Query psy17792
Match_columns 116
No_of_seqs 154 out of 1016
Neff 11.0
Searched_HMMs 46136
Date Fri Aug 16 23:13:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17792.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17792hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0569|consensus 99.7 3.9E-16 8.4E-21 104.4 11.3 103 12-114 254-356 (485)
2 KOG0254|consensus 99.3 1.5E-11 3.2E-16 83.8 10.2 97 16-114 284-380 (513)
3 TIGR01299 synapt_SV2 synaptic 99.1 1.4E-09 3E-14 77.0 10.7 69 44-112 183-251 (742)
4 TIGR02332 HpaX 4-hydroxyphenyl 99.1 1.6E-09 3.5E-14 72.1 10.0 88 26-113 6-93 (412)
5 TIGR00887 2A0109 phosphate:H+ 99.1 1.2E-09 2.6E-14 74.3 9.5 97 15-111 273-383 (502)
6 PLN00028 nitrate transmembrane 99.1 2.1E-09 4.5E-14 72.8 10.2 84 29-112 37-120 (476)
7 PRK15075 citrate-proton sympor 99.1 2E-09 4.4E-14 72.0 9.9 62 40-101 250-312 (434)
8 PRK15462 dipeptide/tripeptide 99.1 3.1E-09 6.6E-14 72.2 10.7 86 25-110 7-93 (493)
9 TIGR00883 2A0106 metabolite-pr 99.1 7.6E-09 1.6E-13 67.5 12.2 84 14-100 208-292 (394)
10 TIGR00891 2A0112 putative sial 99.1 3.7E-09 8.1E-14 69.4 10.5 84 28-111 12-95 (405)
11 PRK10642 proline/glycine betai 99.1 4.7E-09 1E-13 71.3 11.2 86 14-102 239-325 (490)
12 PRK11273 glpT sn-glycerol-3-ph 99.1 1.4E-09 3.1E-14 73.0 8.5 64 47-111 48-111 (452)
13 TIGR00879 SP MFS transporter, 99.1 8.7E-09 1.9E-13 68.7 12.2 85 27-111 283-367 (481)
14 PRK10207 dipeptide/tripeptide 99.1 3.9E-09 8.5E-14 71.8 10.4 88 26-113 13-101 (489)
15 PRK12307 putative sialic acid 99.0 4.9E-09 1.1E-13 69.7 10.3 84 29-112 19-102 (426)
16 PRK05122 major facilitator sup 99.0 3.9E-09 8.4E-14 69.7 9.8 80 26-106 14-94 (399)
17 PRK10054 putative transporter; 99.0 6.3E-09 1.4E-13 68.9 10.4 72 40-111 19-91 (395)
18 PRK03893 putative sialic acid 99.0 5.2E-09 1.1E-13 70.8 10.2 85 28-112 20-104 (496)
19 TIGR00895 2A0115 benzoate tran 99.0 5.2E-09 1.1E-13 68.5 9.9 81 31-111 20-100 (398)
20 PRK10504 putative transporter; 99.0 5.6E-09 1.2E-13 70.4 10.0 79 33-111 15-93 (471)
21 PRK15034 nitrate/nitrite trans 99.0 4.3E-09 9.4E-14 71.0 9.2 86 16-107 245-330 (462)
22 PRK10406 alpha-ketoglutarate t 99.0 1.8E-08 4E-13 67.4 11.9 84 14-101 233-317 (432)
23 PRK09952 shikimate transporter 99.0 2.1E-08 4.5E-13 67.3 11.8 58 47-104 270-327 (438)
24 PRK11551 putative 3-hydroxyphe 99.0 7.6E-09 1.6E-13 68.4 9.7 72 40-111 27-98 (406)
25 PRK11663 regulatory protein Uh 99.0 6.3E-09 1.4E-13 69.7 9.2 87 26-112 21-107 (434)
26 PRK03633 putative MFS family t 99.0 9.9E-09 2.1E-13 67.5 9.8 78 35-112 13-90 (381)
27 PRK03699 putative transporter; 99.0 1.1E-08 2.5E-13 67.5 10.0 83 29-111 8-90 (394)
28 TIGR00710 efflux_Bcr_CflA drug 99.0 1.1E-08 2.4E-13 66.9 9.5 71 42-112 19-89 (385)
29 PRK10077 xylE D-xylose transpo 99.0 3.4E-08 7.3E-13 66.6 12.1 77 35-111 278-354 (479)
30 PRK03545 putative arabinose tr 99.0 1.5E-08 3.2E-13 66.9 10.0 67 46-112 27-93 (390)
31 PRK09556 uhpT sugar phosphate 99.0 6.8E-09 1.5E-13 70.1 8.5 65 47-111 48-112 (467)
32 PRK10473 multidrug efflux syst 98.9 1.3E-08 2.9E-13 67.0 9.6 82 30-111 5-86 (392)
33 PRK09556 uhpT sugar phosphate 98.9 1.4E-08 3E-13 68.6 9.7 55 45-99 275-330 (467)
34 PRK14995 methyl viologen resis 98.9 1.8E-08 3.8E-13 68.6 9.9 85 29-113 7-91 (495)
35 TIGR00890 2A0111 Oxalate/Forma 98.9 4E-09 8.7E-14 68.5 6.4 69 45-113 20-88 (377)
36 PRK11652 emrD multidrug resist 98.9 1.7E-08 3.6E-13 66.6 9.4 65 46-110 26-90 (394)
37 PF12832 MFS_1_like: MFS_1 lik 98.9 1.9E-08 4.1E-13 52.0 7.7 65 37-101 9-73 (77)
38 PRK12382 putative transporter; 98.9 1.7E-08 3.8E-13 66.5 9.3 62 45-106 32-94 (392)
39 TIGR00711 efflux_EmrB drug res 98.9 1.5E-08 3.2E-13 68.4 9.1 79 33-111 7-85 (485)
40 TIGR00886 2A0108 nitrite extru 98.9 1.7E-08 3.8E-13 65.7 9.1 76 37-112 10-86 (366)
41 PRK10213 nepI ribonucleoside t 98.9 2.4E-08 5.1E-13 66.2 9.8 86 26-112 19-104 (394)
42 TIGR00896 CynX cyanate transpo 98.9 1.7E-08 3.7E-13 65.7 9.0 62 45-106 214-276 (355)
43 TIGR00890 2A0111 Oxalate/Forma 98.9 1.4E-08 3.1E-13 65.9 8.6 58 51-108 228-285 (377)
44 TIGR00897 2A0118 polyol permea 98.9 1.9E-08 4.2E-13 66.7 9.3 56 42-97 236-291 (402)
45 TIGR00924 yjdL_sub1_fam amino 98.9 2.5E-08 5.4E-13 67.7 9.9 83 29-112 12-98 (475)
46 COG2223 NarK Nitrate/nitrite t 98.9 2.7E-08 5.9E-13 65.7 9.5 93 15-112 210-303 (417)
47 PRK09874 drug efflux system pr 98.9 4.4E-08 9.4E-13 64.7 10.7 76 36-111 22-102 (408)
48 PRK10406 alpha-ketoglutarate t 98.9 3.7E-08 8.1E-13 65.9 10.5 80 33-112 27-112 (432)
49 PRK12307 putative sialic acid 98.9 4.1E-08 8.9E-13 65.3 10.5 90 15-106 220-309 (426)
50 TIGR00901 2A0125 AmpG-related 98.9 3.3E-08 7.1E-13 64.4 9.7 93 15-109 198-291 (356)
51 PRK10133 L-fucose transporter; 98.9 4.8E-08 1E-12 65.7 10.7 67 44-110 42-108 (438)
52 PRK11551 putative 3-hydroxyphe 98.9 4.7E-08 1E-12 64.7 10.4 64 43-106 235-298 (406)
53 PRK09584 tppB putative tripept 98.9 5.7E-08 1.2E-12 66.4 10.5 93 17-112 14-107 (500)
54 TIGR00891 2A0112 putative sial 98.9 7.6E-08 1.6E-12 63.3 10.7 56 48-103 259-314 (405)
55 TIGR00879 SP MFS transporter, 98.9 1.5E-08 3.3E-13 67.6 7.4 63 48-110 48-118 (481)
56 PRK15402 multidrug efflux syst 98.9 4.4E-08 9.5E-13 64.9 9.4 67 45-111 30-96 (406)
57 PRK10091 MFS transport protein 98.9 4.1E-08 8.8E-13 64.7 9.2 69 45-113 20-88 (382)
58 PRK09528 lacY galactoside perm 98.8 5.4E-08 1.2E-12 64.8 9.8 56 47-102 30-85 (420)
59 TIGR00892 2A0113 monocarboxyla 98.8 5.8E-08 1.2E-12 65.5 9.9 68 45-112 36-103 (455)
60 PRK10489 enterobactin exporter 98.8 1.7E-08 3.7E-13 67.1 7.3 63 44-106 33-95 (417)
61 TIGR00897 2A0118 polyol permea 98.8 5.4E-08 1.2E-12 64.6 9.4 61 48-108 33-93 (402)
62 COG2814 AraJ Arabinose efflux 98.8 5.7E-08 1.2E-12 64.2 9.2 90 16-110 204-293 (394)
63 PF00083 Sugar_tr: Sugar (and 98.8 1.7E-11 3.7E-16 81.9 -7.3 95 15-111 240-334 (451)
64 PRK09705 cynX putative cyanate 98.8 4.6E-08 9.9E-13 64.8 8.8 65 43-107 220-284 (393)
65 TIGR00881 2A0104 phosphoglycer 98.8 2E-08 4.4E-13 65.2 6.9 68 45-112 12-79 (379)
66 PRK15075 citrate-proton sympor 98.8 8.2E-08 1.8E-12 64.3 9.8 86 28-113 15-106 (434)
67 TIGR00882 2A0105 oligosacchari 98.8 1.2E-07 2.7E-12 62.7 10.2 62 42-103 16-78 (396)
68 PRK09705 cynX putative cyanate 98.8 6.6E-08 1.4E-12 64.0 8.4 69 45-113 26-94 (393)
69 PRK15034 nitrate/nitrite trans 98.8 2.5E-07 5.4E-12 62.6 11.1 85 28-112 34-119 (462)
70 PF07690 MFS_1: Major Facilita 98.8 1.2E-07 2.6E-12 61.2 9.4 67 45-111 13-80 (352)
71 COG2271 UhpC Sugar phosphate p 98.8 1.2E-07 2.7E-12 62.8 9.3 65 33-98 258-325 (448)
72 PRK10642 proline/glycine betai 98.8 1.7E-07 3.6E-12 63.8 10.3 85 29-113 17-107 (490)
73 TIGR00895 2A0115 benzoate tran 98.8 1.8E-07 3.8E-12 61.3 10.1 59 40-98 262-320 (398)
74 cd06174 MFS The Major Facilita 98.8 1.2E-07 2.6E-12 60.9 9.1 73 40-112 11-83 (352)
75 TIGR01299 synapt_SV2 synaptic 98.8 2.1E-07 4.5E-12 66.3 10.8 45 68-112 600-644 (742)
76 PRK10077 xylE D-xylose transpo 98.8 1.3E-07 2.8E-12 63.8 9.6 52 59-110 51-102 (479)
77 PRK03633 putative MFS family t 98.8 1.2E-07 2.5E-12 62.5 9.0 58 48-105 220-277 (381)
78 TIGR00900 2A0121 H+ Antiporter 98.8 1.1E-07 2.4E-12 61.5 8.9 66 45-110 16-81 (365)
79 PRK11043 putative transporter; 98.7 1.8E-07 3.9E-12 61.9 9.7 62 50-111 28-89 (401)
80 TIGR00886 2A0108 nitrite extru 98.7 1E-07 2.2E-12 62.1 8.3 60 46-105 243-303 (366)
81 TIGR00902 2A0127 phenyl propri 98.7 1.4E-07 3.1E-12 62.2 9.1 92 15-111 197-288 (382)
82 TIGR00885 fucP L-fucose:H+ sym 98.7 2.4E-07 5.3E-12 61.9 10.1 66 45-110 20-85 (410)
83 PRK15403 multidrug efflux syst 98.7 1.4E-07 3.1E-12 62.9 9.0 66 47-112 35-100 (413)
84 PRK03699 putative transporter; 98.7 1.5E-07 3.2E-12 62.3 9.0 63 44-106 221-284 (394)
85 TIGR00710 efflux_Bcr_CflA drug 98.7 1.2E-07 2.7E-12 62.0 8.6 61 46-106 224-285 (385)
86 TIGR00712 glpT glycerol-3-phos 98.7 5.3E-08 1.1E-12 65.3 6.7 82 28-110 27-108 (438)
87 TIGR00893 2A0114 d-galactonate 98.7 8.8E-08 1.9E-12 62.4 7.4 70 43-112 9-78 (399)
88 PRK11128 putative 3-phenylprop 98.7 2.3E-07 5E-12 61.2 9.3 91 14-109 196-286 (382)
89 PRK11195 lysophospholipid tran 98.7 2.2E-07 4.9E-12 61.6 9.3 61 49-109 24-84 (393)
90 PRK10504 putative transporter; 98.7 4.9E-07 1.1E-11 61.1 10.8 65 44-108 277-342 (471)
91 PF13347 MFS_2: MFS/sugar tran 98.7 1.9E-07 4E-12 62.5 8.7 61 51-112 248-309 (428)
92 TIGR00711 efflux_EmrB drug res 98.7 6.8E-07 1.5E-11 60.4 11.2 66 45-110 272-338 (485)
93 PRK03545 putative arabinose tr 98.7 3.7E-07 8E-12 60.3 9.7 52 47-98 225-276 (390)
94 PRK10133 L-fucose transporter; 98.7 4.3E-07 9.3E-12 61.2 10.1 59 48-106 279-338 (438)
95 PRK09528 lacY galactoside perm 98.7 2.5E-07 5.3E-12 61.7 8.8 52 59-110 258-309 (420)
96 PRK11102 bicyclomycin/multidru 98.7 2.7E-07 6E-12 60.4 8.8 50 53-102 220-269 (377)
97 TIGR00900 2A0121 H+ Antiporter 98.7 5.9E-07 1.3E-11 58.2 10.2 60 49-108 232-292 (365)
98 COG2814 AraJ Arabinose efflux 98.7 5.9E-07 1.3E-11 59.5 10.0 89 26-115 12-100 (394)
99 PRK11646 multidrug resistance 98.7 5.6E-07 1.2E-11 59.9 9.9 76 36-111 19-94 (400)
100 PRK10473 multidrug efflux syst 98.6 4.2E-07 9.2E-12 60.0 9.1 60 50-109 225-285 (392)
101 PRK11043 putative transporter; 98.6 3.6E-07 7.9E-12 60.5 8.8 82 14-100 194-275 (401)
102 PRK11010 ampG muropeptide tran 98.6 5E-07 1.1E-11 61.7 9.5 56 47-102 242-298 (491)
103 PRK09952 shikimate transporter 98.6 6.3E-07 1.4E-11 60.3 9.7 85 29-113 23-114 (438)
104 TIGR00903 2A0129 major facilit 98.6 2.1E-07 4.5E-12 61.4 7.2 59 45-103 8-66 (368)
105 TIGR00896 CynX cyanate transpo 98.6 7.7E-08 1.7E-12 62.7 5.2 70 38-107 10-79 (355)
106 TIGR00899 2A0120 sugar efflux 98.6 7.6E-07 1.7E-11 58.1 9.8 56 50-105 222-277 (375)
107 TIGR00893 2A0114 d-galactonate 98.6 5.9E-07 1.3E-11 58.5 9.2 50 45-94 232-282 (399)
108 PRK11902 ampG muropeptide tran 98.6 5.9E-07 1.3E-11 59.6 9.3 56 49-104 231-287 (402)
109 PRK11663 regulatory protein Uh 98.6 6.2E-07 1.4E-11 60.2 9.3 46 45-90 260-306 (434)
110 PRK10091 MFS transport protein 98.6 5.8E-07 1.3E-11 59.3 8.9 60 48-107 220-279 (382)
111 TIGR01301 GPH_sucrose GPH fami 98.6 6.3E-07 1.4E-11 61.0 8.9 82 28-110 5-91 (477)
112 TIGR02332 HpaX 4-hydroxyphenyl 98.6 8E-07 1.7E-11 59.3 9.4 63 33-95 247-311 (412)
113 COG3104 PTR2 Dipeptide/tripept 98.6 7.6E-07 1.7E-11 60.2 9.1 88 26-113 20-112 (498)
114 PLN00028 nitrate transmembrane 98.6 7.9E-07 1.7E-11 60.5 9.3 44 50-93 274-318 (476)
115 PTZ00207 hypothetical protein; 98.6 1.1E-06 2.4E-11 61.2 10.0 68 45-113 44-111 (591)
116 TIGR00898 2A0119 cation transp 98.6 1.2E-06 2.6E-11 59.7 10.1 89 14-110 314-402 (505)
117 PRK15011 sugar efflux transpor 98.6 1E-06 2.2E-11 58.4 9.3 56 47-102 235-291 (393)
118 TIGR02718 sider_RhtX_FptX side 98.6 7E-07 1.5E-11 59.0 8.5 84 15-103 200-284 (390)
119 PRK11102 bicyclomycin/multidru 98.6 4E-07 8.7E-12 59.6 7.2 66 47-112 10-75 (377)
120 KOG0253|consensus 98.6 1.1E-06 2.3E-11 58.1 8.9 96 15-112 315-430 (528)
121 TIGR00882 2A0105 oligosacchari 98.5 9.7E-07 2.1E-11 58.4 8.8 51 59-109 250-300 (396)
122 PRK11273 glpT sn-glycerol-3-ph 98.5 1.4E-06 3E-11 58.8 9.5 50 45-94 270-322 (452)
123 PRK14995 methyl viologen resis 98.5 3E-06 6.4E-11 57.9 11.2 63 46-108 277-340 (495)
124 TIGR00792 gph sugar (Glycoside 98.5 3E-07 6.5E-12 61.4 6.3 47 62-108 256-302 (437)
125 TIGR01272 gluP glucose/galacto 98.5 1.4E-06 3E-11 56.3 9.1 62 46-107 158-222 (310)
126 TIGR00899 2A0120 sugar efflux 98.5 1.3E-06 2.7E-11 57.1 8.7 62 45-106 14-77 (375)
127 PRK03893 putative sialic acid 98.5 2.4E-06 5.3E-11 58.0 10.2 59 47-105 294-353 (496)
128 PRK15402 multidrug efflux syst 98.5 1.8E-06 4E-11 57.3 9.2 59 50-108 237-296 (406)
129 PF06609 TRI12: Fungal trichot 98.5 1.1E-06 2.3E-11 61.2 8.2 64 49-113 65-128 (599)
130 TIGR00805 oat sodium-independe 98.5 2.9E-07 6.4E-12 64.6 5.4 88 26-113 31-118 (633)
131 COG2271 UhpC Sugar phosphate p 98.5 8.6E-07 1.9E-11 59.0 7.1 68 47-114 48-115 (448)
132 TIGR00712 glpT glycerol-3-phos 98.5 1.7E-06 3.8E-11 58.1 8.6 50 45-94 268-318 (438)
133 KOG2615|consensus 98.5 8.2E-07 1.8E-11 58.5 6.7 52 64-115 69-120 (451)
134 TIGR00889 2A0110 nucleoside tr 98.5 4.3E-06 9.3E-11 56.1 10.3 61 47-107 22-83 (418)
135 TIGR00887 2A0109 phosphate:H+ 98.5 3.5E-06 7.6E-11 57.6 10.0 51 62-112 55-105 (502)
136 TIGR00889 2A0110 nucleoside tr 98.5 2.3E-06 5E-11 57.3 8.8 61 50-110 230-298 (418)
137 PRK10429 melibiose:sodium symp 98.4 1E-06 2.3E-11 59.8 6.8 55 50-104 253-307 (473)
138 cd06174 MFS The Major Facilita 98.4 5.7E-06 1.2E-10 53.2 9.8 71 41-111 188-260 (352)
139 TIGR00898 2A0119 cation transp 98.4 3.1E-07 6.7E-12 62.5 3.8 63 50-112 111-176 (505)
140 PF07690 MFS_1: Major Facilita 98.4 2.1E-06 4.5E-11 55.4 7.4 62 45-106 223-286 (352)
141 TIGR00806 rfc RFC reduced fola 98.4 1.7E-05 3.6E-10 54.1 11.1 86 26-113 26-112 (511)
142 TIGR00881 2A0104 phosphoglycer 98.4 4E-06 8.7E-11 54.5 8.1 45 47-91 235-280 (379)
143 KOG2533|consensus 98.4 3.8E-06 8.2E-11 57.5 8.0 85 15-104 265-354 (495)
144 KOG2532|consensus 98.3 3.5E-06 7.5E-11 57.3 7.7 75 13-92 248-323 (466)
145 PRK09874 drug efflux system pr 98.3 9.4E-06 2E-10 53.7 9.5 40 68-107 263-302 (408)
146 TIGR00894 2A0114euk Na(+)-depe 98.3 1.1E-05 2.4E-10 54.6 9.8 74 15-93 253-327 (465)
147 PF05977 MFS_3: Transmembrane 98.3 1E-05 2.2E-10 55.8 9.7 89 18-111 5-93 (524)
148 PRK15011 sugar efflux transpor 98.3 1.2E-05 2.7E-10 53.3 9.8 54 48-102 36-91 (393)
149 PRK10489 enterobactin exporter 98.3 6.3E-06 1.4E-10 55.0 8.3 60 48-107 243-303 (417)
150 KOG0252|consensus 98.3 5.1E-06 1.1E-10 56.1 7.2 53 60-112 81-133 (538)
151 PRK10213 nepI ribonucleoside t 98.3 1.7E-05 3.7E-10 52.8 9.8 50 47-96 236-285 (394)
152 PF06779 DUF1228: Protein of u 98.3 2.1E-05 4.5E-10 41.3 8.0 66 48-113 12-77 (85)
153 COG2223 NarK Nitrate/nitrite t 98.3 2.1E-05 4.6E-10 52.4 9.8 81 33-113 19-99 (417)
154 PRK08633 2-acyl-glycerophospho 98.3 1.4E-05 3.1E-10 59.3 9.9 56 50-105 32-89 (1146)
155 PF11700 ATG22: Vacuole efflux 98.3 2E-05 4.3E-10 53.9 9.8 71 33-103 286-359 (477)
156 TIGR00885 fucP L-fucose:H+ sym 98.3 1.8E-05 3.9E-10 53.0 9.5 44 66-109 272-315 (410)
157 PRK08633 2-acyl-glycerophospho 98.2 1.3E-05 2.7E-10 59.6 9.0 63 47-109 252-315 (1146)
158 PF05631 DUF791: Protein of un 98.2 1.2E-05 2.5E-10 52.7 7.6 60 50-109 56-115 (354)
159 COG2211 MelB Na+/melibiose sym 98.2 6.4E-06 1.4E-10 55.8 6.6 53 58-110 267-319 (467)
160 KOG0254|consensus 98.2 1.1E-05 2.3E-10 55.5 7.7 49 66-114 92-140 (513)
161 PRK09669 putative symporter Ya 98.2 7E-06 1.5E-10 55.3 6.5 38 67-104 268-305 (444)
162 TIGR00894 2A0114euk Na(+)-depe 98.2 7.4E-06 1.6E-10 55.4 6.6 54 57-110 70-123 (465)
163 COG2270 Permeases of the major 98.2 2.3E-05 4.9E-10 52.4 8.5 72 36-107 260-332 (438)
164 PRK09848 glucuronide transport 98.2 6.9E-06 1.5E-10 55.4 6.3 61 48-108 248-309 (448)
165 PRK11462 putative transporter; 98.2 2.9E-05 6.4E-10 52.8 9.2 52 45-100 249-300 (460)
166 KOG0255|consensus 98.2 4E-06 8.7E-11 57.5 4.7 59 57-115 112-170 (521)
167 TIGR00792 gph sugar (Glycoside 98.2 7.4E-06 1.6E-10 54.8 5.9 63 47-109 19-86 (437)
168 COG2807 CynX Cyanate permease 98.1 5.6E-05 1.2E-09 49.8 9.5 85 18-107 203-288 (395)
169 TIGR00805 oat sodium-independe 98.1 3.7E-05 8.1E-10 54.3 9.4 65 43-107 345-413 (633)
170 PF03825 Nuc_H_symport: Nucleo 98.1 4.2E-05 9E-10 51.3 9.1 70 37-106 11-81 (400)
171 TIGR00902 2A0127 phenyl propri 98.1 5.5E-05 1.2E-09 50.1 9.4 58 37-94 13-70 (382)
172 KOG1330|consensus 98.1 2.7E-05 5.7E-10 52.7 7.5 69 45-113 50-118 (493)
173 TIGR00883 2A0106 metabolite-pr 98.1 3.3E-05 7.1E-10 50.5 7.6 38 75-112 47-84 (394)
174 COG0738 FucP Fucose permease [ 98.1 5.7E-05 1.2E-09 50.3 8.6 66 45-110 30-95 (422)
175 PF01306 LacY_symp: LacY proto 98.0 4.5E-05 9.8E-10 51.2 7.7 54 45-98 24-78 (412)
176 PRK11902 ampG muropeptide tran 98.0 9.3E-05 2E-09 49.3 9.3 73 37-111 8-86 (402)
177 PRK12382 putative transporter; 98.0 8.8E-05 1.9E-09 49.1 9.0 62 46-109 234-295 (392)
178 PRK05122 major facilitator sup 98.0 9.1E-05 2E-09 49.1 8.9 59 47-107 235-293 (399)
179 PRK06814 acylglycerophosphoeth 98.0 0.00013 2.7E-09 54.6 10.0 33 65-97 54-86 (1140)
180 PRK10429 melibiose:sodium symp 98.0 3.5E-05 7.5E-10 52.5 6.5 60 48-107 27-91 (473)
181 TIGR02718 sider_RhtX_FptX side 98.0 0.00012 2.6E-09 48.5 8.8 68 33-100 6-76 (390)
182 PF06813 Nodulin-like: Nodulin 97.9 0.00016 3.4E-09 45.6 8.6 67 44-111 18-84 (250)
183 PF05977 MFS_3: Transmembrane 97.9 0.00012 2.5E-09 50.8 8.7 64 50-113 240-304 (524)
184 PRK11128 putative 3-phenylprop 97.9 0.00017 3.6E-09 47.7 8.6 52 42-93 18-69 (382)
185 PRK11652 emrD multidrug resist 97.9 9.8E-05 2.1E-09 48.9 7.4 45 50-94 229-274 (394)
186 TIGR00903 2A0129 major facilit 97.9 0.00031 6.8E-09 46.5 9.7 70 15-93 184-253 (368)
187 PRK09669 putative symporter Ya 97.9 4.9E-05 1.1E-09 51.3 5.7 60 48-107 30-94 (444)
188 PRK11195 lysophospholipid tran 97.8 0.00037 8E-09 46.4 9.6 47 54-100 232-278 (393)
189 KOG0252|consensus 97.8 2.7E-05 5.9E-10 52.7 4.0 88 27-115 304-400 (538)
190 PRK10054 putative transporter; 97.8 0.0001 2.2E-09 49.1 6.6 49 59-107 240-288 (395)
191 TIGR00901 2A0125 AmpG-related 97.8 0.00019 4.1E-09 46.9 7.2 60 46-107 6-71 (356)
192 PRK09848 glucuronide transport 97.8 0.00014 3.1E-09 49.1 6.6 57 47-103 28-89 (448)
193 TIGR00892 2A0113 monocarboxyla 97.7 0.00054 1.2E-08 46.6 8.9 45 46-90 259-303 (455)
194 PRK06814 acylglycerophosphoeth 97.7 0.00025 5.5E-09 53.0 7.5 58 48-105 246-303 (1140)
195 PF03825 Nuc_H_symport: Nucleo 97.7 0.0009 1.9E-08 45.0 9.3 62 46-107 225-287 (400)
196 KOG0569|consensus 97.7 0.0016 3.5E-08 44.8 10.5 47 67-113 64-110 (485)
197 COG0738 FucP Fucose permease [ 97.7 0.0012 2.7E-08 44.2 9.6 90 15-109 228-318 (422)
198 KOG2504|consensus 97.6 0.00099 2.1E-08 46.2 9.3 86 17-107 292-379 (509)
199 PRK11010 ampG muropeptide tran 97.6 0.0013 2.8E-08 45.3 9.6 70 39-110 23-98 (491)
200 PRK15403 multidrug efflux syst 97.6 0.00058 1.3E-08 45.8 7.6 49 45-93 235-285 (413)
201 KOG3762|consensus 97.6 0.00023 4.9E-09 49.3 5.4 63 43-105 26-88 (618)
202 PRK11646 multidrug resistance 97.6 0.0012 2.6E-08 44.1 8.9 59 49-107 229-288 (400)
203 PF13347 MFS_2: MFS/sugar tran 97.5 6.2E-05 1.3E-09 50.6 2.5 64 47-110 21-89 (428)
204 PF00083 Sugar_tr: Sugar (and 97.5 7.9E-06 1.7E-10 54.9 -2.0 49 65-113 48-96 (451)
205 PF01306 LacY_symp: LacY proto 97.5 0.00026 5.6E-09 47.6 4.8 45 66-110 262-306 (412)
206 TIGR00788 fbt folate/biopterin 97.4 0.0019 4.1E-08 44.2 8.6 75 28-103 26-105 (468)
207 TIGR00880 2_A_01_02 Multidrug 97.4 0.00049 1.1E-08 38.4 5.0 40 71-110 6-45 (141)
208 KOG4686|consensus 97.4 0.0016 3.4E-08 42.4 7.5 46 54-99 291-336 (459)
209 KOG0255|consensus 97.4 0.0041 8.8E-08 43.0 9.8 91 14-113 309-400 (521)
210 KOG3764|consensus 97.4 0.00041 8.9E-09 46.5 4.7 56 58-113 101-156 (464)
211 PF03209 PUCC: PUCC protein; 97.4 0.002 4.3E-08 43.2 7.7 63 50-112 231-294 (403)
212 TIGR01301 GPH_sucrose GPH fami 97.3 0.0023 5E-08 44.1 8.1 44 67-110 309-353 (477)
213 KOG2504|consensus 97.3 0.0025 5.4E-08 44.2 8.1 65 49-113 67-131 (509)
214 KOG0637|consensus 97.3 0.00021 4.6E-09 48.4 2.8 84 27-111 32-120 (498)
215 KOG2563|consensus 97.2 0.0056 1.2E-07 41.8 8.6 65 40-108 60-124 (480)
216 KOG0253|consensus 97.1 0.0022 4.8E-08 43.1 5.6 63 50-112 100-162 (528)
217 PRK11462 putative transporter; 97.1 0.004 8.6E-08 42.6 7.0 61 48-108 30-95 (460)
218 TIGR00926 2A1704 Peptide:H+ sy 97.0 0.0049 1.1E-07 44.1 7.5 70 43-112 3-73 (654)
219 KOG2325|consensus 97.0 0.003 6.6E-08 43.5 6.1 59 52-110 59-119 (488)
220 PF06963 FPN1: Ferroportin1 (F 96.8 0.022 4.7E-07 38.9 8.4 61 53-113 283-343 (432)
221 COG2211 MelB Na+/melibiose sym 96.7 0.0068 1.5E-07 41.6 5.7 61 50-110 35-100 (467)
222 PF03137 OATP: Organic Anion T 96.6 0.00047 1E-08 48.0 0.0 72 41-112 16-87 (539)
223 KOG2532|consensus 96.6 0.0084 1.8E-07 41.3 5.9 54 58-111 68-121 (466)
224 COG2807 CynX Cyanate permease 96.6 0.026 5.7E-07 37.7 7.7 64 44-107 28-91 (395)
225 KOG3626|consensus 96.5 0.037 8.1E-07 40.1 8.4 60 33-92 397-458 (735)
226 COG0477 ProP Permeases of the 96.5 0.057 1.2E-06 33.6 8.6 57 46-102 20-78 (338)
227 TIGR00788 fbt folate/biopterin 96.3 0.016 3.5E-07 39.8 5.7 52 56-107 281-332 (468)
228 PF05978 UNC-93: Ion channel r 96.2 0.065 1.4E-06 31.5 7.3 69 38-106 6-80 (156)
229 PF06609 TRI12: Fungal trichot 96.2 0.14 3.1E-06 36.5 9.7 64 44-107 327-394 (599)
230 KOG4332|consensus 95.8 0.0053 1.2E-07 39.7 1.6 61 47-107 56-116 (454)
231 KOG2563|consensus 95.6 0.28 6.2E-06 33.9 9.0 39 56-94 294-332 (480)
232 KOG2816|consensus 95.1 0.38 8.2E-06 33.4 8.6 37 72-108 71-107 (463)
233 PF03137 OATP: Organic Anion T 95.0 0.0062 1.4E-07 42.6 0.0 59 34-92 311-371 (539)
234 KOG3574|consensus 94.9 0.23 5.1E-06 33.9 6.9 79 26-108 30-114 (510)
235 TIGR00769 AAA ADP/ATP carrier 94.8 0.89 1.9E-05 31.7 10.2 52 64-115 44-96 (472)
236 PF11700 ATG22: Vacuole efflux 94.6 0.51 1.1E-05 32.9 8.3 42 67-108 74-116 (477)
237 PF01770 Folate_carrier: Reduc 94.2 0.71 1.5E-05 31.6 8.0 69 29-97 248-319 (412)
238 PF02990 EMP70: Endomembrane p 94.1 0.61 1.3E-05 32.9 7.8 72 17-94 252-328 (521)
239 KOG3626|consensus 94.0 0.067 1.5E-06 38.9 3.1 84 29-112 98-181 (735)
240 PRK10207 dipeptide/tripeptide 93.8 0.77 1.7E-05 32.0 7.9 42 67-108 313-361 (489)
241 KOG1237|consensus 93.4 2.1 4.5E-05 30.7 9.6 87 26-112 36-123 (571)
242 KOG2533|consensus 93.4 1.6 3.5E-05 30.7 8.9 43 57-99 75-117 (495)
243 COG2270 Permeases of the major 93.3 0.64 1.4E-05 31.9 6.6 63 48-110 36-106 (438)
244 KOG3764|consensus 93.2 0.058 1.3E-06 36.7 1.7 42 54-95 297-338 (464)
245 COG5336 Uncharacterized protei 92.1 0.72 1.6E-05 25.4 4.6 31 74-104 53-84 (116)
246 PF03219 TLC: TLC ATP/ADP tran 92.1 3 6.6E-05 29.4 10.3 37 68-104 324-360 (491)
247 PF07672 MFS_Mycoplasma: Mycop 91.4 1.2 2.5E-05 28.7 5.7 16 12-27 83-98 (267)
248 PF03092 BT1: BT1 family; Int 91.2 0.46 1E-05 32.5 4.2 48 59-106 251-298 (433)
249 PTZ00207 hypothetical protein; 90.2 2.5 5.3E-05 30.5 7.0 68 15-87 345-415 (591)
250 PF03092 BT1: BT1 family; Int 90.1 1.6 3.4E-05 30.0 6.0 59 51-110 13-76 (433)
251 COG3202 ATP/ADP translocase [E 90.1 5.1 0.00011 28.3 8.6 41 75-115 74-114 (509)
252 PF03219 TLC: TLC ATP/ADP tran 90.0 5.2 0.00011 28.2 9.1 41 75-115 71-111 (491)
253 KOG1330|consensus 88.6 3.3 7.1E-05 29.1 6.5 34 58-91 278-311 (493)
254 TIGR03733 lanti_perm_MutG lant 86.9 5.8 0.00013 25.1 10.0 39 69-107 135-173 (248)
255 TIGR00769 AAA ADP/ATP carrier 86.9 8.8 0.00019 27.0 9.9 36 68-103 308-343 (472)
256 PF01770 Folate_carrier: Reduc 86.3 8.9 0.00019 26.5 8.3 83 26-110 4-88 (412)
257 KOG4830|consensus 85.8 1.6 3.4E-05 28.6 3.6 45 51-95 40-93 (412)
258 PF01788 PsbJ: PsbJ; InterPro 85.3 2.3 5E-05 18.9 3.1 29 87-115 2-30 (40)
259 KOG2325|consensus 83.0 8 0.00017 27.4 6.3 81 26-106 261-346 (488)
260 KOG3762|consensus 81.9 6.3 0.00014 28.5 5.4 66 46-111 389-454 (618)
261 KOG3098|consensus 81.3 16 0.00035 25.7 8.3 44 67-110 283-329 (461)
262 TIGR03732 lanti_perm_MutE lant 81.2 11 0.00024 23.8 9.2 33 71-103 131-163 (241)
263 TIGR02230 ATPase_gene1 F0F1-AT 81.0 7.1 0.00015 21.3 6.6 31 76-106 56-86 (100)
264 PRK09584 tppB putative tripept 80.5 17 0.00038 25.5 8.1 39 67-105 154-192 (500)
265 TIGR00880 2_A_01_02 Multidrug 79.1 8.2 0.00018 20.9 8.8 38 66-103 90-127 (141)
266 PF04341 DUF485: Protein of un 78.4 8.1 0.00018 20.5 7.5 40 15-57 6-45 (91)
267 TIGR01272 gluP glucose/galacto 78.0 16 0.00036 23.8 7.6 29 69-97 270-298 (310)
268 PF02694 UPF0060: Uncharacteri 77.2 10 0.00022 21.0 4.8 47 63-109 54-100 (107)
269 PRK15462 dipeptide/tripeptide 76.6 24 0.00053 25.0 8.7 42 65-106 140-181 (493)
270 PF03209 PUCC: PUCC protein; 76.3 14 0.00031 25.5 5.7 52 54-106 6-63 (403)
271 PF05232 BTP: Bacterial Transm 76.3 8 0.00017 19.3 5.0 47 47-93 18-64 (67)
272 PF06963 FPN1: Ferroportin1 (F 75.9 24 0.00052 24.6 10.2 39 65-103 40-78 (432)
273 PF09605 Trep_Strep: Hypotheti 75.4 16 0.00034 22.3 5.5 43 69-111 34-76 (186)
274 PF05631 DUF791: Protein of un 74.6 24 0.00052 24.0 6.8 60 28-89 245-304 (354)
275 PF13000 Acatn: Acetyl-coenzym 74.4 4.1 8.9E-05 29.0 2.9 60 50-109 22-87 (544)
276 COG3086 RseC Positive regulato 73.5 16 0.00034 21.4 6.5 38 59-96 68-105 (150)
277 PRK02237 hypothetical protein; 73.3 14 0.00029 20.5 5.3 47 64-110 57-103 (109)
278 TIGR00267 conserved hypothetic 73.0 17 0.00038 21.7 9.5 30 72-101 122-151 (169)
279 KOG3098|consensus 72.3 32 0.00069 24.4 7.2 67 41-107 22-94 (461)
280 KOG1278|consensus 71.5 1.7 3.6E-05 31.0 0.5 9 17-25 318-326 (628)
281 COG1268 BioY Uncharacterized c 70.7 22 0.00047 21.8 5.3 23 70-92 89-111 (184)
282 PF04226 Transgly_assoc: Trans 69.9 10 0.00022 17.6 2.9 17 76-92 4-20 (48)
283 KOG2816|consensus 68.2 9.4 0.0002 26.8 3.6 57 57-113 271-328 (463)
284 KOG3097|consensus 67.5 37 0.0008 23.2 7.1 66 33-104 34-99 (390)
285 PF02632 BioY: BioY family; I 67.4 23 0.00049 20.8 5.1 23 71-93 61-83 (148)
286 PF13493 DUF4118: Domain of un 65.8 12 0.00026 20.0 3.1 25 69-93 81-105 (105)
287 KOG0637|consensus 64.4 50 0.0011 23.6 7.9 34 68-101 337-370 (498)
288 COG4139 BtuC ABC-type cobalami 64.3 30 0.00065 22.2 4.8 45 72-116 117-166 (326)
289 PF08566 Pam17: Mitochondrial 64.3 30 0.00064 21.0 4.8 17 13-29 24-40 (173)
290 PF06898 YqfD: Putative stage 62.7 8 0.00017 26.4 2.4 27 84-110 78-104 (385)
291 TIGR00924 yjdL_sub1_fam amino 62.1 52 0.0011 23.0 8.3 37 66-102 144-180 (475)
292 TIGR02185 Trep_Strep conserved 60.5 37 0.00079 20.8 5.0 37 70-106 37-73 (189)
293 PF11283 DUF3084: Protein of u 60.4 21 0.00046 18.6 3.1 21 78-98 15-35 (79)
294 TIGR02876 spore_yqfD sporulati 60.3 9.7 0.00021 26.0 2.4 27 84-110 75-101 (382)
295 PF09605 Trep_Strep: Hypotheti 60.0 37 0.0008 20.7 7.1 28 67-94 156-183 (186)
296 KOG4686|consensus 59.5 1.3 2.8E-05 29.5 -1.6 38 57-94 73-111 (459)
297 PF05814 DUF843: Baculovirus p 59.0 25 0.00055 18.5 5.1 38 76-113 6-44 (83)
298 PF07698 7TM-7TMR_HD: 7TM rece 57.4 40 0.00088 20.3 4.8 27 74-100 108-134 (194)
299 PF11947 DUF3464: Protein of u 56.0 30 0.00065 20.5 3.7 12 81-92 114-125 (153)
300 KOG2615|consensus 55.7 70 0.0015 22.5 6.5 36 56-91 290-325 (451)
301 PRK14209 camphor resistance pr 55.2 27 0.00059 19.8 3.3 16 77-92 105-120 (124)
302 PF12911 OppC_N: N-terminal TM 54.3 22 0.00047 16.6 2.6 13 88-100 10-22 (56)
303 PRK15433 branched-chain amino 53.3 78 0.0017 22.4 7.7 72 31-103 11-90 (439)
304 COG2076 EmrE Membrane transpor 52.1 40 0.00087 18.7 6.2 28 80-107 17-44 (106)
305 KOG4516|consensus 51.9 41 0.00088 18.7 3.9 15 83-97 40-54 (118)
306 PF13937 DUF4212: Domain of un 49.3 39 0.00084 17.7 6.0 27 67-93 49-76 (81)
307 COG1742 Uncharacterized conser 49.1 30 0.00065 19.1 2.7 42 65-106 57-98 (109)
308 PF00528 BPD_transp_1: Binding 49.1 52 0.0011 19.1 5.7 21 73-93 162-182 (185)
309 PRK11469 hypothetical protein; 48.6 62 0.0013 19.8 5.6 32 76-107 148-179 (188)
310 PRK01636 ccrB camphor resistan 48.4 33 0.00071 19.3 3.0 22 74-95 92-113 (118)
311 KOG2601|consensus 47.3 1E+02 0.0022 21.9 8.2 39 66-104 66-104 (503)
312 COG1380 Putative effector of m 46.2 23 0.00049 20.3 2.1 30 64-93 88-117 (128)
313 COG2119 Predicted membrane pro 45.8 71 0.0015 19.7 9.1 35 73-107 144-178 (190)
314 COG3162 Predicted membrane pro 45.4 52 0.0011 18.0 7.2 43 11-56 10-52 (102)
315 KOG3500|consensus 44.7 48 0.001 17.4 3.7 40 71-110 9-48 (84)
316 TIGR00806 rfc RFC reduced fola 44.3 1.2E+02 0.0026 22.0 9.1 60 33-92 267-327 (511)
317 COG3105 Uncharacterized protei 42.7 60 0.0013 18.7 3.4 23 72-94 10-32 (138)
318 PF08080 zf-RNPHF: RNPHF zinc 42.2 8.4 0.00018 16.6 0.0 12 86-97 2-13 (36)
319 PF05525 Branch_AA_trans: Bran 41.9 1.2E+02 0.0027 21.3 6.6 71 33-104 8-86 (427)
320 PF11286 DUF3087: Protein of u 41.5 80 0.0017 19.1 4.6 22 75-96 55-76 (165)
321 PRK14231 camphor resistance pr 40.7 50 0.0011 18.9 3.0 7 85-91 115-121 (129)
322 PF11990 DUF3487: Protein of u 40.1 71 0.0015 18.1 5.9 16 79-94 65-80 (121)
323 KOG1277|consensus 40.1 62 0.0013 23.2 3.7 22 18-41 284-305 (593)
324 COG3104 PTR2 Dipeptide/tripept 39.7 92 0.002 22.4 4.6 43 68-110 160-202 (498)
325 cd02432 Nodulin-21_like_1 Nodu 39.1 99 0.0022 19.5 10.3 49 45-100 150-198 (218)
326 TIGR00796 livcs branched-chain 38.5 1.3E+02 0.0029 20.7 7.0 60 46-105 12-79 (378)
327 PF03596 Cad: Cadmium resistan 38.4 97 0.0021 19.2 4.1 10 47-56 113-122 (191)
328 PF13940 Ldr_toxin: Toxin Ldr, 38.3 38 0.00083 14.5 2.7 18 72-89 17-34 (35)
329 PF09527 ATPase_gene1: Putativ 37.9 48 0.001 15.5 6.4 26 77-102 15-40 (55)
330 PF00854 PTR2: POT family; In 37.4 1E+02 0.0023 20.6 4.6 62 48-109 52-118 (372)
331 PF14068 YuiB: Putative membra 37.3 34 0.00073 18.8 1.8 24 70-93 74-97 (102)
