Query psy1779
Match_columns 204
No_of_seqs 123 out of 1098
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 23:05:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1779.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1779hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iru_M 20S proteasome; cell cy 100.0 4.4E-52 1.5E-56 330.0 27.4 199 3-204 6-213 (213)
2 1iru_J 20S proteasome; cell cy 100.0 5.5E-52 1.9E-56 327.6 27.2 201 3-204 5-205 (205)
3 1ryp_M 20S proteasome; multica 100.0 9E-52 3.1E-56 330.1 26.9 199 3-204 6-222 (222)
4 1ryp_J 20S proteasome; multica 100.0 2.4E-51 8.2E-56 323.7 26.9 200 3-204 5-204 (204)
5 3h4p_a Proteasome subunit beta 100.0 2.6E-49 8.9E-54 315.3 24.4 188 6-196 1-189 (219)
6 1ryp_K 20S proteasome; multica 100.0 8.3E-49 2.8E-53 307.8 25.3 192 6-198 1-193 (198)
7 1j2q_H Proteasome beta subunit 100.0 1.6E-48 5.5E-53 307.1 26.1 186 7-196 1-187 (202)
8 1iru_H 20S proteasome; cell cy 100.0 2.6E-48 9.1E-53 306.5 26.1 192 7-202 1-192 (205)
9 1yar_H Proteasome beta subunit 100.0 1.7E-48 5.8E-53 310.2 25.2 189 3-196 5-194 (217)
10 1ryp_H 20S proteasome; multica 100.0 4.2E-48 1.4E-52 305.4 26.3 192 3-199 6-197 (205)
11 1iru_K 20S proteasome; cell cy 100.0 2.7E-48 9.4E-53 305.5 23.8 191 6-198 1-192 (201)
12 1ryp_N 20S proteasome; multica 100.0 3E-48 1E-52 311.8 23.5 193 3-197 5-209 (233)
13 1iru_N 20S proteasome; cell cy 100.0 3.2E-48 1.1E-52 308.9 23.4 193 3-198 5-201 (219)
14 1iru_L 20S proteasome; cell cy 100.0 1.5E-47 5E-52 302.0 26.7 186 7-196 1-186 (204)
15 3nzj_K Proteasome component PR 100.0 8.4E-48 2.9E-52 316.9 26.3 193 2-197 71-263 (287)
16 3unf_H Proteasome subunit beta 100.0 1.5E-47 5.1E-52 307.6 26.3 187 7-198 1-187 (234)
17 1ryp_L 20S proteasome; multica 100.0 2E-47 6.9E-52 302.9 26.2 187 7-196 1-187 (212)
18 3unf_N Proteasome subunit beta 100.0 2.2E-47 7.4E-52 299.9 25.3 190 7-201 1-190 (199)
19 1ryp_A 20S proteasome; multica 100.0 5.6E-48 1.9E-52 312.1 22.5 192 3-200 26-228 (243)
20 3nzj_H Proteasome component PU 100.0 3.1E-47 1.1E-51 310.0 26.4 186 3-193 26-211 (261)
21 1ryp_I 20S proteasome; multica 100.0 7.4E-47 2.5E-51 301.7 26.3 186 7-197 1-187 (222)
22 1iru_A 20S proteasome; cell cy 100.0 3.7E-47 1.3E-51 307.8 24.8 193 5-201 35-232 (246)
23 1g0u_M Proteasome component PR 100.0 3.4E-47 1.2E-51 311.1 23.2 192 4-197 39-242 (266)
24 1ryp_C 20S proteasome; multica 100.0 7.8E-47 2.7E-51 305.5 23.6 195 4-200 29-230 (244)
25 1iru_B 20S proteasome; cell cy 100.0 8.6E-47 3E-51 303.3 22.0 187 4-195 29-218 (233)
26 1iru_C 20S proteasome; cell cy 100.0 1.4E-46 4.8E-51 306.8 23.3 195 4-200 29-229 (261)
27 1iru_I 20S proteasome; cell cy 100.0 3.6E-46 1.2E-50 299.8 25.2 185 7-196 1-185 (234)
28 1yar_A Proteasome alpha subuni 100.0 2E-46 6.7E-51 301.3 23.4 191 3-199 31-224 (233)
29 1ryp_E 20S proteasome; multica 100.0 2.5E-46 8.4E-51 302.3 22.9 193 3-200 23-224 (242)
30 1iru_E 20S proteasome; cell cy 100.0 4E-46 1.4E-50 300.8 22.7 192 3-200 31-230 (241)
31 1ryp_D 20S proteasome; multica 100.0 1.4E-45 4.9E-50 297.6 25.3 192 3-200 25-223 (241)
32 1iru_G 20S proteasome; cell cy 100.0 5.8E-46 2E-50 302.0 21.5 186 4-192 31-219 (254)
33 1ryp_G 20S proteasome; multica 100.0 1.5E-45 5.2E-50 297.9 23.2 190 4-197 28-226 (244)
34 3h4p_A Proteasome subunit alph 100.0 6.7E-46 2.3E-50 302.9 20.9 192 4-201 36-230 (264)
35 1q5q_H Proteasome beta-type su 100.0 4.2E-45 1.4E-49 293.9 25.0 188 7-196 1-204 (235)
36 1q5r_H Proteasome beta-type su 100.0 2.9E-45 1E-49 302.7 23.8 192 3-196 62-269 (294)
37 1iru_D 20S proteasome; cell cy 100.0 2.5E-45 8.7E-50 297.3 20.8 184 4-193 27-215 (248)
38 3nzj_F Proteasome component C1 100.0 4E-45 1.4E-49 301.1 22.2 193 4-200 32-232 (288)
39 2jay_A Proteasome; hydrolase; 100.0 3.3E-45 1.1E-49 302.1 20.6 195 1-196 52-261 (291)
40 1ryp_F 20S proteasome; multica 100.0 6.8E-45 2.3E-49 292.3 21.6 183 4-193 29-219 (233)
41 1j2p_A Alpha-ring, proteasome 100.0 2.3E-44 7.8E-49 291.4 23.5 186 4-195 32-222 (246)
42 3mi0_A Proteasome subunit alph 100.0 2.2E-44 7.6E-49 291.1 23.1 187 4-200 25-226 (248)
43 1iru_F 20S proteasome; cell cy 100.0 1.2E-44 4.1E-49 295.6 20.8 184 4-193 30-219 (263)
44 1ryp_B 20S proteasome; multica 100.0 4.5E-44 1.5E-48 290.3 23.4 185 4-193 29-218 (250)
45 1q5q_A Proteasome alpha-type s 100.0 2.4E-43 8.2E-48 287.2 21.2 180 4-193 25-215 (259)
46 2z3b_A ATP-dependent protease 100.0 3.6E-39 1.2E-43 249.5 18.9 173 3-190 2-180 (180)
47 1g3k_A ATP-dependent protease 100.0 3.3E-38 1.1E-42 242.8 19.0 168 7-190 1-173 (174)
48 1m4y_A ATP-dependent protease 100.0 2.6E-38 9E-43 242.7 17.8 167 7-189 1-171 (171)
49 3fpw_A HBPS, extracellular HAE 58.6 27 0.00094 26.2 6.3 39 154-196 62-100 (192)
50 2a2l_A Unknown; structural gen 53.4 21 0.00072 25.4 4.7 38 155-196 10-47 (145)
51 1xhj_A Nitrogen fixation prote 41.1 71 0.0024 20.7 6.2 43 157-203 6-48 (88)
52 4eo3_A Bacterioferritin comigr 38.7 6.6 0.00022 31.9 0.0 36 117-152 102-137 (322)
53 3ub6_A Chemoreceptor TLPB; hom 30.8 75 0.0026 23.1 4.8 51 145-201 36-86 (181)
54 1apy_B Aspartylglucosaminidase 30.1 1.1E+02 0.0037 21.7 5.3 55 135-194 49-107 (141)
55 3jtz_A Integrase; four strande 24.1 86 0.0029 20.1 3.6 50 120-174 27-76 (88)
56 2q8v_A NBLA protein; phycobili 24.0 84 0.0029 19.1 3.2 23 155-177 28-50 (63)
57 1ojh_A NBLA; degradation prote 23.8 84 0.0029 19.2 3.2 23 155-177 23-45 (65)
58 3fau_A NEDD4-binding protein 2 23.7 1.3E+02 0.0043 18.7 4.3 39 156-194 7-45 (82)
59 1p4k_A N(4)-(beta-N-acetylgluc 22.7 1.7E+02 0.0058 23.4 5.8 60 135-194 200-265 (295)
60 2fgy_A Carboxysome shell polyp 20.2 1.8E+02 0.0063 25.1 5.6 65 101-175 313-377 (542)
No 1
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=4.4e-52 Score=329.96 Aligned_cols=199 Identities=24% Similarity=0.361 Sum_probs=192.2
Q ss_pred CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP 82 (204)
Q Consensus 3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 82 (204)
.++|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|++|+++++||..+|++.|.++++.+++.|++++++++++
T Consensus 6 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 85 (213)
T 1iru_M 6 VFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTT 85 (213)
T ss_dssp CCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred cCCCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCCCCCH
Confidence 46899999999999999999999999998888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhcc---------C
Q psy1779 83 DTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESF---------W 153 (204)
Q Consensus 83 ~~la~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~---------~ 153 (204)
+.+++++++++|++|. |||++++||||||+ +++|+||.+||+|++. +++++|+|+|+++++++||+. |
T Consensus 86 ~~la~~l~~~~y~~r~-~P~~v~~lvaG~D~-~g~p~Ly~id~~G~~~-~~~~~aiGsg~~~a~~~Le~~~~~~~~~~~~ 162 (213)
T 1iru_M 86 GAIAAMLSTILYSRRF-FPYYVYNIIGGLDE-EGKGAVYSFDPVGSYQ-RDSFKAGGSASAMLQPLLDNQVGFKNMQNVE 162 (213)
T ss_dssp HHHHHHHHHHHHHTTT-SCCCEEEEEEEECT-TSCEEEEEECTTSCEE-EESEEEEETTHHHHHHHHHHHTTCCSCSSCC
T ss_pred HHHHHHHHHHHHhhCC-CCceEEEEEEEEcC-CCCEEEEEECCCCCEE-ECCEEEEeeCHHHHHHHHhhccccccccccC
Confidence 9999999999999885 99999999999997 6779999999999998 699999999999999999999 8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEEeccCCC
Q psy1779 154 QPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204 (204)
Q Consensus 154 ~~~ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~~~~~~ 204 (204)
+++||++||++++.+||..+.++|..++++++|++|+++|++.+.+++|+|
T Consensus 163 ~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~~r~d 213 (213)
T 1iru_M 163 HVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREETVSLRKD 213 (213)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTEEEEEEEECCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCccCCcEEEEEEcCCCeEEEEeecCCC
Confidence 899999999999999999999999999999999999999999999999998
No 2
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=5.5e-52 Score=327.57 Aligned_cols=201 Identities=34% Similarity=0.634 Sum_probs=191.7
Q ss_pred CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP 82 (204)
Q Consensus 3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 82 (204)
.++|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|++|++++++|..+|++.|.++++.+++.|++++++++++
T Consensus 5 ~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 84 (205)
T 1iru_J 5 SYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKP 84 (205)
T ss_dssp TSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCCH
T ss_pred cCCCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCCCCCH
Confidence 57899999999999999999999999999888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHH
Q psy1779 83 DTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQL 162 (204)
Q Consensus 83 ~~la~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea 162 (204)
+.+++++++++|++|. .||++++|+||||+.+++|+||++||+|++.+..+|+|+|+|+++++++||+.|+++||++||
T Consensus 85 ~~la~~l~~~~y~~r~-~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea 163 (205)
T 1iru_J 85 YTLMSMVANLLYEKRF-GPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHL 163 (205)
T ss_dssp HHHHHHHHHHHHTTTT-SCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCSSCCHHHH
T ss_pred HHHHHHHHHHHHHhcC-CCceEEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhcccCCCCCHHHH
Confidence 9999999999999886 799999999999942478999999999998634577999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEEeccCCC
Q psy1779 163 FEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204 (204)
Q Consensus 163 ~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~~~~~~ 204 (204)
++++.+||..+.++|..++++++|++|+++|++++.+++|+|
T Consensus 164 ~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~~r~d 205 (205)
T 1iru_J 164 FETISQAMLNAVDRDAVSGMGVIVHIIEKDKITTRTLKARMD 205 (205)
T ss_dssp HHHHHHHHHHHGGGBTTSCSCEEEEEEESSBEEEEEBCCCCC
T ss_pred HHHHHHHHHHHHHhCcccCCceEEEEEcCCCEEEEEeecCCC
Confidence 999999999999999999999999999999999999999998
No 3
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=9e-52 Score=330.15 Aligned_cols=199 Identities=23% Similarity=0.327 Sum_probs=192.5
Q ss_pred CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcC-CCCC
Q psy1779 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQ-SPIS 81 (204)
Q Consensus 3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~~~ 81 (204)
.++|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|++|++++++|..+|++.|.++++.+++.|+++++ ++++
T Consensus 6 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~ 85 (222)
T 1ryp_M 6 GDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKLS 85 (222)
T ss_dssp CCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred ccCCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 568999999999999999999999999988899999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhcc---------
Q psy1779 82 PDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESF--------- 152 (204)
Q Consensus 82 ~~~la~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~--------- 152 (204)
++.+++++++++|++|. +||++++||||||+ +++|+||++||+|++. +++++|+|+|+++++++||+.
T Consensus 86 v~~la~~l~~~ly~~r~-~P~~v~~ivaG~D~-~g~p~Ly~~dp~G~~~-~~~~~a~Gsg~~~a~~~Le~~~~~~~~~~~ 162 (222)
T 1ryp_M 86 INSAARNIQHLLYGKRF-FPYYVHTIIAGLDE-DGKGAVYSFDPVGSYE-REQCRAGGAAASLIMPFLDNQVNFKNQYEP 162 (222)
T ss_dssp HHHHHHHHHHHHHTTTT-SCCCEEEEEEEECT-TSCEEEEEECTTSCEE-EESEEEEETTHHHHHHHHHHHTSCTTCBCT
T ss_pred HHHHHHHHHHHHHhcCC-CCceEEEEEEEEcC-CCCeEEEEECCCcCEE-ecCEEEEcCcHHHHHHHHhccccccccccc
Confidence 99999999999999886 89999999999997 6779999999999998 699999999999999999998
Q ss_pred --------CCCCCCHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEEeccCCC
Q psy1779 153 --------WQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204 (204)
Q Consensus 153 --------~~~~ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~~~~~~ 204 (204)
|+++||+|||++++++||..+.+||..++++++|++|+++|++++.+++|+|
T Consensus 163 ~~~~~~~~~~~~~s~eeA~~la~~al~~a~~rd~~sg~~i~v~vi~~~g~~~~~~~~r~d 222 (222)
T 1ryp_M 163 GTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDGVRKEFYELKRD 222 (222)
T ss_dssp TSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEEEEECCCC
T ss_pred ccccccccCCCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEcCCCeEEEEeeccCC
Confidence 8899999999999999999999999999999999999999999999999998
No 4
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=2.4e-51 Score=323.70 Aligned_cols=200 Identities=36% Similarity=0.698 Sum_probs=190.7
Q ss_pred CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP 82 (204)
Q Consensus 3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 82 (204)
.++|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|+ |++++++|..+|++.|.++++.+++.|++++++++++
T Consensus 5 ~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 83 (204)
T 1ryp_J 5 SINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIEP 83 (204)
T ss_dssp GSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred CCCCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCCCCH
Confidence 468999999999999999999999999998888999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHH
Q psy1779 83 DTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQL 162 (204)
Q Consensus 83 ~~la~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea 162 (204)
+.+++++++++|++|. .||++++|+||||+.+++|+||.+||+|++.+..+|+|+|+|+++++++||+.|+++||++||
T Consensus 84 ~~la~~l~~~~y~~~~-~P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea 162 (204)
T 1ryp_J 84 ETFTQLVSSSLYERRF-GPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDL 162 (204)
T ss_dssp HHHHHHHHHHHHTTTT-SCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCCSSCCHHHH
T ss_pred HHHHHHHHHHHHHhcC-CCceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhcCCCcCHHHH
Confidence 9999999999999887 699999999999952478999999999998644577999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEEeccCCC
Q psy1779 163 FEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204 (204)
Q Consensus 163 ~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~~~~~~ 204 (204)
++++.+||..+.++|..++++++|++|+++|++++.+++|+|
T Consensus 163 ~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~~r~d 204 (204)
T 1ryp_J 163 FETISQALLNAADRDALSGWGAVVYIIKKDEVVKRYLKMRQD 204 (204)
T ss_dssp HHHHHHHHHHHHTTBTTSCSCEEEEEEESSCEEEEEECCCCC
T ss_pred HHHHHHHHHHHHHhCcccCCcEEEEEEcCCCEEEEEeecCCC
Confidence 999999999999999999999999999999999999999998
No 5
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=2.6e-49 Score=315.26 Aligned_cols=188 Identities=21% Similarity=0.266 Sum_probs=181.0
Q ss_pred CceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHH
Q psy1779 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTF 85 (204)
Q Consensus 6 g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 85 (204)
|+|+|||+++||||||+|+|.+.|.++..++.+|||+|++|++++++|..+|++.|.++++.+++.|+++++++++++.+
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLAC 80 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHH
T ss_pred CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecc-eEEEccchhhHHHhhhccCCCCCCHHHHHH
Q psy1779 86 AAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTD-FVAGGSAQNMIMGIGESFWQPGLSPEQLFE 164 (204)
Q Consensus 86 a~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~-~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~ 164 (204)
++++++++|++|. +||++++||||||+ +++|+||++||+|++. +++ ++|+|+|+++++++||+.|+++||++||++
T Consensus 81 a~~l~~~~~~~~~-~P~~v~~lvaG~D~-~~gp~Ly~idp~G~~~-~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~ 157 (219)
T 3h4p_a 81 ATLLSNILHSSRM-FPFLTQIIIGGYDL-LEGAKLFSLDPLGGMN-EEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIK 157 (219)
T ss_dssp HHHHHHHHHHTTT-TTCCCCCEEEEEET-TTEEEEEEECSSCCEE-ECSSEEEESTTHHHHHHHHHTSCCTTCCHHHHHH
T ss_pred HHHHHHHHHHhcC-CCceEEEEEEEEeC-CCCcEEEEECCCCceE-ecCCEEEEcCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence 9999999998876 89999999999997 6899999999999999 688 999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCCEEEEEEcCCceEE
Q psy1779 165 VCSQVVIQACERDTKSGWGATVYVVEPDKVTI 196 (204)
Q Consensus 165 ~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~ 196 (204)
++.+||..+.++|..++++++|++|+++|++.
