BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17792
         (116 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
           Proton:xylose Symporter Xyle Bound To D-Xylose
 pdb|4GBZ|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
           Proton:xylose Symporter Xyle Bound To D-Glucose
 pdb|4GC0|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
           Proton:xylose Symporter Xyle Bound To
           6-Bromo-6-Deoxy-D-Glucose
          Length = 491

 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 48/75 (64%)

Query: 29  LIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMD 88
           ++IG+++ + QQF GIN V YY+  +F++ G S   A   TI +G + +T T+++I  +D
Sbjct: 278 IVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVD 337

Query: 89  RMGRRTLHLYGLGGM 103
           + GR+ L + G  GM
Sbjct: 338 KFGRKPLQIIGALGM 352


>pdb|3LLO|A Chain A, Crystal Structure Of The Stas Domain Of Motor Protein
          Prestin (Anion Transporter Slc26a5)
          Length = 143

 Score = 28.9 bits (63), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 44 INAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTL 95
          INA  YY+ +   SS L  KT    +  I  V++  T ++   MD +G +TL
Sbjct: 36 INAPIYYANSDLYSSALKRKTGVNGSENIHTVILDFTQVN--FMDSVGVKTL 85


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.134    0.361 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,182,270
Number of Sequences: 62578
Number of extensions: 60153
Number of successful extensions: 122
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 121
Number of HSP's gapped (non-prelim): 3
length of query: 116
length of database: 14,973,337
effective HSP length: 79
effective length of query: 37
effective length of database: 10,029,675
effective search space: 371097975
effective search space used: 371097975
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)