Query psy17790
Match_columns 2564
No_of_seqs 1105 out of 5420
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 23:09:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17790.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17790hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00111 C4 C-terminal tande 100.0 6.6E-46 1.4E-50 382.0 7.9 109 2218-2327 1-114 (114)
2 PF01413 C4: C-terminal tandem 100.0 2.7E-46 5.8E-51 385.6 2.1 109 2218-2327 1-114 (114)
3 PF01413 C4: C-terminal tandem 100.0 1.8E-45 4E-50 379.4 2.9 112 2329-2441 2-114 (114)
4 KOG3546|consensus 100.0 4.5E-39 9.8E-44 387.4 53.7 95 1636-1730 628-730 (1167)
5 smart00111 C4 C-terminal tande 100.0 3.8E-44 8.2E-49 369.1 7.3 112 2329-2441 2-114 (114)
6 KOG3546|consensus 100.0 2.7E-38 5.8E-43 380.7 55.8 127 1636-1762 687-828 (1167)
7 KOG3544|consensus 99.4 1.2E-11 2.5E-16 154.7 25.9 79 34-112 99-193 (327)
8 PF08744 NOZZLE: Plant transcr 48.1 17 0.00036 43.5 3.5 21 2429-2449 166-186 (314)
9 PF13945 NST1: Salt tolerance 34.4 4.5 9.8E-05 47.6 -3.7 41 2290-2330 106-153 (190)
10 PF01690 PLRV_ORF5: Potato lea 24.9 81 0.0017 41.9 4.6 66 2249-2328 44-111 (465)
11 PF09788 Tmemb_55A: Transmembr 23.4 1.9E+02 0.0041 35.9 6.9 35 2271-2328 61-95 (256)
12 KOG2242|consensus 21.7 1.6E+02 0.0036 40.6 6.7 72 2257-2328 304-380 (558)
No 1
>smart00111 C4 C-terminal tandem repeated domain in type 4 procollagens. Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
Probab=100.00 E-value=6.6e-46 Score=382.04 Aligned_cols=109 Identities=52% Similarity=1.029 Sum_probs=101.4
Q ss_pred cceEEEecCCCCCCCCCCCCCCCcccccceeeecCCccccCCCCCCCCCCCCCCCCceEeccCCCCcccCCCCCcceeec
Q psy17790 2218 GFFLTFHSQTDMEPECPRYTSKLWSGYSLLHISGDNKAHTQDLGSPGSCLPRFSTMPFLFCSLTQTCDYASRGDNSYWLS 2297 (2564)
Q Consensus 2218 g~~~~~HSQs~~iP~CP~g~~~lw~GyS~l~~~~~~~~~~QdLgs~GSCL~~f~t~pf~~C~~~~~C~y~~~~~~syWLs 2297 (2564)
+|||||||||++||+||.+|++||+||||||+++++++|+|||+||||||++||||||||||.+++||||+||+|||||+
T Consensus 1 ~~~~a~HSQt~~iP~CP~g~~~LW~GyS~l~~tg~~~g~gQdL~spGSCL~~F~~~Pfi~C~~~~~C~y~~rn~~SfWLs 80 (114)
T smart00111 1 GFVIAVHSQTTNVPQCPAGWVELWTGYSFLMHTGNGEGHGQDLGSPGSCLERFRTMPFIECNGRGVCNYASRNDYSFWLS 80 (114)
T ss_pred CceEEEecCCCCCCCCCCCCcccccceeEEEecCCCCccCCCCCCCccchhhhccCCeEEECCCCeecccccCCcceEEe
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccC-----cccccCCCCccccCcccccccccccc
Q psy17790 2298 STEP-----MLKTMEPIPSADLKKYVSRCSVCEST 2327 (2564)
Q Consensus 2298 t~~~-----~~~~~~p~~~~~~~~~iSRC~VC~~~ 2327 (2564)
|+++ +++.|+++.. +|++|||||+|||++
T Consensus 81 t~~~~~~f~~p~~~~~~~~-~~~~~ISRC~VC~~~ 114 (114)
T smart00111 81 TIEPSDQFTAPRPMTPKAG-DLRPYISRCQVCEKP 114 (114)
T ss_pred ccCccccccccccccccch-hhhhhccccceeecc
Confidence 9976 3444555555 899999999999984
No 2
