Query psy17790
Match_columns 2564
No_of_seqs 1105 out of 5420
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 23:11:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17790.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17790hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1y0f_A Collagen I alpha 1; nat 100.0 3.7E-87 1.3E-91 909.9 110.1 13 2198-2210 1018-1030(1054)
2 1y0f_A Collagen I alpha 1; nat 100.0 8.4E-87 2.9E-91 906.5 111.7 27 938-964 18-44 (1054)
3 1t60_A Type IV collagen; basem 100.0 4.2E-95 1.4E-99 814.4 12.2 226 2216-2441 3-228 (229)
4 3hqv_A Collagen alpha-1(I) cha 100.0 1.2E-85 4E-90 909.4 108.1 13 2216-2228 1031-1043(1056)
5 1t60_C Type IV collagen; basem 100.0 2E-94 6.9E-99 809.7 11.7 225 2215-2441 1-226 (227)
6 1y0f_B Collagen I alpha 2; nat 100.0 1.9E-84 6.5E-89 884.7 108.5 23 942-964 18-40 (1026)
7 1y0f_B Collagen I alpha 2; nat 100.0 2.1E-84 7.2E-89 884.3 108.1 14 2196-2209 1006-1019(1026)
8 1t60_A Type IV collagen; basem 100.0 1.3E-50 4.5E-55 455.0 5.2 184 2064-2327 8-228 (229)
9 1t60_C Type IV collagen; basem 100.0 2.9E-49 1E-53 444.6 4.0 182 2064-2327 7-226 (227)
10 4gyx_A Type III collagen fragm 88.1 0.51 1.8E-05 36.4 3.9 21 49-69 3-23 (31)
11 3gxe_F Collagen alpha-1(I) cha 83.8 0.64 2.2E-05 35.4 2.6 15 1999-2013 5-19 (23)
12 1pwb_A SP-D, PSP-D, pulmonary 40.6 7.6 0.00026 43.2 0.9 8 2238-2245 111-118 (177)
13 8tfv_A Protein (thanatin); bac 31.0 17 0.00058 26.2 1.0 16 2381-2396 3-19 (21)
14 2ko5_A Ring finger protein Z; 29.2 29 0.00099 35.2 2.8 47 2375-2449 32-78 (99)
No 1
>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} PDB: 1ygv_A 3hqv_A 3hr2_A
Probab=100.00 E-value=3.7e-87 Score=909.90 Aligned_cols=13 Identities=62% Similarity=1.370 Sum_probs=4.8
Q ss_pred CCCCCCCCCCCCC
Q psy17790 2198 QGIPGAPGLPAPP 2210 (2564)
Q Consensus 2198 ~G~~G~~G~~g~~ 2210 (2564)
++.+++++.++++
T Consensus 1018 ~G~pGppGppGpp 1030 (1054)
T 1y0f_A 1018 PGPPGPPGPPGPP 1030 (1054)
T ss_pred CCCCCCCCCCCCC
Confidence 3333333333333
No 2
>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} PDB: 1ygv_A 3hqv_A 3hr2_A
Probab=100.00 E-value=8.4e-87 Score=906.46 Aligned_cols=27 Identities=41% Similarity=0.753 Sum_probs=10.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy17790 938 LQGPYGAPGDEGRDGLPGRNGVPGSKG 964 (2564)
Q Consensus 938 ~~G~~G~pG~~G~~G~pG~~G~~G~~G 964 (2564)
..++++++|.+|.+|.+|.+|++|.++
T Consensus 18 ~~g~~G~~G~pG~~G~pG~~G~~G~~G 44 (1054)
T 1y0f_A 18 PMGPSGPRGLPGPPGAPGPQGFQGPPG 44 (1054)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 333344444444444444443333333
No 3
>1t60_A Type IV collagen; basement membrane, NC1 domain, structural protein; 1.50A {Bos taurus} SCOP: d.169.1.6 d.169.1.6 PDB: 1m3d_A 1t61_A 1li1_A
Probab=100.00 E-value=4.2e-95 Score=814.43 Aligned_cols=226 Identities=55% Similarity=1.168 Sum_probs=221.4
