVCSQVVIQACERDTKSGWGATVYVV 189 (204)
Q Consensus 160 ~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i 189 (204)
+||++++.+||..+.+||..++.+++|.+|
T Consensus 184 eea~~l~~~al~~~~~r~~~~~~~~ei~~~ 213 (213)
T cd03752 184 EEALALAVKVLSKTMDSTKLTSEKLEFATL 213 (213)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCcEEEEEC
Confidence 999999999999999999999999999875
No 19
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.9e-44 Score=285.97 Aligned_cols=181 Identities=18% Similarity=0.283 Sum_probs=167.8
Q ss_pred CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP 82 (204)
Q Consensus 3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 82 (204)
.++|+|+|||+++||||||+|++.+. .++..+..+||++|++|++++++|+.+|++.+.++++.+++.|+++++++|++
T Consensus 24 v~~G~t~Igik~~dgVvlaad~~~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~ 102 (207)
T cd03755 24 VRKGTTAVGVRGKDCVVLGVEKKSVA-KLQDPRTVRKICMLDDHVCLAFAGLTADARVLINRARLECQSHRLTVEDPVTV 102 (207)
T ss_pred HHcCCCEEEEEeCCEEEEEEecCCCC-cccCCCccCcEEEECCCEEEEEecchhhHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 46899999999999999999998765 45556678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--HhcccC-CCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCH
Q psy1779 83 DTFAAIASWEL--YARKLT-SPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSP 159 (204)
Q Consensus 83 ~~la~~l~~~l--~~~r~~-~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~ 159 (204)
+.+++++++++ |+++.. |||+|++|+||||+ +++|+||++||+|++. +++++|+|+|++.++++||+.|+++||+
T Consensus 103 ~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~-~~~p~Ly~iD~~G~~~-~~~~~a~G~gs~~~~~~Le~~~~~~ms~ 180 (207)
T cd03755 103 EYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDP-DGTPRLYQTDPSGTYS-AWKANAIGRNSKTVREFLEKNYKEEMTR 180 (207)
T ss_pred HHHHHHHHHHHHHHhcccCcccceeEEEEEEEeC-CCCeEEEEECCCcCEE-cceEEEECCCCHHHHHHHHhhccCCCCH
Confidence 99999999998 555533 89999999999997 6799999999999999 6999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCEEEEEE
Q psy1779 160 EQLFEVCSQVVIQACERDTKSGWGATVYVV 189 (204)
Q Consensus 160 ~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i 189 (204)
+||++++.+||..+.+ .++.++||+++
T Consensus 181 eeai~l~~~~l~~~~~---~~~~~~e~~~~ 207 (207)
T cd03755 181 DDTIKLAIKALLEVVQ---SGSKNIELAVM 207 (207)
T ss_pred HHHHHHHHHHHHHHhC---CCCCeEEEEEC
Confidence 9999999999999987 67889999875
No 20
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=3.2e-44 Score=292.66 Aligned_cols=189 Identities=15% Similarity=0.173 Sum_probs=176.8
Q ss_pred CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP 82 (204)
Q Consensus 3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 82 (204)
.++|+|+|||+++||||||+|+|.+++.++..++.+|||+|++|++++++|..+|++.+.+.+|.+++.|+..+++++++
T Consensus 28 v~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v 107 (253)
T PTZ00246 28 INNASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTADANILINQCRLYAQRYRYTYGEPQPV 107 (253)
T ss_pred HHhCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 36799999999999999999999999877777778999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh--ccc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCH
Q psy1779 83 DTFAAIASWELYA--RKL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSP 159 (204)
Q Consensus 83 ~~la~~l~~~l~~--~r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~ 159 (204)
+.+++.++..++. ++. .|||+|++|+||||+ +++|+||++||+|++. +++++|+|+++++++++||+.|+++||+
T Consensus 108 ~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~-~~gp~Ly~~D~~Gs~~-~~~~~a~G~gs~~~~~~Le~~~~~~ms~ 185 (253)
T PTZ00246 108 EQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDE-NLGYQLYHTDPSGNYS-GWKATAIGQNNQTAQSILKQEWKEDLTL 185 (253)
T ss_pred HHHHHHHHHHHHHhccccCcccCCEEEEEEEEeC-CCCcEEEEECCCCCEe-cceEEEECCCcHHHHHHHHHhccCCCCH
Confidence 9999999988654 322 289999999999997 6789999999999999 6999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCc
Q psy1779 160 EQLFEVCSQVVIQACERDTKSGWGATVYVVEPDK 193 (204)
Q Consensus 160 ~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g 193 (204)
+||++++.+||+.+.++|..++++++|++|+++|
T Consensus 186 eeai~l~~~al~~~~~~d~~s~~~vev~ii~~~~ 219 (253)
T PTZ00246 186 EQGLLLAAKVLTKSMDSTSPKADKIEVGILSHGE 219 (253)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCC
Confidence 9999999999999999999999999999999986
No 21
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=5e-44 Score=289.69 Aligned_cols=193 Identities=18% Similarity=0.213 Sum_probs=177.8
Q ss_pred CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP 82 (204)
Q Consensus 3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 82 (204)
.++|+|+|||+++||||||+|+|.+ +.+...++.+||++|++|++++++|..+|++.+.++++.+++.|+.++++++++
T Consensus 33 v~~G~t~igik~~dgVvlaad~r~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 111 (241)
T PRK03996 33 VKRGTTAVGVKTKDGVVLAVDKRIT-SPLIEPSSIEKIFKIDDHIGAASAGLVADARVLIDRARVEAQINRLTYGEPIGV 111 (241)
T ss_pred HHhCCCEEEEEeCCEEEEEEeccCC-CcccCCCccceEEEEcCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 4689999999999999999999998 566667789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc--cc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCH
Q psy1779 83 DTFAAIASWELYAR--KL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSP 159 (204)
Q Consensus 83 ~~la~~l~~~l~~~--r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~ 159 (204)
+.++++++++++.. +. .|||++++||||||. ++|+||.+||+|++. +++++|+|++++.++++||+.|+++|++
T Consensus 112 ~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~--~gp~Ly~id~~G~~~-~~~~~a~G~g~~~~~~~Le~~~~~~~s~ 188 (241)
T PRK03996 112 ETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDD--GGPRLFETDPSGAYL-EYKATAIGAGRDTVMEFLEKNYKEDLSL 188 (241)
T ss_pred HHHHHHHHHHHHHhcCCCCccchheEEEEEEEeC--CcCEEEEECCCCCee-cceEEEECCCcHHHHHHHHHhcccCCCH
Confidence 99999999998543 32 389999999999995 689999999999999 6999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEEec
Q psy1779 160 EQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIA 200 (204)
Q Consensus 160 ~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~~ 200 (204)
+||++++.+||..+.++ ..++++++|++|+++|..++.++
T Consensus 189 eeai~l~~~al~~~~~~-~~~~~~i~i~ii~~~~~~~~~~~ 228 (241)
T PRK03996 189 EEAIELALKALAKANEG-KLDPENVEIAYIDVETKKFRKLS 228 (241)
T ss_pred HHHHHHHHHHHHHHhcc-CCCCCcEEEEEEECCCCcEEECC
Confidence 99999999999999886 46889999999999987666654
No 22
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=9.2e-44 Score=278.10 Aligned_cols=183 Identities=25% Similarity=0.357 Sum_probs=169.7
Q ss_pred CCCceEEEEEeCCEEEEEEecccccCceeeecC-CCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEY-ENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP 82 (204)
Q Consensus 4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~-~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 82 (204)
++|+|+|||+++|||+||+|+|.+.|..+..++ .+|||+|++|++++++|..+|++.+.++++.+++.|++.+++++++
T Consensus 2 ~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~ 81 (190)
T PF00227_consen 2 NNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPISP 81 (190)
T ss_dssp HTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCH
T ss_pred CCCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCccccc
Confidence 589999999999999999999999988886666 6999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH----HhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeec-ceEEEccchhhHHHhhhccCCCCC
Q psy1779 83 DTFAAIASWEL----YARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKT-DFVAGGSAQNMIMGIGESFWQPGL 157 (204)
Q Consensus 83 ~~la~~l~~~l----~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~-~~~a~G~g~~~~~~~Le~~~~~~m 157 (204)
+.+++.+++.+ +..+. ||+++++|+||+|+ +++|+||.+||+|++. ++ +++|+|+|++.++++||+.|+++|
T Consensus 82 ~~l~~~~~~~~~~~~~~~~~-~p~~~~~li~G~d~-~~~~~l~~vd~~G~~~-~~~~~~aiG~g~~~~~~~l~~~~~~~~ 158 (190)
T PF00227_consen 82 EYLAKAIASLIQNYTYRSGR-RPYGVSLLIAGYDE-DGGPQLYSVDPSGSYI-ECKRFAAIGSGSQFAQPILEKLYKPDL 158 (190)
T ss_dssp HHHHHHHHHHHHHHHHHTTT-STTSEEEEEEEEET-TTEEEEEEEETTSEEE-EBSSEEEESTTHHHHHHHHHHHHTTTS
T ss_pred hhhhhhhHHHHhhhcccccc-cCccccceeeeecc-ccccceeeeccccccc-cccccccchhcchhhhHHHHhhccCCC
Confidence 96666666654 33333 89999999999997 7789999999999999 68 699999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhccccCCCEEEEEE
Q psy1779 158 SPEQLFEVCSQVVIQACERDTKSGWGATVYVV 189 (204)
Q Consensus 158 s~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i 189 (204)
|++||++++.+||+.+.++|..++++++|++|
T Consensus 159 ~~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi 190 (190)
T PF00227_consen 159 SLEEAIELALKALKEAIDRDILSGDNIEVAVI 190 (190)
T ss_dssp SHHHHHHHHHHHHHHHHHHBTTSTSEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhhCCccCCeEEEEEC
Confidence 99999999999999999999999999999987
No 23
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.9e-44 Score=283.16 Aligned_cols=182 Identities=16% Similarity=0.179 Sum_probs=168.1
Q ss_pred CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP 82 (204)
Q Consensus 3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 82 (204)
.++|+|+|||+++||||||+|+|.+.+ ...+.+|||+|++|+++++||+.+|++.+.++++.+++.|++++++++++
T Consensus 24 v~~G~t~IgIk~~dgVvlaad~r~~~~---l~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v 100 (211)
T cd03749 24 VKQGSATVGLKSKTHAVLVALKRATSE---LSSYQKKIFKVDDHIGIAIAGLTADARVLSRYMRQECLNYRFVYDSPIPV 100 (211)
T ss_pred HhcCCCEEEEEeCCEEEEEEeccCccc---cCCccccEEEeCCCEEEEEEeChHhHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 367999999999999999999997764 34567999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh--ccc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCC--CCC
Q psy1779 83 DTFAAIASWELYA--RKL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQ--PGL 157 (204)
Q Consensus 83 ~~la~~l~~~l~~--~r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~--~~m 157 (204)
+.+++.++.+++. ++. .|||+|++|++|||+ .+|+||++||+|++. +++++|+|++++.++++||+.|+ ++|
T Consensus 101 ~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~--~gp~Ly~~Dp~G~~~-~~~~~a~G~g~~~a~~~Le~~~~~~~~m 177 (211)
T cd03749 101 SRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDE--SGPHLFQTCPSGNYF-EYKATSIGARSQSARTYLERHFEEFEDC 177 (211)
T ss_pred HHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcC--CCCeEEEECCCcCEe-eeeEEEECCCcHHHHHHHHHhhccccCC
Confidence 9999999998765 332 389999999999996 589999999999999 69999999999999999999998 699
Q ss_pred CHHHHHHHHHHHHHHHHhhcc-ccCCCEEEEEEc
Q psy1779 158 SPEQLFEVCSQVVIQACERDT-KSGWGATVYVVE 190 (204)
Q Consensus 158 s~~ea~~~~~~~l~~~~~~d~-~~~~~~~v~~i~ 190 (204)
|++||+++++++|+.++++|. .++.++||++|+
T Consensus 178 s~ee~i~~~~~~l~~~~~~~~~~~~~~iei~ii~ 211 (211)
T cd03749 178 SLEELIKHALRALRETLPGEQELTIKNVSIAIVG 211 (211)
T ss_pred CHHHHHHHHHHHHHHHhccCCCCCCCcEEEEEEC
Confidence 999999999999999999887 889999999984
No 24
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.2e-43 Score=282.91 Aligned_cols=182 Identities=18% Similarity=0.162 Sum_probs=167.3
Q ss_pred CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHH
Q psy1779 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPD 83 (204)
Q Consensus 4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 83 (204)
+.|+|+|||+++||||||+|+|.+.+ ++..+..+|||+|++|+++++||+.+|++.+.+++|.+++.|+++++++++++
T Consensus 27 ~~g~t~igi~~~d~Vvlaad~r~~~~-~i~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~v~ 105 (215)
T cd03754 27 NAGLTSVAVRGKDCAVVVTQKKVPDK-LIDPSTVTHLFRITDEIGCVMTGMIADSRSQVQRARYEAAEFKYKYGYEMPVD 105 (215)
T ss_pred cCCccEEEEEeCCEEEEEEecccccc-ccCCcccCceEEEcCCEEEEEEechhhHHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 45889999999999999999999765 44455789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH--HHhccc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCC--C-
Q psy1779 84 TFAAIASWE--LYARKL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPG--L- 157 (204)
Q Consensus 84 ~la~~l~~~--l~~~r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~--m- 157 (204)
.+|++++++ +|+++. .|||++++|+||+|+ +++|+||++||+|++. +++++|+|+|++.++++||+.|+++ |
T Consensus 106 ~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~-~~gp~Ly~~Dp~Gs~~-~~~~~a~G~gs~~~~~~Le~~~~~~~~~~ 183 (215)
T cd03754 106 VLAKRIADINQVYTQHAYMRPLGVSMILIGIDE-ELGPQLYKCDPAGYFA-GYKATAAGVKEQEATNFLEKKLKKKPDLI 183 (215)
T ss_pred HHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeC-CCCeEEEEEcCCccEE-eEEEEEECCCcHHHHHHHHHHhccccccC
Confidence 999999997 566654 389999999999997 6799999999999999 6999999999999999999999984 7
Q ss_pred -CHHHHHHHHHHHHHHHHhhccccCCCEEEEEE
Q psy1779 158 -SPEQLFEVCSQVVIQACERDTKSGWGATVYVV 189 (204)
Q Consensus 158 -s~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i 189 (204)
|++||++++++||..+.+||. ++.+++|++|
T Consensus 184 ~s~eeai~l~~~al~~~~~rd~-~~~~~ei~~~ 215 (215)
T cd03754 184 ESYEETVELAISCLQTVLSTDF-KATEIEVGVV 215 (215)
T ss_pred CCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEC
Confidence 999999999999999999995 5899999875
No 25
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.4e-44 Score=283.02 Aligned_cols=183 Identities=14% Similarity=0.185 Sum_probs=168.4
Q ss_pred CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP 82 (204)
Q Consensus 3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 82 (204)
.++|+|+|||+++||||||+|+|.+. .+...++.+|||+|++|++++++|..+|++.+.++++.+++.|+.++++++++
T Consensus 27 ~~~G~tvIgik~kdgVvla~d~r~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~~~v 105 (212)
T cd03751 27 VENSGTAIGIRCKDGVVLAVEKLVTS-KLYEPGSNKRIFNVDRHIGIAVAGLLADGRHLVSRAREEAENYRDNYGTPIPV 105 (212)
T ss_pred HhcCCCEEEEEeCCEEEEEEEccccc-cccCcchhcceeEecCcEEEEEEEChHhHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 46899999999999999999999975 55556788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc--c-cCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCH
Q psy1779 83 DTFAAIASWELYAR--K-LTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSP 159 (204)
Q Consensus 83 ~~la~~l~~~l~~~--r-~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~ 159 (204)
+.++++|+++++.. + ..|||+|++|+||||+ ++|+||++||+|++. +++++|+|+|++.++++||+.|+++||+
T Consensus 106 ~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~--~gp~Ly~~D~~Gs~~-~~~~~a~G~g~~~a~~~Lek~~~~dms~ 182 (212)
T cd03751 106 KVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDS--DGPQLYMIEPSGVSY-GYFGCAIGKGKQAAKTELEKLKFSELTC 182 (212)
T ss_pred HHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeC--CcCEEEEECCCCCEE-eeEEEEECCCCHHHHHHHHHhccCCCCH
Confidence 99999999987553 2 2389999999999995 689999999999999 6999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCEEEEEE
Q psy1779 160 EQLFEVCSQVVIQACERDTKSGWGATVYVV 189 (204)
Q Consensus 160 ~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i 189 (204)
+||++++.++|..+.+.+-....++||.++
T Consensus 183 eeai~l~~~~L~~~~~~~~~~~~~iei~~~ 212 (212)
T cd03751 183 REAVKEAAKIIYIVHDEIKDKAFELELSWV 212 (212)
T ss_pred HHHHHHHHHHHHHHhhccCCCCccEEEEEC
Confidence 999999999999999866577789998874
No 26
>KOG0179|consensus
Probab=100.00 E-value=9.4e-44 Score=270.53 Aligned_cols=199 Identities=23% Similarity=0.352 Sum_probs=191.1
Q ss_pred CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP 82 (204)
Q Consensus 3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 82 (204)
.++|+|++||++.|+.|+|+|+|.+.|..+.+++..|||+++|+++++.+|+.+|+..|...++.+.+.|+.++++.|+.
