RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1779
(204 letters)
>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 204
Score = 120 bits (301), Expect = 8e-35
Identities = 72/204 (35%), Positives = 106/204 (51%), Gaps = 2/204 (0%)
Query: 1 MSLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQ 60
MS N GGA++AM GKNC AI D + K+ M LY+ GL D
Sbjct: 3 MSYN-GGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQT 61
Query: 61 FAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFL 120
A+++ R Y E I P T ++ + LY ++ P + P+IAG P + + F+
Sbjct: 62 VAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFG-PYYTEPVIAGLDPKTFKPFI 120
Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKS 180
+LD+ GC DFV G+ + G+ ES W+P + P+ LFE SQ ++ A +RD S
Sbjct: 121 CSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAVS 180
Query: 181 GWGATVYVVEPDKVTIRKIATRMD 204
G G V+++E DK+T R + RMD
Sbjct: 181 GMGVIVHIIEKDKITTRTLKARMD 204
>d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 204
Score = 114 bits (285), Expect = 2e-32
Identities = 74/203 (36%), Positives = 109/203 (53%), Gaps = 3/203 (1%)
Query: 2 SLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQF 61
S+N GG +VAM GK+C AI D L ++ K+ H++L GL D
Sbjct: 5 SIN-GGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTL 62
Query: 62 AEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLS 121
E +T Y E+ I P+TF + S LY R+ P F+ P++AG SG+ F++
Sbjct: 63 NEMFRYKTNLYKLKEERAIEPETFTQLVSSSLYERRFG-PYFVGPVVAGINSKSGKPFIA 121
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
D+ GC DF+ G+A + + G+ ES ++P L PE LFE SQ ++ A +RD SG
Sbjct: 122 GFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADRDALSG 181
Query: 182 WGATVYVVEPDKVTIRKIATRMD 204
WGA VY+++ D+V R + R D
Sbjct: 182 WGAVVYIIKKDEVVKRYLKMRQD 204
>d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 222
Score = 100 bits (249), Expect = 7e-27
Identities = 46/218 (21%), Positives = 80/218 (36%), Gaps = 19/218 (8%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
++GG I+ +AG++ + D + + YE KV ++ + G ADG +
Sbjct: 7 DNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVK 66
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ Y AA L K P +++ IIAG D G+ + +
Sbjct: 67 RFKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDED-GKGAVYSF 125
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFW-----------------QPGLSPEQLFEVC 166
D G + AGG+A ++IM ++ LS E++ ++
Sbjct: 126 DPVGS-YEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIKLV 184
Query: 167 SQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
A ER + G G + +V D V + D
Sbjct: 185 RDSFTSATERHIQVGDGLEILIVTKDGVRKEFYELKRD 222
>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 213
Score = 95.7 bits (237), Expect = 3e-25
Identities = 45/210 (21%), Positives = 84/210 (40%), Gaps = 12/210 (5%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
+GG I+A+AG++ + D L +G K ++++ + G D + +
Sbjct: 7 FNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 66
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
+ R Y S ++ AA+ S LY+R+ P ++ II G + S
Sbjct: 67 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRF-FPYYVYNIIGGLDEEGKGAVYS-- 123
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGE---------SFWQPGLSPEQLFEVCSQVVIQAC 174
++ F AGGSA M+ + + + LS ++ + V I A
Sbjct: 124 FDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAA 183
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
ERD +G + +V + + ++ R D
Sbjct: 184 ERDVYTGDALRICIVTKEGIREETVSLRKD 213
>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 202
Score = 95.2 bits (236), Expect = 4e-25
Identities = 40/191 (20%), Positives = 76/191 (39%), Gaps = 4/191 (2%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
I+A+ +G D G + +K+ + ++ G AD A+ +T +
Sbjct: 3 IMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQ 62
Query: 69 TANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGC 128
+ P T A++ Y + L IIAG+ P G + ++ M G
Sbjct: 63 LGFHSIELNEPPLVHTAASLFKEMCYRYR--EDLMAGIIIAGWDPQEGG-QVYSVPMGGM 119