T Consensus 158 la~~al~~~~~rd~~sg~~i~v~vi~~~g~~~ 189 (219)
T 3h4p_a 158 LALNALKSAMERDTFSGNGISLAVITKDGVKI 189 (219)
T ss_dssp HHHHHHHHHHTSCSSCCSCCCEEEEETTEEEE
T ss_pred HHHHHHHHHHhhcCCCCCcEEEEEEeCCCeEE
Confidence 99999999999999999999999999998654
No 6
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=8.3e-49 Score=307.79 Aligned_cols=192 Identities=19% Similarity=0.289 Sum_probs=181.1
Q ss_pred CceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHH
Q psy1779 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTF 85 (204)
Q Consensus 6 g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 85 (204)
|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|++|++++++|..+|++.|.++++.+++.|+++++++++++.+
T Consensus 1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (198)
T 1ryp_K 1 MDIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAV 80 (198)
T ss_dssp CCCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHH
T ss_pred CceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 68999999999999999999999999888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc-ccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHHHH
Q psy1779 86 AAIASWELYAR-KLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFE 164 (204)
Q Consensus 86 a~~l~~~l~~~-r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~ 164 (204)
++++++++|.+ +.++||++++|+||||+++++|+||.+||+|++. +++++|+|+|+++++++||+.|+++||++||++
T Consensus 81 a~~l~~~l~~~~~~r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~-~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~ 159 (198)
T 1ryp_K 81 SSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTKV-ELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLD 159 (198)
T ss_dssp HHHHHHHHHHHTTSSSCCCEEEEEEEEETTTTEEEEEEECTTCCEE-ECSEEECTTHHHHHHHHHHHHCCTTCCHHHHHH
T ss_pred HHHHHHHHHHhcccCCCceEEEEEEEEeCCCCCcEEEEECCCCCEE-ECCEEEEcccHHHHHHHHHhhcCCCCCHHHHHH
Confidence 99999999886 3324999999999999523789999999999998 699999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCCEEEEEEcCCceEEEE
Q psy1779 165 VCSQVVIQACERDTKSGWGATVYVVEPDKVTIRK 198 (204)
Q Consensus 165 ~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~ 198 (204)
++.+||..+.++|..++++++|++|+++|++...
T Consensus 160 l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~ 193 (198)
T 1ryp_K 160 LLKLCVQELEKRMPMDFKGVIVKIVDKDGIRQVD 193 (198)
T ss_dssp HHHHHHHHHHHHCSBCCCCEEEEEEETTEEEEEC
T ss_pred HHHHHHHHHHHhCccCCCceEEEEEcCCCEEEec
Confidence 9999999999999999999999999999977543
No 7
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=1.6e-48 Score=307.08 Aligned_cols=186 Identities=18% Similarity=0.285 Sum_probs=179.3
Q ss_pred ceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Q psy1779 7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFA 86 (204)
Q Consensus 7 ~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 86 (204)
||+|||+++||||||+|+|.+.|.++..++.+|||+|++|++++++|..+|++.|.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA 80 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecc-eEEEccchhhHHHhhhccCCCCCCHHHHHHH
Q psy1779 87 AIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTD-FVAGGSAQNMIMGIGESFWQPGLSPEQLFEV 165 (204)
Q Consensus 87 ~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~-~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~~ 165 (204)
+++++++|++|. |||++++|+||||+ ++|+||++||+|++. +++ ++|+|+|+++++++||+.|+++||++||+++
T Consensus 81 ~~l~~~~~~~r~-rp~~~~~lvaG~D~--~gp~Ly~id~~G~~~-~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~l 156 (202)
T 1j2q_H 81 TLTSNLLNSYRY-FPYLVQLLIGGIDS--EGKSIYSIDPIGGAI-EEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVEL 156 (202)
T ss_dssp HHHHHHHHHTTT-SCCCEEEEEEEEET--TEEEEEEECTTCCEE-EESSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred HHHHHHHHhhCC-CCceEEEEEEEEeC--CCCEEEEECCCCCee-ecCCEEEEcCCHHHHHHHHHhhcCCCcCHHHHHHH
Confidence 999999999876 89999999999996 789999999999999 689 9999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccCCCEEEEEEcCCceEE
Q psy1779 166 CSQVVIQACERDTKSGWGATVYVVEPDKVTI 196 (204)
Q Consensus 166 ~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~ 196 (204)
+.+||..+.++|..++++++|++|+++|++.
T Consensus 157 a~~al~~~~~~d~~s~~~i~v~vi~~~g~~~ 187 (202)
T 1j2q_H 157 AVRAIYSAMKRDSASGDGIDVVKITEDEFYQ 187 (202)
T ss_dssp HHHHHHHHHTTCTTSCSCEEEEEECSSCEEE
T ss_pred HHHHHHHHHhcCCCCCCcEEEEEEeCCCeEE
Confidence 9999999999999999999999999998553
No 8
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=2.6e-48 Score=306.50 Aligned_cols=192 Identities=20% Similarity=0.280 Sum_probs=184.4
Q ss_pred ceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Q psy1779 7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFA 86 (204)
Q Consensus 7 ~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 86 (204)
||+|||+++||||||+|+|.+.|.++..++.+|||+|++|++++++|..+|++.|.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA 80 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHHHHHH
Q psy1779 87 AIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVC 166 (204)
Q Consensus 87 ~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~~~ 166 (204)
+++++++|.++ +||++++|+||||+ +++|+||.+||+|++. +++++++|+|+++++++||+.|+++||++||++++
T Consensus 81 ~~l~~~~~~~~--~p~~~~~lvaG~D~-~~gp~ly~~d~~G~~~-~~~~~a~Gsgs~~a~~~Le~~~~~~~s~eea~~l~ 156 (205)
T 1iru_H 81 SLFKEMCYRYR--EDLMAGIIIAGWDP-QEGGQVYSVPMGGMMV-RQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFT 156 (205)
T ss_dssp HHHHHHHHHTT--TTCCEEEEEEEEET-TTEEEEEEECTTSCCE-ECSEEEESGGGGGGHHHHHHHCCTTCCHHHHHHHH
T ss_pred HHHHHHHHhcC--cCccEEEEEEEEeC-CCCCEEEEECCCCcEE-ecCEEEECCCHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 99999999876 49999999999997 6799999999999999 69999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccCCCEEEEEEcCCceEEEEeccC
Q psy1779 167 SQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATR 202 (204)
Q Consensus 167 ~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~~~~ 202 (204)
.+||..+.++|..++++++|++|+++|.+++.++.+
T Consensus 157 ~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~l~~~ 192 (205)
T 1iru_H 157 ANALALAMERDGSSGGVIRLAAIAESGVERQVLLGD 192 (205)
T ss_dssp HHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEECGG
T ss_pred HHHHHHHHHhccccCCcEEEEEEeCCCeEEEEeChH
Confidence 999999999999999999999999999988888753
No 9
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=1.7e-48 Score=310.19 Aligned_cols=189 Identities=18% Similarity=0.264 Sum_probs=178.7
Q ss_pred CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP 82 (204)
Q Consensus 3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 82 (204)
.++|+|+|||+++||||||+|+|.+.|.++..++.+||++|++|+++++||..+|++.|.++++.+++.|++++++++++
T Consensus 5 ~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 84 (217)
T 1yar_H 5 LETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPI 84 (217)
T ss_dssp ----CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred CCCCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHH
Q psy1779 83 DTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQL 162 (204)
Q Consensus 83 ~~la~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea 162 (204)
+.+++++++++|++|. |||++++|+|||| ++|+||.+||+|++. +++++|+|+|+++++++||+.|+++||++||
T Consensus 85 ~~la~~l~~~~~~~r~-rp~~v~~lvaG~D---~gp~Ly~idp~G~~~-~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea 159 (217)
T 1yar_H 85 EAVATLLSNMLNQVKY-MPYMVQLLVGGID---TAPHVFSIDAAGGSV-EDIYASTGSGSPFVYGVLESQYSEKMTVDEG 159 (217)
T ss_dssp HHHHHHHHHHHHHTTT-SCCCEEEEEEEES---SSEEEEEECTTCCEE-EESEEEESTTHHHHHHHHHHHCCTTCCHHHH
T ss_pred HHHHHHHHHHHHhcCC-CCceEEEEEEEEC---CCCEEEEECCCCCeE-ecCEEEEcCCHHHHHHHHHhhcccCCCHHHH
Confidence 9999999999999876 8999999999998 579999999999999 6999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCEEEEEEcC-CceEE
Q psy1779 163 FEVCSQVVIQACERDTKSGWGATVYVVEP-DKVTI 196 (204)
Q Consensus 163 ~~~~~~~l~~~~~~d~~~~~~~~v~~i~~-~g~~~ 196 (204)
++++++||..+.+||..++++++|++|++ +|++.
T Consensus 160 ~~la~~al~~~~~rd~~s~~~i~v~vi~~~~g~~~ 194 (217)
T 1yar_H 160 VDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQ 194 (217)
T ss_dssp HHHHHHHHHHHHHHCTTCCSCCEEEEEETTTEEEE
T ss_pred HHHHHHHHHHHHhccCCCCCcEEEEEEECCCCEEE
Confidence 99999999999999999999999999999 87553
No 10
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=4.2e-48 Score=305.40 Aligned_cols=192 Identities=20% Similarity=0.258 Sum_probs=184.3
Q ss_pred CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP 82 (204)
Q Consensus 3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 82 (204)
.++|+|+|||+++||||||+|+|.+.|.++..++.+||++|++|++++++|..+|++.|.++++.+++.|++++++ +++
T Consensus 6 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~-~~v 84 (205)
T 1ryp_H 6 VSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT-PST 84 (205)
T ss_dssp CBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS-CCH
T ss_pred CcCCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC-CCH
Confidence 4689999999999999999999999998888899999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHH
Q psy1779 83 DTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQL 162 (204)
Q Consensus 83 ~~la~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea 162 (204)
+.+++++++++|.+|. + |++++|+||||+ +++|+||.+||+|++. +++++|+|+|++.++++||+.|+++||++||
T Consensus 85 ~~la~~l~~~~~~~~~-~-~~~~~lvaG~D~-~~gp~Ly~id~~G~~~-~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea 160 (205)
T 1ryp_H 85 ETAASVFKELCYENKD-N-LTAGIIVAGYDD-KNKGEVYTIPLGGSVH-KLPYAIAGSGSTFIYGYCDKNFRENMSKEET 160 (205)
T ss_dssp HHHHHHHHHHHHHTTT-T-CCEEEEEEEEET-TTEEEEEEECTTSCCE-EESEEEESGGGGGGHHHHHHHCCTTCCHHHH
T ss_pred HHHHHHHHHHHHhhhc-C-ceEEEEEEEEec-CCCcEEEEECCCccEE-ecCEEEEEecHHHHHHHHHhccCCCCCHHHH
Confidence 9999999999999875 4 999999999997 6789999999999999 6999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEEe
Q psy1779 163 FEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKI 199 (204)
Q Consensus 163 ~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~ 199 (204)
++++.+||..+.+||..++++++|++|+++|++.+.+
T Consensus 161 ~~l~~~al~~a~~~d~~sg~~i~v~vi~~~g~~~~~~ 197 (205)
T 1ryp_H 161 VDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVERLIF 197 (205)
T ss_dssp HHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCccCCeEEEEEEcCCCEEEEEe
Confidence 9999999999999999999999999999999988776
No 11
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=2.7e-48 Score=305.54 Aligned_cols=191 Identities=18% Similarity=0.259 Sum_probs=180.6
Q ss_pred CceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHH
Q psy1779 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTF 85 (204)
Q Consensus 6 g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 85 (204)
|+|+|||+++||||||+|+|.+.|.++..++.+|||+|++|++++++|..+|++.|.++++.+++.|+++++++++++.+
T Consensus 1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~ 80 (201)
T 1iru_K 1 MEYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAA 80 (201)
T ss_dssp CCCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHH
T ss_pred CceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHHHH
Q psy1779 86 AAIASWEL-YARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFE 164 (204)
Q Consensus 86 a~~l~~~l-~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~ 164 (204)
++++++.+ |..+..+||++++|+||||+ +++|+||.+||+|++. +++++|+|+|+++++++||+.|+++||++||++
T Consensus 81 a~~~~~~l~~~~~~~~p~~~~~lvaG~D~-~~gp~Ly~id~~G~~~-~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~ 158 (201)
T 1iru_K 81 ANFTRRNLADCLRSRTPYHVNLLLAGYDE-HEGPALYYMDYLAALA-KAPFAAHGYGAFLTLSILDRYYTPTISRERAVE 158 (201)
T ss_dssp HHHHHHHHHHHHTSSSCCCEEEEEEEEET-TTEEEEEEECTTCCEE-ECSEEEESHHHHHHHHHHHHHCCTTCCHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCccEEEEEEEEeC-CCCeEEEEECCCcCeE-ECCEEEECCcHHHHHHHHHhcccCCCCHHHHHH
Confidence 99999876 54343269999999999996 6799999999999998 799999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCCEEEEEEcCCceEEEE
Q psy1779 165 VCSQVVIQACERDTKSGWGATVYVVEPDKVTIRK 198 (204)
Q Consensus 165 ~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~ 198 (204)
++.+||..+.+||..++++++|++|+++|++...
T Consensus 159 l~~~al~~a~~rd~~sg~~i~v~vi~~~g~~~~~ 192 (201)
T 1iru_K 159 LLRKCLEELQKRFILNLPTFSVRIIDKNGIHDLD 192 (201)
T ss_dssp HHHHHHHHHHHTBCBCCCCEEEEEEETTEEECCC
T ss_pred HHHHHHHHHHhhccccCCceEEEEEcCCCeEEee
Confidence 9999999999999999999999999999988654
No 12
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=3e-48 Score=311.83 Aligned_cols=193 Identities=15% Similarity=0.196 Sum_probs=183.9
Q ss_pred CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHH-----hcC
Q psy1779 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVA-----SEQ 77 (204)
Q Consensus 3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-----~~~ 77 (204)
-.+|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|++|++++++|..+|++.|.++++.+++.|++ +++
T Consensus 5 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (233)
T 1ryp_N 5 IVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAE 84 (233)
T ss_dssp CEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTTTTT
T ss_pred ccCCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchhhcC
Confidence 357999999999999999999999999999999999999999999999999999999999999999999999 899
Q ss_pred CCCCHHHHHHHHHHHHHhcccC-CCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCC-
Q psy1779 78 SPISPDTFAAIASWELYARKLT-SPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQP- 155 (204)
Q Consensus 78 ~~~~~~~la~~l~~~l~~~r~~-~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~- 155 (204)
++++++.+++++++++|++|.. |||++++||||||+ +++|+||++||+|++. +++++|+|+|+++++++||+.|++
T Consensus 85 ~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~-~~gp~Ly~id~~G~~~-~~~~~aiGsgs~~a~~~Le~~~~~~ 162 (233)
T 1ryp_N 85 EALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQS-NGDQFLRYVNLLGVTY-SSPTLATGFGAHMANPLLRKVVDRE 162 (233)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECT-TSCEEEEEEETTCCEE-CCSEEECTHHHHHHHHHHTTTCSSG
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCCCceEEEEEEEEcC-CCCEEEEEECCCcCeE-EcCEEEECcCHHHHHHHHHHhhccc
Confidence 9999999999999999998742 89999999999997 5699999999999998 699999999999999999999999
Q ss_pred ----CCCHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCC-ceEEE
Q psy1779 156 ----GLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPD-KVTIR 197 (204)
Q Consensus 156 ----~ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~-g~~~~ 197 (204)
+||++||++++++||..+.+||..++++++|++|+++ |++..