T Consensus 26 ~~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~~~h~k~ms~ 105 (235)
T KOG0179|consen 26 EDNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQYEHDHNKKMSI 105 (235)
T ss_pred ccCCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHHHHhhcccccccH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccC---------
Q psy1779 83 DTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFW--------- 153 (204)
Q Consensus 83 ~~la~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~--------- 153 (204)
+.+|++||.+||.+|+ .||++..++||+|+ ++++.+|++||-|++. +..+.|.|+++..++++|+...
T Consensus 106 ~s~A~lls~~LY~kRF-FPYYv~~ilaGiDe-eGKG~VySyDPvGsye-r~~~~AgGsa~~mI~PfLDnQi~~kn~~~e~ 182 (235)
T KOG0179|consen 106 HSAAQLLSTILYSKRF-FPYYVFNILAGIDE-EGKGAVYSYDPVGSYE-RVTCRAGGSAASMIQPFLDNQIGHKNQNLEN 182 (235)
T ss_pred HHHHHHHHHHHhhccc-ccceeeeeeecccc-cCceeEEeecCCccee-eeeeecCCcchhhhhhhhhhhccCcCccccc
Confidence 9999999999999999 99999999999998 8999999999999999 6899999999999999999753
Q ss_pred --CCCCCHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEEeccCCC
Q psy1779 154 --QPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204 (204)
Q Consensus 154 --~~~ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~~~~~~ 204 (204)
++.+|+|+|+.++..+|..|.+||+.+|++++|+|++|+|++.+++|+|.|
T Consensus 183 ~~~~~Ls~e~ai~lv~d~F~SAaERdI~tGD~l~i~I~tk~gV~~e~~~LrkD 235 (235)
T KOG0179|consen 183 AERTPLSLERAIRLVKDAFTSAAERDIYTGDKLEICIITKDGVEVETLPLRKD 235 (235)
T ss_pred CcccccCHHHHHHHHHHHhhhhhhcccccCCcEEEEEEecCCEEEEeeeccCC
Confidence 246899999999999999999999999999999999999999999999987
No 27
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=1.3e-43 Score=281.63 Aligned_cols=183 Identities=17% Similarity=0.219 Sum_probs=170.9
Q ss_pred CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP 82 (204)
Q Consensus 3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 82 (204)
.++|+|+||++++|||+||+|++.+.+ +...++.+|||+|+++++++++|..+|++.+.+.++.+++.|+.++++++++
T Consensus 24 ~~~G~tvigi~~~dgVvlaaD~~~~~~-~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~g~~~~~ 102 (209)
T cd01911 24 VKNGSTAVGIKGKDGVVLAVEKKVTSK-LLDPSSVEKIFKIDDHIGCAVAGLTADARVLVNRARVEAQNYRYTYGEPIPV 102 (209)
T ss_pred HHcCCCEEEEEECCEEEEEEEecCCcc-ccCCcccceEEEecCCeEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 468999999999999999999999865 5556889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--hccc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCH
Q psy1779 83 DTFAAIASWELY--ARKL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSP 159 (204)
Q Consensus 83 ~~la~~l~~~l~--~~r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~ 159 (204)
+.++++++++++ .++. .|||++++||||+|+ +++|+||.+||.|++. +++++++|+++..++++||+.|+++||+
T Consensus 103 ~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~-~~~~~Ly~iD~~G~~~-~~~~~a~G~g~~~~~~~L~~~~~~~ms~ 180 (209)
T cd01911 103 EVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDE-EGGPQLYQTDPSGTYF-GYKATAIGKGSQEAKTFLEKRYKKDLTL 180 (209)
T ss_pred HHHHHHHHHHHHHHhcccCccChhheEEEEEEcC-CCCcEEEEECCCCCee-eeeEEEeCCCcHHHHHHHHHhcccCCCH
Confidence 999999999884 4443 289999999999997 6799999999999999 6999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCEEEEEE
Q psy1779 160 EQLFEVCSQVVIQACERDTKSGWGATVYVV 189 (204)
Q Consensus 160 ~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i 189 (204)
+||++++.+||..+.+||. ++.+++|+++
T Consensus 181 ~ea~~l~~~~l~~~~~~d~-~~~~~~i~i~ 209 (209)
T cd01911 181 EEAIKLALKALKEVLEEDK-KAKNIEIAVV 209 (209)
T ss_pred HHHHHHHHHHHHHHHhccC-CCCcEEEEEC
Confidence 9999999999999999998 9999999875
No 28
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.6e-43 Score=279.44 Aligned_cols=183 Identities=17% Similarity=0.182 Sum_probs=170.3
Q ss_pred CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP 82 (204)
Q Consensus 3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 82 (204)
.++|+|+|||+++||||||+|++.+ +.+...++.+||++|++|+++++||..+|++.+.+.++.+++.|+.++++++++
T Consensus 25 v~~G~t~igik~~dgvvla~d~~~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~ 103 (211)
T cd03756 25 VKRGTTALGIKCKEGVVLAVDKRIT-SKLVEPESIEKIYKIDDHVGAATSGLVADARVLIDRARVEAQIHRLTYGEPIDV 103 (211)
T ss_pred HHcCCCEEEEEECCEEEEEEeccCC-CcccCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 3679999999999999999999997 556667889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc--cc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCH
Q psy1779 83 DTFAAIASWELYAR--KL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSP 159 (204)
Q Consensus 83 ~~la~~l~~~l~~~--r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~ 159 (204)
+.++++++.+++.. +. .|||++++|+||||+ .+|+||++||+|++. +++++|+|++++.++++||+.|+++|++
T Consensus 104 ~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~--~~~~ly~vd~~G~~~-~~~~~a~G~g~~~~~~~Le~~~~~~m~~ 180 (211)
T cd03756 104 EVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDD--GGPRLFETDPSGAYN-EYKATAIGSGRQAVTEFLEKEYKEDMSL 180 (211)
T ss_pred HHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeC--CCCEEEEECCCCCee-eeEEEEECCCCHHHHHHHHhhccCCCCH
Confidence 99999999987543 22 289999999999996 689999999999999 6999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCEEEEEEc
Q psy1779 160 EQLFEVCSQVVIQACERDTKSGWGATVYVVE 190 (204)
Q Consensus 160 ~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~ 190 (204)
+||++++.+||..+.+++. ++.+++|++|+
T Consensus 181 ~ea~~l~~~~l~~~~~~~~-~~~~~~v~ii~ 210 (211)
T cd03756 181 EEAIELALKALYAALEENE-TPENVEIAYVT 210 (211)
T ss_pred HHHHHHHHHHHHHHhcccC-CCCcEEEEEEe
Confidence 9999999999999998875 89999999986
No 29
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=9.7e-43 Score=270.57 Aligned_cols=181 Identities=24% Similarity=0.346 Sum_probs=172.7
Q ss_pred ceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Q psy1779 7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFA 86 (204)
Q Consensus 7 ~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 86 (204)
+|+|||+++||||||+|+|.+.+.....++.+|||+|+++++++++|..+|++.+.+.++.++..|+.+++++++++.++
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALA 80 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999998877788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHHHHH
Q psy1779 87 AIASWELYARKL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEV 165 (204)
Q Consensus 87 ~~l~~~l~~~r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~~ 165 (204)
+++++++|.++. .|||++++|+||+|+ +++|+||.+||+|++. +++++|+|+++++++++||+.|+++||++||+++
T Consensus 81 ~~l~~~~~~~~~~~~p~~~~~lv~G~d~-~~~~~Ly~id~~G~~~-~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l 158 (182)
T cd01906 81 KLLANLLYEYTQSLRPLGVSLLVAGVDE-EGGPQLYSVDPSGSYI-EYKATAIGSGSQYALGILEKLYKPDMTLEEAIEL 158 (182)
T ss_pred HHHHHHHHHhCCCccChheEEEEEEEeC-CCCcEEEEECCCCCEe-eccEEEECCCcHHHHHHHHHHccCCCCHHHHHHH
Confidence 999999988753 489999999999996 6899999999999999 6999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccCCCEEEEEE
Q psy1779 166 CSQVVIQACERDTKSGWGATVYVV 189 (204)
Q Consensus 166 ~~~~l~~~~~~d~~~~~~~~v~~i 189 (204)
+.+||+.+.++|..++++++|.+|
T Consensus 159 ~~~~l~~~~~~~~~~~~~~~i~ii 182 (182)
T cd01906 159 ALKALKSALERDLYSGGNIEVAVI 182 (182)
T ss_pred HHHHHHHHHcccCCCCCCEEEEEC
Confidence 999999999999989999999875
No 30
>KOG0176|consensus
Probab=100.00 E-value=1.1e-43 Score=267.96 Aligned_cols=186 Identities=18% Similarity=0.192 Sum_probs=172.8
Q ss_pred CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP 82 (204)
Q Consensus 3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 82 (204)
-+.|+|.|||+.++|||||+++|+++ .+..+.++.||++|++||+|++||+.+|++.++++.|.++++|.+.|++++++
T Consensus 31 ikLGsTaIGv~TkEgVvL~vEKritS-pLm~p~sveKi~eid~HIgca~SGl~aDarTlve~arv~~qnh~f~Y~e~i~V 109 (241)
T KOG0176|consen 31 IKLGSTAIGVKTKEGVVLAVEKRITS-PLMEPSSVEKIVEIDDHIGCAMSGLIADARTLVERARVETQNHWFTYGEPISV 109 (241)
T ss_pred HhcCCceeeeeccceEEEEEeccccC-cccCchhhhhheehhhceeeeccccccchHHHHHHHHHHhhhceeecCCcccH
Confidence 36799999999999999999999986 56678899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc-------cc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCC
Q psy1779 83 DTFAAIASWELYAR-------KL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQ 154 (204)
Q Consensus 83 ~~la~~l~~~l~~~-------r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~ 154 (204)
+.+.+.++++.-.. +. .|||||++|+||+|. .+|+||+.||+|+++ .+++-|||+|++.+.+.|++.|.
T Consensus 110 Es~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~--~gpqL~h~dPSGtf~-~~~AKAIGSgsEga~~~L~~e~~ 186 (241)
T KOG0176|consen 110 ESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDE--TGPQLYHLDPSGTFI-RYKAKAIGSGSEGAESSLQEEYH 186 (241)
T ss_pred HHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccC--CCceEEEeCCCCceE-EecceeccccchHHHHHHHHHHh
Confidence 99999999985321 22 299999999999995 899999999999999 69999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCc
Q psy1779 155 PGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDK 193 (204)
Q Consensus 155 ~~ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g 193 (204)
++|+++||+.+++..|+.+++.. .+.+|+++.+|+++|
T Consensus 187 ~~ltL~ea~~~~L~iLkqVMeeK-l~~~Nvev~~vt~e~ 224 (241)
T KOG0176|consen 187 KDLTLKEAEKIVLKILKQVMEEK-LNSNNVEVAVVTPEG 224 (241)
T ss_pred hcccHHHHHHHHHHHHHHHHHHh-cCccceEEEEEcccC
Confidence 99999999999999999999976 567899999999974
No 31
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.1e-42 Score=274.47 Aligned_cols=182 Identities=15% Similarity=0.155 Sum_probs=168.3
Q ss_pred CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP 82 (204)
Q Consensus 3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 82 (204)
.++|+|+|||+++||||||+|+|.+. .+...++.+||++|++|++++++|..+|++.+.+.++.+++.|+.++++++++
T Consensus 24 ~~~G~t~igik~~dgVvlaad~r~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~ 102 (213)
T cd03753 24 IKLGSTAIGIKTKEGVVLAVEKRITS-PLMEPSSVEKIMEIDDHIGCAMSGLIADARTLIDHARVEAQNHRFTYNEPMTV 102 (213)
T ss_pred HhcCCCEEEEEeCCEEEEEEecccCC-cCcCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 46899999999999999999999985 45666788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc--cc------CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCC
Q psy1779 83 DTFAAIASWELYAR--KL------TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQ 154 (204)
Q Consensus 83 ~~la~~l~~~l~~~--r~------~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~ 154 (204)
+.++++++.++|.. +. .|||+|++|+||||+ ++|+||.+||+|++. +++++|+|++++.++++||+.|+
T Consensus 103 ~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~--~gp~Ly~vd~~G~~~-~~~~~a~G~~~~~~~~~L~~~~~ 179 (213)
T cd03753 103 ESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDE--NGPQLFHTDPSGTFT-RCDAKAIGSGSEGAQSSLQEKYH 179 (213)
T ss_pred HHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcC--CCCEEEEECCCCCee-cccEEEECCCcHHHHHHHHhhcc
Confidence 99999999998653 11 289999999999995 789999999999999 69999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhccccCCCEEEEEE
Q psy1779 155 PGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVV 189 (204)
Q Consensus 155 ~~ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i 189 (204)
++||++||++++++||+.+.+++ .++.+++|++|
T Consensus 180 ~~ls~eeai~l~~~~l~~~~~~~-~~~~~~ei~~~ 213 (213)
T cd03753 180 KDMTLEEAEKLALSILKQVMEEK-LNSTNVELATV 213 (213)
T ss_pred CCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEC
Confidence 99999999999999999988766 77889999975
No 32
>KOG0177|consensus
Probab=100.00 E-value=6.8e-42 Score=256.76 Aligned_cols=192 Identities=18% Similarity=0.301 Sum_probs=184.4
Q ss_pred CceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHH
Q psy1779 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTF 85 (204)
Q Consensus 6 g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 85 (204)
|.+++||++.|+|++|+|+....+.++..++.+|++.+++|+.++++|..+|+.++.+++.+.++.|++++|.++||..+
T Consensus 1 Me~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~a 80 (200)
T KOG0177|consen 1 METLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAA 80 (200)
T ss_pred CceEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc-ccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHHHH
Q psy1779 86 AAIASWELYAR-KLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFE 164 (204)
Q Consensus 86 a~~l~~~l~~~-r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~ 164 (204)
|++.++.+.+. |+++||.|++|+||+|+ +.+|.||++|..|+.. +.+|++.|.++.++.++|++.|+|+||.+||+.