Q ss_pred CCcceEEEecCCCCCCCCCCCCCCCcccccceeeecCCccccCCCCCCCCCCCCCCCCceEeccCCCCcccCCCCCccee
Q psy17790 2216 SRGFFLTFHSQTDMEPECPRYTSKLWSGYSLLHISGDNKAHTQDLGSPGSCLPRFSTMPFLFCSLTQTCDYASRGDNSYW 2295 (2564)
Q Consensus 2216 ~~g~~~~~HSQs~~iP~CP~g~~~lw~GyS~l~~~~~~~~~~QdLgs~GSCL~~f~t~pf~~C~~~~~C~y~~~~~~syW 2295 (2564)
.++|||||||||++||+||.+|++||+||||||+++|+++|+|||+++||||+|||||||||||.|+|||||+|||||||
T Consensus 3 ~~g~l~trHSQt~~iP~CP~g~~~Lw~GYSll~~~g~~~~~gQDLG~~gSCl~rFstmPf~~C~~~~vC~~a~rnd~SyW 82 (229)
T 1t60_A 3 DHGFLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYW 82 (229)
T ss_dssp --CEEEEEECSSSSCCCCCTTCEEEEEEEEEEEEEETTEEEECCTTSGGGEESSCCSCCEEEECTTSCEEESCSCCEEEE
T ss_pred cceEEEEEecCCCCCCCCCCCCCccccceeeEEeecCCcccCcccCCCcchhccccCCCceEeCCCCeecccccCCccee
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCcccccCCCCccccCcccccccccccccchhhcccCCccCCCCCCCCccccccceeeEeecCCCCCCCCCCCCCC
Q psy17790 2296 LSSTEPMLKTMEPIPSADLKKYVSRCSVCESTTRAIAIHSQSVTIPSCPGGWEELWVGFSFLMHTDAGSGGGGQSLISPG 2375 (2564)
Q Consensus 2296 Lst~~~~~~~~~p~~~~~~~~~iSRC~VC~~~~~~~~~hsq~~~~p~cp~gw~~lw~Gysf~~~t~~g~~~~gq~l~s~g 2375 (2564)
|||+++++|+|+||...+|++|||||+|||+++++||||||+++||+||.+|++||+||||+|||++++++|+|+|+|||
T Consensus 83 Lst~~~~p~~~~pv~~~~i~~yISRC~VCe~~~~~ia~HSQt~~IP~CP~Gw~~LW~GYSflm~t~~g~~g~gQdLgspG 162 (229)
T 1t60_A 83 LSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPG 162 (229)
T ss_dssp EBCSCCCCTTCCCBCGGGGGGGBCEEEEEEESSCEEEEECSSSSCCCCCTTCEEEEEEEEEEEEECGGGCEEECCTTSGG
T ss_pred ecCCCCCCcccCCCCHHHhHhhhcccceeecccccEEEecCCCCCCCCCCCChhhccceeEEEEeccCCccccccccCCc
Confidence 99999999988999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCCCcccEEecCCCcccccCCCCceeeecCcCccccCCCccccccccCCCCceeeeEeeccc
Q psy17790 2376 SCLQDFRPTPFIQCHGVGSCNYYSTASSFWLATLDDRDQWRKPRPQTLKANDLKTRISRCAVCLRR 2441 (2564)
Q Consensus 2376 scl~~f~~~pfi~c~g~g~c~~~~~~~s~wl~~~~~~~~~~~p~~~~~~~~~~~~~isrc~vc~~~ 2441 (2564)
||||+||++||||||++++||||+|.|||||+|+++.+||++|+++|||+.+|++|||||+||||+
T Consensus 163 SCL~~Frt~PFi~C~~~~~C~y~~n~~SfWLst~~~~~~~~~P~~~~~~~~~i~~~ISRC~VC~~~ 228 (229)
T 1t60_A 163 SCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMRR 228 (229)
T ss_dssp GEESSCCSSCEEEEETTSCEECCTTCEEEEEBCCCGGGTTSCCCCEEECTTSSGGGBCEEEEEEC-
T ss_pred ccccccccCCeEEeCCCCcEeECCCCcceeeccCCccccccCcccccccccchhhhcccceeeecc
Confidence 999999999999999999999999999999999999999999999999999999999999999986
No 4
>3hqv_A Collagen alpha-1(I) chain; native, in SITU, molecular envelope, triple-helical, supermolecular, supramolecular, packing structure; 5.16A {Rattus norvegicus} PDB: 3hr2_A
Probab=100.00 E-value=1.2e-85 Score=909.37 Aligned_cols=13 Identities=31% Similarity=0.501 Sum_probs=9.3
Q ss_pred CCcceEEEecCCC
Q psy17790 2216 SRGFFLTFHSQTD 2228 (2564)
Q Consensus 2216 ~~g~~~~~HSQs~ 2228 (2564)
+.+|.|.|.+|-.