332 PF01169 UPF0016: Uncharacteri 35.4 68 0.0015 16.5 4.9 30 74-103 45-74 (78)
333 PRK11677 hypothetical protein; 34.2 63 0.0014 18.7 2.7 19 74-92 7-25 (134)
334 PF02659 DUF204: Domain of unk 34.1 63 0.0014 15.7 4.8 17 77-93 38-54 (67)
335 COG3493 CitS Na+/citrate sympo 33.9 81 0.0017 22.0 3.5 24 73-96 212-235 (438)
336 KOG3097|consensus 33.0 1.7E+02 0.0036 20.3 5.8 39 64-102 311-349 (390)
337 PF06939 DUF1286: Protein of u 32.4 68 0.0015 18.0 2.5 16 77-92 33-48 (114)
338 COG4708 Predicted membrane pro 31.5 47 0.001 19.6 1.9 22 73-94 144-165 (169)
339 PF11085 YqhR: Conserved membr 31.4 1.3E+02 0.0027 18.4 8.2 18 73-90 78-95 (173)
340 COG1178 ThiP ABC-type Fe3+ tra 31.4 2E+02 0.0043 21.0 5.3 42 69-110 65-109 (540)
341 PTZ00208 65 kDa invariant surf 31.3 74 0.0016 22.2 3.0 33 83-115 375-407 (436)
342 PRK10255 PTS system N-acetyl g 30.9 1.5E+02 0.0032 22.3 4.6 37 74-110 99-148 (648)
343 PRK02565 photosystem II reacti 30.6 9.4 0.0002 16.8 -0.8 14 91-104 5-18 (39)
344 PF10518 TAT_signal: TAT (twin 30.6 46 0.001 13.1 2.1 15 89-103 1-15 (26)
345 TIGR00783 ccs citrate carrier 30.2 1.3E+02 0.0029 20.6 4.0 23 73-95 126-148 (347)
346 COG1271 CydA Cytochrome bd-typ 29.8 1.9E+02 0.0042 20.7 4.8 34 69-102 364-397 (457)
347 PRK11486 flagellar biosynthesi 29.5 1.2E+02 0.0025 17.4 3.4 26 67-92 18-44 (124)
348 PRK07021 fliL flagellar basal 29.1 71 0.0015 18.9 2.5 9 91-99 14-22 (162)
349 TIGR02979 phageshock_pspD phag 28.5 28 0.00061 16.9 0.6 17 81-97 22-38 (59)
350 cd02435 CCC1 CCC1. CCC1: This 28.5 1.7E+02 0.0036 18.8 8.7 20 74-93 190-209 (241)
351 PRK03612 spermidine synthase; 28.1 2.3E+02 0.0051 20.5 9.5 31 58-88 45-75 (521)
352 cd02434 Nodulin-21_like_3 Nodu 28.0 1.6E+02 0.0035 18.6 10.7 24 76-99 180-203 (225)
353 KOG3827|consensus 27.7 40 0.00087 23.2 1.4 58 26-83 62-119 (400)
354 CHL00114 psbX photosystem II p 27.6 70 0.0015 14.2 2.9 7 86-92 32-38 (39)
355 KOG4812|consensus 27.6 1.5E+02 0.0031 19.3 3.6 30 28-57 162-191 (262)
356 PF08405 Calici_PP_N: Viral po 27.5 98 0.0021 20.9 3.0 15 81-95 234-248 (358)
357 PF03390 2HCT: 2-hydroxycarbox 27.4 1.5E+02 0.0033 20.9 4.0 38 59-96 181-218 (414)
358 PF01988 VIT1: VIT family; In 27.4 1.6E+02 0.0035 18.3 8.5 50 46-101 146-195 (213)
359 PRK11431 multidrug efflux syst 27.3 1.2E+02 0.0025 16.7 6.8 22 85-106 77-98 (105)
360 PRK13108 prolipoprotein diacyl 27.1 2.4E+02 0.0052 20.2 5.9 12 53-64 43-54 (460)
361 COG0586 DedA Uncharacterized m 27.1 1.6E+02 0.0035 18.3 4.0 30 67-96 58-87 (208)
362 KOG2765|consensus 26.8 98 0.0021 21.6 3.0 30 68-99 191-220 (416)
363 PRK13499 rhamnose-proton sympo 26.5 2.2E+02 0.0047 19.5 9.3 25 68-92 75-99 (345)
364 PF11712 Vma12: Endoplasmic re 26.4 1.4E+02 0.003 17.3 6.6 12 74-85 86-97 (142)
365 COG3913 SciT Uncharacterized p 26.3 26 0.00056 21.8 0.3 15 86-100 80-94 (227)
366 TIGR00688 rarD rarD protein. T 26.0 1.8E+02 0.0039 18.3 6.9 17 85-101 117-133 (256)
367 PF01769 MgtE: Divalent cation 25.9 1.3E+02 0.0029 16.9 3.9 31 76-106 93-123 (135)
368 PRK01821 hypothetical protein; 25.7 72 0.0016 18.4 2.0 22 73-94 101-122 (133)
369 PF01864 DUF46: Putative integ 25.5 1.7E+02 0.0036 17.9 3.6 28 67-94 89-116 (175)
370 PF12768 Rax2: Cortical protei 25.5 38 0.00082 22.2 0.9 28 67-94 231-258 (281)
371 PRK02251 putative septation in 25.1 1.2E+02 0.0026 16.2 4.2 11 22-32 30-40 (87)
372 COG1114 BrnQ Branched-chain am 25.0 2.6E+02 0.0056 19.9 6.1 15 86-100 70-84 (431)
373 COG0786 GltS Na+/glutamate sym 24.7 1.6E+02 0.0035 20.6 3.7 19 74-92 171-189 (404)
374 KOG1307|consensus 24.5 26 0.00057 24.9 0.1 19 45-63 441-459 (588)
375 PRK01658 holin-like protein; V 24.4 75 0.0016 18.0 1.9 20 73-92 96-115 (122)
376 COG2212 MnhF Multisubunit Na+/ 24.0 1.3E+02 0.0028 16.1 3.3 24 68-92 64-87 (89)
377 PF02990 EMP70: Endomembrane p 23.6 2.9E+02 0.0063 20.0 5.7 21 67-87 371-391 (521)
378 COG1470 Predicted membrane pro 23.5 83 0.0018 22.5 2.3 10 84-93 504-513 (513)
379 COG4125 Predicted membrane pro 23.2 1.7E+02 0.0037 17.2 4.6 41 51-91 28-68 (149)
380 TIGR00807 malonate_madL malona 23.0 1.4E+02 0.003 17.0 2.7 29 66-94 91-119 (125)
381 PRK15430 putative chlorampheni 23.0 2.3E+02 0.0049 18.5 7.2 16 86-101 121-136 (296)
382 PF09125 COX2-transmemb: Cytoc 22.9 87 0.0019 13.7 3.2 18 93-110 14-31 (38)
383 PF08551 DUF1751: Eukaryotic i 22.9 1.4E+02 0.0031 16.1 5.3 18 72-89 58-75 (99)
384 CHL00190 psaM photosystem I su 22.6 80 0.0017 13.1 1.6 17 76-92 10-26 (30)
385 COG3202 ATP/ADP translocase [E 22.3 3.2E+02 0.0069 20.0 9.5 38 69-106 327-365 (509)
386 PRK05529 cell division protein 22.3 1.3E+02 0.0027 19.4 2.8 15 88-102 29-43 (255)
387 TIGR02908 CoxD_Bacillus cytoch 22.3 1.6E+02 0.0035 16.5 7.8 37 59-95 50-86 (110)
388 PF09584 Phageshock_PspD: Phag 22.0 1.1E+02 0.0024 15.3 2.0 17 81-97 27-43 (66)
389 PF03817 MadL: Malonate transp 21.5 1.3E+02 0.0028 17.2 2.4 28 67-94 92-119 (125)
390 TIGR00821 EII-GUT PTS system, 21.4 2.1E+02 0.0045 17.5 3.7 21 70-90 144-164 (181)
391 CHL00108 psbJ photosystem II p 21.3 7.5 0.00016 17.2 -1.9 15 90-104 5-19 (40)
392 TIGR03173 pbuX xanthine permea 21.3 2.9E+02 0.0063 19.1 5.1 48 50-97 14-62 (406)
393 PF13536 EmrE: Multidrug resis 21.2 1.6E+02 0.0034 16.0 8.0 22 86-107 82-103 (113)
394 COG3833 MalG ABC-type maltose 21.2 2.6E+02 0.0057 18.6 6.4 38 67-104 80-120 (282)
395 CHL00024 psbI photosystem II p 21.1 73 0.0016 13.8 1.1 20 74-93 12-31 (36)
396 KOG4006|consensus 21.0 99 0.0022 20.7 2.1 26 75-100 5-30 (311)
397 PF02532 PsbI: Photosystem II 21.0 96 0.0021 13.4 3.1 20 74-93 12-31 (36)
398 PF15562 Imm10: Immunity prote 21.0 1.2E+02 0.0026 14.8 2.0 7 88-94 35-41 (61)
399 PF13150 DUF3989: Protein of u 20.8 1.5E+02 0.0033 15.7 2.8 16 95-110 30-45 (85)
400 PF10399 UCR_Fe-S_N: Ubiquitin 20.7 1E+02 0.0023 13.8 2.7 10 89-98 8-17 (41)
401 cd02431 Ferritin_CCC1_C CCC1-r 20.6 2E+02 0.0043 17.0 9.2 23 76-98 105-127 (149)
402 PF11752 DUF3309: Protein of u 20.2 1.2E+02 0.0026 14.3 1.9 33 74-106 9-41 (49)
403 PF01925 TauE: Sulfite exporte 20.1 2.3E+02 0.005 17.5 9.0 28 69-96 199-226 (240)
404 TIGR00210 gltS sodium--glutama 20.1 3.2E+02 0.0069 19.1 4.5 15 49-63 142-156 (398)
No 1
>KOG0569|consensus
Probab=99.70 E-value=3.9e-16 Score=104.41 Aligned_cols=103 Identities=45% Similarity=0.800 Sum_probs=95.3
Q ss_pred ccchhhhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy17792 12 SKISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMG 91 (116)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~g 91 (116)
++.+++|+++++..|++..+++.+...++++|.+.+.+|...++++.|++..++.+.+...+.+..+.+++++++.||.|
T Consensus 254 ~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~g 333 (485)
T KOG0569|consen 254 KQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLG 333 (485)
T ss_pred cCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHhhhhHHHHHHHHHHHHHH
Q psy17792 92 RRTLHLYGLGGMFIFSIFITISL 114 (116)
Q Consensus 92 rr~~~~~~~~~~~~~~~~~~~~~ 114 (116)
||+.++.+..++.+....+.+..
T Consensus 334 RRpLll~~~~~~~~~~~~~~~~~ 356 (485)
T KOG0569|consen 334 RRPLLLISLSLMAVALLLMSIAL 356 (485)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888887776553
No 2
>KOG0254|consensus
Probab=99.35 E-value=1.5e-11 Score=83.77 Aligned_cols=97 Identities=43% Similarity=0.705 Sum_probs=84.8
Q ss_pred hhhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhH
Q psy17792 16 MSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTL 95 (116)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~ 95 (116)
+.++++ +..+++.++++.+..++|+++++...||.+.+++..|.+... ........+...+++.++.++.||+|||+.
T Consensus 284 ~~~l~~-~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~l 361 (513)
T KOG0254|consen 284 WGELFS-PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKL 361 (513)
T ss_pred HHHhcC-cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 556664 567888999999999999999999999999999999988655 677788888999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHHHH
Q psy17792 96 HLYGLGGMFIFSIFITISL 114 (116)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~ 114 (116)
++.+...+.++..+++..+
T Consensus 362 ll~s~~~m~~~~~~~~~~~ 380 (513)
T KOG0254|consen 362 LLFGAAGMSICLVILAVVG 380 (513)
T ss_pred HHHhHHHHHHHHHHHHHHH
Confidence 9999999999888887654
No 3
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.12 E-value=1.4e-09 Score=76.98 Aligned_cols=69 Identities=14% Similarity=0.108 Sum_probs=57.6
Q ss_pred hhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHH
Q psy17792 44 INAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITI 112 (116)
Q Consensus 44 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~ 112 (116)
...+....|.+.+++|++..+..+......++.+++.+++|+++||+|||+.++.+.++.+++.++.++
T Consensus 183 ~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~af 251 (742)
T TIGR01299 183 VFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSF 251 (742)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 344666788888899999988888999999999999999999999999999998887766665555443
No 4
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.10 E-value=1.6e-09 Score=72.09 Aligned_cols=88 Identities=17% Similarity=0.016 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHH
Q psy17792 26 RKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFI 105 (116)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~ 105 (116)
++..+...++.++.+........+..|.+.+++|.+..+.++......++..++.++.|+++||+|||+++..+.++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~ 85 (412)
T TIGR02332 6 FRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGI 85 (412)
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHH
Confidence 33455555556666666666777888888899999999999999999999999999999999999999999888877777
Q ss_pred HHHHHHHH
Q psy17792 106 FSIFITIS 113 (116)
Q Consensus 106 ~~~~~~~~ 113 (116)
.....+++
T Consensus 86 ~~~~~~~~ 93 (412)
T TIGR02332 86 ASTATMFA 93 (412)
T ss_pred HHHHHHHh
Confidence 66665543
No 5
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.10 E-value=1.2e-09 Score=74.28 Aligned_cols=97 Identities=16% Similarity=0.123 Sum_probs=56.3
Q ss_pred hhhhhhccccchH--HHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhH------------HHHHHHHHHHHHHH
Q psy17792 15 SMSELLCSSTLRK--PLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAK------------FTTIGIGAVMVTMT 80 (116)
Q Consensus 15 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~------------~~~~~~~~~~~~~~ 80 (116)
+++++++++..++ +..+.+...++.+...++....+.|.++++.|.+..... .......++.+++.
T Consensus 273 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~ 352 (502)
T TIGR00887 273 SWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGY 352 (502)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677776422121 222222222333333334455567888888887654211 12233445667788
Q ss_pred HHHHHhhhcccchhHHhhhhHHHHHHHHHHH
Q psy17792 81 IISIPLMDRMGRRTLHLYGLGGMFIFSIFIT 111 (116)
Q Consensus 81 ~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~ 111 (116)
++.++++||+|||++++.+..+.+++...++
T Consensus 353 ~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~ 383 (502)
T TIGR00887 353 WVTVFLVDIIGRKPIQLMGFFILTVLFFVLG 383 (502)
T ss_pred HHHHHHhhhhcchhHHHHHHHHHHHHHHHHH
Confidence 8999999999999998877766555544443
No 6
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.09 E-value=2.1e-09 Score=72.85 Aligned_cols=84 Identities=11% Similarity=-0.046 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHH
Q psy17792 29 LIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSI 108 (116)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~ 108 (116)
.+......++...........+.|.+.+++|.+..+..+......++..++.++.|+++||+|||+++..+.+...+..+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~ 116 (476)
T PLN00028 37 AFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVF 116 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 33334444444444445566677889999999998888888888888999999999999999999998887776666555
Q ss_pred HHHH
Q psy17792 109 FITI 112 (116)
Q Consensus 109 ~~~~ 112 (116)
..+.
T Consensus 117 ~~~~ 120 (476)
T PLN00028 117 CMSL 120 (476)
T ss_pred HHHH
Confidence 4443
No 7
>PRK15075 citrate-proton symporter; Provisional
Probab=99.08 E-value=2e-09 Score=71.97 Aligned_cols=62 Identities=19% Similarity=0.186 Sum_probs=49.0
Q ss_pred HhhchhhhHHhHHHHHhh-cCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhH
Q psy17792 40 QFSGINAVFYYSTALFES-SGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLG 101 (116)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~ 101 (116)
+...+....+|.|.++++ .|.+..+.........++..++.++.|+++||+|||+++..+..
T Consensus 250 ~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~ 312 (434)
T PRK15075 250 TTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTV 312 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 344455667777877765 79988887777888888899999999999999999998776543
No 8
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.08 E-value=3.1e-09 Score=72.25 Aligned_cols=86 Identities=15% Similarity=0.081 Sum_probs=63.0
Q ss_pred chHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHhhhhHHH
Q psy17792 25 LRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRM-GRRTLHLYGLGGM 103 (116)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-grr~~~~~~~~~~ 103 (116)
+++.+...+.......++.+....+...++.+++|++..++........+...++.+++|+++||+ |||+.+..+.+..
T Consensus 7 ~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~ 86 (493)
T PRK15462 7 QPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLM 86 (493)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHH
Confidence 355555555555555665554444444444566899999888888888888899999999999999 9999998887776
Q ss_pred HHHHHHH
Q psy17792 104 FIFSIFI 110 (116)
Q Consensus 104 ~~~~~~~ 110 (116)
.+....+
T Consensus 87 ~lg~lll 93 (493)
T PRK15462 87 AIGHVVL 93 (493)
T ss_pred HHHHHHH
Confidence 6655444
No 9
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.08 E-value=7.6e-09 Score=67.54 Aligned_cols=84 Identities=21% Similarity=0.299 Sum_probs=55.5
Q ss_pred chhhhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHH-hhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy17792 14 ISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALF-ESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGR 92 (116)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~gr 92 (116)
.+.++.++++ +++............. .......+.|.+. ++.|.+..+.........+...++.++.++++||+||
T Consensus 208 ~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~ 284 (394)
T TIGR00883 208 GPIRETLTKH--RKPFLLGLGLVIATTT-TFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGR 284 (394)
T ss_pred CCHHHHHHhc--hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 3456666554 2223333333333333 3344445556655 6678888888888888888999999999999999999
Q ss_pred hhHHhhhh
Q psy17792 93 RTLHLYGL 100 (116)
Q Consensus 93 r~~~~~~~ 100 (116)
|+.+..+.
T Consensus 285 ~~~~~~~~ 292 (394)
T TIGR00883 285 RPVLIIFT 292 (394)
T ss_pred HHHHHHHH
Confidence 99776443
No 10
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.07 E-value=3.7e-09 Score=69.41 Aligned_cols=84 Identities=11% Similarity=-0.122 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHH
Q psy17792 28 PLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFS 107 (116)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~ 107 (116)
+.+...++..+.............|.+.++.|.+..+..+......++..++.++.|+++||+|||+++..+.++.++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~ 91 (405)
T TIGR00891 12 NAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGT 91 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 34444555555555566667777888889999999999999999999999999999999999999999988877666655
Q ss_pred HHHH
Q psy17792 108 IFIT 111 (116)
Q Consensus 108 ~~~~ 111 (116)
...+
T Consensus 92 ~~~~ 95 (405)
T TIGR00891 92 LACG 95 (405)
T ss_pred HHHH
Confidence 5444
No 11
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.06 E-value=4.7e-09 Score=71.28 Aligned_cols=86 Identities=20% Similarity=0.254 Sum_probs=56.8
Q ss_pred chhhhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHH-hhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy17792 14 ISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALF-ESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGR 92 (116)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~gr 92 (116)
.++++++++ +++.........++.. ..++....|.|.++ +..|.+..+.........++..++.++.|+++||+||
T Consensus 239 ~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr 315 (490)
T PRK10642 239 VSFKEIATK--HWRSLLTCIGLVIATN-VTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGR 315 (490)
T ss_pred CCHHHHHHH--hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 356666653 2444443333333333 33444555667666 4578887766666777778888999999999999999
Q ss_pred hhHHhhhhHH
Q psy17792 93 RTLHLYGLGG 102 (116)
Q Consensus 93 r~~~~~~~~~ 102 (116)
|+.+..+.++
T Consensus 316 r~~~~~~~~~ 325 (490)
T PRK10642 316 RPFVILGSVA 325 (490)
T ss_pred HHHHHHHHHH
Confidence 9988766543
No 12
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.06 E-value=1.4e-09 Score=73.04 Aligned_cols=64 Identities=22% Similarity=0.164 Sum_probs=54.1
Q ss_pred hHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHH
Q psy17792 47 VFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFIT 111 (116)
Q Consensus 47 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~ 111 (116)
..+..|++.++ |.+..+..+......++..++.++.|+++||+|||++++.+.++.++..+.++
T Consensus 48 ~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~ 111 (452)
T PRK11273 48 FALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMG 111 (452)
T ss_pred HHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHH
Confidence 45667888777 99999999999999999999999999999999999999888777666655544
No 13
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.06 E-value=8.7e-09 Score=68.74 Aligned_cols=85 Identities=44% Similarity=0.733 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHH
Q psy17792 27 KPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIF 106 (116)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~ 106 (116)
++.+....+.++.+........++.|++.++.|.+..+.........++..++.++.++++||+|||+.+..+..+..++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 362 (481)
T TIGR00879 283 RRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAIC 362 (481)
T ss_pred HHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 34455555556666666667788899999999998877778888888999999999999999999999988776665555
Q ss_pred HHHHH
Q psy17792 107 SIFIT 111 (116)
Q Consensus 107 ~~~~~ 111 (116)
...++
T Consensus 363 ~~~~~ 367 (481)
T TIGR00879 363 LFVLG 367 (481)
T ss_pred HHHHH
Confidence 44443
No 14
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.05 E-value=3.9e-09 Score=71.80 Aligned_cols=88 Identities=16% Similarity=0.158 Sum_probs=70.1
Q ss_pred hHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhc-ccchhHHhhhhHHHH
Q psy17792 26 RKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDR-MGRRTLHLYGLGGMF 104 (116)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr-~grr~~~~~~~~~~~ 104 (116)
+|....++...+...++.+....+...++.+++|.+..+..+..........+..+++|+++|| +|||+++..+.++..
T Consensus 13 p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~ 92 (489)
T PRK10207 13 PRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLA 92 (489)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHH
Confidence 5556666666667777776666777777778899999888888888887888888899999999 999999999998888
Q ss_pred HHHHHHHHH
Q psy17792 105 IFSIFITIS 113 (116)
Q Consensus 105 ~~~~~~~~~ 113 (116)
+..+.+++.
T Consensus 93 ~g~~~~~~~ 101 (489)
T PRK10207 93 IGYFMTGMS 101 (489)
T ss_pred HHHHHHHHh
Confidence 777665543
No 15
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.04 E-value=4.9e-09 Score=69.71 Aligned_cols=84 Identities=12% Similarity=0.085 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHH
Q psy17792 29 LIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSI 108 (116)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~ 108 (116)
.+.......+..........+..|.+.+++|.++.+..+......++..++.++.|+++||+|||+++..+.+..+++..
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~ 98 (426)
T PRK12307 19 ALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTG 98 (426)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 33444444554555555667788888899999999888889999999999999999999999999999988877777665
Q ss_pred HHHH
Q psy17792 109 FITI 112 (116)
Q Consensus 109 ~~~~ 112 (116)
..++
T Consensus 99 ~~~~ 102 (426)
T PRK12307 99 LSGL 102 (426)
T ss_pred HHHH
Confidence 5444
No 16
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.04 E-value=3.9e-09 Score=69.68 Aligned_cols=80 Identities=11% Similarity=0.082 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHHHHhhchhhhHHhHHH-HHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHH
Q psy17792 26 RKPLIIGIVMQLSQQFSGINAVFYYSTA-LFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMF 104 (116)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~ 104 (116)
++++.......+.... +........|. +.+++|.+..+.++......+...++.++.|+++||+|||+++..+.++.+
T Consensus 14 ~~~~~~l~~~~~~~~~-~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~ 92 (399)
T PRK05122 14 TLRIVSIVMFTFISYL-TIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCA 92 (399)
T ss_pred cHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHH
Confidence 4444443333333333 33444445554 567889999999999999999999999999999999999999998876655
Q ss_pred HH
Q psy17792 105 IF 106 (116)
Q Consensus 105 ~~ 106 (116)
+.
T Consensus 93 ~~ 94 (399)
T PRK05122 93 LS 94 (399)
T ss_pred HH
Confidence 43
No 17
>PRK10054 putative transporter; Provisional
Probab=99.03 E-value=6.3e-09 Score=68.93 Aligned_cols=72 Identities=15% Similarity=0.043 Sum_probs=54.9
Q ss_pred HhhchhhhHH-hHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHH
Q psy17792 40 QFSGINAVFY-YSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFIT 111 (116)
Q Consensus 40 ~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~ 111 (116)
...+.+.... ..+++.+++|.+..+.++......+...++.++.|+++||+|||+++..+.+...+....+.
T Consensus 19 ~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~ 91 (395)
T PRK10054 19 LTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIP 91 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHH
Confidence 3444444444 44455567899999999999998999999999999999999999998887766655544443
No 18
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.03 E-value=5.2e-09 Score=70.84 Aligned_cols=85 Identities=11% Similarity=-0.073 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHH
Q psy17792 28 PLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFS 107 (116)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~ 107 (116)
+.+..+++..+.............|.+.+++|.+..+..+......++..++.++.|+++||+|||+++..+.+..++..
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 99 (496)
T PRK03893 20 KAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGT 99 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 34444555555555555666777788889999999888888888899999999999999999999999988877666655
Q ss_pred HHHHH
Q psy17792 108 IFITI 112 (116)
Q Consensus 108 ~~~~~ 112 (116)
...+.
T Consensus 100 ~~~~~ 104 (496)
T PRK03893 100 LACGF 104 (496)
T ss_pred HHHHH
Confidence 54443
No 19
>TIGR00895 2A0115 benzoate transport.
Probab=99.03 E-value=5.2e-09 Score=68.46 Aligned_cols=81 Identities=19% Similarity=0.176 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHH
Q psy17792 31 IGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFI 110 (116)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~ 110 (116)
.......+..........++.|.+.++.|.+..+..+......++..++.++.|+++||+|||+.+..+..+..+.....
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~ 99 (398)
T TIGR00895 20 ILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLC 99 (398)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 33333344444444566778899999999999888888888899999999999999999999999988877666655544
Q ss_pred H
Q psy17792 111 T 111 (116)
Q Consensus 111 ~ 111 (116)
.
T Consensus 100 ~ 100 (398)
T TIGR00895 100 A 100 (398)
T ss_pred H
Confidence 3
No 20
>PRK10504 putative transporter; Provisional
Probab=99.02 E-value=5.6e-09 Score=70.37 Aligned_cols=79 Identities=18% Similarity=0.103 Sum_probs=61.7
Q ss_pred HHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHH
Q psy17792 33 IVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFIT 111 (116)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~ 111 (116)
+....+.............|.+.+++|.+..+..+......+...++.++.|+++||+|||++++.+..+..++.+..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~ 93 (471)
T PRK10504 15 VAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCA 93 (471)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555667788999999999998888888888888899999999999999999999887766665554433
No 21
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.01 E-value=4.3e-09 Score=70.97 Aligned_cols=86 Identities=13% Similarity=0.014 Sum_probs=58.1
Q ss_pred hhhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhH
Q psy17792 16 MSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTL 95 (116)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~ 95 (116)
..+.+|++..|. +.+.++..+.++....++.|++.++ ..+............+.+.+..+++|+++||+|+|++
T Consensus 245 ~~~vlk~~~~Wl-----lslly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~v 318 (462)
T PRK15034 245 QLPVLQRLHLWL-----LSLLYLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRV 318 (462)
T ss_pred HHHHhCCCchhH-----HHHHHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHH
Confidence 445666654432 3334556666667778788888766 3444333333445567788888999999999999999
Q ss_pred HhhhhHHHHHHH
Q psy17792 96 HLYGLGGMFIFS 107 (116)
Q Consensus 96 ~~~~~~~~~~~~ 107 (116)
+.++.++..++.
T Consensus 319 l~~~~i~~~i~~ 330 (462)
T PRK15034 319 TLINFIFMAIFS 330 (462)
T ss_pred HHHHHHHHHHHH
Confidence 988776555544
No 22
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.00 E-value=1.8e-08 Score=67.37 Aligned_cols=84 Identities=17% Similarity=0.145 Sum_probs=52.3
Q ss_pred chhhhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHH-hhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy17792 14 ISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALF-ESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGR 92 (116)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~gr 92 (116)
.+++++++++ +............+... +....|.|.++ ++.|.+..+.........+...++.++.|+++||+||
T Consensus 233 ~~~~~l~~~~---~~~~~~~~~~~~~~~~~-~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~gr 308 (432)
T PRK10406 233 GSLKGLWRNR---RAFIMVLGFTAAGSLCF-YTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGR 308 (432)
T ss_pred ccHHHHHhhH---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 3567777643 22222222222223333 33444556555 5678887777776777777778888899999999999
Q ss_pred hhHHhhhhH
Q psy17792 93 RTLHLYGLG 101 (116)
Q Consensus 93 r~~~~~~~~ 101 (116)
|+.+..+.+
T Consensus 309 r~~~~~~~~ 317 (432)
T PRK10406 309 RTSMLCFGS 317 (432)
T ss_pred hHHHHHHHH
Confidence 998766544
No 23
>PRK09952 shikimate transporter; Provisional
Probab=98.99 E-value=2.1e-08 Score=67.31 Aligned_cols=58 Identities=17% Similarity=0.064 Sum_probs=40.8
Q ss_pred hHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHH
Q psy17792 47 VFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMF 104 (116)
Q Consensus 47 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~ 104 (116)
..+..++..++.|.+............+...++.++.|+++||+|||+.+..+.++..
T Consensus 270 ~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~ 327 (438)
T PRK09952 270 TAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGT 327 (438)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 3344444445678877655455556677788888999999999999998877654433
No 24
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=98.99 E-value=7.6e-09 Score=68.40 Aligned_cols=72 Identities=13% Similarity=0.124 Sum_probs=58.0
Q ss_pred HhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHH
Q psy17792 40 QFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFIT 111 (116)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~ 111 (116)
............|.+.+++|.++.+..+......++..++.++.|+++||+|||+++..+.....+..+...