T Consensus 81 ahFtR~~La~~LRsr~~yqV~~LvaGYd~-~~gp~L~~iDyla~~~-~vpy~~hGy~~~f~~sIlDr~Y~pdmt~eea~~ 158 (200)
T KOG0177|consen 81 AHFTRRELAESLRSRTPYQVNILVAGYDP-EEGPELYYIDYLATLV-SVPYAAHGYGSYFCLSILDRYYKPDMTIEEALD 158 (200)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEeccCC-CCCCceeeehhhhhcc-cCCcccccchhhhhHHHHHhhhCCCCCHHHHHH
Confidence 99999999887 76689999999999999 7779999999999999 799999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCCEEEEEEcCCceEEEEe
Q psy1779 165 VCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKI 199 (204)
Q Consensus 165 ~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~ 199 (204)
+..+|+.++.+|-..+-.+|.|.+|+|||++....
T Consensus 159 lmkKCv~El~kRlvin~~~f~v~IVdkdGir~~~~ 193 (200)
T KOG0177|consen 159 LMKKCVLELKKRLVINLPGFIVKIVDKDGIRKLDD 193 (200)
T ss_pred HHHHHHHHHHHhcccCCCCcEEEEEcCCCceeccc
Confidence 99999999999999999999999999999987653
No 33
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=5.4e-41 Score=268.99 Aligned_cols=181 Identities=12% Similarity=0.080 Sum_probs=162.5
Q ss_pred CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcC-CCCCH
Q psy1779 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQ-SPISP 82 (204)
Q Consensus 4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~~~~ 82 (204)
++|+|+|||+++||||||+|++. ++.+|||+|++|++|+++|+.+|++.+++.++.+++.|++.++ .++++
T Consensus 25 ~~g~T~VGIk~kdgVVLaaek~~--------~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~~~~~~~~~~~~~v 96 (228)
T TIGR03691 25 ARGRSVVVLTYADGILFVAENPS--------RSLHKISELYDRIGFAAVGKYNEFENLRRAGIRYADMRGYSYDRRDVTG 96 (228)
T ss_pred HcCCcEEEEEeCCeEEEEEecCC--------CCcCcEEEecCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcCCCCccH
Confidence 57999999999999999999962 3579999999999999999999999999999999999999997 68999
Q ss_pred HHHHHHHHHHHHhc-cc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecc-eEEEccchhhHHHhhhccCCCCCCH
Q psy1779 83 DTFAAIASWELYAR-KL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTD-FVAGGSAQNMIMGIGESFWQPGLSP 159 (204)
Q Consensus 83 ~~la~~l~~~l~~~-r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~-~~a~G~g~~~~~~~Le~~~~~~ms~ 159 (204)
+.+++.+++.++.. +. .|||+|++|+||||+++.+|+||++||+|++. +++ ++|+|++++.++++||+.|+++||.
T Consensus 97 ~~la~~~tq~~~~~~~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~-~~~~~~aiG~gs~~a~~~Lek~y~~~ms~ 175 (228)
T TIGR03691 97 RGLANAYAQTLGTIFTEQQKPYEVEICVAEVGETPDQDQLYRITFDGSIV-DERGFVVMGGTTEPIATALKESYRDGLSL 175 (228)
T ss_pred HHHHHHHHhhcccccccccCcceEEEEEEEEcCCCCCCEEEEECCCCCce-eccceEEECCChHHHHHHHHHhcCCCCCH
Confidence 99999888776432 11 28999999999998434789999999999999 565 8999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH--hhccccCCCEEEEEEcCCc
Q psy1779 160 EQLFEVCSQVVIQAC--ERDTKSGWGATVYVVEPDK 193 (204)
Q Consensus 160 ~ea~~~~~~~l~~~~--~~d~~~~~~~~v~~i~~~g 193 (204)
+||++++.+||..+. +|+..++.+++|.++++++
T Consensus 176 eeai~la~~aL~~~~~~~r~~~~~~~iEv~ii~k~~ 211 (228)
T TIGR03691 176 ADALGLAVQALRAGGNGEKRELDAASLEVAVLDRSR 211 (228)
T ss_pred HHHHHHHHHHHHHHhccccccCCccceEEEEEeCCC
Confidence 999999999999995 4667889999999999765
No 34
>KOG0174|consensus
Probab=100.00 E-value=2.2e-40 Score=249.46 Aligned_cols=195 Identities=22% Similarity=0.320 Sum_probs=187.3
Q ss_pred CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP 82 (204)
Q Consensus 3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 82 (204)
...|||++|++|++||||++|+|.+.|.++.++-.+|+.+|.|+|+|+-||..+|.|.+.+.++.++..|...+++++++
T Consensus 16 vstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p~v 95 (224)
T KOG0174|consen 16 VSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPPLV 95 (224)
T ss_pred cccCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCchH
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHH
Q psy1779 83 DTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQL 162 (204)
Q Consensus 83 ~~la~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea 162 (204)
...|+.+++++|+.|. -+.+.+||||||+ ..+.++|.+-.-|... +.++++-|+|+.+++++++..|+++||+||+
T Consensus 96 ~~aA~l~r~~~Y~~re--~L~AgliVAGwD~-~~gGqVY~iplGG~l~-rq~~aIgGSGStfIYGf~D~~~r~nMt~EE~ 171 (224)
T KOG0174|consen 96 HTAASLFREICYNYRE--MLSAGLIVAGWDE-KEGGQVYSIPLGGSLT-RQPFAIGGSGSTFIYGFCDANWRPNMTLEEC 171 (224)
T ss_pred HHHHHHHHHHHHhCHH--hhhcceEEeeccc-ccCceEEEeecCceEe-ecceeeccCCceeeeeeehhhcCCCCCHHHH
Confidence 9999999999999874 5889999999998 8889999999889988 6899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEEecc
Q psy1779 163 FEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIAT 201 (204)
Q Consensus 163 ~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~~~ 201 (204)
+++..+|+..|++||-.+|+-+.+.+|+++|++++.+++
T Consensus 172 ~~fvk~Av~lAi~rDGsSGGviR~~~I~~~Gver~~~~~ 210 (224)
T KOG0174|consen 172 VRFVKNAVSLAIERDGSSGGVIRLVIINKAGVERRFFPG 210 (224)
T ss_pred HHHHHHHHHHHHhccCCCCCEEEEEEEccCCceEEEecC
Confidence 999999999999999999999999999999999998876
No 35
>KOG0175|consensus
Probab=100.00 E-value=1e-38 Score=249.71 Aligned_cols=193 Identities=21% Similarity=0.233 Sum_probs=185.2
Q ss_pred CCCCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCC
Q psy1779 1 MSLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPI 80 (204)
Q Consensus 1 ~~~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 80 (204)
|+-.+|||.+|++|+.||++|+|+|.+.|.++-+..++||.+||+++.-+++|-.+|++.+.+.+-.++++|++++++.|
T Consensus 66 i~~~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeri 145 (285)
T KOG0175|consen 66 IKFAHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERI 145 (285)
T ss_pred eeecCCceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcce
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHH
Q psy1779 81 SPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPE 160 (204)
Q Consensus 81 ~~~~la~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ 160 (204)
++.+.+++|++++|++|. --+.+...+||||+ .+|.||++|..|... +.+-+++|+|+.++++.|++.|++|||.|
T Consensus 146 SVsaASKllsN~~y~YkG-mGLsmGtMi~G~Dk--~GP~lyYVDseG~Rl-~G~~FSVGSGs~yAYGVLDsgYr~dls~e 221 (285)
T KOG0175|consen 146 SVSAASKLLSNMVYQYKG-MGLSMGTMIAGWDK--KGPGLYYVDSEGTRL-SGDLFSVGSGSTYAYGVLDSGYRYDLSDE 221 (285)
T ss_pred ehHHHHHHHHHHHhhccC-cchhheeeEeeccC--CCCceEEEcCCCCEe-cCceEeecCCCceeEEeeccCCCCCCCHH
Confidence 999999999999999987 56789999999996 899999999999999 68999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEE
Q psy1779 161 QLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIR 197 (204)
Q Consensus 161 ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~ 197 (204)
||..+++.|+..|-.||+.||+-+.+++|+++|....
T Consensus 222 EA~~L~rrAI~hAThRDaySGG~vnlyHv~edGW~~v 258 (285)
T KOG0175|consen 222 EAYDLARRAIYHATHRDAYSGGVVNLYHVKEDGWVKV 258 (285)
T ss_pred HHHHHHHHHHHHHHhcccccCceEEEEEECCccceec
Confidence 9999999999999999999999999999999998754
No 36
>KOG0178|consensus
Probab=100.00 E-value=3.1e-38 Score=240.67 Aligned_cols=191 Identities=9% Similarity=0.073 Sum_probs=177.4
Q ss_pred CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHH
Q psy1779 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPD 83 (204)
Q Consensus 4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 83 (204)
.+.+|+||+.++||||||++++.++..+-.+.+.+||++|+|||+|+.+|+++|+..|++.+|..+|.|.++++++++.+
T Consensus 29 s~aGt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt~DAnvL~n~aRi~AQ~yl~~y~e~iP~e 108 (249)
T KOG0178|consen 29 SHAGTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLTSDANVLKNYARIIAQRYLFRYGEEIPCE 108 (249)
T ss_pred hhhcceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEecccccHHHHHHHHHHHHHHHHHHhCCCCcHH
Confidence 46789999999999999999999988777788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH--Hhc-ccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCC-CH
Q psy1779 84 TFAAIASWEL--YAR-KLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGL-SP 159 (204)
Q Consensus 84 ~la~~l~~~l--~~~-r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~m-s~ 159 (204)
.|++.++++. |++ ...|||||++|.+|||. ..|.+||+.||+|++. .|++.|+|.++..++++|+..|+++. ++
T Consensus 109 qLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~-~~gyqLy~SdPSGny~-gWka~ciG~N~~Aa~s~Lkqdykdd~~~~ 186 (249)
T KOG0178|consen 109 QLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDD-RYGYQLYQSDPSGNYG-GWKATCIGANSGAAQSMLKQDYKDDENDL 186 (249)
T ss_pred HHHHHHHHHHHHHhhccCcCCCceeeeeeceec-CcceEEEecCCCCCcc-ccceeeeccchHHHHHHHHhhhccccccH
Confidence 9999999986 444 33499999999999997 7789999999999999 79999999999999999999998765 59
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEE
Q psy1779 160 EQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTI 196 (204)
Q Consensus 160 ~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~ 196 (204)
+||..++++.|..+++.+.++...+|+++++++.-+.
T Consensus 187 ~eA~~laikvL~kt~d~~~lt~eklEia~~~k~~~k~ 223 (249)
T KOG0178|consen 187 EEAKALAIKVLSKTLDSGSLTAEKLEIATITKDCNKT 223 (249)
T ss_pred HHHHHHHHHHHHhhcccCCCChhheEEEEEEecCCce
Confidence 9999999999999999999999999999999976543
No 37
>KOG0173|consensus
Probab=100.00 E-value=3.6e-38 Score=246.07 Aligned_cols=190 Identities=20% Similarity=0.260 Sum_probs=181.1
Q ss_pred CCCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCC
Q psy1779 2 SLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPIS 81 (204)
Q Consensus 2 ~~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 81 (204)
.+..|||++|+.+|||||+++|+|.+.|..+..++..|||.|.++|+|+.+|..+|..++.+.+..+...|++..++.+.