Query: 129 ETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYV 188
R+ F GGS + I G ++ ++ G++ E+ + + + A ERD SG +
Sbjct: 120 MVRQ-SFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAA 178
Query: 189 VEPDKVTIRKI 199
+ V + +
Sbjct: 179 IAESGVERQVL 189
>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 198
Score = 94.8 bits (235), Expect = 4e-25
Identities = 36/188 (19%), Positives = 78/188 (41%), Gaps = 2/188 (1%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
I+ + ++ + + +G + + ++K Q+SPH + G D +QFAE +
Sbjct: 4 ILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQAN 63
Query: 69 TANYVASEQSPISPDTFAAIASWELYARKLT-SPLFINPIIAGFYPDSGEVFLSTLDMAG 127
Y E +SP ++ EL + P +N +I G+ + L +D G
Sbjct: 64 IQLYSIREDYELSPQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLG 123
Query: 128 CETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVY 187
+ + + A G + + + ++P ++ E+ ++ V + +R G V
Sbjct: 124 TKV-ELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLLKLCVQELEKRMPMDFKGVIVK 182
Query: 188 VVEPDKVT 195
+V+ D +
Sbjct: 183 IVDKDGIR 190
>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 202
Score = 92.6 bits (229), Expect = 3e-24
Identities = 36/188 (19%), Positives = 72/188 (38%), Gaps = 3/188 (1%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
V + K+ + + G+F ++ K++Q++ + + G D A + +
Sbjct: 3 TVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIE 62
Query: 69 TANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGC 128
Y + + A + L P + +I G DS + ++D G
Sbjct: 63 ANLYEIRRERKPTVRAIATLT-SNLLNSYRYFPYLVQLLIGGI--DSEGKSIYSIDPIGG 119
Query: 129 ETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYV 188
+ D VA GS G+ E + P + ++ E+ + + A +RD+ SG G V
Sbjct: 120 AIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVK 179
Query: 189 VEPDKVTI 196
+ D+
Sbjct: 180 ITEDEFYQ 187
>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 205
Score = 88.6 bits (219), Expect = 1e-22
Identities = 37/194 (19%), Positives = 72/194 (37%), Gaps = 5/194 (2%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G +I+A+ K+ +G D G + +K+ ++ ++ G AD A+ +
Sbjct: 9 GASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIV 68
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
Y + +P + T A++ Y K L I+AG+ + + +
Sbjct: 69 QYHLELYTSQYGTPSTE-TAASVFKELCYENK--DNLTAGIIVAGYDDKNKGEVYTI-PL 124
Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
G K + GS I G + ++ +S E+ + + QA + D SG
Sbjct: 125 GGS-VHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGVIR 183
Query: 186 VYVVEPDKVTIRKI 199
+ V+ V
Sbjct: 184 MVVLTAAGVERLIF 197
>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 201
Score = 87.9 bits (217), Expect = 2e-22
Identities = 38/188 (20%), Positives = 71/188 (37%), Gaps = 4/188 (2%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
+A ++ + D G + ++ KV +++P+L G AD + + +
Sbjct: 3 TLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQ 62
Query: 69 TANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGC 128
Y + IS + + + +Y K L + +I G+ D L +D G
Sbjct: 63 CRIYELRNKERISVAAASKLLANMVYQYK-GMGLSMGTMICGW--DKRGPGLYYVDSEGN 119
Query: 129 ETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYV 188
F + GS G+ + + L EQ +++ + + QA RD SG +Y
Sbjct: 120 RISGATF-SVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYH 178
Query: 189 VEPDKVTI 196
V D
Sbjct: 179 VREDGWIR 186
>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 86.7 bits (214), Expect = 6e-22
Identities = 38/188 (20%), Positives = 70/188 (37%), Gaps = 3/188 (1%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
+A + + VD G++ ++ +V +++P L G AD + + +
Sbjct: 3 TLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQ 62
Query: 69 TANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGC 128
+ E+ IS A+ L + + L + +I G+ G D G
Sbjct: 63 CRLHELREKERISVA-AASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYV-DSDGT 120
Query: 129 ETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYV 188