T Consensus 163 ~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~g~~~~ 209 (233)
T 1ryp_N 163 SDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFK 209 (233)
T ss_dssp GGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEE
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEECCCCeEEc
Confidence 9999999999999999999999999999999999999 87654
No 13
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=3.2e-48 Score=308.94 Aligned_cols=193 Identities=18% Similarity=0.207 Sum_probs=183.5
Q ss_pred CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHH-hcCCCCC
Q psy1779 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVA-SEQSPIS 81 (204)
Q Consensus 3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-~~~~~~~ 81 (204)
..+|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|++|++++++|..+|++.|.++++.+++.|++ +++++++
T Consensus 5 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (219)
T 1iru_N 5 MVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYS 84 (219)
T ss_dssp CSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSCCCC
T ss_pred ccCCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 467999999999999999999999999999999999999999999999999999999999999999999998 8999999
Q ss_pred HHHHHHHHHHHHHhccc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCC--CCC
Q psy1779 82 PDTFAAIASWELYARKL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQP--GLS 158 (204)
Q Consensus 82 ~~~la~~l~~~l~~~r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~--~ms 158 (204)
++.+++++++++|++|. .|||++++||||+|+ ++|+||++||+|++. +++++|+|+|+++++++||+.|++ +||
T Consensus 85 v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~--~gp~Ly~id~~G~~~-~~~~~aiGsgs~~a~~~Le~~~~~~~~mt 161 (219)
T 1iru_N 85 PRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYAD--GESFLGYVDMLGVAY-EAPSLATGYGAYLAQPLLREVLEKQPVLS 161 (219)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCEEEEEEEEET--TEEEEEEECSSCCEE-ECSEEECTTHHHHTHHHHHHHHTSCSCCC
T ss_pred HHHHHHHHHHHHHHhcccCCCceEEEEEEEEEC--CCCEEEEECCCCCeE-ECCeEEECccHHHHHHHHHhhcCCCCCCC
Confidence 99999999999998863 289999999999996 699999999999999 699999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEE
Q psy1779 159 PEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRK 198 (204)
Q Consensus 159 ~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~ 198 (204)
++||++++++||..+.+||..++++++|++|+++|++...
T Consensus 162 ~eea~~l~~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~ 201 (219)
T 1iru_N 162 QTEARDLVERCMRVLYYRDARSYNRFQTATVTEKGVEIEG 201 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEcCCCEEEcC
Confidence 9999999999999999999999999999999999966443
No 14
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=1.5e-47 Score=302.04 Aligned_cols=186 Identities=19% Similarity=0.202 Sum_probs=179.5
Q ss_pred ceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Q psy1779 7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFA 86 (204)
Q Consensus 7 ~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 86 (204)
||+|||+++||||||+|+|.+.|.++..++.+|||+|++|+++++||..+|++.|.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS 80 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHHHHHH
Q psy1779 87 AIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVC 166 (204)
Q Consensus 87 ~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~~~ 166 (204)
+++++++|.+|. +||++++|+||||+ ++|+||++||+|++. +++++|+|+|+++++++||+.|+++||++||++++
T Consensus 81 ~~l~~~~~~~r~-~~~~v~~lvaG~D~--~gp~Ly~idp~G~~~-~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l~ 156 (204)
T 1iru_L 81 KLLANMVYQYKG-MGLSMGTMICGWDK--RGPGLYYVDSEGNRI-SGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLA 156 (204)
T ss_dssp HHHHHHHHTTTT-SCCCBEEEEEEECS--SSEEEEEEESSSCEE-ECSEEEESTTHHHHHHHHHTTCCTTCCHHHHHHHH
T ss_pred HHHHHHHHHhCC-CCeeEEEEEEEEeC--CCCEEEEECCCCcEE-EeCCEEEEcCHHHHHHHHhccCCCCCCHHHHHHHH
Confidence 999999998876 79999999999996 789999999999999 69999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccCCCEEEEEEcCCceEE
Q psy1779 167 SQVVIQACERDTKSGWGATVYVVEPDKVTI 196 (204)
Q Consensus 167 ~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~ 196 (204)
++||..+.+||..++++++|++|+++|++.
T Consensus 157 ~~al~~~~~rd~~s~~~i~v~vi~~~g~~~ 186 (204)
T 1iru_L 157 RRAIYQATYRDAYSGGAVNLYHVREDGWIR 186 (204)
T ss_dssp HHHHHHHHHHBTTCCSEEEEEEECSSCEEE
T ss_pred HHHHHHHHHhCccCCCceEEEEEeCCceEE
Confidence 999999999999899999999999999654
No 15
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=8.4e-48 Score=316.94 Aligned_cols=193 Identities=22% Similarity=0.244 Sum_probs=182.2
Q ss_pred CCCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCC
Q psy1779 2 SLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPIS 81 (204)
Q Consensus 2 ~~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 81 (204)
+-.+|+|+|||+++||||||+|+|.+.|.++..++.+||++|++|++++++|..+|++.|.++++.+++.|+++++++++
T Consensus 71 ~v~~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~l~~~lr~~~~~y~~~~~~~is 150 (287)
T 3nzj_K 71 KIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERIS 150 (287)
T ss_dssp -----CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred heccCceEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHH
Q psy1779 82 PDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQ 161 (204)
Q Consensus 82 ~~~la~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~e 161 (204)
++.+++++++++|.+|. .||++++||||||+ +++|+||++||+|++. +++++|+|+|+++++++||+.|+++||++|
T Consensus 151 v~~la~~ls~~l~~~r~-~p~~v~~lvaG~D~-~~gp~Ly~iDp~G~~~-~~~~~AiGsgs~~a~~~Le~~y~~dms~eE 227 (287)
T 3nzj_K 151 VAAASKILSNLVYQYKG-AGLSMGTMICGYTR-KEGPTIYYVDSDGTRL-KGDIFCVGSGQTFAYGVLDSNYKWDLSVED 227 (287)
T ss_dssp HHHHHHHHHHHHHHTTT-SCCCEEEEEEEEET-TTEEEEEEEETTCCEE-ECSEEEESTTHHHHHHHHHTSCCTTCCHHH
T ss_pred HHHHHHHHHHHHHhhcC-CCceEEEEEEEEcC-CCCCEEEEECCCceEE-EcCeEEEecchHHHHHHHHHhhcCCCCHHH
Confidence 99999999999998876 79999999999997 6899999999999999 799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEE
Q psy1779 162 LFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIR 197 (204)
Q Consensus 162 a~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~ 197 (204)
|++++++||..+.+||..++++++|++|+++|++..
T Consensus 228 Ai~la~~aL~~a~~rD~~sg~~i~V~vItkdg~~~l 263 (287)
T 3nzj_K 228 ALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYH 263 (287)
T ss_dssp HHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHhhCcCCCCceEEEEEeCCCEEEe
Confidence 999999999999999999999999999999997654
No 16
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=1.5e-47 Score=307.61 Aligned_cols=187 Identities=17% Similarity=0.202 Sum_probs=179.7
Q ss_pred ceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Q psy1779 7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFA 86 (204)
Q Consensus 7 ~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 86 (204)
||+|||+++||||||+|+|.+.|.++..++.+|||+|++|+++++||..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVT 80 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Confidence 69999999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHHHHHH
Q psy1779 87 AIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVC 166 (204)
Q Consensus 87 ~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~~~ 166 (204)
+++++++|.++ +||++++|+||||+ ++|+||++||+|++. +++++|+|+|++.++++||+.|+++||++||++++
T Consensus 81 ~~l~~~l~~~~--~p~~v~llvaG~D~--~gp~Ly~idp~G~~~-~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la 155 (234)
T 3unf_H 81 RILRQTLFRYQ--GHVGASLVVGGVDL--NGPQLYEVHPHGSYS-RLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELL 155 (234)
T ss_dssp HHHHHHHHHTT--TCSCEEEEEEEEET--TEEEEEEECTTSCEE-ECSEEEEETTHHHHHHHHHHHCCSSCCHHHHHHHH
T ss_pred HHHHHHHHhcC--CCccEEEEEEEEeC--CCCEEEEECCCCCEE-eccEEEEcCCchhhHHHHHhccCCCCCHHHHHHHH
Confidence 99999998764 79999999999996 689999999999999 79999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccCCCEEEEEEcCCceEEEE
Q psy1779 167 SQVVIQACERDTKSGWGATVYVVEPDKVTIRK 198 (204)
Q Consensus 167 ~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~ 198 (204)
++||..+.++|..++++++|++|+++|++...
T Consensus 156 ~~al~~~~~~D~~sg~~iev~vi~~dg~~~l~ 187 (234)
T 3unf_H 156 VEAITAGILSDLGSGGNVDACVITAGGAKLQR 187 (234)
T ss_dssp HHHHHHHHHHBTTCCSCEEEEEEESSCEEEEE
T ss_pred HHHHHHHHhhcCCCCCcEEEEEEECCCEEEeC
Confidence 99999999999999999999999999987543
No 17
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=2e-47 Score=302.94 Aligned_cols=187 Identities=21% Similarity=0.232 Sum_probs=180.0
Q ss_pred ceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Q psy1779 7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFA 86 (204)
Q Consensus 7 ~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 86 (204)
||+|||+++||||||+|+|.+.|.++..++.+|||+|++|+++++||..+|++.|.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 80 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHHHHHH
Q psy1779 87 AIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVC 166 (204)
Q Consensus 87 ~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~~~ 166 (204)
+++++++|.++. .||++++|+||||+ +++|+||.+||+|++. +++++|+|+|+++++++||+.|+++||++||++++
T Consensus 81 ~~l~~~~~~~~~-~p~~v~~lvaG~D~-~~gp~Ly~idp~G~~~-~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~la 157 (212)
T 1ryp_L 81 KILSNLVYQYKG-AGLSMGTMICGYTR-KEGPTIYYVDSDGTRL-KGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLG 157 (212)
T ss_dssp HHHHHHHHHTTT-SCCCBEEEEEEEET-TTEEEEEEEETTCCEE-ECSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHH
T ss_pred HHHHHHHHhhCC-CCceEEEEEEEEeC-CCCCEEEEEcCCceeE-ecCCEEEcCCHHHHHHHHHhhCCCCCCHHHHHHHH
Confidence 999999998865 69999999999996 5799999999999999 69999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccCCCEEEEEEcCCceEE
Q psy1779 167 SQVVIQACERDTKSGWGATVYVVEPDKVTI 196 (204)
Q Consensus 167 ~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~ 196 (204)
++||..+.+||..++++++|++|+++|++.
T Consensus 158 ~~al~~~~~rd~~s~~~i~v~vi~~~g~~~ 187 (212)
T 1ryp_L 158 KRSILAAAHRDAYSGGSVNLYHVTEDGWIY 187 (212)
T ss_dssp HHHHHHHHHHBTTCCSEEEEEEEETTEEEE
T ss_pred HHHHHHHHHhccccCCceEEEEEcCCceEE
Confidence 999999999999999999999999999654
No 18
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=2.2e-47 Score=299.93 Aligned_cols=190 Identities=19% Similarity=0.233 Sum_probs=180.6
Q ss_pred ceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Q psy1779 7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFA 86 (204)
Q Consensus 7 ~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 86 (204)
||+|||+++||||||+|+|.+.|.++..++.+|||+|++|++++++|..+|++.|.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAA 80 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 69999999999999999999999899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHHHHHH
Q psy1779 87 AIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVC 166 (204)
Q Consensus 87 ~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~~~ 166 (204)
+++++++|.+| +||++++||||||+ +++|+||+ |+|++.+..+++++|+|+++++++||+.|+++||++||++++
T Consensus 81 ~~l~~~l~~~~--~p~~v~~lvaG~D~-~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~~~ms~eea~~la 155 (199)
T 3unf_N 81 NVVKNISYKYR--EDLLAHLIVAGWDQ-REGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFT 155 (199)
T ss_dssp HHHHHHHHHTT--TTCCCCEEEEEEET-TTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHCCSSCCHHHHHHHH
T ss_pred HHHHHHHHhcC--CCceEEEEEEEEeC-CCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhcCCCCCHHHHHHHH
Confidence 99999999876 79999999999997 68899999 999976445677789999999999999999999999999999
Q ss_pred HHHHHHHHhhccccCCCEEEEEEcCCceEEEEecc
Q psy1779 167 SQVVIQACERDTKSGWGATVYVVEPDKVTIRKIAT 201 (204)
Q Consensus 167 ~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~~~ 201 (204)
.+||..+.+||..++++++|++|+++|++++.++.
T Consensus 156 ~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~l~~ 190 (199)
T 3unf_N 156 TNAITLAMNRDGSSGGVIYLVTITAAGVDHRVILG 190 (199)
T ss_dssp HHHHHHHHHHCTTCCSCEEEEEECSSCEEEEEECG
T ss_pred HHHHHHHHHhccccCCCeEEEEEcCCCEEEEEcCc
Confidence 99999999999999999999999999999988875
No 19
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=5.6e-48 Score=312.05 Aligned_cols=192 Identities=17% Similarity=0.100 Sum_probs=180.2
Q ss_pred CCC-CceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCC
Q psy1779 3 LND-GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPIS 81 (204)
Q Consensus 3 ~~~-g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 81 (204)
.++ |+|+|||+++||||||+|+|.+ +.++..++.+|||+|++|++++++|..+|++.|.++++.+++.|+++++++++
T Consensus 26 v~~~Gtt~vgi~~~dgVvlaad~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~r~~~~~~~~~~~~~~~ 104 (243)
T 1ryp_A 26 TNQTNINSLAVRGKDCTVVISQKKVP-DKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMP 104 (243)
T ss_dssp TTTTCCCEEEEECSSEEEEEEECCCC-CTTBCGGGCCSEEECSSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HhcCCCcEEEEEeCCEEEEEEEecCC-ccccCCCcCCceEEECCCEEEEEEecHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 356 9999999999999999999998 77888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--Hhccc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCC---
Q psy1779 82 PDTFAAIASWEL--YARKL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQP--- 155 (204)
Q Consensus 82 ~~~la~~l~~~l--~~~r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~--- 155 (204)
++.+++++++++ |++|. .|||+|++||||||+ +++|+||++||+|++. +++++|+|++++.++++||+.|++
T Consensus 105 v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~-~~gp~Ly~~dp~G~~~-~~~~~a~G~gs~~a~~~Le~~~~~~~~ 182 (243)
T 1ryp_A 105 CDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDE-ELGPSIYKTDPAGYYV-GYKATATGPKQQEITTNLENHFKKSKI 182 (243)
T ss_dssp HHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEET-TTEEEEEEECTTSCEE-EBSEEEESTTHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHhccCCccccceEEEEEEEcC-CCCcEEEEEcCCCCEE-EEEEEEECCCcHHHHHHHHHHhhhccc
Confidence 999999999999 77763 289999999999996 6899999999999999 699999999999999999999998
Q ss_pred ----CCCHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEEec
Q psy1779 156 ----GLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIA 200 (204)
Q Consensus 156 ----~ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~~ 200 (204)
+||++||++++++||..+.+|| .++++++|++|+++| ++.++
T Consensus 183 ~~~~~ms~eea~~l~~~al~~~~~rd-~s~~~iev~vi~~~g--~~~l~ 228 (243)
T 1ryp_A 183 DHINEESWEKVVEFAITHMIDALGTE-FSKNDLEVGVATKDK--FFTLS 228 (243)
T ss_dssp SSCCCSSHHHHHHHHHHHHHHHHTCC-CCTTSEEEEEEETTE--EEECC
T ss_pred ccccCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCC--eEECC
Confidence 9999999999999999999999 789999999999999 44443
No 20
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=3.1e-47 Score=309.97 Aligned_cols=186 Identities=20% Similarity=0.239 Sum_probs=177.1
Q ss_pred CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP 82 (204)
Q Consensus 3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 82 (204)
.++|+|+|||+++||||||+|+|.+.|.++..++.+|||+|++|+++++||..+|++.|.++++.+++.|++++++++++
T Consensus 26 v~~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~~~v 105 (261)
T 3nzj_H 26 TSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRV 105 (261)
T ss_dssp ----CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCH
T ss_pred cccCceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhCCCCCH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHH
Q psy1779 83 DTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQL 162 (204)
Q Consensus 83 ~~la~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea 162 (204)
+.+++++++++|+++ +||++++||||||+ ++|+||++||+|++. +++++|+|+|++.++++||+.|+++||+|||
T Consensus 106 ~~~a~~l~~~l~~~~--~~~gv~llvaG~D~--~Gp~Ly~iDp~G~~~-~~~~~aiGsgs~~a~~~Le~~~~~~ms~eEA 180 (261)
T 3nzj_H 106 VSALQMLKQHLFKYQ--GHIGAYLIVAGVDP--TGSHLFSIHAHGSTD-VGYYLSLGSGSLAAMAVLESHWKQDLTKEEA 180 (261)
T ss_dssp HHHHHHHHHHHHHTT--TCSCEEEEEEEEET--TEEEEEEECTTSCEE-ECSEEEESTTHHHHHHHHHHHCCSSCCHHHH
T ss_pred HHHHHHHHHHHHHhc--CcccEEEEEEEEeC--CCCEEEEECCCccEE-ecCeEEeccchHHHHHHHHHHhccCCCHHHH
Confidence 999999999998765 79999999999997 689999999999999 6999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCEEEEEEcCCc
Q psy1779 163 FEVCSQVVIQACERDTKSGWGATVYVVEPDK 193 (204)
Q Consensus 163 ~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g 193 (204)
++++.+||..+.++|..++++++|++|+++|
T Consensus 181 ~~la~~al~~a~~rD~~sg~~iev~vI~kdg 211 (261)
T 3nzj_H 181 IKLASDAIQAGIWNDLGSGSNVDVCVMEIGK 211 (261)
T ss_dssp HHHHHHHHHHHHHHCTTCCSCEEEEEEETTS
T ss_pred HHHHHHHHHHHHhhCCCCCCcEEEEEEECCC
Confidence 9999999999999999999999999999999
No 21
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=7.4e-47 Score=301.68 Aligned_cols=186 Identities=20% Similarity=0.223 Sum_probs=179.0
Q ss_pred ceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Q psy1779 7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFA 86 (204)
Q Consensus 7 ~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 86 (204)
||+|||+++||||||+|+|.+.|.++..++.+||++|++|+++++||..+|++.|.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 80 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 68999999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHHHHHH
Q psy1779 87 AIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVC 166 (204)
Q Consensus 87 ~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~~~ 166 (204)
+++++.+|+++ +||++++|+||+|+ ++|+||.+||+|++. +++++|+|+|++.++++||+.|+++||++||++++
T Consensus 81 ~~l~~~l~~~~--~p~~v~~lvaG~D~--~gp~Ly~idp~G~~~-~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la 155 (222)
T 1ryp_I 81 QMLKQHLFKYQ--GHIGAYLIVAGVDP--TGSHLFSIHAHGSTD-VGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLA 155 (222)
T ss_dssp HHHHHHHHHTT--TCSCEEEEEEEEET--TEEEEEEECTTSCEE-ECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHH
T ss_pred HHHHHHHhhcC--CCCCeeEEEEEEeC--CCCEEEEECCCCCEE-ecCEEEECCCHHHHHHHHHhhCCCCcCHHHHHHHH
Confidence 99999998875 79999999999996 689999999999998 79999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccCCCEEEEEEcCCc-eEEE
Q psy1779 167 SQVVIQACERDTKSGWGATVYVVEPDK-VTIR 197 (204)
Q Consensus 167 ~~~l~~~~~~d~~~~~~~~v~~i~~~g-~~~~ 197 (204)
++||..+.++|..++++++|++|+++| ++..
