RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17790
(2564 letters)
>d1t61a2 d.169.1.6 (A:115-225) Noncollagenous (NC1) domain of collagen
IV {Cow (Bos taurus) [TaxId: 9913]}
Length = 111
Score = 188 bits (479), Expect = 2e-56
Identities = 64/109 (58%), Positives = 86/109 (78%)
Query: 2330 AIAIHSQSVTIPSCPGGWEELWVGFSFLMHTDAGSGGGGQSLISPGSCLQDFRPTPFIQC 2389
+A+HSQ++ IP CP GW LW+G+SF+MHT AG+ G GQ+L SPGSCL++FR PFI+C
Sbjct: 3 VMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIEC 62
Query: 2390 HGVGSCNYYSTASSFWLATLDDRDQWRKPRPQTLKANDLKTRISRCAVC 2438
HG G+CNYY+ A SFWLAT++ + ++KP P TLKA +L+T +SRC VC
Sbjct: 63 HGRGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVC 111
Score = 149 bits (377), Expect = 2e-42
Identities = 43/109 (39%), Positives = 60/109 (55%), Gaps = 6/109 (5%)
Query: 2221 LTFHSQTDMEPECPRYTSKLWSGYS-LLHISGDNKAHTQDLGSPGSCLPRFSTMPFLFCS 2279
+ HSQT P+CP S LW GYS ++H S + Q L SPGSCL F + PF+ C
Sbjct: 4 MAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECH 63
Query: 2280 LTQTCDYASRGDNSYWLSSTEPMLKTMEPIP----SADLKKYVSRCSVC 2324
TC+Y + S+WL++ E +P P + +L+ +VSRC VC
Sbjct: 64 GRGTCNYYA-NAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVC 111
>d1t61c2 d.169.1.6 (C:115-225) Noncollagenous (NC1) domain of collagen
IV {Cow (Bos taurus) [TaxId: 9913]}
Length = 111
Score = 182 bits (463), Expect = 3e-54
Identities = 65/111 (58%), Positives = 83/111 (74%), Gaps = 1/111 (0%)
Query: 2331 IAIHSQSVTIPSCPGGWEELWVGFSFLMHTDAGSGGGGQSLISPGSCLQDFRPTPFIQCH 2390
IA+HSQ V+IP CP GW LW+G+SFLMHT AG GGGQSL+SPGSCL+DFR TPFI+C+
Sbjct: 1 IAVHSQDVSIPHCPAGWRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECN 60
Query: 2391 GV-GSCNYYSTASSFWLATLDDRDQWRKPRPQTLKANDLKTRISRCAVCLR 2440
G G+C+YY+ SFWL T+ ++ P TLKA ++T ISRC VC++
Sbjct: 61 GARGTCHYYANKYSFWLTTIPEQSFQGTPSADTLKAGLIRTHISRCQVCMK 111
Score = 143 bits (362), Expect = 2e-40
Identities = 37/110 (33%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 2221 LTFHSQTDMEPECPRYTSKLWSGYS-LLHISGDNKAHTQDLGSPGSCLPRFSTMPFLFC- 2278
+ HSQ P CP LW GYS L+H + ++ Q L SPGSCL F PF+ C
Sbjct: 1 IAVHSQDVSIPHCPAGWRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECN 60
Query: 2279 SLTQTCDYASRGDNSYWLSSTEPMLKTMEP----IPSADLKKYVSRCSVC 2324
TC Y S+WL++ P + + ++ ++SRC VC
Sbjct: 61 GARGTCHYY-ANKYSFWLTTIPEQSFQGTPSADTLKAGLIRTHISRCQVC 109
>d1t61a1 d.169.1.6 (A:6-114) Noncollagenous (NC1) domain of collagen
IV {Cow (Bos taurus) [TaxId: 9913]}
Length = 109
Score = 164 bits (418), Expect = 5e-48
Identities = 58/108 (53%), Positives = 81/108 (75%)
Query: 2219 FFLTFHSQTDMEPECPRYTSKLWSGYSLLHISGDNKAHTQDLGSPGSCLPRFSTMPFLFC 2278
F +T HSQT +P+CP T L+ GYSLL++ G+ +AH QDLG+ GSCL +FSTMPFLFC
