RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17790
(2564 letters)
>gnl|CDD|128421 smart00111, C4, C-terminal tandem repeated domain in type 4
procollagens. Duplicated domain in C-terminus of type 4
collagens. Mutations in alpha-5 collagen IV are
associated with X-linked Alport syndrome.
Length = 114
Score = 184 bits (469), Expect = 3e-54
Identities = 63/115 (54%), Positives = 76/115 (66%), Gaps = 2/115 (1%)
Query: 2328 TRAIAIHSQSVTIPSCPGGWEELWVGFSFLMHTDAGSGGGGQSLISPGSCLQDFRPTPFI 2387
IA+HSQ+ +P CP GW ELW G+SFLMHT G GQ L SPGSCL+ FR PFI
Sbjct: 1 GFVIAVHSQTTNVPQCPAGWVELWTGYSFLMHT-GNGEGHGQDLGSPGSCLERFRTMPFI 59
Query: 2388 QCHGVGSCNYYSTAS-SFWLATLDDRDQWRKPRPQTLKANDLKTRISRCAVCLRR 2441
+C+G G CNY S SFWL+T++ DQ+ PRP T KA DL+ ISRC VC +
Sbjct: 60 ECNGRGVCNYASRNDYSFWLSTIEPSDQFTAPRPMTPKAGDLRPYISRCQVCEKP 114
Score = 144 bits (365), Expect = 4e-40
Identities = 57/114 (50%), Positives = 73/114 (64%), Gaps = 4/114 (3%)
Query: 2218 GFFLTFHSQTDMEPECPRYTSKLWSGYSLLHISGDNKAHTQDLGSPGSCLPRFSTMPFLF 2277
GF + HSQT P+CP +LW+GYS L +G+ + H QDLGSPGSCL RF TMPF+
Sbjct: 1 GFVIAVHSQTTNVPQCPAGWVELWTGYSFLMHTGNGEGHGQDLGSPGSCLERFRTMPFIE 60
Query: 2278 CSLTQTCDYASRGDNSYWLSSTEPMLKTMEPIP----SADLKKYVSRCSVCEST 2327
C+ C+YASR D S+WLS+ EP + P P + DL+ Y+SRC VCE
Sbjct: 61 CNGRGVCNYASRNDYSFWLSTIEPSDQFTAPRPMTPKAGDLRPYISRCQVCEKP 114
>gnl|CDD|144854 pfam01413, C4, C-terminal tandem repeated domain in type 4
procollagen. Duplicated domain in C-terminus of type 4
collagens. Mutations in alpha-5 collagen IV are
associated with X-linked Alport syndrome.
Length = 110
Score = 170 bits (432), Expect = 5e-49
Identities = 58/116 (50%), Positives = 71/116 (61%), Gaps = 8/116 (6%)
Query: 2328 TRAIAIHSQSVTIPSCPGGWEELWVGFSFLMHTDAGSGGGGQSLISPGSCLQDFRPTPFI 2387
IA+HSQ+ IP CP GW LW G+SFLMHT + G GQ L SPGSCL+ FR PFI
Sbjct: 1 GFLIAVHSQTTQIPQCPAGWSSLWTGYSFLMHT-GNAEGHGQDLGSPGSCLERFRTMPFI 59
Query: 2388 QCHGVGSCNYYSTAS-SFWLATLDDRDQWRKPRPQTLKAN-DLKTRISRCAVCLRR 2441
+C+G G CNY S SFWL+T++ P P T KA +++ ISRC VC
Sbjct: 60 ECNGNGVCNYASRNDYSFWLSTIE-----PMPMPMTPKAGREIRPYISRCQVCEAP 110
Score = 162 bits (412), Expect = 2e-46
Identities = 57/110 (51%), Positives = 73/110 (66%)
Query: 2218 GFFLTFHSQTDMEPECPRYTSKLWSGYSLLHISGDNKAHTQDLGSPGSCLPRFSTMPFLF 2277
GF + HSQT P+CP S LW+GYS L +G+ + H QDLGSPGSCL RF TMPF+
Sbjct: 1 GFLIAVHSQTTQIPQCPAGWSSLWTGYSFLMHTGNAEGHGQDLGSPGSCLERFRTMPFIE 60
Query: 2278 CSLTQTCDYASRGDNSYWLSSTEPMLKTMEPIPSADLKKYVSRCSVCEST 2327
C+ C+YASR D S+WLS+ EPM M P +++ Y+SRC VCE+
Sbjct: 61 CNGNGVCNYASRNDYSFWLSTIEPMPMPMTPKAGREIRPYISRCQVCEAP 110
>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein;
Provisional.
Length = 617
Score = 44.4 bits (105), Expect = 9e-04
Identities = 38/174 (21%), Positives = 47/174 (27%), Gaps = 10/174 (5%)
Query: 1811 ERGDPGRDGLPGRDGKPGLPGVKGAPGEYGIDGPPGPPGAPGLSRKGNPGK-PGYPGRIV 1869
E PGR G G G P + + P P P ++ PG P
Sbjct: 109 ELPRPGRRPYEGYGGPRADDRPPGLPRQDQL--PTARPAYPAYQQRPEPGAWPRAADDYG 166
Query: 1870 EGLPGLPGLPGEDGKPGTPGVRGEPGEPGRPIPGDGLPGRDGKPGLPGVKGA----PGEY 1925
L P +P E R G P D + P
Sbjct: 167 WQQQRLGFPPRAP--YASPASYAPEQERDREPYDAGRPEYDQRRRDYDHPRPDWDRPRRD 224
Query: 1926 GIDGPPGPPGAPGLSRKGNPGKPGYPGRIVEGLPGLPGLPGEDGKPGT-PGGQS 1978
D P PPGA + R G +V P PG P PG +
Sbjct: 225 RTDRPEPPPGAGHVHRGGPGPPERDDAPVVPIRPSAPGPLAAQPAPAPGPGEPT 278
Score = 37.5 bits (87), Expect = 0.11
Identities = 41/188 (21%), Positives = 51/188 (27%), Gaps = 23/188 (12%)
Query: 700 RPGIDGYPGIKGVKGVQGREGW-RGKEGKDGRPGDAGVKGDKGAPGLAGRDGSPGEPGSK 758
RPG Y G G + G R + RP + PG P
Sbjct: 112 RPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPA-YPAYQQRPEPG-----AWPRAADDY 165
Query: 759 GDEGLPGLPGLQGPEGDRGIYDPTLDKIEPGVTGPQGPIGPRGEPGEDGYNGKPGPPGLQ 818
G + + P Y P ++ + R D P +
Sbjct: 166 GWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQRRRDY-DHPRPDWDRPR-R 223
Query: 819 GRTGEPGPPGIVGPIGPKGISIPGEAGV-DGTPGPPGQPGVYGPPGIPGLPGPKGQQGVT 877
RT P PP PG V G PGPP + P P PGP Q
Sbjct: 224 DRTDRPEPP-------------PGAGHVHRGGPGPPERDDAPVVPIRPSAPGPLAAQPAP 270
Query: 878 IIGPPGQD 885
GP
Sbjct: 271 APGPGEPT 278
Score = 34.8 bits (80), Expect = 0.76
Identities = 34/191 (17%), Positives = 50/191 (26%), Gaps = 19/191 (9%)
Query: 846 VDGTPGPPGQPGVYGPPGIPGLPGPKGQQGVTIIGPPGQDGVPGQDGFKGVQGDRGDPGV 905
VD + G P P PP P+ + G +G G G +
Sbjct: 88 VDPSAGEPAPP----PPHARRTSEPELPRP----GRRPYEGYGGPRADDRPPGLPRQDQL 139
Query: 906 QES----PAHVAHQTLSFGPRTPGGPNRKAFTAMNPLQGPYGAPGDEGRDGLP------- 954
+ PA+ PR + P + PY +P +
Sbjct: 140 PTARPAYPAYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDA 199
Query: 955 GRNGVPGSKGDPATIPKEYLRGDAGYDGLPGEPGTPGDMGLKGEAGDTISSEVNMKGEKG 1014
GR + D ++ R P P G + G +
Sbjct: 200 GRPEYDQRRRDYDHPRPDWDRPRRDRTDRPEPPPGAGHVHRGGPGPPERDDAPVVPIRPS 259
Query: 1015 YPGPPGDQGAP 1025
PGP Q AP
Sbjct: 260 APGPLAAQPAP 270
>gnl|CDD|189968 pfam01391, Collagen, Collagen triple helix repeat (20 copies).
Members of this family belong to the collagen
superfamily. Collagens are generally extracellular
structural proteins involved in formation of connective
tissue structure. The alignment contains 20 copies of the
G-X-Y repeat that forms a triple helix. The first
position of the repeat is glycine, the second and third
positions can be any residue but are frequently proline
and hydroxyproline. Collagens are post translationally
modified by proline hydroxylase to form the
hydroxyproline residues. Defective hydroxylation is the
cause of scurvy. Some members of the collagen superfamily
are not involved in connective tissue structure but share
the same triple helical structure.