T Consensus 156 ~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~ 187 (222)
T 1ryp_I 156 SDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYL 187 (222)
T ss_dssp HHHHHHHHHHCTTCCSCEEEEEEETTSCEEEE
T ss_pred HHHHHHHHhccccCCCcEEEEEEECCCCEEEE
Confidence 999999999999899999999999999 7753
No 22
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=3.7e-47 Score=307.80 Aligned_cols=193 Identities=18% Similarity=0.127 Sum_probs=181.3
Q ss_pred CCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHH
Q psy1779 5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDT 84 (204)
Q Consensus 5 ~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 84 (204)
+|+|+|||+++||||||+|+|.+ +.++..++.+|||+|++|++++++|..+|++.|.++++.+++.|+++++++++++.
T Consensus 35 ~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~ 113 (246)
T 1iru_A 35 GGLTSVAVRGKDCAVIVTQKKVP-DKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDM 113 (246)
T ss_dssp TCCEEEEEECSSEEEEEEECCCC-CSSBCGGGCCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHH
T ss_pred CCCCEEEEEeCCEEEEEEeecCC-CcccCCCccCceEEECCCEEEEEeccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 39999999999999999999998 67888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH--Hhccc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCC--CCCH
Q psy1779 85 FAAIASWEL--YARKL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQP--GLSP 159 (204)
Q Consensus 85 la~~l~~~l--~~~r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~--~ms~ 159 (204)
+++++++++ |+++. .|||+|++||||||+ +++|+||++||+|++. +++++|+|+|++.++++||+.|++ +||+
T Consensus 114 la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~-~~gp~Ly~idp~G~~~-~~~~~aiG~gs~~a~~~Le~~~~~~~~ms~ 191 (246)
T 1iru_A 114 LCKRIADISQVYTQNAEMRPLGCCMILIGIDE-EQGPQVYKCDPAGYYC-GFKATAAGVKQTESTSFLEKKVKKKFDWTF 191 (246)
T ss_dssp HHHHHHHHHHHHHHBSSBCCCSEEEEEEEEET-TTEEEEEEECTTSCEE-EBSEEEEETTHHHHHHHHHHHTTSCCCCCH
T ss_pred HHHHHHHHHHHHhcCCCCCCcceEEEEEEEeC-CCCeEEEEEcCCeeEE-EeeEEEECCCcHHHHHHHHHhhcccCCCCH
Confidence 999999985 66553 289999999999996 6899999999999999 699999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEEecc
Q psy1779 160 EQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIAT 201 (204)
Q Consensus 160 ~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~~~ 201 (204)
+||++++++||..+.+|| .++++++|++|+++|++++.++.
T Consensus 192 eea~~la~~al~~~~~rd-~sg~~i~v~vi~~~g~~~~~l~~ 232 (246)
T 1iru_A 192 EQTVETAITCLSTVLSID-FKPSEIEVGVVTVENPKFRILTE 232 (246)
T ss_dssp HHHHHHHHHHHHHHTTCC-CCTTSEEEEEEETTEEEEEECCH
T ss_pred HHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCCCeEEECCH
Confidence 999999999999999999 88999999999999987777653
No 23
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=3.4e-47 Score=311.12 Aligned_cols=192 Identities=15% Similarity=0.192 Sum_probs=183.2
Q ss_pred CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHH-----hcCC
Q psy1779 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVA-----SEQS 78 (204)
Q Consensus 4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-----~~~~ 78 (204)
.+|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|++|++++++|..+|++.|.++++.+++.|++ ++++
T Consensus 39 ~~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~~~~~ 118 (266)
T 1g0u_M 39 VTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEE 118 (266)
T ss_dssp EEECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTTTTTT
T ss_pred ccCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhhhccchhhcCC
Confidence 46999999999999999999999999999999999999999999999999999999999999999999998 8999
Q ss_pred CCCHHHHHHHHHHHHHhcccC-CCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCC--
Q psy1779 79 PISPDTFAAIASWELYARKLT-SPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQP-- 155 (204)
Q Consensus 79 ~~~~~~la~~l~~~l~~~r~~-~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~-- 155 (204)
+++++.+++++++++|++|.. |||++++||||+|+ +++|+||.+||+|++. +++++|+|+|+++++++||+.|++
T Consensus 119 ~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~-~~gp~Ly~idp~G~~~-~~~~~aiGsgs~~a~~~Le~~~~~~~ 196 (266)
T 1g0u_M 119 ALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQS-NGDQFLRYVNLLGVTY-SSPTLATGFGAHMANPLLRKVVDRES 196 (266)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECT-TSCEEEEEEETTCCEE-CCSEEECTHHHHTHHHHHTTTCSSGG
T ss_pred CCCHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcC-CCCEEEEEECCCCCEE-eCCEEEEccCHHHHHHHHHHhhcccc
Confidence 999999999999999998742 89999999999997 5699999999999998 699999999999999999999999
Q ss_pred ---CCCHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCC-ceEEE
Q psy1779 156 ---GLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPD-KVTIR 197 (204)
Q Consensus 156 ---~ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~-g~~~~ 197 (204)
+||++||++++++||..+.+||..++++++|++|+++ |++..
T Consensus 197 ~~~~ms~eeA~~la~~al~~a~~rd~~sg~~i~v~vI~k~~g~~~~ 242 (266)
T 1g0u_M 197 DIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFK 242 (266)
T ss_dssp GGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEE
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEECCCCeEEc
Confidence 9999999999999999999999999999999999999 87654
No 24
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=7.8e-47 Score=305.53 Aligned_cols=195 Identities=10% Similarity=0.105 Sum_probs=181.0
Q ss_pred CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHH
Q psy1779 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPD 83 (204)
Q Consensus 4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 83 (204)
++|+|+|||+++||||||+|+|.+.|.....++.+|||+|++|+++++||..+|++.|.++++.+++.|+++++++++++
T Consensus 29 ~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~ 108 (244)
T 1ryp_C 29 SHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVE 108 (244)
T ss_dssp TTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred hcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 57999999999999999999999998777688999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--c-cCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHH
Q psy1779 84 TFAAIASWELYAR--K-LTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPE 160 (204)
Q Consensus 84 ~la~~l~~~l~~~--r-~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ 160 (204)
.+++++++++|.. + ..|||++++||||||+ +++|+||++||+|++. +++++|+|+|++.++++||+.|+++||++
T Consensus 109 ~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~-~~gp~Ly~idp~G~~~-~~~~~aiGsgs~~a~~~Le~~~~~~ms~e 186 (244)
T 1ryp_C 109 ILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDD-RYGYQLYTSNPSGNYT-GWKAISVGANTSAAQTLLQMDYKDDMKVD 186 (244)
T ss_dssp HHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEET-TTEEEEEEECTTCCEE-EBSEEEESTTHHHHHHHHHHHCCTTCCHH
T ss_pred HHHHHHHHHHHHHhccCCccceEEEEEEEEEcC-CCCCEEEEECCCccEE-eeeEEEECCCcHHHHHHHHHhhhcCCCHH
Confidence 9999999999543 2 2389999999999995 5899999999999999 69999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccCCCEEEEEEc--CCceE--EEEec
Q psy1779 161 QLFEVCSQVVIQACERDTKSGWGATVYVVE--PDKVT--IRKIA 200 (204)
Q Consensus 161 ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~--~~g~~--~~~~~ 200 (204)
||++++++||..+.+||..++++++|++|+ ++|.. ++.++
T Consensus 187 ea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~~~~~~~~~~l~ 230 (244)
T 1ryp_C 187 DAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQKIFK 230 (244)
T ss_dssp HHHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSSSSSCEEEECC
T ss_pred HHHHHHHHHHHHHhccccCCCCcEEEEEEEeecCCCceeEEECC
Confidence 999999999999999955679999999999 99863 55554
No 25
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=8.6e-47 Score=303.34 Aligned_cols=187 Identities=14% Similarity=0.131 Sum_probs=176.1
Q ss_pred CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHH
Q psy1779 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPD 83 (204)
Q Consensus 4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 83 (204)
++|+|+|||+++||||||+|+|.+ +.++..++.+||++|++|++++++|..+|++.|.++++.+++.|+++++++++++
T Consensus 29 ~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~ 107 (233)
T 1iru_B 29 AGGAPSVGIKAANGVVLATEKKQK-SILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTA 107 (233)
T ss_dssp HTSCCEEEEECSSCEEEEEECCCC-CSSBCSTTCCSSEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred HcCCcEEEEEeCCEEEEEEEecCC-ccccccccCCeEEEECCCEEEEEEEccHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 579999999999999999999998 6788888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--hccc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHH
Q psy1779 84 TFAAIASWELY--ARKL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPE 160 (204)
Q Consensus 84 ~la~~l~~~l~--~~r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ 160 (204)
.++++++++++ +++. .|||++++||||||. ++|+||++||+|++. +++++|+|+|++.++++||+.|+++||++
T Consensus 108 ~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~--~gp~Ly~id~~G~~~-~~~~~aiG~gs~~a~~~Le~~~~~~ms~e 184 (233)
T 1iru_B 108 QLVQRVASVMQEYTQSGGVRPFGVSLLICGWNE--GRPYLFQSDPSGAYF-AWKATAMGKNYVNGKTFLEKRYNEDLELE 184 (233)
T ss_dssp HHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECS--SSEEEEEECTTSCEE-EBSEEEESTTHHHHHHHHHHHCCTTCCHH
T ss_pred HHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeC--CCCeEEEECCCCCEE-EeeEEEECCCCHHHHHHHHHHhccCCCHH
Confidence 99999999994 4432 289999999999995 789999999999999 69999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceE
Q psy1779 161 QLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVT 195 (204)
Q Consensus 161 ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~ 195 (204)
||++++++||..+.++| .++++++|++|+++|++
T Consensus 185 ea~~la~~al~~~~~~d-~sg~~i~v~vi~~~g~~ 218 (233)
T 1iru_B 185 DAIHTAILTLKESFEGQ-MTEDNIEVGICNEAGFR 218 (233)
T ss_dssp HHHHHHHHHHHTTCCSC-CCSSSEEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHhhcc-CCCCCEEEEEEECCCEE
Confidence 99999999999999999 77999999999999954
No 26
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=1.4e-46 Score=306.80 Aligned_cols=195 Identities=10% Similarity=0.122 Sum_probs=182.8
Q ss_pred CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHH
Q psy1779 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPD 83 (204)
Q Consensus 4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 83 (204)
++|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|++|+++++||..+|++.|.++++.+++.|+++++++++++
T Consensus 29 ~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~ 108 (261)
T 1iru_C 29 GHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCE 108 (261)
T ss_dssp TTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred hcCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 68999999999999999999999999888887899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcc--c-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCC-CCCH
Q psy1779 84 TFAAIASWELYARK--L-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQP-GLSP 159 (204)
Q Consensus 84 ~la~~l~~~l~~~r--~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~-~ms~ 159 (204)
.+++++++++|..+ . .|||++++||||||+ +++|+||++||+|++. +++++|+|+|+++++++||+.|++ +||+
T Consensus 109 ~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~-~~gp~Ly~idp~G~~~-~~~~~aiGsgs~~a~~~Le~~~~~~~ms~ 186 (261)
T 1iru_C 109 QLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDK-HYGFQLYQSDPSGNYG-GWKATCIGNNSAAAVSMLKQDYKEGEMTL 186 (261)
T ss_dssp HHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEET-TTEEEEEEEETTTEEE-ECSEEEESTTTTHHHHHHHHHCCTTCCCH
T ss_pred HHHHHHHHHHHHhccccCcCcceEEEEEEEEeC-CCCcEEEEECCCceEE-eeeeEEeCcccHHHHHHHHHhhccCCCCH
Confidence 99999999998653 1 389999999999996 6799999999999999 699999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCce--EEEEec
Q psy1779 160 EQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKV--TIRKIA 200 (204)
Q Consensus 160 ~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~--~~~~~~ 200 (204)
+||++++++||..+.++|..++++++|++|+++|. .++.++
T Consensus 187 eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~~~~~~~~~l~ 229 (261)
T 1iru_C 187 KSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLK 229 (261)
T ss_dssp HHHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCSSSCEEEECC
T ss_pred HHHHHHHHHHHHHHHhccCCCCCcEEEEEEEcCCCeeeEEECC
Confidence 99999999999999999999999999999999985 245543
No 27
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=3.6e-46 Score=299.82 Aligned_cols=185 Identities=18% Similarity=0.198 Sum_probs=178.0
Q ss_pred ceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Q psy1779 7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFA 86 (204)
Q Consensus 7 ~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 86 (204)
||+|||+++||||||+|+|.+.|.++..++.+|||+|++|+++++||..+|++.|.++++.+++.|+++++++++++.++
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN 80 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 68999999999999999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHHHHHH
Q psy1779 87 AIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVC 166 (204)
Q Consensus 87 ~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~~~ 166 (204)
+++++.+|.++ +||++++|+||||+ ++|+||.+||+|++. +++++|+|+|++.++++||+.|+++||++||++++
T Consensus 81 ~~l~~~l~~~~--~~~~v~llvaG~D~--~gp~Ly~idp~G~~~-~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la 155 (234)
T 1iru_I 81 RMLKQMLFRYR--GYIGAALVLGGVDV--TGPHLYSIYPHGSTD-KLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLV 155 (234)
T ss_dssp HHHHHHHHHTT--TCSCEEEEEEEECS--SCEEEEEECTTSCEE-ECSEEEESTTHHHHHHHHHHSCCTTCCHHHHHTHH
T ss_pred HHHHHHHHhcC--CCCceeEEEEEEcC--CCCEEEEECCCCCEE-ecCEEEECCchHHHHHHHHHhccCCCCHHHHHHHH
Confidence 99999998875 69999999999996 689999999999998 79999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccCCCEEEEEEcCCceEE
Q psy1779 167 SQVVIQACERDTKSGWGATVYVVEPDKVTI 196 (204)
Q Consensus 167 ~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~ 196 (204)
.+||..+.++|..++++++|++|+++|++.