Sbjct: 1 FLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFC 60
Query: 2279 SLTQTCDYASRGDNSYWLSSTEPMLKTMEPIPSADLKKYVSRCSVCES 2326
++ C++ASR D SYWLS+ EPM +M PI +++ ++SRC+VCE+
Sbjct: 61 NINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEA 108
Score = 151 bits (384), Expect = 2e-43
Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 2331 IAIHSQSVTIPSCPGGWEELWVGFSFLMHTDAGSGGGGQSLISPGSCLQDFRPTPFIQCH 2390
+ HSQ+ P CP G + L+ G+S L GQ L + GSCL+ F PF+ C+
Sbjct: 3 VTRHSQTTDDPQCPPGTKILYHGYSLLYVQ-GNERAHGQDLGTAGSCLRKFSTMPFLFCN 61
Query: 2391 GVGSCNYYS-TASSFWLATLDDRDQWRKPRPQTLKANDLKTRISRCAVC 2438
CN+ S S+WL+T + P + +++ ISRCAVC
Sbjct: 62 INNVCNFASRNDYSYWLSTPEPMPMSMAP----ITGENIRPFISRCAVC 106
>d1t61c1 d.169.1.6 (C:6-114) Noncollagenous (NC1) domain of collagen
IV {Cow (Bos taurus) [TaxId: 9913]}
Length = 109
Score = 161 bits (408), Expect = 1e-46
Identities = 65/111 (58%), Positives = 76/111 (68%), Gaps = 2/111 (1%)
Query: 2220 FLTFHSQTDMEPECPRYTSKLWSGYSLLHISGDNKAHTQDLGSPGSCLPRFSTMPFLFCS 2279
L HSQTD EP CP +KLWSGYSLL+ G KAH QDLG GSCL RFSTMPFL+C+
Sbjct: 1 LLVKHSQTDQEPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCN 60
Query: 2280 LTQTCDYASRGDNSYWLSSTEPMLKTMEPIPSADLKKYVSRCSVCESTTRA 2330
C YASR D SYWLS+T P+ M P+ D++ Y+SRCSVCE+ A
Sbjct: 61 PGDVCYYASRNDKSYWLSTTAPL--PMMPVAEEDIRPYISRCSVCEAPAVA 109
Score = 149 bits (377), Expect = 2e-42
Identities = 36/109 (33%), Positives = 48/109 (44%), Gaps = 8/109 (7%)
Query: 2331 IAIHSQSVTIPSCPGGWEELWVGFSFLMHTDAGSGGGGQSLISPGSCLQDFRPTPFIQCH 2390
+ HSQ+ P CP G +LW G+S L Q L GSCL F PF+ C+
Sbjct: 2 LVKHSQTDQEPMCPVGMNKLWSGYSLLYFE-GQEKAHNQDLGLAGSCLARFSTMPFLYCN 60
Query: 2391 GVGSCNYYS-TASSFWLATLDDRDQWRKPRPQTLKANDLKTRISRCAVC 2438
C Y S S+WL+T + D++ ISRC+VC
Sbjct: 61 PGDVCYYASRNDKSYWLSTTAPLPM------MPVAEEDIRPYISRCSVC 103
>d1xwma_ a.7.12.1 (A:) Phosphate transport system protein PhoU
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 212
Score = 35.6 bits (81), Expect = 0.049
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 2051 LPELKDKIVEMTEIVKESLSNAV 2073
L L +K++EM + + +L A+
Sbjct: 6 LASLHNKLIEMGRLTEVALQQAI 28
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.145 0.470
Gapped
Lambda K H
0.267 0.0637 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 10,780,460
Number of extensions: 590230
Number of successful extensions: 865
Number of sequences better than 10.0: 1
Number of HSP's gapped: 846
Number of HSP's successfully gapped: 17
Length of query: 2564
Length of database: 2,407,596
Length adjustment: 101
Effective length of query: 2463
Effective length of database: 1,020,866
Effective search space: 2514392958
Effective search space used: 2514392958
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (27.5 bits)