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 98 (406)
T PRK11551 27 EGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATA 98 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence 333334456667888899999999999999999999999999999999999999999888766665544433
No 25
>PRK11663 regulatory protein UhpC; Provisional
Probab=98.99 E-value=6.3e-09 Score=69.66 Aligned_cols=87 Identities=15% Similarity=0.112 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHH
Q psy17792 26 RKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFI 105 (116)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~ 105 (116)
++.......+.++...........+.|.+.+++|.+..+..+......++..++.++.|++.||+|||+++..+.++..+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~ 100 (434)
T PRK11663 21 RRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGI 100 (434)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHH
Confidence 33444444444444444444556778999999999999989999999999999999999999999999999888877776
Q ss_pred HHHHHHH
Q psy17792 106 FSIFITI 112 (116)
Q Consensus 106 ~~~~~~~ 112 (116)
..+..+.
T Consensus 101 ~~~~~~~ 107 (434)
T PRK11663 101 INILFGF 107 (434)
T ss_pred HHHHHHH
Confidence 6655543
No 26
>PRK03633 putative MFS family transporter protein; Provisional
Probab=98.98 E-value=9.9e-09 Score=67.54 Aligned_cols=78 Identities=8% Similarity=-0.110 Sum_probs=63.3
Q ss_pred HHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHH
Q psy17792 35 MQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITI 112 (116)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~ 112 (116)
...+...........+.|.+.++.|.+..+.++......++..++.++.|+++||+|||+.+..+.+...+.....+.
T Consensus 13 ~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~ 90 (381)
T PRK03633 13 CGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGL 90 (381)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334334445566777889999999999999999999999999999999999999999999998888777766555443
No 27
>PRK03699 putative transporter; Provisional
Probab=98.97 E-value=1.1e-08 Score=67.55 Aligned_cols=83 Identities=11% Similarity=-0.003 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHH
Q psy17792 29 LIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSI 108 (116)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~ 108 (116)
..+.....++.............|.+.+++|.+..+..+......++..++.++.|++.||+|||+++..+.++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~ 87 (394)
T PRK03699 8 LTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVA 87 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33333333443333334556677888899999999988888889999999999999999999999999888776665554
Q ss_pred HHH
Q psy17792 109 FIT 111 (116)
Q Consensus 109 ~~~ 111 (116)
..+
T Consensus 88 l~~ 90 (394)
T PRK03699 88 GLM 90 (394)
T ss_pred HHH
Confidence 443
No 28
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=98.96 E-value=1.1e-08 Score=66.90 Aligned_cols=71 Identities=20% Similarity=0.156 Sum_probs=58.0
Q ss_pred hchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHH
Q psy17792 42 SGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITI 112 (116)
Q Consensus 42 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~ 112 (116)
.+........|.+.+++|.+..+..+......++..++.++.|+++||+|||+.+..+.....+.......
T Consensus 19 ~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~ 89 (385)
T TIGR00710 19 LGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLAL 89 (385)
T ss_pred HHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence 34344455668888999999999999999999999999999999999999999998887776666555443
No 29
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=98.96 E-value=3.4e-08 Score=66.63 Aligned_cols=77 Identities=35% Similarity=0.596 Sum_probs=61.8
Q ss_pred HHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHH
Q psy17792 35 MQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFIT 111 (116)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~ 111 (116)
...+.+..+++...++.|++.++.|.+.....+......+...++.++.++++||+|||++++.+.++.+++.+.++
T Consensus 278 ~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~ 354 (479)
T PRK10077 278 LSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLG 354 (479)
T ss_pred HHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHH
Confidence 34455666667778899999999998877677777778888999999999999999999999888877766655543
No 30
>PRK03545 putative arabinose transporter; Provisional
Probab=98.96 E-value=1.5e-08 Score=66.91 Aligned_cols=67 Identities=10% Similarity=0.028 Sum_probs=56.3
Q ss_pred hhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHH
Q psy17792 46 AVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITI 112 (116)
Q Consensus 46 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~ 112 (116)
......|.+.+++|.+..+.++......+...++.++.|.++||+|||+++..+.....+.....+.
T Consensus 27 ~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 93 (390)
T PRK03545 27 VPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSAL 93 (390)
T ss_pred HHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHH
Confidence 3444568889999999999999999999999999999999999999999999887777766655544
No 31
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=98.95 E-value=6.8e-09 Score=70.07 Aligned_cols=65 Identities=11% Similarity=-0.012 Sum_probs=53.7
Q ss_pred hHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHH
Q psy17792 47 VFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFIT 111 (116)
Q Consensus 47 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~ 111 (116)
.....|.+.+++|.+..+.++......+...++.++.|+++||+|||+++..+.+..++..+.++
T Consensus 48 ~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~ 112 (467)
T PRK09556 48 FKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFG 112 (467)
T ss_pred hhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHH
Confidence 34456888899999999999999999999999999999999999999998777666555544443
No 32
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=98.95 E-value=1.3e-08 Score=67.04 Aligned_cols=82 Identities=16% Similarity=0.130 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHH
Q psy17792 30 IIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIF 109 (116)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~ 109 (116)
+.+.....+.+..+........|.+.+++|.+..+..+......+...++.++.|+++||+|||+.+..+..+..+....
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~ 84 (392)
T PRK10473 5 LLCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLL 84 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHH
Confidence 33444455555566566667789999999999988888888889999999999999999999999998887776666555
Q ss_pred HH
Q psy17792 110 IT 111 (116)
Q Consensus 110 ~~ 111 (116)
..
T Consensus 85 ~~ 86 (392)
T PRK10473 85 CS 86 (392)
T ss_pred HH
Confidence 44
No 33
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=98.95 E-value=1.4e-08 Score=68.62 Aligned_cols=55 Identities=15% Similarity=-0.025 Sum_probs=44.8
Q ss_pred hhhHHhHHHHH-hhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhh
Q psy17792 45 NAVFYYSTALF-ESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYG 99 (116)
Q Consensus 45 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~ 99 (116)
....++.|.++ ++.|++..+.........++..++.++.|+++||+|||+....+
T Consensus 275 ~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~ 330 (467)
T PRK09556 275 IGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVAC 330 (467)
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHH
Confidence 44556667555 56899988888888888899999999999999999999876544
No 34
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=98.93 E-value=1.8e-08 Score=68.64 Aligned_cols=85 Identities=19% Similarity=0.099 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHH
Q psy17792 29 LIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSI 108 (116)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~ 108 (116)
.+..+.+..+........++.-.|.+.+++|.+..+..+....+.+....+.++.|+++||+|||+++..+.++..+..+
T Consensus 7 ~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~ 86 (495)
T PRK14995 7 TLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASL 86 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 34445555666666666777788999999999999999999999999999999999999999999999998888877776
Q ss_pred HHHHH
Q psy17792 109 FITIS 113 (116)
Q Consensus 109 ~~~~~ 113 (116)
..+.+
T Consensus 87 ~~~~a 91 (495)
T PRK14995 87 AAAFS 91 (495)
T ss_pred HHHHc
Confidence 66543
No 35
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=98.93 E-value=4e-09 Score=68.48 Aligned_cols=69 Identities=13% Similarity=-0.008 Sum_probs=59.1
Q ss_pred hhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHHH
Q psy17792 45 NAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITIS 113 (116)
Q Consensus 45 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~~ 113 (116)
+....+.|.+.+++|.+..+.++......++..++.++.|+++||+|||+++..+..+..+.....+..
T Consensus 20 ~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~ 88 (377)
T TIGR00890 20 YTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIA 88 (377)
T ss_pred hhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHH
Confidence 345567899999999999999999999999999999999999999999999998887777666555443
No 36
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=98.93 E-value=1.7e-08 Score=66.65 Aligned_cols=65 Identities=15% Similarity=0.146 Sum_probs=54.1
Q ss_pred hhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHH
Q psy17792 46 AVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFI 110 (116)
Q Consensus 46 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~ 110 (116)
......|.+.+++|.+..+..+......+...++.++.|+++||+|||+.+..+.....+..+..
T Consensus 26 ~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~ 90 (394)
T PRK11652 26 IYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVA 90 (394)
T ss_pred HHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 33445678889999999999999999999999999999999999999999988776666555444
No 37
>PF12832 MFS_1_like: MFS_1 like family
Probab=98.93 E-value=1.9e-08 Score=52.02 Aligned_cols=65 Identities=15% Similarity=0.164 Sum_probs=55.2
Q ss_pred HHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhH
Q psy17792 37 LSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLG 101 (116)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~ 101 (116)
.+..+++......|.|...++.|++..+.+....+..+..+++.+++|+++||.+|++....+..
T Consensus 9 yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~ 73 (77)
T PF12832_consen 9 YFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL 73 (77)
T ss_pred HHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence 34445555667778888999999999999999999999999999999999999999988765544
No 38
>PRK12382 putative transporter; Provisional
Probab=98.92 E-value=1.7e-08 Score=66.50 Aligned_cols=62 Identities=11% Similarity=-0.030 Sum_probs=50.3
Q ss_pred hhhHHhHHH-HHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHH
Q psy17792 45 NAVFYYSTA-LFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIF 106 (116)
Q Consensus 45 ~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~ 106 (116)
.......|. +.+++|.+..+.++......+...++.++.|+++||+|||+++..+.+...++
T Consensus 32 ~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~ 94 (392)
T PRK12382 32 GLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLA 94 (392)
T ss_pred HHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHH
Confidence 333344454 45789999999999999999999999999999999999999998876655443
No 39
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=98.92 E-value=1.5e-08 Score=68.36 Aligned_cols=79 Identities=13% Similarity=0.027 Sum_probs=64.6
Q ss_pred HHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHH
Q psy17792 33 IVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFIT 111 (116)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~ 111 (116)
+....+.............|.+.+++|.+..+..+......++..++.++.|+++||+|||+++..+..+..+.....+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 85 (485)
T TIGR00711 7 LMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCG 85 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHh
Confidence 3344444555556677788999999999999999999999999999999999999999999999988877776665544
No 40
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.92 E-value=1.7e-08 Score=65.67 Aligned_cols=76 Identities=18% Similarity=0.055 Sum_probs=61.3
Q ss_pred HHHHhhchhhhHHhHHH-HHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHH
Q psy17792 37 LSQQFSGINAVFYYSTA-LFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITI 112 (116)
Q Consensus 37 ~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~ 112 (116)
++...........+.|. +.+++|.+..+..+......++..++.++.|+++||+|||+.+..+.+...+..+..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~ 86 (366)
T TIGR00886 10 FFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGL 86 (366)
T ss_pred HHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence 33334444556667774 77889999999999999999999999999999999999999999888777776665544
No 41
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=98.91 E-value=2.4e-08 Score=66.22 Aligned_cols=86 Identities=9% Similarity=0.025 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHH
Q psy17792 26 RKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFI 105 (116)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~ 105 (116)
|+.........+......+ ......|.+.+++|.++.+..+......+...++.++.|.++||+|||+.+..+.++.++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~ 97 (394)
T PRK10213 19 WSAVFSVAFCVACLIIVEF-LPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTL 97 (394)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHH
Confidence 5444433333333333222 333356778889999999988888889999999999999999999999999988888777
Q ss_pred HHHHHHH
Q psy17792 106 FSIFITI 112 (116)
Q Consensus 106 ~~~~~~~ 112 (116)
..+..+.
T Consensus 98 ~~~~~~~ 104 (394)
T PRK10213 98 SCLLVSF 104 (394)
T ss_pred HHHHHHH
Confidence 6655543
No 42
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=98.91 E-value=1.7e-08 Score=65.73 Aligned_cols=62 Identities=15% Similarity=0.033 Sum_probs=47.5
Q ss_pred hhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhccc-chhHHhhhhHHHHHH
Q psy17792 45 NAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMG-RRTLHLYGLGGMFIF 106 (116)
Q Consensus 45 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~g-rr~~~~~~~~~~~~~ 106 (116)
.....+.|.+.++.|.+..+.........++..++.++.+++.||++ ||+....+.....++
T Consensus 214 ~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~ 276 (355)
T TIGR00896 214 YSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVG 276 (355)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Confidence 34455678778888998888888888899999999999999999994 555555555444443
No 43
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=98.91 E-value=1.4e-08 Score=65.92 Aligned_cols=58 Identities=16% Similarity=-0.036 Sum_probs=46.1
Q ss_pred HHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHH
Q psy17792 51 STALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSI 108 (116)
Q Consensus 51 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~ 108 (116)
.+.+.++.|.+..+.........+...++.++.++++||+|||+.+..+.....+...
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~ 285 (377)
T TIGR00890 228 YKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMA 285 (377)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 3445677888877777888888999999999999999999999988777665555443
No 44
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=98.91 E-value=1.9e-08 Score=66.68 Aligned_cols=56 Identities=11% Similarity=-0.012 Sum_probs=45.8
Q ss_pred hchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHh
Q psy17792 42 SGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHL 97 (116)
Q Consensus 42 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~ 97 (116)
.+......+.|.+.++.|.+..+.........++..++.+..|+++||+|||+...
T Consensus 236 ~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~ 291 (402)
T TIGR00897 236 IGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVR 291 (402)
T ss_pred HHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 34455566778888889999888777777788899999999999999999988653
No 45
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=98.91 E-value=2.5e-08 Score=67.69 Aligned_cols=83 Identities=16% Similarity=0.153 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHhhchhhhHHhHHHHH-hh--cCCCcchhHHHHHHHHHHHHHHHHHHHHhhhc-ccchhHHhhhhHHHH
Q psy17792 29 LIIGIVMQLSQQFSGINAVFYYSTALF-ES--SGLSEKTAKFTTIGIGAVMVTMTIISIPLMDR-MGRRTLHLYGLGGMF 104 (116)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr-~grr~~~~~~~~~~~ 104 (116)
........++..++. +....+.|.++ ++ +|.+..+.........+...++.+++|+++|| +|||+++..+.++.+
T Consensus 12 ~~~l~~~~~~~~~~~-~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~ 90 (475)
T TIGR00924 12 LFTLFFVELWERFSY-YGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLM 90 (475)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHH
Confidence 333333334444444 44444455554 44 79999999999999999999999999999999 899999999888777
Q ss_pred HHHHHHHH
Q psy17792 105 IFSIFITI 112 (116)
Q Consensus 105 ~~~~~~~~ 112 (116)
+....++.
T Consensus 91 ~g~~~~~~ 98 (475)
T TIGR00924 91 LGHFMLAM 98 (475)
T ss_pred HHHHHHHh
Confidence 76665544
No 46
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=98.90 E-value=2.7e-08 Score=65.65 Aligned_cols=93 Identities=17% Similarity=0.201 Sum_probs=69.6
Q ss_pred hhhhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHHh-hcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccch
Q psy17792 15 SMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFE-SSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRR 93 (116)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr 93 (116)
.++.++++++.|. +.+.++..+.++.....++|.+++ +.|.+..++..........+...-+.+|+++||+|.+
T Consensus 210 ~~~~v~~~~~~W~-----lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~ 284 (417)
T COG2223 210 QLKAVFSNKDTWL-----LSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGR 284 (417)
T ss_pred HHHHHhcCcchHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccch
Confidence 3556666654443 444566667777777767776554 6899998888888888888888888999999999999
Q ss_pred hHHhhhhHHHHHHHHHHHH
Q psy17792 94 TLHLYGLGGMFIFSIFITI 112 (116)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~ 112 (116)
|+......+++++......
T Consensus 285 rv~~~~f~~~~~~~~~l~~ 303 (417)
T COG2223 285 RVTLAVFVGMALAAALLSL 303 (417)
T ss_pred hHHHHHHHHHHHHHHHHHc
Confidence 9988887777776665543
No 47
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=98.90 E-value=4.4e-08 Score=64.72 Aligned_cols=76 Identities=17% Similarity=0.091 Sum_probs=55.2
Q ss_pred HHHHHhhchhhhHHhHHHHHhhcCCCcchh-----HHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHH
Q psy17792 36 QLSQQFSGINAVFYYSTALFESSGLSEKTA-----KFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFI 110 (116)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~ 110 (116)
..+....+......+.|.+.+++|.+..+. ........+...++.++.|+++||+|||+.+..+.....+.....
T Consensus 22 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 101 (408)
T PRK09874 22 GCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLM 101 (408)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHH
Confidence 333344444555667788888888886543 456667778889999999999999999999988776666655444
Q ss_pred H
Q psy17792 111 T 111 (116)
Q Consensus 111 ~ 111 (116)
.
T Consensus 102 ~ 102 (408)
T PRK09874 102 G 102 (408)
T ss_pred H
Confidence 3
No 48
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=98.90 E-value=3.7e-08 Score=65.91 Aligned_cols=80 Identities=10% Similarity=-0.114 Sum_probs=55.2
Q ss_pred HHHHHHHHhhchhhhHHhHHHHHhhcC---CCcchh---HHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHH
Q psy17792 33 IVMQLSQQFSGINAVFYYSTALFESSG---LSEKTA---KFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIF 106 (116)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~ 106 (116)
..+..+..........+..|.+.++++ .+..+. ........++..++++++|+++||+|||+++..+....++.
T Consensus 27 ~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~ 106 (432)
T PRK10406 27 ASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFG 106 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 334444555666667778888888764 333332 22233445566699999999999999999999988888777
Q ss_pred HHHHHH
Q psy17792 107 SIFITI 112 (116)
Q Consensus 107 ~~~~~~ 112 (116)
.+..++
T Consensus 107 ~~~~~~ 112 (432)
T PRK10406 107 SLVIAC 112 (432)
T ss_pred HHHHhh
Confidence 666544
No 49
>PRK12307 putative sialic acid transporter; Provisional
Probab=98.89 E-value=4.1e-08 Score=65.31 Aligned_cols=90 Identities=19% Similarity=0.166 Sum_probs=58.6
Q ss_pred hhhhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchh
Q psy17792 15 SMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRT 94 (116)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~ 94 (116)
++++.++++..+... .... ..+...........+.|.+.++.|.+..+.........++..++.++.+++.||+|||+
T Consensus 220 ~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~ 297 (426)
T PRK12307 220 SMKGLFNRAQFPLTL-CVFI-VLFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKK 297 (426)
T ss_pred HHHHHHhhchHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 355667665443222 2122 22222222223445667777778888877777777788899999999999999999999
Q ss_pred HHhhhhHHHHHH
Q psy17792 95 LHLYGLGGMFIF 106 (116)
Q Consensus 95 ~~~~~~~~~~~~ 106 (116)
.+..+.+...+.
T Consensus 298 ~~~~~~~~~~~~ 309 (426)
T PRK12307 298 TFSIGLLMSFLF 309 (426)
T ss_pred HHHHHHHHHHHH
Confidence 887776554443
No 50
>TIGR00901 2A0125 AmpG-related permease.
Probab=98.89 E-value=3.3e-08 Score=64.41 Aligned_cols=93 Identities=10% Similarity=0.017 Sum_probs=56.5
Q ss_pred hhhhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHH-HHHHHHHHHHHHhhhcccch
Q psy17792 15 SMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIG-AVMVTMTIISIPLMDRMGRR 93 (116)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~l~dr~grr 93 (116)
+++++++++..++ ........++.+... .....+.|.+.++.|.+..+......... +...++.++++++.||+|||
T Consensus 198 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~ 275 (356)
T TIGR00901 198 PIREFFQRKNMIQ-ALLLLLLIVLYKLGD-SAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNIL 275 (356)
T ss_pred HHHHHHHhcCchH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 4455565543222 222222233333333 33333445555668888877666555444 56789999999999999999
Q ss_pred hHHhhhhHHHHHHHHH
Q psy17792 94 TLHLYGLGGMFIFSIF 109 (116)
Q Consensus 94 ~~~~~~~~~~~~~~~~ 109 (116)
+.+..+.++.++....
T Consensus 276 ~~l~~~~~~~~~~~~~ 291 (356)
T TIGR00901 276 YALLLFGIVQALTNAG 291 (356)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9887777665554443
No 51
>PRK10133 L-fucose transporter; Provisional
Probab=98.89 E-value=4.8e-08 Score=65.68 Aligned_cols=67 Identities=12% Similarity=-0.039 Sum_probs=59.2
Q ss_pred hhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHH
Q psy17792 44 INAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFI 110 (116)
Q Consensus 44 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~ 110 (116)
......+.|.+.+++|.+..+.++......++..++.++.|.++||+|||+++..+..+..+..+.+
T Consensus 42 ~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~ 108 (438)
T PRK10133 42 NNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALF 108 (438)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 3566778899988999999999999999999999999999999999999999999888877776553
No 52
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=98.88 E-value=4.7e-08 Score=64.66 Aligned_cols=64 Identities=20% Similarity=0.251 Sum_probs=50.9
Q ss_pred chhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHH
Q psy17792 43 GINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIF 106 (116)
Q Consensus 43 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~ 106 (116)
.......+.|.+.++.|.+..+.........++..++.++.|++.||+|||+.+..+.....+.
T Consensus 235 ~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~ 298 (406)
T PRK11551 235 VLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILAS 298 (406)
T ss_pred HHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3344555678888888998888888888888999999999999999999999887655444433
No 53
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.86 E-value=5.7e-08 Score=66.36 Aligned_cols=93 Identities=15% Similarity=0.124 Sum_probs=60.7
Q ss_pred hhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhc-ccchhH
Q psy17792 17 SELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDR-MGRRTL 95 (116)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr-~grr~~ 95 (116)
.+.++++ +.....+...++...+.+....+..+++.+++|.+..+................+++|+++|| +|||+.
T Consensus 14 ~~~~~~p---~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~ 90 (500)
T PRK09584 14 LNAFKQP---KAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRV 90 (500)
T ss_pred hhhhcCC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH
Confidence 3455544 334444444555555554444555555557899988877666665555555556789999999 599999
Q ss_pred HhhhhHHHHHHHHHHHH
Q psy17792 96 HLYGLGGMFIFSIFITI 112 (116)
Q Consensus 96 ~~~~~~~~~~~~~~~~~ 112 (116)
+..+.++..+....+++
T Consensus 91 ~~~g~~~~~ig~~l~~~ 107 (500)
T PRK09584 91 IMLGAIVLAIGYALVAW 107 (500)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99888777766555543
No 54
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=98.86 E-value=7.6e-08 Score=63.26 Aligned_cols=56 Identities=21% Similarity=0.033 Sum_probs=45.0
Q ss_pred HHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHH
Q psy17792 48 FYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGM 103 (116)
Q Consensus 48 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~ 103 (116)
.++.+++.++.|.+..+.........++..++.++.++++||+|||+.+..+....
T Consensus 259 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~ 314 (405)
T TIGR00891 259 DLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAG 314 (405)
T ss_pred hhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHH
Confidence 34444555568898888888888889999999999999999999999887665543
No 55
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=98.85 E-value=1.5e-08 Score=67.56 Aligned_cols=63 Identities=13% Similarity=-0.147 Sum_probs=48.8
Q ss_pred HHhHHHHHhhcCCC--------cchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHH
Q psy17792 48 FYYSTALFESSGLS--------EKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFI 110 (116)
Q Consensus 48 ~~~~~~~~~~~g~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~ 110 (116)
....|.+..+.+.+ ..+..+......++..++.++.|+++||+|||++++.+.++..+.....
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~ 118 (481)
T TIGR00879 48 GGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILM 118 (481)
T ss_pred hhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 33445555555555 6778888899999999999999999999999999988777666655544
No 56
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=98.85 E-value=4.4e-08 Score=64.92 Aligned_cols=67 Identities=19% Similarity=0.156 Sum_probs=54.3
Q ss_pred hhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHH
Q psy17792 45 NAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFIT 111 (116)
Q Consensus 45 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~ 111 (116)
.......|.+.+++|.+..+..+......++..++.++.|.++||+|||+++..+.....++.....
T Consensus 30 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~ 96 (406)
T PRK15402 30 DMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAIL 96 (406)
T ss_pred hhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence 3444455677789999998888888888999999999999999999999999888776666655443
No 57
>PRK10091 MFS transport protein AraJ; Provisional
Probab=98.85 E-value=4.1e-08 Score=64.72 Aligned_cols=69 Identities=17% Similarity=0.069 Sum_probs=58.4
Q ss_pred hhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHHH
Q psy17792 45 NAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITIS 113 (116)
Q Consensus 45 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~~ 113 (116)
.......|.+.+++|.+..+.++......++..++.++.|++.||+|||+++..+....++..+..+..
T Consensus 20 ~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~ 88 (382)
T PRK10091 20 FGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS 88 (382)
T ss_pred HHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh
Confidence 345557788889999999998999999999999999999999999999999998887777766655543
No 58
>PRK09528 lacY galactoside permease; Reviewed
Probab=98.85 E-value=5.4e-08 Score=64.85 Aligned_cols=56 Identities=14% Similarity=0.214 Sum_probs=45.9
Q ss_pred hHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHH
Q psy17792 47 VFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGG 102 (116)
Q Consensus 47 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~ 102 (116)
..++..++.++.|.+..+.+.......+...++.++.|+++||+|||++++.+..+
T Consensus 30 ~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~ 85 (420)
T PRK09528 30 FSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISG 85 (420)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 33444444455999999999999999999999999999999999999988765443
No 59
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=98.84 E-value=5.8e-08 Score=65.55 Aligned_cols=68 Identities=19% Similarity=0.088 Sum_probs=54.9
Q ss_pred hhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHH
Q psy17792 45 NAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITI 112 (116)
Q Consensus 45 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~ 112 (116)
.....+.|.+.+++|.+..+..+......+...++.++.|+++||+|||++++.+.++..+..+..+.
T Consensus 36 ~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~ 103 (455)
T TIGR00892 36 KAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASF 103 (455)
T ss_pred cchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHH
Confidence 33455678888999999988888888888888889999999999999999998887666665555443
No 60
>PRK10489 enterobactin exporter EntS; Provisional
Probab=98.84 E-value=1.7e-08 Score=67.15 Aligned_cols=63 Identities=16% Similarity=0.062 Sum_probs=51.6
Q ss_pred hhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHH
Q psy17792 44 INAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIF 106 (116)
Q Consensus 44 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~ 106 (116)
........|.+.++.+.+..+.++......+...++.++.|+++||+|||+++..+....++.
T Consensus 33 ~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~ 95 (417)
T PRK10489 33 LGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLG 95 (417)
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHH
Confidence 345566778888888888888899999999999999999999999999999887765544433
No 61
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=98.83 E-value=5.4e-08 Score=64.58 Aligned_cols=61 Identities=15% Similarity=0.066 Sum_probs=51.2
Q ss_pred HHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHH
Q psy17792 48 FYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSI 108 (116)
Q Consensus 48 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~ 108 (116)
..+.|.+.++.|.+..+.........+...++.++.|++.||+|||+++..+.....+...
T Consensus 33 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~ 93 (402)
T TIGR00897 33 QGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHA 93 (402)
T ss_pred HHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 3345556688999999999999999999999999999999999999999887776665543
No 62
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=98.83 E-value=5.7e-08 Score=64.22 Aligned_cols=90 Identities=14% Similarity=0.124 Sum_probs=65.4
Q ss_pred hhhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhH
Q psy17792 16 MSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTL 95 (116)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~ 95 (116)
..+++|++..+.. .....+.....+....|..|++.+..|++.+...+....+++++++|+.++|+++|| +.|+.
T Consensus 204 ~~~~l~~p~v~~~----l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~ 278 (394)
T COG2814 204 LLRLLRRPGVLLG----LLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRA 278 (394)
T ss_pred HHHHhcCchHHHH----HHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhH
Confidence 4566666644432 222333333344556788888888899999999999999999999999999999999 88888
Q ss_pred HhhhhHHHHHHHHHH
Q psy17792 96 HLYGLGGMFIFSIFI 110 (116)
Q Consensus 96 ~~~~~~~~~~~~~~~ 110 (116)
+.......++....+
T Consensus 279 l~~~~~l~a~~~l~l 293 (394)
T COG2814 279 LIAALLLLALALLAL 293 (394)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777665555554443
No 63
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=98.83 E-value=1.7e-11 Score=81.94 Aligned_cols=95 Identities=41% Similarity=0.655 Sum_probs=75.7
Q ss_pred hhhhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchh
Q psy17792 15 SMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRT 94 (116)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~ 94 (116)
+++++++++.+++++...+.+.++.+..+++...+|.|.+.++.+.+.. ........+...++.+++.++.||+|||+
T Consensus 240 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~ 317 (451)
T PF00083_consen 240 SWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRK 317 (451)
T ss_pred eeeeccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccccccc
Confidence 4677887766677787778888888888888888999999988887776 34555666778888888899999999999
Q ss_pred HHhhhhHHHHHHHHHHH
Q psy17792 95 LHLYGLGGMFIFSIFIT 111 (116)
Q Consensus 95 ~~~~~~~~~~~~~~~~~ 111 (116)
.++.+..+++++...++
T Consensus 318 ~~i~~~~~~~~~~~~~~ 334 (451)
T PF00083_consen 318 LLIIGLLLMAICSLILG 334 (451)
T ss_pred ccccccccccccccccc
Confidence 99988877776665553
No 64
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=98.82 E-value=4.6e-08 Score=64.79 Aligned_cols=65 Identities=12% Similarity=0.082 Sum_probs=51.3
Q ss_pred chhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHH
Q psy17792 43 GINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFS 107 (116)
Q Consensus 43 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~ 107 (116)
++.....+.|.++++.|.+..+.........+++.++.++.+++.||+|||+....+..+..+..
T Consensus 220 ~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~ 284 (393)
T PRK09705 220 GYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGF 284 (393)
T ss_pred HHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Confidence 33445556676677789998888888888999999999999999999999998877665544443
No 65
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=98.82 E-value=2e-08 Score=65.24 Aligned_cols=68 Identities=18% Similarity=0.131 Sum_probs=58.2
Q ss_pred hhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHH
Q psy17792 45 NAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITI 112 (116)
Q Consensus 45 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~ 112 (116)
....+..|++.+++|.+..+.++......++..++.++.|+++||+|||+++..+.++..+..+....
T Consensus 12 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 79 (379)
T TIGR00881 12 KNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGF 79 (379)
T ss_pred HhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHH
Confidence 44556678888999999999999999999999999999999999999999999888777766665544
No 66
>PRK15075 citrate-proton symporter; Provisional
Probab=98.81 E-value=8.2e-08 Score=64.32 Aligned_cols=86 Identities=15% Similarity=0.031 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHH-HH-----HHHHHHHHHHHHHHHhhhcccchhHHhhhhH
Q psy17792 28 PLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFT-TI-----GIGAVMVTMTIISIPLMDRMGRRTLHLYGLG 101 (116)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~-----~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~ 101 (116)
+.....++..+..........+..|.+.++++.+..+.... .. ...+...+++++.|+++||+|||+.++.+..
T Consensus 15 ~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~ 94 (434)
T PRK15075 15 RAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLS 94 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHH
Confidence 34555666677777777788899999999998876553222 11 1123335788999999999999999999888
Q ss_pred HHHHHHHHHHHH
Q psy17792 102 GMFIFSIFITIS 113 (116)
Q Consensus 102 ~~~~~~~~~~~~ 113 (116)
+..+..+..+++
T Consensus 95 ~~~~~~~l~~~~ 106 (434)
T PRK15075 95 IMASGTLLIAFV 106 (434)
T ss_pred HHHHHHHHHHhC
Confidence 877776666544
No 67
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=98.80 E-value=1.2e-07 Score=62.65 Aligned_cols=62 Identities=18% Similarity=0.229 Sum_probs=48.5
Q ss_pred hchhhhHHhHH-HHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHH
Q psy17792 42 SGINAVFYYST-ALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGM 103 (116)
Q Consensus 42 ~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~ 103 (116)
.+......+.| ++.++.|.+..+.........+...++.++.|+++||+|||+.++.+....
T Consensus 16 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~ 78 (396)
T TIGR00882 16 FIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGL 78 (396)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 33344444444 445568999999999999999999999999999999999999987654433
No 68
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=98.78 E-value=6.6e-08 Score=64.04 Aligned_cols=69 Identities=16% Similarity=0.021 Sum_probs=61.2
Q ss_pred hhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHHH
Q psy17792 45 NAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITIS 113 (116)
Q Consensus 45 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~~ 113 (116)
.......|.+.+++|.+..+.++......++..++.++.|+++||+|||+++..+..+.+++.+..+++
T Consensus 26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a 94 (393)
T PRK09705 26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELY 94 (393)
T ss_pred hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHC
Confidence 345567789999999999999999999999999999999999999999999999999988888777654
No 69
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=98.78 E-value=2.5e-07 Score=62.64 Aligned_cols=85 Identities=11% Similarity=0.003 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHhhchhhhHHhHHHHHh-hcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHH
Q psy17792 28 PLIIGIVMQLSQQFSGINAVFYYSTALFE-SSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIF 106 (116)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~ 106 (116)
+.+....+.+...+..........+.+.+ ++|++..+..+...+..+...++.++.|++.||+|.|+++..+.+...+.
T Consensus 34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~ 113 (462)
T PRK15034 34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIP 113 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 44444555555555555555555555555 79999999999999899899999899999999999999998888777666
Q ss_pred HHHHHH
Q psy17792 107 SIFITI 112 (116)
Q Consensus 107 ~~~~~~ 112 (116)
....++
T Consensus 114 ~~~~~~ 119 (462)
T PRK15034 114 CVWLGI 119 (462)
T ss_pred HHHHHH
Confidence 665554
No 70
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.78 E-value=1.2e-07 Score=61.16 Aligned_cols=67 Identities=21% Similarity=0.132 Sum_probs=54.9
Q ss_pred hhhHHhHH-HHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHH
Q psy17792 45 NAVFYYST-ALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFIT 111 (116)
Q Consensus 45 ~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~ 111 (116)
.......| .+.+++|.+..+..+......+...++.++.|+++||+|||+++..+.++.++......
T Consensus 13 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~ 80 (352)
T PF07690_consen 13 SIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLA 80 (352)
T ss_dssp HHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhh
Confidence 34455566 77788999999999999999999999999999999999999998888887777744333
No 71
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=98.77 E-value=1.2e-07 Score=62.84 Aligned_cols=65 Identities=15% Similarity=0.130 Sum_probs=47.5
Q ss_pred HHHHHHHHhhchhhhHHhHHHHH-hhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcc--cchhHHhh
Q psy17792 33 IVMQLSQQFSGINAVFYYSTALF-ESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRM--GRRTLHLY 98 (116)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~--grr~~~~~ 98 (116)
+....+....=+ .+.-|.|.++ +..|++..++.+....+=.++++|++++||++||+ |||.+...
T Consensus 258 a~a~vfvYivR~-gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~ 325 (448)
T COG2271 258 ALANVFVYVVRY-GINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMAL 325 (448)
T ss_pred HHHHHHHHHHHH-HHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHH
Confidence 333444444443 4455556544 56789999999999999999999999999999997 67765543
No 72
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=98.77 E-value=1.7e-07 Score=63.83 Aligned_cols=85 Identities=13% Similarity=-0.029 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcch-hHH-----HHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHH
Q psy17792 29 LIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKT-AKF-----TTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGG 102 (116)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~-----~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~ 102 (116)
.+....+..+..........+..|.+.++++.+.++ ... ......++..++.+++|+++||+|||+++..+.++
T Consensus 17 ~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l 96 (490)
T PRK10642 17 AITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVI 96 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 444444555556666667777888887776533322 111 13445677889999999999999999999999988
Q ss_pred HHHHHHHHHHH
Q psy17792 103 MFIFSIFITIS 113 (116)
Q Consensus 103 ~~~~~~~~~~~ 113 (116)
.+++.+..+++
T Consensus 97 ~~i~~~~~a~~ 107 (490)
T PRK10642 97 MSISTFCIGLI 107 (490)
T ss_pred HHHHHHHHHhc
Confidence 88877776654
No 73
>TIGR00895 2A0115 benzoate transport.
Probab=98.77 E-value=1.8e-07 Score=61.30 Aligned_cols=59 Identities=24% Similarity=0.131 Sum_probs=47.3
Q ss_pred HhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhh
Q psy17792 40 QFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLY 98 (116)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~ 98 (116)
..........+.|++.++.|.+..+.........++..++.++.++++||+|||+....
T Consensus 262 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 320 (398)
T TIGR00895 262 LLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALL 320 (398)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 33344556667788888899998888888888899999999999999999999955443
No 74
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=98.76 E-value=1.2e-07 Score=60.91 Aligned_cols=73 Identities=22% Similarity=0.159 Sum_probs=59.6
Q ss_pred HhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHH
Q psy17792 40 QFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITI 112 (116)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~ 112 (116)
...+........|.+.++.|.+..+..+......+...++.++.|+++||+|||+.+..+.....+.......
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~ 83 (352)
T cd06174 11 SGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAF 83 (352)
T ss_pred HHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHH
Confidence 3334455666778888888999999999999999999999999999999999999988888777766655443
No 75
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=98.76 E-value=2.1e-07 Score=66.26 Aligned_cols=45 Identities=20% Similarity=0.208 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHH
Q psy17792 68 TTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITI 112 (116)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~ 112 (116)
...+..++.+++.++.++++||+|||++++.+.++.+++++++++
T Consensus 600 ~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~ 644 (742)
T TIGR01299 600 VNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSF 644 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 355667888999999999999999999998888777776655443
No 76
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=98.76 E-value=1.3e-07 Score=63.80 Aligned_cols=52 Identities=13% Similarity=-0.001 Sum_probs=44.1
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHH
Q psy17792 59 GLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFI 110 (116)
Q Consensus 59 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~ 110 (116)
+.+..+..+......++..++.++.|+++||+|||+++..+..+..++....