+ D GS Q G+ +S ++ LS E + + ++ A RD SG +Y
Sbjct: 121 RLKG-DIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYH 179
Query: 189 VEPDKVTI 196
V D
Sbjct: 180 VTEDGWIY 187
>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 199
Score = 85.7 bits (211), Expect = 2e-21
Identities = 33/189 (17%), Positives = 75/189 (39%), Gaps = 3/189 (1%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
++ + G + + D + + + +K+ +MS + L+ G D +QFAE +
Sbjct: 4 LIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKN 63
Query: 69 TANYVASEQSPISPDTFAA-IASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAG 127
Y +SP A + +P +N ++AG+ G +A
Sbjct: 64 VQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAA 123
Query: 128 CETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVY 187
K F A G + + I + ++ P +S E+ E+ + + + +R + +V
Sbjct: 124 LA--KAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKCLEELQKRFILNLPTFSVR 181
Query: 188 VVEPDKVTI 196
+++ + +
Sbjct: 182 IIDKNGIHD 190
>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic)
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 203
Score = 84.5 bits (208), Expect = 4e-21
Identities = 30/200 (15%), Positives = 74/200 (37%), Gaps = 9/200 (4%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
V + K+ + + + +F + + K+ Q+ + + GL D M
Sbjct: 3 TVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAE 62
Query: 69 TANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGC 128
Y + + + A + + + P + ++ G D+ S G
Sbjct: 63 LELYRLQRRVNMPIEAVATLL-SNMLNQVKYMPYMVQLLVGGI--DTAPHVFSIDAAGGS 119
Query: 129 ETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYV 188
+ + + GS + G+ ES + ++ ++ ++ + + A +RD+ SG V V
Sbjct: 120 V--EDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAV 177
Query: 189 VEPD----KVTIRKIATRMD 204
+ ++ +I +R+
Sbjct: 178 ITRKDGYVQLPTDQIESRIR 197
>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 84.8 bits (209), Expect = 5e-21
Identities = 28/198 (14%), Positives = 65/198 (32%), Gaps = 11/198 (5%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G ++++M N I D+L G ++ + + + G +D +
Sbjct: 8 GTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLL 67
Query: 66 TLRTANY-----VASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFL 120
+A + + P + +Y R+ N II +G+ FL
Sbjct: 68 KDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFL 127
Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFW-----QPGLSPEQLFEVCSQVVIQACE 175
+++ T + +A G +M + P + + E +
Sbjct: 128 RYVNL-LGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYY 186
Query: 176 RDTKSGWGATVYVVEPDK 193
RD +S ++ +++ +
Sbjct: 187 RDARSSRNFSLAIIDKNT 204
>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 222
Score = 84.1 bits (207), Expect = 9e-21
Identities = 38/185 (20%), Positives = 68/185 (36%), Gaps = 5/185 (2%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
IV + N I D QG + K+H++SP ++ G AD + +
Sbjct: 3 IVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSN 62
Query: 69 TANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGC 128
+ + + L+ + ++ I+AG D L ++ G
Sbjct: 63 IELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAYL--IVAGV--DPTGSHLFSIHAHGS 118
Query: 129 ETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYV 188
T +++ GS M + ES W+ L+ E+ ++ S + D SG V V
Sbjct: 119 -TDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCV 177
Query: 189 VEPDK 193
+E K
Sbjct: 178 MEIGK 182
>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 217
Score = 83.7 bits (206), Expect = 1e-20
Identities = 34/196 (17%), Positives = 66/196 (33%), Gaps = 5/196 (2%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G +++ + + I D L G +++ +++ L G AD + +
Sbjct: 8 GTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVL 67
Query: 66 TLRTANYVASEQS-PISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
+ SP + + +Y+R+ N ++ G Y GE FL +D
Sbjct: 68 GQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGY-ADGESFLGYVD 126
Query: 125 MAGCETRKTDFVAGGSAQNMIMGI--GESFWQPGLSPEQLFEVCSQVVIQACERDTKSGW 182