T Consensus 1031 ~~~~~~~~~~~~~ 1043 (1056)
T 3hqv_A 1031 SGGYDFSFLPQPP 1043 (1056)
T ss_pred ccccccccccCCh
Confidence 4578888887754
No 5
>1t60_C Type IV collagen; basement membrane, NC1 domain, structural protein; 1.50A {Bos taurus} PDB: 1m3d_C 1t61_C 1li1_C
Probab=100.00 E-value=2e-94 Score=809.70 Aligned_cols=225 Identities=59% Similarity=1.138 Sum_probs=219.3
Q ss_pred CCCcceEEEecCCCCCCCCCCCCCCCcccccceeeecCCccccCCCCCCCCCCCCCCCCceEeccCCCCcccCCCCCcce
Q psy17790 2215 PSRGFFLTFHSQTDMEPECPRYTSKLWSGYSLLHISGDNKAHTQDLGSPGSCLPRFSTMPFLFCSLTQTCDYASRGDNSY 2294 (2564)
Q Consensus 2215 ~~~g~~~~~HSQs~~iP~CP~g~~~lw~GyS~l~~~~~~~~~~QdLgs~GSCL~~f~t~pf~~C~~~~~C~y~~~~~~sy 2294 (2564)
++++|||||||||++||+||.+|++||+||||||+++++++|+|||++|||||++||||||||||.|++||||+||||||
T Consensus 1 ~~~g~~~~~HSQt~~iP~CP~g~~~LW~GySll~~~g~~~~~gQdLgs~GSCL~~Fst~Pf~~C~~~~~C~yasrnd~Sy 80 (227)
T 1t60_C 1 ISIGYLLVKHSQTDQEPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPGDVCYYASRNDKSY 80 (227)
T ss_dssp --CCEEEEEECSSSSCCCCCTTCEEEEEEEEEEEEEETTEEEECCTTSGGGEESSCCSCCEEEEETTTEEEESCSSCEEE
T ss_pred CcceEEEEEecCCCCCCCCCCCchhhhcceeeeeeccCCcccCCcCCCCcchhhhhcCCCceEeCCCCeecccccCCcce
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCcccccCCCCccccCcccccccccccccchhhcccCCccCCCCCCCCccccccceeeEeecCCCCCCCCCCCCC
Q psy17790 2295 WLSSTEPMLKTMEPIPSADLKKYVSRCSVCESTTRAIAIHSQSVTIPSCPGGWEELWVGFSFLMHTDAGSGGGGQSLISP 2374 (2564)
Q Consensus 2295 WLst~~~~~~~~~p~~~~~~~~~iSRC~VC~~~~~~~~~hsq~~~~p~cp~gw~~lw~Gysf~~~t~~g~~~~gq~l~s~ 2374 (2564)
||||+++++ |+||.+.+|++|||||+|||+++++|||||||++||+||.+|++||+||||+|||++++++|+|+|+||
T Consensus 81 WLst~~~~p--~~p~~~~~i~~~ISRC~VCe~~~~~ia~HSQt~~iP~CP~Gw~~LW~GYSflm~t~~g~~g~gQdL~sp 158 (227)
T 1t60_C 81 WLSTTAPLP--MMPVAEEDIRPYISRCSVCEAPAVAIAVHSQDVSIPHCPAGWRSLWIGYSFLMHTAAGDEGGGQSLVSP 158 (227)
T ss_dssp EEBCSCCCC--SSCEEGGGTGGGBCEEEEEEESSCEEEEECSSSSCCCCCTTCEEEEEEEEEEEEECSTTCEEECCTTSG
T ss_pred eccCCCCCc--cCCCchhHhhhhccccceecccCCceEEecCCCCCCCCCCCChhhcceeeEEEEcccCCccccccCCCC
Confidence 999999998 669999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCCCCCcccEEecC-CCcccccCCCCceeeecCcCccccCCCccccccccCCCCceeeeEeeccc
Q psy17790 2375 GSCLQDFRPTPFIQCHG-VGSCNYYSTASSFWLATLDDRDQWRKPRPQTLKANDLKTRISRCAVCLRR 2441 (2564)