Length = 60
Score = 37.5 bits (88), Expect = 0.004
Identities = 35/60 (58%), Positives = 35/60 (58%)
Query: 1672 GWPGEPGPRGPPGVKGEPGMDGDPGLSGNPGIPGDRGPRGGPGLSGAPGPKGEPGDIGLP 1731
G PG PGP GPPG G PG G PG G PG PG GP G PG G PGP G PG G P
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPGPP 60
Score = 36.7 bits (86), Expect = 0.007
Identities = 35/59 (59%), Positives = 35/59 (59%)
Query: 1085 GLPGLPGAIGPQGEPGFPGYQGPKGPVGMRGPPGIPGAPGFEGEPGIPGDKGIPGDSGP 1143
G PG PG GP G PG PG GP GP G GPPG PG PG G PG PG G PG GP
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPGP 59
Score = 36.3 bits (85), Expect = 0.009
Identities = 34/58 (58%), Positives = 34/58 (58%)
Query: 1079 GIQGLPGLPGLPGAIGPQGEPGFPGYQGPKGPVGMRGPPGIPGAPGFEGEPGIPGDKG 1136
G G PG PG PG GP G PG PG GP GP G GPPG PG PG G PG PG G
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPG 58
Score = 36.3 bits (85), Expect = 0.009
Identities = 35/59 (59%), Positives = 35/59 (59%)
Query: 1663 GLPGLNGTHGWPGEPGPRGPPGVKGEPGMDGDPGLSGNPGIPGDRGPRGGPGLSGAPGP 1721
G PG G G PG PGP GPPG G PG G PG G PG PG GP G PG GAPGP
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPGP 59
Score = 35.9 bits (84), Expect = 0.015
Identities = 34/58 (58%), Positives = 34/58 (58%)
Query: 1076 GATGIQGLPGLPGLPGAIGPQGEPGFPGYQGPKGPVGMRGPPGIPGAPGFEGEPGIPG 1133
G G G PG PG PG GP G PG PG GP GP G GPPG PG PG G PG PG
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPG 58
Score = 35.2 bits (82), Expect = 0.022
Identities = 33/60 (55%), Positives = 33/60 (55%)
Query: 1064 GRPGDWGPKGAQGATGIQGLPGLPGLPGAIGPQGEPGFPGYQGPKGPVGMRGPPGIPGAP 1123
G PG GP G G G G PG PG PG GP G PG PG GP GP G G PG PG P
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPGPP 60
Score = 35.2 bits (82), Expect = 0.025
Identities = 35/58 (60%), Positives = 35/58 (60%)
Query: 1082 GLPGLPGLPGAIGPQGEPGFPGYQGPKGPVGMRGPPGIPGAPGFEGEPGIPGDKGIPG 1139
G PG PG PG GP G PG PG GP GP G GPPG PG PG G PG PG G PG
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPG 58
Score = 34.4 bits (80), Expect = 0.050
Identities = 32/60 (53%), Positives = 32/60 (53%)
Query: 1058 GFKGRPGRPGDWGPKGAQGATGIQGLPGLPGLPGAIGPQGEPGFPGYQGPKGPVGMRGPP 1117
G G PG PG GP G G G G PG PG PG GP G PG PG GP G G GPP
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPGPP 60
Score = 34.0 bits (79), Expect = 0.070
Identities = 31/59 (52%), Positives = 31/59 (52%)
Query: 292 GNPGDTGPDGPPGPPGKEGIMGEWGETGEKGMRGDKGFQGPKGRAGLQGYPGPPGYPGP 350
G PG GP GPPGPPG G G G G G G G GP G G G PG PG PGP
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPGP 59
Score = 34.0 bits (79), Expect = 0.070
Identities = 30/58 (51%), Positives = 30/58 (51%)
Query: 295 GDTGPDGPPGPPGKEGIMGEWGETGEKGMRGDKGFQGPKGRAGLQGYPGPPGYPGPKG 352
G GP GPPGPPG G G G G G G G GP G G G PGPPG PG G
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPG 58
Score = 33.6 bits (78), Expect = 0.077
Identities = 30/60 (50%), Positives = 30/60 (50%)
Query: 1315 GTPGVPGMPGLKGITGDKGSTGLDGTPGPDGDRGKKGSRGPLGPRGQQGDPGPDGIPGRP 1374
G PG PG PG G G G G G PGP G G G GP GP G G PG G PG P
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPGPP 60
Score = 33.6 bits (78), Expect = 0.091
Identities = 32/60 (53%), Positives = 32/60 (53%)
Query: 1654 GPKGYAGLAGLPGLNGTHGWPGEPGPRGPPGVKGEPGMDGDPGLSGNPGIPGDRGPRGGP 1713
GP G G G PG G G PG PGP GPPG G PG G PG G PG PG G G P
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPGPP 60
Score = 33.2 bits (77), Expect = 0.11
Identities = 33/60 (55%), Positives = 33/60 (55%)
Query: 1651 GEPGPKGYAGLAGLPGLNGTHGWPGEPGPRGPPGVKGEPGMDGDPGLSGNPGIPGDRGPR 1710
G PGP G G G PG G G PG PGP GPPG G PG G PG G PG PG GP
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPGPP 60
Score = 33.2 bits (77), Expect = 0.12
Identities = 31/58 (53%), Positives = 31/58 (53%)
Query: 519 GALGEVGPKGFQGEPGPKGYAGLAGLPGLNGTHGWPGEPGPRGPPGVKGEPGMDGDPG 576
G G GP G G PGP G G G PG G G PG PGP GPPG G PG G PG
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPG 58
Score = 33.2 bits (77), Expect = 0.12
Identities = 31/58 (53%), Positives = 31/58 (53%)
Query: 1639 GALGEVGPKGFQGEPGPKGYAGLAGLPGLNGTHGWPGEPGPRGPPGVKGEPGMDGDPG 1696
G G GP G G PGP G G G PG G G PG PGP GPPG G PG G PG
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPG 58
Score = 32.5 bits (75), Expect = 0.24
Identities = 32/60 (53%), Positives = 32/60 (53%)
Query: 1648 GFQGEPGPKGYAGLAGLPGLNGTHGWPGEPGPRGPPGVKGEPGMDGDPGLSGNPGIPGDR 1707
G G PGP G G G PG G G PG PGP GPPG G PG G PG G PG PG
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPGPP 60
Score = 32.1 bits (74), Expect = 0.28
Identities = 35/64 (54%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 1871 GLPGLPGLPGEDGKPGTPGVRGEPGEPGRPIPGDGLPGRDGKPGLPGVKGAPGEYGIDGP 1930
G PG PG PG G PG PG G PG PG P G PG G PG PG G PG G G
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPP----GPPGPPGPPGPPGPPGPPGPPGAPGA 56
Query: 1931 PGPP 1934
PGPP
Sbjct: 57 PGPP 60
Score = 32.1 bits (74), Expect = 0.30
Identities = 36/62 (58%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 807 GYNGKPGPPGLQGRTGEPGPPGIVGPIGPKGISIPGEAGVDGTPGPPGQPGVYGPPGIPG 866
G G PGPPG G G PGPPG GP GP G PG G G PGPPG PG G PG PG
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGP--PGPPGPPGPPGPPGPPGPPGAPGAPG 58
Query: 867 LP 868
P
Sbjct: 59 PP 60
Score = 32.1 bits (74), Expect = 0.31
Identities = 30/58 (51%), Positives = 30/58 (51%)
Query: 298 GPDGPPGPPGKEGIMGEWGETGEKGMRGDKGFQGPKGRAGLQGYPGPPGYPGPKGLDG 355
GP GPPGPPG G G G G G G G GP G G G PGPPG PG G G
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPG 58
Score = 32.1 bits (74), Expect = 0.33
Identities = 31/57 (54%), Positives = 31/57 (54%)
Query: 1214 PGPPGTPGRPGSKGEPGDEGPVGYRGIPGPDGRKGVSGPKGLPGLTGETGLPGLKGE 1270
PGPPG PG PG G PG GP G G PGP G G GP G PG G G PG G
Sbjct: 3 PGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPGP 59
Score = 32.1 bits (74), Expect = 0.34
Identities = 30/58 (51%), Positives = 30/58 (51%)
Query: 1055 GPTGFKGRPGRPGDWGPKGAQGATGIQGLPGLPGLPGAIGPQGEPGFPGYQGPKGPVG 1112
GP G G PG PG GP G G G G PG PG PG GP G PG PG G G G
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPG 58
Score = 32.1 bits (74), Expect = 0.34
Identities = 33/61 (54%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 1011 GEKGYPGPPGDQGAPGFEGEPGIPGDKGIPGDSGPIGEPGISLQGPTGFKGRPGRPGDWG 1070
G G PGPPG G PG G PG PG G PG GP G PG GP G G PG PG G
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGP--PGPPGPPGPPGAPGAPG 58
Query: 1071 P 1071
P
Sbjct: 59 P 59
Score = 31.7 bits (73), Expect = 0.42
Identities = 33/55 (60%), Positives = 33/55 (60%)
Query: 1094 GPQGEPGFPGYQGPKGPVGMRGPPGIPGAPGFEGEPGIPGDKGIPGDSGPIGEPG 1148
GP G PG PG GP GP G GPPG PG PG G PG PG G PG GP G PG
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPG 55
Score = 31.7 bits (73), Expect = 0.43
Identities = 30/51 (58%), Positives = 30/51 (58%)
Query: 787 EPGVTGPQGPIGPRGEPGEDGYNGKPGPPGLQGRTGEPGPPGIVGPIGPKG 837
PG GP GP GP G PG G G PGPPG G G PGPPG GP GP G
Sbjct: 2 PPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPG 52
Score = 31.3 bits (72), Expect = 0.51
Identities = 36/65 (55%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 792 GPQGPIGPRGEPGEDGYNGKPGPPGLQGRTGEPGPPGIVGPIGPKGISIPGEAGVDGTPG 851
GP GP GP G PG G G PGPPG G G PGPPG GP GP PG G G PG
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGP-----PGPPGPPGAPG 55
Query: 852 PPGQP 856
PG P
Sbjct: 56 APGPP 60
Score = 31.3 bits (72), Expect = 0.52
Identities = 28/60 (46%), Positives = 28/60 (46%)
Query: 316 GETGEKGMRGDKGFQGPKGRAGLQGYPGPPGYPGPKGLDGCNGTDGAPGIAGIPGTSGKR 375
G G G G G GP G G G PGPPG PGP G G G G PG G PG G
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPGPP 60
Score = 31.3 bits (72), Expect = 0.56
Identities = 31/60 (51%), Positives = 31/60 (51%)
Query: 1336 GLDGTPGPDGDRGKKGSRGPLGPRGQQGDPGPDGIPGRPGRVLHPGATGIPGDKGDIGPP 1395
G G PGP G G G GP GP G G PGP G PG PG PG G PG G GPP
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPGPP 60
Score = 31.3 bits (72), Expect = 0.63
Identities = 34/67 (50%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 1782 GFPGYQGPKGPVGMRGPPGIPGLTDVMLAERGDPGRDGLPGRDGKPGLPGVKGAPGEYGI 1841
G PG GP GP G GPPG PG G PG G PG G PG PG G PG G
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPG-------PPGPPGPPGPPGPPGPPGPPGPPGPPGPPGA 53
Query: 1842 DGPPGPP 1848
G PGPP
Sbjct: 54 PGAPGPP 60
Score = 31.3 bits (72), Expect = 0.65
Identities = 29/59 (49%), Positives = 29/59 (49%)
Query: 1435 GQMGPPGAKGVIGDYGDAGYPGEDGESAFSGLQGDKGEPGQTGPMGYPGLPGIPGEPGP 1493
G GPPG G G G G PG G G G G PG GP G PG PG PG PGP
