RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1779
(204 letters)
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Length = 205
Score = 176 bits (450), Expect = 1e-56
Identities = 69/199 (34%), Positives = 103/199 (51%), Gaps = 1/199 (0%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
GGA++AM GKNC AI D + K+ M LY+ GL D A+++
Sbjct: 8 GGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRL 67
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
R Y E I P T ++ + LY ++ P + P+IAG P + + F+ +LD+
Sbjct: 68 KFRLNLYELKEGRQIKPYTLMSMVANLLYEKRF-GPYYTEPVIAGLDPKTFKPFICSLDL 126
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
GC DFV G+ + G+ ES W+P + P+ LFE SQ ++ A +RD SG G
Sbjct: 127 IGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAVSGMGVI 186
Query: 186 VYVVEPDKVTIRKIATRMD 204
V+++E DK+T R + RMD
Sbjct: 187 VHIIEKDKITTRTLKARMD 205
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I*
1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I*
3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I*
3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Length = 204
Score = 172 bits (437), Expect = 1e-54
Identities = 72/199 (36%), Positives = 106/199 (53%), Gaps = 2/199 (1%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
GG +VAM GK+C AI D L ++ K+ H++L GL D E
Sbjct: 8 GGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMF 66
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
+T Y E+ I P+TF + S LY R+ P F+ P++AG SG+ F++ D+
Sbjct: 67 RYKTNLYKLKEERAIEPETFTQLVSSSLYERRF-GPYFVGPVVAGINSKSGKPFIAGFDL 125
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
GC DF+ G+A + + G+ ES ++P L PE LFE SQ ++ A +RD SGWGA
Sbjct: 126 IGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADRDALSGWGAV 185
Query: 186 VYVVEPDKVTIRKIATRMD 204
VY+++ D+V R + R D
Sbjct: 186 VYIIKKDEVVKRYLKMRQD 204
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Length = 213
Score = 157 bits (399), Expect = 8e-49
Identities = 48/208 (23%), Positives = 87/208 (41%), Gaps = 12/208 (5%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
GG I+A+AG++ + D L +G K ++++ + G D + + +
Sbjct: 9 GGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKII 68
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
R Y S ++ AA+ S LY+R+ P ++ II G + G+ + + D
Sbjct: 69 EARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFF-PYYVYNIIGG-LDEEGKGAVYSFDP 126
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESF---------WQPGLSPEQLFEVCSQVVIQACER 176
G R F AGGSA M+ + ++ LS ++ + V I A ER
Sbjct: 127 VGSYQRD-SFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAER 185
Query: 177 DTKSGWGATVYVVEPDKVTIRKIATRMD 204
D +G + +V + + ++ R D
Sbjct: 186 DVYTGDALRICIVTKEGIREETVSLRKD 213
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M*
1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L*
2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L*
3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Length = 222
Score = 147 bits (373), Expect = 7e-45
Identities = 46/219 (21%), Positives = 86/219 (39%), Gaps = 21/219 (9%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG I+ +AG++ + D + + YE KV ++ + G ADG +
Sbjct: 7 DNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVK 66
Query: 64 KMTLRTANY-VASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLST 122
+ Y +S ++ A LY ++ P +++ IIAG + G+ + +
Sbjct: 67 RFKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRFF-PYYVHTIIAG-LDEDGKGAVYS 124
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGESF-----------------WQPGLSPEQLFEV 165
D G R+ AGG+A ++IM ++ LS E++ ++
Sbjct: 125 FDPVGSYERE-QCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIKL 183
Query: 166 CSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A ER + G G + +V D V + D
Sbjct: 184 VRDSFTSATERHIQVGDGLEILIVTKDGVRKEFYELKRD 222
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug
development, protein degradation, hydrolase-hydrolase
inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB:
3unh_N
Length = 199
Score = 140 bits (355), Expect = 2e-42
Identities = 37/194 (19%), Positives = 69/194 (35%), Gaps = 5/194 (2%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
I+A+ +G D + G + +K+ + ++ G AD A+ +
Sbjct: 3 IMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQ 62
Query: 69 TANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGC 128
+ + P A + Y + L + I+AG+ G G
Sbjct: 63 LELHGLELEEPPLVLAAANVVKNISYKYR--EDLLAHLIVAGWDQREGGQVY---GTMGG 117
Query: 129 ETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYV 188
+ F GGS + I G ++ ++PG++PE+ + + A RD SG +
Sbjct: 118 MLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIYLVT 177
Query: 189 VEPDKVTIRKIATR 202
+ V R I
Sbjct: 178 ITAAGVDHRVILGD 191
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A
{Archaeoglobus fulgidus} SCOP: d.153.1.4
Length = 202
Score = 138 bits (351), Expect = 1e-41
Identities = 35/187 (18%), Positives = 75/187 (40%), Gaps = 3/187 (1%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
V + K+ + + G+F ++ K++Q++ + + G D A + +
Sbjct: 3 TVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIE 62
Query: 69 TANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGC 128
Y + + A + S L + + P + +I G + ++ ++D G
Sbjct: 63 ANLYEIRRERKPTVRAIATLTSNLLNSYRYF-PYLVQLLIGGIDSEGKSIY--SIDPIGG 119