T Consensus 33 ~tkTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t~R~~r 112 (271)
T KOG0173|consen 33 ATKTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRLNTGRKPR 112 (271)
T ss_pred ccccCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHhccCCCCc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHH
Q psy1779 82 PDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQ 161 (204)
Q Consensus 82 ~~~la~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~e 161 (204)
+-..-+++.+.|+.++ .-.++.+|++|+|+ .||+||.+-|.|+.- .-+|.++|+|+..++++||..|++||+.||
T Consensus 113 Vv~A~~mlkQ~LFrYq--G~IgA~LiiGGvD~--TGpHLy~i~phGStd-~~Pf~alGSGslaAmsvlEsr~k~dlt~ee 187 (271)
T KOG0173|consen 113 VVTALRMLKQHLFRYQ--GHIGAALILGGVDP--TGPHLYSIHPHGSTD-KLPFTALGSGSLAAMSVLESRWKPDLTKEE 187 (271)
T ss_pred eeeHHHHHHHHHHHhc--CcccceeEEccccC--CCCceEEEcCCCCcC-ccceeeeccchHHHHHHHHHhcCcccCHHH
Confidence 9999999999997665 36899999999997 899999999999999 699999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEE
Q psy1779 162 LFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTI 196 (204)
Q Consensus 162 a~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~ 196 (204)
|.+++.+|+...+..|-.||.|+++|+|++.++.+
T Consensus 188 a~~Lv~eAi~AGi~nDLgSGsnvdlcVI~~~~~~~ 222 (271)
T KOG0173|consen 188 AIKLVCEAIAAGIFNDLGSGSNVDLCVITKKGVEY 222 (271)
T ss_pred HHHHHHHHHHhhhccccCCCCceeEEEEeCCCccc
Confidence 99999999999999999999999999999988776
No 38
>KOG0185|consensus
Probab=100.00 E-value=5.9e-38 Score=242.58 Aligned_cols=193 Identities=20% Similarity=0.286 Sum_probs=181.7
Q ss_pred CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhH-HhcCCCCCH
Q psy1779 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYV-ASEQSPISP 82 (204)
Q Consensus 4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~-~~~~~~~~~ 82 (204)
-+||++||++|+|||+||+|+..++|++....+++||++++||+.+|++|..+|+|.+.+.+.......+ +..++.+.|
T Consensus 39 vTGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdisD~Q~i~r~L~~l~iedn~~~Dg~~l~P 118 (256)
T KOG0185|consen 39 VTGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDISDFQYIQRVLEQLVIEDNRLDDGQSLGP 118 (256)
T ss_pred eccceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCccHHHHHHHHHHHHHHHhcccccccccccCh
Confidence 3699999999999999999999999999999999999999999999999999999999999998876644 566799999
Q ss_pred HHHHHHHHHHHHhcccC-CCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCC---CCCC
Q psy1779 83 DTFAAIASWELYARKLT-SPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQ---PGLS 158 (204)
Q Consensus 83 ~~la~~l~~~l~~~r~~-~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~---~~ms 158 (204)
+.++++|.++||.+|++ .|++..++|||+|. ++.|+|-.+|..|..+ +.+..|+|.|...++++|++.|. ++++
T Consensus 119 k~ih~yltrvlY~rRsKmnPlwntlvVgGv~~-~g~~~lg~V~~~G~~Y-~~~~vATGfg~hLa~P~lR~~~~~k~~~~s 196 (256)
T KOG0185|consen 119 KAIHSYLTRVLYARRSKMNPLWNTLVVGGVDN-TGEPFLGYVDLLGVAY-ESPVVATGFGAHLALPLLRDEWEKKGEDLS 196 (256)
T ss_pred HHHHHHHHHHHHHhhhccCchhhheeEeeecC-CCCeeEEEEeeccccc-cCchhhhhhHHHhhhHHHHHhhhccchhhH
Confidence 99999999999999875 89999999999997 8999999999999999 69999999999999999999987 5799
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEE
Q psy1779 159 PEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRK 198 (204)
Q Consensus 159 ~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~ 198 (204)
.+||..++.+||+...+||+.+.++++|++|+++|+++..
T Consensus 197 ~eeA~~li~~cMrVL~YRD~ra~n~fqva~v~~eGv~i~~ 236 (256)
T KOG0185|consen 197 REEAEALIEKCMRVLYYRDARASNEFQVATVDEEGVTISK 236 (256)
T ss_pred HHHHHHHHHHHHHHHhccccccccceEEEEEcccceEecC
Confidence 9999999999999999999999999999999999998753
No 39
>KOG0183|consensus
Probab=100.00 E-value=1.8e-37 Score=237.07 Aligned_cols=185 Identities=17% Similarity=0.277 Sum_probs=169.7
Q ss_pred CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP 82 (204)
Q Consensus 3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 82 (204)
..+|+|+||++++|+|||+.+++... .+...+...||..+++|++++++|+.+|++.|++++|.+++.|+++.+.|+++
T Consensus 27 vrkGstaVgvrg~~~vvlgvEkkSv~-~Lq~~r~~rkI~~ld~hV~mafaGl~aDArilinrArvecqShrlt~edpvtv 105 (249)
T KOG0183|consen 27 VRKGSTAVGVRGNNCVVLGVEKKSVP-KLQDERTVRKISMLDDHVVMAFAGLTADARILINRARVECQSHRLTLEDPVTV 105 (249)
T ss_pred HhcCceEEEeccCceEEEEEeecchh-hhhhhhhhhhheeecceeeEEecCCCccceeehhhHhHhhhhhhcccCCCcHH
Confidence 46899999999999999999998764 56667779999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--Hhcc-cCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCC--C
Q psy1779 83 DTFAAIASWEL--YARK-LTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPG--L 157 (204)
Q Consensus 83 ~~la~~l~~~l--~~~r-~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~--m 157 (204)
+.++++++.+. |++- ..||||++.|++|||+ ++.|+||++||+|.++ +|++.|+|.+++.+..+||++|.++ .
T Consensus 106 eyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~-~g~p~lyqtePsG~f~-ewka~aiGr~sk~VrEflEK~y~e~~~~ 183 (249)
T KOG0183|consen 106 EYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDP-DGTPRLYQTEPSGIFS-EWKANAIGRSSKTVREFLEKNYKEEAIA 183 (249)
T ss_pred HHHHHHHHHhhhhhhccCCcccccceEEEEeeCC-CCCeeeEeeCCCcchh-hhhccccccccHHHHHHHHHhccccccc
Confidence 99999999986 4442 2399999999999999 7799999999999999 7999999999999999999999876 7
Q ss_pred CHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCc
Q psy1779 158 SPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDK 193 (204)
Q Consensus 158 s~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g 193 (204)
+..+++++++++|....+. .+++++++++++.+
T Consensus 184 ~~~~~ikL~ir~LleVvqs---~~~nie~aVm~~~~ 216 (249)
T KOG0183|consen 184 TEGETIKLAIRALLEVVQS---GGKNIEVAVMKRRK 216 (249)
T ss_pred ccccHHHHHHHHHHHHhhc---CCCeeEEEEEecCC
Confidence 8899999999999999874 47899999999877
No 40
>KOG0181|consensus
Probab=100.00 E-value=4.9e-37 Score=231.55 Aligned_cols=190 Identities=15% Similarity=0.150 Sum_probs=175.0
Q ss_pred CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP 82 (204)
Q Consensus 3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 82 (204)
...|.+.||++-.||||||++++..+ .+....+..|+++|.+||+|.+||..+|.+.+++..|..++.|...++++|++
T Consensus 29 v~~G~~SvGi~A~nGvVlatekk~~s-~L~~~~sv~KV~~i~~~IG~vYSGmgpD~RvlV~~~rkiAe~Yy~vY~e~~pt 107 (233)
T KOG0181|consen 29 VVNGQTSVGIKAANGVVLATEKKDVS-PLVDEESVRKVEKITPHIGCVYSGMGPDYRVLVHKSRKIAEQYYRVYGEPIPT 107 (233)
T ss_pred HhCCCCceeeeecCceEEEeccCCCC-ccchhhhhhhHhhccCCcceEEecCCCceeehhhHHHHHHHHHHHHhcCCCCH
Confidence 35789999999999999999998764 57778889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc--cc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCH
Q psy1779 83 DTFAAIASWELYAR--KL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSP 159 (204)
Q Consensus 83 ~~la~~l~~~l~~~--r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~ 159 (204)
..+...++.++++. .. .||||+++++||||. ++|.||++||+|++. .|+++|+|.+...++.+||++|+++|.+
T Consensus 108 ~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~--~~p~LyQvdPSGsyf-~wkatA~Gkn~v~aktFlEkR~~edlel 184 (233)
T KOG0181|consen 108 TQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDE--GGPLLYQVDPSGSYF-AWKATAMGKNYVNAKTFLEKRYNEDLEL 184 (233)
T ss_pred HHHHHHHHHHHHHHhhcCCccccceEEEEeecCC--CceeEEEECCcccee-ehhhhhhccCcchHHHHHHHHhcccccc
Confidence 99999999998664 22 399999999999996 899999999999999 7999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEE
Q psy1779 160 EQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIR 197 (204)
Q Consensus 160 ~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~ 197 (204)
|++++.++..|++..+.. .+.++++|.++..++.+..
T Consensus 185 dd~ihtailtlkE~fege-~~~~nieigv~~~~~F~~l 221 (233)
T KOG0181|consen 185 DDAIHTAILTLKESFEGE-MTAKNIEIGVCGENGFRRL 221 (233)
T ss_pred chHHHHHHHHHHHHhccc-cccCceEEEEecCCceeec
Confidence 999999999999999876 6678999999997776643
No 41
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=100.00 E-value=3.6e-35 Score=225.28 Aligned_cols=168 Identities=15% Similarity=0.113 Sum_probs=147.9
Q ss_pred CceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEe-eCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHH
Q psy1779 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQM-SPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDT 84 (204)
Q Consensus 6 g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 84 (204)
|+|++|++++||||||+|+|.+.|.++.+++.+||++| ++|++++.||..+|++.|.+.++.+++.|+. ++ ++.
T Consensus 1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~----~~-~~~ 75 (172)
T PRK05456 1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQG----NL-LRA 75 (172)
T ss_pred CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccC----cc-HHH
Confidence 79999999999999999999999999999999999999 9999999999999999999999999999872 22 566
Q ss_pred HHHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeee-cceEEEccchhhHHHhhhccCC-CCCCHHHH
Q psy1779 85 FAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRK-TDFVAGGSAQNMIMGIGESFWQ-PGLSPEQL 162 (204)
Q Consensus 85 la~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~-~~~~a~G~g~~~~~~~Le~~~~-~~ms~~ea 162 (204)
+++.++.++ ..+..+|+.+++|+ +|. |+||.+||.|+..++ .++.++|+|+.+++++||+.|+ ++| ||
T Consensus 76 ~a~l~~~l~-~~~~~~~l~~~~lv--~d~----~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~~~~m---eA 145 (172)
T PRK05456 76 AVELAKDWR-TDRYLRRLEAMLIV--ADK----EHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLENTDL---SA 145 (172)
T ss_pred HHHHHHHHH-hccCCCccEEEEEE--EcC----CcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhhhcCCC---CH
Confidence 676665442 22322688899998 453 699999999999743 2799999999999999999999 999 99
Q ss_pred HHHHHHHHHHHHhhccccCCCEEEEE
Q psy1779 163 FEVCSQVVIQACERDTKSGWGATVYV 188 (204)
Q Consensus 163 ~~~~~~~l~~~~~~d~~~~~~~~v~~ 188 (204)
++++.+|++.+.+||..++++++|-.
T Consensus 146 ~~la~kai~~A~~Rd~~sg~~i~v~~ 171 (172)
T PRK05456 146 EEIAEKALKIAADICIYTNHNITIEE 171 (172)
T ss_pred HHHHHHHHHHHHHhCeeCCCcEEEEE
Confidence 99999999999999999999998864
No 42
>KOG0184|consensus
Probab=100.00 E-value=1.1e-35 Score=228.35 Aligned_cols=189 Identities=12% Similarity=0.174 Sum_probs=166.4
Q ss_pred CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP 82 (204)
Q Consensus 3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 82 (204)
.++++|+|||+||||||+++++.++++ +.......|||.|++||+++.+|+.+|.+.+..++|.++..|+.+++.|++.
T Consensus 31 ven~~T~IGIk~kdGVVl~vEKli~Sk-Ly~p~sn~ri~~V~r~iG~avaGl~~Dg~~l~~~ar~ea~~~~~~y~~piP~ 109 (254)
T KOG0184|consen 31 VENSGTCIGIKCKDGVVLAVEKLITSK-LYEPGSNERIFSVDRHIGMAVAGLIPDGRHLVNRARDEAASWRKNYGDPIPG 109 (254)
T ss_pred HhcCCcEEEEecCCeEEEEEeeeeccc-ccccCCCCceEeecccccEEEeccccchHHHHHHHHHHHHHHHHhcCCCCch
Confidence 468999999999999999999999875 4456778999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc-c--cCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCH
Q psy1779 83 DTFAAIASWELYAR-K--LTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSP 159 (204)
Q Consensus 83 ~~la~~l~~~l~~~-r--~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~ 159 (204)
..++..++.+.+-+ + .-||||++.++++||. ++|+||.++|+|..+ .++.+|+|.|.|.+++.||++--.+|+.
T Consensus 110 ~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~--~g~~LymiepSG~~~-~Y~~aaiGKgrq~aKtElEKL~~~~mt~ 186 (254)
T KOG0184|consen 110 KHLADRVADYVHAFTLYSSVRPFGASTILGSYDD--EGPQLYMIEPSGSSY-GYKGAAIGKGRQAAKTELEKLKIDEMTC 186 (254)
T ss_pred HHHHHHHHhhhheeehhhccccccceEEEEEEeC--CCceEEEEcCCCCcc-ceeeeeccchhHHHHHHHHhcccccccH
Confidence 99999999987654 1 1299999999999995 899999999999999 7999999999999999999998889999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCEEEEEEcC--CceE
Q psy1779 160 EQLFEVCSQVVIQACERDTKSGWGATVYVVEP--DKVT 195 (204)
Q Consensus 160 ~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~--~g~~ 195 (204)
+|+++.+.+.+..+.+..--..-.+|+.++.. +|.+
T Consensus 187 ~e~VkeaakIiY~~HDe~KdK~feiEm~wvg~eTnG~h 224 (254)
T KOG0184|consen 187 KELVKEAAKIIYKVHDENKDKEFEIEMGWVGEETNGLH 224 (254)
T ss_pred HHHHHHHHheeEeecccccCcceEEEEEEEEeecCCcc
Confidence 99999999999888764322233567777664 4544
No 43
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=100.00 E-value=4.8e-34 Score=217.66 Aligned_cols=165 Identities=16% Similarity=0.106 Sum_probs=142.4
Q ss_pred ceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeC-cEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHH
Q psy1779 7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSP-HLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTF 85 (204)
Q Consensus 7 ~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 85 (204)
+|+||++++||||||+|+|.+.|.++.+++.+||++|++ |++|+++|..+|++.|.++++.+++.|+.+.++ .+
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~a 75 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR-----AA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH-----HH
Confidence 699999999999999999999999999999999999999 999999999999999999999999999987663 45
Q ss_pred HHHHHHHHHhcccCCCce-eeEEEEEEeCCCCceEEEEEcCCCCeeeec--ceEEEccchhhHHHhhhccCCCC-CCHHH
Q psy1779 86 AAIASWELYARKLTSPLF-INPIIAGFYPDSGEVFLSTLDMAGCETRKT--DFVAGGSAQNMIMGIGESFWQPG-LSPEQ 161 (204)
Q Consensus 86 a~~l~~~l~~~r~~~P~~-v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~--~~~a~G~g~~~~~~~Le~~~~~~-ms~~e 161 (204)
++.+..++ ..+. +|+. +.++++ |. ++||.+||.|... +. +++++|||+.+++++||..|+++ ||
T Consensus 76 a~l~~~l~-~~~~-~~~l~a~~iv~--~~----~~ly~id~~G~~i-e~~~~~~a~GSGS~ya~g~ld~~yk~~~ms--- 143 (171)
T cd01913 76 VELAKDWR-TDRY-LRRLEAMLIVA--DK----EHTLLISGNGDVI-EPDDGIAAIGSGGNYALAAARALLDHTDLS--- 143 (171)
T ss_pred HHHHHHHH-hccC-cCceEEEEEEe--CC----CcEEEECCCCCEe-ccCCCeEEEeCCHHHHHHHHHHhhccCCCC---
Confidence 55544443 2233 4555 555544 43 3899999999999 45 59999999999999999999995 99
Q ss_pred HHHHHHHHHHHHHhhccccCCCEEEEE
Q psy1779 162 LFEVCSQVVIQACERDTKSGWGATVYV 188 (204)
Q Consensus 162 a~~~~~~~l~~~~~~d~~~~~~~~v~~ 188 (204)
+.+++.+|++.|.+||+.+|++++|-.