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPGP 59
Score = 30.9 bits (71), Expect = 0.74
Identities = 26/58 (44%), Positives = 26/58 (44%)
Query: 711 GVKGVQGREGWRGKEGKDGRPGDAGVKGDKGAPGLAGRDGSPGEPGSKGDEGLPGLPG 768
G G G G G G G PG G G G PG G G PG PG G G PG PG
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPG 58
Score = 30.9 bits (71), Expect = 0.75
Identities = 31/57 (54%), Positives = 31/57 (54%)
Query: 525 GPKGFQGEPGPKGYAGLAGLPGLNGTHGWPGEPGPRGPPGVKGEPGMDGDPGLSGNP 581
GP G G PGP G G G PG G G PG PGP GPPG G PG G PG G P
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAP 57
Score = 30.9 bits (71), Expect = 0.90
Identities = 27/48 (56%), Positives = 27/48 (56%)
Query: 1994 PGPPGTPGRPGSKGEPGDEGPVGYRGIPGPDGRKGVAGPKGLPGLTGE 2041
PGPPG PG PG G PG GP G G PGP G G GP G PG G
Sbjct: 12 PGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPGP 59
Score = 30.5 bits (70), Expect = 1.0
Identities = 30/57 (52%), Positives = 30/57 (52%)
Query: 1055 GPTGFKGRPGRPGDWGPKGAQGATGIQGLPGLPGLPGAIGPQGEPGFPGYQGPKGPV 1111
GP G G PG PG GP G G G G PG PG PG GP G PG PG G GP
Sbjct: 4 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPGPP 60
Score = 30.5 bits (70), Expect = 1.0
Identities = 29/60 (48%), Positives = 29/60 (48%)
Query: 1393 GPPGSTGFVGKPGSTGFVGKPGLQGLPGNKGEQGRRGTPGPVGQMGPPGAKGVIGDYGDA 1452
GPPG G G PG G G PG G PG G G G PGP G GPPG G G G
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPGPP 60
Score = 30.5 bits (70), Expect = 1.2
Identities = 28/60 (46%), Positives = 28/60 (46%)
Query: 92 GEAGEAAINGIPGDPGAPGRMGEKGSRGPDGKMGPPGNKGLDGKHGTQGIEGPPGPPGAP 151
G G G PG PG PG G G GP G GPPG G G G G G PG PG P
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPGPP 60
Score = 30.1 bits (69), Expect = 1.4
Identities = 29/55 (52%), Positives = 29/55 (52%)
Query: 516 GSMGALGEVGPKGFQGEPGPKGYAGLAGLPGLNGTHGWPGEPGPRGPPGVKGEPG 570
G G G GP G G PGP G G G PG G G PG PGP GPPG G PG
Sbjct: 4 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPG 58
Score = 30.1 bits (69), Expect = 1.4
Identities = 29/55 (52%), Positives = 29/55 (52%)
Query: 1636 GSMGALGEVGPKGFQGEPGPKGYAGLAGLPGLNGTHGWPGEPGPRGPPGVKGEPG 1690
G G G GP G G PGP G G G PG G G PG PGP GPPG G PG
Sbjct: 4 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPG 58
Score = 30.1 bits (69), Expect = 1.4
Identities = 34/66 (51%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 44 GPPGEPGSPGFPGLEGDVGFPGLPGRPGLKGPKGNDCGFCPPGRPGVKGEAGEAAINGIP 103
GPPG PG PG PG G G PG PG PG GP G PPG PG G G G P
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPG------PPGPPGPPGPPGPPGPPGAP 54
Query: 104 GDPGAP 109
G PG P
Sbjct: 55 GAPGPP 60
Score = 30.1 bits (69), Expect = 1.4
Identities = 29/52 (55%), Positives = 29/52 (55%)
Query: 1994 PGPPGTPGRPGSKGEPGDEGPVGYRGIPGPDGRKGVAGPKGLPGLTGETGLP 2045
PGPPG PG PG G PG GP G G PGP G G GP G PG G G P
Sbjct: 9 PGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPGPP 60
Score = 30.1 bits (69), Expect = 1.5
Identities = 29/52 (55%), Positives = 29/52 (55%)
Query: 1214 PGPPGTPGRPGSKGEPGDEGPVGYRGIPGPDGRKGVSGPKGLPGLTGETGLP 1265
PGPPG PG PG G PG GP G G PGP G G GP G PG G G P
Sbjct: 9 PGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPGPP 60
Score = 30.1 bits (69), Expect = 1.6
Identities = 26/55 (47%), Positives = 26/55 (47%)
Query: 723 GKEGKDGRPGDAGVKGDKGAPGLAGRDGSPGEPGSKGDEGLPGLPGLQGPEGDRG 777
G G G PG G G G PG G G PG PG G G PG PG GP G G
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPG 55
Score = 29.8 bits (68), Expect = 1.8
Identities = 27/60 (45%), Positives = 27/60 (45%)
Query: 675 GPKGMPGARGDRGPYGLKGERGVPGRPGIDGYPGIKGVKGVQGREGWRGKEGKDGRPGDA 734
GP G PG G GP G G G PG PG G PG G G G G G G G PG
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPGPP 60
Score = 29.8 bits (68), Expect = 1.8
Identities = 28/59 (47%), Positives = 28/59 (47%)
Query: 319 GEKGMRGDKGFQGPKGRAGLQGYPGPPGYPGPKGLDGCNGTDGAPGIAGIPGTSGKRGE 377
G G G G GP G G G PGPPG PGP G G G G PG G PG G G
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPGP 59
Score = 29.8 bits (68), Expect = 1.9
Identities = 28/55 (50%), Positives = 28/55 (50%)
Query: 1218 GTPGRPGSKGEPGDEGPVGYRGIPGPDGRKGVSGPKGLPGLTGETGLPGLKGEEG 1272
G PG PG G PG GP G G PGP G G GP G PG G G PG G G
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPG 55
Score = 29.8 bits (68), Expect = 2.1
Identities = 30/58 (51%), Positives = 30/58 (51%)
Query: 1330 GDKGSTGLDGTPGPDGDRGKKGSRGPLGPRGQQGDPGPDGIPGRPGRVLHPGATGIPG 1387
G G G G PGP G G G GP GP G G PGP G PG PG PGA G PG
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPG 58
Score = 29.8 bits (68), Expect = 2.1
Identities = 30/58 (51%), Positives = 30/58 (51%)
Query: 1357 GPRGQQGDPGPDGIPGRPGRVLHPGATGIPGDKGDIGPPGSTGFVGKPGSTGFVGKPG 1414
GP G G PGP G PG PG PG G PG G GPPG G G PG G G PG
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPG 58
Score = 29.8 bits (68), Expect = 2.2
Identities = 31/58 (53%), Positives = 31/58 (53%)
Query: 1215 GPPGTPGRPGSKGEPGDEGPVGYRGIPGPDGRKGVSGPKGLPGLTGETGLPGLKGEEG 1272
GPPG PG PG G PG GP G G PGP G G GP G PG G G PG G G
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPG 58
Score = 29.4 bits (67), Expect = 2.6
Identities = 29/58 (50%), Positives = 29/58 (50%)
Query: 1387 GDKGDIGPPGSTGFVGKPGSTGFVGKPGLQGLPGNKGEQGRRGTPGPVGQMGPPGAKG 1444
G G GPPG G G PG G G PG G PG G G G PGP G G PGA G
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPG 58
Score = 29.4 bits (67), Expect = 2.7
Identities = 29/55 (52%), Positives = 29/55 (52%)
Query: 1749 GLTGEKGWRGDVGWPGRNGTKGLPGAIGPQGEPGFPGYQGPKGPVGMRGPPGIPG 1803
G G G G G PG G G PG GP G PG PG GP GP G GPPG PG
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPG 55
Score = 29.4 bits (67), Expect = 2.7
Identities = 27/58 (46%), Positives = 27/58 (46%)
Query: 2094 GIAGTNGAKGETGPPGDTGVEGYPGTPGAKGDRGFIGDTGLPGMDGTPGEKGFQGEPG 2151
G G G G GPPG G G PG PG G G G G PG G PG G G PG
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPG 58
Score = 29.4 bits (67), Expect = 3.1
Identities = 29/58 (50%), Positives = 29/58 (50%)
Query: 1746 GMTGLTGEKGWRGDVGWPGRNGTKGLPGAIGPQGEPGFPGYQGPKGPVGMRGPPGIPG 1803
G G G G G G PG G G PG GP G PG PG GP GP G G PG PG
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPG 58
Score = 29.0 bits (66), Expect = 3.5
Identities = 30/52 (57%), Positives = 30/52 (57%)
Query: 101 GIPGDPGAPGRMGEKGSRGPDGKMGPPGNKGLDGKHGTQGIEGPPGPPGAPG 152
G PG PG PG G G GP G GPPG G G G G GPPGPPGAPG
Sbjct: 4 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPG 55
Score = 29.0 bits (66), Expect = 3.9
Identities = 29/58 (50%), Positives = 29/58 (50%)
Query: 1333 GSTGLDGTPGPDGDRGKKGSRGPLGPRGQQGDPGPDGIPGRPGRVLHPGATGIPGDKG 1390
G G G PGP G G G GP GP G G PGP G PG PG PG G PG G
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPG 58
Score = 29.0 bits (66), Expect = 4.2
Identities = 33/54 (61%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 822 GEPGPPGIVGPIGPKGISIPGEAGVDGTPGPPGQPGVYGPPGIPGLPGPKGQQG 875
G PGPPG GP GP G PG G G PGPPG PG GPPG PG PGP G G
Sbjct: 1 GPPGPPGPPGPPGPPGP--PGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPG 52
Score = 28.6 bits (65), Expect = 4.7
Identities = 25/46 (54%), Positives = 25/46 (54%)
Query: 107 GAPGRMGEKGSRGPDGKMGPPGNKGLDGKHGTQGIEGPPGPPGAPG 152
G PG G G GP G GPPG G G G G GPPGPPG PG
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPG 46
Score = 28.6 bits (65), Expect = 5.3
Identities = 27/55 (49%), Positives = 27/55 (49%)
Query: 515 QGSMGALGEVGPKGFQGEPGPKGYAGLAGLPGLNGTHGWPGEPGPRGPPGVKGEP 569
G G G GP G G PGP G G G PG G G PG PGP G PG G P
Sbjct: 6 PGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPGPP 60
Score = 28.6 bits (65), Expect = 5.3
Identities = 27/55 (49%), Positives = 27/55 (49%)
Query: 1635 QGSMGALGEVGPKGFQGEPGPKGYAGLAGLPGLNGTHGWPGEPGPRGPPGVKGEP 1689
G G G GP G G PGP G G G PG G G PG PGP G PG G P
Sbjct: 6 PGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPGPP 60
Score = 28.2 bits (64), Expect = 6.9
Identities = 29/60 (48%), Positives = 29/60 (48%)
Query: 325 GDKGFQGPKGRAGLQGYPGPPGYPGPKGLDGCNGTDGAPGIAGIPGTSGKRGEFGADGQR 384
G G GP G G G PGPPG PGP G G G G PG G PG G G GA G
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPGPP 60
Score = 27.8 bits (63), Expect = 10.0
Identities = 29/60 (48%), Positives = 29/60 (48%)
Query: 1740 GDFGEPGMTGLTGEKGWRGDVGWPGRNGTKGLPGAIGPQGEPGFPGYQGPKGPVGMRGPP 1799
G G PG G G G G G PG G G PG GP G PG PG GP G G GPP
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPGPP 60
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau;
Validated.