Q Consensus 2375 gscl~~f~~~pfi~c~g-~g~c~~~~~~~s~wl~~~~~~~~~~~p~~~~~~~~~~~~~isrc~vc~~~ 2441 (2564)
|||||+||++||||||+ +++||||+|.|||||+|+++.+||++|+++|||+.+|++|||||+||||+
T Consensus 159 GSCL~~Frt~PFi~C~~~~g~C~y~~n~~SfWLst~~~~~~~~~P~~~~~~~~~i~~~ISRC~VC~~~ 226 (227)
T 1t60_C 159 GSCLEDFRATPFIECNGARGTCHYYANKYSFWLTTIPEQSFQGTPSADTLKAGLIRTHISRCQVCMKN 226 (227)
T ss_dssp GGEESSCCSSCEEEEETTTTEEECCTTCEEEEEBCCSSSSEESSCCCEEECTTTGGGGBCEEEEEEC-
T ss_pred cccccccccCCeEEecCCCCeeeecCCCCceeeeccCccccccCCcccccchhhhhhhcccceeeecc
Confidence 99999999999999998 99999999999999999999999999999999999999999999999986
No 6
>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} PDB: 1ygv_B 3hqv_B 3hr2_B
Probab=100.00 E-value=1.9e-84 Score=884.72 Aligned_cols=23 Identities=43% Similarity=0.839 Sum_probs=8.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC
Q psy17790 942 YGAPGDEGRDGLPGRNGVPGSKG 964 (2564)
Q Consensus 942 ~G~pG~~G~~G~pG~~G~~G~~G 964 (2564)
+|++|.+|.+|.+|.+|.+|+++
T Consensus 18 ~G~~G~~G~~G~~G~~G~~G~~G 40 (1026)
T 1y0f_B 18 RGPPGASGAPGPQGFQGPPGEPG 40 (1026)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCC
Confidence 33333333333333333333333
No 7
>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} PDB: 1ygv_B 3hqv_B 3hr2_B
Probab=100.00 E-value=2.1e-84 Score=884.30 Aligned_cols=14 Identities=57% Similarity=1.158 Sum_probs=5.2
Q ss_pred CCCCCCCCCCCCCC
Q psy17790 2196 GFQGIPGAPGLPAP 2209 (2564)
Q Consensus 2196 G~~G~~G~~G~~g~ 2209 (2564)
+.++++++++.+++
T Consensus 1006 G~~G~pGppGpPGp 1019 (1026)
T 1y0f_B 1006 GPPGPPGPPGPPGP 1019 (1026)
T ss_pred CCCCCCCCCCCCCC
Confidence 33333333333333
No 8
>1t60_A Type IV collagen; basement membrane, NC1 domain, structural protein; 1.50A {Bos taurus} SCOP: d.169.1.6 d.169.1.6 PDB: 1m3d_A 1t61_A 1li1_A
Probab=100.00 E-value=1.3e-50 Score=455.05 Aligned_cols=184 Identities=28% Similarity=0.499 Sum_probs=159.1
Q ss_pred HHhhhcccccccccccccc-------------------------cccccccccccCcCCCCCCCCCCCCCCCCCCCCCCC
Q psy17790 2064 IVKESLSNAVISTKIVKKL-------------------------SALPQINHALFGIAGTNGAKGETGPPGDTGVEGYPG 2118 (2564)
Q Consensus 2064 ~~~~s~~~~~p~~ki~k~~-------------------------S~lp~~~~~~~g~~g~~G~~G~~G~pG~~G~~G~~G 2118 (2564)
|++|||++.||.|+..... |||++|++|+|.+|..+
T Consensus 8 ~trHSQt~~iP~CP~g~~~Lw~GYSll~~~g~~~~~gQDLG~~gSCl~rFstmPf~~C~~~------------------- 68 (229)