Query: 129 ETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYV 188
+ D VA GS G+ E + P + ++ E+ + + A +RD+ SG G V
Sbjct: 120 AIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVK 179
Query: 189 VEPDKVT 195
+ D+
Sbjct: 180 ITEDEFY 186
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K
1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J*
2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J*
3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Length = 198
Score = 134 bits (340), Expect = 5e-40
Identities = 36/189 (19%), Positives = 77/189 (40%), Gaps = 2/189 (1%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
I+ + ++ + + +G + + ++K Q+SPH + G D +QFAE +
Sbjct: 4 ILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQAN 63
Query: 69 TANYVASEQSPISPDTFAAIASWELYARKLT-SPLFINPIIAGFYPDSGEVFLSTLDMAG 127
Y E +SP ++ EL + P +N +I G+ + L +D G
Sbjct: 64 IQLYSIREDYELSPQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLG 123
Query: 128 CETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVY 187
+ + A G + + + ++P ++ E+ ++ V + +R G V
Sbjct: 124 T-KVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLLKLCVQELEKRMPMDFKGVIVK 182
Query: 188 VVEPDKVTI 196
+V+ D +
Sbjct: 183 IVDKDGIRQ 191
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase,
protease, threonine protease; 4.10A {Methanocaldococcus
jannaschii}
Length = 264
Score = 133 bits (336), Expect = 2e-39
Identities = 10/188 (5%), Positives = 36/188 (19%), Gaps = 2/188 (1%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
+ + + + V + + + + + L
Sbjct: 4 MQMVPPSAYDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLV 63
Query: 69 TANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGC 128
+ A + + I + + L C
Sbjct: 64 KIRSIEKIFQIDDHVAAATSGLVADARVLI-DRARLEAQIYRLTYGEE-ISIEMLAKKIC 121
Query: 129 ETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYV 188
+ ++ GG + + + + + + +A + +
Sbjct: 122 DIKQAYTQHGGVRPFGVSLLIAGIDKNEARLFETDPSGALIEYKATAIGSGRPVVMELLE 181
Query: 189 VEPDKVTI 196
E
Sbjct: 182 KEYRDDIT 189
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease,
NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP:
d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M*
3nzj_M* 3nzw_M* 3nzx_M*
Length = 266
Score = 128 bits (323), Expect = 8e-37
Identities = 31/201 (15%), Positives = 71/201 (35%), Gaps = 13/201 (6%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G ++++M N I D+L G ++ + + + G +D +
Sbjct: 41 GTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLL 100
Query: 66 TLRTANY-----VASEQSPISPDTFAAIASWELYARKLT-SPLFINPIIAGFYPDSGEVF 119
+A + + P + +Y R+ +PL+ I+AG + G+ F
Sbjct: 101 KDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSN-GDQF 159
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFW-----QPGLSPEQLFEVCSQVVIQAC 174
L +++ G T + +A G +M + P + + E +
Sbjct: 160 LRYVNLLGV-TYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLY 218
Query: 175 ERDTKSGWGATVYVVEPDKVT 195
RD +S ++ +++ +
Sbjct: 219 YRDARSSRNFSLAIIDKNTGL 239
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Length = 201
Score = 125 bits (316), Expect = 2e-36
Identities = 35/189 (18%), Positives = 77/189 (40%), Gaps = 3/189 (1%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
++ + G + + D + + + +K+ +MS + L+ G D +QFAE +
Sbjct: 4 LIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKN 63
Query: 69 TANYVASEQSPISPDTFAAIASWELY-ARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAG 127
Y +SP A L + +P +N ++AG+ G L +D
Sbjct: 64 VQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGP-ALYYMDYLA 122
Query: 128 CETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVY 187
K F A G + + I + ++ P +S E+ E+ + + + +R + +V
Sbjct: 123 A-LAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKCLEELQKRFILNLPTFSVR 181
Query: 188 VVEPDKVTI 196
+++ + +
Sbjct: 182 IIDKNGIHD 190
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N*
1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M*
2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M*
3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Length = 233
Score = 123 bits (311), Expect = 2e-35
Identities = 31/201 (15%), Positives = 71/201 (35%), Gaps = 13/201 (6%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G ++++M N I D+L G ++ + + + G +D +
Sbjct: 8 GTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLL 67
Query: 66 TLRTANY-----VASEQSPISPDTFAAIASWELYARKLT-SPLFINPIIAGFYPDSGEVF 119
+A + + P + +Y R+ +PL+ I+AG + G+ F
Sbjct: 68 KDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSN-GDQF 126
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFW-----QPGLSPEQLFEVCSQVVIQAC 174
L +++ G T + +A G +M + P + + E +
Sbjct: 127 LRYVNLLGV-TYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLY 185
Query: 175 ERDTKSGWGATVYVVEPDKVT 195
RD +S ++ +++ +
Sbjct: 186 YRDARSSRNFSLAIIDKNTGL 206
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_N* 3une_N
Length = 205
Score = 117 bits (295), Expect = 3e-33
Identities = 40/191 (20%), Positives = 76/191 (39%), Gaps = 4/191 (2%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
I+A+ +G D G + +K+ + ++ G AD A+ +T +
Sbjct: 3 IMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQ 62
Query: 69 TANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGC 128
+ P T A++ Y + L IIAG+ P G + ++ M G