>PF01413 C4: C-terminal tandem repeated domain in type 4 procollagen; InterPro: IPR001442 Collagens are major components of the extracellular matrices of all metazoan life and play crucial roles in developmental processes and tissue homeostasis. Collagens are composed of three polypeptide chains (alpha chains) that fold together to form the characteristic triple helical collagenous domain. Some types of triple helical protomers contain genetically identical alpha chains forming homotrimers, whereas others contain two or three different alpha chains forming heterotrimers. The sequences required to form a collagenous domain are Gly-X-Y repeats in which the X and Y positions are frequently proline and hydroxyproline. Glycine is required every third residue as it is the only amino acid small enough to pack into the central core of the triple helix. The triple helix-forming parts are surrounded by non-collagenous (NC) domains of variable sequence, size, and shape. Even if the triple helical parts represent the most striking feature of collagens, tissue specificity as well as defined binding of non-collagens seem to be encoded in the NC domains. The terminal NC domains are excised, modified, or incorporated directly into the final suprastructure, depending on protomer type and function [, ]. Type IV collagen is one of the major constituents of basement membranes, a specialised form of extracellular matrix underlying epithelia that compartmentalises tissues and provides molecular signals for influencing cell behaviour. Each type IV chain contains a long triple-helical collagenous domain flanked by a short 7S domain of 25 residues and a globular non-collagenous NC1 domain of ~230 residues at the N and C terminus, respectively. In protomer assembly, the NC1 domains (monomers) of three chains interact, forming an NC1 trimer, to select and register chains for triple helix formation. In network assembly, the NC1 trimers of two protomers interact, forming a NC1 hexamer structure, to select and connect protomers [, , ]. The collagen IV NC1 domain contains 12 cysteines, and all of them are involved in disulphide bonds. It folds into a tertiary structure with predominantly beta-strands. The collagen IV NC1 domain is composed of two similarly folded subdomains stabilised by 3 intrachain dissulphide bonds involving the following pairs: C1-C6, C2-C5, and C3-C4. Each subdomain represents a compact disulphide-stabilised triangular structure, from which a finger-like hairpin loop projects into an incompletely formed six-stranded beta-sheet of an adjacent subdomain of the same or of an adjacent chain clamping the subdomains tightly together [, , ]. This duplicated domain is present at the C-terminal of type 4 collagen, the major structural component of glomerular basement membranes (GMB) forming a 'chicken-wire' meshwork together with laminins, proteoglycans and entactin/nidogen. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.; GO: 0005201 extracellular matrix structural constituent, 0005581 collagen; PDB: 1T61_F 1M3D_L 1LI1_D.