T 1t60_A 8 VTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNIN------------------- 68 (229)
T ss_dssp EEEECSSSSCCCCCTTCEEEEEEEEEEEEEETTEEEECCTTSGGGEESSCCSCCEEEECTT-------------------
T ss_pred EEEecCCCCCCCCCCCCCccccceeeEEeecCCcccCcccCCCcchhccccCCCceEeCCC-------------------
Confidence 8999999999999987544 89999999999999866
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCC
Q psy17790 2119 TPGAKGDRGFIGDTGLPGMDGTPGEKGFQGEPGDTLAYNLQWTRGRAGEIGPRGDTLAYNLQWTRGRAGEIGPRGPVGFQ 2198 (2564)
Q Consensus 2119 ~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~~~~~~~g~~G~~G~~G~~g~~~~~~~~~~~g~~G~~G~~G~~G~~ 2198 (2564)
..|.|++| |+.+|||++.+.++..+ -+
T Consensus 69 ---------------------------------~vC~~a~r-------------nd~SyWLst~~~~p~~~---~p---- 95 (229)
T 1t60_A 69 ---------------------------------NVCNFASR-------------NDYSYWLSTPEPMPMSM---AP---- 95 (229)
T ss_dssp ---------------------------------SCEEESCS-------------CCEEEEEBCSCCCCTTC---CC----
T ss_pred ---------------------------------Ceeccccc-------------CCcceeecCCCCCCccc---CC----
Confidence 67999999 88899999977655210 01
Q ss_pred CCCCCCCCCCCCCCCCCCC-------cceEEEecCCCCCCCCCCCCCCCcccccceeeec-CCccccCCCCCCCCCCCCC
Q psy17790 2199 GIPGAPGLPAPPPPPPPSR-------GFFLTFHSQTDMEPECPRYTSKLWSGYSLLHISG-DNKAHTQDLGSPGSCLPRF 2270 (2564)
Q Consensus 2199 G~~G~~G~~g~~~~~~~~~-------g~~~~~HSQs~~iP~CP~g~~~lw~GyS~l~~~~-~~~~~~QdLgs~GSCL~~f 2270 (2564)
..+..=.++||| ++||||||||++||+||.+|++||+||||||+++ ++++|+|||+||||||++|
T Consensus 96 -------v~~~~i~~yISRC~VCe~~~~~ia~HSQt~~IP~CP~Gw~~LW~GYSflm~t~~g~~g~gQdLgspGSCL~~F 168 (229)
T 1t60_A 96 -------ITGENIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEF 168 (229)
T ss_dssp -------BCGGGGGGGBCEEEEEEESSCEEEEECSSSSCCCCCTTCEEEEEEEEEEEEECGGGCEEECCTTSGGGEESSC
T ss_pred -------CCHHHhHhhhcccceeecccccEEEecCCCCCCCCCCCChhhccceeEEEEeccCCccccccccCCccccccc
Confidence 111122357888 8999999999999999999999999999996665 4999999999999999999
Q ss_pred CCCceEeccCCCCcccCCCCCcceeeccccCcccccCC----CCccccCcccccccccccc
Q psy17790 2271 STMPFLFCSLTQTCDYASRGDNSYWLSSTEPMLKTMEP----IPSADLKKYVSRCSVCEST 2327 (2564)
Q Consensus 2271 ~t~pf~~C~~~~~C~y~~~~~~syWLst~~~~~~~~~p----~~~~~~~~~iSRC~VC~~~ 2327 (2564)
|||||||||.+++||||+ |||||||||+++++|||+| |...+|++|||||+|||+.