T Consensus 51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~ 102 (479)
T PRK10077 51 SAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGS 102 (479)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 6777788888999999999999999999999999999998877766554433
No 77
>PRK03633 putative MFS family transporter protein; Provisional
Probab=98.76 E-value=1.2e-07 Score=62.51 Aligned_cols=58 Identities=14% Similarity=0.077 Sum_probs=45.9
Q ss_pred HHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHH
Q psy17792 48 FYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFI 105 (116)
Q Consensus 48 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~ 105 (116)
..+.|.+.++.|.+..+.........+...++.++.+++.||+|||+.+..+.....+
T Consensus 220 ~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~ 277 (381)
T PRK03633 220 YGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVIL 277 (381)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHH
Confidence 3456777777888887777777778888999999999999999999988766554444
No 78
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=98.76 E-value=1.1e-07 Score=61.53 Aligned_cols=66 Identities=11% Similarity=-0.024 Sum_probs=53.9
Q ss_pred hhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHH
Q psy17792 45 NAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFI 110 (116)
Q Consensus 45 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~ 110 (116)
.......|.+..+.+.+..+..+......+...++.++.|+++||+|||+++..+..+..+.....
T Consensus 16 ~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~ 81 (365)
T TIGR00900 16 AITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVL 81 (365)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHH
Confidence 445556677778889988898999999999999999999999999999999988776655544443
No 79
>PRK11043 putative transporter; Provisional
Probab=98.75 E-value=1.8e-07 Score=61.92 Aligned_cols=62 Identities=21% Similarity=0.103 Sum_probs=51.6
Q ss_pred hHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHH
Q psy17792 50 YSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFIT 111 (116)
Q Consensus 50 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~ 111 (116)
..|.+.+++|.+..+..+......++..++.++.|+++||+|||+.+..+.....+......
T Consensus 28 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 89 (401)
T PRK11043 28 AFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGML 89 (401)
T ss_pred hHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHH
Confidence 34556788999999999999999999999999999999999999999887766665554443
No 80
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.74 E-value=1e-07 Score=62.14 Aligned_cols=60 Identities=22% Similarity=0.158 Sum_probs=44.6
Q ss_pred hhHHhHHHHH-hhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHH
Q psy17792 46 AVFYYSTALF-ESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFI 105 (116)
Q Consensus 46 ~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~ 105 (116)
....+.|.+. +..|.+..+.........+...++.++.++++||+|||+....+......
T Consensus 243 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~ 303 (366)
T TIGR00886 243 GVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAM 303 (366)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHH
Confidence 3344445555 45788888888788888888999999999999999998877655544333
No 81
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=98.74 E-value=1.4e-07 Score=62.17 Aligned_cols=92 Identities=14% Similarity=0.010 Sum_probs=61.6
Q ss_pred hhhhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchh
Q psy17792 15 SMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRT 94 (116)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~ 94 (116)
+.++++|+++.+.- ....++.+.. ......+.|.+.++.|.++.+.........+...++..+.+++.||+|+|+
T Consensus 197 ~~~~~l~~~~~~~~----l~~~~l~~~~-~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~ 271 (382)
T TIGR00902 197 AFIALLKNPMNLRF----LAAVCLIQGA-HAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARD 271 (382)
T ss_pred hHHHHHcChHHHHH----HHHHHHHHHH-HHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHH
Confidence 35566666543321 2222222222 233333445556778999988888777778888888899999999999999
Q ss_pred HHhhhhHHHHHHHHHHH
Q psy17792 95 LHLYGLGGMFIFSIFIT 111 (116)
Q Consensus 95 ~~~~~~~~~~~~~~~~~ 111 (116)
.+..+.+...+.....+
T Consensus 272 ~l~~~~~~~~~~~~~~~ 288 (382)
T TIGR00902 272 LLLISAIACVGRWAIIG 288 (382)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99888877776655544
No 82
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.74 E-value=2.4e-07 Score=61.85 Aligned_cols=66 Identities=12% Similarity=0.040 Sum_probs=57.3
Q ss_pred hhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHH
Q psy17792 45 NAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFI 110 (116)
Q Consensus 45 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~ 110 (116)
.......|.+.+++|.+..+.++......++..+++++.+++.||+|||+.+..+..+.++....+
T Consensus 20 ~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~ 85 (410)
T TIGR00885 20 DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLF 85 (410)
T ss_pred HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 445567788899999999999999999999999999999999999999999999887777665543
No 83
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=98.73 E-value=1.4e-07 Score=62.91 Aligned_cols=66 Identities=15% Similarity=0.020 Sum_probs=54.3
Q ss_pred hHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHH
Q psy17792 47 VFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITI 112 (116)
Q Consensus 47 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~ 112 (116)
...-.|.+.+++|.+.....+......++..++.++.|+++||+|||+++..+..+..++....+.
T Consensus 35 ~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~ 100 (413)
T PRK15403 35 IQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLF 100 (413)
T ss_pred hccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHH
Confidence 344455677889999988888888889999999999999999999999999888777766655544
No 84
>PRK03699 putative transporter; Provisional
Probab=98.73 E-value=1.5e-07 Score=62.30 Aligned_cols=63 Identities=8% Similarity=-0.048 Sum_probs=49.1
Q ss_pred hhhhHHhHHHHH-hhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHH
Q psy17792 44 INAVFYYSTALF-ESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIF 106 (116)
Q Consensus 44 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~ 106 (116)
......|.|.+. ++.|.+..+.........++..++.++.++++||++||+.+.....+..+.
T Consensus 221 ~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~ 284 (394)
T PRK03699 221 QLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVL 284 (394)
T ss_pred HHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHH
Confidence 344555667666 567999888888888888899999999999999999999887665544443
No 85
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=98.73 E-value=1.2e-07 Score=61.97 Aligned_cols=61 Identities=15% Similarity=0.105 Sum_probs=46.9
Q ss_pred hhHHhHHHHH-hhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHH
Q psy17792 46 AVFYYSTALF-ESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIF 106 (116)
Q Consensus 46 ~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~ 106 (116)
....+.|.+. ++.|.++.+.........+...++.++.+++.||+|||+....+.....+.
T Consensus 224 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 285 (385)
T TIGR00710 224 AFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVS 285 (385)
T ss_pred HHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 3344456555 468888888888888888999999999999999999999887665554443
No 86
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=98.72 E-value=5.3e-08 Score=65.31 Aligned_cols=82 Identities=17% Similarity=0.144 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHH
Q psy17792 28 PLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFS 107 (116)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~ 107 (116)
+.+....+.............+..|++.+ .|.+..+..+......++..++.++.|+++||+|||+++..+.+..++..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~ 105 (438)
T TIGR00712 27 QVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVM 105 (438)
T ss_pred HHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHH
Confidence 34333333333333333334556677665 59999999999999999999999999999999999998888766666554
Q ss_pred HHH
Q psy17792 108 IFI 110 (116)
Q Consensus 108 ~~~ 110 (116)
...
T Consensus 106 ~~~ 108 (438)
T TIGR00712 106 LLM 108 (438)
T ss_pred HHH
Confidence 443
No 87
>TIGR00893 2A0114 d-galactonate transporter.
Probab=98.71 E-value=8.8e-08 Score=62.39 Aligned_cols=70 Identities=17% Similarity=0.062 Sum_probs=57.8
Q ss_pred chhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHH
Q psy17792 43 GINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITI 112 (116)
Q Consensus 43 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~ 112 (116)
.........|.+.+++|.+..+..+......+...++.++.|+++||+|||+++..+.++..+.....+.
T Consensus 9 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~ 78 (399)
T TIGR00893 9 DRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAF 78 (399)
T ss_pred HHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHH
Confidence 3345566778888999999999999999999999999999999999999999998887766665554443
No 88
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=98.71 E-value=2.3e-07 Score=61.19 Aligned_cols=91 Identities=20% Similarity=0.060 Sum_probs=58.1
Q ss_pred chhhhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccch
Q psy17792 14 ISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRR 93 (116)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr 93 (116)
.++++.+|++..+.-.+. .++.+.. ......+.|.+.++.|.+..+.........+...+..++.+++.||+|+|
T Consensus 196 ~~~~~i~~~~~~~~~~~~----~~l~~~~-~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~ 270 (382)
T PRK11128 196 PAWKALLKEPTVWRFLLC----VSLLQGS-HAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSAR 270 (382)
T ss_pred chHHHHHcChhHHHHHHH----HHHHHHH-hHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Confidence 456777777644432221 1222222 12222233445567888887777777777778888889999999999999
Q ss_pred hHHhhhhHHHHHHHHH
Q psy17792 94 TLHLYGLGGMFIFSIF 109 (116)
Q Consensus 94 ~~~~~~~~~~~~~~~~ 109 (116)
+.+..+....++....
T Consensus 271 ~~l~~~~~~~~~~~~~ 286 (382)
T PRK11128 271 DLLLLSAICGVVRWGL 286 (382)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9988777666654433
No 89
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=98.71 E-value=2.2e-07 Score=61.60 Aligned_cols=61 Identities=7% Similarity=0.089 Sum_probs=50.5
Q ss_pred HhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHH
Q psy17792 49 YYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIF 109 (116)
Q Consensus 49 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~ 109 (116)
...+...+++|.+..+..+......+...+..++.|+++||+|||+++..+..+.++..+.
T Consensus 24 ~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~ 84 (393)
T PRK11195 24 FAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLL 84 (393)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHH
Confidence 3445557788888888888888999999999999999999999999999888776655544
No 90
>PRK10504 putative transporter; Provisional
Probab=98.70 E-value=4.9e-07 Score=61.08 Aligned_cols=65 Identities=17% Similarity=0.249 Sum_probs=49.7
Q ss_pred hhhhHHhHHHHHh-hcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHH
Q psy17792 44 INAVFYYSTALFE-SSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSI 108 (116)
Q Consensus 44 ~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~ 108 (116)
.....++.|++.+ ..|.++.+..+......+...++.++.+++.||+|||+++..+.++..+...
T Consensus 277 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~ 342 (471)
T PRK10504 277 SGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSL 342 (471)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHH
Confidence 3445567787777 4788888877777777777888889999999999999998877665554433
No 91
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.70 E-value=1.9e-07 Score=62.53 Aligned_cols=61 Identities=11% Similarity=0.037 Sum_probs=44.9
Q ss_pred HHHHHhh-cCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHH
Q psy17792 51 STALFES-SGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITI 112 (116)
Q Consensus 51 ~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~ 112 (116)
.+++.+. +|.+ ...........+...++.++.++++||+|+|+.+..+..+.++..+.+.+
T Consensus 248 ~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~ 309 (428)
T PF13347_consen 248 LPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFF 309 (428)
T ss_pred HHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHH
Confidence 3444443 3444 34456667788889999999999999999999999888877776665543
No 92
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=98.69 E-value=6.8e-07 Score=60.39 Aligned_cols=66 Identities=17% Similarity=0.161 Sum_probs=51.9
Q ss_pred hhhHHhHHHHHh-hcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHH
Q psy17792 45 NAVFYYSTALFE-SSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFI 110 (116)
Q Consensus 45 ~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~ 110 (116)
....++.|.+.+ ..|.++.+.........++..++.++.+++.||+|||+++..+..+..+....+
T Consensus 272 ~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~ 338 (485)
T TIGR00711 272 YGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWR 338 (485)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHH
Confidence 344456676665 478998888888888899999999999999999999999887776665554443
No 93
>PRK03545 putative arabinose transporter; Provisional
Probab=98.68 E-value=3.7e-07 Score=60.30 Aligned_cols=52 Identities=19% Similarity=0.174 Sum_probs=41.0
Q ss_pred hHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhh
Q psy17792 47 VFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLY 98 (116)
Q Consensus 47 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~ 98 (116)
..+..|++.+..|.+..+.........+...++.++.++++||+|||.....
T Consensus 225 ~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~ 276 (390)
T PRK03545 225 YSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLIA 276 (390)
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 3444555555678888888888888888999999999999999998876543
No 94
>PRK10133 L-fucose transporter; Provisional
Probab=98.68 E-value=4.3e-07 Score=61.15 Aligned_cols=59 Identities=12% Similarity=-0.009 Sum_probs=46.7
Q ss_pred HHhHHHHHh-hcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHH
Q psy17792 48 FYYSTALFE-SSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIF 106 (116)
Q Consensus 48 ~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~ 106 (116)
.+..+++.+ ..|.++.+.........++..++.++.+++.||+|||+++..+..+..+.
T Consensus 279 ~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~ 338 (438)
T PRK10133 279 SYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMAL 338 (438)
T ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 344445444 57999999999999999999999999999999999999887765554433
No 95
>PRK09528 lacY galactoside permease; Reviewed
Probab=98.68 E-value=2.5e-07 Score=61.72 Aligned_cols=52 Identities=10% Similarity=-0.019 Sum_probs=38.6
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHH
Q psy17792 59 GLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFI 110 (116)
Q Consensus 59 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~ 110 (116)
+.+..+.+.......+...++.++.|+++||+|||+.+..+..+..+.....
T Consensus 258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~ 309 (420)
T PRK09528 258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGS 309 (420)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHH
Confidence 4454555666677777888999999999999999998877766655544443
No 96
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=98.67 E-value=2.7e-07 Score=60.40 Aligned_cols=50 Identities=22% Similarity=0.246 Sum_probs=41.9
Q ss_pred HHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHH
Q psy17792 53 ALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGG 102 (116)
Q Consensus 53 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~ 102 (116)
++.+..|.++.+.........+...++.++.+++.||+|||+.+..+...
T Consensus 220 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~ 269 (377)
T PRK11102 220 VYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWI 269 (377)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 34455788888888888888899999999999999999999988766544
No 97
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=98.67 E-value=5.9e-07 Score=58.18 Aligned_cols=60 Identities=8% Similarity=-0.086 Sum_probs=47.9
Q ss_pred HhHHHHHhh-cCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHH
Q psy17792 49 YYSTALFES-SGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSI 108 (116)
Q Consensus 49 ~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~ 108 (116)
.+.|++.++ .|.+..+.........++..++.++.+++.||.|||+.+..+....++...
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 292 (365)
T TIGR00900 232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAIL 292 (365)
T ss_pred HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHH
Confidence 566777665 788888888888888999999999999999999999988776555544443
No 98
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=98.66 E-value=5.9e-07 Score=59.53 Aligned_cols=89 Identities=13% Similarity=0.032 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHH
Q psy17792 26 RKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFI 105 (116)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~ 105 (116)
+.+++......+...... ....-.+|.+.+++|.+..+++.....+..+..+++++...+.||+.||++++....++.+
T Consensus 12 ~~~l~aLa~~~F~igttE-fv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~ 90 (394)
T COG2814 12 WLALLALALAAFAIGTTE-FVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIV 90 (394)
T ss_pred hHHHHHHHHHHHHHHhHH-HHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 444444333334333333 3456677999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHc
Q psy17792 106 FSIFITISLL 115 (116)
Q Consensus 106 ~~~~~~~~~~ 115 (116)
+-++.+++.+
T Consensus 91 ~n~l~alAp~ 100 (394)
T COG2814 91 SNLLSALAPS 100 (394)
T ss_pred HHHHHHHhcc
Confidence 8888777655
No 99
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=98.65 E-value=5.6e-07 Score=59.87 Aligned_cols=76 Identities=9% Similarity=-0.011 Sum_probs=57.0
Q ss_pred HHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHH
Q psy17792 36 QLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFIT 111 (116)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~ 111 (116)
.++.....+....+..+++.++.|.+..+.+.......+......++.|+++||+|||+++..+.....+..+...
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~ 94 (400)
T PRK11646 19 NMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMA 94 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 3333333333344455556678899998888888888888888899999999999999999988877776665554
No 100
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=98.65 E-value=4.2e-07 Score=59.99 Aligned_cols=60 Identities=20% Similarity=0.108 Sum_probs=46.0
Q ss_pred hHHHH-HhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHH
Q psy17792 50 YSTAL-FESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIF 109 (116)
Q Consensus 50 ~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~ 109 (116)
+.|++ .++.|.+..+.........+...++.++.+++.||+|||+....+.....+....
T Consensus 225 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~ 285 (392)
T PRK10473 225 TSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGIT 285 (392)
T ss_pred hCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 34444 4567888877777778888899999999999999999999888776655544433
No 101
>PRK11043 putative transporter; Provisional
Probab=98.65 E-value=3.6e-07 Score=60.47 Aligned_cols=82 Identities=16% Similarity=0.116 Sum_probs=52.7
Q ss_pred chhhhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccch
Q psy17792 14 ISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRR 93 (116)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr 93 (116)
.++++.+++++++...+.. .... ........+.|.+.++.|.+..+.........+...++.+..+++.||+|+|
T Consensus 194 ~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~ 268 (401)
T PRK11043 194 LTFKQLLKSKTYLGNVLIF----AACS-AAFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGE 268 (401)
T ss_pred HHHHHHHcChhHHHHHHHH----HHHH-HHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence 3566777766544322211 1111 1122333456777778888887777766667778888999999999999999
Q ss_pred hHHhhhh
Q psy17792 94 TLHLYGL 100 (116)
Q Consensus 94 ~~~~~~~ 100 (116)
+....+.
T Consensus 269 ~~~~~~~ 275 (401)
T PRK11043 269 QLLPWLL 275 (401)
T ss_pred HHHHHHH
Confidence 8664443
No 102
>PRK11010 ampG muropeptide transporter; Validated
Probab=98.64 E-value=5e-07 Score=61.69 Aligned_cols=56 Identities=11% Similarity=-0.088 Sum_probs=42.8
Q ss_pred hHHhHHHHHhhcCCCcchhHHHH-HHHHHHHHHHHHHHHHhhhcccchhHHhhhhHH
Q psy17792 47 VFYYSTALFESSGLSEKTAKFTT-IGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGG 102 (116)
Q Consensus 47 ~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~ 102 (116)
..+..|++.++.|.+..+..... ....++..++.+++|+++||+|||+.+..+.+.
T Consensus 242 ~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l 298 (491)
T PRK11010 242 MSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGIL 298 (491)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34455666677899998887776 455678999999999999999998877654443
No 103
>PRK09952 shikimate transporter; Provisional
Probab=98.63 E-value=6.3e-07 Score=60.26 Aligned_cols=85 Identities=12% Similarity=0.011 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhhchhhhHHhHHHHHh-hc--CCCcchhHHHH----HHHHHHHHHHHHHHHHhhhcccchhHHhhhhH
Q psy17792 29 LIIGIVMQLSQQFSGINAVFYYSTALFE-SS--GLSEKTAKFTT----IGIGAVMVTMTIISIPLMDRMGRRTLHLYGLG 101 (116)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--g~~~~~~~~~~----~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~ 101 (116)
.+.......+..........+..|.+.. +. +.++....... ....++..+++++.|+++||+|||+++..+..
T Consensus 23 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~ 102 (438)
T PRK09952 23 AALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAMGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVW 102 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHHHH
Confidence 4444544555555555556666665443 33 45554322211 23445677888999999999999999999888
Q ss_pred HHHHHHHHHHHH
Q psy17792 102 GMFIFSIFITIS 113 (116)
Q Consensus 102 ~~~~~~~~~~~~ 113 (116)
+.+++....+++
T Consensus 103 ~~~~~~~~~~~~ 114 (438)
T PRK09952 103 MMGIATALIGLL 114 (438)
T ss_pred HHHHHHHHHhcC
Confidence 887776665543
No 104
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=98.63 E-value=2.1e-07 Score=61.41 Aligned_cols=59 Identities=20% Similarity=0.137 Sum_probs=49.8
Q ss_pred hhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHH
Q psy17792 45 NAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGM 103 (116)
Q Consensus 45 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~ 103 (116)
....+..|.+.+++|.+..+.++......++..++.++.|+++||+|||+++..+....
T Consensus 8 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~ 66 (368)
T TIGR00903 8 VTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATF 66 (368)
T ss_pred HHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 44566788899999999999999999999999999999999999999998776554433
No 105
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=98.63 E-value=7.7e-08 Score=62.70 Aligned_cols=70 Identities=14% Similarity=-0.032 Sum_probs=57.9
Q ss_pred HHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHH
Q psy17792 38 SQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFS 107 (116)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~ 107 (116)
++...++.......|.+.+++|.+..+..+......++..++.++.|+++||+|||+.+..+.....+..
T Consensus 10 ~~~~~~~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 79 (355)
T TIGR00896 10 LNLRPALTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGI 79 (355)
T ss_pred hcccCccccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 4444455555667889999999999999999999999999999999999999999999888776554433
No 106
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=98.62 E-value=7.6e-07 Score=58.14 Aligned_cols=56 Identities=18% Similarity=0.242 Sum_probs=41.1
Q ss_pred hHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHH
Q psy17792 50 YSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFI 105 (116)
Q Consensus 50 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~ 105 (116)
+.+++.++.|.++.+.............++.++.+++.||+|||+.+..+.....+
T Consensus 222 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~ 277 (375)
T TIGR00899 222 MPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVA 277 (375)
T ss_pred hHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHH
Confidence 33344467888887777666666667778888999999999999988766554433
No 107
>TIGR00893 2A0114 d-galactonate transporter.
Probab=98.62 E-value=5.9e-07 Score=58.54 Aligned_cols=50 Identities=24% Similarity=0.176 Sum_probs=40.0
Q ss_pred hhhHHhHHHHH-hhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchh
Q psy17792 45 NAVFYYSTALF-ESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRT 94 (116)
Q Consensus 45 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~ 94 (116)
.....+.|.+. +..|.+..+.........+...++.++.++++||+|||+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 282 (399)
T TIGR00893 232 GFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRG 282 (399)
T ss_pred HHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34444555554 567888888888888888999999999999999999996
No 108
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=98.62 E-value=5.9e-07 Score=59.63 Aligned_cols=56 Identities=18% Similarity=0.101 Sum_probs=40.9
Q ss_pred HhHHHHHhhcCCCcchhHHHHHHHH-HHHHHHHHHHHHhhhcccchhHHhhhhHHHH
Q psy17792 49 YYSTALFESSGLSEKTAKFTTIGIG-AVMVTMTIISIPLMDRMGRRTLHLYGLGGMF 104 (116)
Q Consensus 49 ~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~ 104 (116)
+..|++.++.|.+..+......... +...++.++.+++.||+|||+.+..+.....
T Consensus 231 ~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~ 287 (402)
T PRK11902 231 LSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQA 287 (402)
T ss_pred HHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3445666778988877776655444 4578899999999999999988765554433
No 109
>PRK11663 regulatory protein UhpC; Provisional
Probab=98.61 E-value=6.2e-07 Score=60.17 Aligned_cols=46 Identities=13% Similarity=0.010 Sum_probs=37.6
Q ss_pred hhhHHhHHHHH-hhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy17792 45 NAVFYYSTALF-ESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRM 90 (116)
Q Consensus 45 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~ 90 (116)
.....+.|.++ ++.|.+..+.........+++.++.++.|+++||+
T Consensus 260 ~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~ 306 (434)
T PRK11663 260 AAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKL 306 (434)
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHh
Confidence 34445666666 56799988888888888899999999999999999
No 110
>PRK10091 MFS transport protein AraJ; Provisional
Probab=98.61 E-value=5.8e-07 Score=59.28 Aligned_cols=60 Identities=20% Similarity=0.134 Sum_probs=47.8
Q ss_pred HHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHH
Q psy17792 48 FYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFS 107 (116)
Q Consensus 48 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~ 107 (116)
.+..|++.+..|.++.+.........++..++.++.+++.||+|+|+....+..+..+..
T Consensus 220 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~ 279 (382)
T PRK10091 220 SYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLAL 279 (382)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHH
Confidence 344566666689988888888888999999999999999999999998877665544443
No 111
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.59 E-value=6.3e-07 Score=61.00 Aligned_cols=82 Identities=17% Similarity=0.084 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhh----cccchhHHhhh-hHH
Q psy17792 28 PLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMD----RMGRRTLHLYG-LGG 102 (116)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d----r~grr~~~~~~-~~~ 102 (116)
+++.........|++. .....+.+.+++++|.+............+.+.+..++.|+++| |+|||++++.+ ...
T Consensus 5 ~li~~~~~~~Giq~~~-~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~ 83 (477)
T TIGR01301 5 KLLRVASVAAGVQFGW-ALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAAL 83 (477)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHH
Confidence 3555455555556554 44444555577889999988889999999999999999999999 59999988764 444
Q ss_pred HHHHHHHH
Q psy17792 103 MFIFSIFI 110 (116)
Q Consensus 103 ~~~~~~~~ 110 (116)
..++...+
T Consensus 84 ~~~~l~ll 91 (477)
T TIGR01301 84 VAFAVILI 91 (477)
T ss_pred HHHHHHHH
Confidence 44444443
No 112
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=98.59 E-value=8e-07 Score=59.34 Aligned_cols=63 Identities=13% Similarity=0.035 Sum_probs=47.5
Q ss_pred HHHHHHHHhhchhhhHHhHHHHHhhc--CCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhH
Q psy17792 33 IVMQLSQQFSGINAVFYYSTALFESS--GLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTL 95 (116)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~ 95 (116)
....++.....+.....|.|.++++. |.+..+.........+...++.++.++++||++||+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~ 311 (412)
T TIGR02332 247 YTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKH 311 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHH
Confidence 33344444455566677888888875 5566677778888899999999999999999997774
No 113
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=98.59 E-value=7.6e-07 Score=60.20 Aligned_cols=88 Identities=24% Similarity=0.202 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcC----CCcchhHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHhhhh
Q psy17792 26 RKPLIIGIVMQLSQQFSGINAVFYYSTALFESSG----LSEKTAKFTTIGIGAVMVTMTIISIPLMDRM-GRRTLHLYGL 100 (116)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-grr~~~~~~~ 100 (116)
+|++...+..-+...+++|+.-....-|+..+.+ ++.+++......+...--...+++||++||+ |+|+.++.|.
T Consensus 20 Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGa 99 (498)
T COG3104 20 PRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGA 99 (498)
T ss_pred CchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 4456677788888899998887777777777766 8888887777777777778888999999995 9999999999
Q ss_pred HHHHHHHHHHHHH
Q psy17792 101 GGMFIFSIFITIS 113 (116)
Q Consensus 101 ~~~~~~~~~~~~~ 113 (116)
++..+..++++..
T Consensus 100 il~~iGh~~L~~~ 112 (498)
T COG3104 100 ILMAIGHLVLAIS 112 (498)
T ss_pred HHHHHHHHHHhcc
Confidence 9888887776653
No 114
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=98.59 E-value=7.9e-07 Score=60.46 Aligned_cols=44 Identities=23% Similarity=0.196 Sum_probs=36.9
Q ss_pred hHHH-HHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccch
Q psy17792 50 YSTA-LFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRR 93 (116)
Q Consensus 50 ~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr 93 (116)
+.|. +.++.|.+..++........++..++.+++|+++||++||
T Consensus 274 ~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r 318 (476)
T PLN00028 274 IIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARR 318 (476)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence 4444 4456799988888888889999999999999999999876
No 115
>PTZ00207 hypothetical protein; Provisional
Probab=98.58 E-value=1.1e-06 Score=61.17 Aligned_cols=68 Identities=15% Similarity=0.106 Sum_probs=52.1
Q ss_pred hhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHHH
Q psy17792 45 NAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITIS 113 (116)
Q Consensus 45 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~~ 113 (116)
+....+.|.+.+++|.+..+........... ....+++|++.||+|||+++..+.+...+..+..+++
T Consensus 44 y~fsv~s~~L~~~lgls~~~l~~i~svg~~~-g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala 111 (591)
T PTZ00207 44 YAFNLISGAMQARYNLTQRDLSTITTVGIAV-GYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALT 111 (591)
T ss_pred HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3556778888899999988877666553333 3456678999999999999999988888877766654
No 116
>TIGR00898 2A0119 cation transport protein.
Probab=98.58 E-value=1.2e-06 Score=59.65 Aligned_cols=89 Identities=18% Similarity=0.162 Sum_probs=53.2
Q ss_pred chhhhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccch
Q psy17792 14 ISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRR 93 (116)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr 93 (116)
.+++++++++..++..+.....++. ....++ ..+...++.+.+ .........+..+++.++.++++||+|||
T Consensus 314 ~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~l~dr~grr 385 (505)
T TIGR00898 314 YSFLDLFRTPNLRKTTLCLMMLWFT-TAFSYY----GLVLDLGNLGGN---IYLDLFISGLVELPAKLITLLLIDRLGRR 385 (505)
T ss_pred CcHHHHhCChHHHHHHHHHHHHHHH-HHHHHH----HHhccccccCCC---hHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 3567888877666544433332222 111111 122223333433 23444556777888999999999999999
Q ss_pred hHHhhhhHHHHHHHHHH
Q psy17792 94 TLHLYGLGGMFIFSIFI 110 (116)
Q Consensus 94 ~~~~~~~~~~~~~~~~~ 110 (116)
+.+..+.++.+++.+.+
T Consensus 386 ~~~~~~~~~~~~~~l~~ 402 (505)
T TIGR00898 386 YTMAASLLLAGVALLLL 402 (505)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99888777666655444
No 117
>PRK15011 sugar efflux transporter B; Provisional
Probab=98.57 E-value=1e-06 Score=58.38 Aligned_cols=56 Identities=16% Similarity=0.119 Sum_probs=41.4
Q ss_pred hHHhHHHHH-hhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHH
Q psy17792 47 VFYYSTALF-ESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGG 102 (116)
Q Consensus 47 ~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~ 102 (116)
...+.|.++ ++.|.+..+.........+..+++.++.|+++||+|||+.+..+...
T Consensus 235 ~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~ 291 (393)
T PRK15011 235 YIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVA 291 (393)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 334455544 56788887777666666677788899999999999999977665443
No 118
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=98.57 E-value=7e-07 Score=59.00 Aligned_cols=84 Identities=13% Similarity=0.041 Sum_probs=51.8
Q ss_pred hhhhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHH-HHHHHHHHHHHHhhhcccch
Q psy17792 15 SMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIG-AVMVTMTIISIPLMDRMGRR 93 (116)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~l~dr~grr 93 (116)
++++.+|++..+.... .. ++.+........+ .+.+.++.|.+.++......... ....++.++.|++.||+|+|
T Consensus 200 ~~~~~l~~~~~~~~~~-~~---~l~~~~~~~~~~~-~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~ 274 (390)
T TIGR02718 200 SLFRFFRRPLAWSLLA-LA---LLSAMTAVSGFGL-SKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLW 274 (390)
T ss_pred HHHHHHcCcCHHHHHH-HH---HHHHHHHHHHHHH-hhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4567777665433222 12 2222222222333 34455668999888777766655 45677788999999999999
Q ss_pred hHHhhhhHHH
Q psy17792 94 TLHLYGLGGM 103 (116)
Q Consensus 94 ~~~~~~~~~~ 103 (116)
+.+..+....
T Consensus 275 ~~l~~~~~~~ 284 (390)
T TIGR02718 275 RTFILGVGLA 284 (390)
T ss_pred HHHHHHHHHH
Confidence 9887665443
No 119
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=98.56 E-value=4e-07 Score=59.63 Aligned_cols=66 Identities=14% Similarity=0.115 Sum_probs=55.6
Q ss_pred hHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHH
Q psy17792 47 VFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITI 112 (116)
Q Consensus 47 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~ 112 (116)
.....|.+.+++|.+..+..+......++..++.++.|+++||+|||+++..+..+..+.......
T Consensus 10 ~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~ 75 (377)
T PRK11102 10 YLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACAL 75 (377)
T ss_pred HhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHH
Confidence 345667888899999999999999999999999999999999999999998888777666555443
No 120
>KOG0253|consensus
Probab=98.56 E-value=1.1e-06 Score=58.12 Aligned_cols=96 Identities=23% Similarity=0.252 Sum_probs=61.4
Q ss_pred hhhhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcC--------------------CCcchhHHHHHHHHH
Q psy17792 15 SMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSG--------------------LSEKTAKFTTIGIGA 74 (116)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--------------------~~~~~~~~~~~~~~~ 74 (116)
...+++ .|.+||..++...+++...+++|+. ........+.-+ .+...-..-..+..+
T Consensus 315 ~~~nLl-sp~lrkttlllw~iwfgnafsyyg~-VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitsl 392 (528)
T KOG0253|consen 315 GTTNLL-SPKLRKTTLLLWRIWFGNAFSYYGS-VLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSL 392 (528)
T ss_pred chHhhc-ChHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHH
Confidence 345555 4566777776666655555555443 323333332211 111122334566778
Q ss_pred HHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHH
Q psy17792 75 VMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITI 112 (116)
Q Consensus 75 ~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~ 112 (116)
..++|.++.+++.||+|||+.+....+.+.++.+....
T Consensus 393 aefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~ 430 (528)
T KOG0253|consen 393 AEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTT 430 (528)
T ss_pred hhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999998888887766543
No 121
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=98.55 E-value=9.7e-07 Score=58.43 Aligned_cols=51 Identities=12% Similarity=0.025 Sum_probs=36.7
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHH
Q psy17792 59 GLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIF 109 (116)
Q Consensus 59 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~ 109 (116)
+.+....+.......+...++.+..+++.||+|||+.+..+..+.++....
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~ 300 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIG 300 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence 334444455666667778888899999999999999888777665554433
No 122
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=98.54 E-value=1.4e-06 Score=58.81 Aligned_cols=50 Identities=10% Similarity=0.160 Sum_probs=38.1
Q ss_pred hhhHHhHHHHHhh-cCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcc--cchh
Q psy17792 45 NAVFYYSTALFES-SGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRM--GRRT 94 (116)
Q Consensus 45 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~--grr~ 94 (116)
+....|.|.++++ .|.+..+.........++..++.++.|+++||+ +||+
T Consensus 270 ~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~ 322 (452)
T PRK11273 270 YGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG 322 (452)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc
Confidence 3344566666654 688877777777788888899999999999999 5554
No 123
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=98.54 E-value=3e-06 Score=57.93 Aligned_cols=63 Identities=16% Similarity=0.045 Sum_probs=49.9
Q ss_pred hhHHhHHHHHh-hcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHH
Q psy17792 46 AVFYYSTALFE-SSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSI 108 (116)
Q Consensus 46 ~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~ 108 (116)
...++.|..++ ..|.++.+.+.......+...++.++.|++.||+|||+.+..+.....+...
T Consensus 277 ~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~ 340 (495)
T PRK14995 277 GFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFY 340 (495)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHH
Confidence 34455565555 4799999999999989999999999999999999999988777666554443
No 124
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=98.54 E-value=3e-07 Score=61.37 Aligned_cols=47 Identities=13% Similarity=0.064 Sum_probs=35.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHH
Q psy17792 62 EKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSI 108 (116)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~ 108 (116)
............+..+++.++.++++||+|||+.+..+..+..+..+
T Consensus 256 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~ 302 (437)
T TIGR00792 256 PELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYL 302 (437)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 33444555666888899999999999999999988877665554433
No 125
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=98.54 E-value=1.4e-06 Score=56.31 Aligned_cols=62 Identities=13% Similarity=0.059 Sum_probs=47.9
Q ss_pred hhHHhHHHHHhh---cCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHH
Q psy17792 46 AVFYYSTALFES---SGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFS 107 (116)
Q Consensus 46 ~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~ 107 (116)
....|.+.++++ .|.++.+.............+|.++.+++.||+|+|+++..+..+..+..
T Consensus 158 ~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~ 222 (310)
T TIGR01272 158 SAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLS 222 (310)
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 334445555543 58888888888999999999999999999999999998877665555443
No 126
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=98.52 E-value=1.3e-06 Score=57.13 Aligned_cols=62 Identities=13% Similarity=-0.040 Sum_probs=45.9
Q ss_pred hhhHHhHH-HHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhh-hhHHHHHH
Q psy17792 45 NAVFYYST-ALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLY-GLGGMFIF 106 (116)
Q Consensus 45 ~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~-~~~~~~~~ 106 (116)
.......| ++.+++|.+..+.++......+...+..++.|+++||+|||+.++. +.....+.
T Consensus 14 ~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~ 77 (375)
T TIGR00899 14 ALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALA 77 (375)
T ss_pred HHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 33334444 4556789999898888888888899999999999999999886554 44433333
No 127
>PRK03893 putative sialic acid transporter; Provisional
Probab=98.51 E-value=2.4e-06 Score=57.99 Aligned_cols=59 Identities=14% Similarity=-0.017 Sum_probs=48.0
Q ss_pred hHHhHHHHH-hhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHH
Q psy17792 47 VFYYSTALF-ESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFI 105 (116)
Q Consensus 47 ~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~ 105 (116)
...+.|.++ ++.|.+..+.........++..++.++.|+++||+|||+++..+..+..+
T Consensus 294 ~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~ 353 (496)
T PRK03893 294 IQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQL 353 (496)
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 445566666 47899998888888889999999999999999999999988766554443
No 128
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=98.51 E-value=1.8e-06 Score=57.29 Aligned_cols=59 Identities=17% Similarity=0.134 Sum_probs=43.4
Q ss_pred hHHHHH-hhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHH
Q psy17792 50 YSTALF-ESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSI 108 (116)
Q Consensus 50 ~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~ 108 (116)
+.|.++ ++.|.++.+.........++..++.++.++++||++||+.+..+.+...+...