Probab=100.00 E-value=2.7e-46 Score=385.56 Aligned_cols=109 Identities=54% Similarity=1.052 Sum_probs=88.0
Q ss_pred cceEEEecCCCCCCCCCCCCCCCcccccceeeecCCccccCCCCCCCCCCCCCCCCceEeccCCCCcccCCCCCcceeec
Q psy17790 2218 GFFLTFHSQTDMEPECPRYTSKLWSGYSLLHISGDNKAHTQDLGSPGSCLPRFSTMPFLFCSLTQTCDYASRGDNSYWLS 2297 (2564)
Q Consensus 2218 g~~~~~HSQs~~iP~CP~g~~~lw~GyS~l~~~~~~~~~~QdLgs~GSCL~~f~t~pf~~C~~~~~C~y~~~~~~syWLs 2297 (2564)
+|||||||||++||+||.+|++||+||||||+++++++|+|||+||||||++||||||||||.+++||||+ ||||||||
T Consensus 1 g~~ia~HSQt~~iP~CP~G~~~LW~GYSfl~~tg~~~~~gQdLgspGSCL~~F~~~Pfi~C~~~g~C~~~~-n~~S~WLs 79 (114)
T PF01413_consen 1 GFVIAVHSQTDQIPDCPPGWTSLWTGYSFLMHTGGGEGHGQDLGSPGSCLERFRTMPFIECNGRGTCNYAS-NDYSYWLS 79 (114)
T ss_dssp SEEEEEE-SSSS-----TTEEEEEEEEEEEEEEETTEEEE--TTSGGGEESSEESS-EEEEETTSEEEEST-T-EEEEEB
T ss_pred CeEEEEecCCCCCCcCCCchhHHhhhhhhhheecCCccccccccccchhHHHHhcCcceecCCCCcCCccC-CCcceeEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999 89999999
Q ss_pred cccC-----cccccCCCCccccCcccccccccccc
Q psy17790 2298 STEP-----MLKTMEPIPSADLKKYVSRCSVCEST 2327 (2564)
Q Consensus 2298 t~~~-----~~~~~~p~~~~~~~~~iSRC~VC~~~ 2327 (2564)
|+++ +++.|+++..++|++|||||+|||++
T Consensus 80 t~~~~~~f~~p~~~~~~~~~~~~~~ISRC~VC~~~ 114 (114)
T PF01413_consen 80 TIEPNDQFQMPMPMTPKAGEEIRSYISRCSVCEAN 114 (114)
T ss_dssp -S-CCCTTSS-TTEEEECCGCGGGGB-EEEEEEE-
T ss_pred ccCchhhccCCCCccccCccccccccccceEeecC
Confidence 9988 44445566666899999999999974
No 3
>PF01413 C4: C-terminal tandem repeated domain in type 4 procollagen; InterPro: IPR001442 Collagens are major components of the extracellular matrices of all metazoan life and play crucial roles in developmental processes and tissue homeostasis. Collagens are composed of three polypeptide chains (alpha chains) that fold together to form the characteristic triple helical collagenous domain. Some types of triple helical protomers contain genetically identical alpha chains forming homotrimers, whereas others contain two or three different alpha chains forming heterotrimers. The sequences required to form a collagenous domain are Gly-X-Y repeats in which the X and Y positions are frequently proline and hydroxyproline. Glycine is required every third residue as it is the only amino acid small enough to pack into the central core of the triple helix. The triple helix-forming parts are surrounded by non-collagenous (NC) domains of variable sequence, size, and shape. Even if the triple helical parts represent the most striking feature of collagens, tissue specificity as well as defined binding of non-collagens seem to be encoded in the NC domains. The terminal NC domains are excised, modified, or incorporated directly into the final suprastructure, depending on protomer type and function [, ]. Type IV collagen is one of the major constituents of basement membranes, a specialised form of extracellular matrix underlying epithelia that compartmentalises tissues and provides molecular signals for influencing cell behaviour. Each type IV chain contains a long triple-helical collagenous domain flanked by a short 7S domain of 25 residues and a globular non-collagenous NC1 domain of ~230 residues at the N and C terminus, respectively. In protomer assembly, the NC1 domains (monomers) of three chains interact, forming an NC1 trimer, to select and register chains for triple helix formation. In network assembly, the NC1 trimers of two protomers interact, forming a NC1 hexamer structure, to select and connect protomers [, , ]. The collagen IV NC1 domain contains 12 cysteines, and all of them are involved in disulphide bonds. It folds into a tertiary structure with predominantly beta-strands. The collagen IV NC1 domain is composed of two similarly folded subdomains stabilised by 3 intrachain dissulphide bonds involving the following pairs: C1-C6, C2-C5, and C3-C4. Each subdomain represents a compact disulphide-stabilised triangular structure, from which a finger-like hairpin loop projects into an incompletely formed six-stranded beta-sheet of an adjacent subdomain of the same or of an adjacent chain clamping the subdomains tightly together [, , ]. This duplicated domain is present at the C-terminal of type 4 collagen, the major structural component of glomerular basement membranes (GMB) forming a 'chicken-wire' meshwork together with laminins, proteoglycans and entactin/nidogen. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.; GO: 0005201 extracellular matrix structural constituent, 0005581 collagen; PDB: 1T61_F 1M3D_L 1LI1_D.