Length = 824
Score = 41.5 bits (98), Expect = 0.006
Identities = 33/179 (18%), Positives = 37/179 (20%), Gaps = 2/179 (1%)
Query: 1779 GEPGFPGYQGPKGPVGMRGPPGIPGLTDVMLAERGDPGRDGLPGRDGKPGLPGVKGAPGE 1838
PG G +GP P P A P G P APG
Sbjct: 590 PAPGAAGGEGPPAPASSGPPEEAARPAAP--AAPAAPAAPAPAGAAAAPAEASAAPAPGV 647
Query: 1839 YGIDGPPGPPGAPGLSRKGNPGKPGYPGRIVEGLPGLPGLPGEDGKPGTPGVRGEPGEPG 1898
+ P P S G+ G P P G + P
Sbjct: 648 AAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAA 707
Query: 1899 RPIPGDGLPGRDGKPGLPGVKGAPGEYGIDGPPGPPGAPGLSRKGNPGKPGYPGRIVEG 1957
P G P AP D P PP P
Sbjct: 708 TPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAP 766
Score = 40.7 bits (96), Expect = 0.013
Identities = 28/212 (13%), Positives = 40/212 (18%), Gaps = 4/212 (1%)
Query: 788 PGVTGPQGPIGPRGEPGEDGYNGKPGPPGLQGRTGEPGPPGIVGPIGPKGISIPGEAGVD 847
GP E P P G P P E
Sbjct: 597 GEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPA-EASAAPAPGVAAPEHHPK 655
Query: 848 GTPGPPGQPGVYGPPGIPGLPGPKGQQGVTIIGPP--GQDGVPGQDGFKGVQGDRGDPGV 905
P G G P G P P P Q
Sbjct: 656 HVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQAD 715
Query: 906 QESPAHVAHQTLSFGPRTPGGPNRKAFTAMNPLQGPYGAPGDEGRDGLPGRNGVPGSKGD 965
+ + P + P GAP P P +
Sbjct: 716 DPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPP 775
Query: 966 PATIPK-EYLRGDAGYDGLPGEPGTPGDMGLK 996
P+ + E + D + ++ ++
Sbjct: 776 PSPPSEEEEMAEDDAPSMDDEDRRDAEEVAME 807
Score = 39.6 bits (93), Expect = 0.029
Identities = 39/189 (20%), Positives = 44/189 (23%), Gaps = 9/189 (4%)
Query: 1832 VKGAPGEYGIDGPPGPPGAPGLSRKGNPGKPGYPGRIV----EGLPGLPGLPGEDGKPGT 1887
V APG G +GPP P + P P P G P PG
Sbjct: 588 VGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGV 647
Query: 1888 PGVRGEPGEPGRPIPGDGLPGRDGKPGLPGVKGAPGEYGIDGPPGPPGAPGLSRKGNPGK 1947
P P DG G K G P P P GA P
Sbjct: 648 AAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAA 707
Query: 1948 PGYPGRIVEGLPGLPGLPGEDGKPGTPGGQSGGKGDRGSVGESIFFPGPPGTPGRPGSKG 2007
G+ + P P E P P G P +P
Sbjct: 708 TPPAGQADDPAAQPPQAAQGASAP-----SPAADDPVPLPPEPDDPPDPAGAPAQPPPPP 762
Query: 2008 EPGDEGPVG 2016
P
Sbjct: 763 APAPAAAPA 771
Score = 36.1 bits (84), Expect = 0.31
Identities = 37/237 (15%), Positives = 41/237 (17%), Gaps = 17/237 (7%)
Query: 741 GAPGLAGRDGSPGEPGSKGDEGLPGLPGLQGPEGDRGIYDPTLDKIEPGVTGPQGPIGPR 800
G A P P S G P P P G
Sbjct: 589 GPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAA------------PAAPAPAGAAAAP 636
Query: 801 GEPGEDGYNGKPGPPGLQGRTGEPGPPGIVGPIGPKGISIPGEAGVDGTPGPPGQPGVYG 860
E G P P P A P P G
Sbjct: 637 AEASAAPAPGVAAPEHHPKHVAVPDASDGGDG-WPAKAGGAAPAAPPPAPAPAAPAAPAG 695
Query: 861 PPGIPGLPGPKGQ-QGVTIIGPPGQDGVPGQDGFKGVQ-GDRGDPGVQESPAHVAHQTLS 918
P P P Q Q D P E
Sbjct: 696 AAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAP 755
Query: 919 FGPRTPGGPNRKAFTAMNPLQGPYGAPGDEGRDGLPGRNGVPGSKGDPATIPKEYLR 975
P P P A A P +E + + D + E L
Sbjct: 756 AQPPPPPAPAPAA--APAAAPPPSPPSEEEEMAEDDAPSMDDEDRRDAEEVAMELLE 810
Score = 35.3 bits (82), Expect = 0.51
Identities = 66/412 (16%), Positives = 82/412 (19%), Gaps = 34/412 (8%)
Query: 788 PGVTGPQGPIGPRGEPGEDG--YNGKPGPPGLQGRTGEPGPPGIVGPIGPKGISIPGEAG 845
P + + + R E E G G P + P +
Sbjct: 365 PSASDDERGLLARLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPA 424
Query: 846 VDGTPGPPGQPGVYGPPGIPGLPGPKGQQGVTIIGPPGQDGVPGQDGFKGVQGDRGDPGV 905
P P P P P P G P
Sbjct: 425 PAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAP 484
Query: 906 QESPAHVAHQTLSFGPRTPGGP--------------------NRKAFTAMNPLQGPYGAP 945
+PA A P P G +RK + + P G
Sbjct: 485 PAAPAPAAAPAAPAAPAAPAGADDAATLRERWPEILAAVPKRSRKTWAILLPEATVLGVR 544
Query: 946 GDE-----GRDGLPGRNGVPGSKGDPATIPKEYLRGDAGYDGLPGEPGTPGDMGLKGEAG 1000
GD GL R PG+ T E L GD + + G PG G +G
Sbjct: 545 GDTLVLGFSTGGLARRFASPGNAEVLVTALAEELGGDWQVEAVVG--PAPGAAGGEGPPA 602
Query: 1001 DTISSEVNMKGEKGYPGPPGDQGAPGFEGEPGIPGDKGIPGDSGPIGEPGISLQGPTGFK 1060
S P P AP G P + P
Sbjct: 603 PASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEA--SAAPAPGVAAPEHHPKHVAVP 660
Query: 1061 GRPGRPGDWGPKGAQGATGIQGLPGLPGLPGAIGPQGEP-GFPGYQGPKGPVGMRGPPGI 1119
W K A P P A P P
Sbjct: 661 DASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQ 720
Query: 1120 PGAPGFEGEPGIP-GDKGIPGDSGPIGEPGIS-LQGPTGFKGRPGRPGDWGP 1169
P P D +P P P + P
Sbjct: 721 PPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAA 772
Score = 34.6 bits (80), Expect = 0.87
Identities = 29/216 (13%), Positives = 40/216 (18%), Gaps = 9/216 (4%)
Query: 940 GPYGAPGDEGRDGLPGRNGVPGSKGDPATIPKEYLRGDAGYDGLPGEPG-----TPGDMG 994
GP P +G P PA G P +
Sbjct: 589 GPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVA 648
Query: 995 LKGEAGDTISSEVNMKGEKGYPGPPGDQGAPGFEGEPGIPGDKGIPGDSGPIGEPGISLQ 1054
++ G G+P G P G + P +
Sbjct: 649 APEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAAT 708
Query: 1055 GPTGFKGRPGRPGDWGPKGAQGATGIQGLPGLPGLPGAIGPQGEPGFPGYQGPKGPVGMR 1114
P G + LP +P Q P P
Sbjct: 709 PPAG--QADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAP 766
Query: 1115 G--PPGIPGAPGFEGEPGIPGDKGIPGDSGPIGEPG 1148
P P E + D D +
Sbjct: 767 AAAPAAAPPPSPPSEEEEMAEDDAPSMDDEDRRDAE 802
Score = 34.2 bits (79), Expect = 1.2
Identities = 32/176 (18%), Positives = 36/176 (20%), Gaps = 16/176 (9%)
Query: 714 GVQGREGWRGKEGKDGRPGDAGVKGDKGAPGLAGRDGSPGEPGSKGDEGLPGLPGLQGPE 773
G + RP AP AG +P E + G+
Sbjct: 598 EGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHV 657
Query: 774 GDRGIYDPTLDKIEPGVTGPQGPIGPRGEPGEDGYNGKPGPPGLQGRTGEPGPPGIVGPI 833
D P G P P P G Q P
Sbjct: 658 AVPDASDGGDG--WPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQAD 715
Query: 834 GPKGI--------SIPGEAGVDGTPGPP------GQPGVYGPPGIPGLPGPKGQQG 875
P S P A D P PP G P P P P
Sbjct: 716 DPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPA 771
Score = 34.2 bits (79), Expect = 1.2
Identities = 36/233 (15%), Positives = 43/233 (18%), Gaps = 17/233 (7%)
Query: 1669 GTHGWPGEPGPRGPPGVKGEPGMDGDPGLSGNPGIPGDRGPRGGPGLSGAPGPKGEPGDI 1728
G P G P P P P P G PG
Sbjct: 589 GPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVA 648
Query: 1729 GLPENIIAATKGDFGEPGMTGLTGEKGWRGDVGWPGRNGTKGLPGAIGPQGEPGFPGYQG 1788
+ D + G GW G P P G Q
Sbjct: 649 APEHHPKHVAVPDASDGG-------DGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQP 701
Query: 1789 -PKGPVGMRGPPGI-PGLTDVMLAERGDPGRDGLPGRDGKPGLPGVKGAPGEYGIDGPPG 1846
P P A+ P P P P
Sbjct: 702 APAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGA----PAQ 757
Query: 1847 PPGAPGLSRKGNPGKPGYPGRIVEGLPGLPGLPGEDGKPGTPGVRGEPGEPGR 1899
PP P + P P E + +D R + E
Sbjct: 758 PPPPPAPAPAAAPAAAPPPSPPSEE----EEMAEDDAPSMDDEDRRDAEEVAM 806
Score = 33.0 bits (76), Expect = 2.4
Identities = 24/169 (14%), Positives = 29/169 (17%), Gaps = 6/169 (3%)
Query: 1842 DGPPGPPGAPGLSRKGNPGKPGYPGRIVEGLPGLPGLPGEDGKPGTPGVRGEPGEPGRPI 1901
P P P + P G G P + G
Sbjct: 619 AAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASD-GGDGWPAKAGGAA 677
Query: 1902 PGDGLPGRDGKPGLPGVKGAPGEYGIDGPPGPPGAPGLSRKGNPGKPGYP-GRIVEGLPG 1960
P P AP + PP P +
Sbjct: 678 PAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADD 737
Query: 1961 LPGLPGEDGKPGTPGGQSGGKGDRGSVGESIFFPGPPGTPGRPGSKGEP 2009
LP E P P G + P P E
Sbjct: 738 PVPLPPEPDDPPDPAGAPAQPPPPPAPAP----AAAPAAAPPPSPPSEE 782
Score = 32.7 bits (75), Expect = 3.3
Identities = 27/171 (15%), Positives = 33/171 (19%), Gaps = 10/171 (5%)
Query: 1339 GTPGPDGDRGKKGSRGPLGPRGQQGDPGPDGIPGRPGRVLHPGATGIPGDKGDIGPPGST 1398
G + GP + P P P GA P + PG
Sbjct: 589 GPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVA 648
Query: 1399 GFVGKPGSTGFVGKPGLQGLPGNKGEQGRRGTPGPVGQMGPPGAKGVIGDYGDAGYPGED 1458
P G G + G P P G A
Sbjct: 649 APEHHPKHVAVPDASD-----GGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAP 703
Query: 1459 GESAFSGLQGDKGEPGQTGPMGYPGLPGIPGEPGPLGDLGESIDGEPGYPG 1509
+A P P P D + EP P
Sbjct: 704 APAA-----TPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPP 749
Score = 31.9 bits (73), Expect = 6.1
Identities = 26/148 (17%), Positives = 31/148 (20%), Gaps = 21/148 (14%)
Query: 1885 PGTPGVRGEPGEPGRPIPGDGLPGRDGKPGLPGVKGAPGEYGIDGPPGPPGAPGLSRKGN 1944
G P P G P +P P AP P G AP +
Sbjct: 588 VGPAPGAAGGEGPPAP-ASSGPPEEAARPAAPAAPAAPAA---PAPAGAAAAPAEASAAP 643
Query: 1945 PGKPGYPGRIVEGLPGLPGLPGEDGKPGTPGGQSGGKGDRGSVGESIFFPGPPGTPGRPG 2004
P + + G DG P GG P P P
Sbjct: 644 APGVAAPEHHPKHVAVPDASDGGDGWPAKAGG-----------------AAPAAPPPAPA 686
Query: 2005 SKGEPGDEGPVGYRGIPGPDGRKGVAGP 2032
G + P P
Sbjct: 687 PAAPAAPAGAAPAQPAPAPAATPPAGQA 714
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex
non-fungal. The approx. 70 residue Med15 domain of the
ARC-Mediator co-activator is a three-helix bundle with
marked similarity to the KIX domain. The sterol
regulatory element binding protein (SREBP) family of
transcription activators use the ARC105 subunit to
activate target genes in the regulation of cholesterol
and fatty acid homeostasis. In addition, Med15 is a
critical transducer of gene activation signals that
control early metazoan development.