T Consensus 237 ~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~ 296 (406)
T PRK15402 237 LSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLL 296 (406)
T ss_pred HhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 345544 56788887776666666777888999999999999999988776655444333
No 129
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=98.50 E-value=1.1e-06 Score=61.18 Aligned_cols=64 Identities=16% Similarity=0.018 Sum_probs=51.5
Q ss_pred HhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHHH
Q psy17792 49 YYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITIS 113 (116)
Q Consensus 49 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~~ 113 (116)
.-.+++..+.|-++ +..|......+...+..++.|.++|.+|||..++.+.++..+..++.+.+
T Consensus 65 ~~l~~I~~diG~~~-~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA 128 (599)
T PF06609_consen 65 SILPYINADIGGSD-NWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA 128 (599)
T ss_pred HHHHHHHHhcCCCc-cchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC
Confidence 34567777887754 55577777888899999999999999999999999988888877766544
No 130
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=98.49 E-value=2.9e-07 Score=64.60 Aligned_cols=88 Identities=13% Similarity=-0.025 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHH
Q psy17792 26 RKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFI 105 (116)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~ 105 (116)
++..++...+..+.+.........-.|.+.++++++..+.+++.....++..++.++.+++.||.|||+++..+.++.++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~l 110 (633)
T TIGR00805 31 IKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGL 110 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHH
Confidence 33333434434454544444556667888889999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHH
Q psy17792 106 FSIFITIS 113 (116)
Q Consensus 106 ~~~~~~~~ 113 (116)
..+++++.
T Consensus 111 g~ll~alp 118 (633)
T TIGR00805 111 GSFLLSLP 118 (633)
T ss_pred HHHHHhCh
Confidence 88877654
No 131
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=98.48 E-value=8.6e-07 Score=58.96 Aligned_cols=68 Identities=22% Similarity=0.169 Sum_probs=61.7
Q ss_pred hHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHHHH
Q psy17792 47 VFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITISL 114 (116)
Q Consensus 47 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~~~ 114 (116)
...-.|.+.++.+++..+.+.......+...++-++.|.++||.+.|..+..|+++.+++.+.++++.
T Consensus 48 F~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~ 115 (448)
T COG2271 48 FNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSP 115 (448)
T ss_pred HhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhh
Confidence 45677889999999999999999999999999999999999999999999999999999888887653
No 132
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=98.48 E-value=1.7e-06 Score=58.09 Aligned_cols=50 Identities=8% Similarity=0.072 Sum_probs=39.3
Q ss_pred hhhHHhHHHHHhh-cCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchh
Q psy17792 45 NAVFYYSTALFES-SGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRT 94 (116)
Q Consensus 45 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~ 94 (116)
+....|.|.++++ .|.+..+..+......+...++.++.++++||+++++
T Consensus 268 ~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~ 318 (438)
T TIGR00712 268 YGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGN 318 (438)
T ss_pred HHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 3445566766664 6888888888888888899999999999999996543
No 133
>KOG2615|consensus
Probab=98.47 E-value=8.2e-07 Score=58.54 Aligned_cols=52 Identities=21% Similarity=0.165 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHHHHc
Q psy17792 64 TAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITISLL 115 (116)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~ 115 (116)
-.+..+..+.+.+++.++..|.++||+|||+++..++++.++....++.+-+
T Consensus 69 yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~ 120 (451)
T KOG2615|consen 69 YAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRN 120 (451)
T ss_pred hhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888899999999999999999999999999999999998888877654
No 134
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=98.47 E-value=4.3e-06 Score=56.06 Aligned_cols=61 Identities=8% Similarity=0.007 Sum_probs=48.4
Q ss_pred hHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccc-hhHHhhhhHHHHHHH
Q psy17792 47 VFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGR-RTLHLYGLGGMFIFS 107 (116)
Q Consensus 47 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~gr-r~~~~~~~~~~~~~~ 107 (116)
..+..+++.++.|.+..+.++......++..++.++.|.++||+|| |+++..+.+...+..
T Consensus 22 ~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~ 83 (418)
T TIGR00889 22 LVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLL 83 (418)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3555666667789999999999999999999999999999999965 666666555544433
No 135
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=98.47 E-value=3.5e-06 Score=57.60 Aligned_cols=51 Identities=14% Similarity=0.042 Sum_probs=40.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHH
Q psy17792 62 EKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITI 112 (116)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~ 112 (116)
..+..+......++..++.++.++++||+|||+.+..+.++..+.....+.
T Consensus 55 ~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~ 105 (502)
T TIGR00887 55 SSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGL 105 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 344567788888999999999999999999999998877766665554443
No 136
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=98.46 E-value=2.3e-06 Score=57.35 Aligned_cols=61 Identities=13% Similarity=0.109 Sum_probs=42.9
Q ss_pred hHHHHHhhcCCCc--------chhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHH
Q psy17792 50 YSTALFESSGLSE--------KTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFI 110 (116)
Q Consensus 50 ~~~~~~~~~g~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~ 110 (116)
+.|...++.|.+. ...........+...++.++.++++||+|||+++..+.+...+.....
T Consensus 230 ~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~ 298 (418)
T TIGR00889 230 FGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFF 298 (418)
T ss_pred hHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 3344455555443 344566666777888889999999999999999988877766654333
No 137
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.43 E-value=1e-06 Score=59.77 Aligned_cols=55 Identities=15% Similarity=0.004 Sum_probs=37.2
Q ss_pred hHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHH
Q psy17792 50 YSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMF 104 (116)
Q Consensus 50 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~ 104 (116)
+.+++.+....+............+..+++.++.++++||+|||+.+..+..+..
T Consensus 253 ~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~ 307 (473)
T PRK10429 253 FAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPV 307 (473)
T ss_pred heeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 4445554433333344455555667888899999999999999999876665444
No 138
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=98.42 E-value=5.7e-06 Score=53.20 Aligned_cols=71 Identities=24% Similarity=0.245 Sum_probs=54.7
Q ss_pred hhchhhhHHhHHHHHhhc-CCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchh-HHhhhhHHHHHHHHHHH
Q psy17792 41 FSGINAVFYYSTALFESS-GLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRT-LHLYGLGGMFIFSIFIT 111 (116)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~-~~~~~~~~~~~~~~~~~ 111 (116)
.........+.|.+.++. |.+..+.........++..++.++.+++.||+|||+ .+..+.....+......
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 260 (352)
T cd06174 188 SFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLA 260 (352)
T ss_pred HhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 333445555666666654 888888888899999999999999999999999999 88777776666555443
No 139
>TIGR00898 2A0119 cation transport protein.
Probab=98.41 E-value=3.1e-07 Score=62.53 Aligned_cols=63 Identities=14% Similarity=0.126 Sum_probs=52.8
Q ss_pred hHHHHHhhcCCC---cchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHH
Q psy17792 50 YSTALFESSGLS---EKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITI 112 (116)
Q Consensus 50 ~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~ 112 (116)
+.|.+.++.+.+ ..+..+......++..++.++.|+++||+|||+++..+.++..++.+..++
T Consensus 111 ~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~ 176 (505)
T TIGR00898 111 FSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAF 176 (505)
T ss_pred ccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHH
Confidence 456777788888 677788899999999999999999999999999999888777766655544
No 140
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.40 E-value=2.1e-06 Score=55.44 Aligned_cols=62 Identities=21% Similarity=0.219 Sum_probs=46.2
Q ss_pred hhhHHhHHHH-HhhcCCC-cchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHH
Q psy17792 45 NAVFYYSTAL-FESSGLS-EKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIF 106 (116)
Q Consensus 45 ~~~~~~~~~~-~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~ 106 (116)
.....+.|.+ .+..|.+ ..+.........+...++.++.++++||+|+|+..........+.
T Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 286 (352)
T PF07690_consen 223 SGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILG 286 (352)
T ss_dssp HHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 3355566765 6678888 567777788888889999999999999999887766555444433
No 141
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=98.36 E-value=1.7e-05 Score=54.12 Aligned_cols=86 Identities=9% Similarity=0.077 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcch-hHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHH
Q psy17792 26 RKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKT-AKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMF 104 (116)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~ 104 (116)
++..++.+...++.++=. ...+..|++.++.|++..+ .+...........+..+++|+++||+|-|+++..+.+...
T Consensus 26 ~~~~~~lC~fGF~~e~R~--n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Ws 103 (511)
T TIGR00806 26 RVLVLYLCFYGFMAQFRP--GESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFV 103 (511)
T ss_pred hHHHHHHHHHHHHHHhhc--hHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 444444455555555543 3455678888999999998 8888888999999999999999999999999998888777
Q ss_pred HHHHHHHHH
Q psy17792 105 IFSIFITIS 113 (116)
Q Consensus 105 ~~~~~~~~~ 113 (116)
+...+.++.
T Consensus 104 l~t~L~~fa 112 (511)
T TIGR00806 104 CVWLLLLLG 112 (511)
T ss_pred HHHHHHHHH
Confidence 776666554
No 142
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=98.36 E-value=4e-06 Score=54.54 Aligned_cols=45 Identities=16% Similarity=0.153 Sum_probs=35.5
Q ss_pred hHHhHHHHH-hhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy17792 47 VFYYSTALF-ESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMG 91 (116)
Q Consensus 47 ~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~g 91 (116)
...+.|.+. +..|.+..+.........+...++.++.+++.||.+
T Consensus 235 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~ 280 (379)
T TIGR00881 235 ILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLF 280 (379)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHc
Confidence 334445444 567888888888888889999999999999999864
No 143
>KOG2533|consensus
Probab=98.36 E-value=3.8e-06 Score=57.51 Aligned_cols=85 Identities=19% Similarity=0.082 Sum_probs=61.0
Q ss_pred hhhhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHHhh-cCCCcchhHHHHHHHHHHHHHHHHHHHHhhhc----
Q psy17792 15 SMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFES-SGLSEKTAKFTTIGIGAVMVTMTIISIPLMDR---- 89 (116)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr---- 89 (116)
.+++.++.+..|. ..+..++.....+...+|.|.++++ .|.+..++..++....++++++.+++|+++||
T Consensus 265 ~~~~a~~dp~vw~-----~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~ 339 (495)
T KOG2533|consen 265 GFKEALKDPGVWP-----FSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTI 339 (495)
T ss_pred HHHHHHhchhHHH-----HHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhh
Confidence 3456666653332 3333444444556788899999988 56889999999999999999999999999999
Q ss_pred ccchhHHhhhhHHHH
Q psy17792 90 MGRRTLHLYGLGGMF 104 (116)
Q Consensus 90 ~grr~~~~~~~~~~~ 104 (116)
..+|..+.....+..
T Consensus 340 ~~~~~~~~~~~~~~~ 354 (495)
T KOG2533|consen 340 FARRLLFIVFLCLYA 354 (495)
T ss_pred HHHHHHHHHHHHHHH
Confidence 566665555444333
No 144
>KOG2532|consensus
Probab=98.35 E-value=3.5e-06 Score=57.34 Aligned_cols=75 Identities=15% Similarity=0.164 Sum_probs=56.7
Q ss_pred cchhhhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHHh-hcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy17792 13 KISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFE-SSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMG 91 (116)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~g 91 (116)
+.+++++++++..| ++++..+....+......|.|.+++ -+|++..+.++.+++..+.+.+..+++|.++||.-
T Consensus 248 ~vP~~~i~ts~~vw-----ai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~ 322 (466)
T KOG2532|consen 248 PVPYKAILTSPPVW-----AIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLT 322 (466)
T ss_pred CCCHHHHHcCHHHH-----HHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45788888776433 3333444444455566666676666 58999999999999999999999999999999986
Q ss_pred c
Q psy17792 92 R 92 (116)
Q Consensus 92 r 92 (116)
+
T Consensus 323 ~ 323 (466)
T KOG2532|consen 323 F 323 (466)
T ss_pred h
Confidence 6
No 145
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=98.34 E-value=9.4e-06 Score=53.72 Aligned_cols=40 Identities=15% Similarity=0.023 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHH
Q psy17792 68 TTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFS 107 (116)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~ 107 (116)
......+...++.+..++++||+|||+.+..+.....+..
T Consensus 263 ~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~ 302 (408)
T PRK09874 263 IASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLL 302 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHH
Confidence 3344566777888889999999999998887766554443
No 146
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=98.33 E-value=1.1e-05 Score=54.59 Aligned_cols=74 Identities=12% Similarity=-0.006 Sum_probs=50.5
Q ss_pred hhhhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHHh-hcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccch
Q psy17792 15 SMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFE-SSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRR 93 (116)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr 93 (116)
+++++++++.. +......+....+.+....|.|.+++ ..|.+..+.........++..++.++.|+++||+++|
T Consensus 253 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~ 327 (465)
T TIGR00894 253 PIKAIPKSLPV-----WAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSS 327 (465)
T ss_pred CHHHHhcCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35555544322 22333334444444555566676664 5789888888888888999999999999999998755
No 147
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=98.33 E-value=1e-05 Score=55.85 Aligned_cols=89 Identities=13% Similarity=0.146 Sum_probs=57.8
Q ss_pred hhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHh
Q psy17792 18 ELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHL 97 (116)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~ 97 (116)
+-+|++.+++ ++.+-.+..+..+...... +.+..+.+-++...........+..++.++++|.++||++||++++
T Consensus 5 aplr~~~Fr~-lw~a~~iS~lG~~~~~va~----~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili 79 (524)
T PF05977_consen 5 APLRNRNFRR-LWIAQLISNLGDWMQTVAL----AWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILI 79 (524)
T ss_pred ccccCchHHH-HHHHHHHHHHHHHHHHHHH----HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHH
Confidence 3467766664 3333344444333333333 3334455566667777777888888999999999999999999999
Q ss_pred hhhHHHHHHHHHHH
Q psy17792 98 YGLGGMFIFSIFIT 111 (116)
Q Consensus 98 ~~~~~~~~~~~~~~ 111 (116)
.+-+...+....++
T Consensus 80 ~~~~~~~~~~~~L~ 93 (524)
T PF05977_consen 80 LSQLLRALVALLLA 93 (524)
T ss_pred HHHHHHHHHHHHHH
Confidence 87766655444443
No 148
>PRK15011 sugar efflux transporter B; Provisional
Probab=98.33 E-value=1.2e-05 Score=53.26 Aligned_cols=54 Identities=13% Similarity=0.039 Sum_probs=35.0
Q ss_pred HHhHHHHHhhcCCCcchhHHHHHHHHHHHHH-HHHHHHHhhhcccchhHHh-hhhHH
Q psy17792 48 FYYSTALFESSGLSEKTAKFTTIGIGAVMVT-MTIISIPLMDRMGRRTLHL-YGLGG 102 (116)
Q Consensus 48 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~l~dr~grr~~~~-~~~~~ 102 (116)
....+++.+++|.+..+.+.......+...+ +.+.+++ .||+|||+.++ .+.+.
T Consensus 36 p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~ 91 (393)
T PRK15011 36 PTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLL 91 (393)
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHH
Confidence 3344455678899998887776555554444 4444555 99999998754 44443
No 149
>PRK10489 enterobactin exporter EntS; Provisional
Probab=98.32 E-value=6.3e-06 Score=54.96 Aligned_cols=60 Identities=13% Similarity=-0.026 Sum_probs=44.9
Q ss_pred HHhHHHHHhh-cCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHH
Q psy17792 48 FYYSTALFES-SGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFS 107 (116)
Q Consensus 48 ~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~ 107 (116)
..+.|.+.++ .|.+.....+......++..++.++.+++.||.++++.+..+..+..+..
T Consensus 243 ~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 303 (417)
T PRK10489 243 RVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAV 303 (417)
T ss_pred HHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHH
Confidence 3345656665 88888888888888888999999999999999887777666555444433
No 150
>KOG0252|consensus
Probab=98.29 E-value=5.1e-06 Score=56.11 Aligned_cols=53 Identities=15% Similarity=0.019 Sum_probs=44.7
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHH
Q psy17792 60 LSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITI 112 (116)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~ 112 (116)
+++........+..++.+.|.+++||+.||+|||+++....+++.++.++.+.
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~ 133 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGL 133 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhcc
Confidence 55556677888889999999999999999999999999888888887765544
No 151
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=98.29 E-value=1.7e-05 Score=52.77 Aligned_cols=50 Identities=14% Similarity=0.191 Sum_probs=39.0
Q ss_pred hHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHH
Q psy17792 47 VFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLH 96 (116)
Q Consensus 47 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~ 96 (116)
..+..|.+.++.|.+..+.........++..++.++.+++.||.+|+...
T Consensus 236 ~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~ 285 (394)
T PRK10213 236 FTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALA 285 (394)
T ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHH
Confidence 34456777788899888877777888889999999999999996544333
No 152
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=98.28 E-value=2.1e-05 Score=41.31 Aligned_cols=66 Identities=14% Similarity=0.027 Sum_probs=58.5
Q ss_pred HHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHHH
Q psy17792 48 FYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITIS 113 (116)
Q Consensus 48 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~~ 113 (116)
....|.+.++.+++..+..+......++.++|++...++.++.++++.+..+.+...+....+++.
T Consensus 12 TplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 12 TPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred HhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 346799999999999999999999999999999999999999888888888888888887777654
No 153
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=98.28 E-value=2.1e-05 Score=52.38 Aligned_cols=81 Identities=15% Similarity=0.050 Sum_probs=63.8
Q ss_pred HHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHH
Q psy17792 33 IVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITI 112 (116)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~ 112 (116)
....+...++.........+.+-+++|+++.|..++.+...+.+.+.-++-|.+.||+|-|++...+.++..+-++..++
T Consensus 19 S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~ 98 (417)
T COG2223 19 STLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAF 98 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555666677889999999999999999999999999999999999999999988887776666555
Q ss_pred H
Q psy17792 113 S 113 (116)
Q Consensus 113 ~ 113 (116)
+
T Consensus 99 a 99 (417)
T COG2223 99 A 99 (417)
T ss_pred H
Confidence 4
No 154
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=98.27 E-value=1.4e-05 Score=59.30 Aligned_cols=56 Identities=9% Similarity=-0.088 Sum_probs=39.6
Q ss_pred hHHHHHhhcCCCcch--hHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHH
Q psy17792 50 YSTALFESSGLSEKT--AKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFI 105 (116)
Q Consensus 50 ~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~ 105 (116)
..+.+....+.+... ..+...+..+...++.+++|+++||+|||++++.+.++..+
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~ 89 (1146)
T PRK08633 32 IQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVG 89 (1146)
T ss_pred HHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHH
Confidence 344454555554332 45666677888899999999999999999998877654333
No 155
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=98.26 E-value=2e-05 Score=53.88 Aligned_cols=71 Identities=17% Similarity=0.149 Sum_probs=52.1
Q ss_pred HHHHHHHHhhchhhhHHhHH-HHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccch--hHHhhhhHHH
Q psy17792 33 IVMQLSQQFSGINAVFYYST-ALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRR--TLHLYGLGGM 103 (116)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr--~~~~~~~~~~ 103 (116)
.++.++....+.+.+..... +..+.+|++..+.........+.+++|+++++++.||+|.| +++..+....
T Consensus 286 fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~ 359 (477)
T PF11700_consen 286 FLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILW 359 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence 34444433344444444444 44457999999999999999999999999999999999999 7776665544
No 156
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.26 E-value=1.8e-05 Score=53.03 Aligned_cols=44 Identities=9% Similarity=-0.029 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHH
Q psy17792 66 KFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIF 109 (116)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~ 109 (116)
............+|.++++++.||+++|+++....++..+..+.
T Consensus 272 ~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll 315 (410)
T TIGR00885 272 ANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLG 315 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 33444555778899999999999999999887766655554443
No 157
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=98.23 E-value=1.3e-05 Score=59.56 Aligned_cols=63 Identities=13% Similarity=0.058 Sum_probs=47.6
Q ss_pred hHHhHHHHHhhcCCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHH
Q psy17792 47 VFYYSTALFESSGLSEK-TAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIF 109 (116)
Q Consensus 47 ~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~ 109 (116)
..++.+++.+..|.+.. ...+......++.+++.++.++++||+++++.+..+.++.+++.+.
T Consensus 252 ~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~ 315 (1146)
T PRK08633 252 QANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFL 315 (1146)
T ss_pred HHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHH
Confidence 34444455566888887 7788888888999999999999999999998877666555444433
No 158
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=98.22 E-value=1.2e-05 Score=52.68 Aligned_cols=60 Identities=25% Similarity=0.168 Sum_probs=49.6
Q ss_pred hHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHH
Q psy17792 50 YSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIF 109 (116)
Q Consensus 50 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~ 109 (116)
|.-.++++.|++..+.........+...+...+.|.++||+|||+..+..++...++++.
T Consensus 56 Y~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~ 115 (354)
T PF05631_consen 56 YLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT 115 (354)
T ss_pred hhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 333455778999999888888888888999999999999999999999888877776653
No 159
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.22 E-value=6.4e-06 Score=55.81 Aligned_cols=53 Identities=23% Similarity=0.265 Sum_probs=41.2
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHH
Q psy17792 58 SGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFI 110 (116)
Q Consensus 58 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~ 110 (116)
+|.++..............+++.++.+.+++|+|+|+++.++.++..+..+.+
T Consensus 267 lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~ 319 (467)
T COG2211 267 LGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLL 319 (467)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence 46666566566666777777789999999999999999999887776665544
No 160
>KOG0254|consensus
Probab=98.21 E-value=1.1e-05 Score=55.49 Aligned_cols=49 Identities=20% Similarity=0.216 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHHHH
Q psy17792 66 KFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITISL 114 (116)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~~~ 114 (116)
.+......++..+++++.|+++|++|||+.++.+.+...+..++.+.+.
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~ 140 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAP 140 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 6889999999999999999999999999999999998888888877764
No 161
>PRK09669 putative symporter YagG; Provisional
Probab=98.19 E-value=7e-06 Score=55.30 Aligned_cols=38 Identities=8% Similarity=0.040 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHH
Q psy17792 67 FTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMF 104 (116)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~ 104 (116)
.......+..+++.++.++++||+|||+.+..+.....
T Consensus 268 ~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~ 305 (444)
T PRK09669 268 LFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFV 305 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 33444556677888899999999999998877665443
No 162
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=98.19 E-value=7.4e-06 Score=55.40 Aligned_cols=54 Identities=13% Similarity=-0.142 Sum_probs=44.2
Q ss_pred hcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHH
Q psy17792 57 SSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFI 110 (116)
Q Consensus 57 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~ 110 (116)
+++.+..+.+.......++..++.++.|+++||+|||+++..+.+...+.....
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~ 123 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVI 123 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHH
Confidence 456777777888888899999999999999999999999988777665554443
No 163
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=98.19 E-value=2.3e-05 Score=52.40 Aligned_cols=72 Identities=21% Similarity=0.221 Sum_probs=54.7
Q ss_pred HHHHHhhchhhhHHhHHHHHh-hcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHH
Q psy17792 36 QLSQQFSGINAVFYYSTALFE-SSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFS 107 (116)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~ 107 (116)
..+...-|.+++..+...+-. .+|.+..+........++++.+|+++.|++.||+|-|+++..+..+....+
T Consensus 260 A~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~ 332 (438)
T COG2270 260 ARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAA 332 (438)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHH
Confidence 333333444555444444444 799999999999999999999999999999999999998888776555443
No 164
>PRK09848 glucuronide transporter; Provisional
Probab=98.18 E-value=6.9e-06 Score=55.36 Aligned_cols=61 Identities=10% Similarity=-0.100 Sum_probs=39.5
Q ss_pred HHhHHHHHhh-cCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHH
Q psy17792 48 FYYSTALFES-SGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSI 108 (116)
Q Consensus 48 ~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~ 108 (116)
....|++.++ +|.+............+..+++.++.+++.||+|+|+.+..+..+..+..+
T Consensus 248 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~ 309 (448)
T PRK09848 248 SASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYL 309 (448)
T ss_pred hhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 3345555543 565544333333333556778889999999999999998887766555433
No 165
>PRK11462 putative transporter; Provisional
Probab=98.18 E-value=2.9e-05 Score=52.76 Aligned_cols=52 Identities=17% Similarity=0.180 Sum_probs=34.1
Q ss_pred hhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhh
Q psy17792 45 NAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGL 100 (116)
Q Consensus 45 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~ 100 (116)
....||..+.. |.+ ...........+..+++++++++++||+|+|+....+.
T Consensus 249 ~~~~y~~~y~~---g~~-~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~ 300 (460)
T PRK11462 249 GAMMYYVTWIL---GTP-EVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTN 300 (460)
T ss_pred hHhhhhhhhhc---CCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 33455555543 322 22334455666778889999999999999998876443
No 166
>KOG0255|consensus
Probab=98.15 E-value=4e-06 Score=57.52 Aligned_cols=59 Identities=22% Similarity=0.167 Sum_probs=49.0
Q ss_pred hcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHHHHc
Q psy17792 57 SSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITISLL 115 (116)
Q Consensus 57 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~ 115 (116)
....+.........+..++..+|+++.|.++||+|||++++.+.++..++....+++.+
T Consensus 112 ~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~ 170 (521)
T KOG0255|consen 112 LVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPN 170 (521)
T ss_pred eeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 34555556667788889999999999999999999999999999999888877666543
No 167
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=98.15 E-value=7.4e-06 Score=54.76 Aligned_cols=63 Identities=17% Similarity=0.069 Sum_probs=48.7
Q ss_pred hHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhc----ccchh-HHhhhhHHHHHHHHH
Q psy17792 47 VFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDR----MGRRT-LHLYGLGGMFIFSIF 109 (116)
Q Consensus 47 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr----~grr~-~~~~~~~~~~~~~~~ 109 (116)
..|..+++.++.|+++.+.+....+..+...+..++.|+++|| +|||| .++.+....+++.+.
T Consensus 19 ~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~ 86 (437)
T TIGR00792 19 STYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVL 86 (437)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHH
Confidence 3456666777899999999999999999999999999999997 67755 455665555544433
No 168
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.15 E-value=5.6e-05 Score=49.79 Aligned_cols=85 Identities=16% Similarity=0.073 Sum_probs=62.8
Q ss_pred hhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhccc-chhHH
Q psy17792 18 ELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMG-RRTLH 96 (116)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~g-rr~~~ 96 (116)
.++|++.-|. +.+++..|...++....|.|.++.+.|+++.+++.......+.+.+.++..+++.+|.. +|+..
T Consensus 203 ~vw~~~~aW~-----vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~ 277 (395)
T COG2807 203 KVWRSPLAWQ-----VTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLV 277 (395)
T ss_pred ccccCchhHH-----HHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHH
Confidence 3565554343 44455556666777888889999999999999999999999999999999999999765 55555
Q ss_pred hhhhHHHHHHH
Q psy17792 97 LYGLGGMFIFS 107 (116)
Q Consensus 97 ~~~~~~~~~~~ 107 (116)
+.....+.+..
T Consensus 278 ~~~~~~~l~G~ 288 (395)
T COG2807 278 VLALLLMLVGL 288 (395)
T ss_pred HHHHHHHHHHH
Confidence 55444444443
No 169
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=98.14 E-value=3.7e-05 Score=54.28 Aligned_cols=65 Identities=12% Similarity=0.086 Sum_probs=44.4
Q ss_pred chhhhHHhHHHHHh-hcCCCcchhHHHHHHHHH-HHHHHHHHHHHhhhcccch--hHHhhhhHHHHHHH
Q psy17792 43 GINAVFYYSTALFE-SSGLSEKTAKFTTIGIGA-VMVTMTIISIPLMDRMGRR--TLHLYGLGGMFIFS 107 (116)
Q Consensus 43 ~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~l~dr~grr--~~~~~~~~~~~~~~ 107 (116)
.......+.|.+++ ++|.++.++........+ +..++.+++|+++||++++ +....+.....+..
T Consensus 345 ~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~ 413 (633)
T TIGR00805 345 AFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSY 413 (633)
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHH
Confidence 33444555665554 689998888877776665 5688999999999999844 45555554444443
No 170
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.13 E-value=4.2e-05 Score=51.26 Aligned_cols=70 Identities=14% Similarity=0.009 Sum_probs=53.5
Q ss_pred HHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccc-hhHHhhhhHHHHHH
Q psy17792 37 LSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGR-RTLHLYGLGGMFIF 106 (116)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~gr-r~~~~~~~~~~~~~ 106 (116)
.+.++..++....|.|.++++.|++..+.+...+...+..++..++.|.++||.++ |+.+....++.++.
T Consensus 11 ~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~ 81 (400)
T PF03825_consen 11 YFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALA 81 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHH
Confidence 33344445566667788899999999999999999999999999999999999864 55555544444443
No 171
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=98.12 E-value=5.5e-05 Score=50.05 Aligned_cols=58 Identities=12% Similarity=0.103 Sum_probs=48.2
Q ss_pred HHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchh
Q psy17792 37 LSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRT 94 (116)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~ 94 (116)
++....++.....+.|.+.++.|.+..+.+.......+...++.++.+.++||.||+.
T Consensus 13 ~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~ 70 (382)
T TIGR00902 13 FFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHII 70 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHH
Confidence 3333444456677788999999999999999999999999999999999999999854
No 172
>KOG1330|consensus
Probab=98.09 E-value=2.7e-05 Score=52.65 Aligned_cols=69 Identities=12% Similarity=-0.019 Sum_probs=57.1
Q ss_pred hhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHHH
Q psy17792 45 NAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITIS 113 (116)
Q Consensus 45 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~~ 113 (116)
+.+..-.+.+-+.+|.+.+..+.++....++..+.++++|+++||+.||.++..|..+...+.+..++.
T Consensus 50 ~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs 118 (493)
T KOG1330|consen 50 YTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFS 118 (493)
T ss_pred hhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHH
Confidence 334334455666789999999999999999999999999999999999999999988877777766654
No 173
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=98.07 E-value=3.3e-05 Score=50.55 Aligned_cols=38 Identities=24% Similarity=0.163 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHH
Q psy17792 75 VMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITI 112 (116)
Q Consensus 75 ~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~ 112 (116)
...+++++.|+++||+|||+++..+.++..+.....+.
T Consensus 47 ~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~ 84 (394)
T TIGR00883 47 ARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGL 84 (394)
T ss_pred HhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh
Confidence 33568899999999999999999888777766655543
No 174
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=98.07 E-value=5.7e-05 Score=50.29 Aligned_cols=66 Identities=14% Similarity=0.009 Sum_probs=59.4
Q ss_pred hhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHH
Q psy17792 45 NAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFI 110 (116)
Q Consensus 45 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~ 110 (116)
..+....|.+.+.++.+..++.........+.++.+++.+++.+|+|+|+-++.|+.++++.+.++
T Consensus 30 ~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF 95 (422)
T COG0738 30 CLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALF 95 (422)
T ss_pred hcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 345567899999999999999999999999999999999999999999999999999988887766
No 175
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.03 E-value=4.5e-05 Score=51.15 Aligned_cols=54 Identities=11% Similarity=0.100 Sum_probs=40.0
Q ss_pred hhhHHhHHHHHh-hcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhh
Q psy17792 45 NAVFYYSTALFE-SSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLY 98 (116)
Q Consensus 45 ~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~ 98 (116)
.....+.|..++ ..|++.++.+.......+..++..++.|.++||.|.||-++.
T Consensus 24 gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~ 78 (412)
T PF01306_consen 24 GIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLW 78 (412)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHH
T ss_pred HHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHH
Confidence 333334455554 589999999999999999999999999999999997775543
No 176
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=98.03 E-value=9.3e-05 Score=49.28 Aligned_cols=73 Identities=22% Similarity=0.129 Sum_probs=52.9
Q ss_pred HHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcc-----cchh-HHhhhhHHHHHHHHHH
Q psy17792 37 LSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRM-----GRRT-LHLYGLGGMFIFSIFI 110 (116)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-----grr~-~~~~~~~~~~~~~~~~ 110 (116)
++.|...++....-.|.++++.|++.++.++....... .+..+++|+++||+ |||| ++..+..+.+++...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l 85 (402)
T PRK11902 8 GFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAM 85 (402)
T ss_pred HHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHH
Confidence 44444555666677889999999999998877665554 68889999999999 8776 5666666665554443
Q ss_pred H
Q psy17792 111 T 111 (116)
Q Consensus 111 ~ 111 (116)
+
T Consensus 86 ~ 86 (402)
T PRK11902 86 A 86 (402)
T ss_pred H
Confidence 3
No 177
>PRK12382 putative transporter; Provisional
Probab=98.02 E-value=8.8e-05 Score=49.10 Aligned_cols=62 Identities=21% Similarity=0.242 Sum_probs=41.6
Q ss_pred hhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHH
Q psy17792 46 AVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIF 109 (116)
Q Consensus 46 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~ 109 (116)
....+.|.+.++.|.+. .........+...++.++.+++.||+|||+.+..+.....+....
T Consensus 234 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~ 295 (392)
T PRK12382 234 VIGTFVSLYFASKGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLL 295 (392)
T ss_pred HHHHHHHHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHH
Confidence 34445555566666543 334444556677888899999999999999888776655554433
No 178
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=98.01 E-value=9.1e-05 Score=49.10 Aligned_cols=59 Identities=15% Similarity=0.197 Sum_probs=40.2
Q ss_pred hHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHH
Q psy17792 47 VFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFS 107 (116)
Q Consensus 47 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~ 107 (116)
...+.|.+.++.|.+ +.........++..++.++.+++.||+|||+.+..+.....+..
T Consensus 235 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~ 293 (399)
T PRK05122 235 IATFITLYYAARGWD--GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGL 293 (399)
T ss_pred HHHHHHHHHHHcccc--cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 334555555555653 33344556677788899999999999999998877665554443
No 179
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=97.98 E-value=0.00013 Score=54.58 Aligned_cols=33 Identities=9% Similarity=0.079 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcccchhHHh
Q psy17792 65 AKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHL 97 (116)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~ 97 (116)
..+......+...+.++++|+++||+|||+++.
T Consensus 54 ~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~ 86 (1140)
T PRK06814 54 VTLAGAVFILPFFIFSALAGQLADKYDKAKLAK 86 (1140)
T ss_pred HHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHH
Confidence 455566677888999999999999999999753
No 180
>PRK10429 melibiose:sodium symporter; Provisional
Probab=97.97 E-value=3.5e-05 Score=52.50 Aligned_cols=60 Identities=15% Similarity=-0.010 Sum_probs=45.9
Q ss_pred HHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhh----cccch-hHHhhhhHHHHHHH
Q psy17792 48 FYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMD----RMGRR-TLHLYGLGGMFIFS 107 (116)
Q Consensus 48 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d----r~grr-~~~~~~~~~~~~~~ 107 (116)
.|...++.+..|+++...+....+..+...+..++.|+++| |+||| +.++.+....+++.
T Consensus 27 ~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~ 91 (473)
T PRK10429 27 MYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVL 91 (473)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHH
Confidence 34444555667999999999999999999999999999999 56985 45556666655543
No 181
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=97.97 E-value=0.00012 Score=48.52 Aligned_cols=68 Identities=15% Similarity=-0.003 Sum_probs=51.4
Q ss_pred HHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHH--HHHHHHHHHHHHHH-HHhhhcccchhHHhhhh
Q psy17792 33 IVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTT--IGIGAVMVTMTIIS-IPLMDRMGRRTLHLYGL 100 (116)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~-~~l~dr~grr~~~~~~~ 100 (116)
+...++.|-..++....+.|.++++.|.+..+.+... .......++.+++. ++..||.||||..+...
T Consensus 6 ~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~ 76 (390)
T TIGR02718 6 LGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPM 76 (390)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHH
Confidence 3334556666667778889999999999999888764 55678888888877 55899999998864443
No 182
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=97.95 E-value=0.00016 Score=45.57 Aligned_cols=67 Identities=19% Similarity=0.056 Sum_probs=56.8
Q ss_pred hhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHH
Q psy17792 44 INAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFIT 111 (116)
Q Consensus 44 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~ 111 (116)
.+....|.|.+.+++|++.++........+++...| ++.|.+.|++|.+.++..|.....+....+-
T Consensus 18 ~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~ 84 (250)
T PF06813_consen 18 TYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLW 84 (250)
T ss_pred ccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 456778999999999999999999999889888764 8889999999999999888887777665543
No 183
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=97.95 E-value=0.00012 Score=50.79 Aligned_cols=64 Identities=13% Similarity=0.078 Sum_probs=52.0
Q ss_pred hHHHHHh-hcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHHH
Q psy17792 50 YSTALFE-SSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITIS 113 (116)
Q Consensus 50 ~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~~ 113 (116)
..|.+.+ .+|.++...++.....++++++|+++.+++.+|+++++.+..+.++.+++.+.+++.
T Consensus 240 LlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~ 304 (524)
T PF05977_consen 240 LLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS 304 (524)
T ss_pred hhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc
Confidence 4566664 578888888889999999999999999999999999998888777777666655543
No 184
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=97.90 E-value=0.00017 Score=47.75 Aligned_cols=52 Identities=6% Similarity=0.013 Sum_probs=45.0
Q ss_pred hchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccch
Q psy17792 42 SGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRR 93 (116)
Q Consensus 42 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr 93 (116)
.+.+....+.|.+.++.|.+..+.++......+...++.++.+.++||+|||
T Consensus 18 ~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~ 69 (382)
T PRK11128 18 FAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQL 69 (382)
T ss_pred HHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcch
Confidence 3445566677888899999999999999999999999999999999999984
No 185
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=97.89 E-value=9.8e-05 Score=48.89 Aligned_cols=45 Identities=18% Similarity=-0.011 Sum_probs=32.6
Q ss_pred hHHHHHhh-cCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchh
Q psy17792 50 YSTALFES-SGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRT 94 (116)
Q Consensus 50 ~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~ 94 (116)
+.+.+.++ .|.+..+.........++.+++.++.+++.||.+|+.