Probab=100.00 E-value=1.8e-45 Score=379.40 Aligned_cols=112 Identities=54% Similarity=1.082 Sum_probs=95.0
Q ss_pred chhhcccCCccCCCCCCCCccccccceeeEeecCCCCCCCCCCCCCCCCcCCCCCcccEEecCCCcccccCCCCceeeec
Q psy17790 2329 RAIAIHSQSVTIPSCPGGWEELWVGFSFLMHTDAGSGGGGQSLISPGSCLQDFRPTPFIQCHGVGSCNYYSTASSFWLAT 2408 (2564)
Q Consensus 2329 ~~~~~hsq~~~~p~cp~gw~~lw~Gysf~~~t~~g~~~~gq~l~s~gscl~~f~~~pfi~c~g~g~c~~~~~~~s~wl~~ 2408 (2564)
++||||||+++||+||.+|++||+||||+|||+ ++++++|+|+||||||++||++||||||++++||||+|.|||||+|
T Consensus 2 ~~ia~HSQt~~iP~CP~G~~~LW~GYSfl~~tg-~~~~~gQdLgspGSCL~~F~~~Pfi~C~~~g~C~~~~n~~S~WLst 80 (114)
T PF01413_consen 2 FVIAVHSQTDQIPDCPPGWTSLWTGYSFLMHTG-GGEGHGQDLGSPGSCLERFRTMPFIECNGRGTCNYASNDYSYWLST 80 (114)
T ss_dssp EEEEEE-SSSS-----TTEEEEEEEEEEEEEEE-TTEEEE--TTSGGGEESSEESS-EEEEETTSEEEESTT-EEEEEB-
T ss_pred eEEEEecCCCCCCcCCCchhHHhhhhhhhheec-CCccccccccccchhHHHHhcCcceecCCCCcCCccCCCcceeEEc
Confidence 579999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred CcCccccCCCcccccccc-CCCCceeeeEeeccc
Q psy17790 2409 LDDRDQWRKPRPQTLKAN-DLKTRISRCAVCLRR 2441 (2564)
Q Consensus 2409 ~~~~~~~~~p~~~~~~~~-~~~~~isrc~vc~~~ 2441 (2564)
+++++||++|+++|+|++ +|++|||||+|||||
T Consensus 81 ~~~~~~f~~p~~~~~~~~~~~~~~ISRC~VC~~~ 114 (114)
T PF01413_consen 81 IEPNDQFQMPMPMTPKAGEEIRSYISRCSVCEAN 114 (114)
T ss_dssp S-CCCTTSS-TTEEEECCGCGGGGB-EEEEEEE-
T ss_pred cCchhhccCCCCccccCccccccccccceEeecC
Confidence 999999999999999999 899999999999986
No 4
>KOG3546|consensus
Probab=100.00 E-value=4.5e-39 Score=387.37 Aligned_cols=95 Identities=45% Similarity=0.797 Sum_probs=66.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy17790 1636 GSMGALGEVGPKGFQGEPGPKGYAGLAGLPGLNGTHGWPGEPGPR--------GPPGVKGEPGMDGDPGLSGNPGIPGDR 1707 (2564)
Q Consensus 1636 G~~G~~G~pG~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~--------G~~G~~G~~G~~G~~G~~G~~G~~G~~ 1707 (2564)
+.++..|.+|++|++|..|++|..|.+|.+|.+|.+|++|++|.. -..|.+|++|+.|.+|..|.+|.+|+-
T Consensus 628 ~~pgp~g~pg~~gfpgp~gpkg~~g~~g~~g~~g~~gekgepg~i~s~d~~~~~~~g~kgepg~~g~pgp~g~pg~kge~ 707 (1167)
T KOG3546|consen 628 SVPGPEGRPGFAGFPGPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSPDALGPAQKGAKGEPGFRGPPGPYGRPGYKGEI 707 (1167)
T ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCccccCCCCcChhhcccCCCCCCCCCCCCCCCCCccccc
Confidence 455666666666666666666666666666666677777776632 235667777777777777777777777