T Consensus 156 ~~al~~a~~~d~~sg~~i~v~vi~k~g~~~ 185 (234)
T 1iru_I 156 SEAIAAGIFNDLGSGSNIDLCVISKNKLDF 185 (234)
T ss_dssp HHHHHHHHHHCTTCCSCEEEEEEETTEEEC
T ss_pred HHHHHHHHHhcccCCCCEEEEEEECCcEEE
Confidence 999999999999899999999999999763
No 28
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=2e-46 Score=301.26 Aligned_cols=191 Identities=13% Similarity=0.099 Sum_probs=177.8
Q ss_pred CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP 82 (204)
Q Consensus 3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 82 (204)
.++|+|+|||+++||||||+|+|.+.+ ++..++.+||++|++|+++++||..+|++.|.++++.+++.|+.++++++++
T Consensus 31 v~~Gtt~vgi~~~dgVvlaaD~r~~~~-~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 109 (233)
T 1yar_A 31 VKKGSTALGMKFANGVLLISDKKVRSR-LIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNI 109 (233)
T ss_dssp HTTSCCEEEEEETTEEEEEECCCCCCT-TBCSTTCCSEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HhcCCcEEEEEECCEEEEEEeccCCcc-cccccccCeEEEecCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 357999999999999999999999986 6667889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc---cCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCH
Q psy1779 83 DTFAAIASWELYARK---LTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSP 159 (204)
Q Consensus 83 ~~la~~l~~~l~~~r---~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~ 159 (204)
+.+++++++++|..+ ..|||++++||||||+ ++|+||.+||+|++. +++++|+|+|++.++++||+.|+++||+
T Consensus 110 ~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~--~gp~Ly~id~~G~~~-~~~~~aiG~gs~~a~~~Le~~~~~~~s~ 186 (233)
T 1yar_A 110 ENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQ--IGPRLFDCDPAGTIN-EYKATAIGSGKDAVVSFLEREYKENLPE 186 (233)
T ss_dssp HHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECS--SCEEEEEECTTCCEE-EBSEEEESTTHHHHHHHHHHHCCTTCCH
T ss_pred HHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeC--CCCEEEEECCCCCEE-eeeEEEEcCCcHHHHHHHHHHhccCCCH
Confidence 999999999998542 2389999999999996 789999999999999 6999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEEe
Q psy1779 160 EQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKI 199 (204)
Q Consensus 160 ~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~ 199 (204)
+||++++++||..+.++|. ++++++|++|+++|. ++.+
T Consensus 187 eea~~la~~al~~~~~~d~-s~~~i~v~vi~~~~~-~~~~ 224 (233)
T 1yar_A 187 KEAVTLGIKALKSSLEEGE-ELKAPEIASITVGNK-YRIY 224 (233)
T ss_dssp HHHHHHHHHHHHHTSCSSC-CCCCCEEEEEETTSC-CEEC
T ss_pred HHHHHHHHHHHHHHhhccC-CCCcEEEEEEECCCC-EEEC
Confidence 9999999999999999997 799999999999984 3443
No 29
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=2.5e-46 Score=302.27 Aligned_cols=193 Identities=14% Similarity=0.114 Sum_probs=179.7
Q ss_pred CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP 82 (204)
Q Consensus 3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 82 (204)
.++|+|+|||+++||||||+|+|.+.|.+. .++.+|||+|++|++++++|..+|++.|.++++.+++.|++++++++++
T Consensus 23 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 101 (242)
T 1ryp_E 23 IKLGSTAIGIATKEGVVLGVEKRATSPLLE-SDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINV 101 (242)
T ss_dssp HTTSCCEEEEECSSCEEEEEECCCSSTTBC-GGGCCCEEEEETTEEEEEEESGGGHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHcCCCEEEEEECCEEEEEEeecCCCcCcc-CccCCceEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 367999999999999999999999998777 8889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc--c-c------CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccC
Q psy1779 83 DTFAAIASWELYAR--K-L------TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFW 153 (204)
Q Consensus 83 ~~la~~l~~~l~~~--r-~------~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~ 153 (204)
+.+++++++++|.. + . .|||++++||||||+ +++|+||++||+|++. +++++|+|+|+++++++||+.|
T Consensus 102 ~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~-~~gp~Ly~idp~G~~~-~~~~~aiGsgs~~a~~~Le~~~ 179 (242)
T 1ryp_E 102 ESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDA-DDGYQLFHAEPSGTFY-RYNAKAIGSGSEGAQAELLNEW 179 (242)
T ss_dssp HHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEET-TTEEEEEEECTTSCEE-EBSEEEESTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeC-CCCCEEEEECCCCCEe-ccCEEEECCCCHHHHHHHHHhh
Confidence 99999999988763 1 1 389999999999996 5899999999999999 6999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEEec
Q psy1779 154 QPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIA 200 (204)
Q Consensus 154 ~~~ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~~ 200 (204)
+++||++||++++++||..+.+| ..++++++|++|+++|. ++.++
T Consensus 180 ~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~-~~~~~ 224 (242)
T 1ryp_E 180 HSSLTLKEAELLVLKILKQVMEE-KLDENNAQLSCITKQDG-FKIYD 224 (242)
T ss_dssp CTTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEEETTTE-EEECC
T ss_pred ccCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEECCCC-eEECC
Confidence 99999999999999999999999 67899999999999997 45544
No 30
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=4e-46 Score=300.85 Aligned_cols=192 Identities=14% Similarity=0.169 Sum_probs=178.9
Q ss_pred CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP 82 (204)
Q Consensus 3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 82 (204)
.++|+|+|||+++||||||+|+|.+.|... .++.+||++|++|+++++||..+|++.|.++++.+++.|+.++++++++
T Consensus 31 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 109 (241)
T 1iru_E 31 IKLGSTAIGIQTSEGVCLAVEKRITSPLME-PSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTV 109 (241)
T ss_dssp HTTSCCEEEEEETTEEEEEEECCCCCTTBC-TTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHcCCcEEEEEcCCEEEEEEecccCCcCcC-ccccceEEEEcCCEEEEEeeChHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 357999999999999999999999999877 8899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--Hhccc------CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCC
Q psy1779 83 DTFAAIASWEL--YARKL------TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQ 154 (204)
Q Consensus 83 ~~la~~l~~~l--~~~r~------~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~ 154 (204)
+.+++++++++ |+++. .|||++++||||||. ++|+||.+||+|++. +++++|+|+|++.++++||+.|+
T Consensus 110 ~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D~--~gp~Ly~idp~G~~~-~~~~~aiGsgs~~a~~~Le~~~~ 186 (241)
T 1iru_E 110 ESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDE--KGPQLFHMDPSGTFV-QCDARAIGSASEGAQSSLQELYH 186 (241)
T ss_dssp HHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEET--TEEEEEEECTTSCEE-EBSEEEESTTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhccccccccccccceEEEEEEEEeC--CCCEEEEECCCCcEE-ecceEEECCCcHHHHHHHHHHhc
Confidence 99999999998 43432 379999999999994 899999999999999 69999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEEec
Q psy1779 155 PGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIA 200 (204)
Q Consensus 155 ~~ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~~ 200 (204)
++||++||++++++||..+.++ ..++++++|++|+++|. ++.++
T Consensus 187 ~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~-~~~l~ 230 (241)
T 1iru_E 187 KSMTLKEAIKSSLIILKQVMEE-KLNATNIELATVQPGQN-FHMFT 230 (241)
T ss_dssp TTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEECSSSC-CEECC
T ss_pred cCCCHHHHHHHHHHHHHHHhhc-cCCCCCEEEEEEECCCC-eEECC
Confidence 9999999999999999999999 67899999999999997 45544
No 31
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=1.4e-45 Score=297.61 Aligned_cols=192 Identities=19% Similarity=0.255 Sum_probs=177.6
Q ss_pred CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP 82 (204)
Q Consensus 3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 82 (204)
.++|+|+|||+++||||||+|+|.+.|.+..+++.+|||+|++|++++++|..+|++.|.++++.+++.|++++++++++
T Consensus 25 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 104 (241)
T 1ryp_D 25 VKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTV 104 (241)
T ss_dssp HTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 35799999999999999999999999988777789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc--cc-CCCceeeEEEEEEeCCC-CceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccC---CC
Q psy1779 83 DTFAAIASWELYAR--KL-TSPLFINPIIAGFYPDS-GEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFW---QP 155 (204)
Q Consensus 83 ~~la~~l~~~l~~~--r~-~~P~~v~~lvaG~d~~~-~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~---~~ 155 (204)
+.+++++++++|.. +. .|||++++||||||+ + ++|+||++||+|++. +++++|+|+|++.++++||+.| ++
T Consensus 105 ~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~-~~~gp~Ly~idp~G~~~-~~~~~aiG~gs~~a~~~Le~~~~~~~~ 182 (241)
T 1ryp_D 105 EYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDP-RDDEPKLYQTEPSGIYS-SWSAQTIGRNSKTVREFLEKNYDRKEP 182 (241)
T ss_dssp HHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCT-TCCSCEEEEECTTSCEE-EBSEEEESTTHHHHHHHHHTTCCTTSC
T ss_pred HHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcC-CCCCeeEEEECCCCCEE-EeeeEEECCCcHHHHHHHHHhhhcccC
Confidence 99999999999874 22 289999999999996 4 899999999999999 6999999999999999999999 99
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEEec
Q psy1779 156 GLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIA 200 (204)
Q Consensus 156 ~ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~~ 200 (204)
+||++||++++++||..+.+ .++++++|++|+++|. ++.++
T Consensus 183 ~ms~eea~~l~~~al~~~~~---~sg~~i~v~vi~~~~~-~~~l~ 223 (241)
T 1ryp_D 183 PATVEECVKLTVRSLLEVVQ---TGAKNIEITVVKPDSD-IVALS 223 (241)
T ss_dssp CCSHHHHHHHHHHHHHHHHC---SCSTTEEEEEEETTTE-EEECC
T ss_pred CCCHHHHHHHHHHHHHHHhc---CCCCcEEEEEEECCCc-EEECC
Confidence 99999999999999999986 6789999999999973 44443
No 32
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=5.8e-46 Score=302.02 Aligned_cols=186 Identities=12% Similarity=0.128 Sum_probs=175.4
Q ss_pred CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHH
Q psy1779 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPD 83 (204)
Q Consensus 4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 83 (204)
++|+|+|||+++||||||+|+|.+.|.++. ++.+|||+|++|++++++|..+|++.|.++++.+++.|+++++++++++
T Consensus 31 ~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~-~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~ 109 (254)
T 1iru_G 31 ENSSTAIGIRCKDGVVFGVEKLVLSKLYEE-GSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLK 109 (254)
T ss_dssp HTSCCEEEEECSSBEEEEEEEECSCTTBCT-TTTCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred hcCCCEEEEEECCEEEEEEecccCCCCcCc-CcCCcEEEECCCEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 579999999999999999999999988874 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcc--c-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHH
Q psy1779 84 TFAAIASWELYARK--L-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPE 160 (204)
Q Consensus 84 ~la~~l~~~l~~~r--~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ 160 (204)
.+++++++++|.++ . .|||+|++||||||+ +++|+||++||+|++. +++++|+|+|++.++++||+.|+++||++
T Consensus 110 ~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~-~~gp~Ly~idp~G~~~-~~~~~aiGsgs~~a~~~Le~~~~~~ms~e 187 (254)
T 1iru_G 110 HLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSV-NDGAQLYMIDPSGVSY-GYWGCAIGKARQAAKTEIEKLQMKEMTCR 187 (254)
T ss_dssp HHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEET-TTEEEEEEECTTCCEE-EBSEEEESTTHHHHHHHHTTSCGGGCCHH
T ss_pred HHHHHHHHHHHHhccccccccceEEEEEEEEeC-CCCcEEEEEcCCCCEE-eeeeEEecCccHHHHHHHHHhccCCCCHH
Confidence 99999999997652 2 289999999999996 5899999999999999 69999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccCCCEEEEEEcCC
Q psy1779 161 QLFEVCSQVVIQACERDTKSGWGATVYVVEPD 192 (204)
Q Consensus 161 ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~ 192 (204)
||+++++++|..+.+++..++++++|++|+++
T Consensus 188 ea~~la~~al~~~~~~~~~~~~~iev~vi~~~ 219 (254)
T 1iru_G 188 DIVKEVAKIIYIVHDEVKDKAFELELSWVGEL 219 (254)
T ss_dssp HHHHHHHHHHHHHSCSSSSCCEEEEEEECBTT
T ss_pred HHHHHHHHHHHHHHhhccCCCCcEEEEEEEcC
Confidence 99999999999999988778889999999987
No 33
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=1.5e-45 Score=297.93 Aligned_cols=190 Identities=15% Similarity=0.199 Sum_probs=177.4
Q ss_pred CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHH
Q psy1779 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPD 83 (204)
Q Consensus 4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 83 (204)
++|+|+|||+++||||||+|+|.+.|.++.++ .+|||+|++|++++++|..+|++.|.++++.+++.|+++++++++++
T Consensus 28 ~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~-~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~ 106 (244)
T 1ryp_G 28 ENGTTSIGIKCNDGVVFAVEKLITSKLLVPQK-NVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIP 106 (244)
T ss_dssp HTSCCEEEEEETTEEEEEEEEECCCTTBCTTT-SCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred HCCCCEEEEEECCEEEEEEecccCCCCccccc-cCceEEecCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 57999999999999999999999998877554 59999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--cc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhcc---CCCCC
Q psy1779 84 TFAAIASWELYAR--KL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESF---WQPGL 157 (204)
Q Consensus 84 ~la~~l~~~l~~~--r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~---~~~~m 157 (204)
.++++++++++.. +. .|||++++||||||+ ++|+||++||+|++. +++++|+|+|++.++++||+. |+++|
T Consensus 107 ~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~--~gp~Ly~idp~G~~~-~~~~~aiG~gs~~a~~~Le~~~~~~~~~m 183 (244)
T 1ryp_G 107 AFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK--NGAHLYMLEPSGSYW-GYKGAATGKGRQSAKAELEKLVDHHPEGL 183 (244)
T ss_dssp HHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET--TEEEEEEECTTSCEE-EBSEEEESTTHHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHHHHhcccCccCceEEEEEEEEeC--CcCEEEEECCCCCEE-EeeEEEECCChHHHHHHHHHhHhhcCCCC
Confidence 9999999999543 32 289999999999995 789999999999999 699999999999999999997 99999
Q ss_pred CHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcC---CceEEE
Q psy1779 158 SPEQLFEVCSQVVIQACERDTKSGWGATVYVVEP---DKVTIR 197 (204)
Q Consensus 158 s~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~---~g~~~~ 197 (204)
|++||++++++||..+.++|..++++++|++|++ +|++..
T Consensus 184 s~eea~~la~~al~~~~~~d~~s~~~iev~vi~~~~~~g~~~~ 226 (244)
T 1ryp_G 184 SAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKF 226 (244)
T ss_dssp CHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETTTTTTSEEE
T ss_pred CHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEEecCCCCeeee
Confidence 9999999999999999999998999999999998 787754
No 34
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=6.7e-46 Score=302.90 Aligned_cols=192 Identities=19% Similarity=0.221 Sum_probs=178.9
Q ss_pred CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHH
Q psy1779 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPD 83 (204)
Q Consensus 4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 83 (204)
++|+|+|||+++||||||+|+|.+.+ ++..++.+|||+|++|++++++|..+|++.|.++++.+++.|+++++++++++
T Consensus 36 ~~Gtt~vgi~~~dgVVlaaD~r~~~~-li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~~~~i~v~ 114 (264)
T 3h4p_A 36 RRGTTAIGIACKDGVVLAVDRRITSK-LVKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIE 114 (264)
T ss_dssp HHSCCEEEECCSSEEEEEEECCCCST-TBCTTTCCCEEEEETTEEEEEEECSHHHHHHHTTHHHHHHHHHHTTCSCCCHH
T ss_pred hcCCcEEEEEECCEEEEEEecCccCC-ccccCccccEEEecCcEEEEeccchHHHHHHHHHHHHHHHhhHHhcCCCCCHH
Confidence 46999999999999999999999986 66788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--cc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHH
Q psy1779 84 TFAAIASWELYAR--KL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPE 160 (204)
Q Consensus 84 ~la~~l~~~l~~~--r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ 160 (204)
.++++++++++.. +. .|||+|++||||||+ ++|+||++||+|++. +++++|+|+|++.++++||+.|+++||++
T Consensus 115 ~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~--~gp~Ly~iDp~G~~~-~~~~~aiGsgs~~a~~~Le~~~~~~ms~e 191 (264)
T 3h4p_A 115 MLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDK--NEARLFETDPSGALI-EYKATAIGSGRPVVMELLEKEYRDDITLD 191 (264)
T ss_dssp HHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEET--TEEEEEEECTTCCCE-EESEEEESTTHHHHTTTHHHHCCTTCCSH
T ss_pred HHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeC--CcCEEEEECCCceEE-ecCeEEECCCHHHHHHHHHHhccCCCCHH
Confidence 9999999998643 32 389999999999996 789999999999999 69999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEEecc
Q psy1779 161 QLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIAT 201 (204)
Q Consensus 161 ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~~~ 201 (204)
||++++++||..+.++ .++++++|++|++++..++.++.