M + +A G + + QP LS + ++ + + RD +S
Sbjct: 127 M-LGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYRDARSYN 185
Query: 183 GATVYVVEPDKVTIRK 198
V V I
Sbjct: 186 RFQTATVTEKGVEIEG 201
>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic)
{Rhodococcus erythropolis [TaxId: 1833]}
Length = 224
Score = 83.4 bits (205), Expect = 2e-20
Identities = 34/198 (17%), Positives = 64/198 (32%), Gaps = 9/198 (4%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
IVA+ K + D QG+ + KV+ + G ++ +
Sbjct: 3 IVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVE 62
Query: 69 TANYVASEQSPISPDTFAAIAS--WELYARKLTSPLFINPIIAGFYPDS------GEVFL 120
+Y E P++ D A + L + P++ G+ D+ G +
Sbjct: 63 LEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVS 122
Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKS 180
+ E R + A GS + + P E + + A + D+ +
Sbjct: 123 YDVVGGRYEER-AGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSAT 181
Query: 181 GWGATVYVVEPDKVTIRK 198
G + P VTI +
Sbjct: 182 GGPDLTRGIYPTAVTITQ 199
>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 220
Score = 81.7 bits (201), Expect = 7e-20
Identities = 33/188 (17%), Positives = 69/188 (36%), Gaps = 5/188 (2%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
I + K+ +G D +G + +K+H +SP++Y G AD + ++
Sbjct: 3 IAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSN 62
Query: 69 TANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGC 128
+ S T + L+ + + ++ G D L ++ G
Sbjct: 63 LELHSLSTGRLPRVVTANRMLKQMLFRYR--GYIGAALVLGGV--DVTGPHLYSIYPHGS 118
Query: 129 ETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYV 188
+ +V GS M + E ++P + E+ + S+ + D SG + V
Sbjct: 119 TDK-LPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCV 177
Query: 189 VEPDKVTI 196
+ +K+
Sbjct: 178 ISKNKLDF 185
>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 75.1 bits (184), Expect = 3e-17
Identities = 22/194 (11%), Positives = 61/194 (31%), Gaps = 7/194 (3%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
G V + + ++ Y+ K+ + H+ L GL D +
Sbjct: 29 KQGSVTVGLRSNTHAVLVALKRNADE---LSSYQKKIIKCDEHMGLSLAGLAPDARVLSN 85
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTS---PLFINPIIAGFYPDSGEVFL 120
+ + ++ + + + + P + +I G+ +
Sbjct: 86 YLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGAHLLE 145
Query: 121 STLDMAGCETRKTDFVAGG-SAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
E T A A+ + ++F + +P++L + + + Q+ ++
Sbjct: 146 FQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSLRDESL 205
Query: 180 SGWGATVYVVEPDK 193
+ ++ +V D
Sbjct: 206 TVDNLSIAIVGKDT 219
>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 244
Score = 72.0 bits (176), Expect = 3e-16
Identities = 18/199 (9%), Positives = 56/199 (28%), Gaps = 5/199 (2%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
+ G + + + + + + K+++++ + + GL AD
Sbjct: 29 SHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILIN 88
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTS---PLFINPIIAGFYPDSGEVFL 120
+ NY+ + I + S P ++ I AG+ G
Sbjct: 89 TARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLY 148
Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKS 180
++ K V + + + + ++ + + E+ + + + + +
Sbjct: 149 TSNPSGNYTGWKAISVGANT--SAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALT 206
Query: 181 GWGATVYVVEPDKVTIRKI 199
+
Sbjct: 207 YDRLEFATIRKGANDGEVY 225
>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 234
Score = 72.0 bits (176), Expect = 4e-16
Identities = 27/196 (13%), Positives = 64/196 (32%), Gaps = 13/196 (6%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G + + + V+ + K+ ++ H+ GL AD +K
Sbjct: 27 GSTAIGIQTSEGVCLAVEKRITSP-LMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKA 85
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYA--------RKLTSPLFINPIIAGFYPDSGE 117
+ T N+ + ++ ++ S ++ P + + G D
Sbjct: 86 RVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGV--DEKG 143
Query: 118 VFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERD 177