T Consensus 144 ~~~la~~Av~~A~~rd~~tg~~i~~~~ 170 (171)
T cd01913 144 AEEIARKALKIAADICIYTNHNITVEE 170 (171)
T ss_pred HHHHHHHHHHHHHhhCcccCCCEEEEe
Confidence 569999999999999999999998764
No 44
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=100.00 E-value=3e-33 Score=213.28 Aligned_cols=167 Identities=16% Similarity=0.114 Sum_probs=142.2
Q ss_pred ceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEe-eCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHH
Q psy1779 7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQM-SPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTF 85 (204)
Q Consensus 7 ~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 85 (204)
+|+||++++||||||+|+|.+.|.++.+++.+||++| ++|++|+.+|..+|++.|.++++.+++.|+++. .+.+
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~ 75 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHH
Confidence 6999999999999999999999999999999999999 599999999999999999999999999987632 4667
Q ss_pred HHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeee-cceEEEccchhhHHHhhhccC-CCCCCHHHHH
Q psy1779 86 AAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRK-TDFVAGGSAQNMIMGIGESFW-QPGLSPEQLF 163 (204)
Q Consensus 86 a~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~-~~~~a~G~g~~~~~~~Le~~~-~~~ms~~ea~ 163 (204)
++.++... ..+..+.+.+.++++ |. ++||.+||.|...++ .+++++|||+.+++++||..| +++|+ |+
T Consensus 76 a~l~~~~~-~~~~~~~l~a~~iv~--~~----~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~~~~~s---a~ 145 (171)
T TIGR03692 76 VELAKDWR-TDRYLRRLEAMLIVA--DK----ETSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALLRNTDLS---AE 145 (171)
T ss_pred HHHHHHHh-hcccccccEEEEEEE--cC----CCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhhhcCCCC---HH
Confidence 77776631 122212344666654 43 389999999999942 269999999999999999999 57787 99
Q ss_pred HHHHHHHHHHHhhccccCCCEEEEE
Q psy1779 164 EVCSQVVIQACERDTKSGWGATVYV 188 (204)
Q Consensus 164 ~~~~~~l~~~~~~d~~~~~~~~v~~ 188 (204)
+++.+++..|.+||+.+|++++|-.
T Consensus 146 ~la~~Av~~A~~rd~~sg~~i~v~~ 170 (171)
T TIGR03692 146 EIAREALKIAADICIYTNHNITIEE 170 (171)
T ss_pred HHHHHHHHHHHhhCccCCCCEEEEe
Confidence 9999999999999999999998864
No 45
>KOG0863|consensus
Probab=100.00 E-value=7.3e-34 Score=219.37 Aligned_cols=185 Identities=15% Similarity=0.142 Sum_probs=168.5
Q ss_pred CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP 82 (204)
Q Consensus 3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 82 (204)
.+.|++.||++.++..||++-+|..+- +++.++|||+|++|+++.++|+++|++.|.++++.++..+++.+++++++
T Consensus 29 vkqGsatVGLks~thaVLvAl~r~~se---Lss~QkKi~~iD~h~g~siAGLt~Darvl~~Ylr~ec~~~~~~~~r~~pv 105 (264)
T KOG0863|consen 29 VKQGSATVGLKSRTHAVLVALKRAQSE---LSSHQKKIFKIDDHIGISIAGLTADARVLSRYLRQECLNSRFIYGRPLPV 105 (264)
T ss_pred HhcccceEeecccceEEEeeeccchhH---HHHhhheeEecccccceEEeccCcchHHHHHHHHHHHhhhhhccCCcccH
Confidence 467999999999999999998887542 46788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc--cc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCC--CCC
Q psy1779 83 DTFAAIASWELYAR--KL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQ--PGL 157 (204)
Q Consensus 83 ~~la~~l~~~l~~~--r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~--~~m 157 (204)
.-+...+.+.++.. |. +|||||.++++|||+ .||+||.++|+|++. +++..+||+.+|.+.++||+++. +++
T Consensus 106 ~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe--~G~hl~e~~Psg~v~-e~~g~sIGsRSQsARTyLEr~~e~f~~~ 182 (264)
T KOG0863|consen 106 LRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDE--SGPHLYEFCPSGNVF-ECKGMSIGSRSQSARTYLERNLEEFEDS 182 (264)
T ss_pred HHHHHHHHHHHhhhhhhhCCccccceEEEEeecC--CCceeEEEcCCccEE-EEeeeecccchhhHHHHHHHHHHHHhcC
Confidence 99999998887643 33 389999999999996 899999999999999 79999999999999999999875 689
Q ss_pred CHHHHHHHHHHHHHHHHhhc-cccCCCEEEEEEcCCc
Q psy1779 158 SPEQLFEVCSQVVIQACERD-TKSGWGATVYVVEPDK 193 (204)
Q Consensus 158 s~~ea~~~~~~~l~~~~~~d-~~~~~~~~v~~i~~~g 193 (204)
+.||.+..++.||+.+...| .+++.+++|+|+.||.
T Consensus 183 ~~eELI~~gi~Alr~tlp~de~lt~~nvsI~Ivgkd~ 219 (264)
T KOG0863|consen 183 SPEELIKHGIMALRETLPEDEDLTGENVSIAIVGKDE 219 (264)
T ss_pred CHHHHHHHHHHHHHhhcCcccccccceeEEEEEeCCC
Confidence 99999999999999999744 6889999999999974
No 46
>KOG0182|consensus
Probab=100.00 E-value=7.1e-32 Score=206.01 Aligned_cols=194 Identities=17% Similarity=0.163 Sum_probs=177.6
Q ss_pred CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHH
Q psy1779 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPD 83 (204)
Q Consensus 4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 83 (204)
+.|-|.||+++||++|+++.+++.. +++.++.+..+|+|+++|+|+++|..+|++..+.+++.++..+++.+|.+|+++
T Consensus 34 ~~gltsVavrgkDcavvvsqKkvpD-KLld~~tvt~~f~itk~ig~v~tG~~aDar~~v~rar~eAa~~~yk~Gyemp~D 112 (246)
T KOG0182|consen 34 QAGLTSVAVRGKDCAVVVTQKKVPD-KLLDSSTVTHLFRITKKIGCVITGMIADARSQVQRARYEAAEFRYKYGYEMPCD 112 (246)
T ss_pred cCCCceEEEcCCceEEEEecccCcc-cccccccceeEEEeeccceEEEecCCcchHHHHHHHHHHHHhhhhhcCCCCCHH
Confidence 3488999999999999999999875 566678899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH--Hhccc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCC--CC
Q psy1779 84 TFAAIASWEL--YARKL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPG--LS 158 (204)
Q Consensus 84 ~la~~l~~~l--~~~r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~--ms 158 (204)
.||++++++- |+++. +||+||.+++.|+|+ +.||.+|.+||.|.+. .+++.+.|.....+.++||++|+++ .|
T Consensus 113 iL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~-E~gP~vYk~DpAGyy~-g~kAtaaG~Kq~e~tsfLEKk~Kk~~~~t 190 (246)
T KOG0182|consen 113 ILAKRMADKSQVYTQNAAMRPLGVAATLIGVDE-ERGPSVYKTDPAGYYY-GFKATAAGVKQQEATSFLEKKYKKDIDLT 190 (246)
T ss_pred HHHHHHhhHHHHHhhhhhhcccceeEEEEEecc-ccCcceEeecCccccc-cceeeecccchhhHHHHHHHhhccCccch
Confidence 9999999985 55543 499999999999998 8899999999999999 7999999999999999999999977 77
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEEecc
Q psy1779 159 PEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIAT 201 (204)
Q Consensus 159 ~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~~~ 201 (204)
.+|++++++.||..++.-|.. ..++||.+++++.-+++.|..
T Consensus 191 ~~e~ve~ai~al~~sl~~Dfk-~se~EVgvv~~~~p~f~~Ls~ 232 (246)
T KOG0182|consen 191 FEETVETAISALQSSLGIDFK-SSELEVGVVTVDNPEFRILSA 232 (246)
T ss_pred HHHHHHHHHHHHHHHHhcccC-CcceEEEEEEcCCcceeeccH
Confidence 999999999999999998844 569999999999888887754
No 47
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.98 E-value=2.7e-30 Score=195.52 Aligned_cols=162 Identities=22% Similarity=0.206 Sum_probs=153.4
Q ss_pred ceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Q psy1779 7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFA 86 (204)
Q Consensus 7 ~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 86 (204)
+|+||++++|||++|+|++.+.+......+.+|+++++++++++++|..+|++.+.++++.+++.|+.++++++++..++
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALA 80 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999988777678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeec-ceEEEccchhhHHHhhhccCCCCCCHHHHHHH
Q psy1779 87 AIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKT-DFVAGGSAQNMIMGIGESFWQPGLSPEQLFEV 165 (204)
Q Consensus 87 ~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~-~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~~ 165 (204)
+.+++.++..+..+|+++++|+||+|+ ++|+||.+||+|.+. +. .++++|+++..+.++|++.|+++|+.+|++++
T Consensus 81 ~~~~~~~~~~~~~~p~~~~~iiag~~~--~~~~l~~id~~g~~~-~~~~~~~~G~~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (164)
T cd01901 81 KELAKLLQVYTQGRPFGVNLIVAGVDE--GGGNLYYIDPSGPVI-ENPGAVATGSRSQRAKSLLEKLYKPDMTLEEAVEL 157 (164)
T ss_pred HHHHHHHHHhcCCCCcceEEEEEEEcC--CCCEEEEECCCcCEe-ecCcEEEECCCCHHHHHHHHHHhcCCCCHHHHHHH
Confidence 999999987754589999999999996 789999999999999 57 99999999999999999999999999999999
Q ss_pred HHHHHH
Q psy1779 166 CSQVVI 171 (204)
Q Consensus 166 ~~~~l~ 171 (204)
+.++|.
T Consensus 158 ~~~~l~ 163 (164)
T cd01901 158 ALKALK 163 (164)
T ss_pred HHHHHh
Confidence 999985
No 48
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=3.8e-17 Score=120.65 Aligned_cols=173 Identities=17% Similarity=0.130 Sum_probs=135.7
Q ss_pred CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeC-cEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCC
Q psy1779 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSP-HLYLINPGLCADGMQFAEKMTLRTANYVASEQSPIS 81 (204)
Q Consensus 3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 81 (204)
+.+|||+++++-++-|+||+|.++|.|+.++..+..|+.+|.+ ++..|++|.++|+..|.+.++.+++.|+-+--+ .
T Consensus 1 ~~h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~g~L~r--a 78 (178)
T COG5405 1 TFHMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQGDLFR--A 78 (178)
T ss_pred CceeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHccCcHHH--H
Confidence 3579999999999999999999999999999999888888875 799999999999999999999999887522111 3
Q ss_pred HHHHHHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeee-cceEEEccchhhHHHhhhccCC-CCCCH
Q psy1779 82 PDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRK-TDFVAGGSAQNMIMGIGESFWQ-PGLSP 159 (204)
Q Consensus 82 ~~~la~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~-~~~~a~G~g~~~~~~~Le~~~~-~~ms~ 159 (204)
.-++++.++.--|-+ -+-+-+||+ |+ -.+|-+...|...++ .+..+||||..++++.....++ +++|
T Consensus 79 avelaKdwr~Dk~lr----~LEAmllVa--d~----~~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~~~ls- 147 (178)
T COG5405 79 AVELAKDWRTDKYLR----KLEAMLLVA--DK----THILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMENTELS- 147 (178)
T ss_pred HHHHHHhhhhhhHHH----HHhhheeEe--CC----CcEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhccCCC-
Confidence 344555554333332 345556665 43 358888888987754 4489999999999998888775 4777
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCEEEEEEc
Q psy1779 160 EQLFEVCSQVVIQACERDTKSGWGATVYVVE 190 (204)
Q Consensus 160 ~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~ 190 (204)
|.+++.++|..+.+-+.+++.++.|..++
T Consensus 148 --A~eIa~~sl~iA~eiciyTN~ni~ve~l~ 176 (178)
T COG5405 148 --AREIAEKSLKIAGDICIYTNHNIVVEELR 176 (178)
T ss_pred --HHHHHHHHHhhhheEEEecCCcEEEEEee
Confidence 77789999999988888888888877664
No 49
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.2e-13 Score=105.81 Aligned_cols=189 Identities=15% Similarity=0.024 Sum_probs=149.3
Q ss_pred CceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEee---Cc-EEEEecCChHHHHHHHHHHHHHHHhhHHh-cCCCC
Q psy1779 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMS---PH-LYLINPGLCADGMQFAEKMTLRTANYVAS-EQSPI 80 (204)
Q Consensus 6 g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~---~~-i~~~~sG~~~D~~~l~~~~~~~~~~~~~~-~~~~~ 80 (204)
||.|||++-..|.|+++|+|...|-.-+ +..+|+|-.. ++ +++..+|..+-.|.+.+.+.+..+.-+.+ ....+
T Consensus 1 MTYCv~l~l~~GlVf~sDsRTNAGvD~i-stfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n~~ 79 (255)
T COG3484 1 MTYCVGLILDFGLVFGSDSRTNAGVDYI-STFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSLLNIP 79 (255)
T ss_pred CceEEEEEeccceEEecccccccCchHH-HHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhhccchhhhhcch
Confidence 6889999999999999999987764432 3456766554 44 67788999999999999998877632221 12344
Q ss_pred CHHHHHHHHHHHH---Hhc-c--c---CCCceeeEEEEEEeCCCCceEEEEEcCCCCeee---ecceEEEccchhhHHHh
Q psy1779 81 SPDTFAAIASWEL---YAR-K--L---TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETR---KTDFVAGGSAQNMIMGI 148 (204)
Q Consensus 81 ~~~~la~~l~~~l---~~~-r--~---~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~---~~~~~a~G~g~~~~~~~ 148 (204)
++.+.+..+.... +.+ + + .--|.|++|++|.-. .+.|.||.+.|.|++.+ +.+|.-+|.. ++-+++
T Consensus 80 sm~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~-G~pp~Ly~IYpqGNFIqaT~etpf~QiGEt-KYGKPi 157 (255)
T COG3484 80 SMYEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIK-GEPPRLYLIYPQGNFIQATPETPFLQIGET-KYGKPI 157 (255)
T ss_pred hHHHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceec-CCCceeEEEccCCCeeecCCCCceeEcccc-ccCchh
Confidence 5666666666543 222 1 1 146889999999986 56689999999999985 5788899987 478999
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEE
Q psy1779 149 GESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIR 197 (204)
Q Consensus 149 Le~~~~~~ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~ 197 (204)
|++.+..+++++|+.++++-+|...+..+.+.|-++++.++.+|.....