Length = 768
Score = 40.0 bits (93), Expect = 0.022
Identities = 56/340 (16%), Positives = 93/340 (27%), Gaps = 9/340 (2%)
Query: 788 PGVTGPQGPIGPRGEPGEDGYNGKPGPPGLQGRTGEPGPPGIVGPIGPKGISIPGEAGVD 847
G +GP G + G PG + P+G G+ + V
Sbjct: 80 TGQGTRGPQMGPMGPGPGRPMGQQMGGPGTASNLLQSLNVRGQMPMGAAGMGPHQMSRV- 138
Query: 848 GTPGPPGQPGVYGPPGIPGLPGPKGQQGVTIIGPPGQDGVPGQDGFKGVQGDRGDPGVQE 907
GT P GQ G P + + Q G + + + P
Sbjct: 139 GTMQPGGQAGGMMQQSSGQ-PQSQQPNQMGPQQGQAQGQAGGMNQGQQGPVGQQQPPQMG 197
Query: 908 SPAHVAH--QTLSFGPRTPGGPNRKAFTAMNPLQGPYGAPGDEGRDGLPGRNGVPGSKGD 965
P Q PGG ++ LQ D+ + + + +
Sbjct: 198 QPGMPGGGGQGQMQQQGQPGGQQQQNPQMQQQLQNQQQQQMDQQQGPADAQAQMGQQQQG 257
Query: 966 PATIPKEYLRGDAGYDGLPGEPGTPGDMGLKGEAGDTISSEVNMKGEKGYPGPPGDQGAP 1025
+ + + G +P + P + + G + M G G GP G P
Sbjct: 258 QGGMQPQ--QMQGGQMQVPMQQQPPQQQPQQSQLGMLPNQMQQMPG-GGQGGPGQPMGPP 314
Query: 1026 GFEGEPGIPGDKGIPGDSGPIGEPGISLQGPTGFKGRPGRPGDWGPKGAQGATGIQGLPG 1085
G + + G+ + +G+ +G Q
Sbjct: 315 PQRPGAVPQGGQAVQQGVMSAGQQQLKQMKLRNMRGQQQTQQQQQQQGGNHPAAHQQQMN 374
Query: 1086 LPGLPGA-IGPQGEPGFPGYQGPKGPVGM-RGPPGIPGAP 1123
G + G G QG G M +G PG+ +P
Sbjct: 375 QQVGQGGQMVALGYLNIQGNQGGLGANPMQQGQPGMMSSP 414
Score = 34.2 bits (78), Expect = 1.3
Identities = 25/132 (18%), Positives = 34/132 (25%), Gaps = 6/132 (4%)
Query: 100 NGIPGDPGAPGRMGEKGSRGPDGKMGPPGNKGLDGKHGTQGIEGPPGPPGAPGKLAPLSR 159
G G P MG R +MG PG Q + P + P
Sbjct: 82 QGTRGPQMGP--MGPGPGRPMGQQMGGPGTASNLL----QSLNVRGQMPMGAAGMGPHQM 135
Query: 160 VDIARAVGDQGLQGIEVGLRGDPGEGGINSKGTKGESGVYGIPGLQGPRGPMGERGPPGY 219
+ G+ G P N G + G+ + + P
Sbjct: 136 SRVGTMQPGGQAGGMMQQSSGQPQSQQPNQMGPQQGQAQGQAGGMNQGQQGPVGQQQPPQ 195
Query: 220 QGPYGERGPRGQ 231
G G G GQ
Sbjct: 196 MGQPGMPGGGGQ 207
>gnl|CDD|223029 PHA03264, PHA03264, envelope glycoprotein D; Provisional.
Length = 416
Score = 38.8 bits (90), Expect = 0.037
Identities = 32/106 (30%), Positives = 37/106 (34%), Gaps = 12/106 (11%)
Query: 1785 GYQGPKGPVGMRGPPGIPGLTDVMLAERGDPGRDGLPGRDGKPGLPGVKGAPGEYGIDGP 1844
GY+ P P G G P PG P DG PGR+ G + A
Sbjct: 263 GYEPPPAPSG--GSPAPPGDDRPEAKPEPGPVEDGAPGRETGGEGEGPEPA--------- 311
Query: 1845 PGPPGAPGLSRKGNPGKPGYPGRIVEGLPGLPGLPGEDGKPGTPGV 1890
G GA G K P +P EG P L + P TP V
Sbjct: 312 -GRDGAAGGEPKPGPPRPAPDADRPEGWPSLEAITFPPPTPATPAV 356
Score = 38.1 bits (88), Expect = 0.054
Identities = 26/87 (29%), Positives = 29/87 (33%), Gaps = 7/87 (8%)
Query: 1892 GEPGEPGRPIP---GDGLPGRDGKPGLPGVKGAPGEYGIDGPPGPPGAPGLSRKGNPGKP 1948
G P PG P + P DG PG G P G GA G K P +P
Sbjct: 273 GSPAPPGDDRPEAKPEPGPVEDGAPGRETGGEGEGP----EPAGRDGAAGGEPKPGPPRP 328
Query: 1949 GYPGRIVEGLPGLPGLPGEDGKPGTPG 1975
EG P L + P TP
Sbjct: 329 APDADRPEGWPSLEAITFPPPTPATPA 355
Score = 36.1 bits (83), Expect = 0.24
Identities = 22/99 (22%), Positives = 29/99 (29%), Gaps = 6/99 (6%)
Query: 786 IEPGVTG--PQGPIGPRGEPGEDGYNGKPGPPGLQGRTGEPGPPGIVGPIGPKGISIPGE 843
P +G P P R E + + G PG + GP G PG
Sbjct: 266 PPPAPSGGSPAPPGDDRPEAKPEPGPVEDGAPGRETGGEGEGPEPAGRDGAAGGEPKPGP 325
Query: 844 AG----VDGTPGPPGQPGVYGPPGIPGLPGPKGQQGVTI 878
D G P + PP P P + V +
Sbjct: 326 PRPAPDADRPEGWPSLEAITFPPPTPATPAVPRARPVIV 364
Score = 35.8 bits (82), Expect = 0.34
Identities = 31/101 (30%), Positives = 34/101 (33%), Gaps = 17/101 (16%)
Query: 1843 GPPGPPGAPGLSRKGNPG--KPGYPGRIVEGLPGLPGLPGEDGKPGTPGVRGEPGEPGRP 1900
G P PPG K PG + G PGR G P G DG G P
Sbjct: 273 GSPAPPGDDRPEAKPEPGPVEDGAPGRETGGEGEGPEPAGRDGAA-----------GGEP 321
Query: 1901 IPGDGLPGRDGKPGLPGVKGAPGEYGIDGPPGPPGAPGLSR 1941
PG P P +G P I PP P P + R
Sbjct: 322 KPGPPRPA----PDADRPEGWPSLEAITFPPPTPATPAVPR 358
>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional.