T Consensus 229 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 274 (394)
T PRK11652 229 CSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM 274 (394)
T ss_pred hChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444 7888877777777777788888888889999888443
No 186
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=97.88 E-value=0.00031 Score=46.53 Aligned_cols=70 Identities=17% Similarity=0.061 Sum_probs=38.9
Q ss_pred hhhhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccch
Q psy17792 15 SMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRR 93 (116)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr 93 (116)
+++++++++..+. .....+.....++....|.|.++++.|.+.. .........+ .+.+..++++||.+||
T Consensus 184 ~~~~ll~~~~~~~-----~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~---~g~~g~~~~~d~~~r~ 253 (368)
T TIGR00903 184 EFGALAGRKDLWI-----IGAILGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAIL---AGLIGVAVIPDRVARA 253 (368)
T ss_pred HHHHHHcChhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHH---HHHHHHHHhhHHhhhh
Confidence 3566776653322 2233333444445666788888888777653 3333333333 3444457888887654
No 187
>PRK09669 putative symporter YagG; Provisional
Probab=97.86 E-value=4.9e-05 Score=51.29 Aligned_cols=60 Identities=13% Similarity=0.069 Sum_probs=46.3
Q ss_pred HHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhc----ccchh-HHhhhhHHHHHHH
Q psy17792 48 FYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDR----MGRRT-LHLYGLGGMFIFS 107 (116)
Q Consensus 48 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr----~grr~-~~~~~~~~~~~~~ 107 (116)
.|..+++.+..|++....+....+..+...+..++.|+++|| +|||| .++.+....+++.
T Consensus 30 ~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~ 94 (444)
T PRK09669 30 LFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVC 94 (444)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHH
Confidence 445555666799999999999999999999999999999998 77755 4555655554443
No 188
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=97.84 E-value=0.00037 Score=46.44 Aligned_cols=47 Identities=6% Similarity=-0.036 Sum_probs=39.8
Q ss_pred HHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhh
Q psy17792 54 LFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGL 100 (116)
Q Consensus 54 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~ 100 (116)
..+.+|.++.+.+.......++..++++..+++.||.++|+++..+.
T Consensus 232 ~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~ 278 (393)
T PRK11195 232 APVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI 278 (393)
T ss_pred HHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH
Confidence 33457888888888888999999999999999999999888776664
No 189
>KOG0252|consensus
Probab=97.83 E-value=2.7e-05 Score=52.74 Aligned_cols=88 Identities=17% Similarity=0.170 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHH-----HHHHH----HHHHHHHHHHHHHhhhcccchhHHh
Q psy17792 27 KPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKF-----TTIGI----GAVMVTMTIISIPLMDRMGRRTLHL 97 (116)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~----~~~~~~~~~~~~~l~dr~grr~~~~ 97 (116)
+.++. ....++..-..++....+...+++..|..+.+... ..... ....++|.++...++|++|||+..+
T Consensus 304 ~~Llg-t~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~ 382 (538)
T KOG0252|consen 304 KHLLG-TAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQL 382 (538)
T ss_pred HHHHH-HHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHH
Confidence 34444 44444444444566777888999988776543222 12222 2223445556667899999999999
Q ss_pred hhhHHHHHHHHHHHHHHc
Q psy17792 98 YGLGGMFIFSIFITISLL 115 (116)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~ 115 (116)
.|+.++.+..+.++..|+
T Consensus 383 ~GF~~~~i~~~~~~~~y~ 400 (538)
T KOG0252|consen 383 MGFFIMTIFFFVIAGPYN 400 (538)
T ss_pred hhHHHHHHHHHHHcCCcc
Confidence 999999999998887764
No 190
>PRK10054 putative transporter; Provisional
Probab=97.82 E-value=0.0001 Score=49.09 Aligned_cols=49 Identities=16% Similarity=0.040 Sum_probs=30.9
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHH
Q psy17792 59 GLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFS 107 (116)
Q Consensus 59 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~ 107 (116)
+.+............+.........+++.||.++|+.+..+.....+..
T Consensus 240 ~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~ 288 (395)
T PRK10054 240 DFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGL 288 (395)
T ss_pred chHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHH
Confidence 3434333444444445555666778899999999998877665444433
No 191
>TIGR00901 2A0125 AmpG-related permease.
Probab=97.77 E-value=0.00019 Score=46.88 Aligned_cols=60 Identities=22% Similarity=0.175 Sum_probs=42.1
Q ss_pred hhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcc-----cchhHH-hhhhHHHHHHH
Q psy17792 46 AVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRM-----GRRTLH-LYGLGGMFIFS 107 (116)
Q Consensus 46 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-----grr~~~-~~~~~~~~~~~ 107 (116)
....-.|.+.++.|.+..+.+..... .+...+ .++.|.++||+ ||||.+ +.+.+..++..
T Consensus 6 ~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~ 71 (356)
T TIGR00901 6 LVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLL 71 (356)
T ss_pred hHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHH
Confidence 34556788899999999887777544 333333 88999999998 898865 44554444443
No 192
>PRK09848 glucuronide transporter; Provisional
Probab=97.75 E-value=0.00014 Score=49.07 Aligned_cols=57 Identities=11% Similarity=0.206 Sum_probs=44.0
Q ss_pred hHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcc----cchhHH-hhhhHHH
Q psy17792 47 VFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRM----GRRTLH-LYGLGGM 103 (116)
Q Consensus 47 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~----grr~~~-~~~~~~~ 103 (116)
..|..+++.+..|++..+.+.......+...+..++.|+++||. |||+.. ..+.+..
T Consensus 28 ~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~ 89 (448)
T PRK09848 28 ALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPL 89 (448)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHH
Confidence 34455556666899999999999999999999999999999996 777654 4444433
No 193
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=97.72 E-value=0.00054 Score=46.56 Aligned_cols=45 Identities=18% Similarity=0.078 Sum_probs=35.7
Q ss_pred hhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy17792 46 AVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRM 90 (116)
Q Consensus 46 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~ 90 (116)
....+.|.+.++.|.+..+........+++..++.++.++++||.
T Consensus 259 ~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~ 303 (455)
T TIGR00892 259 APIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLK 303 (455)
T ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344455656677899888888888888888999999999999973
No 194
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=97.69 E-value=0.00025 Score=53.02 Aligned_cols=58 Identities=12% Similarity=-0.088 Sum_probs=43.0
Q ss_pred HHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHH
Q psy17792 48 FYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFI 105 (116)
Q Consensus 48 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~ 105 (116)
.+..+++.+.+|.+....++......++.+++.++.++++|+.++++.+..+.++.++
T Consensus 246 ~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~ 303 (1140)
T PRK06814 246 SQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGL 303 (1140)
T ss_pred HHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHH
Confidence 3444444455788888888888999999999999999999888777655544444333
No 195
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=97.67 E-value=0.0009 Score=45.00 Aligned_cols=62 Identities=16% Similarity=0.097 Sum_probs=44.5
Q ss_pred hhHHhHHHHHhhcC-CCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHH
Q psy17792 46 AVFYYSTALFESSG-LSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFS 107 (116)
Q Consensus 46 ~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~ 107 (116)
....|.+..+++.| .+............+.-++.-...+++..|+|.|+++..+.+..++=.
T Consensus 225 ~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~ 287 (400)
T PF03825_consen 225 AYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRW 287 (400)
T ss_pred HHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 33445566677777 566555555556666677777889999999999999988877765533
No 196
>KOG0569|consensus
Probab=97.67 E-value=0.0016 Score=44.82 Aligned_cols=47 Identities=17% Similarity=0.055 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHHH
Q psy17792 67 FTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITIS 113 (116)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~~ 113 (116)
.......+++++|++..++++||+|||..+....+...+......++
T Consensus 64 ~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s 110 (485)
T KOG0569|consen 64 LIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLS 110 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 45556688999999999999999999988887776666665555444
No 197
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=97.66 E-value=0.0012 Score=44.19 Aligned_cols=90 Identities=17% Similarity=0.194 Sum_probs=59.9
Q ss_pred hhhhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHHhh-cCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccch
Q psy17792 15 SMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFES-SGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRR 93 (116)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr 93 (116)
...++++++..+.-. +..+++...+. ....+.+.+..+ .|.+..++.......+.+..+|-+++.++..|+...
T Consensus 228 ~~~~l~~~~~~~~gv-l~~FlYVG~Ev----a~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~ 302 (422)
T COG0738 228 GLSSLFQNKHLRLGV-LAIFLYVGAEV----AIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPE 302 (422)
T ss_pred hHHHHHhChHHHHHH-HHHHHHHhHHH----HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence 456778776444322 22232232222 233344555544 788888899999999999999999999999999999
Q ss_pred hHHhhhhHHHHHHHHH
Q psy17792 94 TLHLYGLGGMFIFSIF 109 (116)
Q Consensus 94 ~~~~~~~~~~~~~~~~ 109 (116)
|.+...+++..+.++.
T Consensus 303 k~Laf~a~~~ill~~~ 318 (422)
T COG0738 303 KYLAFYALIAILLLLA 318 (422)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9887766554444433
No 198
>KOG2504|consensus
Probab=97.63 E-value=0.00099 Score=46.16 Aligned_cols=86 Identities=27% Similarity=0.221 Sum_probs=62.2
Q ss_pred hhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchh--
Q psy17792 17 SELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRT-- 94 (116)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~-- 94 (116)
.++++++ .++...........++....+++|.+.++.|.+..+........++...++-++.|+++|+...++
T Consensus 292 ~~ll~~~-----~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~ 366 (509)
T KOG2504|consen 292 LSLLKDP-----KFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALV 366 (509)
T ss_pred HHHHcCc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHH
Confidence 3555553 333344444455556667777888888899999999999999999999999999999999998433
Q ss_pred HHhhhhHHHHHHH
Q psy17792 95 LHLYGLGGMFIFS 107 (116)
Q Consensus 95 ~~~~~~~~~~~~~ 107 (116)
+...+.++.++..
T Consensus 367 ~~~~~ll~~gl~~ 379 (509)
T KOG2504|consen 367 LFLLTLLIAGLAR 379 (509)
T ss_pred HHHHHHHHHHHHH
Confidence 4445555555544
No 199
>PRK11010 ampG muropeptide transporter; Validated
Probab=97.61 E-value=0.0013 Score=45.30 Aligned_cols=70 Identities=20% Similarity=0.092 Sum_probs=44.9
Q ss_pred HHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcc-----cchhH-HhhhhHHHHHHHHHH
Q psy17792 39 QQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRM-----GRRTL-HLYGLGGMFIFSIFI 110 (116)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-----grr~~-~~~~~~~~~~~~~~~ 110 (116)
.+...........|...++.|.+..+.......... .++.++++.++||+ |||+. +..+.+...++...+
T Consensus 23 ~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~ 98 (491)
T PRK11010 23 ASGLPLALTSGTLQAWMTVENIDLKTIGFFSLVGQA--YVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAM 98 (491)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHH
Confidence 333344455566788888888888776655322222 26889999999999 99985 445555554444333
No 200
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=97.60 E-value=0.00058 Score=45.84 Aligned_cols=49 Identities=12% Similarity=0.190 Sum_probs=33.2
Q ss_pred hhhHHhHHHHHhh-cCCCcchhHHHHHHHHHHHHHHHHHHHHhh-hcccch
Q psy17792 45 NAVFYYSTALFES-SGLSEKTAKFTTIGIGAVMVTMTIISIPLM-DRMGRR 93 (116)
Q Consensus 45 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~-dr~grr 93 (116)
.....+.|.++++ .|.+..+..+.......+..+++.+.+.+. |+.++|
T Consensus 235 ~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~ 285 (413)
T PRK15403 235 MSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPR 285 (413)
T ss_pred HHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchh
Confidence 3444456766655 588888887777777778888888777765 444444
No 201
>KOG3762|consensus
Probab=97.57 E-value=0.00023 Score=49.28 Aligned_cols=63 Identities=19% Similarity=0.114 Sum_probs=53.2
Q ss_pred chhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHH
Q psy17792 43 GINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFI 105 (116)
Q Consensus 43 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~ 105 (116)
..+.+....+.+.+++|+++.+.+.+....-++.+.+.+++|+++||+.+|+.++.+..+..+
T Consensus 26 ~~g~l~pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v 88 (618)
T KOG3762|consen 26 RFGSLFPLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSV 88 (618)
T ss_pred cccccchHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 345667788889999999999999999999999999999999999999988877766555444
No 202
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=97.57 E-value=0.0012 Score=44.11 Aligned_cols=59 Identities=12% Similarity=-0.027 Sum_probs=33.2
Q ss_pred HhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhh-hcccchhHHhhhhHHHHHHH
Q psy17792 49 YYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLM-DRMGRRTLHLYGLGGMFIFS 107 (116)
Q Consensus 49 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~-dr~grr~~~~~~~~~~~~~~ 107 (116)
.+.|.+.++.+.++.+.........+....+....++.. ||++.++.+..+....++..
T Consensus 229 ~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 288 (400)
T PRK11646 229 LMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSM 288 (400)
T ss_pred HhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 456776666555666665555555555555555555555 55665665555554444433
No 203
>PF13347 MFS_2: MFS/sugar transport protein
Probab=97.54 E-value=6.2e-05 Score=50.56 Aligned_cols=64 Identities=19% Similarity=0.055 Sum_probs=49.7
Q ss_pred hHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhh----cccchhHHh-hhhHHHHHHHHHH
Q psy17792 47 VFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMD----RMGRRTLHL-YGLGGMFIFSIFI 110 (116)
Q Consensus 47 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d----r~grr~~~~-~~~~~~~~~~~~~ 110 (116)
..+..+++.+..|+++...+.......+...+..++.|.++| |+|||+..+ .|....+++...+
T Consensus 21 ~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~ll 89 (428)
T PF13347_consen 21 SSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLL 89 (428)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHh
Confidence 345666777788999988888888888999999999999999 899887664 5666665554443
No 204
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=97.52 E-value=7.9e-06 Score=54.91 Aligned_cols=49 Identities=24% Similarity=0.171 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHHH
Q psy17792 65 AKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITIS 113 (116)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~~ 113 (116)
..+......++..+|++++|+++||+|||+.+..+.....++.++.+++
T Consensus 48 ~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~ 96 (451)
T PF00083_consen 48 SSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFA 96 (451)
T ss_pred HHHHHHHHHhhhccccccccccccccccccccccccccccccccccccc
Confidence 4567778889999999999999999999999998888777776665544
No 205
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=97.49 E-value=0.00026 Score=47.65 Aligned_cols=45 Identities=22% Similarity=0.025 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHH
Q psy17792 66 KFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFI 110 (116)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~ 110 (116)
+......-+.-.+...+.+++.+|+|.|+.++.+..++.+=....
T Consensus 262 G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~ 306 (412)
T PF01306_consen 262 GYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGS 306 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHH
Confidence 344444455567777788999999999999888776666544333
No 206
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=97.44 E-value=0.0019 Score=44.22 Aligned_cols=75 Identities=9% Similarity=-0.194 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhccc-----chhHHhhhhHH
Q psy17792 28 PLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMG-----RRTLHLYGLGG 102 (116)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~g-----rr~~~~~~~~~ 102 (116)
.....+...++.+-..........|.+.+++|++..+.........+...+-.+ +|.++||++ ||+.++.+.+.
T Consensus 26 ~~~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l 104 (468)
T TIGR00788 26 VVLAIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLL 104 (468)
T ss_pred hHHHHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHH
Confidence 333334433444444433334444555567899998887777777777666544 999999997 66666666555
Q ss_pred H
Q psy17792 103 M 103 (116)
Q Consensus 103 ~ 103 (116)
.
T Consensus 105 ~ 105 (468)
T TIGR00788 105 G 105 (468)
T ss_pred H
Confidence 4
No 207
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=97.44 E-value=0.00049 Score=38.38 Aligned_cols=40 Identities=25% Similarity=0.303 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHH
Q psy17792 71 GIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFI 110 (116)
Q Consensus 71 ~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~ 110 (116)
...++..++.++.+++.||+|||+.+..+.....+.....
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~ 45 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMF 45 (141)
T ss_pred eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHH
Confidence 3456788889999999999999999887766655554433
No 208
>KOG4686|consensus
Probab=97.44 E-value=0.0016 Score=42.40 Aligned_cols=46 Identities=13% Similarity=0.091 Sum_probs=39.1
Q ss_pred HHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhh
Q psy17792 54 LFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYG 99 (116)
Q Consensus 54 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~ 99 (116)
+.+++|+++..++...........+.+++.|.++||.||+-+.+.+
T Consensus 291 F~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~ 336 (459)
T KOG4686|consen 291 FQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVAS 336 (459)
T ss_pred HHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHH
Confidence 4467999998888888888888999999999999999999766544
No 209
>KOG0255|consensus
Probab=97.38 E-value=0.0041 Score=42.98 Aligned_cols=91 Identities=18% Similarity=0.103 Sum_probs=56.5
Q ss_pred chhhhhhccccchHHHHHHHHHHHHHHhhchhhhHHh-HHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy17792 14 ISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYY-STALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGR 92 (116)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~gr 92 (116)
..+.++++.++.++.++.....++... ..|+ .+.....+|.+. .......+....+.....+...|++||
T Consensus 309 ~~~~~l~~~~~l~~~~~~~~~~~~~~~------~~y~gl~~~~~~lg~~~---~~~~~~~~~~~~p~~~~~~~~~~~~gR 379 (521)
T KOG0255|consen 309 ISFLDLFRTPRLRYRTLYLLFIWFVFS------LVYYGLSLNVSGLGGNI---YLNFTLSGLVELPAYFRNGLLLPEFGR 379 (521)
T ss_pred CchhhhhcCHHHHHHHHHHHHHHHHHh------HHHHhhhhhhhhcCchH---HHHHHHHHHHHhhHHHHHHHHHHHhCc
Confidence 456788887766776666555543222 2222 122222333332 333444444677777777899999999
Q ss_pred hhHHhhhhHHHHHHHHHHHHH
Q psy17792 93 RTLHLYGLGGMFIFSIFITIS 113 (116)
Q Consensus 93 r~~~~~~~~~~~~~~~~~~~~ 113 (116)
|.....+.....++++..++.
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~ 400 (521)
T KOG0255|consen 380 RPPLFLSLFLAGIGLLLFGWL 400 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999888888777766654
No 210
>KOG3764|consensus
Probab=97.38 E-value=0.00041 Score=46.49 Aligned_cols=56 Identities=18% Similarity=0.185 Sum_probs=48.9
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHHH
Q psy17792 58 SGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITIS 113 (116)
Q Consensus 58 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~~ 113 (116)
.+.+.++.+++.+...+.+++.+++.|.+.||+|+|-+++.|...+..+.+++++.
T Consensus 101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg 156 (464)
T KOG3764|consen 101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG 156 (464)
T ss_pred ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHc
Confidence 34555677888899999999999999999999999999999999988888887764
No 211
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=97.37 E-value=0.002 Score=43.23 Aligned_cols=63 Identities=16% Similarity=0.027 Sum_probs=49.6
Q ss_pred hHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhh-cccchhHHhhhhHHHHHHHHHHHH
Q psy17792 50 YSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMD-RMGRRTLHLYGLGGMFIFSIFITI 112 (116)
Q Consensus 50 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d-r~grr~~~~~~~~~~~~~~~~~~~ 112 (116)
.-||--+-+|++..+...++.....+.+++....+++.. |.+++++-.+|+.+...+...+.+
T Consensus 231 LEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~ 294 (403)
T PF03209_consen 231 LEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIIL 294 (403)
T ss_pred cCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 445555668999999999999999999999999887665 778888777888877776665543
No 212
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=97.34 E-value=0.0023 Score=44.05 Aligned_cols=44 Identities=16% Similarity=-0.085 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccc-hhHHhhhhHHHHHHHHHH
Q psy17792 67 FTTIGIGAVMVTMTIISIPLMDRMGR-RTLHLYGLGGMFIFSIFI 110 (116)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~l~dr~gr-r~~~~~~~~~~~~~~~~~ 110 (116)
+.....++...+.+++..++.+|+|+ |++...+.++.++++...
T Consensus 309 ~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~ 353 (477)
T TIGR01301 309 FGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAAT 353 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 34455566667777888999999995 666677755555554443
No 213
>KOG2504|consensus
Probab=97.32 E-value=0.0025 Score=44.23 Aligned_cols=65 Identities=15% Similarity=0.098 Sum_probs=55.1
Q ss_pred HhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHHH
Q psy17792 49 YYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITIS 113 (116)
Q Consensus 49 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~~ 113 (116)
.+.+.+.++++.+..+..+...+.........++.+.+.||+|.|++.+.|.++..++++.-.++
T Consensus 67 v~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~ 131 (509)
T KOG2504|consen 67 LLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFA 131 (509)
T ss_pred hhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHH
Confidence 45577888899998888899999999999999999999999999999999888877776655443
No 214
>KOG0637|consensus
Probab=97.31 E-value=0.00021 Score=48.41 Aligned_cols=84 Identities=18% Similarity=0.116 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhc----ccchhHHhhh-hH
Q psy17792 27 KPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDR----MGRRTLHLYG-LG 101 (116)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr----~grr~~~~~~-~~ 101 (116)
+.++....+.+..++....-..|. |-+++++|.+.+.....-...-+.+++..++.|..+|| +||||.++.. ..
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~-tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYL-TPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc-cHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 445555556666666654444555 44566789988765555555556677778888999995 7898877654 44
Q ss_pred HHHHHHHHHH
Q psy17792 102 GMFIFSIFIT 111 (116)
Q Consensus 102 ~~~~~~~~~~ 111 (116)
+..+.+..++
T Consensus 111 ~i~~~l~Lig 120 (498)
T KOG0637|consen 111 LIAVSLFLIG 120 (498)
T ss_pred HHHHHHhhhh
Confidence 4444444443
No 215
>KOG2563|consensus
Probab=97.22 E-value=0.0056 Score=41.77 Aligned_cols=65 Identities=22% Similarity=0.245 Sum_probs=47.3
Q ss_pred HhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHH
Q psy17792 40 QFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSI 108 (116)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~ 108 (116)
||..|..+..+...++ | +.....|.+.++.+..++..+.+.|+.||+|-|.....+..+..+...
T Consensus 60 qWI~ya~i~n~~~~~Y---g-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~ 124 (480)
T KOG2563|consen 60 QWIQYAPINNYVNSFY---G-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAW 124 (480)
T ss_pred hheeehhHHHHHHHHh---c-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHH
Confidence 3444444443333333 4 555677889999999999999999999999999988888776665543
No 216
>KOG0253|consensus
Probab=97.07 E-value=0.0022 Score=43.05 Aligned_cols=63 Identities=22% Similarity=0.102 Sum_probs=48.2
Q ss_pred hHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHH
Q psy17792 50 YSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITI 112 (116)
Q Consensus 50 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~ 112 (116)
..|..-..-|.+..+...+......++.+++..+|...|++|||+.+..+.....+...+-+.
T Consensus 100 i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~ 162 (528)
T KOG0253|consen 100 ILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGA 162 (528)
T ss_pred HHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcC
Confidence 334333345666777778888889999999999999999999999998887776665554443
No 217
>PRK11462 putative transporter; Provisional
Probab=97.07 E-value=0.004 Score=42.58 Aligned_cols=61 Identities=16% Similarity=0.067 Sum_probs=46.2
Q ss_pred HHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhc----ccchhHH-hhhhHHHHHHHH
Q psy17792 48 FYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDR----MGRRTLH-LYGLGGMFIFSI 108 (116)
Q Consensus 48 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr----~grr~~~-~~~~~~~~~~~~ 108 (116)
.|...++.+..|+++...+....+.-+...+..++.|+++|| +|||+.. +.+....++...
T Consensus 30 ~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~ 95 (460)
T PRK11462 30 LYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCV 95 (460)
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHH
Confidence 344445556789999999999999999999999999999996 6887655 456555555443
No 218
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=97.05 E-value=0.0049 Score=44.10 Aligned_cols=70 Identities=13% Similarity=0.048 Sum_probs=51.4
Q ss_pred chhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhc-ccchhHHhhhhHHHHHHHHHHHH
Q psy17792 43 GINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDR-MGRRTLHLYGLGGMFIFSIFITI 112 (116)
Q Consensus 43 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr-~grr~~~~~~~~~~~~~~~~~~~ 112 (116)
.|+....+..++.+.+|.+...+...........-+..+++|+++|+ +||++.+..+.+...+...++++
T Consensus 3 yYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai 73 (654)
T TIGR00926 3 YYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSF 73 (654)
T ss_pred eeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 34444556666677788888877777777777778888899999996 79999998887776666555443
No 219
>KOG2325|consensus
Probab=97.03 E-value=0.003 Score=43.45 Aligned_cols=59 Identities=7% Similarity=-0.026 Sum_probs=44.3
Q ss_pred HHHHh-hcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccc-hhHHhhhhHHHHHHHHHH
Q psy17792 52 TALFE-SSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGR-RTLHLYGLGGMFIFSIFI 110 (116)
Q Consensus 52 ~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~gr-r~~~~~~~~~~~~~~~~~ 110 (116)
||..+ +.+.+.+..++..+...++..++++.+|+-..|-+. |+.++.|++++.++.++.
T Consensus 59 pYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY 119 (488)
T KOG2325|consen 59 PYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLY 119 (488)
T ss_pred hhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHH
Confidence 44443 356666777888899999999999999999999985 666666666666655554
No 220
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=96.76 E-value=0.022 Score=38.91 Aligned_cols=61 Identities=20% Similarity=0.092 Sum_probs=48.5
Q ss_pred HHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHHH
Q psy17792 53 ALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITIS 113 (116)
Q Consensus 53 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~~ 113 (116)
.+..+.|+++...+..-....+.++.+++..+++.+|+|-.+.-.++......+......+
T Consensus 283 ~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~ 343 (432)
T PF06963_consen 283 AYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVS 343 (432)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHH
Confidence 3344559999888888888899999999999999999998888888877666555544433
No 221
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=96.69 E-value=0.0068 Score=41.61 Aligned_cols=61 Identities=20% Similarity=0.119 Sum_probs=46.3
Q ss_pred hHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhc----ccchhH-HhhhhHHHHHHHHHH
Q psy17792 50 YSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDR----MGRRTL-HLYGLGGMFIFSIFI 110 (116)
Q Consensus 50 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr----~grr~~-~~~~~~~~~~~~~~~ 110 (116)
.+-++.+..|+++..++....+.-+...+..++.|.++|| +||+|. ++++.+..++...+.
T Consensus 35 Ll~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~ 100 (467)
T COG2211 35 LLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLL 100 (467)
T ss_pred HHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHH
Confidence 3334445689999999988999999999999999999995 677654 456767666655443
No 222
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=96.64 E-value=0.00047 Score=48.04 Aligned_cols=72 Identities=14% Similarity=-0.018 Sum_probs=0.0
Q ss_pred hhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHH
Q psy17792 41 FSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITI 112 (116)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~ 112 (116)
........--.+++.++++++..+++++.....++..+..++..+..+|..|.+++-.|.+++++..+++++
T Consensus 16 ~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~l 87 (539)
T PF03137_consen 16 MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFAL 87 (539)
T ss_dssp ------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhc
Confidence 333334444567888899999999999999999999999999999999988888988999998888877765
No 223
>KOG2532|consensus
Probab=96.63 E-value=0.0084 Score=41.27 Aligned_cols=54 Identities=11% Similarity=-0.015 Sum_probs=44.8
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHH
Q psy17792 58 SGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFIT 111 (116)
Q Consensus 58 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~ 111 (116)
.+.+..+.+........+.+++.++++++.||+|-|+++..+.++.++..++.-
T Consensus 68 ~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P 121 (466)
T KOG2532|consen 68 YDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTP 121 (466)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHH
Confidence 345556677888888999999999999999999999999988887777666553
No 224
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=96.60 E-value=0.026 Score=37.69 Aligned_cols=64 Identities=17% Similarity=-0.025 Sum_probs=54.8
Q ss_pred hhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHH
Q psy17792 44 INAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFS 107 (116)
Q Consensus 44 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~ 107 (116)
...+....+.+.++.|++.+.++..+.+.-+.....+++.+++.+|+|.++.+..+.+..++..
T Consensus 28 itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~ 91 (395)
T COG2807 28 ITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGI 91 (395)
T ss_pred hhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3455667788889999999999999999999999999999999999999998888776655543
No 225
>KOG3626|consensus
Probab=96.49 E-value=0.037 Score=40.12 Aligned_cols=60 Identities=15% Similarity=0.129 Sum_probs=39.3
Q ss_pred HHHHHHHHhhchhhhHHhHH-HHHhhcCCCcchhHHHHHHHHHH-HHHHHHHHHHhhhcccc
Q psy17792 33 IVMQLSQQFSGINAVFYYST-ALFESSGLSEKTAKFTTIGIGAV-MVTMTIISIPLMDRMGR 92 (116)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~l~dr~gr 92 (116)
..+........+.....|.| |+.+++|.+...+..+.....+. ..+|.+++|++..|+.-
T Consensus 397 ~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl 458 (735)
T KOG3626|consen 397 VVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKL 458 (735)
T ss_pred HHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecc
Confidence 33344444444444444445 56667999999888877666554 56777788999998753
No 226
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=96.47 E-value=0.057 Score=33.56 Aligned_cols=57 Identities=21% Similarity=0.125 Sum_probs=40.9
Q ss_pred hhHHhHHHHHhhcCCCc--chhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHH
Q psy17792 46 AVFYYSTALFESSGLSE--KTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGG 102 (116)
Q Consensus 46 ~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~ 102 (116)
......+....+.+.+. ...........+....+.++.|.+.||.|||+.+..+...
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 78 (338)
T COG0477 20 LLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLL 78 (338)
T ss_pred hHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHH
Confidence 33445566666665554 3566777777778888889999999999999777766644
No 227
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=96.30 E-value=0.016 Score=39.78 Aligned_cols=52 Identities=6% Similarity=-0.250 Sum_probs=45.1
Q ss_pred hhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHH
Q psy17792 56 ESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFS 107 (116)
Q Consensus 56 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~ 107 (116)
+.+|.++.+.+......+++.+++....++..+|++.|+++..+.+..++..
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~ 332 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSS 332 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 4579999999888888889999999999999999999999988877766654
No 228
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=96.22 E-value=0.065 Score=31.52 Aligned_cols=69 Identities=10% Similarity=0.172 Sum_probs=44.9
Q ss_pred HHHhhchhhhHHhHHHHHhhcCC------CcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHH
Q psy17792 38 SQQFSGINAVFYYSTALFESSGL------SEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIF 106 (116)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~g~------~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~ 106 (116)
+..+.++.........++++.+. ++........+......+.+++.+.+.+++|.|+.++.|.+...+.
T Consensus 6 ~~~Ftaf~t~~~i~~svi~s~~~~~~~~i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y 80 (156)
T PF05978_consen 6 MFLFTAFQTQSFIQESVIHSVHERNPSSISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIY 80 (156)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhcCcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33344445554455555554332 2223344556667778888899999999999999998887766543
No 229
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=96.16 E-value=0.14 Score=36.54 Aligned_cols=64 Identities=13% Similarity=0.146 Sum_probs=40.5
Q ss_pred hhhhHHhHHHHHhhcCCCcc---hhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHh-hhhHHHHHHH
Q psy17792 44 INAVFYYSTALFESSGLSEK---TAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHL-YGLGGMFIFS 107 (116)
Q Consensus 44 ~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~-~~~~~~~~~~ 107 (116)
+....+|+..+..-.+.+.. +..+.....+.+...+.++.+.+..+++|-|..+ .+...+.+++
T Consensus 327 ~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~ 394 (599)
T PF06609_consen 327 FSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFC 394 (599)
T ss_pred HHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHH
Confidence 33345555444444444432 4556677778888888899999999888777654 5555555443
No 230
>KOG4332|consensus
Probab=95.83 E-value=0.0053 Score=39.71 Aligned_cols=61 Identities=15% Similarity=0.033 Sum_probs=39.5
Q ss_pred hHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHH
Q psy17792 47 VFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFS 107 (116)
Q Consensus 47 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~ 107 (116)
...|.-+++++.|....+.................+.|-++||.|||+..+..++...+++
T Consensus 56 QgPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC 116 (454)
T KOG4332|consen 56 QGPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC 116 (454)
T ss_pred cCceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH
Confidence 3334444556667776665555444444556666778889999999998776665555444
No 231
>KOG2563|consensus
Probab=95.59 E-value=0.28 Score=33.89 Aligned_cols=39 Identities=13% Similarity=-0.016 Sum_probs=32.2
Q ss_pred hhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchh
Q psy17792 56 ESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRT 94 (116)
Q Consensus 56 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~ 94 (116)
...|.+...++.......+.+.+++.++|.+.||.+.=+
T Consensus 294 ~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk 332 (480)
T KOG2563|consen 294 CPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFK 332 (480)
T ss_pred ccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 345677677888888889999999999999999987544
No 232
>KOG2816|consensus
Probab=95.12 E-value=0.38 Score=33.41 Aligned_cols=37 Identities=24% Similarity=0.345 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHH
Q psy17792 72 IGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSI 108 (116)
Q Consensus 72 ~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~ 108 (116)
.++..++.+...|.++||+|||..+........+...
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~ 107 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPAL 107 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHH
Confidence 3567788888999999999999998877665554433
No 233
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=95.04 E-value=0.0062 Score=42.62 Aligned_cols=59 Identities=10% Similarity=-0.016 Sum_probs=0.0
Q ss_pred HHHHHHHhhchhhhHHhHH-HHHhhcCCCcchhHHHHHHHH-HHHHHHHHHHHHhhhcccc
Q psy17792 34 VMQLSQQFSGINAVFYYST-ALFESSGLSEKTAKFTTIGIG-AVMVTMTIISIPLMDRMGR 92 (116)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~l~dr~gr 92 (116)
.+..............|.| |+..+++.++.++..+..... -++.+|.+++|++.+|+.-
T Consensus 311 ~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl 371 (539)
T PF03137_consen 311 ILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKL 371 (539)
T ss_dssp -------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecC
Confidence 3333333334444444555 555578999887766655444 4677888899999999853
No 234
>KOG3574|consensus
Probab=94.94 E-value=0.23 Score=33.89 Aligned_cols=79 Identities=15% Similarity=0.222 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhh-----cccchhHHhh-h
Q psy17792 26 RKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMD-----RMGRRTLHLY-G 99 (116)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d-----r~grr~~~~~-~ 99 (116)
++.+....++ +..|-..++... -.|++++.-|.+-++........+ -.-.-+++..++| |+||||..+. +
T Consensus 30 ~~~illLl~L-YllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~GrrksWvvp~ 105 (510)
T KOG3574|consen 30 RSSILLLLFL-YLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRRKSWVVPC 105 (510)
T ss_pred hhhHHHHHHH-HHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhhccccceeeeh
Confidence 4445444444 455555555555 789999877777655443333222 1222334555666 9999986654 3
Q ss_pred hHHHHHHHH
Q psy17792 100 LGGMFIFSI 108 (116)
Q Consensus 100 ~~~~~~~~~ 108 (116)
..+.+..+.
T Consensus 106 q~llG~~ml 114 (510)
T KOG3574|consen 106 QYLLGLFML 114 (510)
T ss_pred HHHHHHHHH
Confidence 344444433
No 235
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=94.83 E-value=0.89 Score=31.74 Aligned_cols=52 Identities=12% Similarity=0.167 Sum_probs=36.0
Q ss_pred hhHHHHHHHHHHHHHH-HHHHHHhhhcccchhHHhhhhHHHHHHHHHHHHHHc
Q psy17792 64 TAKFTTIGIGAVMVTM-TIISIPLMDRMGRRTLHLYGLGGMFIFSIFITISLL 115 (116)
Q Consensus 64 ~~~~~~~~~~~~~~~~-~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~ 115 (116)
...+.-....+...+. .++.+++++|++|++++-.....+......+++..+
T Consensus 44 ~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~ 96 (472)
T TIGR00769 44 IIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIY 96 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444 778899999999999998877777777666666543
No 236
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=94.60 E-value=0.51 Score=32.86 Aligned_cols=42 Identities=14% Similarity=0.037 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhh-HHHHHHHH
Q psy17792 67 FTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGL-GGMFIFSI 108 (116)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~-~~~~~~~~ 108 (116)
....+..+...+..++.|-++|+-|+||.++..+ .++.++..
T Consensus 74 ~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~ 116 (477)
T PF11700_consen 74 YANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATA 116 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHH
Confidence 4556667778888888999999999888766543 33333333
No 237
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=94.17 E-value=0.71 Score=31.62 Aligned_cols=69 Identities=9% Similarity=-0.025 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCC---cchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHh
Q psy17792 29 LIIGIVMQLSQQFSGINAVFYYSTALFESSGLS---EKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHL 97 (116)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~ 97 (116)
.++...+++....+|+.-+.+|.-.+.++..-+ ..-.+..-+...+.+.++++..|++-.++.+-.-+.