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC
Q psy17790 1708 GPRGGPGLSGAPGPKGEPGDIGL 1730 (2564)
Q Consensus 1708 G~~G~~G~~G~~G~~G~~G~~G~ 1730 (2564)
|.+|.+|.+|..|.||++|++|+
T Consensus 708 g~pgrpgrpg~nglkg~kg~pg~ 730 (1167)
T KOG3546|consen 708 GFPGRPGRPGMNGLKGEKGEPGF 730 (1167)
T ss_pred CCCCCCCCCCccccccccCCCCc
Confidence 77777777778888887777764
No 5
>smart00111 C4 C-terminal tandem repeated domain in type 4 procollagens. Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
Probab=100.00 E-value=3.8e-44 Score=369.10 Aligned_cols=112 Identities=56% Similarity=1.103 Sum_probs=108.9
Q ss_pred chhhcccCCccCCCCCCCCccccccceeeEeecCCCCCCCCCCCCCCCCcCCCCCcccEEecCCCcccccC-CCCceeee
Q psy17790 2329 RAIAIHSQSVTIPSCPGGWEELWVGFSFLMHTDAGSGGGGQSLISPGSCLQDFRPTPFIQCHGVGSCNYYS-TASSFWLA 2407 (2564)
Q Consensus 2329 ~~~~~hsq~~~~p~cp~gw~~lw~Gysf~~~t~~g~~~~gq~l~s~gscl~~f~~~pfi~c~g~g~c~~~~-~~~s~wl~ 2407 (2564)
.+||||||+.+||+||.+|++||+||||+|||+ ++++++|+|+||||||++||+|||||||++++||||+ |.+||||+
T Consensus 2 ~~~a~HSQt~~iP~CP~g~~~LW~GyS~l~~tg-~~~g~gQdL~spGSCL~~F~~~Pfi~C~~~~~C~y~~rn~~SfWLs 80 (114)
T smart00111 2 FVIAVHSQTTNVPQCPAGWVELWTGYSFLMHTG-NGEGHGQDLGSPGSCLERFRTMPFIECNGRGVCNYASRNDYSFWLS 80 (114)
T ss_pred ceEEEecCCCCCCCCCCCCcccccceeEEEecC-CCCccCCCCCCCccchhhhccCCeEEECCCCeecccccCCcceEEe
Confidence 579999999999999999999999999999998 9999999999999999999999999999999999999 77799999
Q ss_pred cCcCccccCCCccccccccCCCCceeeeEeeccc
Q psy17790 2408 TLDDRDQWRKPRPQTLKANDLKTRISRCAVCLRR 2441 (2564)
Q Consensus 2408 ~~~~~~~~~~p~~~~~~~~~~~~~isrc~vc~~~ 2441 (2564)
|+++++||++|+++++++++|++|||||+||||+
T Consensus 81 t~~~~~~f~~p~~~~~~~~~~~~~ISRC~VC~~~ 114 (114)
T smart00111 81 TIEPSDQFTAPRPMTPKAGDLRPYISRCQVCEKP 114 (114)
T ss_pred ccCccccccccccccccchhhhhhccccceeecc
Confidence 9999999999999999999999999999999984
No 6
>KOG3546|consensus
Probab=100.00 E-value=2.7e-38 Score=380.73 Aligned_cols=127 Identities=45% Similarity=0.792 Sum_probs=61.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCC----------CCCC
Q psy17790 1636 GSMGALGEVGPKGFQGEPGPKGYAGLAGLPGLNGTHGWPGEPGP--RGPPGVKGEPGMDGDPGLSG----------NPGI 1703 (2564)
Q Consensus 1636 G~~G~~G~pG~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~--~G~~G~~G~~G~~G~~G~~G----------~~G~ 1703 (2564)
+.++..|.+|+-|.+|.+|+-|.+|.+|.+|++|.+|.+|++|. +|.+|.+|.+|.+|.+|.+= .+|.