Sbjct: 63 LGFHSIELNEPPLVHTAASLFKEMCYRYR--EDLMAGIIIAGWDPQEG-GQVYSVPMGGM 119
Query: 129 ETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYV 188
R+ F GGS + I G ++ ++ G++ E+ + + + A ERD SG +
Sbjct: 120 MVRQ-SFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAA 178
Query: 189 VEPDKVTIRKI 199
+ V + +
Sbjct: 179 IAESGVERQVL 189
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L
1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K*
2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K*
3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Length = 212
Score = 116 bits (294), Expect = 4e-33
Identities = 41/188 (21%), Positives = 74/188 (39%), Gaps = 3/188 (1%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
+A + + VD G++ ++ +V +++P L G AD + + +
Sbjct: 3 TLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQ 62
Query: 69 TANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGC 128
+ E+ IS + I S +Y K + L + +I G+ G + +D G
Sbjct: 63 CRLHELREKERISVAAASKILSNLVYQYK-GAGLSMGTMICGYTRKEG-PTIYYVDSDGT 120
Query: 129 ETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYV 188
K D GS Q G+ +S ++ LS E + + ++ A RD SG +Y
Sbjct: 121 -RLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYH 179
Query: 189 VEPDKVTI 196
V D
Sbjct: 180 VTEDGWIY 187
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation,
N-terminal nucleophilic HYDR 19S regulatory particle;
HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB:
3nzw_K* 3nzx_K*
Length = 287
Score = 117 bits (295), Expect = 2e-32
Identities = 43/191 (22%), Positives = 75/191 (39%), Gaps = 3/191 (1%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G +A + + VD G++ ++ KV +++P L G AD + +
Sbjct: 75 GTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWL 134
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
+ + E+ IS + I S +Y K + L + +I G+ G + +D
Sbjct: 135 GSQCRLHELREKERISVAAASKILSNLVYQYK-GAGLSMGTMICGYTRKEG-PTIYYVDS 192
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
G K D GS Q G+ +S ++ LS E + + ++ A RD SG
Sbjct: 193 DGTRL-KGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVN 251
Query: 186 VYVVEPDKVTI 196
+Y V D
Sbjct: 252 LYHVTEDGWIY 262
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N*
3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N*
1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N*
3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Length = 205
Score = 111 bits (281), Expect = 4e-31
Identities = 40/194 (20%), Positives = 78/194 (40%), Gaps = 7/194 (3%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
++ G +I+A+ K+ +G D G + +K+ ++ ++ G AD A
Sbjct: 6 VSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIA 65
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSG-EVFLS 121
+ + Y + +P + T A++ Y K L I+AG+ + EV+
Sbjct: 66 DIVQYHLELYTSQYGTPSTE-TAASVFKELCYENK--DNLTAGIIVAGYDDKNKGEVY-- 120
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
T+ + G K + GS I G + ++ +S E+ + + QA + D SG
Sbjct: 121 TIPLGGS-VHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSG 179
Query: 182 WGATVYVVEPDKVT 195
+ V+ V
Sbjct: 180 GVIRMVVLTAAGVE 193
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Length = 204
Score = 99.6 bits (249), Expect = 2e-26
Identities = 35/187 (18%), Positives = 70/187 (37%), Gaps = 4/187 (2%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
+A ++ + D G + ++ KV +++P+L G AD + + +
Sbjct: 3 TLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQ 62
Query: 69 TANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGC 128
Y + IS + + + +Y K L + +I G+ ++ +D G
Sbjct: 63 CRIYELRNKERISVAAASKLLANMVYQYK-GMGLSMGTMICGWDKRGPGLY--YVDSEGN 119
Query: 129 ETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYV 188
+ GS G+ + + L EQ +++ + + QA RD SG +Y
Sbjct: 120 -RISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYH 178
Query: 189 VEPDKVT 195
V D
Sbjct: 179 VREDGWI 185
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Length = 219
Score = 89.2 bits (222), Expect = 2e-22
Identities = 36/197 (18%), Positives = 72/197 (36%), Gaps = 7/197 (3%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G +++ + + I D L G +++ +++ L G AD + +
Sbjct: 8 GTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVL 67
Query: 66 TLRTANY-VASEQSPISPDTFAAIASWELYARKLT-SPLFINPIIAGFYPDSGEVFLSTL 123
+ + + SP + + +Y+R+ +PL+ +I G+ GE FL +
Sbjct: 68 GQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGY--ADGESFLGYV 125
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESF--WQPGLSPEQLFEVCSQVVIQACERDTKSG 181
DM G + +A G + + QP LS + ++ + + RD +S
Sbjct: 126 DMLGV-AYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYRDARSY 184
Query: 182 WGATVYVVEPDKVTIRK 198
V V I
Sbjct: 185 NRFQTATVTEKGVEIEG 201
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_H* 3une_H
Length = 234
Score = 89.7 bits (223), Expect = 2e-22
Identities = 33/188 (17%), Positives = 70/188 (37%), Gaps = 5/188 (2%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
I + K+ +G D +G + +K+H +SP++Y G AD + ++
Sbjct: 3 IAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSN 62
Query: 69 TANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGC 128
+ S T + L+ + + ++ G ++ ++ G
Sbjct: 63 LELHSLSTGRLPRVVTANRMLKQMLFRYR--GYIGAALVLGGVDVTGPHLY--SIYPHGS 118