T Consensus 158 ldR~i~~~~pLeea~kcaLvS~DSTlkSNiSVGlPldLl~~e~ds~~v~ 206 (255)
T COG3484 158 LDRTITYDTPLEEAAKCALVSFDSTLKSNISVGLPLDLLVYEADSFSVR 206 (255)
T ss_pred hhhhhhccCCHHHHhhheEEecchhhhccccccCCceeEEEeccceeee
Confidence 9999999999999999999999999999999999999999999975543
No 50
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=97.56 E-value=0.0087 Score=46.34 Aligned_cols=155 Identities=12% Similarity=0.141 Sum_probs=96.0
Q ss_pred CceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHH
Q psy1779 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTF 85 (204)
Q Consensus 6 g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 85 (204)
|+.+||..+++|.|+|+|+|. +++-|.-.....|-+. +| .|+--+-++|
T Consensus 1 MSLII~y~GknGaViaGDkR~----------------------I~F~G~~~~re~LEee------LY---sG~IktdeEL 49 (194)
T PF09894_consen 1 MSLIIAYYGKNGAVIAGDKRN----------------------IAFRGDEEKREKLEEE------LY---SGKIKTDEEL 49 (194)
T ss_pred CeEEEEEecCCCcEEecccee----------------------eeecCCHHHHHHHHHH------Hh---CCccCCHHHH
Confidence 678999999999999999973 2556666666655443 22 3444455677
Q ss_pred HHHHHHH---HH--hcccC-CCceeeEEEEEEeCC----CCceEEEEE-------cCCCCeee------ecceEEEccc-
Q psy1779 86 AAIASWE---LY--ARKLT-SPLFINPIIAGFYPD----SGEVFLSTL-------DMAGCETR------KTDFVAGGSA- 141 (204)
Q Consensus 86 a~~l~~~---l~--~~r~~-~P~~v~~lvaG~d~~----~~~p~Ly~i-------d~~G~~~~------~~~~~a~G~g- 141 (204)
.+....+ ++ ..|.. +-.+ .+|+|-+-.. ...-++|-. |-.|.-.. ....+..|..
T Consensus 50 ~kkA~Elgv~i~I~D~r~KV~~~~-~vlvGEV~s~~g~~skRRRiY~t~g~~~Ivei~~~~i~~~~~g~~sgiIVfGNk~ 128 (194)
T PF09894_consen 50 LKKAEELGVKIKITDDREKVRKIG-DVLVGEVTSISGKDSKRRRIYATKGKYAIVEIENDEITNKSRGEGSGIIVFGNKF 128 (194)
T ss_pred HHHHHHcCCEEEEecCchheEEeC-CEEEEEEEEEcCccceeeEEEecCCCEEEEEecCCeEEEEecCCceeEEEECCHH
Confidence 7666654 11 11111 1222 1344433220 133456643 22233220 0112222322
Q ss_pred -hhhHHHhhhccCCCCCCHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCC
Q psy1779 142 -QNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPD 192 (204)
Q Consensus 142 -~~~~~~~Le~~~~~~ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~ 192 (204)
.+.+...|.+.|++.|+++++..+...+|+.+...-+..+..+++...++.
T Consensus 129 ~K~ia~~~lkk~~~~k~~l~~i~~i~~~i~~~~a~~tpsvS~~~d~~~~~~~ 180 (194)
T PF09894_consen 129 TKEIANKELKKYWKPKMSLKDIENIFEKIMEEVASKTPSVSKEYDIYITTKK 180 (194)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhcCCCccCcEEEEEeccc
Confidence 356777888999999999999999999999998877777889999988764
No 51
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.63 E-value=0.21 Score=40.21 Aligned_cols=156 Identities=11% Similarity=0.029 Sum_probs=95.8
Q ss_pred CceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHH
Q psy1779 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTF 85 (204)
Q Consensus 6 g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 85 (204)
|+-+|+..++||.|+|.|+|. +.+-|.-.|.+.|-+. +-.|.--+-++|
T Consensus 1 MtLviay~gknGaviaGDrR~----------------------i~frgdee~re~lEek---------LYsGeIkteEEL 49 (293)
T COG4079 1 MTLVIAYIGKNGAVIAGDRRE----------------------ITFRGDEEDREKLEEK---------LYSGEIKTEEEL 49 (293)
T ss_pred CeEEEEEecCCCcEEeccceE----------------------EEEecChhHHHHHHHH---------hhcCccccHHHH
Confidence 578999999999999999873 2345666666655443 224555566788
Q ss_pred HHHHHHHH-----HhcccC-CCceeeEEEEEEeCCC----CceEEEEEc-------CCCCeee----e--cceEEEccc-
Q psy1779 86 AAIASWEL-----YARKLT-SPLFINPIIAGFYPDS----GEVFLSTLD-------MAGCETR----K--TDFVAGGSA- 141 (204)
Q Consensus 86 a~~l~~~l-----~~~r~~-~P~~v~~lvaG~d~~~----~~p~Ly~id-------~~G~~~~----~--~~~~a~G~g- 141 (204)
++.+..+= ...|.. +-..-+++++-+.... ..-++|.+- ..|+-.- . ....+.|..
T Consensus 50 ~r~aeel~Vki~vtDdr~KVrk~~d~VvvGEV~s~~~~~vkRRRvYAT~Ga~aIvel~gs~vts~~~g~g~aiIv~Gnk~ 129 (293)
T COG4079 50 ARKAEELGVKITVTDDRNKVRKRNDGVVVGEVSSVERGIVKRRRVYATAGAYAIVELRGSEVTSTSQGKGSAIIVFGNKF 129 (293)
T ss_pred HHHHHHcCCEEEEEcchHhhhcccCcEEEEEeecccccceeeeEEeecCCceEEEEecCCeeEeeecCCCceEEEECcHH
Confidence 88777641 111211 2333344555444310 123344332 2222110 0 112222322
Q ss_pred -hhhHHHhhhccCCCCCCHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCC
Q psy1779 142 -QNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPD 192 (204)
Q Consensus 142 -~~~~~~~Le~~~~~~ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~ 192 (204)
-+.+..+|.+.|.+.++++++..+...+|..+...-++.+..+++..++++
T Consensus 130 ~Ke~aneflk~~l~~k~~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~ 181 (293)
T COG4079 130 TKEVANEFLKDNLTKKSKLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSN 181 (293)
T ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCC
Confidence 235567788899999999999999999999998776777889999988864
No 52
>PRK09732 hypothetical protein; Provisional
Probab=85.79 E-value=3.7 Score=30.26 Aligned_cols=40 Identities=13% Similarity=0.117 Sum_probs=34.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEE
Q psy1779 155 PGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRK 198 (204)
Q Consensus 155 ~~ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~ 198 (204)
+.||++.|.+++..++..+.+. +.++.|+|++..|...-.
T Consensus 5 ~~Ltl~~A~~~~~aA~~~A~~~----g~~v~iaVvD~~G~l~a~ 44 (134)
T PRK09732 5 VILSQQMASAIIAAGQEEAQKN----NWSVSIAVADDGGHLLAL 44 (134)
T ss_pred ccCCHHHHHHHHHHHHHHHHHh----CCCEEEEEEcCCCCEEEE
Confidence 5699999999999999988875 579999999999976443
No 53
>KOG3361|consensus
Probab=84.28 E-value=1.2 Score=32.62 Aligned_cols=44 Identities=14% Similarity=0.256 Sum_probs=38.8
Q ss_pred EEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHHHHH
Q psy1779 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEV 165 (204)
Q Consensus 121 y~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~~ 165 (204)
..+|-+|.+. ..+|-..|.|+.-+-+.+-..|-..+|+||+..+
T Consensus 71 Ikvd~~g~I~-dakFKTFGCGSAIASSS~aTewvkgkt~dea~kI 114 (157)
T KOG3361|consen 71 IKVDDSGVIE-DAKFKTFGCGSAIASSSLATEWVKGKTLDEALKI 114 (157)
T ss_pred EEECCCCcEE-EeeeeecccchHhhhhHHHHHHHccccHHHHHhc
Confidence 4578899999 6999999999999999999999999999999764
No 54
>COG3193 GlcG Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]
Probab=78.46 E-value=11 Score=27.96 Aligned_cols=39 Identities=28% Similarity=0.260 Sum_probs=33.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEE
Q psy1779 154 QPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTI 196 (204)
Q Consensus 154 ~~~ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~ 196 (204)
.+.+|+++|.+++..++..+.+. ++++.|.+++..|-..
T Consensus 5 ~~~Ls~e~a~~ii~aA~a~a~~~----g~~VtvaVVD~~G~~~ 43 (141)
T COG3193 5 KPVLSLELANKIIAAAVAEAQQL----GVPVTVAVVDAGGHLV 43 (141)
T ss_pred ccccCHHHHHHHHHHHHHHHHHh----CCceEEEEECCCCCEE
Confidence 46899999999999999888763 7999999999999553
No 55
>PF03928 DUF336: Domain of unknown function (DUF336); InterPro: IPR005624 This entry contains uncharacterised proteins, including GlcG P45504 from SWISSPROT. The alignment contains many conserved motifs that are suggestive of cofactor binding and enzymatic activity.; PDB: 2A2L_D 3FPW_A 3FPV_E.
Probab=72.93 E-value=6.3 Score=28.63 Aligned_cols=39 Identities=26% Similarity=0.385 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEE
Q psy1779 155 PGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIR 197 (204)
Q Consensus 155 ~~ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~ 197 (204)
|.+|+++|.+++..+++.+.++ +.++.|+|++..|...-
T Consensus 1 p~l~~~~A~~l~~~a~~~a~~~----g~~v~iaVvd~~G~~~~ 39 (132)
T PF03928_consen 1 PSLTLEDAWKLGDAAVEEARER----GLPVSIAVVDAGGHLLA 39 (132)
T ss_dssp EEE-HHHHHHHHHHHHHHHHHT----T---EEEEEETTS-EEE
T ss_pred CCcCHHHHHHHHHHHHHHHHHh----CCCeEEEEEECCCCEEE
Confidence 3578999999999999999875 45799999999996543
No 56
>COG1754 Uncharacterized C-terminal domain of topoisomerase IA [General function prediction only]
Probab=55.39 E-value=17 Score=30.27 Aligned_cols=56 Identities=16% Similarity=0.197 Sum_probs=41.3
Q ss_pred EEEEeCCCCceEEEEEcCCCCeeeecceEEEccc-hhhHHHhhhccCC-CCCCHHHHHHHHH
Q psy1779 108 IAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSA-QNMIMGIGESFWQ-PGLSPEQLFEVCS 167 (204)
Q Consensus 108 vaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g-~~~~~~~Le~~~~-~~ms~~ea~~~~~ 167 (204)
+.|.||.++.+-.......|-|.+ . ..|.. -..-.+-|-+.|. .++|+|+|+++..
T Consensus 77 ~LG~DP~tG~eI~~k~GryGPYVq-~---~lg~~~~kpkraSLpkg~~~e~ItLE~AL~LLs 134 (298)
T COG1754 77 VLGIDPETGEEIYLKNGRYGPYVQ-E---QLGDPKPKPKRASLPKGWKPETITLEKALKLLS 134 (298)
T ss_pred ccccCCCCCceeEEeccCCCceee-e---ecCCCCCCcccccCCCCCChhhCcHHHHHHHHc
Confidence 358898677888888889898873 2 45665 4555666777787 4799999988754
No 57
>PRK02487 hypothetical protein; Provisional
Probab=53.45 E-value=48 Score=25.04 Aligned_cols=38 Identities=18% Similarity=0.217 Sum_probs=31.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceE
Q psy1779 153 WQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVT 195 (204)
Q Consensus 153 ~~~~ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~ 195 (204)
..+.+|.++|.+++..+++.+.++ +.++.|.|++ .|..
T Consensus 19 ~~~~l~~~~A~~l~~~a~~~A~~~----g~~v~IaVv~-~G~~ 56 (163)
T PRK02487 19 VFPHFDNDDAWQLGSLLVELARER----GLPIAIDITL-NGQP 56 (163)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHc----CCCEEEEEEE-CCcE
Confidence 357899999999999999988764 4689999995 6643
No 58
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.10 E-value=24 Score=21.69 Aligned_cols=35 Identities=9% Similarity=0.130 Sum_probs=28.2
Q ss_pred hhHHHhhhccCCCCCCHHHHHHHHHHHHHHHHhhc
Q psy1779 143 NMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERD 177 (204)
Q Consensus 143 ~~~~~~Le~~~~~~ms~~ea~~~~~~~l~~~~~~d 177 (204)
+.+-.-+.+++.++||--||+.++.+.|+.-...+
T Consensus 14 Q~AVE~Iq~lMaeGmSsGEAIa~VA~elRe~hk~~ 48 (60)
T COG3140 14 QKAVERIQELMAEGMSSGEAIALVAQELRENHKGE 48 (60)
T ss_pred HHHHHHHHHHHHccccchhHHHHHHHHHHHHhccc
Confidence 45556667777889999999999999998877654
No 59
>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions []. This entry is composed of the type 2 Cache domain.; PDB: 2QHK_A 4EXO_A.
Probab=46.77 E-value=36 Score=22.84 Aligned_cols=42 Identities=14% Similarity=0.105 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEEeccC
Q psy1779 155 PGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATR 202 (204)
Q Consensus 155 ~~ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~~~~ 202 (204)
..+|.+||.+.++..|..... ++.=.+++++.+|+. ..+|.+
T Consensus 33 g~ls~eea~~~a~~~l~~~r~-----~~~gY~fi~d~~g~~-l~hp~~ 74 (95)
T PF08269_consen 33 GKLSEEEAQQQAREALRALRY-----GGDGYFFIYDMDGVV-LAHPSN 74 (95)
T ss_dssp T-----TTHHHHHHHHHH--S-----BTTB--EEE-TTSBE-EEESS-
T ss_pred CCccHHHHHHHHHHHHhcccc-----CCCCeEEEEeCCCeE-EEcCCC
Confidence 469999999999999976643 234478889999976 555654
No 60
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=43.17 E-value=49 Score=25.98 Aligned_cols=40 Identities=10% Similarity=-0.011 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEEec
Q psy1779 161 QLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIA 200 (204)
Q Consensus 161 ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~~ 200 (204)
|+++..++.|......|......+++.||+-+|.-....|
T Consensus 22 ealN~Glq~m~~~Lkqdp~Ale~v~lsIVTF~~~a~~~~p 61 (207)
T COG4245 22 EALNAGLQMMIDTLKQDPYALERVELSIVTFGGPARVIQP 61 (207)
T ss_pred HHHHHHHHHHHHHHHhChhhhheeEEEEEEecCcceEEec
Confidence 4778888889999999999999999999999875555544
No 61
>PF10632 He_PIG_assoc: He_PIG associated, NEW1 domain of bacterial glycohydrolase; InterPro: IPR019599 This domain has been named NEW1 but its actual function is not known. It is found on proteins which are bacterial galactosidases []. The domain is associated with IPR008009 from INTERPRO, a putative Ig-containing domain.