T Consensus 248 ~ll~WSlWWa~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~ 319 (412)
T PF01770_consen 248 RLLLWSLWWAFATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELA 319 (412)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHH
Confidence 334455667777788777777777777776211 222344555566667777788888866666654443
No 238
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=94.08 E-value=0.61 Score=32.89 Aligned_cols=72 Identities=13% Similarity=0.190 Sum_probs=36.1
Q ss_pred hhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCC-c----chhHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy17792 17 SELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLS-E----KTAKFTTIGIGAVMVTMTIISIPLMDRMG 91 (116)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~----~~~~~~~~~~~~~~~~~~~~~~~l~dr~g 91 (116)
.|+||.|+ ++.++..++....|........ .++...|.- + .-.........+.+.++...++++-..+|
T Consensus 252 gDVFR~P~--~~~lls~lvG~G~Qll~~~~~~----~~~a~~g~~~~~~rg~l~t~~i~~y~~~~~iaGy~S~~~yk~~~ 325 (521)
T PF02990_consen 252 GDVFRPPK--HPMLLSALVGTGIQLLFMALVT----LFFAALGFLSPNNRGSLLTAAIILYALTSFIAGYVSARLYKSFG 325 (521)
T ss_pred HHHhcCcC--CchHHHhHhcchhhhhHHHHHH----HHHHHhhhccccCcchHHHHHHHHHHHHhhHHHHHHHHHHHHcC
Confidence 37898885 4455555555555544432221 222222321 1 11223344445566677777777777676
Q ss_pred chh
Q psy17792 92 RRT 94 (116)
Q Consensus 92 rr~ 94 (116)
.|+
T Consensus 326 g~~ 328 (521)
T PF02990_consen 326 GKK 328 (521)
T ss_pred CCc
Confidence 543
No 239
>KOG3626|consensus
Probab=93.96 E-value=0.067 Score=38.88 Aligned_cols=84 Identities=12% Similarity=-0.025 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHH
Q psy17792 29 LIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSI 108 (116)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~ 108 (116)
.+.+.....+.+......+..-...+.++++++..+.+++...+.++..+...+..+..-|..|.+++-.|.+.+++..+
T Consensus 98 fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsl 177 (735)
T KOG3626|consen 98 FLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSL 177 (735)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHH
Confidence 33444444444443334445556677788999999999988999999999999999999999999999999999988887
Q ss_pred HHHH
Q psy17792 109 FITI 112 (116)
Q Consensus 109 ~~~~ 112 (116)
+.++
T Consensus 178 l~al 181 (735)
T KOG3626|consen 178 LFAL 181 (735)
T ss_pred HHhC
Confidence 7654
No 240
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=93.81 E-value=0.77 Score=32.00 Aligned_cols=42 Identities=10% Similarity=-0.097 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchhH-------HhhhhHHHHHHHH
Q psy17792 67 FTTIGIGAVMVTMTIISIPLMDRMGRRTL-------HLYGLGGMFIFSI 108 (116)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~l~dr~grr~~-------~~~~~~~~~~~~~ 108 (116)
+......+..++.+++.+++.||.+||+. +..|.+..+++.+
T Consensus 313 ~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~ 361 (489)
T PRK10207 313 SFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFL 361 (489)
T ss_pred HHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 44445556677788888999999999873 5566655554443
No 241
>KOG1237|consensus
Probab=93.40 E-value=2.1 Score=30.72 Aligned_cols=87 Identities=14% Similarity=-0.016 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhc-ccchhHHhhhhHHHH
Q psy17792 26 RKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDR-MGRRTLHLYGLGGMF 104 (116)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr-~grr~~~~~~~~~~~ 104 (116)
|+.....+....+...+.++.......++...++.+...+.-.............+.+++++|- +||=+++..+.++..
T Consensus 36 ~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~ 115 (571)
T KOG1237|consen 36 WLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISL 115 (571)
T ss_pred hHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4444444444445455554455566677777888877655555555566677778889999996 477788888877776
Q ss_pred HHHHHHHH
Q psy17792 105 IFSIFITI 112 (116)
Q Consensus 105 ~~~~~~~~ 112 (116)
.....+..
T Consensus 116 ~G~~~lt~ 123 (571)
T KOG1237|consen 116 LGLFGLTL 123 (571)
T ss_pred HHHHHHHH
Confidence 66555443
No 242
>KOG2533|consensus
Probab=93.38 E-value=1.6 Score=30.67 Aligned_cols=43 Identities=12% Similarity=-0.169 Sum_probs=33.8
Q ss_pred hcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhh
Q psy17792 57 SSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYG 99 (116)
Q Consensus 57 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~ 99 (116)
+.++...+-+....++.++..++.++++.+.||++-.+.+...
T Consensus 75 dl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~ 117 (495)
T KOG2533|consen 75 DLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVS 117 (495)
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHH
Confidence 3455556677888999999999999999999999955554433
No 243
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=93.27 E-value=0.64 Score=31.93 Aligned_cols=63 Identities=13% Similarity=0.163 Sum_probs=35.7
Q ss_pred HHhHHHHHhhcCC---Ccchh----HHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhh-HHHHHHHHHH
Q psy17792 48 FYYSTALFESSGL---SEKTA----KFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGL-GGMFIFSIFI 110 (116)
Q Consensus 48 ~~~~~~~~~~~g~---~~~~~----~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~-~~~~~~~~~~ 110 (116)
.++++|+.+..+. ++.+. +....+..+...+.+++-|.++|+.|+||.....+ .+..++.+.+
T Consensus 36 ~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L 106 (438)
T COG2270 36 FIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLL 106 (438)
T ss_pred ehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHH
Confidence 3455555554433 44322 23344555666777778899999999887665443 4444444333
No 244
>KOG3764|consensus
Probab=93.24 E-value=0.058 Score=36.68 Aligned_cols=42 Identities=10% Similarity=-0.054 Sum_probs=30.6
Q ss_pred HHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhH
Q psy17792 54 LFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTL 95 (116)
Q Consensus 54 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~ 95 (116)
..+++..+.-+.+.......+...+++.+.|.++||++.-++
T Consensus 297 m~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~w 338 (464)
T KOG3764|consen 297 MLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRW 338 (464)
T ss_pred HHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhH
Confidence 455666444466666666778889999999999999994333
No 245
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.14 E-value=0.72 Score=25.40 Aligned_cols=31 Identities=13% Similarity=-0.092 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhhhcc-cchhHHhhhhHHHH
Q psy17792 74 AVMVTMTIISIPLMDRM-GRRTLHLYGLGGMF 104 (116)
Q Consensus 74 ~~~~~~~~~~~~l~dr~-grr~~~~~~~~~~~ 104 (116)
+.+.+.....||+.||+ |-+++.++.+++..
T Consensus 53 IsGilVGa~iG~llD~~agTsPwglIv~lllG 84 (116)
T COG5336 53 ISGILVGAGIGWLLDKFAGTSPWGLIVFLLLG 84 (116)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 34555556678888886 66666655544433
No 246
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=92.13 E-value=3 Score=29.36 Aligned_cols=37 Identities=24% Similarity=0.264 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHH
Q psy17792 68 TTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMF 104 (116)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~ 104 (116)
.....++...+..++++.+.+|+|.+......-+...
T Consensus 324 ~~~~tGivtii~~~l~~~iir~~GW~~~AlitPiv~l 360 (491)
T PF03219_consen 324 FSSWTGIVTIIMMFLSSNIIRRFGWRTAALITPIVIL 360 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHH
Confidence 3445566667777888999999999887766544333
No 247
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=91.38 E-value=1.2 Score=28.73 Aligned_cols=16 Identities=25% Similarity=0.158 Sum_probs=11.3
Q ss_pred ccchhhhhhccccchH
Q psy17792 12 SKISMSELLCSSTLRK 27 (116)
Q Consensus 12 ~~~~~~~~~~~~~~~~ 27 (116)
++.+..+.+|++..|+
T Consensus 83 ~~~s~~~~LK~K~tw~ 98 (267)
T PF07672_consen 83 KKPSYKSILKEKETWK 98 (267)
T ss_pred ccchHHHHHccchHHH
Confidence 4467788888876664
No 248
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=91.20 E-value=0.46 Score=32.55 Aligned_cols=48 Identities=6% Similarity=-0.110 Sum_probs=34.2
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHH
Q psy17792 59 GLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIF 106 (116)
Q Consensus 59 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~ 106 (116)
|+++...+....+.+++.++|..+......+...|+++..+.+..++.
T Consensus 251 ~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~ 298 (433)
T PF03092_consen 251 HFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLA 298 (433)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 366666666777777888888888877777778888877766555443
No 249
>PTZ00207 hypothetical protein; Provisional
Probab=90.18 E-value=2.5 Score=30.52 Aligned_cols=68 Identities=9% Similarity=0.052 Sum_probs=40.2
Q ss_pred hhhhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhc-CCCcch--hHHHHHHHHHHHHHHHHHHHHhh
Q psy17792 15 SMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFESS-GLSEKT--AKFTTIGIGAVMVTMTIISIPLM 87 (116)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~--~~~~~~~~~~~~~~~~~~~~~l~ 87 (116)
++++.+++.++| +.+..+++..........-..++.+.+ |.+.+. ...+..+.+++..+|-+.+|+++
T Consensus 345 t~~q~l~~~d~W-----ll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~ 415 (591)
T PTZ00207 345 TFIEGLKTARLW-----CLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFE 415 (591)
T ss_pred hHHHHHhchhHH-----HHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHH
Confidence 444544443333 344444444444445556667888888 763322 22266777888888888888777
No 250
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=90.12 E-value=1.6 Score=30.01 Aligned_cols=59 Identities=14% Similarity=0.022 Sum_probs=36.1
Q ss_pred HHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhccc-----chhHHhhhhHHHHHHHHHH
Q psy17792 51 STALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMG-----RRTLHLYGLGGMFIFSIFI 110 (116)
Q Consensus 51 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~g-----rr~~~~~~~~~~~~~~~~~ 110 (116)
.|++.+++|+++.+...+.....+ -...-++.|.++|-+- ||+-++.+.++..++...+
T Consensus 13 ~~~l~~~l~ls~~~~~~~~~~~~l-Pw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~ 76 (433)
T PF03092_consen 13 YPFLKDDLGLSPAQLQRLSSLASL-PWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVL 76 (433)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhC-chHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHH
Confidence 356677899998776555444433 2445578899999873 4444455666554444433
No 251
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=90.12 E-value=5.1 Score=28.34 Aligned_cols=41 Identities=22% Similarity=0.271 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHHHHc
Q psy17792 75 VMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITISLL 115 (116)
Q Consensus 75 ~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~ 115 (116)
.+++..++..++.++..|++++-.....+..+.++++...+
T Consensus 74 ~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~ 114 (509)
T COG3202 74 SAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIY 114 (509)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777788899999999999998877777777777776654
No 252
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=90.00 E-value=5.2 Score=28.24 Aligned_cols=41 Identities=22% Similarity=0.282 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHHHHc
Q psy17792 75 VMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITISLL 115 (116)
Q Consensus 75 ~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~ 115 (116)
..++...+..+++|+++|.+++-............+++..|
T Consensus 71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vly 111 (491)
T PF03219_consen 71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLY 111 (491)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555667789999999999998877777777777776654
No 253
>KOG1330|consensus
Probab=88.60 E-value=3.3 Score=29.07 Aligned_cols=34 Identities=9% Similarity=-0.058 Sum_probs=28.3
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy17792 58 SGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMG 91 (116)
Q Consensus 58 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~g 91 (116)
.|.+..+..+...+...++.+|.+++|.++||+.
T Consensus 278 ~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~ 311 (493)
T KOG1330|consen 278 IGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLS 311 (493)
T ss_pred hCCccccchhhhhHHHhhchhhheehHHHHHHHH
Confidence 4556666778888999999999999999999954
No 254
>TIGR03733 lanti_perm_MutG lantibiotic protection ABC transporter permease subunit, MutG family. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene modeled separate by TIGR03732, while in some species only one subunit is found.
Probab=86.94 E-value=5.8 Score=25.08 Aligned_cols=39 Identities=13% Similarity=0.058 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHH
Q psy17792 69 TIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFS 107 (116)
Q Consensus 69 ~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~ 107 (116)
.....++.+.-.++.-+++.|+|....+..|..+...+.
T Consensus 135 ~~~l~~~sl~~~~l~l~ls~~~g~~~si~ig~~g~l~~~ 173 (248)
T TIGR03733 135 ALLLIIGSLFLYIIHLFVSFAFGMGASIGIGIVGTLMAA 173 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence 333445556666666789999998777667665554433
No 255
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=86.85 E-value=8.8 Score=27.02 Aligned_cols=36 Identities=28% Similarity=0.197 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHH
Q psy17792 68 TTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGM 103 (116)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~ 103 (116)
.....++..++..++.+++.+|+|.+......-+..
T Consensus 308 ~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~ 343 (472)
T TIGR00769 308 FSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVM 343 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344445566666666799999999887766554433
No 256
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=86.30 E-value=8.9 Score=26.53 Aligned_cols=83 Identities=8% Similarity=0.097 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHHHHhhchhhhHHhHHHHHhh-cCCCcchhHHHHHH-HHHHHHHHHHHHHHhhhcccchhHHhhhhHHH
Q psy17792 26 RKPLIIGIVMQLSQQFSGINAVFYYSTALFES-SGLSEKTAKFTTIG-IGAVMVTMTIISIPLMDRMGRRTLHLYGLGGM 103 (116)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~-~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~ 103 (116)
+++..+.+...++.++-. .-.|..|++.+. .|++..+..--... ..=..++..++...+.|.+|.|++++.+.+..
T Consensus 4 ~~~~~llc~~gf~~~frP--sEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~ 81 (412)
T PF01770_consen 4 KKITLLLCLFGFFKEFRP--SEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSY 81 (412)
T ss_pred hHHHHHHHHHHHHHhcCC--CCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 344555454445444332 223455666654 67777654322111 12234556677889999999999999887776
Q ss_pred HHHHHHH
Q psy17792 104 FIFSIFI 110 (116)
Q Consensus 104 ~~~~~~~ 110 (116)
.+...++
T Consensus 82 i~t~~ll 88 (412)
T PF01770_consen 82 IITWLLL 88 (412)
T ss_pred HHHHHHH
Confidence 6555444
No 257
>KOG4830|consensus
Probab=85.78 E-value=1.6 Score=28.59 Aligned_cols=45 Identities=20% Similarity=0.184 Sum_probs=31.2
Q ss_pred HHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHH---------HHhhhcccchhH
Q psy17792 51 STALFESSGLSEKTAKFTTIGIGAVMVTMTIIS---------IPLMDRMGRRTL 95 (116)
Q Consensus 51 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---------~~l~dr~grr~~ 95 (116)
+-.++++.|.++......+....+...+.+++. .+..||+|||+.
T Consensus 40 lllfltqiglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~~~ 93 (412)
T KOG4830|consen 40 LLLFLTQIGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRRMS 93 (412)
T ss_pred HHHHHHHhcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhhhcceee
Confidence 344556778887766666776667766666665 456899999874
No 258
>PF01788 PsbJ: PsbJ; InterPro: IPR002682 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbJ found in PSII. PsbJ is one of the most hydrophobic proteins in the thylakoid membrane, and is located in a gene cluster with PsbE, PsbF and PsbL (PsbEFJL). Both PsbJ and PsbL (IPR003372 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbJ cause the light-harvesting antenna to remain detached from the PSII dimers []. In addition, both PsbJ and PsbL are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_J 3ARC_J 3A0B_J 3KZI_J 2AXT_J 3PRQ_J 4FBY_b 3BZ2_J 1S5L_j 3PRR_J ....
Probab=85.25 E-value=2.3 Score=18.86 Aligned_cols=29 Identities=17% Similarity=0.172 Sum_probs=15.7
Q ss_pred hhcccchhHHhhhhHHHHHHHHHHHHHHc
Q psy17792 87 MDRMGRRTLHLYGLGGMFIFSIFITISLL 115 (116)
Q Consensus 87 ~dr~grr~~~~~~~~~~~~~~~~~~~~~~ 115 (116)
+|.-||-+..+++.+........+++.+|
T Consensus 2 ~~ttGRIPLWlVgtv~G~~vi~lvglFfY 30 (40)
T PF01788_consen 2 ANTTGRIPLWLVGTVAGIAVIGLVGLFFY 30 (40)
T ss_dssp ---TTSS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcccchHHHHHHHHHHHHHHHHhee
Confidence 35567888777776665555555555543
No 259
>KOG2325|consensus
Probab=82.99 E-value=8 Score=27.36 Aligned_cols=81 Identities=15% Similarity=0.175 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHH----HHHHHHHHHHHHHhh-hcccchhHHhhhh
Q psy17792 26 RKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGI----GAVMVTMTIISIPLM-DRMGRRTLHLYGL 100 (116)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~l~-dr~grr~~~~~~~ 100 (116)
+...+.++...+.........-.-+.+......+.+..++-..+... ++......+...+.. -++.+|..+..++
T Consensus 261 ~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~~g~ 340 (488)
T KOG2325|consen 261 WVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRIILLGF 340 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccceeeeehH
Confidence 33444444444444444444344455555555666665544443333 222222223333332 3444555555554
Q ss_pred HHHHHH
Q psy17792 101 GGMFIF 106 (116)
Q Consensus 101 ~~~~~~ 106 (116)
+....+
T Consensus 341 l~~f~~ 346 (488)
T KOG2325|consen 341 LIFFLS 346 (488)
T ss_pred HHHHHh
Confidence 444333
No 260
>KOG3762|consensus
Probab=81.89 E-value=6.3 Score=28.47 Aligned_cols=66 Identities=15% Similarity=0.136 Sum_probs=45.4
Q ss_pred hhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHH
Q psy17792 46 AVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFIT 111 (116)
Q Consensus 46 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~ 111 (116)
.+.+++=--+++.+..+.-.+...+...++-++.-++.+++.+|+|+-+++..++.+.+.=.....
T Consensus 389 lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S 454 (618)
T KOG3762|consen 389 LVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYS 454 (618)
T ss_pred HHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHH
Confidence 344444344566665555555666666777788888899999999999999888776665444433
No 261
>KOG3098|consensus
Probab=81.29 E-value=16 Score=25.70 Aligned_cols=44 Identities=27% Similarity=0.215 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhh---hcccchhHHhhhhHHHHHHHHHH
Q psy17792 67 FTTIGIGAVMVTMTIISIPLM---DRMGRRTLHLYGLGGMFIFSIFI 110 (116)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~l~---dr~grr~~~~~~~~~~~~~~~~~ 110 (116)
..+...+++...+....+.+. +++||++.+..+..+-.+..+++
T Consensus 283 i~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li 329 (461)
T KOG3098|consen 283 IYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLI 329 (461)
T ss_pred HHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHH
Confidence 445555666777777666665 56788888887776665555444
No 262
>TIGR03732 lanti_perm_MutE lantibiotic protection ABC transporter permease subunit, MutE/EpiE family. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene, modeled separately.
Probab=81.20 E-value=11 Score=23.79 Aligned_cols=33 Identities=15% Similarity=-0.100 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHhhhcccchhHHhhhhHHH
Q psy17792 71 GIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGM 103 (116)
Q Consensus 71 ~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~ 103 (116)
...++...-.++.-+++.|+|.-..+..+....
T Consensus 131 ~~~i~sl~~i~l~l~ls~~~g~~~si~ig~~~~ 163 (241)
T TIGR03732 131 LIWLTSLWQIPLCLFLARKFGMFVSILVNLVLG 163 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455667888887555555555433
No 263
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=80.99 E-value=7.1 Score=21.32 Aligned_cols=31 Identities=6% Similarity=-0.185 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhhhcccchhHHhhhhHHHHHH
Q psy17792 76 MVTMTIISIPLMDRMGRRTLHLYGLGGMFIF 106 (116)
Q Consensus 76 ~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~ 106 (116)
.++|..++-|+-++++-++.+...+++.+++
T Consensus 56 il~G~~lG~WLD~~~~t~~~~tl~~lllGv~ 86 (100)
T TIGR02230 56 TLLGVAVGIWLDRHYPSPFSWTLTMLIVGVV 86 (100)
T ss_pred HHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Confidence 4445555556666777655554444444433
No 264
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=80.50 E-value=17 Score=25.52 Aligned_cols=39 Identities=15% Similarity=0.130 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHH
Q psy17792 67 FTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFI 105 (116)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~ 105 (116)
......+++..++.++.|++.|++|.|..+........+
T Consensus 154 ~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i 192 (500)
T PRK09584 154 MYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLI 192 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence 445667888899999999999999999887765544333
No 265
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=79.06 E-value=8.2 Score=20.90 Aligned_cols=38 Identities=16% Similarity=0.022 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHH
Q psy17792 66 KFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGM 103 (116)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~ 103 (116)
........++..++..+.+.+.|..|.+..+.......
T Consensus 90 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (141)
T TIGR00880 90 GLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILA 127 (141)
T ss_pred HHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHH
Confidence 34556667888888889999999999877665544333
No 266
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=78.44 E-value=8.1 Score=20.52 Aligned_cols=40 Identities=15% Similarity=0.235 Sum_probs=21.9
Q ss_pred hhhhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHHhh
Q psy17792 15 SMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFES 57 (116)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (116)
.++++.+. +++..+.+...++....++.....|.|..+..
T Consensus 6 ~f~~L~r~---r~r~~~~l~~i~l~~y~~~~ll~a~~p~~m~~ 45 (91)
T PF04341_consen 6 EFQELVRR---RRRLAWPLSAIFLVLYFGFVLLSAFAPELMAT 45 (91)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHcC
Confidence 35555543 33444444444555555556666777777754
No 267
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=78.03 E-value=16 Score=23.82 Aligned_cols=29 Identities=10% Similarity=-0.059 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccchhHHh
Q psy17792 69 TIGIGAVMVTMTIISIPLMDRMGRRTLHL 97 (116)
Q Consensus 69 ~~~~~~~~~~~~~~~~~l~dr~grr~~~~ 97 (116)
.....+++.+..++.|.++|+.|.+..+.
T Consensus 270 ~~~~~~Gg~i~P~l~G~lad~~g~~~a~~ 298 (310)
T TIGR01272 270 LCLAIVGGAIVPLLQGSLADCLGIQLAFA 298 (310)
T ss_pred HHHHHhcchHHHHHHHHHHHhccchHHHH
Confidence 34555677788888999999999766544
No 268
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=77.20 E-value=10 Score=20.96 Aligned_cols=47 Identities=11% Similarity=0.044 Sum_probs=35.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHH
Q psy17792 63 KTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIF 109 (116)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~ 109 (116)
.+.+-..+.++.+.++.+++.++..|+....+.=..|..++.+...+
T Consensus 54 ~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~i 100 (107)
T PF02694_consen 54 AAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAI 100 (107)
T ss_pred ccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHh
Confidence 44556677788888999999999999988777667766666555443
No 269
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=76.56 E-value=24 Score=25.03 Aligned_cols=42 Identities=7% Similarity=-0.178 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHH
Q psy17792 65 AKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIF 106 (116)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~ 106 (116)
..+.....+++..++..+.+++.++.|.+..+..+.+++.+.
T Consensus 140 f~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~ 181 (493)
T PRK15462 140 FSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAG 181 (493)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHH
Confidence 345556667889999999999999999888776654444333
No 270
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=76.32 E-value=14 Score=25.49 Aligned_cols=52 Identities=13% Similarity=-0.088 Sum_probs=30.4
Q ss_pred HHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhccc-----chhHHhh-hhHHHHHH
Q psy17792 54 LFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMG-----RRTLHLY-GLGGMFIF 106 (116)
Q Consensus 54 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~g-----rr~~~~~-~~~~~~~~ 106 (116)
+..+++++..-......+..+.+ +.-+..|+.||+.+ ||..+++ |.+.+...
T Consensus 6 MIvEL~vpA~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g 63 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGG 63 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHH
Confidence 34556666544443334333333 35677899999998 8876665 44444443
No 271
>PF05232 BTP: Bacterial Transmembrane Pair family; InterPro: IPR007896 This domain represents a conserved pair of transmembrane helices. It appears to be found as two tandem repeats in a family of hypothetical proteins.
Probab=76.30 E-value=8 Score=19.34 Aligned_cols=47 Identities=17% Similarity=0.118 Sum_probs=37.8
Q ss_pred hHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccch
Q psy17792 47 VFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRR 93 (116)
Q Consensus 47 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr 93 (116)
+....|.+.--+|.+..++........+...+-+.+.-+.-||+-+|
T Consensus 18 l~~~~P~~a~~~~~~~~~a~~l~v~~s~~a~~wn~ifN~~FD~~~~r 64 (67)
T PF05232_consen 18 LLISVPLIAWWLGISLWQAGALDVGLSLFAMVWNYIFNWLFDKIEPR 64 (67)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33345655556788888888999999999999999999999998665
No 272
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=75.90 E-value=24 Score=24.64 Aligned_cols=39 Identities=10% Similarity=-0.105 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHH
Q psy17792 65 AKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGM 103 (116)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~ 103 (116)
...++....+..++.+...|...||..|.+....+....
T Consensus 40 ~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Q 78 (432)
T PF06963_consen 40 VSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQ 78 (432)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHH
Confidence 445666677788888889999999999999877765544
No 273
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=75.44 E-value=16 Score=22.27 Aligned_cols=43 Identities=9% Similarity=0.002 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHH
Q psy17792 69 TIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFIT 111 (116)
Q Consensus 69 ~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~ 111 (116)
.....+..+++.++.-.+..|.+||..+....++.++...+.+
T Consensus 34 ~~~~~i~ali~g~vyml~~~KV~K~G~~~i~~~i~gl~~~~~G 76 (186)
T PF09605_consen 34 LFMPAIAALICGIVYMLMVAKVPKRGAFLIMGIIMGLIFFLMG 76 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHh
Confidence 3445667788888888899999999988776666666555444
No 274
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=74.61 E-value=24 Score=24.00 Aligned_cols=60 Identities=15% Similarity=0.031 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhc
Q psy17792 28 PLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDR 89 (116)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr 89 (116)
+++....+..+...+-+..+..|.|.+..+ -.....+.+..-..+..++|+.+..++..+
T Consensus 245 ril~LG~~qslFE~smy~FVflWtPaL~~~--~~~~P~GlIFssFM~a~MlGS~lf~~l~s~ 304 (354)
T PF05631_consen 245 RILLLGLIQSLFEGSMYLFVFLWTPALDPD--DEELPLGLIFSSFMVAMMLGSSLFSRLLSK 304 (354)
T ss_pred hhHHHHHHHHHHHHHHHHheeeeeceecCC--CCCCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344444555555666666667777876621 112234455666677788888888765543
No 275
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=74.41 E-value=4.1 Score=28.97 Aligned_cols=60 Identities=15% Similarity=0.063 Sum_probs=33.0
Q ss_pred hHHHHHhh--cCCCcchhHHHHHH--HHHHHHHHHHHH-HHhhhcccchhHHhh-hhHHHHHHHHH
Q psy17792 50 YSTALFES--SGLSEKTAKFTTIG--IGAVMVTMTIIS-IPLMDRMGRRTLHLY-GLGGMFIFSIF 109 (116)
Q Consensus 50 ~~~~~~~~--~g~~~~~~~~~~~~--~~~~~~~~~~~~-~~l~dr~grr~~~~~-~~~~~~~~~~~ 109 (116)
-.|.++++ -+.+-++....+.. ..-.-++.+++. ...+.|+||||..++ .-.+.++.++.
T Consensus 22 siPflL~~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g~~m~~ 87 (544)
T PF13000_consen 22 SIPFLLQSMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIPIQYLSGILMLY 87 (544)
T ss_pred cchhhhccccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhhHHHHHHHHHHHH
Confidence 45777776 45555444332222 223345555543 567889999987654 33444444433
No 276
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=73.52 E-value=16 Score=21.45 Aligned_cols=38 Identities=13% Similarity=0.037 Sum_probs=23.0
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHH
Q psy17792 59 GLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLH 96 (116)
Q Consensus 59 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~ 96 (116)
|+++........+.++.-.++.+++.+++|+.++-..+
T Consensus 68 Gi~EkslL~sA~LvYi~PL~~l~v~~~La~~L~~~e~~ 105 (150)
T COG3086 68 GIEEKSLLKSALLVYIFPLVGLFLGAILAQYLFFSELI 105 (150)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 55555555555556666666666666667776665544
No 277
>PRK02237 hypothetical protein; Provisional
Probab=73.25 E-value=14 Score=20.54 Aligned_cols=47 Identities=13% Similarity=0.076 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHH
Q psy17792 64 TAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFI 110 (116)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~ 110 (116)
+.+-....++.+.++.+++.++..|+...-+.=..|..++.+...++
T Consensus 57 ~~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI 103 (109)
T PRK02237 57 AFGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVI 103 (109)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHh
Confidence 35566777888889999999999999877666666666665554433
No 278
>TIGR00267 conserved hypothetical protein TIGR00267. This family is represented in three of the first four completed archaeal genomes, with two members in A. fulgidus.
Probab=73.05 E-value=17 Score=21.72 Aligned_cols=30 Identities=10% Similarity=0.158 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHhhhcccchhHHhhhhH
Q psy17792 72 IGAVMVTMTIISIPLMDRMGRRTLHLYGLG 101 (116)
Q Consensus 72 ~~~~~~~~~~~~~~l~dr~grr~~~~~~~~ 101 (116)
..+...+.-.+.|+..-|++.+++...+.=
T Consensus 122 s~~~~~~~L~ilG~~~a~~s~~~~~~s~lr 151 (169)
T TIGR00267 122 TVLLTLIALLVLGVYLGRISRENILISSLK 151 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 344455555566777777776666554443
No 279
>KOG3098|consensus
Probab=72.31 E-value=32 Score=24.36 Aligned_cols=67 Identities=12% Similarity=0.178 Sum_probs=44.5
Q ss_pred hhchhhhHHhHHHHHhhcC------CCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHH
Q psy17792 41 FSGINAVFYYSTALFESSG------LSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFS 107 (116)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~ 107 (116)
+.++....+-...+.+..+ .++..-....++......+.+++.+.+.|++|.|..++.+.......-
T Consensus 22 f~~~~s~~fi~esvi~sv~~~~~g~i~~~aGy~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~ 94 (461)
T KOG3098|consen 22 FTAYDSQGFIAESVIHSVHERGPGGISAYAGYYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFP 94 (461)
T ss_pred hHhhhhhHHHHHHHHHHHHhcCCCCcCCCccHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHH
Confidence 3344444444555554432 222233344677788889999999999999999999998877665543
No 280
>KOG1278|consensus
Probab=71.50 E-value=1.7 Score=31.02 Aligned_cols=9 Identities=0% Similarity=0.087 Sum_probs=6.5
Q ss_pred hhhhccccc
Q psy17792 17 SELLCSSTL 25 (116)
Q Consensus 17 ~~~~~~~~~ 25 (116)
.|+||.|+.
T Consensus 318 GDVFR~P~~ 326 (628)
T KOG1278|consen 318 GDVFRPPRN 326 (628)
T ss_pred cccccCCCC
Confidence 478988744
No 281
>COG1268 BioY Uncharacterized conserved protein [General function prediction only]
Probab=70.73 E-value=22 Score=21.79 Aligned_cols=23 Identities=9% Similarity=0.075 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcccc
Q psy17792 70 IGIGAVMVTMTIISIPLMDRMGR 92 (116)
Q Consensus 70 ~~~~~~~~~~~~~~~~l~dr~gr 92 (116)
..+-++..+++.+.|++.||..+
T Consensus 89 gGyL~gfi~aa~l~G~l~~k~~~ 111 (184)
T COG1268 89 GGYLIGFIIAAFLIGLLAEKIRK 111 (184)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhc
Confidence 34456678888899999999986
No 282
>PF04226 Transgly_assoc: Transglycosylase associated protein; InterPro: IPR007341 This bacterial protein is predicted to be an integral membrane protein. Some family members have been annotated as transglycosylase-associated proteins, but no experimental evidence is provided. This family was annotated based on the information in P76011 from SWISSPROT.; GO: 0016021 integral to membrane
Probab=69.85 E-value=10 Score=17.60 Aligned_cols=17 Identities=12% Similarity=0.034 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhhhcccc
Q psy17792 76 MVTMTIISIPLMDRMGR 92 (116)
Q Consensus 76 ~~~~~~~~~~l~dr~gr 92 (116)
+.+|+++++++.+.+|.
T Consensus 4 GiiGa~vGg~l~~~lg~ 20 (48)
T PF04226_consen 4 GIIGAFVGGWLFGLLGI 20 (48)
T ss_pred ehHHHHHHHHHHHHhcc
Confidence 45666677777666665
No 283
>KOG2816|consensus
Probab=68.23 E-value=9.4 Score=26.79 Aligned_cols=57 Identities=14% Similarity=0.177 Sum_probs=43.8
Q ss_pred hcCCCcchhHHHHHHHHHHHHHHHHHHH-HhhhcccchhHHhhhhHHHHHHHHHHHHH
Q psy17792 57 SSGLSEKTAKFTTIGIGAVMVTMTIISI-PLMDRMGRRTLHLYGLGGMFIFSIFITIS 113 (116)
Q Consensus 57 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~l~dr~grr~~~~~~~~~~~~~~~~~~~~ 113 (116)
.++.+..+...+.........++.++.. .+...+|.|+....|...........+++
T Consensus 271 ~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~ 328 (463)
T KOG2816|consen 271 KFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFA 328 (463)
T ss_pred ecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHh
Confidence 4788888888788888888888888765 88889999997777877666666555554
No 284
>KOG3097|consensus
Probab=67.50 E-value=37 Score=23.24 Aligned_cols=66 Identities=8% Similarity=0.037 Sum_probs=36.7
Q ss_pred HHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHH
Q psy17792 33 IVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMF 104 (116)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~ 104 (116)
....+..++..+.........+-.++|-.. .....+.-...+++.+.+.+++|-|.++..+.....
T Consensus 34 ~s~~fl~~f~a~~gl~nlq~~vn~~lg~~s------l~~~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~ 99 (390)
T KOG3097|consen 34 LSIAFLLTFTAYLGLQNLQTSVNYDLGTVS------LGALYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYA 99 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccch------hhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344455555555555544443333222211 222334455566667799999999998877655543
No 285
>PF02632 BioY: BioY family; InterPro: IPR003784 BioMNY proteins are considered to constitute tripartite biotin transporters in prokaryotes. One-third of the widespread bioY genes are linked to bioMN. Many bioY genes are located at loci encoding biotin biosynthesis, while others are unlinked to biotin metabolic or transport genes. BioY is a high-capacity transporter that is converted to a high-affinity system in the presence of BioMN. BioMNY-mediated biotin uptake is severely impaired by the replacement of the Walker A lysine residue in BioM, demonstrating the dependency of high-affinity transport on a functional ATPase [].
Probab=67.41 E-value=23 Score=20.78 Aligned_cols=23 Identities=22% Similarity=0.154 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHhhhcccch
Q psy17792 71 GIGAVMVTMTIISIPLMDRMGRR 93 (116)
Q Consensus 71 ~~~~~~~~~~~~~~~l~dr~grr 93 (116)
.+-++..+.+.+.|++.+|..++
T Consensus 61 Gyl~gf~~~a~i~g~~~~~~~~~ 83 (148)
T PF02632_consen 61 GYLLGFPLAALIIGLLAERLKRS 83 (148)
T ss_pred hHHHHHHHHHHHHHHHHHhcccc
Confidence 34456677788889999998875
No 286
>PF13493 DUF4118: Domain of unknown function (DUF4118); PDB: 2KSF_A.
Probab=65.76 E-value=12 Score=20.04 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccch
Q psy17792 69 TIGIGAVMVTMTIISIPLMDRMGRR 93 (116)
Q Consensus 69 ~~~~~~~~~~~~~~~~~l~dr~grr 93 (116)
....-+..++.+++.|.+.||..||
T Consensus 81 ~~~~~~~~l~va~v~g~l~~~~r~~ 105 (105)
T PF13493_consen 81 DWITFAVFLVVALVTGYLADRYRRQ 105 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3445566777888999999999876
No 287
>KOG0637|consensus
Probab=64.43 E-value=50 Score=23.62 Aligned_cols=34 Identities=15% Similarity=0.148 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhH
Q psy17792 68 TTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLG 101 (116)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~ 101 (116)
-..+..+...+.+...-++.||+|-|+.++.+..
T Consensus 337 GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~ 370 (498)
T KOG0637|consen 337 GLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVN 370 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhH
Confidence 3455567777888888999999995555554443
No 288
>COG4139 BtuC ABC-type cobalamin transport system, permease component [Coenzyme metabolism]
Probab=64.33 E-value=30 Score=22.17 Aligned_cols=45 Identities=24% Similarity=0.373 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHhhhcccchhHH-----hhhhHHHHHHHHHHHHHHcC
Q psy17792 72 IGAVMVTMTIISIPLMDRMGRRTLH-----LYGLGGMFIFSIFITISLLI 116 (116)
Q Consensus 72 ~~~~~~~~~~~~~~l~dr~grr~~~-----~~~~~~~~~~~~~~~~~~~~ 116 (116)
.....++|+++...+.-++-||... ..|.....++...++.++||
T Consensus 117 ~~~~Ai~GALl~TliLl~~aRr~~lTarLLLvGVALGIi~~A~mTWA~YF 166 (326)
T COG4139 117 LGLCAIAGALIITLILLRFARRHLSTSRLLLAGVALGIICSALMTWAIYF 166 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhee
Confidence 3456677888887777778777644 44555666677777777765
No 289
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=64.28 E-value=30 Score=20.99 Aligned_cols=17 Identities=12% Similarity=0.305 Sum_probs=9.7
Q ss_pred cchhhhhhccccchHHH
Q psy17792 13 KISMSELLCSSTLRKPL 29 (116)
Q Consensus 13 ~~~~~~~~~~~~~~~~~ 29 (116)
..+|.+.|+-++-+++.