T Consensus 687 gepg~~g~pgp~g~pg~kge~g~pgrpgrpg~nglkg~kg~pg~~m~g~pg~pgppgppgppg~pv~~~~~~~~s~~pg~ 766 (1167)
T KOG3546|consen 687 GEPGFRGPPGPYGRPGYKGEIGFPGRPGRPGMNGLKGEKGEPGFGMRGMPGPPGPPGPPGPPGTPVYDSNVFAESSRPGP 766 (1167)
T ss_pred CCCCCCCCCCCCCCCCcccccCCCCCCCCCCccccccccCCCCccccCCCCCCCCCCCCCCCCCcccccccccccCCCCC
Confidence 44444555555555555555566666666667777777777663 34444444444444444321 1333
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCccc---ccccCCCCCCCCCCCCCCCCCCCCCCCC
Q psy17790 1704 PGDRGPRGGPGLSGAPGPKGEPGDIGLPENI---IAATKGDFGEPGMTGLTGEKGWRGDVGW 1762 (2564)
Q Consensus 1704 ~G~~G~~G~~G~~G~~G~~G~~G~~G~~g~~---~~g~~G~~G~~G~~G~~G~~G~~G~~G~ 1762 (2564)
+|++|..|.+|.+|++|..|.+|.+|++--. .+-.++.+|+.|..|++|++|++|.-++
T Consensus 767 pg~~g~~g~pg~kg~kg~~g~~gppg~p~d~~~l~~~~~~~kg~~gd~g~kge~ge~g~g~f 828 (1167)
T KOG3546|consen 767 PGLPGNQGPPGPKGAKGEVGPPGPPGFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPGGGGF 828 (1167)
T ss_pred CCCCCCCCCCCCccccCCcCCCCCCCCCchHHHHHHHhccccccccccccccccCCCCCCce
Confidence 3333333333333333333333333333211 2234555555555555555555554444
No 7
>KOG3544|consensus
Probab=99.44 E-value=1.2e-11 Score=154.67 Aligned_cols=79 Identities=46% Similarity=0.921 Sum_probs=49.6
Q ss_pred CCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCC--------CCCCCCCCC---CCCCCCCCCcccc
Q psy17790 34 GIPGQG--KPIRGPPGEPGSPGFPGLEGDVGFP---GLPGRPGLKGP--------KGNDCGFCP---PGRPGVKGEAGEA 97 (2564)
Q Consensus 34 ~~~~~~--~~~~G~~G~~G~~G~~G~~G~~G~~---G~~G~~G~~g~--------~g~~~~~cp---~G~~G~~G~~G~~ 97 (2564)
+|+|.. +..++++|++|++|.+|.+|.+|.+ |.+|.+|.+.. ....|+.|| +|++|++|.+|.+
T Consensus 99 ~~~~~~~~~~~~cp~GppGp~G~pG~~G~pG~~g~~G~~G~pG~~~~~~~~~~~~~~~~c~~cP~~~~Gp~G~~G~~G~~ 178 (327)
T KOG3544|consen 99 GCQGPPGEQGEKCPPGPPGPPGPPGPPGPPGVPGAPGLPGEPGAPGQLGETGTPLGPPGCIPCPPGPAGPPGPPGPKGPP 178 (327)
T ss_pred CCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCcccCCCCCCCCCCCCCCCCCCC
Confidence 799998 7777777777777777776666666 44444442211 123588998 7777666666666
Q ss_pred ccCCCCCCCCCCCCC
Q psy17790 98 AINGIPGDPGAPGRM 112 (2564)
Q Consensus 98 G~~G~~G~pG~~G~~ 112 (2564)
|..|.+|.+|.+|.+
T Consensus 179 G~~G~~G~~G~~G~~ 193 (327)
T KOG3544|consen 179 GPPGPPGQPGPPGPP 193 (327)
T ss_pred CCCCCCCCCCCCCCC
Confidence 555555444444444
No 8
>PF08744 NOZZLE: Plant transcription factor NOZZLE; InterPro: IPR014855 NOZZLE is a transcription factor that plays a role in patterning the proximal-distal and adaxial-abaxial axes [, ].