Length = 413
Score = 37.6 bits (87), Expect = 0.085
Identities = 36/183 (19%), Positives = 45/183 (24%), Gaps = 22/183 (12%)
Query: 1824 DGKPGLPGVKGAPGEYGIDGPPGPPGAPGLSRKGNPGKPGYPGRIVEGLPGLPGLPGEDG 1883
G P G + A GLS + P P
Sbjct: 89 QGGPSGSGSESVGSPTPSPSGSAEELASGLSPE-------------NTSGSSPESPASHS 135
Query: 1884 KPGTPGVRGEPGEPGRPIPGDGLPGRDGKPGLPGVKGAPGEYGIDGPPGPPGAPGLSRKG 1943
P +P P EP P + P + L D P P
Sbjct: 136 PPPSPPSHPGPHEPAPPESHNPSPNQQPSSFL-------QPSHEDSPEEPEPPTSEPEPD 188
Query: 1944 NPGKPGYPGRIVEGLPGLPGLPGEDGKPGTPGGQSGGKGDRGSVGESIFFPGPPGTPGRP 2003
+PG P P P P E G+P +P Q + E P P G P
Sbjct: 189 SPGPPQSETPTSSPPPQSP--PDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPEREGPP 246
Query: 2004 GSK 2006
Sbjct: 247 FPG 249
Score = 37.3 bits (86), Expect = 0.099
Identities = 30/156 (19%), Positives = 39/156 (25%), Gaps = 7/156 (4%)
Query: 714 GVQGREGWRGKEGKDGRPGDAGVKGDKGAPGLAGRDGSPGEPGSKGDEGL-PGLPGLQGP 772
+ G+ G G G G+ + SP + GL P P
Sbjct: 70 ESDTETAEESRHGEKEERGQGGPSGS-GSESVGSPTPSPSGSAEELASGLSPENTSGSSP 128
Query: 773 EGDRGIYDPTLDKIEPGVTGP-----QGPIGPRGEPGEDGYNGKPGPPGLQGRTGEPGPP 827
E P PG P P + + + P + T EP P
Sbjct: 129 ESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPD 188
Query: 828 GIVGPIGPKGISIPGEAGVDGTPGPPGQPGVYGPPG 863
P S P PG P P P
Sbjct: 189 SPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPS 224
Score = 36.9 bits (85), Expect = 0.14
Identities = 28/171 (16%), Positives = 35/171 (20%), Gaps = 5/171 (2%)
Query: 683 RGDRGPYGLKGERGVPGRPGIDGYPGIKGVKGVQGREGWRGKEGKDGRPGDAGVKGDKGA 742
G++ G G G P G A
Sbjct: 81 HGEKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSP 140
Query: 743 PGLAGRDGSPGEPGSKGDEGLPGLPGLQGPEGDRGIYDPTLDKIEPGVTGPQGPIGPRGE 802
P G P P S P + +P EP P P
Sbjct: 141 PSHPG-PHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPT 199
Query: 803 PGEDGYNGKPGPPGLQGRTGEPGPPGIVGPIGPKGISIPGEAGVDGTPGPP 853
+ PP G P P P + + E GPP
Sbjct: 200 SSPPPQS----PPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPEREGPP 246
Score = 33.8 bits (77), Expect = 1.2
Identities = 33/190 (17%), Positives = 41/190 (21%), Gaps = 23/190 (12%)
Query: 943 GAPGDEGRDGLPGRNGVP-------GSKGDPATIPKEYLRGDAGYDGLPGEPGTPGDMGL 995
G P G + + P S P A + P P PG
Sbjct: 90 GGPSGSGSESVGSPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEP 149
Query: 996 KGEAGDTISSEVNMKGEKGYPGPPGDQGAPGFEGEP----GIPGDKGIPGDSGPIGEPGI 1051
S + EP P P S P P
Sbjct: 150 APPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPD 209
Query: 1052 SLQGPTGFKGRPGRPGDWGPKGAQGATGIQGLPGLPGLPGAIGPQGEPGFPGYQGPKGPV 1111
PG P P+ A Q + P FPG++ V
Sbjct: 210 E----------PGEPQSPTPQQAPSPNTQQAVEHEDEPTEPERE--GPPFPGHRSHSYTV 257
Query: 1112 GMRGPPGIPG 1121
P PG
Sbjct: 258 VGWKPSTRPG 267
Score = 33.4 bits (76), Expect = 1.5
Identities = 21/131 (16%), Positives = 27/131 (20%), Gaps = 1/131 (0%)
Query: 1012 EKGYPGPPGDQGAPGFEGEPGIPGDKGIPGDSGPIGEPGISLQGPTGFKGRPGRPGDWGP 1071
E P G+ P + P P P P
Sbjct: 98 ESVGSPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNP 157
Query: 1072 KGAQGATGIQGLPGLPGLPGAIGPQGEPGFPGYQGPKGPVGMRGPPGIPGAPGFEGEPGI 1131
Q + P EP P+ PP P GEP
Sbjct: 158 SPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSP-PDEPGEPQS 216
Query: 1132 PGDKGIPGDSG 1142
P + P +
Sbjct: 217 PTPQQAPSPNT 227
Score = 32.6 bits (74), Expect = 3.3
Identities = 29/154 (18%), Positives = 36/154 (23%), Gaps = 11/154 (7%)
Query: 1022 QGAPGFEGEPGIPGDKGIPGDSGPIGEPGISLQGPTGFKGRPGRPGDWGPKGAQGATGIQ 1081
QG P G + P S G+S + +G P P P + +
Sbjct: 89 QGGPSGSGSESVGSPTPSPSGSAEELASGLSPENTSG--SSPESPASHSPPPSPPSHPGP 146
Query: 1082 GLPGLPGLPGAIGPQGEPGFPGYQGPKGPVGMRGPPGIPGAPGFEGEPGIPGDKGIPGDS 1141
P P Q F P P P E + P P S
Sbjct: 147 HEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEP-----EPDSPGPPQSETPTSS 201
Query: 1142 GPIGEPGISLQGPTGFKGRPGRPGDWGPKGAQGA 1175
P P G P P Q
Sbjct: 202 PPPQSPPDE----PGEPQSPTPQQAPSPNTQQAV 231
Score = 31.5 bits (71), Expect = 6.0
Identities = 28/151 (18%), Positives = 36/151 (23%), Gaps = 5/151 (3%)
Query: 1222 RPGSKGEPGDEGPVG--YRGIPGPDGRKGVSGPKGLPGLTGETGLPGLKGEEGDMLPGYP 1279
R G K E G GP G + P S + GL+ E E P
Sbjct: 80 RHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPENT--SGSSPESPASHSPP 137
Query: 1280 GTPGVPGIPGLKGIPGDKGSTGLDGEEGDMLPGYPGTPGVPGMP-GLKGITGDKGSTGLD 1338
+P P P + + P + +P P P
Sbjct: 138 PSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSET 197
Query: 1339 GTPGPDGDRGKKGSRGPLGPRGQQGDPGPDG 1369
T P P P QQ
Sbjct: 198 PTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQ 228
Score = 31.1 bits (70), Expect = 8.5
Identities = 21/169 (12%), Positives = 28/169 (16%), Gaps = 4/169 (2%)
Query: 660 EDTEQKPGNISYSFKGPKGMPGARGDRGPYGLKGERGVPGRPGIDGYPGIKGVKGVQGRE 719
E + G +G G+ P G+
Sbjct: 75 TAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPENTSGSSPESPASH 134
Query: 720 GWRGKEGKDGRPGDAGVKGDKGAPGLAGRDGSPGEPGSKGDEGLPGLPGLQGPEGDRGIY 779
P + E P+
Sbjct: 135 SPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQ 194
Query: 780 DPTLDKIEPGVTGPQGPIGPRGEPGEDGYNGKPGPPGLQGRTGEPGPPG 828
T P + P P GEP P P Q E P
Sbjct: 195 SETPTSSPPPQSPPDEP----GEPQSPTPQQAPSPNTQQAVEHEDEPTE 239
>gnl|CDD|219404 pfam07415, Herpes_LMP2, Gammaherpesvirus latent membrane protein
(LMP2) protein. This family consists of several
Gammaherpesvirus latent membrane protein (LMP2) proteins.
Epstein-Barr virus is a human Gammaherpesvirus that
infects and establishes latency in B lymphocytes in vivo.
The latent membrane protein 2 (LMP2) gene is expressed in
latently infected B cells and encodes two protein
isoforms, LMP2A and LMP2B, that are identical except for
an additional N-terminal 119 aa cytoplasmic domain which
is present in the LMP2A isoform. LMP2A is thought to play
a key role in either the establishment or the maintenance
of latency and/or the reactivation of productive
infection from the latent state. The significance of
LMP2B and its role in pathogenesis remain unclear.
Length = 489
Score = 35.2 bits (81), Expect = 0.49
Identities = 19/63 (30%), Positives = 21/63 (33%), Gaps = 6/63 (9%)
Query: 1965 PGEDGKPGTPGGQSGGKGDR-----GSVGESIFFPGPPGTPGRPGSKGEPGD-EGPVGYR 2018
P G P + GG G +GD S G S PGPP P G G R
Sbjct: 8 PLGAGGPRSHGGPDGDEGDSNPYYPSSFGSSWDRPGPPVPEDYDAPSHRPPPYGGSNGDR 67
Query: 2019 GIP 2021
Sbjct: 68 HGG 70
Score = 33.7 bits (77), Expect = 1.5
Identities = 25/99 (25%), Positives = 30/99 (30%), Gaps = 15/99 (15%)
Query: 1845 PGPPGAPGLSRKGNPGKPGYPGRIVEGLPGLPGLPGEDGKPGTPGVRGEPGEPGRPIPGD 1904
G P + G G G G P G + +PG P RP P
Sbjct: 11 AGGPRSHG-------GPDGDEGDSNPYYPSSFGSSWD--RPGPPVPEDYDAPSHRPPPYG 61
Query: 1905 GLPGRDGKPGLPGVKGAPGEY------GIDGPPGPPGAP 1937
G G P + P Y G G P PP +P
Sbjct: 62 GSNGDRHGGYQPLGQQDPSLYAGLGQNGGGGLPPPPYSP 100
Score = 32.5 bits (74), Expect = 3.3
Identities = 30/89 (33%), Positives = 33/89 (37%), Gaps = 11/89 (12%)
Query: 793 PQGPIGPRGEPGEDGYNG--KPGPPGLQGRTGE-PGPPGIVGPIGPKGISIP--GEAGVD 847
P G GPR G DG G P P G + + PGPP P P G G
Sbjct: 8 PLGAGGPRSHGGPDGDEGDSNPYYPSSFGSSWDRPGPPVPEDYDAPSHRPPPYGGSNGDR 67
Query: 848 GTPGPP--GQ-PGVY---GPPGIPGLPGP 870
P Q P +Y G G GLP P
Sbjct: 68 HGGYQPLGQQDPSLYAGLGQNGGGGLPPP 96
Score = 32.1 bits (73), Expect = 5.0
Identities = 27/109 (24%), Positives = 35/109 (32%), Gaps = 23/109 (21%)
Query: 1273 DMLPGYPGTPGVPGIPGLKGIPGDKGSTGLDGEEGDMLPGYPGTPGVPGMPGLKGITGDK 1332
+M P G P G P DG+EGD P YP + G G +
Sbjct: 5 EMQPLGAGGPRSHGGP--------------DGDEGDSNPYYPSSFGSS--WDRPGPPVPE 48
Query: 1333 GSTGLDGTPGP--DGDRGKKGSRGPLGPRGQQ-----GDPGPDGIPGRP 1374
P P + + G PLG + G G G+P P
Sbjct: 49 DYDAPSHRPPPYGGSNGDRHGGYQPLGQQDPSLYAGLGQNGGGGLPPPP 97
>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional.
Length = 943
Score = 35.4 bits (81), Expect = 0.51
Identities = 44/168 (26%), Positives = 50/168 (29%), Gaps = 18/168 (10%)
Query: 1789 PKGPVGMRGPPGIPGLTDVMLAERGDPGRDGLPGRDGKPGLPGVKGAPGEYGIDGPPGPP 1848
P+GP PP PG + E D P GKPG + G P
Sbjct: 511 PEGPEASGLPPKAPGDKEGEEGEHEDSKESDEPKEGGKPGETKEGEVGKKPGPAKEHKPS 570
Query: 1849 GAPGLSRKGN-PGKPGYPGRIVEG-------------LPGLPGLPGEDGKPGTPGVRGEP 1894
P LS+K P P +P E P P LP P +P P
Sbjct: 571 KIPTLSKKPEFPKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPESP 630
Query: 1895 GEPGRPIPGDGLPGRDGKPGLPGVKGAPGEYGIDGPPGPPGAPGLSRK 1942
P RP P P R P P P PP P K
Sbjct: 631 KSPKRPPP----PQRPSSPERPEGPKIIKSPKPPKSPKPPFDPKFKEK 674
>gnl|CDD|218673 pfam05642, Sporozoite_P67, Sporozoite P67 surface antigen. This
family consists of several Theileria P67 surface
antigens. A stage specific surface antigen of Theileria
parva, p67, is the basis for the development of an
anti-sporozoite vaccine for the control of East Coast
fever (ECF) in cattle. The antigen has been shown to
contain five distinct linear peptide sequences recognised
by sporozoite-neutralising murine monoclonal antibodies.