T Consensus 169 rt~PFi~C~~~~~C~y~~-n~~SfWLst~~~~~~~~~P~~~~~~~~~i~~~ISRC~VC~~~ 228 (229)
T 1t60_A 169 RSAPFIECHGRGTCNYYA-NAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMRR 228 (229)
T ss_dssp CSSCEEEEETTSCEECCT-TCEEEEEBCCCGGGTTSCCCCEEECTTSSGGGBCEEEEEEC-
T ss_pred ccCCeEEeCCCCcEeECC-CCcceeeccCCccccccCcccccccccchhhhcccceeeecc
Confidence 999999999999999998 7999999999999998754 6666999999999999986
No 9
>1t60_C Type IV collagen; basement membrane, NC1 domain, structural protein; 1.50A {Bos taurus} PDB: 1m3d_C 1t61_C 1li1_C
Probab=100.00 E-value=2.9e-49 Score=444.59 Aligned_cols=182 Identities=29% Similarity=0.455 Sum_probs=157.4
Q ss_pred HHhhhcccccccccccccc-------------------------cccccccccccCcCCCCCCCCCCCCCCCCCCCCCCC
Q psy17790 2064 IVKESLSNAVISTKIVKKL-------------------------SALPQINHALFGIAGTNGAKGETGPPGDTGVEGYPG 2118 (2564)
Q Consensus 2064 ~~~~s~~~~~p~~ki~k~~-------------------------S~lp~~~~~~~g~~g~~G~~G~~G~pG~~G~~G~~G 2118 (2564)
|++|||++.||.|+..... |||+.|++|+|.+|..+
T Consensus 7 ~~~HSQt~~iP~CP~g~~~LW~GySll~~~g~~~~~gQdLgs~GSCL~~Fst~Pf~~C~~~------------------- 67 (227)
T 1t60_C 7 LVKHSQTDQEPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPG------------------- 67 (227)
T ss_dssp EEEECSSSSCCCCCTTCEEEEEEEEEEEEEETTEEEECCTTSGGGEESSCCSCCEEEEETT-------------------
T ss_pred EEEecCCCCCCCCCCCchhhhcceeeeeeccCCcccCCcCCCCcchhhhhcCCCceEeCCC-------------------
Confidence 8999999999999987443 89999999999999754
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCC
Q psy17790 2119 TPGAKGDRGFIGDTGLPGMDGTPGEKGFQGEPGDTLAYNLQWTRGRAGEIGPRGDTLAYNLQWTRGRAGEIGPRGPVGFQ 2198 (2564)
Q Consensus 2119 ~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~~~~~~~g~~G~~G~~G~~g~~~~~~~~~~~g~~G~~G~~G~~G~~ 2198 (2564)
..|.|.++ |+.+|||++...++.. ++
T Consensus 68 ---------------------------------~~C~yasr-------------nd~SyWLst~~~~p~~-----p~--- 93 (227)
T 1t60_C 68 ---------------------------------DVCYYASR-------------NDKSYWLSTTAPLPMM-----PV--- 93 (227)
T ss_dssp ---------------------------------TEEEESCS-------------SCEEEEEBCSCCCCSS-----CE---
T ss_pred ---------------------------------Ceeccccc-------------CCcceeccCCCCCccC-----CC---
Confidence 67999988 7889999997766532 11
Q ss_pred CCCCCCCCCCCCCCCCCCC-------cceEEEecCCCCCCCCCCCCCCCcccccceeee-cCCccccCCCCCCCCCCCCC
Q psy17790 2199 GIPGAPGLPAPPPPPPPSR-------GFFLTFHSQTDMEPECPRYTSKLWSGYSLLHIS-GDNKAHTQDLGSPGSCLPRF 2270 (2564)
Q Consensus 2199 G~~G~~G~~g~~~~~~~~~-------g~~~~~HSQs~~iP~CP~g~~~lw~GyS~l~~~-~~~~~~~QdLgs~GSCL~~f 2270 (2564)
+...=.++||| .+||||||||++||+||.+|++||+||||||++ +++++|+|||+||||||++|
T Consensus 94 --------~~~~i~~~ISRC~VCe~~~~~ia~HSQt~~iP~CP~Gw~~LW~GYSflm~t~~g~~g~gQdL~spGSCL~~F 165 (227)