Query: 129 ETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYV 188
T K +V GS M + E ++P + E+ + S+ + D SG + V
Sbjct: 119 -TDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCV 177
Query: 189 VEPDKVTI 196
+ +K+
Sbjct: 178 ISKNKLDF 185
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation,
N-terminal nucleophilic HYDR 19S regulatory particle;
HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB:
3nzw_H* 3nzx_H*
Length = 261
Score = 87.0 bits (216), Expect = 4e-21
Identities = 39/190 (20%), Positives = 69/190 (36%), Gaps = 5/190 (2%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G IV + N I D QG + K+H++SP ++ G AD + +
Sbjct: 29 GTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLI 88
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
+ + + L+ + + I+AG P +F ++
Sbjct: 89 GSNIELHSLYTSREPRVVSALQMLKQHLFKYQ--GHIGAYLIVAGVDPTGSHLF--SIHA 144
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
G T +++ GS M + ES W+ L+ E+ ++ S + D SG
Sbjct: 145 HGS-TDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVD 203
Query: 186 VYVVEPDKVT 195
V V+E K
Sbjct: 204 VCVMEIGKDA 213
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H*
1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H*
2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H*
3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Length = 222
Score = 85.0 bits (211), Expect = 1e-20
Identities = 38/187 (20%), Positives = 68/187 (36%), Gaps = 5/187 (2%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
IV + N I D QG + K+H++SP ++ G AD + +
Sbjct: 3 IVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSN 62
Query: 69 TANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGC 128
+ + + L+ + + I+AG P +F ++ G
Sbjct: 63 IELHSLYTSREPRVVSALQMLKQHLFKYQ--GHIGAYLIVAGVDPTGSHLF--SIHAHGS 118
Query: 129 ETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYV 188
T +++ GS M + ES W+ L+ E+ ++ S + D SG V V
Sbjct: 119 -TDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCV 177
Query: 189 VEPDKVT 195
+E K
Sbjct: 178 MEIGKDA 184
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB:
3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H*
3h6i_C 3h6f_C 3hf9_H 3mfe_H
Length = 291
Score = 84.6 bits (209), Expect = 4e-20
Identities = 33/200 (16%), Positives = 64/200 (32%), Gaps = 7/200 (3%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G IVA+ + D QG+ KV+ + G A ++FA
Sbjct: 57 GTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLY 116
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTS--PLFINPIIAGFYPDSGEVF---- 119
+ +Y E P++ + + + L P++AG+ + +
Sbjct: 117 AVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGR 176
Query: 120 -LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDT 178
+S G + + A GS + + + V + + A + D+
Sbjct: 177 IVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDS 236
Query: 179 KSGWGATVYVVEPDKVTIRK 198
+G V + P V I
Sbjct: 237 ATGGPDLVRGIFPTAVIIDA 256
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator
11S, hydrolase-HYD activator complex; 1.90A
{Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H
1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Length = 217
Score = 83.0 bits (206), Expect = 5e-20
Identities = 34/192 (17%), Positives = 76/192 (39%), Gaps = 5/192 (2%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G V + K+ + + + +F + + K+ Q+ + + GL D M
Sbjct: 8 GTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYM 67
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
Y + + + A + S L K P + ++ G + VF ++D
Sbjct: 68 KAELELYRLQRRVNMPIEAVATLLSNMLNQVKYM-PYMVQLLVGG-IDTAPHVF--SIDA 123
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
AG + + + + GS + G+ ES + ++ ++ ++ + + A +RD+ SG
Sbjct: 124 AGG-SVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMID 182
Query: 186 VYVVEPDKVTIR 197
V V+ ++
Sbjct: 183 VAVITRKDGYVQ 194
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, hydrolase; 3.10A {Rhodococcus
erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Length = 294
Score = 81.2 bits (200), Expect = 8e-19
Identities = 33/201 (16%), Positives = 65/201 (32%), Gaps = 9/201 (4%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G IVA+ K + D QG+ + V+ + G ++
Sbjct: 65 GTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLF 124
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARK--LTSPLFINPIIAGFYPDS------GE 117
+ +Y E P++ D A + + L + P++ G+ D+ G
Sbjct: 125 AVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGR 184
Query: 118 VFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERD 177
+ + E + + A GS + + P E + + A + D
Sbjct: 185 IVSYDVVGGRYEE-RAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDD 243
Query: 178 TKSGWGATVYVVEPDKVTIRK 198
+ +G + P VTI +
Sbjct: 244 SATGGPDLTRGIYPTAVTITQ 264
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, RH erythropolis, hydrolase;
2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Length = 235
Score = 77.6 bits (191), Expect = 7e-18
Identities = 33/198 (16%), Positives = 65/198 (32%), Gaps = 9/198 (4%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
IVA+ K + D QG+ + KV+ + G ++ +
Sbjct: 3 IVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVE 62
Query: 69 TANYVASEQSPISPDTFAAIASWELYARK--LTSPLFINPIIAGFYPDS------GEVFL 120
+Y E P++ D A + + L + P++ G+ D+ G +