L +D +G + D A GSA + + ++ ++ + ++ Q E
Sbjct: 144 PQLFHMDPSGTFV-QCDARAIGSASEGAQSSLQELYHKSMTLKEAIKSSLIILKQVMEEK 202
Query: 178 TKSGWGATVYVVEPDK 193
+ + V+P +
Sbjct: 203 L-NATNIELATVQPGQ 217
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 250
Score = 71.3 bits (174), Expect = 8e-16
Identities = 19/193 (9%), Positives = 61/193 (31%), Gaps = 4/193 (2%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
G + + + + + + + K+++++ + G+ +D
Sbjct: 28 GHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTN 87
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTS---PLFINPIIAGFYPDSGEVFL 120
++ L Y+ Q PI + A P ++ + G+ G L
Sbjct: 88 ELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYG-FQL 146
Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKS 180
D +G G ++ + + + + + ++ + + +V+ + + S
Sbjct: 147 YQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLS 206
Query: 181 GWGATVYVVEPDK 193
+ + +
Sbjct: 207 AEKVEIATLTREN 219
>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 245
Score = 69.3 bits (169), Expect = 4e-15
Identities = 25/199 (12%), Positives = 61/199 (30%), Gaps = 6/199 (3%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
+ + + K+ GV+ LV ++ + H+ + GL AD A+
Sbjct: 31 ENSSTAIGIRCKDGVVFGVEK-LVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLAD 89
Query: 64 KMTLRTANYVASEQSPISPD---TFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFL 120
+N+ ++ I A+ P + ++ Y + L
Sbjct: 90 IAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGS-YSVNDGAQL 148
Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKS 180
+D +G + A G A+ E ++ + + ++++ +
Sbjct: 149 YMIDPSGV-SYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDK 207
Query: 181 GWGATVYVVEPDKVTIRKI 199
+ + V +I
Sbjct: 208 AFELELSWVGELTNGRHEI 226
>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 243
Score = 67.0 bits (163), Expect = 2e-14
Identities = 28/199 (14%), Positives = 62/199 (31%), Gaps = 9/199 (4%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
G + + K + D + + K++++ H+ GL AD +
Sbjct: 29 KRGATAIGIKCKEGVILIADKRVGSK-LLEKDTIEKIYKIDEHICAATSGLVADARVLID 87
Query: 64 KMTLRTANYVASEQSPISPD---TFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFL 120
+ + + PI+ + P ++ +IAG L
Sbjct: 88 RARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVNEVP---KL 144
Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKS 180
D +G + A G + + E ++ LS + + + + E +
Sbjct: 145 YETDPSGALL-EYKATAIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVP 203
Query: 181 GWGATVYVVEPDKVTIRKI 199
V V+ D T +++
Sbjct: 204 E-NIEVGYVKVDDRTFKEV 221
>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 241
Score = 65.8 bits (160), Expect = 7e-14
Identities = 35/196 (17%), Positives = 70/196 (35%), Gaps = 10/196 (5%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
G V + GKNC +G + +KV ++ H+ L GL AD E
Sbjct: 26 KRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIE 85
Query: 64 KMTLRTANYVASEQSPISPDTFAAIAS---WELYARKLTSPLFINPIIAGFYPDSGEVFL 120
K + ++ + + P++ + + P ++ +IAGF P E L
Sbjct: 86 KARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKL 145
Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQP---GLSPEQLFEVCSQVVIQACERD 177
+ +G + G + E + + E+ ++ + +++ +
Sbjct: 146 YQTEPSGIYSS-WSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQTG 204
Query: 178 TKSGWGATVYVVEPDK 193
K + VV+PD
Sbjct: 205 AK---NIEITVVKPDS 217
>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 250
Score = 64.0 bits (155), Expect = 4e-13
Identities = 29/196 (14%), Positives = 60/196 (30%), Gaps = 8/196 (4%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G + + N I + ++E +KV ++P + + G+ D +K
Sbjct: 31 GVTSLGIKATNGVVIATEKKSSSP-LAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKS 89
Query: 66 -TLRTANYVASEQSPISPDTFA---AIASWELYARKLTSPLFINPIIAGFYPDSGEVFLS 121
+ +Y A E P ++ +IAG +G L
Sbjct: 90 RKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNG-FSLY 148
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
+D +G A G E W L E + + ++ E + +G