T Consensus 192 ea~~la~~al~~a~~~--~sg~~iev~vi~~~~~~~~~l~~ 230 (264)
T 3h4p_A 192 EGLELAITALTKANED--IKPENVDVCIITVKDAQFKKIPV 230 (264)
T ss_dssp HHHHHHHHHHHHHSSS--CCTTSEEEEEEETTTTEEEECCT
T ss_pred HHHHHHHHHHHHHHhc--cCCCeEEEEEEEeCCCcEEECCH
Confidence 9999999999999987 68999999999998877777654
No 35
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=4.2e-45 Score=293.86 Aligned_cols=188 Identities=15% Similarity=0.169 Sum_probs=175.9
Q ss_pred ceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Q psy1779 7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFA 86 (204)
Q Consensus 7 ~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 86 (204)
||+|||+++||||||+|+|.+.|.++..++.+||++|++|+++++||..+|++.|.++++.+++.|+++++++++++.++
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 80 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcc--cCCCceeeEEEEEEeCCCCc-----eEEEEEcCCCCeeeec--ceEEEccchhhHHHhhhccCCCCC
Q psy1779 87 AIASWELYARK--LTSPLFINPIIAGFYPDSGE-----VFLSTLDMAGCETRKT--DFVAGGSAQNMIMGIGESFWQPGL 157 (204)
Q Consensus 87 ~~l~~~l~~~r--~~~P~~v~~lvaG~d~~~~~-----p~Ly~id~~G~~~~~~--~~~a~G~g~~~~~~~Le~~~~~~m 157 (204)
+.+++++|.++ ..|||++++||||||+ +++ |+||++||+|++. ++ +++|+|+|+++++++||+.|+++|
T Consensus 81 ~~l~~~~~~~~~~~~rp~~v~~lvaG~D~-~~g~~~~~p~Ly~idp~G~~~-~~~~~~~aiGsgs~~a~~~Le~~~~~~m 158 (235)
T 1q5q_H 81 NRLASMVRGNLGAAMQGLAVVPLLVGYDL-DADDESRAGRIVSYDVVGGRY-EERAGYHAVGSGSLFAKSALKKIYSPDS 158 (235)
T ss_dssp HHHHHHHHTTHHHHTTTCCEEEEEEEECT-TCSSTTSCEEEEEECTTSCEE-ECCSSEEEESTTHHHHHHHHHHHCCTTC
T ss_pred HHHHHHHHHHHHhhhcccceEEEEEEEEC-CCCccCCCCEEEEECCCCceE-EeCCCeEEECCCHHHHHHHHHhhcCCCC
Confidence 99999998753 2389999999999997 546 9999999999999 68 999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhccccCCC--E-----EEEEEcCCceEE
Q psy1779 158 SPEQLFEVCSQVVIQACERDTKSGWG--A-----TVYVVEPDKVTI 196 (204)
Q Consensus 158 s~~ea~~~~~~~l~~~~~~d~~~~~~--~-----~v~~i~~~g~~~ 196 (204)
|++||++++++||..+.++|..+++. + +|++|+++|++.
T Consensus 159 s~eeA~~la~~al~~a~~~d~~sg~~~~i~~~~~ev~vi~~~g~~~ 204 (235)
T 1q5q_H 159 DEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVH 204 (235)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHHHHhhCcccCCcccccccccEEEEEeCCCeEE
Confidence 99999999999999999999887642 2 999999999654
No 36
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=2.9e-45 Score=302.74 Aligned_cols=192 Identities=15% Similarity=0.163 Sum_probs=179.7
Q ss_pred CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP 82 (204)
Q Consensus 3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 82 (204)
.++|+|+|||+++||||||+|+|.+.|.++..++.+|||+|++|++++++|..+|++.|.++++.+++.|++++++++++
T Consensus 62 v~~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g~~isv 141 (294)
T 1q5r_H 62 APHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTF 141 (294)
T ss_dssp SCBCCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HhcCceEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhCCCCCH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccc--CCCceeeEEEEEEeCCCCc-----eEEEEEcCCCCeeeec--ceEEEccchhhHHHhhhccC
Q psy1779 83 DTFAAIASWELYARKL--TSPLFINPIIAGFYPDSGE-----VFLSTLDMAGCETRKT--DFVAGGSAQNMIMGIGESFW 153 (204)
Q Consensus 83 ~~la~~l~~~l~~~r~--~~P~~v~~lvaG~d~~~~~-----p~Ly~id~~G~~~~~~--~~~a~G~g~~~~~~~Le~~~ 153 (204)
+.+++++++++|.++. .|||+|++||||||+ +++ |+||++||+|+++ ++ +|+|+|+|+++++++||+.|
T Consensus 142 ~~la~~la~~l~~~~~~~~rp~~v~lLvaG~D~-~~g~~~~~p~Ly~iDp~G~~~-e~~~~~~AiGsgs~~a~~~Le~~y 219 (294)
T 1q5r_H 142 DGKANRLASMVRGNLGAAMQGLAVVPLLVGYDL-DADDESRAGRIVSYDVVGGRY-EERAGYHAVGSGSLFAKSALKKIY 219 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCEEEEEEEECT-TCSCTTSCEEEEEECSSSCEE-ECCSSEEEESTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhhhcCCcceEEEEEEEeC-CCCcCCCCCEEEEECCCCeEE-ecCCCeEEEecCcHHHHHHHHHhc
Confidence 9999999999987532 489999999999997 546 9999999999999 68 89999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhccccCCC--E-----EEEEEcCCceEE
Q psy1779 154 QPGLSPEQLFEVCSQVVIQACERDTKSGWG--A-----TVYVVEPDKVTI 196 (204)
Q Consensus 154 ~~~ms~~ea~~~~~~~l~~~~~~d~~~~~~--~-----~v~~i~~~g~~~ 196 (204)
+++||++||++++++||..+.++|..+++. + +|++|+++|++.
T Consensus 220 ~~~ms~eEAi~la~~aL~~a~~rD~~sG~~~~ir~i~~ev~vI~~~g~~~ 269 (294)
T 1q5r_H 220 SPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVH 269 (294)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEEEE
T ss_pred cCCCCHHHHHHHHHHHHHHHHhhccccCCchhhcccCCEEEEEECCCEEE
Confidence 999999999999999999999999887643 5 999999999654
No 37
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=2.5e-45 Score=297.31 Aligned_cols=184 Identities=15% Similarity=0.196 Sum_probs=172.9
Q ss_pred CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHH
Q psy1779 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPD 83 (204)
Q Consensus 4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 83 (204)
++|+|+|||+++||||||+|+|.+.+ ++..++.+|||+|++|++++++|..+|++.|.++++.+++.|+++++++++++
T Consensus 27 ~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~ 105 (248)
T 1iru_D 27 KKGSTAVGVRGRDIVVLGVEKKSVAK-LQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVE 105 (248)
T ss_dssp HTSCCEEEECCSSEEEEEECCCCCCS-SSCGGGGCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCCCHH
T ss_pred HcCCCEEEEEeCCEEEEEEeeccccc-CccCCCCCcEEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 57999999999999999999999987 56678899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--cc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCC--C
Q psy1779 84 TFAAIASWELYAR--KL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGL--S 158 (204)
Q Consensus 84 ~la~~l~~~l~~~--r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~m--s 158 (204)
.++++++++++.. +. .|||++++||||||+ +++|+||++||+|++. +++++|+|+|++.++++||+.|+++| |
T Consensus 106 ~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~-~~gp~Ly~idp~G~~~-~~~~~aiG~gs~~a~~~Le~~~~~~m~~s 183 (248)
T 1iru_D 106 YITRYIASLKQRYTQSNGRRPFGISALIVGFDF-DGTPRLYQTDPSGTYH-AWKANAIGRGAKSVREFLEKNYTDEAIET 183 (248)
T ss_dssp HHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECS-SSCEEEEEECTTSCEE-EBSEEEESTTHHHHHHHHTTTCCSSTTCS
T ss_pred HHHHHHHHHHHHHhccCCcccccEEEEEEEEeC-CCCcEEEEEcCCCcEE-EeeEEEECCCcHHHHHHHHHhhcccccCC
Confidence 9999999999654 32 289999999999996 5799999999999999 69999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCc
Q psy1779 159 PEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDK 193 (204)
Q Consensus 159 ~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g 193 (204)
++||++++++||..+.+ .++++++|++|+++|
T Consensus 184 ~eea~~la~~al~~~~~---~sg~~i~v~vi~~~g 215 (248)
T 1iru_D 184 DDLTIKLVIKALLEVVQ---SGGKNIELAVMRRDQ 215 (248)
T ss_dssp HHHHHHHHHHHHHTTSC---TTSTTCCEEEEESSS
T ss_pred HHHHHHHHHHHHHHHHc---CCCCcEEEEEEECCC
Confidence 99999999999999987 468999999999998
No 38
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=4e-45 Score=301.12 Aligned_cols=193 Identities=15% Similarity=0.190 Sum_probs=177.8
Q ss_pred CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHH
Q psy1779 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPD 83 (204)
Q Consensus 4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 83 (204)
++|+|+|||+++||||||+|+|.+.|.++.+ +.+|||+|++||+|+++|+.+|++.|.++++.+++.|+++++++++++
T Consensus 32 ~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~~-~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~e~~~y~~~~~~~i~v~ 110 (288)
T 3nzj_F 32 ENGTTSIGIKCNDGVVFAVEKLITSKLLVPQ-KNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIP 110 (288)
T ss_dssp HTSCCEEEEEETTEEEEEEEEEECCTTBCTT-CSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred hcCCcEEEEEECCEEEEEEcCCcccCCcccc-ccceEEEEcCCEEEEecCcHHHHHHHHHHHHHHHHHHHHHcCCcCCHH
Confidence 5799999999999999999999999877654 779999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--c-cCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhcc---CCCCC
Q psy1779 84 TFAAIASWELYAR--K-LTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESF---WQPGL 157 (204)
Q Consensus 84 ~la~~l~~~l~~~--r-~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~---~~~~m 157 (204)
.+++++++++|.+ + ..|||+|++||||||+ ++|+||++||+|++. +++++|+|+|++.++++||+. |+++|
T Consensus 111 ~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~--~Gp~Ly~iDp~G~~~-~~~~~aiGsgs~~a~~~Lek~~~~~~~~m 187 (288)
T 3nzj_F 111 AFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK--NGAHLYMLEPSGSYW-GYKGAATGKGRQSAKAELEKLVDHHPEGL 187 (288)
T ss_dssp HHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET--TEEEEEEECTTSCEE-EBSEEEESTTHHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHHHHHHhccCCCceEEEEEEEEeC--CCCEEEEECCCCCEE-EcCEEEEcCcHHHHHHHHHHhccccCCCC
Confidence 9999999999654 2 1289999999999996 779999999999999 699999999999999999999 99999
Q ss_pred CHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcC--CceEEEEec
Q psy1779 158 SPEQLFEVCSQVVIQACERDTKSGWGATVYVVEP--DKVTIRKIA 200 (204)
Q Consensus 158 s~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~--~g~~~~~~~ 200 (204)
|++||++++++||..+.+++..++.+++|++|++ ++..++.+|
T Consensus 188 s~eEAv~la~~al~~a~~~~~~~~~~iev~vIt~~~~~~~~~~vp 232 (288)
T 3nzj_F 188 SAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVK 232 (288)
T ss_dssp CHHHHHHHHHHHHHHHGGGGTTSEEEEEEEEEETTTSTTCCEECC
T ss_pred CHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEecCCCceEEECC
Confidence 9999999999999999999988888999999999 444445544
No 39
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=3.3e-45 Score=302.14 Aligned_cols=195 Identities=17% Similarity=0.167 Sum_probs=160.8
Q ss_pred CCCCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCC
Q psy1779 1 MSLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPI 80 (204)
Q Consensus 1 ~~~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 80 (204)
|+.++|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|++|++++++|..+|++.|.++++.+++.|++.+++++
T Consensus 52 ~~v~~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~y~~~~~~~i 131 (291)
T 2jay_A 52 AQLPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPL 131 (291)
T ss_dssp ------CCEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred ccccCCcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeCCcEEEEEcccHHHHHHHHHHHHHHHHHhhhhcCCCC
Confidence 34678999999999999999999999999888889999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhccc--CCCceeeEEEEEEeCCCCc-----eEEEEEcCCCCee-eecceEEEccchhhHHHhhhcc
Q psy1779 81 SPDTFAAIASWELYARKL--TSPLFINPIIAGFYPDSGE-----VFLSTLDMAGCET-RKTDFVAGGSAQNMIMGIGESF 152 (204)
Q Consensus 81 ~~~~la~~l~~~l~~~r~--~~P~~v~~lvaG~d~~~~~-----p~Ly~id~~G~~~-~~~~~~a~G~g~~~~~~~Le~~ 152 (204)
+++.+++.+++++|.++. .|||+|++||||||+ +++ |+||++||+|+++ ++++|+|+|+|+++++++||+.
T Consensus 132 ~v~~la~~la~~l~~~~~~~~rpf~v~~lvaG~D~-~g~~~~~~p~Ly~iDp~G~~~e~~~~~~aiGsgs~~a~~~Le~~ 210 (291)
T 2jay_A 132 TFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDI-HASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKL 210 (291)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHTCCCEEEEEEECT-TCSCSTTCEEEEEECTTSCEEECSSSEEEESTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhhhhccccceeEEEEEEeC-CCCcCCCCCEEEEECCCCcEEecCCCEEEEecCHHHHHHHHHHh
Confidence 999999999999988642 279999999999997 555 9999999999987 4589999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhccccCCC-------EEEEEEcCCceEE
Q psy1779 153 WQPGLSPEQLFEVCSQVVIQACERDTKSGWG-------ATVYVVEPDKVTI 196 (204)
Q Consensus 153 ~~~~ms~~ea~~~~~~~l~~~~~~d~~~~~~-------~~v~~i~~~g~~~ 196 (204)
|+++||++||++++++||..+.++|..+++. ++|++|+++|++.