Probab=48.12 E-value=17 Score=43.51 Aligned_cols=21 Identities=29% Similarity=0.589 Sum_probs=15.9
Q ss_pred CCceeeeEeecccCCCCCccc
Q psy17790 2429 KTRISRCAVCLRRKSEPGRLV 2449 (2564)
Q Consensus 2429 ~~~isrc~vc~~~~~~~~~~~ 2449 (2564)
...-+||-||.|.+-.-.-++
T Consensus 166 ~~~~~RCD~CFKkkrl~~d~~ 186 (314)
T PF08744_consen 166 ASSNSRCDTCFKKKRLDGDQN 186 (314)
T ss_pred cccccchhhhhhhhcccCccc
Confidence 356799999999876666554
No 9
>PF13945 NST1: Salt tolerance down-regulator
Probab=34.44 E-value=4.5 Score=47.58 Aligned_cols=41 Identities=24% Similarity=0.434 Sum_probs=27.4
Q ss_pred CCcceeeccccCcccccCCCCcc-------ccCcccccccccccccch
Q psy17790 2290 GDNSYWLSSTEPMLKTMEPIPSA-------DLKKYVSRCSVCESTTRA 2330 (2564)
Q Consensus 2290 ~~~syWLst~~~~~~~~~p~~~~-------~~~~~iSRC~VC~~~~~~ 2330 (2564)
+.++||||..++--..+.-|.+. +.+.|.-.|+||=+...+
T Consensus 106 ~LkeFW~SL~eeERr~LVkIEKe~VLkkmKeqq~h~C~C~vCgr~~~~ 153 (190)
T PF13945_consen 106 KLKEFWESLSEEERRSLVKIEKEAVLKKMKEQQKHSCSCSVCGRKRTA 153 (190)
T ss_pred HHHHHHHccCHHHHHHHHHhhHHHHHHHHHHHhccCcccHHHhchhhH
Confidence 47899999998633223334333 235678899999987633
No 10
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=24.94 E-value=81 Score=41.92 Aligned_cols=66 Identities=17% Similarity=0.308 Sum_probs=44.1
Q ss_pred eecCCccccCCCCCCCCCCCCCCCCceEeccCCCCcccCCCCCcceeeccc--cCcccccCCCCccccCccccccccccc
Q psy17790 2249 ISGDNKAHTQDLGSPGSCLPRFSTMPFLFCSLTQTCDYASRGDNSYWLSST--EPMLKTMEPIPSADLKKYVSRCSVCES 2326 (2564)
Q Consensus 2249 ~~~~~~~~~QdLgs~GSCL~~f~t~pf~~C~~~~~C~y~~~~~~syWLst~--~~~~~~~~p~~~~~~~~~iSRC~VC~~ 2326 (2564)
|.+.+....=||.+- .|.+|=||| +..|++ +|..++|.+.+ +..+||.-||.+-...-||| ||-
T Consensus 44 I~tr~n~d~I~v~~l-----~~q~~~yiE---dE~~~~--~~i~a~w~snn~~~A~p~f~~Pvp~G~~sV~is----ceG 109 (465)
T PF01690_consen 44 ISTRENDDSISVRSL-----NSQRMRYIE---DENWNW--VNIDAGWYSNNSVKAIPMFVFPVPKGKWSVEIS----CEG 109 (465)
T ss_pred eeccccccceEeecc-----CceeEEEEe---ccccee--EEecceeEecCcceeeeEEEEecCCceEEEEEE----ecc
Confidence 444444444444443 355667888 666665 45788888877 45788888999988877887 775
Q ss_pred cc
Q psy17790 2327 TT 2328 (2564)
Q Consensus 2327 ~~ 2328 (2564)
-.