Probab=42.94 E-value=31 Score=18.22 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=17.0
Q ss_pred eEEEEEEeCCCCceEEEEEcCCCC
Q psy1779 105 NPIIAGFYPDSGEVFLSTLDMAGC 128 (204)
Q Consensus 105 ~~lvaG~d~~~~~p~Ly~id~~G~ 128 (204)
+..|-|.-+ +.|+||.|-.+|.
T Consensus 5 ~~~v~G~rP--g~pfl~~IpatG~ 26 (29)
T PF10632_consen 5 SPRVFGARP--GSPFLFTIPATGE 26 (29)
T ss_pred cCcEEcccC--CCcEEEEeeccCc
Confidence 345667777 8899999988884
No 62
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=40.60 E-value=13 Score=21.82 Aligned_cols=32 Identities=16% Similarity=0.246 Sum_probs=21.8
Q ss_pred EEccchhhHHHhhhccC-CCCCCHHHHHHHHHH
Q psy1779 137 AGGSAQNMIMGIGESFW-QPGLSPEQLFEVCSQ 168 (204)
Q Consensus 137 a~G~g~~~~~~~Le~~~-~~~ms~~ea~~~~~~ 168 (204)
+.|+....+...+++.. .++++.++.++.+++
T Consensus 12 ~LGy~~~e~~~av~~~~~~~~~~~e~~ik~aLk 44 (47)
T PF07499_consen 12 SLGYSKAEAQKAVSKLLEKPGMDVEELIKQALK 44 (47)
T ss_dssp HTTS-HHHHHHHHHHHHHSTTS-HHHHHHHHHC
T ss_pred HcCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHh
Confidence 34777777777777766 788998888776654
No 63
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=37.80 E-value=56 Score=20.86 Aligned_cols=29 Identities=7% Similarity=-0.045 Sum_probs=19.3
Q ss_pred HHHHHHHHhhHHhcCCCCCHHHHHHHHHH
Q psy1779 63 EKMTLRTANYVASEQSPISPDTFAAIASW 91 (204)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~la~~l~~ 91 (204)
+.+++....+....|++++.+.+|..+.-
T Consensus 4 ~~i~~a~~~L~~~lgr~Pt~eEiA~~lgi 32 (78)
T PF04539_consen 4 RKIERARRELEQELGREPTDEEIAEELGI 32 (78)
T ss_dssp HHHHHHHHHHHHHHSS--BHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHcc
Confidence 34555555666778999999999997753
No 64
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=35.73 E-value=84 Score=21.95 Aligned_cols=27 Identities=11% Similarity=0.156 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhhHHhcCC-CCCHHHH
Q psy1779 59 MQFAEKMTLRTANYVASEQS-PISPDTF 85 (204)
Q Consensus 59 ~~l~~~~~~~~~~~~~~~~~-~~~~~~l 85 (204)
..++..++.+++.|++++++ +++.+.|
T Consensus 50 ~A~vkmV~sQ~~~YeLdh~~~~pSl~~L 77 (107)
T COG4537 50 EAVVKMVESQAEAYELDHNRLPPSLSDL 77 (107)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCHHHH
Confidence 45677788899999999887 7776655
No 65
>cd04513 Glycosylasparaginase Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoproteins. This enzyme is an amidase located inside lysosomes. Mutation of this gene in humans causes a genetic disorder known as aspartylglycosaminuria (AGU). The glycosylasparaginase precursor undergoes autoproteolysis through an N-O or N-S acyl rearrangement of the peptide bond, which leads to the cleavage of a peptide bond between an Asp and a Thr. This proteolysis step generates an exposed N-terminal catalytic threonine and activates the enzyme.
Probab=35.60 E-value=1.3e+02 Score=24.93 Aligned_cols=57 Identities=12% Similarity=0.221 Sum_probs=38.7
Q ss_pred EEEccchhhHHHhhhc----cCCCCCCHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceE
Q psy1779 136 VAGGSAQNMIMGIGES----FWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVT 195 (204)
Q Consensus 136 ~a~G~g~~~~~~~Le~----~~~~~ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~ 195 (204)
.++|.|...++..+-. .++..++++||.+.+++-+..... ..+...-+..|+++|-.
T Consensus 188 s~TG~GE~iir~~~A~~v~~~m~~G~~~~~A~~~~i~~~~~~~~---~~~~~gg~Iavd~~G~~ 248 (263)
T cd04513 188 AATGDGEEMMRFLPSFQAVEYMRQGMSPKEACLEAIKRIAKHFD---GPDFEGAVVALNKKGEY 248 (263)
T ss_pred EeeccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC---cCCCcEEEEEEcCCCCE
Confidence 4789998877755443 234689999998887776654332 22456678888988753
No 66
>PF03701 UPF0181: Uncharacterised protein family (UPF0181); InterPro: IPR005371 This family contains small proteins of about 50 amino acids of unknown function. The family includes YoaH P76260 from SWISSPROT.
Probab=29.55 E-value=93 Score=18.78 Aligned_cols=34 Identities=9% Similarity=0.147 Sum_probs=26.3
Q ss_pred hhHHHhhhccCCCCCCHHHHHHHHHHHHHHHHhh
Q psy1779 143 NMIMGIGESFWQPGLSPEQLFEVCSQVVIQACER 176 (204)
Q Consensus 143 ~~~~~~Le~~~~~~ms~~ea~~~~~~~l~~~~~~ 176 (204)
+.+-.-+..++..+||--||+.++.+-++.....
T Consensus 14 Q~AvE~Iq~LMaqGmSsgEAI~~VA~~iRe~~~~ 47 (51)
T PF03701_consen 14 QQAVERIQELMAQGMSSGEAIAIVAQEIREEHQG 47 (51)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHh
Confidence 3455556667778999999999999999876543
No 67
>cd04702 ASRGL1_like ASRGL1_like domains, a subfamily of the L-Asparaginase type 2-like enzymes. The wider family includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. The proenzymes undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue. ASRGL1, or asparaginase-like 1, has been cloned from mammalian testis cDNA libraries. It has been identified as a sperm antigen that may induce the production of autoantibodies following obstruction of the male reproductive tract, e.g. vasectomy.
Probab=29.10 E-value=1.7e+02 Score=24.20 Aligned_cols=54 Identities=7% Similarity=0.081 Sum_probs=36.1
Q ss_pred eEEEccchhhHHHhhhc----cCCCCCCHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCce
Q psy1779 135 FVAGGSAQNMIMGIGES----FWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKV 194 (204)
Q Consensus 135 ~~a~G~g~~~~~~~Le~----~~~~~ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~ 194 (204)
..++|.|..+++..+-. .++..++++||.+.+++-+.... +...-+..++++|-
T Consensus 179 ~s~TG~GE~iir~~~a~~v~~~m~~g~s~~eA~~~~i~~~~~~~------~g~gG~Iavd~~G~ 236 (261)
T cd04702 179 VSTTGHGESIMKVVLARLILDHMEQGGSAQEAADKAIEYMTERV------KGTGGAIVLDSSGE 236 (261)
T ss_pred EEeeccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc------CCceEEEEEeCCCC
Confidence 45789998877765543 34568899999888776664332 23446667777774
No 68
>cd04512 Ntn_Asparaginase_2_like Ntn-hydrolase superfamily, L-Asparaginase type 2-like enzymes. This family includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoprotein. Taspase1 catalyzes the cleavage of the Mix Lineage Leukemia (MLL) nuclear protein and transcription factor TFIIA. L-Asparaginase type 2 hydrolyzes L-asparagine to L-aspartate and ammonia. The proenzymes of this family undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue.
Probab=27.45 E-value=1.9e+02 Score=23.69 Aligned_cols=55 Identities=13% Similarity=0.141 Sum_probs=37.5
Q ss_pred eEEEccchhhHHHhhhc----cCCCCCCHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceE
Q psy1779 135 FVAGGSAQNMIMGIGES----FWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVT 195 (204)
Q Consensus 135 ~~a~G~g~~~~~~~Le~----~~~~~ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~ 195 (204)
..++|.|...++..+-. .++..+++++|.+.+++-+... .+...-+..++++|..
T Consensus 176 ~s~TG~GE~iir~~~a~~v~~~~~~g~~~~~A~~~~i~~~~~~------~~~~~G~Ia~d~~G~~ 234 (248)
T cd04512 176 ASTTGHGEAIIRTVLARRVVELMEQGMAAQAAAETAVEELGSL------KGGQGGVIAVDSKGEF 234 (248)
T ss_pred EEeeecHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh------cCCeEEEEEEeCCCCE
Confidence 45789998877765543 2346789999988777666543 1234568888888854
No 69
>PF13983 YsaB: YsaB-like lipoprotein
Probab=26.82 E-value=1.8e+02 Score=18.78 Aligned_cols=57 Identities=14% Similarity=0.124 Sum_probs=35.4
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHhccc------C-CCceeeEEEEEEeCCCCceEEEEEcCCCCee
Q psy1779 73 VASEQSPISPDTFAAIASWELYARKL------T-SPLFINPIIAGFYPDSGEVFLSTLDMAGCET 130 (204)
Q Consensus 73 ~~~~~~~~~~~~la~~l~~~l~~~r~------~-~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~ 130 (204)
+..-.+.+..+.+++.=+...|.-.. . .-|.-+.=+-|+-. .++.+++++||.|-+.
T Consensus 9 kvsp~~sL~ME~lCk~~AA~RYnt~~q~idv~~FeqfQgSYEm~G~T~-r~E~FvCSFD~dGqFL 72 (77)
T PF13983_consen 9 KVSPQRSLNMEQLCKDQAAHRYNTGAQKIDVTGFEQFQGSYEMRGYTA-RKEGFVCSFDADGQFL 72 (77)
T ss_pred ccCcccccCHHHHHHHHHHHhhcCCceeEeecchhhhccceEeecccc-cccceEEeECCCCcEE
Confidence 33444567778888877777765310 0 12333334455554 5678999999999875
No 70
>PF04485 NblA: Phycobilisome degradation protein nblA ; InterPro: IPR007574 In the cyanobacterium Synechococcus species PCC 7942 (P35087 from SWISSPROT), nblA triggers degradation of light-harvesting phycobiliproteins in response to deprivation nutrients including nitrogen, phosphorus and sulphur. The mechanism of nblA function is not known, but it has been hypothesised that nblA may act by disrupting phycobilisome structure, activating a protease or tagging phycobiliproteins for proteolysis. Members of this family have also been identified in the chloroplasts of some red algae.; PDB: 3CS5_D 1OJH_L 2QDO_B 2Q8V_A.
Probab=25.56 E-value=1.2e+02 Score=18.51 Aligned_cols=23 Identities=26% Similarity=0.193 Sum_probs=18.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhc
Q psy1779 155 PGLSPEQLFEVCSQVVIQACERD 177 (204)
Q Consensus 155 ~~ms~~ea~~~~~~~l~~~~~~d 177 (204)
.+||.|+|.+..++.++..+=+|
T Consensus 20 ~~ls~Eqaq~~Lve~~rqmmike 42 (53)
T PF04485_consen 20 QKLSREQAQELLVELYRQMMIKE 42 (53)
T ss_dssp CTS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999998877655
No 71
>PF01458 UPF0051: Uncharacterized protein family (UPF0051); InterPro: IPR000825 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents SufB and SufD proteins that form part of the SufBCD complex in the SUF system. No specific functions have been assigned to these proteins.; GO: 0016226 iron-sulfur cluster assembly; PDB: 1VH4_B 2ZU0_A 4DN7_A.
Probab=25.11 E-value=1.8e+02 Score=22.96 Aligned_cols=48 Identities=15% Similarity=-0.062 Sum_probs=32.5
Q ss_pred ceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHHHHHHHHHH
Q psy1779 117 EVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVV 170 (204)
Q Consensus 117 ~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~~~~~~l 170 (204)
.|.|-.... -. . ..+.+++|.=.+...-+|..+ .++.+||..++.++|
T Consensus 182 ~P~LeI~~~-dV-~-a~H~AtvG~idee~LFYL~SR---Gl~~~eA~~Liv~gF 229 (229)
T PF01458_consen 182 IPELEIDED-DV-K-ASHGATVGQIDEEQLFYLMSR---GLSEEEARKLIVKGF 229 (229)
T ss_dssp EEEEEE-SS-SE-E-EEEEEEEEES-HHHHHHHHCT---T--HHHHHHHHHHHH
T ss_pred EEhHhcccC-Cc-E-EEEeeEeecCCHHHHHHHHHc---CCCHHHHHHHHHhhC
Confidence 466554332 22 2 357788999988888888874 999999999998875
No 72
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=24.94 E-value=2.9e+02 Score=20.45 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=18.4
Q ss_pred EEEEEeCCCCceEEEEEcCCCCee
Q psy1779 107 IIAGFYPDSGEVFLSTLDMAGCET 130 (204)
Q Consensus 107 lvaG~d~~~~~p~Ly~id~~G~~~ 130 (204)
|+.|+|| .-.--+-.+|-.|...
T Consensus 33 lIVGiDP-G~ttgiAildL~G~~l 55 (138)
T PF04312_consen 33 LIVGIDP-GTTTGIAILDLDGELL 55 (138)
T ss_pred EEEEECC-CceeEEEEEecCCcEE
Confidence 6789999 5456688899999876
No 73
>PRK14065 exodeoxyribonuclease VII small subunit; Provisional
Probab=24.65 E-value=1.8e+02 Score=19.57 Aligned_cols=32 Identities=9% Similarity=0.109 Sum_probs=24.4
Q ss_pred hhhHHHhhhccCCCCCCHHHHHHHHHHHHHHH
Q psy1779 142 QNMIMGIGESFWQPGLSPEQLFEVCSQVVIQA 173 (204)
Q Consensus 142 ~~~~~~~Le~~~~~~ms~~ea~~~~~~~l~~~ 173 (204)
-..+..+|+..-.+++|+++.+++=..++...