Sbjct: 149 QVDPSGS-YFPWKATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEGEF-NG 206
Query: 182 WGATVYVVEPDKVTIR 197
+ ++ + +
Sbjct: 207 DTIELAIIGDENPDLL 222
>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 233
Score = 63.2 bits (153), Expect = 5e-13
Identities = 26/192 (13%), Positives = 47/192 (24%), Gaps = 4/192 (2%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G V + N + + +KV ++ H+ L+ G+ D +
Sbjct: 31 GAPSVGIKAANGVVLATEKKQKSI-LYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRA 89
Query: 66 TLRTANYVASEQSPISPDTFAA-IASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
Y Q PI +AS + + + G +L D
Sbjct: 90 RKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSD 149
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
+G A G E + L E + ++ E
Sbjct: 150 PSGAYF-AWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTED-NI 207
Query: 185 TVYVVEPDKVTI 196
V +
Sbjct: 208 EVGICNEAGFRR 219
>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 242
Score = 62.8 bits (152), Expect = 8e-13
Identities = 29/197 (14%), Positives = 61/197 (30%), Gaps = 13/197 (6%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G + +A K +GV+ ++ K+ ++ H+ GL AD E
Sbjct: 26 GSTAIGIATKEGVVLGVEKRATSP-LLESDSIEKIVEIDRHIGCAMSGLTADARSMIEHA 84
Query: 66 TLRTANYVASEQSPISPDTFAAIAS---------WELYARKLTSPLFINPIIAGFYPDSG 116
+ I+ ++ R ++ P + +IAG D
Sbjct: 85 RTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADD- 143
Query: 117 EVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACER 176
L + +G + + A GS + W L+ ++ + +++ Q E
Sbjct: 144 GYQLFHAEPSGTFY-RYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQVMEE 202
Query: 177 DTKSGWGATVYVVEPDK 193
A + +
Sbjct: 203 K-LDENNAQLSCITKQD 218
>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 243
Score = 62.8 bits (152), Expect = 9e-13
Identities = 32/203 (15%), Positives = 57/203 (28%), Gaps = 14/203 (6%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
+A+ GK+C + V + + +S + ++ G D A
Sbjct: 28 QTNINSLAVRGKDCTVVISQK-KVPDKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAAL 86
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTS---PLFINPIIAGFYPDSGEVFL 120
+ A + + D A + + PL + + G +
Sbjct: 87 RAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGP-SI 145
Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSP-------EQLFEVCSQVVIQA 173
D AG A G Q I E+ ++ E++ E +I A
Sbjct: 146 YKTDPAGY-YVGYKATATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDA 204
Query: 174 CERDTKSGWGATVYVVEPDKVTI 196
+ S V V DK
Sbjct: 205 LGTEF-SKNDLEVGVATKDKFFT 226
>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit
(non-catalytic) {Archaeon Thermoplasma acidophilum
[TaxId: 2303]}
Length = 221
Score = 62.0 bits (150), Expect = 1e-12
Identities = 27/194 (13%), Positives = 62/194 (31%), Gaps = 7/194 (3%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
G + M N + D V+ K+ + ++ + GL AD +
Sbjct: 22 GSTALGMKFANGVLLISDKK-VRSRLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFA 80
Query: 66 TLRTANYVASEQSPISPDTFAAIASWELYARKLTS---PLFINPIIAGFYPDSGEVFLST 122
+ + S ++ + + ++ P ++ I AG L
Sbjct: 81 RISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQI--GPRLFD 138
Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGW 182
D AG + A GS ++ ++ E ++ L ++ + + + + E +
Sbjct: 139 CDPAGTIN-EYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGEELKA 197
Query: 183 GATVYVVEPDKVTI 196
+ +K I
Sbjct: 198 PEIASITVGNKYRI 211
>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 238
Score = 57.0 bits (137), Expect = 1e-10
Identities = 24/196 (12%), Positives = 56/196 (28%), Gaps = 12/196 (6%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
G A V + K + +A ++ K+ + H+ + GL AD
Sbjct: 27 KQGSATVGLKSKTHAVLVALKRAQSE---LAAHQKKILHVDNHIGISIAGLTADARLLCN 83
Query: 64 KMTLRTANYVASEQSPISPD---TFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFL 120
M + P+ + + R P + +IAG+ D +
Sbjct: 84 FMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGY--DDMGPHI 141
Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPG--LSPEQLFEVCSQVVIQACERDT 178
+ ++ G+ E + +L + + + + +
Sbjct: 142 FQTCPSAN-YFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQ 200
Query: 179 K-SGWGATVYVVEPDK 193
+ ++ +V D
Sbjct: 201 DLTTKNVSIGIVGKDL 216
>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Rhodococcus erythropolis [TaxId: 1833]}
Length = 227
Score = 55.4 bits (133), Expect = 3e-10
Identities = 19/199 (9%), Positives = 53/199 (26%), Gaps = 19/199 (9%)
Query: 3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
+ G ++V + ++ + + +KV ++ L G +
Sbjct: 16 IARGRSVVVLTFRDGVLFVAE--------NPSTALHKVSELYDRLGFAAVGKYNEFENLR 67
Query: 63 EKMTLRTANY-VASEQSPISPDTFAAIAS--WELYARKLTSPLFINPIIAGFYPDS--GE 117
+ + ++ ++ + A + + P + +A
Sbjct: 68 RAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKA 127
Query: 118 VFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERD 177
L + G + FV G I ++ L E + + Q +
Sbjct: 128 PQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADLDLEAAVGIAVNALRQGGAGE 187
Query: 178 TKSGWGATVYVVEPDKVTI 196
+ V+ + +
Sbjct: 188 GEKR------NVDVASLEV 200
>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 244
Score = 53.1 bits (127), Expect = 3e-09
Identities = 35/201 (17%), Positives = 60/201 (29%), Gaps = 9/201 (4%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
G VA+ GK+C I + + + +++ ++ + G+ AD +
Sbjct: 33 QGGLTSVAVRGKDCAVIVTQKKVPDK-LLDSSTVTHLFKITENIGCVMTGMTADSRSQVQ 91
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTS---PLFINPIIAGFYPDSGEVFL 120
+ AN+ I D + + PL I+ G + G +
Sbjct: 92 RARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGP-QV 150
Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFW--QPGLSPEQLFEVCSQVVIQACERDT 178
D AG A G Q E + + EQ E + D
Sbjct: 151 YKCDPAGY-YCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDF 209
Query: 179 KSGWGATVYVVEPDKVTIRKI 199
K V VV + R +
Sbjct: 210 KPS-EIEVGVVTVENPKFRIL 229
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 51.6 bits (123), Expect = 8e-09
Identities = 28/193 (14%), Positives = 57/193 (29%), Gaps = 7/193 (3%)
Query: 4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
G V + G++ +GV+ K+ + ++ + GL AD
Sbjct: 26 KKGSTAVGVRGRDIVVLGVEK-KSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVIN 84
Query: 64 KMTLRTANYVASEQSPISPDTFAAIAS---WELYARKLTSPLFINPIIAGFYPDSGEVFL 120
+ + ++ + + P++ + + P I+ +I GF D L
Sbjct: 85 RARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTP-RL 143
Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKS 180
D +G A G + E + V+ E
Sbjct: 144 YQTDPSGT-YHAWKANAIGRGAKSVREFLEKNYTDEAIETDD-LTIKLVIKALLEVVQSG 201
Query: 181 GWGATVYVVEPDK 193
G + V+ D+
Sbjct: 202 GKNIELAVMRRDQ 214
>d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima
[TaxId: 2336]}
Length = 171
Score = 48.2 bits (114), Expect = 7e-08
Identities = 20/192 (10%), Positives = 48/192 (25%), Gaps = 24/192 (12%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
I+ + +G D + G + KV ++ L
Sbjct: 3 ILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEA 62
Query: 69 TANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGC 128
+ + + + + R D +F+ + +
Sbjct: 63 KLREWGGNLTKAAVELAKDWRTDRVLRR---------LEALLLVADKENIFIISGNGEVI 113
Query: 129 ETRKTDFVAGGSAQNMIMGIGESFWQ-PGLSPEQLFEVCSQVVIQACERDTKSGWGATVY 187
+ D A GS + ++ + LS E+ + + A E +
Sbjct: 114 QPDD-DAAAIGSGGPYALAAAKALLRNTDLSAR---EIVEKAMTIAGEICIYTN------ 163
Query: 188 VVEPDKVTIRKI 199
+ I ++
Sbjct: 164 ----QNIVIEEV 171
>d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis
[TaxId: 1423]}
Length = 180
Score = 42.5 bits (99), Expect = 7e-06
Identities = 29/187 (15%), Positives = 51/187 (27%), Gaps = 13/187 (6%)
Query: 6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIA-EYENKVHQMSPHLYLIN-PGLCADGMQFAE 63
I A+ K A+ D + G + KV ++ L G AD E
Sbjct: 5 ATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFE 64
Query: 64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
K + Y + + + RKL + L + +
Sbjct: 65 KFEAKLEEYNGNLKRAAVELAKEWRSDK--VLRKLEAMLIVMNQDTLLLVSGTGEVIEPD 122