Sbjct: 63 LEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVS 122
Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKS 180
+ E + + A GS + + P E + + A + D+ +
Sbjct: 123 YDVVGGRYEE-RAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSAT 181
Query: 181 GWGATVYVVEPDKVTIRK 198
G + P VTI +
Sbjct: 182 GGPDLTRGIYPTAVTITQ 199
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug
development, protein degradation, hydrolase-hydrolase
inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB:
3unh_H
Length = 234
Score = 72.7 bits (179), Expect = 6e-16
Identities = 30/190 (15%), Positives = 66/190 (34%), Gaps = 5/190 (2%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
I + ++ +G D + K+H ++P +Y G+ AD +
Sbjct: 3 IAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASK 62
Query: 69 TANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGC 128
+ S T I L+ + + + ++ G + +++ + G
Sbjct: 63 MELHALSTGREPRVATVTRILRQTLFRYQ--GHVGASLVVGGVDLNGPQLY--EVHPHGS 118
Query: 129 ETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYV 188
+ F A GS Q + + E +QP ++ E E+ + + D SG V
Sbjct: 119 -YSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLVEAITAGILSDLGSGGNVDACV 177
Query: 189 VEPDKVTIRK 198
+ +++
Sbjct: 178 ITAGGAKLQR 187
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome
endopeptidase comple mycobacterium tuberculosis,
hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis}
PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D
3hf9_A 3mfe_D
Length = 248
Score = 51.9 bits (124), Expect = 2e-08
Identities = 16/186 (8%), Positives = 44/186 (23%), Gaps = 15/186 (8%)
Query: 2 SLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQF 61
+ ++VA+A + + K+ ++ + G +
Sbjct: 23 GIARAKSVVALAYAGGVLFVAE--------NPSRSLQKISELYDRVGFAAAGKFNE-FDN 73
Query: 62 AEKMTLRTANYVASEQSPISPDTFA----AIASWELYARKLTSPLFINPIIAGF--YPDS 115
+ ++ A+ + + P + +A Y ++
Sbjct: 74 LRRGGIQFADTRGYAYDRRDVTGRQLANVYAQTLGTIFTEQAKPYEVELCVAEVAHYGET 133
Query: 116 GEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACE 175
L + G + FV G I + + S + +
Sbjct: 134 KRPELYRITYDGSIADEPHFVVMGGTTEPIANALKESYAENASLTDALRIAVAALRAGSA 193
Query: 176 RDTKSG 181
+
Sbjct: 194 DTSGGD 199
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, RH erythropolis, hydrolase;
2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB:
2h6j_A 1q5r_A
Length = 259
Score = 51.1 bits (122), Expect = 3e-08
Identities = 22/201 (10%), Positives = 55/201 (27%), Gaps = 21/201 (10%)
Query: 2 SLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQF 61
+ G ++V + ++ + + +KV ++ L G +
Sbjct: 23 GIARGRSVVVLTFRDGVLFVAE--------NPSTALHKVSELYDRLGFAAVGKYNEFENL 74
Query: 62 AEKMTLRT-ANYVASEQSPISPDTFAAIASWELYARKLTS---PLFINPIIA--GFYPDS 115
+ + ++ ++ + A + L T P + +A G
Sbjct: 75 RRAGIVHADMRGYSYDRRDVTGRSLANAYAQTL-GTIFTEQPKPYEVEICVAEVGRVGSP 133
Query: 116 GEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACE 175
L + G + FV G I ++ L E + + Q
Sbjct: 134 KAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADLDLEAAVGIAVNALRQGGA 193
Query: 176 RDTKSGWGATVYVVEPDKVTI 196
+ + V+ + +
Sbjct: 194 GEGEKR------NVDVASLEV 208
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 3e-05
Identities = 34/238 (14%), Positives = 75/238 (31%), Gaps = 69/238 (28%)
Query: 1 MSLNDGGAIV--AMAG--KNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCA 56
+ L ++ + G K A+ V + + +M ++ +N C
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDV----CL-SYKV------QCKMDFKIFWLNLKNCN 193
Query: 57 DGMQFAEKMT--LRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPD 114
E + L + + +S S + I S + R+L L P Y +
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL---LKSKP-----YEN 245
Query: 115 S---------GEVFLSTLDMAGCE----TRK---TDFVAGGSAQNMIMGIGESFWQPGLS 158
+ + ++ C+ TR TDF++ + ++ + L+
Sbjct: 246 CLLVLLNVQNAKA-WNAFNL-SCKILLTTRFKQVTDFLSAATTTHISL----DHHSMTLT 299
Query: 159 PEQLFEVCSQVV--------IQACE-------------RDTKSGWGATVYVVEPDKVT 195
P+++ + + + + RD + W + V DK+T
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH-VNCDKLT 356
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.015
Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 23/105 (21%)
Query: 2 SLNDG--GAIVAMAGKNCFAIGVDHLLVQ--GDFTIAEYENKVHQMSPH-LYLINPG--- 53
SL G A+ ++A V+ +V G S + + INPG
Sbjct: 1763 SL--GEYAALASLADVMSIESLVE--VVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVA 1818
Query: 54 --LCADGMQ-FAEKMTLRT------ANY-VASEQSPISPDTFAAI 88
+ +Q E++ RT NY V ++Q + D A+
Sbjct: 1819 ASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDL-RAL 1862
Score = 31.2 bits (70), Expect = 0.27
Identities = 23/150 (15%), Positives = 46/150 (30%), Gaps = 45/150 (30%)
Query: 45 PHLYLIN-----PGLCADGMQFAEKMTLRTANY-VASEQSPISPDTFAAIASWEL-YARK 97
YL++ P + +Q A +Y V ++ +P + +++
Sbjct: 227 DKDYLLSIPISCPLIGV--IQLA--------HYVVTAKLLGFTPGELRSYLKGATGHSQG 276
Query: 98 LTSPLFINPIIAGFYPDSGEVFLSTLDMA-------GCE----TRKTDFVAGGSAQNMIM 146
L + + I A DS E F ++ A G T ++
Sbjct: 277 LVTAVAI----AE--TDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLEN 330
Query: 147 GIGESFWQP-------GLSPEQLFEVCSQV 169
G P L+ EQ+ + ++
Sbjct: 331 NEG----VPSPMLSISNLTQEQVQDYVNKT 356
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D*
1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D*
3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D*