T Consensus 110 ~q 111 (465)
T PF01690_consen 110 YQ 111 (465)
T ss_pred ee
Confidence 44
No 11
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=23.42 E-value=1.9e+02 Score=35.90 Aligned_cols=35 Identities=26% Similarity=0.606 Sum_probs=24.8
Q ss_pred CCCceEeccCCCCcccCCCCCcceeeccccCcccccCCCCccccCccccccccccccc
Q psy17790 2271 STMPFLFCSLTQTCDYASRGDNSYWLSSTEPMLKTMEPIPSADLKKYVSRCSVCESTT 2328 (2564)
Q Consensus 2271 ~t~pf~~C~~~~~C~y~~~~~~syWLst~~~~~~~~~p~~~~~~~~~iSRC~VC~~~~ 2328 (2564)
.++|+|.|. ||++.-+ .+...++||.+|.+|.--+
T Consensus 61 ~~~p~v~Cr---VCq~~I~--------------------i~gk~~QhVVkC~~CnEAT 95 (256)
T PF09788_consen 61 GGAPVVTCR---VCQSLID--------------------IEGKMHQHVVKCSVCNEAT 95 (256)
T ss_pred CCCceEEee---cCCceec--------------------ccCccceeeEECCCCCccc
Confidence 478999998 7876322 1224678999999997544
No 12
>KOG2242|consensus
Probab=21.74 E-value=1.6e+02 Score=40.58 Aligned_cols=72 Identities=13% Similarity=0.069 Sum_probs=39.2
Q ss_pred cCCCCCCCCCCCCCCCCceE---eccCCCCcccCCCCCcceeeccccCcc--cccCCCCccccCccccccccccccc
Q psy17790 2257 TQDLGSPGSCLPRFSTMPFL---FCSLTQTCDYASRGDNSYWLSSTEPML--KTMEPIPSADLKKYVSRCSVCESTT 2328 (2564)
Q Consensus 2257 ~QdLgs~GSCL~~f~t~pf~---~C~~~~~C~y~~~~~~syWLst~~~~~--~~~~p~~~~~~~~~iSRC~VC~~~~ 2328 (2564)
.=++-+.++|+..|...=|+ -=-...+||.++-+.+--|.-+..-+. ...++...+--..++.||.||-..-
T Consensus 304 ~~~~~~~~~~~~~~~~~i~~~~~r~~~~d~~~~s~~~~~r~~~~~~~~~~~~p~~~~~~~d~~s~~~v~~~~~~~d~ 380 (558)
T KOG2242|consen 304 GYLIQQAGQCLNKLPRDIFLRKKRNYILDQTNLSSSAQRRKMGLFSQFSRKAPVVCPAFEDLKSRTIVRTEVEGKDV 380 (558)
T ss_pred cchhhccccccccchhhhhhhhhhhhhhhccccchhhceecccccccccccCCCcCCchhhhccccceEeeeecccC
Confidence 34577899999998763222 222245666655544444544443322 1222333333456677888887755
Done!