T Consensus 211 ~~~~ms~eEAi~la~~aL~~a~~~D~~sg~~e~vr~~~~~v~vi~~dg~~~ 261 (291)
T 2jay_A 211 YSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADGAVD 261 (291)
T ss_dssp GGGCCSHHHHHHHHHHHHHHC----------------CCEEEEEETTEEEE
T ss_pred cCCCCCHHHHHHHHHHHHHHHHhhCCCCCCcccccccCCEEEEEECCCeEE
Confidence 9999999999999999999999999887643 1699999998654
No 40
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=6.8e-45 Score=292.30 Aligned_cols=183 Identities=14% Similarity=0.129 Sum_probs=170.7
Q ss_pred CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHH
Q psy1779 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPD 83 (204)
Q Consensus 4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 83 (204)
++|+|+|||+++||||||+|+|.+.+.. .+.+||++|++|+++++||..+|++.|.++++.+++.|+++++++++++
T Consensus 29 ~~Gtt~vgi~~~dgVvlaaD~r~~~~l~---~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~ 105 (233)
T 1ryp_F 29 KQGSVTVGLRSNTHAVLVALKRNADELS---SYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVE 105 (233)
T ss_dssp HTSCCEEEEECSSEEEEEEECCCSSTTB---CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HcCCCEEEEEcCCEEEEEEEeccccccc---cccCcEEEEcCCEEEEEEechHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 4799999999999999999999988743 4789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh--ccc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCC--CC-
Q psy1779 84 TFAAIASWELYA--RKL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQP--GL- 157 (204)
Q Consensus 84 ~la~~l~~~l~~--~r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~--~m- 157 (204)
.++++++++++. ++. .|||++++||||||+ ++|+||++||+|++. +++++|+|+|++.++++||+.|++ +|
T Consensus 106 ~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~--~gp~Ly~idp~G~~~-~~~~~aiG~gs~~a~~~Le~~~~~~~~m~ 182 (233)
T 1ryp_F 106 RAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDK--SGAHLLEFQPSGNVT-ELYGTAIGARSQGAKTYLERTLDTFIKID 182 (233)
T ss_dssp HHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET--TEEEEEEECTTSCEE-EESEEEESTTHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhcccCCcCcceEEEEEEEeC--CcCEEEEECCCCCee-eeeEEEECCCcHHHHHHHHHHhccccccC
Confidence 999999999954 332 389999999999996 789999999999999 699999999999999999999998 99
Q ss_pred -CHHHHHHHHHHHHHHHHhhc-cccCCCEEEEEEcCCc
Q psy1779 158 -SPEQLFEVCSQVVIQACERD-TKSGWGATVYVVEPDK 193 (204)
Q Consensus 158 -s~~ea~~~~~~~l~~~~~~d-~~~~~~~~v~~i~~~g 193 (204)
|++||+++++++|..+. +| ..++++++|++|++++
T Consensus 183 ~s~eea~~~a~~al~~~~-~d~~~s~~~i~v~vi~~~~ 219 (233)
T 1ryp_F 183 GNPDELIKAGVEAISQSL-RDESLTVDNLSIAIVGKDT 219 (233)
T ss_dssp SCHHHHHHHHHHHHTTSC-CSSCCCTTTEEEEEEETTE
T ss_pred CCHHHHHHHHHHHHHHHh-hcccCCCCcEEEEEEECCC
Confidence 99999999999999999 77 5789999999999994
No 41
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=2.3e-44 Score=291.42 Aligned_cols=186 Identities=15% Similarity=0.097 Sum_probs=172.9
Q ss_pred CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHH
Q psy1779 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPD 83 (204)
Q Consensus 4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 83 (204)
++|+|+|||+++||||||+|+|.+.+ ++..++.+|||+|++|++++++|..+|++.|.++++.+++.|+++++++++++
T Consensus 32 ~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~ 110 (246)
T 1j2p_A 32 KRGATAIGIKCKEGVILIADKRVGSK-LLEKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITVK 110 (246)
T ss_dssp HTSCCEEEEEETTEEEEEEECCCSCT-TBCGGGCCSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCCCHH
T ss_pred HcCCcEEEEEECCEEEEEEeccCCcc-ccccCccCcEEEECCCEEEEEeEccHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 57999999999999999999999986 45578899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--hccc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHH
Q psy1779 84 TFAAIASWELY--ARKL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPE 160 (204)
Q Consensus 84 ~la~~l~~~l~--~~r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ 160 (204)
.++++++++++ +++. .|||++++|||||| ++|+||.+||+|++. +++++|+|+|++.++++||+.|+++||++
T Consensus 111 ~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D---~gp~Ly~idp~G~~~-~~~~~aiGsgs~~a~~~Le~~~~~~ms~e 186 (246)
T 1j2p_A 111 ELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN---EVPKLYETDPSGALL-EYKATAIGMGRMAVTEFFEKEYRDDLSFD 186 (246)
T ss_dssp HHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES---SSEEEEEECTTCCEE-EBSEEEESTTHHHHHHHHHHHCCTTCCHH
T ss_pred HHHHHHHHHHHHHhcccCcccccEEEEEEEEC---CCCEEEEECCCceEE-eeeEEEECCCcHHHHHHHHHHhccCCCHH
Confidence 99999999994 4443 28999999999998 689999999999999 69999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccCCCEEEEEEc-CC-ceE
Q psy1779 161 QLFEVCSQVVIQACERDTKSGWGATVYVVE-PD-KVT 195 (204)
Q Consensus 161 ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~-~~-g~~ 195 (204)
||++++++||..+.++ ..++++++|++|+ ++ |.+
T Consensus 187 ea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~ 222 (246)
T 1j2p_A 187 DAMVLGLVAMGLSIES-ELVPENIEVGYVKVDDRTFK 222 (246)
T ss_dssp HHHHHHHHHHHHHHTS-CCCGGGEEEEEEETTTCCCE
T ss_pred HHHHHHHHHHHHHhhc-cCCCCcEEEEEEEcCCCceE
Confidence 9999999999999998 7889999999999 64 443
No 42
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=2.2e-44 Score=291.15 Aligned_cols=187 Identities=11% Similarity=0.106 Sum_probs=165.0
Q ss_pred CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcC-CCCCH
Q psy1779 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQ-SPISP 82 (204)
Q Consensus 4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~~~~ 82 (204)
++|+|+|||+++||||||+|+| +++.+|||+|++|++|+++|+.+|++.|.+.++.+++.|++.++ +++++
T Consensus 25 ~~GtT~vgi~~kdgVVlaadkr--------~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~l~~~~~~~~~i~v 96 (248)
T 3mi0_A 25 ARAKSVVALAYAGGVLFVAENP--------SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQFADTRGYAYDRRDVTG 96 (248)
T ss_dssp HTSCCEEEEEETTEEEEEEECC--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGCCH
T ss_pred hCCCcEEEEEeCCEEEEEEeCC--------CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCH
Confidence 5799999999999999999998 34789999999999999999999999999999999999999999 89999
Q ss_pred HHHHHHHHHHH---HhcccCCCceeeEEEEEEeC--CCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCC
Q psy1779 83 DTFAAIASWEL---YARKLTSPLFINPIIAGFYP--DSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGL 157 (204)
Q Consensus 83 ~~la~~l~~~l---~~~r~~~P~~v~~lvaG~d~--~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~m 157 (204)
+.+++++++.+ |+++. |||+|++||||||+ ++++|+||++||+|++..+++++|+|+|++.++++||+.|+++|
T Consensus 97 ~~la~~l~~~l~q~yt~~~-rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~~~e~~~~a~Gsgs~~a~~~Le~~y~~~m 175 (248)
T 3mi0_A 97 RQLANVYAQTLGTIFTEQA-KPYEVELCVAEVAHYGETKRPELYRITYDGSIADEPHFVVMGGTTEPIANALKESYAENA 175 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSS-SCCCEEEEEEECCCTTCCCCCEEEEECTTSCEEEESSEEEESSCHHHHHHHHHHHCCTTC
T ss_pred HHHHHHHHHHHHHHhccCC-CCceEEEEEEEEcCCCCCCCCEEEEECCCeEEeecccEEEECccHHHHHHHHHhhcCCCC
Confidence 99999999553 55544 89999999999995 23799999999999999229999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH-------hhccccCCCEEEEEEcCCc--eEEEEec
Q psy1779 158 SPEQLFEVCSQVVIQAC-------ERDTKSGWGATVYVVEPDK--VTIRKIA 200 (204)
Q Consensus 158 s~~ea~~~~~~~l~~~~-------~~d~~~~~~~~v~~i~~~g--~~~~~~~ 200 (204)
|++||++++++||..+. +++ .++.+++|++|+++| .+++.++
T Consensus 176 t~eeai~la~~aL~~~~~~~~~~~~~~-~~~~~iev~vv~~~g~~~~f~~l~ 226 (248)
T 3mi0_A 176 SLTDALRIAVAALRAGSADTSGGDQPT-LGVASLEVAVLDANRPRRAFRRIT 226 (248)
T ss_dssp CHHHHHHHHHHHHHHC-------------CCTTEEEEEEETTSSSCCEEECC
T ss_pred CHHHHHHHHHHHHHHHHhhcccCcccc-cCCCcEEEEEEECCCCcccEEECC
Confidence 99999999999999999 565 678999999999997 3445443
No 43
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=1.2e-44 Score=295.57 Aligned_cols=184 Identities=12% Similarity=0.064 Sum_probs=172.4
Q ss_pred CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHH
Q psy1779 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPD 83 (204)
Q Consensus 4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 83 (204)
++|+|+|||+++||||||+|+|.+.+. .++.+|||+|++|++++++|..+|++.|.++++.+++.|+++++++++++
T Consensus 30 ~~Gtt~vgi~~~dgVVlaaD~r~~~gl---~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~i~v~ 106 (263)
T 1iru_F 30 KQGSATVGLKSKTHAVLVALKRAQSEL---AAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVS 106 (263)
T ss_dssp HHSCCEEEEECSSEEEEEEECCCSSTT---BCCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred HcCCcEEEEEeCCEEEEEEeccccccc---ccchhcEEEEcCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHH
Confidence 469999999999999999999999874 24789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--c-cCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCC--CCC
Q psy1779 84 TFAAIASWELYAR--K-LTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQP--GLS 158 (204)
Q Consensus 84 ~la~~l~~~l~~~--r-~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~--~ms 158 (204)
.+++++++++|.. + ..|||+|++||||||+ ++|+||++||+|++. +++++|+|+|++.++++||+.|++ +||
T Consensus 107 ~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~--~gp~Ly~idp~G~~~-~~~~~aiGsgs~~a~~~Le~~~~~~~~ms 183 (263)
T 1iru_F 107 RLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDD--MGPHIFQTCPSANYF-DCRAMSIGARSQSARTYLERHMSEFMECN 183 (263)
T ss_dssp HHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET--TEEEEEEECSSSCEE-EESEEEESTTHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhhcccccccceEEEEEEEEcC--CCCEEEEECCCCCEE-EeeEEEcCcccHHHHHHHHHHhcccCCCC
Confidence 9999999999743 2 2389999999999996 789999999999999 699999999999999999999998 999
Q ss_pred HHHHHHHHHHHHHHHHhhc-cccCCCEEEEEEcCCc
Q psy1779 159 PEQLFEVCSQVVIQACERD-TKSGWGATVYVVEPDK 193 (204)
Q Consensus 159 ~~ea~~~~~~~l~~~~~~d-~~~~~~~~v~~i~~~g 193 (204)
++||++++++||..+.++| ..++++++|++|++++
T Consensus 184 ~eea~~la~~al~~~~~rd~~~sg~~iev~vi~~~~ 219 (263)
T 1iru_F 184 LNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDL 219 (263)
T ss_dssp HHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTE
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCcEEEEEEECCC
Confidence 9999999999999999999 4789999999999995
No 44
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=4.5e-44 Score=290.33 Aligned_cols=185 Identities=14% Similarity=0.144 Sum_probs=172.5
Q ss_pred CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHh-hHHhcCCCCCH
Q psy1779 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTAN-YVASEQSPISP 82 (204)
Q Consensus 4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~-~~~~~~~~~~~ 82 (204)
++|+|+|||+++||||||+|+|.+ +.++..++.+||++|++|+++++||..+|++.|.++++.+++. |+..++.++++
T Consensus 29 ~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~ 107 (250)
T 1ryp_B 29 KQGVTSLGIKATNGVVIATEKKSS-SPLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPT 107 (250)
T ss_dssp HTSCCEEEEEETTEEEEEEECCCS-CSSBCGGGCCSSEEEETTEEEEEEECHHHHHHHHHHHHHHHHHTTHHHHSSCCCH
T ss_pred HcCCcEEEEEECCEEEEEEeccCC-CccccCcccCceEEECCCEEEEeeeCHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 579999999999999999999997 7788888999999999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHHHHHHhc----ccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCC
Q psy1779 83 DTFAAIASWELYAR----KLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLS 158 (204)
Q Consensus 83 ~~la~~l~~~l~~~----r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms 158 (204)
+.+++.++++++.. +. |||++++||||||+ +++|+||++||+|++. +++++|+|+|++.++++||+.|+++||
T Consensus 108 ~~l~~~~a~~~~~~~~~~~~-rp~~v~~lvaG~D~-~~gp~Ly~idp~G~~~-~~~~~aiGsgs~~a~~~Le~~~~~~ms 184 (250)
T 1ryp_B 108 KLLVSEVAKIMQEATQSGGV-RPFGVSLLIAGHDE-FNGFSLYQVDPSGSYF-PWKATAIGKGSVAAKTFLEKRWNDELE 184 (250)
T ss_dssp HHHHHHHHHHHHHTTTSBTB-CCCCEEEEEEEEET-TTEEEEEEECTTSCEE-EBSEEEESTTHHHHHHHHHHHCCTTCC
T ss_pred HHHHHHHHHHHHHHHhcCCc-ccceEEEEEEEEcC-CCCcEEEEECCCCCEE-eeceeEecCccHHHHHHHHHHhccCCC
Confidence 99988888887442 23 89999999999997 6799999999999999 699999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCc
Q psy1779 159 PEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDK 193 (204)
Q Consensus 159 ~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g 193 (204)
++||++++++||..+.+++ .++++++|++|++++
T Consensus 185 ~eea~~la~~al~~~~~~~-~sg~~i~v~vi~~~~ 218 (250)
T 1ryp_B 185 LEDAIHIALLTLKESVEGE-FNGDTIELAIIGDEN 218 (250)
T ss_dssp HHHHHHHHHHHHHHHCCSC-CSTTTEEEEEECSCC
T ss_pred HHHHHHHHHHHHHHHhccc-cCCCCEEEEEEEccc
Confidence 9999999999999999986 579999999999973
No 45
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=2.4e-43 Score=287.24 Aligned_cols=180 Identities=13% Similarity=0.120 Sum_probs=163.8
Q ss_pred CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcC-CCCCH
Q psy1779 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQ-SPISP 82 (204)
Q Consensus 4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~~~~ 82 (204)
++|+|+|||+++||||||+|+| +++.+|||+|++||+++++|..+|++.|.++++.+++.|.+.++ +++++
T Consensus 25 ~~Gtt~vgi~~~dgVVlaaD~r--------s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~i~v 96 (259)
T 1q5q_A 25 ARGRSVVVLTFRDGVLFVAENP--------STALHKVSELYDRLGFAAVGKYNEFENLRRAGIVHADMRGYSYDRRDVTG 96 (259)
T ss_dssp HTSCCEEEEECSSEEEEEECCS--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGCCH
T ss_pred hcCCcEEEEEeCCEEEEEEecC--------CCCcCcEEEeCCCEEEEEccCHHHHHHHHHHHHHHHHHHHHHcCCcCCCH
Confidence 5799999999999999999998 35789999999999999999999999999999999999998887 59999
Q ss_pred HHHHHHHHHHH---HhcccCCCceeeEEEEEEe--CCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCC
Q psy1779 83 DTFAAIASWEL---YARKLTSPLFINPIIAGFY--PDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGL 157 (204)
Q Consensus 83 ~~la~~l~~~l---~~~r~~~P~~v~~lvaG~d--~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~m 157 (204)
+.+++++++++ |+.+. |||+|++|||||| +++++|+||++||+|++.++++++|+|++++.++++||+.|+++|
T Consensus 97 ~~la~~l~~~l~q~yt~~~-rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~m 175 (259)
T 1q5q_A 97 RSLANAYAQTLGTIFTEQP-KPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADL 175 (259)
T ss_dssp HHHHHHHHHHHHHHHHHSS-SCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSEEEESSSHHHHHHHHHHHCCTTC
T ss_pred HHHHHHHHHHHHHHhccCC-CCceEEEEEEEEcccCCCCCCEEEEECCCCceeeCCCEEEECCChHHHHHHHHhhccCCC
Confidence 99999999963 66555 8999999999999 213789999999999999558999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH-----hhccccCCCEEEEEEcCCc
Q psy1779 158 SPEQLFEVCSQVVIQAC-----ERDTKSGWGATVYVVEPDK 193 (204)
Q Consensus 158 s~~ea~~~~~~~l~~~~-----~~d~~~~~~~~v~~i~~~g 193 (204)
|++||++++++||..+. +||. ++++++|++|+++|
T Consensus 176 s~eea~~la~~al~~~~~~~~~~rd~-sg~~iev~vi~~~~ 215 (259)
T 1q5q_A 176 DLEAAVGIAVNALRQGGAGEGEKRNV-DVASLEVAVLDQSR 215 (259)
T ss_dssp CHHHHHHHHHHHHTTCC--------C-CSSCSEEEEEETTS
T ss_pred CHHHHHHHHHHHHHHHhhcccccccC-CCCcEEEEEEECCC
Confidence 99999999999999999 8998 89999999999995
No 46
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=100.00 E-value=3.6e-39 Score=249.46 Aligned_cols=173 Identities=17% Similarity=0.107 Sum_probs=153.2
Q ss_pred CCCCceEEEEEeCCEEEEEEecccccCce-eeecCCCeEEEe-eCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCC
Q psy1779 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDF-TIAEYENKVHQM-SPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPI 80 (204)
Q Consensus 3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~-~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 80 (204)
+.+|+|+|||+++||||||+|+|.+.|.+ +.+++.+|||+| ++|++++++|..+|++.|.++++.+++.|+ + .
T Consensus 2 ~~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g--~ 76 (180)
T 2z3b_A 2 SFHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G--N 76 (180)
T ss_dssp CBCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T--C
T ss_pred CCCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C--C
Confidence 57899999999999999999999999888 999999999999 999999999999999999999999999987 3 2
Q ss_pred CHHHHHHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeee-cceEEEccchhhHHHhhhccCCC---C
Q psy1779 81 SPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRK-TDFVAGGSAQNMIMGIGESFWQP---G 156 (204)
Q Consensus 81 ~~~~la~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~-~~~~a~G~g~~~~~~~Le~~~~~---~ 156 (204)
.+..++ .+++.+++.+..|||++++|+| | +|+||++||+|++.+. +++.|+|+|+++++++||+.|++ +
T Consensus 77 ~~~~~~-~l~~~~~~~~~~rp~~~~~lva--d----~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~~~ 149 (180)
T 2z3b_A 77 LKRAAV-ELAKEWRSDKVLRKLEAMLIVM--N----QDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGES 149 (180)
T ss_dssp HHHHHH-HHHHHHHHCTTGGGCCCCEEEE--C----SSCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHHHHHGGG
T ss_pred hHHHHH-HHHHHHHhhhCcCcceEEEEEE--c----CCeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhhhccCCC
Confidence 333443 4566665555448999999999 4 5899999999999832 59999999999999999999998 9
Q ss_pred CCHHHHHHHHHHHHHHHHhhccccCCCEEEEEEc
Q psy1779 157 LSPEQLFEVCSQVVIQACERDTKSGWGATVYVVE 190 (204)
Q Consensus 157 ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~ 190 (204)
||.|| ++.+||+.+.+||..++++++|.+|+
T Consensus 150 mt~ee---l~~~al~~a~~rd~~sg~~i~v~~i~ 180 (180)
T 2z3b_A 150 MSASE---IARAALETAGEICVYTNDQIILEELE 180 (180)
T ss_dssp CCHHH---HHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred CCHHH---HHHHHHHHHHHhcCccCCeEEEEEEC
Confidence 99999 46799999999999999999999983
No 47
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=100.00 E-value=3.3e-38 Score=242.84 Aligned_cols=168 Identities=14% Similarity=0.082 Sum_probs=152.9
Q ss_pred ceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEe-eCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHH
Q psy1779 7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQM-SPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTF 85 (204)
Q Consensus 7 ~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 85 (204)
+|+|||+++||||||+|+|.+.|.++.+++.+|||+| ++|++++++|..+|++.|.++++.+++.|+. ++...