3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Length = 242
Score = 32.3 bits (74), Expect = 0.069
Identities = 20/120 (16%), Positives = 38/120 (31%), Gaps = 10/120 (8%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G + +A K +GV+ ++ K+ ++ H+ GL AD E
Sbjct: 26 GSTAIGIATKEGVVLGVEKR-ATSPLLESDSIEKIVEIDRHIGCAMSGLTADARSMIEHA 84
Query: 66 TLRTANYVASEQSPISPDTFA-AIASWE----LYARKLTS----PLFINPIIAGFYPDSG 116
+ I+ ++ ++ A P + +IAG D G
Sbjct: 85 RTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDG 144
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E*
1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E*
3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E*
3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Length = 233
Score = 32.2 bits (74), Expect = 0.080
Identities = 9/81 (11%), Positives = 23/81 (28%), Gaps = 3/81 (3%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G V + + ++ Y+ K+ + H+ L GL D + +
Sbjct: 31 GSVTVGLRSNTHAVLVALKRNAD---ELSSYQKKIIKCDEHMGLSLAGLAPDARVLSNYL 87
Query: 66 TLRTANYVASEQSPISPDTFA 86
+ ++ +
Sbjct: 88 RQQCNYSSLVFNRKLAVERAG 108
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Length = 261
Score = 31.5 bits (72), Expect = 0.13
Identities = 17/122 (13%), Positives = 41/122 (33%), Gaps = 19/122 (15%)
Query: 6 GGAIVAMAGKNCFAIGV-----DHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQ 60
G + + + + LL + F+ K+++++ + G+ +D
Sbjct: 31 AGTCLGILANDGVLLAAERRNIHKLLDEVFFS-----EKIYKLNEDMACSVAGITSDANV 85
Query: 61 FAEKMTLRTANYVASEQSPISPDTFA-AIASWELYARKLTS-----PLFINPIIAGFYPD 114
++ L Y+ Q PI + A+ + T P ++ + G+
Sbjct: 86 LTNELRLIAQRYLLQYQEPIPCEQLVTALCD---IKQAYTQFGGKRPFGVSLLYIGWDKH 142
Query: 115 SG 116
G
Sbjct: 143 YG 144
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Length = 233
Score = 31.4 bits (72), Expect = 0.14
Identities = 14/86 (16%), Positives = 23/86 (26%), Gaps = 11/86 (12%)
Query: 6 GGAIVAMAGKNCFAIGV-----DHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQ 60
G V + N + L + KV ++ H+ L+ G+ D
Sbjct: 31 GAPSVGIKAANGVVLATEKKQKSILYDERSVH------KVEPITKHIGLVYSGMGPDYRV 84
Query: 61 FAEKMTLRTANYVASEQSPISPDTFA 86
+ Y Q PI
Sbjct: 85 LVHRARKLAQQYYLVYQEPIPTAQLV 110
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Length = 248
Score = 31.1 bits (71), Expect = 0.20
Identities = 12/86 (13%), Positives = 31/86 (36%), Gaps = 11/86 (12%)
Query: 6 GGAIVAMAGKNCFAIGV-----DHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQ 60
G V + G++ +GV L + K+ + ++ + GL AD
Sbjct: 29 GSTAVGVRGRDIVVLGVEKKSVAKLQDERTVR------KICALDDNVCMAFAGLTADARI 82
Query: 61 FAEKMTLRTANYVASEQSPISPDTFA 86
+ + ++ + + P++ +
Sbjct: 83 VINRARVECQSHRLTVEDPVTVEYIT 108
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Length = 263
Score = 31.1 bits (71), Expect = 0.21
Identities = 13/81 (16%), Positives = 24/81 (29%), Gaps = 3/81 (3%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G A V + K + +A ++ K+ + H+ + GL AD M
Sbjct: 32 GSATVGLKSKTHAVLVALKRAQS---ELAAHQKKILHVDNHIGISIAGLTADARLLCNFM 88
Query: 66 TLRTANYVASEQSPISPDTFA 86
+ P+
Sbjct: 89 RQECLDSRFVFDRPLPVSRLV 109
>1yif_A Beta-1,4-xylosidase; glycosidase, xylan, structural genomics, PSI,
protein structure initiative; 1.80A {Bacillus subtilis}
SCOP: b.29.1.23 b.67.2.1
Length = 533
Score = 31.0 bits (70), Expect = 0.25
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 103 FINPIIAGFYPD 114
NP++ GF PD
Sbjct: 3 ITNPVLKGFNPD 14
>3c2u_A Xylosidase/arabinosidase; tetramer, glycoside hydrolase, GH43,
alpha-L- arabinofuranosidase; HET: B3P; 1.30A
{Selenomonas ruminantium} PDB: 1y7b_A* 1yi7_A*
Length = 538
Score = 31.0 bits (70), Expect = 0.26
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 103 FINPIIAGFYPD 114
NP++ GF PD
Sbjct: 3 IQNPVLKGFNPD 14
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B*
1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B*
3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B*
3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Length = 244
Score = 30.7 bits (70), Expect = 0.27
Identities = 14/90 (15%), Positives = 31/90 (34%), Gaps = 10/90 (11%)
Query: 2 SLNDGGAIVAMAGKNCFAIGV-----DHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCA 56
S++ G + + + + LL Q T K+++++ + + GL A
Sbjct: 27 SISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTST-----EKLYKLNDKIAVAVAGLTA 81
Query: 57 DGMQFAEKMTLRTANYVASEQSPISPDTFA 86
D + NY+ + I +
Sbjct: 82 DAEILINTARIHAQNYLKTYNEDIPVEILV 111
>3zxk_A Hiaxhd3; hydrolase, sugar binding protein; HET: XYP EPE; 1.44A
{Humicola insolens} PDB: 3zxj_A* 3zxl_A*
Length = 542
Score = 30.7 bits (69), Expect = 0.31
Identities = 4/12 (33%), Positives = 7/12 (58%)
Query: 103 FINPIIAGFYPD 114
F NP++ +P
Sbjct: 8 FTNPVLWEDHPA 19
>2exh_A Beta-D-xylosidase; glykosidase, hydrolsase, family43, hydrolase;
HET: MES; 1.88A {Geobacillus stearothermophilus} SCOP:
b.29.1.23 b.67.2.1 PDB: 2exi_A* 2exj_A* 2exk_A*
Length = 535
Score = 30.6 bits (69), Expect = 0.32
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 103 FINPIIAGFYPD 114
NPI+ GF+PD
Sbjct: 4 IKNPILTGFHPD 15
>1yrz_A Xylan beta-1,4-xylosidase; structural genomics, nysgxrc target
T1997, PSI, structure initiative; 2.00A {Bacillus
halodurans} SCOP: b.29.1.23 b.67.2.1
Length = 528
Score = 30.6 bits (69), Expect = 0.33
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 103 FINPIIAGFYPD 114