Length = 727
Score = 35.0 bits (80), Expect = 0.70
Identities = 50/211 (23%), Positives = 62/211 (29%), Gaps = 19/211 (9%)
Query: 1842 DGPPGPPGAPGLSRKGNPGKPGYPGRIVEGLPGLPGLPGEDGKPGTPGVRGEPGEPGRPI 1901
DG PG+S G + GL + G G PG +
Sbjct: 135 DGKGSKKTQPGVSTSSGSTTSGTDLNTKQSQTGLGASGSHAQQDPAVSQSGVVGVPGLGV 194
Query: 1902 PGDGLPGRDGKPGLPGVKGAPGEYGIDGPPGPPGAPGLSRKGNPGKPGYPGRIVEGLPGL 1961
PG G+PG G LPGV G G+ P G EG
Sbjct: 195 PGVGVPGGGGAGALPGV--GVGRAGV----SPGVGVGGLGGVPGVGILASNTSREGQTQD 248
Query: 1962 PGLPGEDGKPGTPGGQSGGKGDRGSVGESIFFPGPPGTPG-----RPGSKGEPGDEGPVG 2016
DG+ PG G VG+S P G P S G GP
Sbjct: 249 DQERDGDGRVIEPGVGLPGVR----VGDSTSSPSTTRPSGSTTTTTPASSGPSAPGGPGS 304
Query: 2017 YRGIPGPDGRKGVAGPKGLPG----LTGETG 2043
++GP PG +TG+ G
Sbjct: 305 SSRNAVTRSTDSISGPIPSPGAPRAITGQMG 335
>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and
modification].
Length = 2365
Score = 34.6 bits (79), Expect = 0.90
Identities = 37/132 (28%), Positives = 46/132 (34%), Gaps = 37/132 (28%)
Query: 2199 GIPGAPGLPAPPPPP----PPSRGFFLTFHSQTDMEPECPRYTSKLWSGYSLLHISGDNK 2254
+P PG P PPPPP PPS+ P P K S L I GD
Sbjct: 3 SLP--PGNPPPPPPPPGFEPPSQ----------PPPPPPPGVNVKKRSRKQ-LSIVGDIL 49
Query: 2255 AHTQDLGSPGSCLPRFSTMPFLFCSLTQTCDYASRGDNSYWLSSTEPMLKTMEPIPSADL 2314
H G+P L R S P + +T + L+ P+ P L
Sbjct: 50 GH---SGNPIYSL-RVSDKPVKLGNKAKT---------LHVLTLKAPI-------PPEHL 89
Query: 2315 KKYVSRCSVCES 2326
+K S CS S
Sbjct: 90 RKIQSPCSDMPS 101
>gnl|CDD|233507 TIGR01648, hnRNP-R-Q, heterogeneous nuclear ribonucleoprotein R, Q
family. Sequences in this subfamily include the human
heterogeneous nuclear ribonucleoproteins (hnRNP) R , Q
and APOBEC-1 complementation factor (aka APOBEC-1
stimulating protein). These proteins contain three RNA
recognition domains (rrm: pfam00076) and a somewhat
variable C-terminal domain.
Length = 578
Score = 34.2 bits (78), Expect = 0.98
Identities = 38/146 (26%), Positives = 49/146 (33%), Gaps = 7/146 (4%)
Query: 1835 APGEYGIDGPPGPPGAPGLSRKGNPGKPGYPGRIVEGLPGLPGLPGE--DGKPGTPGVRG 1892
A G G P G G + + Y + PG+ P GKPG G R
Sbjct: 380 AAGGRGY-PPYGYEAYYGDYYGYHDYRGKYEDKYYGYDPGMELTPMNPVRGKPGGRGGRP 438
Query: 1893 EPGEPGRPIPGDGLP--GRDGKPGLPGVKGAPGEYGIDGPPGPPGAPGLSRKGNPGKPGY 1950
P G P G+DG+ P Y P P G P S + G
Sbjct: 439 AIPPPRGRKNGAPPPAIGQDGRQLFLYKITIPAGYSQRPAPHPLGPPRGSAFVRGAR-GG 497
Query: 1951 PGRIVEGLPGLPGLPGEDGKPGTPGG 1976
P + + G G +G+ GT GG
Sbjct: 498 PAQYQQRGRGSRTSRG-NGRGGTAGG 522
>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 624
Score = 33.9 bits (77), Expect = 1.5
Identities = 29/133 (21%), Positives = 41/133 (30%), Gaps = 8/133 (6%)
Query: 1878 LPGEDGKPGTPGVRGEPGEPGRPIPGDGLPGRDGKPGLPGVKGAPGEYGIDGPPGPPGAP 1937
+P E +P G P P G PG G +G G+ P P
Sbjct: 366 MPVESLRPSGGGA-SAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATP 424
Query: 1938 GLSRKGNPGKP---GYPGRIVEGLP--GLPGLPGEDGKPGTPGGQSGGKGDRGSVGESIF 1992
S +P P P G+P P +P PG P + ++G+
Sbjct: 425 APSAAPSPRVPWDDAPPAPPRSGIPPRPAPRMPEASPVPGAPDSVASASDAPPTLGDPS- 483
Query: 1993 FPGPPGTPGRPGS 2005
TP P +
Sbjct: 484 -DTAEHTPSGPRT 495
>gnl|CDD|177663 PLN00026, PLN00026, aquaporin NIP; Provisional.
Length = 298
Score = 33.3 bits (76), Expect = 1.5
Identities = 15/34 (44%), Positives = 15/34 (44%)
Query: 1303 DGEEGDMLPGYPGTPGVPGMPGLKGITGDKGSTG 1336
D EE P P TPG PG P G D S G
Sbjct: 2 DNEEVPSAPSTPATPGTPGGPLFGGFRVDSLSYG 35
Score = 31.4 bits (71), Expect = 6.7
Identities = 14/33 (42%), Positives = 14/33 (42%)
Query: 1269 GEEGDMLPGYPGTPGVPGIPGLKGIPGDKGSTG 1301
EE P P TPG PG P G D S G
Sbjct: 3 NEEVPSAPSTPATPGTPGGPLFGGFRVDSLSYG 35
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 33.6 bits (77), Expect = 1.9
Identities = 51/269 (18%), Positives = 60/269 (22%), Gaps = 31/269 (11%)
Query: 1777 PQGEPGFPGYQGPKGPVGMRGPPGIPGLTDVMLAERGDPGRDGLPGRDG-----KPGLPG 1831
P G P PG + P + L A G P G D P P
Sbjct: 68 PTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPP 127
Query: 1832 VKGAPGEYGIDGPPGPPGAPGLSRK--------------GNPGKPGYPGRIVEGLPGLPG 1877
AP + P G PG P + + + P E P
Sbjct: 128 PSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPS 187
Query: 1878 LPGEDGKPGTPGVRGEPGEPGRPIP-GDGLPGRDGKPGLPGVKGAPGEYGIDGPPGPPGA 1936
P + P TP P P R P PG A G
Sbjct: 188 SPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGC 247
Query: 1937 PGLSRKGNPGKPGYPGRIVEGLPGLPGLPGEDGKPGTPGGQSGGKGDRGSVGESIFFPGP 1996
P P LP + G S G S S P
Sbjct: 248 GWGPENECPLPR----------PAPITLPTRIWEASGWNGPSSRPGPASSSS-SPRERSP 296
Query: 1997 PGTPGRPGSKGEPGDEGPVGYRGIPGPDG 2025
+P PGS P
Sbjct: 297 SPSPSSPGSGPAPSSPRASSSSSSSRESS 325
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like. Vta1 (VPS20-associated protein 1) is a
positive regulator of Vps4. Vps4 is an ATPase that is
required in the multivesicular body (MVB) sorting pathway
to dissociate the endosomal sorting complex required for
transport (ESCRT). Vta1 promotes correct assembly of Vps4
and stimulates its ATPase activity through its conserved
Vta1/SBP1/LIP5 region.
Length = 315
Score = 31.6 bits (72), Expect = 5.5
Identities = 32/140 (22%), Positives = 41/140 (29%), Gaps = 14/140 (10%)
Query: 1010 KGEKGYPGPPGDQGAPGFEGEPGIPGDKGIPGDSGP----IGEPGISLQGPTGFKGRPGR 1065
+GE PGPP D+ + + D+ P +P S G F P
Sbjct: 144 EGEDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPP-- 201
Query: 1066 PGDWGPKGAQGATGIQGLPGLPGLPGAIGPQGEPGFPG-YQGPKGPVGMRGPPGIPGAPG 1124
P + LP P + P P P P GP PP P
Sbjct: 202 EDPSSPSDSS-------LPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPL 254
Query: 1125 FEGEPGIPGDKGIPGDSGPI 1144
+P P P G I
Sbjct: 255 STAKPTPPSASATPAPIGGI 274
>gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional.
Length = 629
Score = 31.7 bits (72), Expect = 5.6
Identities = 35/124 (28%), Positives = 44/124 (35%), Gaps = 19/124 (15%)
Query: 128 GNKGLDGKHGTQGIEGPPGPPGAPGKLAPLSRVDIARAVGDQGLQGIEVGLRGD--PGEG 185
GN L H T IE P G PG L +R I + + + L GD P G
Sbjct: 520 GNIKLFASHST--IELPKGMPGE--VLQHFTRTRILN-------KPMNMQLLGDAQPHTG 568
Query: 186 GINSKGTKGESGVYGIPGLQGPRGPMGERGPPGYQGPYGERGPRGQIGFPGPRDCGPSHK 245
G G +G G +G R GER G G R + PR + +
Sbjct: 569 GERRGGGRGFGG----ERREGGRNFSGERREGGRGD--GRRFSGERREGRAPRRDDSTGR 622
Query: 246 GRLG 249
R G
Sbjct: 623 RRFG 626
>gnl|CDD|233508 TIGR01649, hnRNP-L_PTB, hnRNP-L/PTB/hephaestus splicing factor
family. Included in this family of heterogeneous
ribonucleoproteins are PTB (polypyrimidine tract binding
protein ) and hnRNP-L. These proteins contain four RNA
recognition motifs (rrm: pfam00067).