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~~~~~ 74 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------HLLKS 74 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------CHHHH
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------cHHHH
Confidence 6899999999999999999999989999999999999 9999999999999999999999999998875 45666
Q ss_pred HHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecc---eEEEccchhhHHHhhhccCC-CCCCHHH
Q psy1779 86 AAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTD---FVAGGSAQNMIMGIGESFWQ-PGLSPEQ 161 (204)
Q Consensus 86 a~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~---~~a~G~g~~~~~~~Le~~~~-~~ms~~e 161 (204)
+..+++.++++|..||+ +++++|+| +|+||++||+|++. +++ +.|+|+|+++++++||+.|+ ++||.+
T Consensus 75 ~~~l~~~~~~~~~~r~~--~~~l~g~d----~p~Ly~~d~~G~~~-~~~~~~~~a~Gsgs~~a~~~le~~~~~~~mt~~- 146 (174)
T 1g3k_A 75 AVELAKDWRTDRALRKL--EAMLIVAD----EKESLIITGIGDVV-QPEEDQILAIGSGGNYALSAARALVENTELSAH- 146 (174)
T ss_dssp HHHHHHHHHHSTTGGGC--CCEEEEEC----SSCEEEEETTTEEE-CCCTTCEEEESTTHHHHHHHHHHHHHHCCCCHH-
T ss_pred HHHHHHHHHhccCcCcc--eEEEEEEC----CCEEEEEcCCCcEE-ecCCCcEEEEcccHHHHHHHHHHhcccCCCCHH-
Confidence 77788888877664675 56788887 59999999999999 677 99999999999999999999 999955
Q ss_pred HHHHHHHHHHHHHhhccccCCCEEEEEEc
Q psy1779 162 LFEVCSQVVIQACERDTKSGWGATVYVVE 190 (204)
Q Consensus 162 a~~~~~~~l~~~~~~d~~~~~~~~v~~i~ 190 (204)
+++.+||+.+.+||..++++++|++|+
T Consensus 147 --~l~~~al~~a~~rd~~sg~~i~v~~i~ 173 (174)
T 1g3k_A 147 --EIVEKSLRIAGDICVFTNTNFTIEELP 173 (174)
T ss_dssp --HHHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred --HHHHHHHHHHHHhccccCCceEEEEec
Confidence 799999999999999999999999986
No 48
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=100.00 E-value=2.6e-38 Score=242.72 Aligned_cols=167 Identities=14% Similarity=0.139 Sum_probs=151.0
Q ss_pred ceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEe-eCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHH
Q psy1779 7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQM-SPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTF 85 (204)
Q Consensus 7 ~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 85 (204)
||+|||+++||||||+|+|.+.|.++.+++.+|||+| ++|++++++|..+|++.|.++++.+++.|+.+ .++.+
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~-----~~~~~ 75 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN-----LTKAA 75 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-----HHHHH
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc-----HHHHH
Confidence 6899999999999999999999999999999999999 99999999999999999999999999988754 26667
Q ss_pred HHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecc--eEEEccchhhHHHhhhccCC-CCCCHHHH
Q psy1779 86 AAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTD--FVAGGSAQNMIMGIGESFWQ-PGLSPEQL 162 (204)
Q Consensus 86 a~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~--~~a~G~g~~~~~~~Le~~~~-~~ms~~ea 162 (204)
+++.+ .+++++..+||++++|+| | +|+||++||+|++. +++ +.|+|+|+++++++||+.|+ ++||.
T Consensus 76 ~~l~~-~~~~~~~~~~~~~~~lv~--D----~p~Ly~~d~~G~~~-~~~~~~~a~Gsgs~~a~~~le~~~~~~~ms~--- 144 (171)
T 1m4y_A 76 VELAK-DWRTDRVLRRLEALLLVA--D----KENIFIISGNGEVI-QPDDDAAAIGSGGPYALAAAKALLRNTDLSA--- 144 (171)
T ss_dssp HHHHH-HHHHCTTGGGCCCEEEEE--C----SSCEEEECTTSCEE-CCSSSEEEESTTHHHHHHHHHHHHHHCCCCH---
T ss_pred HHHHH-HHHHhCCCCceEEEEEEE--c----CCEEEEECCCCCEE-ecCCCEEEECCcHHHHHHHHHHhcccCCCCH---
Confidence 66654 667766547899999988 4 69999999999999 677 99999999999999999999 99996
Q ss_pred HHHHHHHHHHHHhhccccCCCEEEEEE
Q psy1779 163 FEVCSQVVIQACERDTKSGWGATVYVV 189 (204)
Q Consensus 163 ~~~~~~~l~~~~~~d~~~~~~~~v~~i 189 (204)
.+++.+||+.+.+||..++++++|+++
T Consensus 145 ~~l~~~al~~a~~rd~~sg~~i~v~~~ 171 (171)
T 1m4y_A 145 REIVEKAMTIAGEICIYTNQNIVIEEV 171 (171)
T ss_dssp HHHHHHHHHHHHHHCTTCCSCCEEEEC
T ss_pred HHHHHHHHHHHHHhCcccCCeEEEEEC
Confidence 678999999999999999999999864
No 49
>3fpw_A HBPS, extracellular HAEM-binding protein; heme binding protein; 1.60A {Streptomyces reticuli} PDB: 3fpv_A
Probab=58.58 E-value=27 Score=26.23 Aligned_cols=39 Identities=23% Similarity=0.204 Sum_probs=33.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEE
Q psy1779 154 QPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTI 196 (204)
Q Consensus 154 ~~~ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~ 196 (204)
.+.+|+++|.+++..++..+.++ +.++.|.|++..|...
T Consensus 62 ~~~ltl~~A~~l~~aA~~~A~~~----g~pV~IaVvD~~G~ll 100 (192)
T 3fpw_A 62 STHLTLEAATKAARAAVEAAEKD----GRHVSVAVVDRNGNTL 100 (192)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHT----TCCCEEEEEETTSCEE
T ss_pred cCCCCHHHHHHHHHHHHHHHHhc----CCCEEEEEEeCCCCEE
Confidence 46799999999999999999886 4689999999988653
No 50
>2a2l_A Unknown; structural genomics, PSI, protein structure initiat YORK SGX research center for structural genomics, NYSGXRC, function; 2.20A {Klebsiella pneumoniae} SCOP: d.110.9.1
Probab=53.36 E-value=21 Score=25.42 Aligned_cols=38 Identities=16% Similarity=0.114 Sum_probs=32.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEE
Q psy1779 155 PGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTI 196 (204)
Q Consensus 155 ~~ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~ 196 (204)
+.+|+++|.+++..++..+.++ +.++.|.|++..|...
T Consensus 10 ~~lt~~~A~~l~~aa~~~A~~~----g~~v~IaVvD~~G~ll 47 (145)
T 2a2l_A 10 QTITLAAAQQMAAAVEKKATEI----NVAVVFSVVDRGGNTL 47 (145)
T ss_dssp EEECHHHHHHHHHHHHHHHHHT----TCCCEEEEEETTSCEE
T ss_pred cCCCHHHHHHHHHHHHHHHHHc----CCCEEEEEEECCCCEE
Confidence 4589999999999999999875 5689999999988653
No 51
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1
Probab=41.09 E-value=71 Score=20.66 Aligned_cols=43 Identities=16% Similarity=0.034 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEEeccCC
Q psy1779 157 LSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRM 203 (204)
Q Consensus 157 ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~~~~~ 203 (204)
....+.++-++..++=....| |+++++.=|+ +|+....+.+.|
T Consensus 6 ~~~~~~I~~~L~~IRP~L~~d---GGdvelv~v~-~g~V~V~L~GaC 48 (88)
T 1xhj_A 6 PTMFDQVAEVIERLRPFLLRD---GGDCTLVDVE-DGIVKLQLHGAC 48 (88)
T ss_dssp SCHHHHHHHHHHHHHHHHHHH---SCEEEEEECC-SSEEEEEEESSC
T ss_pred HHHHHHHHHHHHHhcHHHHhc---CCeEEEEEEE-CCEEEEEEeecC
Confidence 344555555555566666655 7899999885 788888887765
No 52
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=38.69 E-value=6.6 Score=31.93 Aligned_cols=36 Identities=8% Similarity=-0.121 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCCeeeecceEEEccchhhHHHhhhcc
Q psy1779 117 EVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESF 152 (204)
Q Consensus 117 ~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~ 152 (204)
-|..|.||+.|.+...+.-+-.+...+.++..|++.
T Consensus 102 ~r~tfiId~~G~i~~~~~~v~~~~h~~~~l~~~~~~ 137 (322)
T 4eo3_A 102 VRSTFLIDRWGFVRKEWRRVKVEGHVQEVKEALDRL 137 (322)
T ss_dssp CCEEEEECTTSBEEEEEESCCSTTHHHHHHHHHHHH
T ss_pred ccEEEEECCCCEEEEEEeCCCccccHHHHHHHHhhh
Confidence 367899999999874344444455555666665543
No 53
>3ub6_A Chemoreceptor TLPB; homodimer, four-helix bundle, PAS domain, membrane protein; 1.38A {Helicobacter pylori} PDB: 3ub7_A 3ub8_A 3ub9_A*
Probab=30.82 E-value=75 Score=23.14 Aligned_cols=51 Identities=6% Similarity=-0.011 Sum_probs=33.5
Q ss_pred HHHhhhccCCCCCCHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEEecc
Q psy1779 145 IMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIAT 201 (204)
Q Consensus 145 ~~~~Le~~~~~~ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~~~ 201 (204)
+.+.++..+. .++.+||.+.+.+.|.....-+ ++=.+.+++.+|.. ..+|.
T Consensus 36 a~~~i~~~~~-~~~~~ea~~~a~~~l~~~r~g~----~~gY~fv~d~~g~~-l~hP~ 86 (181)
T 3ub6_A 36 LEQGIHEYYK-SFDNDTARKMALDYFKRINDDK----GMIYMVVVDKNGVV-LFDPV 86 (181)
T ss_dssp HHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHTC----SSCEEEEECTTCBE-EECTT
T ss_pred HHHHHHHHHH-hCCHHHHHHHHHHHHHhCccCC----CCCEEEEEeCCCCE-EEeCC
Confidence 4444444433 3899999999999997665421 22467888999875 45553
No 54
>1apy_B Aspartylglucosaminidase; glycosylasparaginase, hydrolase; HET: NAG BMA; 2.00A {Homo sapiens} SCOP: d.153.1.5 PDB: 1apz_B*
Probab=30.13 E-value=1.1e+02 Score=21.69 Aligned_cols=55 Identities=9% Similarity=0.076 Sum_probs=33.3
Q ss_pred eEEEccchhhHHHhhhc----cCCCCCCHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCce
Q psy1779 135 FVAGGSAQNMIMGIGES----FWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKV 194 (204)
Q Consensus 135 ~~a~G~g~~~~~~~Le~----~~~~~ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~ 194 (204)
..++|.|...++..+-. .++..++++||.+.+++-+.... ....--+..++++|.
T Consensus 49 ~s~TG~GE~iiR~~~A~~iv~~m~~G~~~~~A~~~~i~~~~~~~-----~~~~ggvIa~d~~G~ 107 (141)
T 1apy_B 49 AAATGNGDILMRFLPSYQAVEYMRRGEDPTIACQKVISRIQKHF-----PEFFGAVICANVTGS 107 (141)
T ss_dssp EEEEECHHHHGGGCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHC-----TTCCEEEEEEETTSC
T ss_pred EEeecChHHHHHHhHHHHHHHHHHcCCCHHHHHHHHHHHHHHhc-----CCCcEEEEEEeCCCC
Confidence 45789998766655443 23468999999887765443321 112335666677763
No 55
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=24.14 E-value=86 Score=20.06 Aligned_cols=50 Identities=8% Similarity=-0.011 Sum_probs=29.4
Q ss_pred EEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHHHHHHHHHHHHHH
Q psy1779 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQAC 174 (204)
Q Consensus 120 Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~~~~~~l~~~~ 174 (204)
-..+.|+|+-.....|..-|...... | .-.|++|+.||-+.+.++...+.
T Consensus 27 ~L~V~psG~K~w~~ryr~~Gk~~~~~---L--G~yp~~sL~~AR~~a~~~r~~l~ 76 (88)
T 3jtz_A 27 YLLVKPGGSRHWYLKYRISGKESRIA---L--GAYPAISLSDARQQREGIRKMLA 76 (88)
T ss_dssp EEEECTTSCEEEEEEEEETTEEEEEE---E--EETTTSCHHHHHHHHHHHHHHHT
T ss_pred EEEEecCCCEEEEEEEEeCCeEEEEE---e--ECCCCCCHHHHHHHHHHHHHHHH
Confidence 34578888754334444323221110 0 01378999999999988886553
No 56
>2q8v_A NBLA protein; phycobilisome, nutrient starvation, disassembly, bleaching, protein binding; 2.50A {Thermosynechococcus vulcanus} PDB: 2qdo_A
Probab=24.01 E-value=84 Score=19.06 Aligned_cols=23 Identities=17% Similarity=0.082 Sum_probs=20.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhc
Q psy1779 155 PGLSPEQLFEVCSQVVIQACERD 177 (204)
Q Consensus 155 ~~ms~~ea~~~~~~~l~~~~~~d 177 (204)
.+||.++|.++.++.++..+-+|
T Consensus 28 ~~ls~EQAqe~Lve~~rQmMike 50 (63)
T 2q8v_A 28 SAMSLQEARELLLQASRLLMMKD 50 (63)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHHHHH
Confidence 37999999999999999887665
No 57
>1ojh_A NBLA; degradation protein, phycobilisome degradation, protein BIND; HET: MSE; 1.80A {Anabaena SP} SCOP: a.214.1.1
Probab=23.84 E-value=84 Score=19.18 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=19.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhc
Q psy1779 155 PGLSPEQLFEVCSQVVIQACERD 177 (204)
Q Consensus 155 ~~ms~~ea~~~~~~~l~~~~~~d 177 (204)
.+||.|+|.++.++.++..+-+|
T Consensus 23 ~~ls~EQaqe~Lve~~rQmMike 45 (65)
T 1ojh_A 23 QNMSHDQAKDFLVKLYEQMVVRE 45 (65)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHHHHH
Confidence 37999999999999999877655
No 58
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=23.66 E-value=1.3e+02 Score=18.67 Aligned_cols=39 Identities=18% Similarity=0.174 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCce
Q psy1779 156 GLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKV 194 (204)
Q Consensus 156 ~ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~ 194 (204)
.|+.+||+....+.|..+..+-....+.-.+.+|+=.|.
T Consensus 7 Gl~v~eA~~~l~~~l~~~~~~~~~~~g~~~v~II~GkG~ 45 (82)
T 3fau_A 7 GLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGN 45 (82)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC--
T ss_pred CCcHHHHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 589999999988888777641111123446777776654
No 59
>1p4k_A N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase; alpha beta, beta alpha, sandwich, hydrolase; 1.90A {Elizabethkingia meningoseptica} SCOP: d.153.1.5 PDB: 1p4v_A 9gaa_A 9gaf_A 9gac_A 3ljq_A 2gl9_A* 1ayy_A 2gaw_A 2gac_A* 2gaw_B 1ayy_B 2gl9_B* 2gac_B*
Probab=22.74 E-value=1.7e+02 Score=23.41 Aligned_cols=60 Identities=13% Similarity=0.241 Sum_probs=37.0
Q ss_pred eEEEccchhhHHHhhhc----cCCCCCCHHHHHHHHHHHHHHHHh-hc-cccCCCEEEEEEcCCce
Q psy1779 135 FVAGGSAQNMIMGIGES----FWQPGLSPEQLFEVCSQVVIQACE-RD-TKSGWGATVYVVEPDKV 194 (204)
Q Consensus 135 ~~a~G~g~~~~~~~Le~----~~~~~ms~~ea~~~~~~~l~~~~~-~d-~~~~~~~~v~~i~~~g~ 194 (204)
..++|.|...++..+-. .++..++++||.+.+++-+..... +. ...+...=+..++++|-
T Consensus 200 vs~TG~GE~iir~~~A~~i~~~m~~G~s~~~A~~~ai~~~~~~~~~~~~~~~~~~gG~Iavd~~G~ 265 (295)
T 1p4k_A 200 ATATGHGEEVIRTVGTHLVVELMNQGRTPQQACKEAVERIVKIVNRRGKNLKDIQVGFIALNKKGE 265 (295)
T ss_dssp EEEEECHHHHHHHTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEEEEETTSC
T ss_pred EEeecccHHHHhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccccccCCceEEEEEEcCCCC
Confidence 45789998877765443 234689999998888766654432 11 01123444566777774
No 60
>2fgy_A Carboxysome shell polypeptide; beta class of carbonic anhydrase, lyase; 2.20A {Halothiobacillus neapolitanus}
Probab=20.19 E-value=1.8e+02 Score=25.09 Aligned_cols=65 Identities=14% Similarity=0.203 Sum_probs=46.5
Q ss_pred CceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHHHHHHHHHHHHHHh
Q psy1779 101 PLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACE 175 (204)
Q Consensus 101 P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~~~~~~l~~~~~ 175 (204)
.-.|.+|+.|+|.|+.--++.--|..|... -..++....=. +. .-.|+.++|...+.+++..+..
T Consensus 313 GASVd~LLIGvDTDtDAirVHvPd~~g~~~-l~r~vd~~~lY-------~~--T~~l~~~~Ar~~I~~aI~~a~~ 377 (542)
T 2fgy_A 313 GASIDILLIGVDTDTDAIRVHIPDSKGFLN-PYRYVDNTVTY-------AQ--TLHLAPDEARVIIHEAILNANR 377 (542)
T ss_dssp TCCEEEEEEEEETTTTEEEEECCCTTSCCC-TTCEEEHHHHH-------HH--HTTSCHHHHHHHHHHHHHHHHT
T ss_pred CcccceeEEeeccCcccEEEecCCcCCccc-HHHhhhHHHHH-------HH--hcCCCHHHHHHHHHHHHHHhcc
Confidence 346899999999877777788888888887 46665532111 11 1368889998888888877765
Done!