NPI+ GF+PD
Sbjct: 5 IQNPILPGFHPD 16
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F*
1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F*
3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F*
3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Length = 244
Score = 30.3 bits (69), Expect = 0.36
Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 11/86 (12%)
Query: 6 GGAIVAMAGKNCFAIGV-----DHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQ 60
G + + + V LLV K+ + H+ + GL DG
Sbjct: 30 GTTSIGIKCNDGVVFAVEKLITSKLLVPQKNV------KIQVVDRHIGCVYSGLIPDGRH 83
Query: 61 FAEKMTLRTANYVASEQSPISPDTFA 86
+ A++ ++PI FA
Sbjct: 84 LVNRGREEAASFKKLYKTPIPIPAFA 109
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Length = 254
Score = 30.4 bits (69), Expect = 0.36
Identities = 14/85 (16%), Positives = 31/85 (36%), Gaps = 1/85 (1%)
Query: 2 SLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQF 61
++ + + + K+ GV+ L V ++ + H+ + GL AD
Sbjct: 29 AVENSSTAIGIRCKDGVVFGVEKL-VLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSL 87
Query: 62 AEKMTLRTANYVASEQSPISPDTFA 86
A+ +N+ ++ I A
Sbjct: 88 ADIAREEASNFRSNFGYNIPLKHLA 112
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G*
1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G*
3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G*
3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Length = 243
Score = 30.3 bits (69), Expect = 0.39
Identities = 18/120 (15%), Positives = 35/120 (29%), Gaps = 12/120 (10%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
+A+ GK+C + V + + +S + ++ G D A
Sbjct: 28 QTNINSLAVRGKDCTVVISQKK-VPDKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAAL 86
Query: 64 KMTLRTANYVASEQSPISPDTFA-AIASWEL------YARKLTSPLFINPIIAGFYPDSG 116
+ A + + D A +A+ Y R PL + + G
Sbjct: 87 RAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMR----PLGVILTFVSVDEELG 142
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal
nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO
MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G*
3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 3bdm_F* 1fnt_G* 2zcy_F*
Length = 288
Score = 30.0 bits (68), Expect = 0.45
Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 11/86 (12%)
Query: 6 GGAIVAMAGKNCFAIGV-----DHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQ 60
G + + + V LLV K+ + H+ + GL DG
Sbjct: 34 GTTSIGIKCNDGVVFAVEKLITSKLLVPQKNV------KIQVVDRHIGCVYSGLIPDGRH 87
Query: 61 FAEKMTLRTANYVASEQSPISPDTFA 86
+ A++ ++PI FA
Sbjct: 88 LVNRGREEAASFKKLYKTPIPIPAFA 113
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Length = 246
Score = 29.9 bits (68), Expect = 0.49
Identities = 23/119 (19%), Positives = 41/119 (34%), Gaps = 10/119 (8%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
G VA+ GK+C I V + + +++ ++ + G+ AD +
Sbjct: 34 QGGLTSVAVRGKDCAVIVTQKK-VPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQ 92
Query: 64 KMTLRTANYVASEQSPISPDTFA-AIASWELYARKLTS-----PLFINPIIAGFYPDSG 116
+ AN+ I D IA ++ T PL I+ G + G
Sbjct: 93 RARYEAANWKYKYGYEIPVDMLCKRIAD---ISQVYTQNAEMRPLGCCMILIGIDEEQG 148
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Length = 241
Score = 29.8 bits (68), Expect = 0.50
Identities = 11/83 (13%), Positives = 28/83 (33%), Gaps = 1/83 (1%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
G + + + V+ + K+ ++ H+ GL AD +
Sbjct: 32 KLGSTAIGIQTSEGVCLAVEKR-ITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLID 90
Query: 64 KMTLRTANYVASEQSPISPDTFA 86
K + T N+ + ++ ++
Sbjct: 91 KARVETQNHWFTYNETMTVESVT 113
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.54
Identities = 6/27 (22%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 63 EKMTLRTANYVASEQSPISPDTFAAIA 89
EK L+ + + + D+ A+A
Sbjct: 18 EKQALKK---LQASLKLYADDSAPALA 41
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A
{Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Length = 246
Score = 29.6 bits (67), Expect = 0.55
Identities = 13/90 (14%), Positives = 29/90 (32%), Gaps = 11/90 (12%)
Query: 2 SLNDGGAIVAMAGKNCFAIGV-----DHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCA 56
++ G + + K + LL + K++++ H+ GL A
Sbjct: 30 AVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTIE------KIYKIDEHICAATSGLVA 83
Query: 57 DGMQFAEKMTLRTANYVASEQSPISPDTFA 86
D ++ + + PI+ A
Sbjct: 84 DARVLIDRARIEAQINRLTYDIPITVKELA 113
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 29.5 bits (67), Expect = 0.75
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 107 IIAGF-YPDSGEVFLSTLDMAGCETR 131
+AGF PDSGE+ LS + T
Sbjct: 49 CLAGFEQPDSGEISLSGKTIFSKNTN 74
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator
11S, hydrolase-HYD activator complex; 1.90A
{Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A
1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A
3jse_A 3jtl_A
Length = 233
Score = 29.1 bits (66), Expect = 0.81
Identities = 11/90 (12%), Positives = 27/90 (30%), Gaps = 11/90 (12%)
Query: 2 SLNDGGAIVAMAGKNCFAIGV-----DHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCA 56
++ G + M N + L+ Q K+ + ++ + GL A
Sbjct: 30 AVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIE------KIQLIDDYVAAVTSGLVA 83
Query: 57 DGMQFAEKMTLRTANYVASEQSPISPDTFA 86
D + + + S ++ +
Sbjct: 84 DARVLVDFARISAQQEKVTYGSLVNIENLV 113