T Consensus 31 lerakeiLe~LndpeisL~eSvkLYkeG~~lL 62 (86)
T PRK14065 31 VHSLEQAIDRLNDPNLSLKDGMDLYKTAMQEL 62 (86)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 35677889999899999999887766655443
No 74
>PRK02260 S-ribosylhomocysteinase; Provisional
Probab=24.48 E-value=1.9e+02 Score=21.89 Aligned_cols=60 Identities=15% Similarity=0.131 Sum_probs=40.9
Q ss_pred ceEEEEEcCCCCeeeecceEEEc-cchhhHHHhhhccC--------------------CCCCCHHHHHHHHHHHHHHHHh
Q psy1779 117 EVFLSTLDMAGCETRKTDFVAGG-SAQNMIMGIGESFW--------------------QPGLSPEQLFEVCSQVVIQACE 175 (204)
Q Consensus 117 ~p~Ly~id~~G~~~~~~~~~a~G-~g~~~~~~~Le~~~--------------------~~~ms~~ea~~~~~~~l~~~~~ 175 (204)
+-.+..+.|-|... .......| ..++.+...+++.+ ..+.|++.|...+.+.|....+
T Consensus 71 ~~~iI~~sPMGCrT-GFYli~~g~~~~~~i~~l~~~~l~~i~~~~~eVPga~~~~CGny~~hsL~~Ak~~a~~~L~~~~~ 149 (158)
T PRK02260 71 GVEIIDISPMGCRT-GFYLILIGTPDEEDVADALKATLEDVLDDQEEVPGANEYQCGNYKDHSLEGAKEIARKILDQGIS 149 (158)
T ss_pred CceEEEECCCcccc-ccEEEEeCCCCHHHHHHHHHHHHHHHHhhcCCCCCCChhcCCChhhCCHHHHHHHHHHHHHhhcc
Confidence 44577788888877 45556667 45555555555421 1368999999999999977665
Q ss_pred hc
Q psy1779 176 RD 177 (204)
Q Consensus 176 ~d 177 (204)
.+
T Consensus 150 ~~ 151 (158)
T PRK02260 150 VN 151 (158)
T ss_pred cC
Confidence 44
No 75
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=21.71 E-value=1.8e+02 Score=17.33 Aligned_cols=31 Identities=13% Similarity=0.047 Sum_probs=20.5
Q ss_pred HHHhhhccCCCCCCHHHHHHHHHHHHHHHHh
Q psy1779 145 IMGIGESFWQPGLSPEQLFEVCSQVVIQACE 175 (204)
Q Consensus 145 ~~~~Le~~~~~~ms~~ea~~~~~~~l~~~~~ 175 (204)
+..++++.-++++|+++++.+-.+++.....
T Consensus 8 Le~Iv~~Le~~~~sLdes~~lyeeg~~l~~~ 38 (53)
T PF02609_consen 8 LEEIVEKLESGELSLDESLKLYEEGMELIKK 38 (53)
T ss_dssp HHHHHHHHHTT-S-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 3445555556899999999998888765543
No 76
>KOG3652|consensus
Probab=21.59 E-value=1.9e+02 Score=27.34 Aligned_cols=109 Identities=10% Similarity=0.145 Sum_probs=63.1
Q ss_pred EecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCe
Q psy1779 50 INPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCE 129 (204)
Q Consensus 50 ~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~ 129 (204)
.-+|..+-+-.|++.+- ....|+++....|.++...+++--.. .-|.|-.+++.+=- ++|-||+.|..|--
T Consensus 191 ~eAGRAaAc~sLcRIfc------SKksgEeIl~a~LS~FY~ll~Q~Lq~-kdyvchpmLasl~l--n~p~LFccdLkGId 261 (1215)
T KOG3652|consen 191 VEAGRAAACASLCRIFC------SKKSGEEILNAQLSNFYALLFQCLQE-KDYVCHPMLASLFL--NGPNLFCCDLKGID 261 (1215)
T ss_pred hhhhHHHHHHHHHHhhh------cccCcccccHHHHHHHHHHHHHHHhh-cccccchhheeeee--cCCceeeecCCchh
Confidence 34666666666665433 23468899999998888776543221 33455555555543 67899999999964
Q ss_pred eeecceEEEccchhhHHHh------hhccCCCCCCHHHHHHHHHHHHHHHH
Q psy1779 130 TRKTDFVAGGSAQNMIMGI------GESFWQPGLSPEQLFEVCSQVVIQAC 174 (204)
Q Consensus 130 ~~~~~~~a~G~g~~~~~~~------Le~~~~~~ms~~ea~~~~~~~l~~~~ 174 (204)
. -.+|.. ++..+ +-+.++.-.+..|.....+.+|...+
T Consensus 262 ~-llP~Fi------~ALd~il~dre~~rkfkS~~n~tElRRa~in~LlSli 305 (1215)
T KOG3652|consen 262 S-LLPHFI------FALDIILIDREKLRKFKSISNETELRRACINALLSLI 305 (1215)
T ss_pred H-hhHHHH------HHHHhhhccHHHhhhccccCCHHHHHHHHHHHHHHhc
Confidence 4 133322 12111 11123333446777777777776554
No 77
>KOG0083|consensus
Probab=21.49 E-value=1e+02 Score=22.87 Aligned_cols=146 Identities=13% Similarity=0.023 Sum_probs=72.8
Q ss_pred CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcE----EEEecCChHHHHHHHHH----HHHHHHhhHH
Q psy1779 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHL----YLINPGLCADGMQFAEK----MTLRTANYVA 74 (204)
Q Consensus 3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i----~~~~sG~~~D~~~l~~~----~~~~~~~~~~ 74 (204)
+-.|.||+=|++|||..|+..--.+.|. ..-+|+..+++.- ++-.+|-- -++.+... .......|..
T Consensus 6 s~~gktcllir~kdgafl~~~fistvgi----d~rnkli~~~~~kvklqiwdtagqe-rfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 6 SCTGKTCLLIRFKDGAFLAGNFISTVGI----DFRNKLIDMDDKKVKLQIWDTAGQE-RFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccCceEEEEEeccCceecCceeeeeee----ccccceeccCCcEEEEEEeeccchH-HHhhhhHhhhcccceeeeeeec
Confidence 3468899999999999998654333332 2346777666531 12233321 11111111 0001111222
Q ss_pred hcCCCCCHHHHHHHHHHHH-HhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccch----hhHHHhh
Q psy1779 75 SEQSPISPDTFAAIASWEL-YARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQ----NMIMGIG 149 (204)
Q Consensus 75 ~~~~~~~~~~la~~l~~~l-~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~----~~~~~~L 149 (204)
. ..-+.+..-.|++++- |.+. .|.+.+.|--- +..|. ..+-.-.|. .+-.+++
T Consensus 81 a--nkasfdn~~~wlsei~ey~k~-----~v~l~llgnk~-d~a~e--------------r~v~~ddg~kla~~y~ipfm 138 (192)
T KOG0083|consen 81 A--NKASFDNCQAWLSEIHEYAKE-----AVALMLLGNKC-DLAHE--------------RAVKRDDGEKLAEAYGIPFM 138 (192)
T ss_pred c--cchhHHHHHHHHHHHHHHHHh-----hHhHhhhcccc-ccchh--------------hccccchHHHHHHHHCCCce
Confidence 1 2346777888888764 3321 23334444322 11110 111111121 2334667
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHHHh
Q psy1779 150 ESFWQPGLSPEQLFEVCSQVVIQACE 175 (204)
Q Consensus 150 e~~~~~~ms~~ea~~~~~~~l~~~~~ 175 (204)
|..-+..++.+-|+..+.+-++....
T Consensus 139 etsaktg~nvd~af~~ia~~l~k~~~ 164 (192)
T KOG0083|consen 139 ETSAKTGFNVDLAFLAIAEELKKLKM 164 (192)
T ss_pred eccccccccHhHHHHHHHHHHHHhcc
Confidence 87778888888888777766665543
No 78
>PF00538 Linker_histone: linker histone H1 and H5 family; InterPro: IPR005818 Histone proteins have central roles in both chromatin organisation (as structural units of the nucleosome) and gene regulation (as dynamic components that have a direct impact on DNA transcription and replication). Eukaryotic DNA wraps around a histone octamer to form a nucleosome, the first order of compaction of eukaryotic chromatin. The core histone octamer is composed of a central H3-H4 tetramer and two flanking H2A-H2B dimers. Each of the core histone contains a common structural motif, called the histone fold, which facilitates the interactions between the individual core histones. In addition to the core histones, there is a "linker histone" called H1 (or H5 in avian species). The linker histones present in all multicellular eukaryotes are the most divergent group of histones, with numerous cell type- and stage-specific variant. Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures. Histone H5 performs the same function as histone H1, and replaces H1 in certain cells. The structure of GH5, the globular domain of the linker histone H5 is known [, ]. The fold is similar to the DNA-binding domain of the catabolite gene activator protein, CAP, thus providing a possible model for the binding of GH5 to DNA. The linker histones, which do not contain the histone fold motif, are critical to the higher-order compaction of chromatin, because they bind to internucleosomal DNA and facilitate interactions between individual nucleosomes. In addition, H1 variants have been shown to be involved in the regulation of developmental genes. A common feature of this protein family is a tripartite structure in which a globular (H15) domain of about 80 amino acids is flanked by two less structured N- and C-terminal tails. The H15 domain is also characterised by high sequence homology among the family of linker histones. The highly conserved H15 domain is essential for the binding of H1 or H5 to the nucleosome. It consists of a three helix bundle (I-III), with a beta-hairpin at the C terminus. There is also a short three-residue stretch between helices I and II that is in the beta-strand conformation. Together with the C-terminal beta-hairpin, this strand forms the third strand of an antiparallel beta-sheet [, , , ]. Proteins known to contain a H15 domain are: - Eukaryotic histone H1. The histones H1 constitute a family with many variants, differing in their affinity for chromatin. Several variants are simultaneously present in a single cell. For example, the nucleated erythrocytes of birds contain both H1 and H5, the latter being an extreme variant of H1. - Eukaryotic MHYST family of histone acetyltransferase. Histone acetyltransferases transfer an acetyl group from acetyl-CoA to the epsylon- amino group of lysine within the basic NH2-termini of histones, which bind the acidic phosphates of DNA []. This entry represents the H15 domain.; GO: 0003677 DNA binding, 0006334 nucleosome assembly, 0000786 nucleosome, 0005634 nucleus; PDB: 2LSO_A 2RQP_A 1UHM_A 1UST_A 1GHC_A 1HST_A 1YQA_A 1USS_A.
Probab=21.29 E-value=1.5e+02 Score=19.06 Aligned_cols=39 Identities=15% Similarity=0.223 Sum_probs=29.9
Q ss_pred ccchhhHHHhhhccCCCCCCHHHHHHHHHHHHHHHHhhc
Q psy1779 139 GSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERD 177 (204)
Q Consensus 139 G~g~~~~~~~Le~~~~~~ms~~ea~~~~~~~l~~~~~~d 177 (204)
|+-.+.+..+|+..|.-+.+....-.....+|+.+.+..
T Consensus 21 GsS~~aI~kyI~~~y~~~~~~~~~~~~l~~aLk~~v~~G 59 (77)
T PF00538_consen 21 GSSLQAIKKYIKAKYKVDLNPANFKSRLKRALKRGVEKG 59 (77)
T ss_dssp SEEHHHHHHHHHHHSSCCCCHTTHHHHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHhcCcCCChHHHHHHHHHHHHHHHHCC
Confidence 556678999999998767776567777888888887654
No 79
>PF01592 NifU_N: NifU-like N terminal domain; InterPro: IPR002871 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the N-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal and a C-terminal domain (IPR001075 from INTERPRO) []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 3LVL_A 4EB5_C 4EB7_C 1WFZ_A 2Z7E_C 2AZH_A 1XJS_A 1Q48_A 1R9P_A 2KQK_A ....
Probab=21.17 E-value=2.1e+02 Score=20.38 Aligned_cols=54 Identities=15% Similarity=0.105 Sum_probs=35.4
Q ss_pred EEEcCC-CCeeeecceEEEccchhhHHHhhhccCCCCCCHHHHHHHHHHHHHHHHh
Q psy1779 121 STLDMA-GCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACE 175 (204)
Q Consensus 121 y~id~~-G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~~~~~~l~~~~~ 175 (204)
..+|.+ |.+. ...|.+.|..--.+-.-+=..+-.+.|++||.++..+-+...+.
T Consensus 42 l~i~~~~~~I~-d~~f~~~GC~~~~Asas~~~~~i~gk~l~ea~~i~~~~i~~~l~ 96 (126)
T PF01592_consen 42 LKIDDDGGRIK-DAKFQGFGCAISIASASMMCELIKGKTLEEALKITAEDIEEALG 96 (126)
T ss_dssp EEESSSTSBEE-EEEEEEESSHHHHHHHHHHHHHHTTSBHHHHHCHHHHHHHHHHT
T ss_pred EEEecCCCeEE-EEEEEeecChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 456877 6666 68898888875444433333334578899998877666655554
No 80
>PF14804 Jag_N: Jag N-terminus; PDB: 3GKU_B.
Probab=20.95 E-value=1.1e+02 Score=18.49 Aligned_cols=28 Identities=14% Similarity=-0.032 Sum_probs=18.8
Q ss_pred CCHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcC
Q psy1779 157 LSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEP 191 (204)
Q Consensus 157 ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~ 191 (204)
-|+|||++.+..-|..- -+.+++-|+.+
T Consensus 5 kt~eeAi~~A~~~l~~~-------~~~~~~eVi~~ 32 (52)
T PF14804_consen 5 KTVEEAIEKALKELGVP-------REELEYEVIEE 32 (52)
T ss_dssp SSHHHHHHHHHHHTT---------GGGEEEEEEE-
T ss_pred CCHHHHHHHHHHHhCCC-------hHHEEEEEEEc
Confidence 47889988877776422 34788888886
No 81
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=20.87 E-value=56 Score=22.89 Aligned_cols=15 Identities=13% Similarity=-0.173 Sum_probs=13.0
Q ss_pred CceEEEEEcCCCCee
Q psy1779 116 GEVFLSTLDMAGCET 130 (204)
Q Consensus 116 ~~p~Ly~id~~G~~~ 130 (204)
++|+||++||.+...
T Consensus 36 d~PrL~Yvdp~~~~~ 50 (104)
T PF14593_consen 36 DGPRLFYVDPKKMVL 50 (104)
T ss_dssp TTTEEEEEETTTTEE
T ss_pred cCCEEEEEECCCCeE
Confidence 579999999998765
No 82
>PRK05114 hypothetical protein; Provisional
Probab=20.55 E-value=1.6e+02 Score=18.26 Aligned_cols=34 Identities=6% Similarity=0.087 Sum_probs=26.6
Q ss_pred hhHHHhhhccCCCCCCHHHHHHHHHHHHHHHHhh
Q psy1779 143 NMIMGIGESFWQPGLSPEQLFEVCSQVVIQACER 176 (204)
Q Consensus 143 ~~~~~~Le~~~~~~ms~~ea~~~~~~~l~~~~~~ 176 (204)
+.+-.-+..++..+||--||+.++.+-++.....
T Consensus 14 Q~AVErIq~LMaqGmSsgEAI~~VA~eiRe~~~~ 47 (59)
T PRK05114 14 QKAVERIQELMAQGMSSGEAIALVAEELRANHQG 47 (59)
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhc
Confidence 3455556667778999999999999999877654
Done!