T 1t60_C 94 --------AEEDIRPYISRCSVCEAPAVAIAVHSQDVSIPHCPAGWRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDF 165 (227)
T ss_dssp --------EGGGTGGGBCEEEEEEESSCEEEEECSSSSCCCCCTTCEEEEEEEEEEEEECSTTCEEECCTTSGGGEESSC
T ss_pred --------chhHhhhhccccceecccCCceEEecCCCCCCCCCCCChhhcceeeEEEEcccCCccccccCCCCccccccc
Confidence 11111257888 899999999999999999999999999999555 56999999999999999999
Q ss_pred CCCceEeccC-CCCcccCCCCCcceeeccccCcccccCC----CCccccCcccccccccccc
Q psy17790 2271 STMPFLFCSL-TQTCDYASRGDNSYWLSSTEPMLKTMEP----IPSADLKKYVSRCSVCEST 2327 (2564)
Q Consensus 2271 ~t~pf~~C~~-~~~C~y~~~~~~syWLst~~~~~~~~~p----~~~~~~~~~iSRC~VC~~~ 2327 (2564)
|||||||||. +++||||+ |||||||||+++++|||+| |...+|++|||||+|||+.
T Consensus 166 rt~PFi~C~~~~g~C~y~~-n~~SfWLst~~~~~~~~~P~~~~~~~~~i~~~ISRC~VC~~~ 226 (227)
T 1t60_C 166 RATPFIECNGARGTCHYYA-NKYSFWLTTIPEQSFQGTPSADTLKAGLIRTHISRCQVCMKN 226 (227)
T ss_dssp CSSCEEEEETTTTEEECCT-TCEEEEEBCCSSSSEESSCCCEEECTTTGGGGBCEEEEEEC-
T ss_pred ccCCeEEecCCCCeeeecC-CCCceeeeccCccccccCCcccccchhhhhhhcccceeeecc
Confidence 9999999997 99999999 8999999999999988765 5666999999999999986
No 10
>4gyx_A Type III collagen fragment in A HOST peptide STAB the cysteine knot; collagen triple helix, type III collagen cysteine knot, BLOO clotting; 1.49A {Homo sapiens}
Probab=88.09 E-value=0.51 Score=36.42 Aligned_cols=21 Identities=57% Similarity=1.153 Sum_probs=8.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q psy17790 49 PGSPGFPGLEGDVGFPGLPGR 69 (2564)
Q Consensus 49 ~G~~G~~G~~G~~G~~G~~G~ 69 (2564)
+|++|..|.+|..|++|++|+
T Consensus 3 pgppgprgqpgvmgfpgppgp 23 (31)
T 4gyx_A 3 PGPPGPRGQPGVMGFPGPPGP 23 (31)
T ss_dssp CCCCCCCCCCCCCCCCCCCCC
T ss_pred CCCCCCCCCCccccCCCCCCC
Confidence 333333333344444444333
No 11
>3gxe_F Collagen alpha-1(I) chain; protein-peptide complex, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3gxe_E*
Probab=83.78 E-value=0.64 Score=35.41 Aligned_cols=15 Identities=47% Similarity=0.705 Sum_probs=5.8
Q ss_pred CCCCCCCCCCCCCCC
Q psy17790 1999 TPGRPGSKGEPGDEG 2013 (2564)
Q Consensus 1999 ~~G~~G~~G~~G~~G 2013 (2564)
.+|++|+||++|++|
T Consensus 5 ~pG~pG~KG~rG~~G 19 (23)
T 3gxe_F 5 TAGLXGMKGHRGFSG 19 (26)
T ss_pred CCCCCCCCCCcCCCC
Confidence 333333444444333
No 12
>1pwb_A SP-D, PSP-D, pulmonary surfactant-associated protein D; collectin, C-type lectin, alpha-helical coiled coil, carbohydrate recognition domain; HET: GLC; 1.40A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1 PDB: 1pw9_A* 3ikn_A* 3ikp_A* 3ikq_A* 3ikr_A* 2rie_A* 2ggx_A* 2ggu_A* 2ork_A* 2orj_A* 2ria_A* 2rib_A* 2ric_A* 2rid_A* 2os9_A* 3dbz_A 3g81_A* 3g83_A* 1b08_A 3g84_A* ...