Score = 28.8 bits (65), Expect = 1.2
Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 11/90 (12%)
Query: 2 SLNDGGAIVAMAGKNCFAIGV-----DHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCA 56
++ G + +A K+ + V L+ K+ Q+ H+ GL A
Sbjct: 34 AVRRGTTAIGIACKDGVVLAVDRRITSKLVKIRSIE------KIFQIDDHVAAATSGLVA 87
Query: 57 DGMQFAEKMTLRTANYVASEQSPISPDTFA 86
D ++ L Y + IS + A
Sbjct: 88 DARVLIDRARLEAQIYRLTYGEEISIEMLA 117
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C*
1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C*
3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C*
3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Length = 241
Score = 28.4 bits (64), Expect = 1.6
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 8/87 (9%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHL----LVQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
G V + GKNC +G + L T +KV ++ H+ L GL AD
Sbjct: 26 KRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITP----SKVSKIDSHVVLSFSGLNADSR 81
Query: 60 QFAEKMTLRTANYVASEQSPISPDTFA 86
EK + ++ + + P++ +
Sbjct: 82 ILIEKARVEAQSHRLTLEDPVTVEYLT 108
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus
influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G*
1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C*
1ht2_A* 1ned_A
Length = 174
Score = 27.6 bits (61), Expect = 2.0
Identities = 24/156 (15%), Positives = 45/156 (28%), Gaps = 12/156 (7%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLIN-PGLCADGMQFAEKMTL 67
IV++ +G D + G+ + KV ++ L G AD E
Sbjct: 3 IVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFER 62
Query: 68 RTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAG 127
+ + ++ EL T D E + T
Sbjct: 63 KLEMHQGHLLK----------SAVELAKDWRTDRALRKLEAMLIVADEKESLIITGIGDV 112
Query: 128 CETRKTDFVAGGSAQNMIMGIGESFWQ-PGLSPEQL 162
+ + +A GS N + + + LS ++
Sbjct: 113 VQPEEDQILAIGSGGNYALSAARALVENTELSAHEI 148
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine
residue, hydrolase; 2.10A {Thermotoga maritima} SCOP:
d.153.1.4
Length = 171
Score = 27.6 bits (61), Expect = 2.0
Identities = 23/156 (14%), Positives = 48/156 (30%), Gaps = 13/156 (8%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLIN-PGLCADGMQFAEKMTL 67
I+ + +G D + G + KV ++ L G AD M ++
Sbjct: 3 ILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEA 62
Query: 68 RTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAG 127
+ + + A+ EL T + D +F+ + +
Sbjct: 63 KLREWGGNLT----------KAAVELAKDWRTDRVLRRLEALLLVADKENIFIISGNGEV 112
Query: 128 CETRKTDFVAGGSAQNMIMGIGESFWQ-PGLSPEQL 162
+ D A GS + ++ + LS ++
Sbjct: 113 IQPDD-DAAAIGSGGPYALAAAKALLRNTDLSAREI 147
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 27.7 bits (62), Expect = 2.4
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 107 IIAGFYPDSGEVFL 120
I+G P SG +F+
Sbjct: 49 AISGLLPYSGNIFI 62
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B
1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A*
2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A*
3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Length = 250
Score = 27.2 bits (61), Expect = 3.8
Identities = 12/84 (14%), Positives = 25/84 (29%), Gaps = 6/84 (7%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G + + N I + ++E +KV ++P + + G+ D +K
Sbjct: 31 GVTSLGIKATNGVVIATEKK-SSSPLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKS 89
Query: 66 TLRT---ANYVASEQSPISPDTFA 86
R +Y
Sbjct: 90 --RKVAHTSYKRIYGEYPPTKLLV 111
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 27.5 bits (61), Expect = 4.1
Identities = 21/100 (21%), Positives = 34/100 (34%), Gaps = 26/100 (26%)
Query: 117 EVFLSTLDMAGCETRKTD---FVAGGSAQNMIMGIGES--FWQPGLS------PEQL-FE 164
EV + D+ E K F + I I E+ + L P+ L F+
Sbjct: 925 EVIVEE-DLEPFEASKETAEQFKHQHGDKVDIFEIPETGEYSVKLLKGATLYIPKALRFD 983
Query: 165 VCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
V A + +GW A Y + I +++D
Sbjct: 984 R--LV---AGQ--IPTGWNAKTYGIS------DDIISQVD 1010
>3qz4_A Endo-1,4-beta-xylanase D; 5-bladed beta-propeller fold, xylan
degradation, structural joint center for structural
genomics, JCSG; HET: EPE; 1.74A {Bacteroides
thetaiotaomicron}
Length = 311
Score = 26.9 bits (60), Expect = 4.9
Identities = 6/16 (37%), Positives = 8/16 (50%), Gaps = 1/16 (6%)
Query: 105 NPIIAGFYPD-SGEVF 119
NPI+ GF+ D
Sbjct: 8 NPILPGFHADPEVLYS 23
>1bx4_A Protein (adenosine kinase); human adenosine kinase, transferase;
HET: ADN; 1.50A {Homo sapiens} SCOP: c.72.1.1 PDB:
2i6a_A* 2i6b_A*
Length = 345
Score = 26.1 bits (58), Expect = 9.4
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 129 ETRKTDFVAGGSAQNMIMGIGESFWQPGLS 158
+ K ++ AGGS QN I QP +
Sbjct: 54 KKFKVEYHAGGSTQNSIKVAQWMIQQPHKA 83
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.409
Gapped
Lambda K H
0.267 0.0569 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,176,789
Number of extensions: 180166
Number of successful extensions: 471
Number of sequences better than 10.0: 1
Number of HSP's gapped: 416
Number of HSP's successfully gapped: 65
Length of query: 204
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 115
Effective length of database: 4,216,824
Effective search space: 484934760
Effective search space used: 484934760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.3 bits)