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWG 183
D +A GS N + G + + E+ + A E +
Sbjct: 123 DG---------ILAIGSGGNYALAAGRALKKHAGESMSASEIARAALETAGEICVYTNDQ 173
Query: 184 ATVYVVE 190
+ +E
Sbjct: 174 IILEELE 180
>d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus influenzae
[TaxId: 727]}
Length = 173
Score = 34.4 bits (78), Expect = 0.004
Identities = 29/192 (15%), Positives = 52/192 (27%), Gaps = 23/192 (11%)
Query: 9 IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
IV++ +G D + G+ + KV ++ L A+ TL
Sbjct: 3 IVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKV-----LAGFAGGTADAFTLF 57
Query: 69 TANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGC 128
E A EL T D E + T
Sbjct: 58 ELFERKLEMHQGHLLKSA----VELAKDWRTDRALRKLEAMLIVADEKESLIITGIGDVV 113
Query: 129 ETRKTDFVAGGSAQNMIMGIGESFWQ-PGLSPEQLFEVCSQVVIQACERDTKSGWGATVY 187
+ + +A GS N + + + LS E+ + + A + +
Sbjct: 114 QPEEDQILAIGSGGNYALSAARALVENTELSAH---EIVEKSLRIAGDICVFTN------ 164
Query: 188 VVEPDKVTIRKI 199
TI ++
Sbjct: 165 ----TNFTIEEL 172
>d2exha2 b.67.2.1 (A:3-324) Beta-D-xylosidase N-terminal domain
{Geobacillus stearothermophilus [TaxId: 1422]}
Length = 322
Score = 26.4 bits (57), Expect = 2.8
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 105 NPIIAGFYPD 114
NPI+ GF+PD
Sbjct: 4 NPILTGFHPD 13
>d1yrza2 b.67.2.1 (A:1004-1320) Beta-D-xylosidase N-terminal domain
{Bacillus halodurans [TaxId: 86665]}
Length = 317
Score = 26.0 bits (56), Expect = 3.1
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 105 NPIIAGFYPD 114
NPI+ GF+PD
Sbjct: 4 NPILPGFHPD 13
>d1aola_ b.20.1.1 (A:) F-MuLV receptor-binding domain {Friend murine
leukemia virus [TaxId: 11795]}
Length = 228
Score = 25.8 bits (56), Expect = 3.2
Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 7/80 (8%)
Query: 127 GCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG----- 181
GCET + S+ + I + + + C+ + IQ +
Sbjct: 137 GCETTGRVYWKPSSSWDYITVDNNLTTSQAVQVCKDNKWCNPLAIQFTNAGKQVTSWTTG 196
Query: 182 --WGATVYVVEPDKVTIRKI 199
WG +YV D I
Sbjct: 197 HYWGLRLYVSGRDPGLTFGI 216
>d1y7ba2 b.67.2.1 (A:4-324) Beta-D-xylosidase N-terminal domain
{Clostridium acetobutylicum [TaxId: 1488]}
Length = 321
Score = 26.1 bits (56), Expect = 3.4
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 105 NPIIAGFYPD 114
NPI+ GF PD
Sbjct: 3 NPILRGFNPD 12
>d2ipqx1 a.4.5.74 (X:396-528) Hypothetical protein STY4665
{Salmonella typhi [TaxId: 90370]}
Length = 133
Score = 24.8 bits (54), Expect = 6.0
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 26 LVQGDFTIAEYENKVHQMSPHLYLINPGL 54
L +GD + + VH +++ PG+
Sbjct: 18 LREGDIPVNTADACVHLTCGFVFISVPGV 46
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 24.9 bits (54), Expect = 6.8
Identities = 4/26 (15%), Positives = 8/26 (30%)
Query: 107 IIAGFYPDSGEVFLSTLDMAGCETRK 132
+AG G + + + K
Sbjct: 44 RMAGMTSGKGSIQFAGQPLEAWSATK 69
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain
{Archaeon Thermoplasma acidophilum, beta chain [TaxId:
2303]}
Length = 243
Score = 24.7 bits (53), Expect = 8.8
Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 4/81 (4%)
Query: 92 ELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGES 151
E +A + AG P + L G +T + G + G+
Sbjct: 158 EKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNKTYGINVFTGEIEDMVKNGV--- 214
Query: 152 FWQPGLSPEQLFEVCSQVVIQ 172
+P +Q E ++ I
Sbjct: 215 -IEPIRVGKQAIESATEAAIM 234
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.409
Gapped
Lambda K H
0.267 0.0493 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 758,555
Number of extensions: 32482
Number of successful extensions: 144
Number of sequences better than 10.0: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 46
Length of query: 204
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 123
Effective length of database: 1,295,466
Effective search space: 159342318
Effective search space used: 159342318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.0 bits)