Probab=40.62 E-value=7.6 Score=43.24 Aligned_cols=8 Identities=0% Similarity=0.077 Sum_probs=5.3
Q ss_pred CCCccccc
Q psy17790 2238 SKLWSGYS 2245 (2564)
Q Consensus 2238 ~~lw~GyS 2245 (2564)
..+|+|.+
T Consensus 111 ~~~WIGl~ 118 (177)
T 1pwb_A 111 EAAFLSMT 118 (177)
T ss_dssp CCEECSCB
T ss_pred CcEEEEEe
Confidence 56677765
No 13
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=31.00 E-value=17 Score=26.17 Aligned_cols=16 Identities=38% Similarity=0.968 Sum_probs=12.7
Q ss_pred CCCcccEEecCC-Cccc
Q psy17790 2381 FRPTPFIQCHGV-GSCN 2396 (2564)
Q Consensus 2381 f~~~pfi~c~g~-g~c~ 2396 (2564)
....|+|+||.| +.|.
T Consensus 3 kkpvpiiycnrrtgkcq 19 (21)
T 8tfv_A 3 KKPVPIIYCNRRTGKCQ 19 (26)
T ss_dssp CCCCCCEEEEGGGTEEE
T ss_pred CCcccEEEEcCccccee
Confidence 356899999986 7885
No 14
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=29.25 E-value=29 Score=35.18 Aligned_cols=47 Identities=21% Similarity=0.355 Sum_probs=31.4
Q ss_pred CCCcCCCCCcccEEecCCCcccccCCCCceeeecCcCccccCCCccccccccCCCCceeeeEeecccCCCCCccc
Q psy17790 2375 GSCLQDFRPTPFIQCHGVGSCNYYSTASSFWLATLDDRDQWRKPRPQTLKANDLKTRISRCAVCLRRKSEPGRLV 2449 (2564)
Q Consensus 2375 gscl~~f~~~pfi~c~g~g~c~~~~~~~s~wl~~~~~~~~~~~p~~~~~~~~~~~~~isrc~vc~~~~~~~~~~~ 2449 (2564)
-||+..|+ =+|+||.+-.|.-- +. .|.++..||-+|-+..-+-+++.
T Consensus 32 KsCWf~~k--~LV~C~dHYLCl~C----------Lt----------------lmL~~SdrCpIC~~pLPtkl~~~ 78 (99)
T 2ko5_A 32 KSCWFENK--GLVECNNHYLCLNC----------LT----------------LLLSVSNRCPICKMPLPTKLRPS 78 (99)
T ss_dssp CSSCSCCS--SEEECSSCEEEHHH----------HH----------------HTCSSSSEETTTTEECCCCSCTT
T ss_pred hhhccccC--CeeeecchhhHHHH----------HH----------------HHHhhccCCcccCCcCCcceecC
Confidence 36766555 57888887666432 11 14577889999988877766655
Done!