Length = 481
Score = 31.7 bits (72), Expect = 5.9
Identities = 24/86 (27%), Positives = 25/86 (29%), Gaps = 4/86 (4%)
Query: 1894 PGEPGRPIPGDGLPGRDGKPGL---PGVKGAPGEYGIDGPPGPPGAPGLSRKGNPGKPGY 1950
P PGR PG R +P L Y G P P A G R G P P
Sbjct: 191 PDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGD-RMGPPHGPPS 249
Query: 1951 PGRIVEGLPGLPGLPGEDGKPGTPGG 1976
R L G G G
Sbjct: 250 RYRPAYEAAPLAPAISSYGPAGGGPG 275
Score = 31.3 bits (71), Expect = 7.5
Identities = 23/112 (20%), Positives = 25/112 (22%), Gaps = 25/112 (22%)
Query: 760 DEGLPGLPGLQGPEGDRGIYDPTLDKIEPGVTGPQGPIGPRGEPGEDGY---NGKPGPPG 816
D P LPG + P D+ P DGY G P
Sbjct: 187 DYTNPDLPGRRDPGLDQTHRQ---------RQPALLGQHPSSYG-HDGYSSHGGPLAPLA 236
Query: 817 LQGRTGEPGPPGIVGPIGPKGISIPGEAGVDGTPGPPGQPGVYGPPGIPGLP 868
R G P P S A YGP G
Sbjct: 237 GGDRMGPPHGPP----------SRYRPAYEA--APLAPAISSYGPAGGGPGS 276
>gnl|CDD|111993 pfam03157, Glutenin_hmw, High molecular weight glutenin subunit.
Members of this family include high molecular weight
subunits of glutenin. This group of gluten proteins is
thought to be largely responsible for the elastic
properties of gluten, and hence, doughs. Indeed, glutenin
high molecular weight subunits are classified as
elastomeric proteins, because the glutenin network can
withstand significant deformations without breaking, and
return to the original conformation when the stress is
removed. Elastomeric proteins differ considerably in
amino acid sequence, but they are all polymers whose
subunits consist of elastomeric domains, composed of
repeated motifs, and non-elastic domains that mediate
cross-linking between the subunits. The elastomeric
domain motifs are all rich in glycine residues in
addition to other hydrophobic residues. High molecular
weight glutenin subunits have an extensive central
elastomeric domain, flanked by two terminal non-elastic
domains that form disulphide cross-links. The central
elastomeric domain is characterized by the following
three repeated motifs: PGQGQQ, GYYPTS[P/L]QQ, GQQ. It
possesses overlapping beta-turns within and between the
repeated motifs, and assumes a regular helical secondary
structure with a diameter of approx. 1.9 nm and a pitch
of approx. 1.5 nm.
Length = 779
Score = 32.0 bits (71), Expect = 6.2
Identities = 108/475 (22%), Positives = 157/475 (33%), Gaps = 10/475 (2%)
Query: 709 IKGVKGVQGREGWRGKEGKDGRPGDAGVKGDKGAPGLAGRDGSPGEPGSKGDEGLPGLPG 768
+G +G Q +G +G++ + G+ G +G + G G G+ +G +G
Sbjct: 160 AQGQQGQQIGQGQQGQQPEQGQQPGQGQQGQQPGQGQQPGQGQQGQQLGQGQQGYYPGQL 219
Query: 769 LQGPEGDRGIYDPTLDKIEPGVTGPQGPIGPRGEPGEDGYNGKPGPPGLQGRTGEPGPPG 828
Q +G G Y +L ++ G G + G+ + G Q G+ G
Sbjct: 220 QQSGQGQPGHYPTSLQQLGQGQQGHYLASPQQPGQGQQPGQLQQPAQGQQPEQGQQGQQP 279
Query: 829 IVGPIG--PKGISIPGEAGVDGTPGPPGQPGVYGPPGIPGLPGPKGQQGVTIIGPPGQDG 886
G G P PG+ P P QPG P P Q G GQ
Sbjct: 280 AQGQQGHQPAQGQQPGQGQPGHYPASPQQPGQGQPGHYPASSQQPTQSQEPGQGQQGQQV 339
Query: 887 VPGQDGFKGVQGDRGDPGVQESPAHVAHQTLSFGPRTPGGPNRKAFTAMNPLQGPYGAPG 946
GQ QG + G P H L GP PG Q
Sbjct: 340 GQGQQAQIPAQGQQPGQG---QPGHYPASPLQQGPGQPGHYLTSLQQLGQGQQIGQLQQS 396
Query: 947 DEGRDGLPGRNGVPGSKGDPATIPKEYLRGDAGYDGLPGEPGTPGDMGLKGEAGDTISSE 1006
G+ G G +G P + + G PG P + G+ +
Sbjct: 397 APGQKGQQPGQGQQPGQGQQGQQPGQGEQEQQPGQGQPGY--YPTSLQQPGQGQQPGQWQ 454
Query: 1007 VNMKGEKGYPGPPGDQGAPGFEG-EPGIPGDKGIPGDSGPIGEPGISLQGPTGFKGRPGR 1065
+G+ GY Q G G +P G G + +P G +G+ G+
Sbjct: 455 QPGQGQPGYYPTSLLQPGQGQPGHDPASLQQPGQGQQPGQLQQPAQGQPGQQLAQGQQGQ 514
Query: 1066 PGDWGPKGAQGATGIQGLPGLPGLPGAIGPQGEPGFPGYQGPKGPVGMRGPPGIPGAPGF 1125
+G Q A G QG G G QG+ G QG + G +G G
Sbjct: 515 QPAQVQQGQQPAQGQQGQQLGQGQQGQQPGQGQHPAQGEQGQQPGQGQQGQQPGQGQQPG 574
Query: 1126 EGEPGIPGDKGIPGDSGPIGEPGISLQGPTGFKGRPGRPGDWGPKGAQGATGIQG 1180
+G+P P +SG +PG Q + G+PG + Q G QG
Sbjct: 575 QGQPWYYPTS--PQESGQGQQPGQWQQPGQWQQPGQGQPGYYLTSPLQLGQGQQG 627
>gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional.
Length = 653
Score = 31.7 bits (72), Expect = 6.8
Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 828 GIVGPIGPKGISIPGEAGVDGTPG--PPGQPGVYGPPGIPGLPGPK 871
+ PI K G G PG P G PG GP G GP
Sbjct: 603 SVCNPIMTKMYQAAGGGMPGGMPGGMPGGMPGGAGPAGAGASSGPT 648
>gnl|CDD|227382 COG5049, XRN1, 5'-3' exonuclease [DNA replication, recombination, and
repair / Cell division and chromosome partitioning /
Translation].
Length = 953
Score = 31.4 bits (71), Expect = 7.2
Identities = 18/70 (25%), Positives = 23/70 (32%), Gaps = 4/70 (5%)
Query: 2467 NYNVNR-PSYDPNLNQAGYNPNLNRG--GYDPNLNRAGYNPNLNRG-GYDQSRGSYDPNQ 2522
YN PSY+ Q +N Y+ N LNR G+ N
Sbjct: 881 AYNKTFSPSYNSYPGQLVVESRVNGDERYYERNPPPIENEYPLNRKVGFLGDYNYGGENN 940
Query: 2523 YRGYGQNRTI 2532
GY NR +
Sbjct: 941 IDGYYDNRRL 950
>gnl|CDD|219358 pfam07271, Cytadhesin_P30, Cytadhesin P30/P32. This family consists
of several Mycoplasma species specific Cytadhesin P32 and
P30 proteins. P30 has been found to be membrane
associated and localised on the tip organelle. It is
thought that it is important in cytadherence and
virulence.
Length = 279
Score = 31.2 bits (70), Expect = 7.8
Identities = 32/131 (24%), Positives = 44/131 (33%), Gaps = 7/131 (5%)
Query: 1777 PQGEPGFPGYQGPKGPVGMRGPPGIPGLTDVMLAERGDPGRDGLPGRDGKPGLPGVKGAP 1836
PQ +P F + G P P + + P G+P +PG + G P
Sbjct: 155 PQVQPQFGPNPQQRINPQRFGFPMQPNMGMRPGFNQMPPHMPGMPPNQMRPGFNPMPGMP 214
Query: 1837 GEYGIDGPPGPPGAPGLSRKGNPGKPGYPGRIVEGLPGLPGLPGEDGKPGTPGVRGEPGE 1896
G P P ++R G +PG PG P P +PG +G
Sbjct: 215 PRPGF--NQNPNMMPNMNRPGFRPQPGGFNH-----PGTPMGPNMQQRPGFNPNQGMNPP 267
Query: 1897 PGRPIPGDGLP 1907
P P G P
Sbjct: 268 PHMAGPRAGFP 278
>gnl|CDD|216368 pfam01213, CAP_N, Adenylate cyclase associated (CAP) N terminal.
Length = 313
Score = 30.9 bits (70), Expect = 8.9
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 2202 GAPGLPAPPPPPPPSRGFFLTF 2223
AP P PPPPPPP ++
Sbjct: 228 SAPSAPPPPPPPPPPSVPTISN 249
>gnl|CDD|218745 pfam05783, DLIC, Dynein light intermediate chain (DLIC). This
family consists of several eukaryotic dynein light
intermediate chain proteins. The light intermediate
chains (LICs) of cytoplasmic dynein consist of multiple
isoforms, which undergo post-translational modification
to produce a large number of species. DLIC1 is known to
be involved in assembly, organisation, and function of
centrosomes and mitotic spindles when bound to
pericentrin. DLIC2 is a subunit of cytoplasmic dynein 2
that may play a role in maintaining Golgi organisation
by binding cytoplasmic dynein 2 to its Golgi-associated
cargo.
Length = 490
Score = 31.0 bits (70), Expect = 9.4
Identities = 23/97 (23%), Positives = 30/97 (30%), Gaps = 17/97 (17%)
Query: 770 QGPEGDRGIYDP----TLDKIEPGVTGPQGP--IGPRGEPGEDGYNGKPGPPG------- 816
Q RG+ P +GP+ + P + N KPG
Sbjct: 364 QPATPTRGVESPARSPGGSPRTTNRSGPRNVASVSPMTSVKKIDPNMKPGAASEGVLANF 423
Query: 817 ----LQGRTGEPGPPGIVGPIGPKGISIPGEAGVDGT 849
L +TG PG PG G G + G A G
Sbjct: 424 FNSLLSKKTGSPGSPGGGGSPAGTGTNTQGTAKKSGQ 460
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.312 0.145 0.470
Gapped
Lambda K H
0.267 0.0613 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 141,136,562
Number of extensions: 15066003
Number of successful extensions: 12547
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10767
Number of HSP's successfully gapped: 486
Length of query: 2564
Length of database: 10,937,602
Length adjustment: 113
Effective length of query: 2451
Effective length of database: 5,925,600
Effective search space: 14523645600
Effective search space used: 14523645600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 68 (30.2 bits)