T Consensus 24 ~L~W~~ffkLRk~rrr~ 40 (173)
T PF08566_consen 24 QLTWNEFFKLRKSRRRI 40 (173)
T ss_pred CCCHHHHHHHHHHhhHH
Confidence 45677777655444433
No 290
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=62.71 E-value=8 Score=26.39 Aligned_cols=27 Identities=15% Similarity=0.218 Sum_probs=21.1
Q ss_pred HHhhhcccchhHHhhhhHHHHHHHHHH
Q psy17792 84 IPLMDRMGRRTLHLYGLGGMFIFSIFI 110 (116)
Q Consensus 84 ~~l~dr~grr~~~~~~~~~~~~~~~~~ 110 (116)
+++..|+.||+.+++|++++.+.+..+
T Consensus 78 pF~~~r~~~R~~~~~G~~~f~~~l~~l 104 (385)
T PF06898_consen 78 PFFLKRLRRRKGFVAGIVLFLALLYIL 104 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778889999998888887776655
No 291
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=62.13 E-value=52 Score=23.05 Aligned_cols=37 Identities=8% Similarity=0.037 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHH
Q psy17792 66 KFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGG 102 (116)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~ 102 (116)
.+.....+++..++.++.+++.|..|.+..+......
T Consensus 144 ~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~ 180 (475)
T TIGR00924 144 TLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVG 180 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 4556677889999999999999999988777654433
No 292
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=60.53 E-value=37 Score=20.77 Aligned_cols=37 Identities=11% Similarity=0.047 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHH
Q psy17792 70 IGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIF 106 (116)
Q Consensus 70 ~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~ 106 (116)
....+..+++.++.-.+..|.+|+.++....++.++.
T Consensus 37 ~~p~i~al~~g~vyml~~~KV~K~G~~~i~~~i~gl~ 73 (189)
T TIGR02185 37 FSPGITAFLVGIIFFLMVAKVPKRGVIFIFGILLGLL 73 (189)
T ss_pred HHHHHHHHHHhHHHhhhhhhcCCccHHHHHHHHHHHH
Confidence 4456667777888888899999998776655554443
No 293
>PF11283 DUF3084: Protein of unknown function (DUF3084); InterPro: IPR021435 This bacterial family of proteins has no known function.
Probab=60.41 E-value=21 Score=18.56 Aligned_cols=21 Identities=14% Similarity=0.452 Sum_probs=11.7
Q ss_pred HHHHHHHHhhhcccchhHHhh
Q psy17792 78 TMTIISIPLMDRMGRRTLHLY 98 (116)
Q Consensus 78 ~~~~~~~~l~dr~grr~~~~~ 98 (116)
+-+.++..+..|+|||++-+.
T Consensus 15 ~IA~~GD~iG~kvGKkrlslF 35 (79)
T PF11283_consen 15 LIAYLGDRIGSKVGKKRLSLF 35 (79)
T ss_pred HHHHHHHHHHHHHhHHHhhhh
Confidence 333445556666777765444
No 294
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=60.27 E-value=9.7 Score=26.01 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=20.8
Q ss_pred HHhhhcccchhHHhhhhHHHHHHHHHH
Q psy17792 84 IPLMDRMGRRTLHLYGLGGMFIFSIFI 110 (116)
Q Consensus 84 ~~l~dr~grr~~~~~~~~~~~~~~~~~ 110 (116)
+++..|+-||+.++.|++++.+.+..+
T Consensus 75 pF~~~r~~kRk~~~~G~~~f~~ll~~l 101 (382)
T TIGR02876 75 PFLFKRLRKRPGILIGILLFLAIVYFL 101 (382)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778889999988888877766554
No 295
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=60.02 E-value=37 Score=20.68 Aligned_cols=28 Identities=11% Similarity=0.117 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchh
Q psy17792 67 FTTIGIGAVMVTMTIISIPLMDRMGRRT 94 (116)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~l~dr~grr~ 94 (116)
+......+..++++++++++..|+=||.
T Consensus 156 ~~~~~~~~~~~v~a~lG~~lG~kllkKH 183 (186)
T PF09605_consen 156 WMLIIIIIITFVGALLGALLGKKLLKKH 183 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445667777777777777776664
No 296
>KOG4686|consensus
Probab=59.48 E-value=1.3 Score=29.47 Aligned_cols=38 Identities=18% Similarity=0.104 Sum_probs=26.1
Q ss_pred hcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhc-ccchh
Q psy17792 57 SSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDR-MGRRT 94 (116)
Q Consensus 57 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr-~grr~ 94 (116)
+.+++..+..+.....+--.++.++++|++.|| +|-|.
T Consensus 73 d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~ 111 (459)
T KOG4686|consen 73 DSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRL 111 (459)
T ss_pred ccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhH
Confidence 345555555566666667778888999999996 45554
No 297
>PF05814 DUF843: Baculovirus protein of unknown function (DUF843); InterPro: IPR008561 This family consists of several unidentified baculovirus proteins of around 85 residues long with no known function.
Probab=59.00 E-value=25 Score=18.46 Aligned_cols=38 Identities=13% Similarity=0.032 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhhhcccchhHHhh-hhHHHHHHHHHHHHH
Q psy17792 76 MVTMTIISIPLMDRMGRRTLHLY-GLGGMFIFSIFITIS 113 (116)
Q Consensus 76 ~~~~~~~~~~l~dr~grr~~~~~-~~~~~~~~~~~~~~~ 113 (116)
.+++-++.|++.||.-+-.-+++ -.++..++.+++-+.
T Consensus 6 ~~~~Li~~~fi~~k~~~~s~li~~~LilfviF~~~L~~y 44 (83)
T PF05814_consen 6 LFLALIVLGFIFDKNEGFSELIITLLILFVIFFCVLQVY 44 (83)
T ss_pred HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 45556678999999854444444 444455555444443
No 298
>PF07698 7TM-7TMR_HD: 7TM receptor with intracellular HD hydrolase; InterPro: IPR011621 These bacterial 7TM receptor proteins have an intracellular domain IPR006674 from INTERPRO. This entry corresponds to the 7 helix transmembrane domain. These proteins also contain an N-terminal extracellular domain.
Probab=57.44 E-value=40 Score=20.32 Aligned_cols=27 Identities=15% Similarity=0.076 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhhhcccchhHHhhhh
Q psy17792 74 AVMVTMTIISIPLMDRMGRRTLHLYGL 100 (116)
Q Consensus 74 ~~~~~~~~~~~~l~dr~grr~~~~~~~ 100 (116)
+...+++..+.+..+|..+|.-++.+.
T Consensus 108 ~~~l~~~~~~~~~~~~~~~R~~~i~ag 134 (194)
T PF07698_consen 108 LYSLVSGIVAIFSVRRIRSRSDIIKAG 134 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445778888888999999887665443
No 299
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=55.96 E-value=30 Score=20.52 Aligned_cols=12 Identities=17% Similarity=-0.177 Sum_probs=6.9
Q ss_pred HHHHHhhhcccc
Q psy17792 81 IISIPLMDRMGR 92 (116)
Q Consensus 81 ~~~~~l~dr~gr 92 (116)
+-.|.++-.+..
T Consensus 114 isYGilSaSWD~ 125 (153)
T PF11947_consen 114 ISYGILSASWDP 125 (153)
T ss_pred hhhhhcccccCC
Confidence 444667666653
No 300
>KOG2615|consensus
Probab=55.71 E-value=70 Score=22.52 Aligned_cols=36 Identities=17% Similarity=0.271 Sum_probs=21.1
Q ss_pred hhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy17792 56 ESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMG 91 (116)
Q Consensus 56 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~g 91 (116)
..+|+++.+.+-.....++.+.+.........||..
T Consensus 290 ~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~ 325 (451)
T KOG2615|consen 290 GRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYK 325 (451)
T ss_pred CccCCChhhheeeeehhhHHHHHHHHhccccccccc
Confidence 457888877665555555555555444444555444
No 301
>PRK14209 camphor resistance protein CrcB; Provisional
Probab=55.21 E-value=27 Score=19.82 Aligned_cols=16 Identities=13% Similarity=0.040 Sum_probs=6.0
Q ss_pred HHHHHHHHHhhhcccc
Q psy17792 77 VTMTIISIPLMDRMGR 92 (116)
Q Consensus 77 ~~~~~~~~~l~dr~gr 92 (116)
.+..+++.++..+.+|
T Consensus 105 ~~~gl~a~~lG~~l~~ 120 (124)
T PRK14209 105 VGLSLAGLMAGMAAVR 120 (124)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 302
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=54.26 E-value=22 Score=16.62 Aligned_cols=13 Identities=38% Similarity=0.641 Sum_probs=5.4
Q ss_pred hcccchhHHhhhh
Q psy17792 88 DRMGRRTLHLYGL 100 (116)
Q Consensus 88 dr~grr~~~~~~~ 100 (116)
+|+-|.|.-++|.
T Consensus 10 ~~f~~nk~a~~gl 22 (56)
T PF12911_consen 10 RRFRRNKLAVIGL 22 (56)
T ss_pred HHHHhCchHHHHH
Confidence 3344444444443
No 303
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=53.32 E-value=78 Score=22.37 Aligned_cols=72 Identities=15% Similarity=0.146 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHH--------HhhhcccchhHHhhhhHH
Q psy17792 31 IGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISI--------PLMDRMGRRTLHLYGLGG 102 (116)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--------~l~dr~grr~~~~~~~~~ 102 (116)
+......|..+.| ..+..++|++=++.|-+-..+..-..+.+++-.+..+++. -+.+|.||+.-.+...++
T Consensus 11 l~iG~~LFamFFG-AGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgiiava~~~g~~~~l~~rv~~~f~~~f~~~i 89 (439)
T PRK15433 11 IALGFMTFALFVG-AGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALAKVGGGVDSLSTPIGKVAGVLLATVC 89 (439)
T ss_pred HHHHHHHHHHHhc-CcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHhhhcchHHHHHHHHHH
Confidence 3345555555555 3455677776555444332222222222332222222221 245577777665554443
Q ss_pred H
Q psy17792 103 M 103 (116)
Q Consensus 103 ~ 103 (116)
.
T Consensus 90 ~ 90 (439)
T PRK15433 90 Y 90 (439)
T ss_pred H
Confidence 3
No 304
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=52.09 E-value=40 Score=18.67 Aligned_cols=28 Identities=11% Similarity=-0.037 Sum_probs=12.9
Q ss_pred HHHHHHhhhcccchhHHhhhhHHHHHHH
Q psy17792 80 TIISIPLMDRMGRRTLHLYGLGGMFIFS 107 (116)
Q Consensus 80 ~~~~~~l~dr~grr~~~~~~~~~~~~~~ 107 (116)
.-..-..+|.+.|+...+...+...++.
T Consensus 17 ~~~~lK~s~gf~~~~~~il~~v~~~~sf 44 (106)
T COG2076 17 GTTLLKYSDGFTRLWPSILTIVGYGLSF 44 (106)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 3334455555555554444444433333
No 305
>KOG4516|consensus
Probab=51.87 E-value=41 Score=18.66 Aligned_cols=15 Identities=13% Similarity=0.053 Sum_probs=7.0
Q ss_pred HHHhhhcccchhHHh
Q psy17792 83 SIPLMDRMGRRTLHL 97 (116)
Q Consensus 83 ~~~l~dr~grr~~~~ 97 (116)
++.+.+++.||+...
T Consensus 40 s~~~~N~~~rkP~~~ 54 (118)
T KOG4516|consen 40 SAIFINWGFRKPVFS 54 (118)
T ss_pred HHHHHhhhhcCchHH
Confidence 344445554554443
No 306
>PF13937 DUF4212: Domain of unknown function (DUF4212)
Probab=49.29 E-value=39 Score=17.69 Aligned_cols=27 Identities=15% Similarity=0.257 Sum_probs=14.8
Q ss_pred HHHHHHHHHH-HHHHHHHHHhhhcccch
Q psy17792 67 FTTIGIGAVM-VTMTIISIPLMDRMGRR 93 (116)
Q Consensus 67 ~~~~~~~~~~-~~~~~~~~~l~dr~grr 93 (116)
+...-.++.. ++-...-.+..||+.||
T Consensus 49 w~aaQGsi~~fviLi~~Ya~~mnrlD~~ 76 (81)
T PF13937_consen 49 WFAAQGSIIVFVILIFVYAWRMNRLDRK 76 (81)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344333333 33344457888888776
No 307
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=49.11 E-value=30 Score=19.12 Aligned_cols=42 Identities=10% Similarity=0.031 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHH
Q psy17792 65 AKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIF 106 (116)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~ 106 (116)
.+-.....+-+.++.++..++.+|+...-+.=..|..++.+.
T Consensus 57 ~GRvYAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G 98 (109)
T COG1742 57 FGRVYAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAG 98 (109)
T ss_pred hhhHHHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhc
Confidence 444556677778889999999999887666556665555443
No 308
>PF00528 BPD_transp_1: Binding-protein-dependent transport system inner membrane component; InterPro: IPR000515 Bacterial binding protein-dependent transport systems [, ] are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system. The integral inner-membrane proteins translocate the substrate across the membrane. It has been shown [, ] that most of these proteins contain a conserved region located about 80 to 100 residues from their C-terminal extremity. This region seems [] to be located in a cytoplasmic loop between two transmembrane domains. Apart from the conserved region, the sequence of these proteins is quite divergent, and they have a variable number of transmembrane helices, however they can be classified into seven families which have been respectively termed: araH, cysTW, fecCD, hisMQ, livHM, malFG and oppBC.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2ONK_H 3PUX_G 3PUY_G 2R6G_G 3PV0_G 3RLF_G 3PUW_G 3PUV_G 3PUZ_G 3TUI_E ....
Probab=49.10 E-value=52 Score=19.10 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHhhhcccch
Q psy17792 73 GAVMVTMTIISIPLMDRMGRR 93 (116)
Q Consensus 73 ~~~~~~~~~~~~~l~dr~grr 93 (116)
.+...+...+.-.+.+++.||
T Consensus 162 ~~~~~~~~~i~~~l~~~~~~r 182 (185)
T PF00528_consen 162 ALIIILLNLILNILQRLLERR 182 (185)
T ss_dssp HHHHHHHHHHHHHHHHCT-S-
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 344444455555666666655
No 309
>PRK11469 hypothetical protein; Provisional
Probab=48.65 E-value=62 Score=19.82 Aligned_cols=32 Identities=16% Similarity=-0.013 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhhhcccchhHHhhhhHHHHHHH
Q psy17792 76 MVTMTIISIPLMDRMGRRTLHLYGLGGMFIFS 107 (116)
Q Consensus 76 ~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~ 107 (116)
...|..++.++.+++|||.-++.|.++..+..
T Consensus 148 ~~~G~~lG~~~g~~~g~~a~~lgG~iLI~iGi 179 (188)
T PRK11469 148 STLGMMVGRFIGSIIGKKAEILGGLVLIGIGV 179 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444556667777766666666555543
No 310
>PRK01636 ccrB camphor resistance protein CrcB; Provisional
Probab=48.38 E-value=33 Score=19.28 Aligned_cols=22 Identities=5% Similarity=-0.050 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHhhhcccchhH
Q psy17792 74 AVMVTMTIISIPLMDRMGRRTL 95 (116)
Q Consensus 74 ~~~~~~~~~~~~l~dr~grr~~ 95 (116)
+.+++...++-++.+++.||-.
T Consensus 92 ~~gl~a~~lG~~l~~~~~~~~~ 113 (118)
T PRK01636 92 IVGYIAVELGLMIGKKEKPKDP 113 (118)
T ss_pred HHHHHHHHHHHHHHHHHhccCc
Confidence 3334444444456666666644
No 311
>KOG2601|consensus
Probab=47.25 E-value=1e+02 Score=21.85 Aligned_cols=39 Identities=13% Similarity=-0.109 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHH
Q psy17792 66 KFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMF 104 (116)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~ 104 (116)
......-+....+...+.|--.|+..|+|++-......-
T Consensus 66 Avyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqN 104 (503)
T KOG2601|consen 66 AVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQN 104 (503)
T ss_pred HHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhcc
Confidence 344555555666677777888899999998866555433
No 312
>COG1380 Putative effector of murein hydrolase LrgA [General function prediction only]
Probab=46.18 E-value=23 Score=20.33 Aligned_cols=30 Identities=7% Similarity=-0.088 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhcccch
Q psy17792 64 TAKFTTIGIGAVMVTMTIISIPLMDRMGRR 93 (116)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~l~dr~grr 93 (116)
+.........+..++.....|+.+|+.-|+
T Consensus 88 ~~~~Il~~~iiST~lv~~vtg~~~~~l~~~ 117 (128)
T COG1380 88 DGLPILVVIIISTLLVLLVTGWVVQLLIRW 117 (128)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445566677777778888876444
No 313
>COG2119 Predicted membrane protein [Function unknown]
Probab=45.82 E-value=71 Score=19.72 Aligned_cols=35 Identities=14% Similarity=0.173 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHH
Q psy17792 73 GAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFS 107 (116)
Q Consensus 73 ~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~ 107 (116)
.++..++...+.++++|+..|.+...+.+++.+..
T Consensus 144 ~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~fa 178 (190)
T COG2119 144 ILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFA 178 (190)
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 45566677778899999999998887766655544
No 314
>COG3162 Predicted membrane protein [Function unknown]
Probab=45.40 E-value=52 Score=18.02 Aligned_cols=43 Identities=7% Similarity=0.213 Sum_probs=19.8
Q ss_pred cccchhhhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHHh
Q psy17792 11 ESKISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFE 56 (116)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (116)
+.+..++|+.+.+ ++..+.+.+.++.-..++..+.-|.|..+.
T Consensus 10 ~a~p~f~eLv~kr---~~Fa~~ltl~flv~Y~~filLiaf~~~~l~ 52 (102)
T COG3162 10 AANPRFRELVRKR---RRFAVPLTLIFLVVYFGFILLIAFAPGWLA 52 (102)
T ss_pred ccCHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhHHHhc
Confidence 3455677876543 333333333333333333444445554443
No 315
>KOG3500|consensus
Probab=44.70 E-value=48 Score=17.40 Aligned_cols=40 Identities=10% Similarity=-0.130 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHH
Q psy17792 71 GIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFI 110 (116)
Q Consensus 71 ~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~ 110 (116)
...+...+.++...++..|--.|.++....++.++++.++
T Consensus 9 ~ftvfw~~v~~~~pi~~~kgP~~~li~~~lvlTAVCCwlf 48 (84)
T KOG3500|consen 9 VFTVFWGIVGICGPICFPKGPNRGLIRCMLVLTAVCCWLF 48 (84)
T ss_pred HHHHHHHHHHHhcceeccCCCCcChhHHHHHHHHHHHHHH
Confidence 3455566666777778888877777776666666655443
No 316
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=44.27 E-value=1.2e+02 Score=21.96 Aligned_cols=60 Identities=13% Similarity=0.036 Sum_probs=35.3
Q ss_pred HHHHHHHHhhchhhhHHhHHHHHhhcCCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy17792 33 IVMQLSQQFSGINAVFYYSTALFESSGLSEK-TAKFTTIGIGAVMVTMTIISIPLMDRMGR 92 (116)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~l~dr~gr 92 (116)
..+++....++++-+.+|.-.+-++..-+.. -.+..-++..+.+.+.++..|++-.++.|
T Consensus 267 WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~ 327 (511)
T TIGR00806 267 WSLWWVFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWAR 327 (511)
T ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchh
Confidence 4455666677777777776666666533211 22334445556667777788887555543
No 317
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.73 E-value=60 Score=18.73 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHhhhcccchh
Q psy17792 72 IGAVMVTMTIISIPLMDRMGRRT 94 (116)
Q Consensus 72 ~~~~~~~~~~~~~~l~dr~grr~ 94 (116)
..+++++..++.|++.-|++.++
T Consensus 10 ~a~igLvvGi~IG~li~Rlt~~~ 32 (138)
T COG3105 10 YALIGLVVGIIIGALIARLTNRK 32 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHcchh
Confidence 34556666777788877777654
No 318
>PF08080 zf-RNPHF: RNPHF zinc finger; InterPro: IPR012996 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a putative zinc-binding domain (CHHC motif) in RNP H and F. The domain is often associated with IPR000504 from INTERPRO. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WEZ_A 2KG1_A.
Probab=42.24 E-value=8.4 Score=16.60 Aligned_cols=12 Identities=33% Similarity=0.340 Sum_probs=0.0
Q ss_pred hhhcccchhHHh
Q psy17792 86 LMDRMGRRTLHL 97 (116)
Q Consensus 86 l~dr~grr~~~~ 97 (116)
-+||+||-....
T Consensus 2 ~sd~FGRd~~~c 13 (36)
T PF08080_consen 2 TSDRFGRDLSYC 13 (36)
T ss_dssp ------------
T ss_pred ccchhcchhhHh
Confidence 369999865443
No 319
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=41.88 E-value=1.2e+02 Score=21.34 Aligned_cols=71 Identities=17% Similarity=0.202 Sum_probs=31.9
Q ss_pred HHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHH--------HhhhcccchhHHhhhhHHHH
Q psy17792 33 IVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISI--------PLMDRMGRRTLHLYGLGGMF 104 (116)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--------~l~dr~grr~~~~~~~~~~~ 104 (116)
.....|..+.| ..+..++|++=++.|-+-..+..-....+++..+..+++. -+.+|.|++.-.+...+...
T Consensus 8 ig~~LFamFFG-AGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvia~~~~~~~~~~l~~~v~~~f~~if~~~i~l 86 (427)
T PF05525_consen 8 IGFALFAMFFG-AGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVIAVAKSGGGIEDLASRVGPKFALIFTILIYL 86 (427)
T ss_pred HHHHHHHHHhC-CccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHhcccCcHHHHHHHHHHHH
Confidence 33344444555 3455577776555444332222222222222222222221 25667887776655544443
No 320
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=41.49 E-value=80 Score=19.06 Aligned_cols=22 Identities=5% Similarity=0.181 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHhhhcccchhHH
Q psy17792 75 VMVTMTIISIPLMDRMGRRTLH 96 (116)
Q Consensus 75 ~~~~~~~~~~~l~dr~grr~~~ 96 (116)
+-+++.+..+++..++..++.+
T Consensus 55 GVil~~~~~~~~l~~~k~~p~m 76 (165)
T PF11286_consen 55 GVILGLLLTSALLRQLKTHPFM 76 (165)
T ss_pred HHHHHHHHHHHHHHHHccChHH
Confidence 3444555566666677766654
No 321
>PRK14231 camphor resistance protein CrcB; Provisional
Probab=40.69 E-value=50 Score=18.87 Aligned_cols=7 Identities=14% Similarity=0.168 Sum_probs=3.0
Q ss_pred Hhhhccc
Q psy17792 85 PLMDRMG 91 (116)
Q Consensus 85 ~l~dr~g 91 (116)
++.+++.
T Consensus 115 ~l~~~~~ 121 (129)
T PRK14231 115 MLSNKLL 121 (129)
T ss_pred HHHHHHH
Confidence 3444443
No 322
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=40.13 E-value=71 Score=18.11 Aligned_cols=16 Identities=19% Similarity=0.264 Sum_probs=7.2
Q ss_pred HHHHHHHhhhcccchh
Q psy17792 79 MTIISIPLMDRMGRRT 94 (116)
Q Consensus 79 ~~~~~~~l~dr~grr~ 94 (116)
+..+++....|+.|.|
T Consensus 65 ~v~~gg~~l~rlKRGK 80 (121)
T PF11990_consen 65 GVFVGGKLLARLKRGK 80 (121)
T ss_pred HHHHhHHHHHHHHcCC
Confidence 3334445555554433
No 323
>KOG1277|consensus
Probab=40.05 E-value=62 Score=23.17 Aligned_cols=22 Identities=14% Similarity=0.244 Sum_probs=10.8
Q ss_pred hhhccccchHHHHHHHHHHHHHHh
Q psy17792 18 ELLCSSTLRKPLIIGIVMQLSQQF 41 (116)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~ 41 (116)
|+||-+..+ .++...+....|.
T Consensus 284 DVFR~p~~~--~Lfsa~lGsG~Ql 305 (593)
T KOG1277|consen 284 DVFRFPSHP--LLFSAVLGSGAQL 305 (593)
T ss_pred ccccCCCcc--HHHHHHhccccch
Confidence 578776444 4444444333333
No 324
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=39.74 E-value=92 Score=22.44 Aligned_cols=43 Identities=21% Similarity=0.105 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHH
Q psy17792 68 TTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFI 110 (116)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~ 110 (116)
.....+++.+...++.++++++.|....+..+.+++....+..
T Consensus 160 fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f 202 (498)
T COG3104 160 FYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIF 202 (498)
T ss_pred EEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Confidence 3445578899999999999999997776666666666555443
No 325
>cd02432 Nodulin-21_like_1 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=39.07 E-value=99 Score=19.47 Aligned_cols=49 Identities=10% Similarity=0.017 Sum_probs=25.6
Q ss_pred hhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhh
Q psy17792 45 NAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGL 100 (116)
Q Consensus 45 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~ 100 (116)
......+|+++.. .. .......+...+.-++.|++.-|++++++...+.
T Consensus 150 g~liPllpy~~~~----~~---~~~~~s~~~~~~aL~~~G~~~a~~~~~~~~~~~l 198 (218)
T cd02432 150 GALLPLLAILLAP----AA---WKVPVTIIATLLALALTGYVSARLGGASVLRAIL 198 (218)
T ss_pred HHHHHHHHHHHhc----ch---HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 3455566776522 11 1122233445566666777777777666654443
No 326
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=38.47 E-value=1.3e+02 Score=20.73 Aligned_cols=60 Identities=17% Similarity=0.115 Sum_probs=31.5
Q ss_pred hhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHH--------HHhhhcccchhHHhhhhHHHHH
Q psy17792 46 AVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIIS--------IPLMDRMGRRTLHLYGLGGMFI 105 (116)
Q Consensus 46 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--------~~l~dr~grr~~~~~~~~~~~~ 105 (116)
.+..++|++-++.|-+-..+.....+.+++..+..+.+ -.+.+|+||+.-++.+......
T Consensus 12 GNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~av~~~gG~~~~l~~~~g~~f~~lf~~~~~l~ 79 (378)
T TIGR00796 12 GNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLIALALVGGGYDSLSARIGKVFGILFTVILYLT 79 (378)
T ss_pred hHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHheeeecCCCHHHHHHHhChHHHHHHHHHHHHH
Confidence 45667788777766442222222223333333333321 1367799998877765554433
No 327
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=38.43 E-value=97 Score=19.15 Aligned_cols=10 Identities=10% Similarity=0.069 Sum_probs=6.4
Q ss_pred hHHhHHHHHh
Q psy17792 47 VFYYSTALFE 56 (116)
Q Consensus 47 ~~~~~~~~~~ 56 (116)
+..|.|++.+
T Consensus 113 igIYiP~Fa~ 122 (191)
T PF03596_consen 113 IGIYIPLFAS 122 (191)
T ss_pred EEEeehhhhc
Confidence 4457788763
No 328
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=38.29 E-value=38 Score=14.45 Aligned_cols=18 Identities=17% Similarity=-0.044 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHhhhc
Q psy17792 72 IGAVMVTMTIISIPLMDR 89 (116)
Q Consensus 72 ~~~~~~~~~~~~~~l~dr 89 (116)
..+.+++.+++.+|+-+|
T Consensus 17 P~iagIi~s~iv~w~~~R 34 (35)
T PF13940_consen 17 PIIAGIIASLIVGWLRNR 34 (35)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 345566666666666554
No 329
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=37.86 E-value=48 Score=15.51 Aligned_cols=26 Identities=8% Similarity=-0.220 Sum_probs=13.9
Q ss_pred HHHHHHHHHhhhcccchhHHhhhhHH
Q psy17792 77 VTMTIISIPLMDRMGRRTLHLYGLGG 102 (116)
Q Consensus 77 ~~~~~~~~~l~dr~grr~~~~~~~~~ 102 (116)
.++..++-++-++++.++......+.
T Consensus 15 ~~g~~~G~~lD~~~~t~p~~~~~g~l 40 (55)
T PF09527_consen 15 LVGFFLGYWLDKWFGTSPWFTLIGLL 40 (55)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHH
Confidence 33444444555667876666544333
No 330
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=37.42 E-value=1e+02 Score=20.63 Aligned_cols=62 Identities=11% Similarity=-0.072 Sum_probs=39.1
Q ss_pred HHhHHHHHhhcCCC-cch----hHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHH
Q psy17792 48 FYYSTALFESSGLS-EKT----AKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIF 109 (116)
Q Consensus 48 ~~~~~~~~~~~g~~-~~~----~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~ 109 (116)
....|...++..-+ +.+ ..+.....+++..++....+++-|+.|.-.-+....+++.++.+.
T Consensus 52 ~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~ 118 (372)
T PF00854_consen 52 PNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIV 118 (372)
T ss_dssp HHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHH
Confidence 34455555555433 221 236677778888888889999999998777666655555554443
No 331
>PF14068 YuiB: Putative membrane protein
Probab=37.25 E-value=34 Score=18.75 Aligned_cols=24 Identities=17% Similarity=0.077 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcccch
Q psy17792 70 IGIGAVMVTMTIISIPLMDRMGRR 93 (116)
Q Consensus 70 ~~~~~~~~~~~~~~~~l~dr~grr 93 (116)
......+++|+..+|+..+...+|
T Consensus 74 i~il~~Gl~GAi~SG~tIr~LRk~ 97 (102)
T PF14068_consen 74 ILILSSGLAGAIVSGITIRTLRKK 97 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344566888999999888766544
No 332
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=35.35 E-value=68 Score=16.50 Aligned_cols=30 Identities=10% Similarity=0.005 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhhhcccchhHHhhhhHHH
Q psy17792 74 AVMVTMTIISIPLMDRMGRRTLHLYGLGGM 103 (116)
Q Consensus 74 ~~~~~~~~~~~~l~dr~grr~~~~~~~~~~ 103 (116)
+...++...+.++.+++.+|.+-..+..++
T Consensus 45 ~~~~lav~~G~~l~~~ip~~~i~~~~~~lF 74 (78)
T PF01169_consen 45 LATGLAVLLGSWLASRIPERYIKWVAGALF 74 (78)
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 444555566667788888887766555444
No 333
>PRK11677 hypothetical protein; Provisional
Probab=34.22 E-value=63 Score=18.73 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHhhhcccc
Q psy17792 74 AVMVTMTIISIPLMDRMGR 92 (116)
Q Consensus 74 ~~~~~~~~~~~~l~dr~gr 92 (116)
+++++..++.|++.-|++.
T Consensus 7 ~i~livG~iiG~~~~R~~~ 25 (134)
T PRK11677 7 LIGLVVGIIIGAVAMRFGN 25 (134)
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 3445555555665555544
No 334
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=34.10 E-value=63 Score=15.75 Aligned_cols=17 Identities=12% Similarity=0.051 Sum_probs=7.7
Q ss_pred HHHHHHHHHhhhcccch
Q psy17792 77 VTMTIISIPLMDRMGRR 93 (116)
Q Consensus 77 ~~~~~~~~~l~dr~grr 93 (116)
.+|..++.++.++++++
T Consensus 38 ~~G~~~G~~~~~~~~~~ 54 (67)
T PF02659_consen 38 LLGLLLGRRLGRFIGSY 54 (67)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444455555544
No 335
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=33.91 E-value=81 Score=22.00 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHhhhcccchhHH
Q psy17792 73 GAVMVTMTIISIPLMDRMGRRTLH 96 (116)
Q Consensus 73 ~~~~~~~~~~~~~l~dr~grr~~~ 96 (116)
...+-+.+++++-+.||+|.|+.-
T Consensus 212 l~igNvfAIi~aall~~iG~K~ps 235 (438)
T COG3493 212 LTIGNVFAIICAALLNKIGKKKPS 235 (438)
T ss_pred HHHHHHHHHHHHHHHHHHcccCCC
Confidence 344556677788899999988543
No 336
>KOG3097|consensus
Probab=33.03 E-value=1.7e+02 Score=20.31 Aligned_cols=39 Identities=18% Similarity=0.095 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHH
Q psy17792 64 TAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGG 102 (116)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~ 102 (116)
.........++...+.+.+.|.++.++||-+....+...
T Consensus 311 ~igf~m~cfgv~~Av~S~~~g~L~~~~gr~~~~v~gavv 349 (390)
T KOG3097|consen 311 RIGFAMACFGVGDAVASSLFGLLGKWIGRPPLLVLGAVV 349 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHH
Confidence 445666777788888889999999999999988776544
No 337
>PF06939 DUF1286: Protein of unknown function (DUF1286); InterPro: IPR009705 This entry is represented by Sulfolobus virus STSV1, Orf8. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical archaeal proteins of around 120 residues in length. All members of this family seem to be Sulfolobus species specific. The function of this family is unknown.
Probab=32.40 E-value=68 Score=17.98 Aligned_cols=16 Identities=25% Similarity=0.617 Sum_probs=9.4
Q ss_pred HHHHHHHHHhhhcccc
Q psy17792 77 VTMTIISIPLMDRMGR 92 (116)
Q Consensus 77 ~~~~~~~~~l~dr~gr 92 (116)
.+.++++-.+.||+|.
T Consensus 33 ~iiSvl~N~lID~lGH 48 (114)
T PF06939_consen 33 GIISVLGNTLIDRLGH 48 (114)
T ss_pred HHHHHHHHHHHHhccc
Confidence 3344455566777765
No 338
>COG4708 Predicted membrane protein [Function unknown]
Probab=31.46 E-value=47 Score=19.61 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHhhhcccchh
Q psy17792 73 GAVMVTMTIISIPLMDRMGRRT 94 (116)
Q Consensus 73 ~~~~~~~~~~~~~l~dr~grr~ 94 (116)
+++-++...+++.+.|+.|+|.
T Consensus 144 a~gEfvsl~vg~~~m~kl~kr~ 165 (169)
T COG4708 144 ALGEFVSLYVGALIMDKLGKRI 165 (169)
T ss_pred HHHHHHHHHhhHHHHHHHHhhh
Confidence 4455666667778888888774
No 339
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=31.39 E-value=1.3e+02 Score=18.39 Aligned_cols=18 Identities=11% Similarity=0.433 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHhhhcc
Q psy17792 73 GAVMVTMTIISIPLMDRM 90 (116)
Q Consensus 73 ~~~~~~~~~~~~~l~dr~ 90 (116)
.+..++.+++--.+-.|+
T Consensus 78 gv~Si~aAllY~~~l~k~ 95 (173)
T PF11085_consen 78 GVFSIVAALLYYALLKKF 95 (173)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344455555544444444
No 340
>COG1178 ThiP ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]
Probab=31.37 E-value=2e+02 Score=21.00 Aligned_cols=42 Identities=21% Similarity=0.158 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHhh---hcccchhHHhhhhHHHHHHHHHH
Q psy17792 69 TIGIGAVMVTMTIISIPLM---DRMGRRTLHLYGLGGMFIFSIFI 110 (116)
Q Consensus 69 ~~~~~~~~~~~~~~~~~l~---dr~grr~~~~~~~~~~~~~~~~~ 110 (116)
.....+...+......|+. |.-|||..-....+...+--.+.
T Consensus 65 a~~~~~ls~~lG~~~A~l~~r~~fpGr~~l~~l~~lPl~iP~~V~ 109 (540)
T COG1178 65 AVLVTLLSVVLGIPLAWLLSRYDFPGRRLLRWLLALPLVIPPFVV 109 (540)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhhHHHH
Confidence 3333344444444444443 45577776666555554443333
No 341
>PTZ00208 65 kDa invariant surface glycoprotein; Provisional
Probab=31.28 E-value=74 Score=22.21 Aligned_cols=33 Identities=12% Similarity=0.178 Sum_probs=25.1
Q ss_pred HHHhhhcccchhHHhhhhHHHHHHHHHHHHHHc
Q psy17792 83 SIPLMDRMGRRTLHLYGLGGMFIFSIFITISLL 115 (116)
Q Consensus 83 ~~~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~ 115 (116)
..-++.|..|-++++...++.++++.+++++++
T Consensus 375 ~~~~~~~~~~~~~i~~avl~p~~il~~~~~~~~ 407 (436)
T PTZ00208 375 AAEVSSRHQRTAMIILAVLVPAIILAIIAVAFF 407 (436)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 455778899999999888888877776666543
No 342
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=30.88 E-value=1.5e+02 Score=22.28 Aligned_cols=37 Identities=8% Similarity=0.079 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhhhcc-------------cchhHHhhhhHHHHHHHHHH
Q psy17792 74 AVMVTMTIISIPLMDRM-------------GRRTLHLYGLGGMFIFSIFI 110 (116)
Q Consensus 74 ~~~~~~~~~~~~l~dr~-------------grr~~~~~~~~~~~~~~~~~ 110 (116)
.++++..++.+++-+|+ |+|.+.+.+...+.+..+++
T Consensus 99 fgGIi~G~i~a~l~nkf~~~klP~~l~fF~G~rfVpii~~~~~~~~g~i~ 148 (648)
T PRK10255 99 LAGIITGLVGGAAYNRWSDIKLPDFLSFFGGKRFVPIATGFFCLVLAAIF 148 (648)
T ss_pred hhhhHHHHHHHHHHHHhccccCCceeeecCCcchhHhHHHHHHHHHHHHH
Confidence 34556666677787776 67766666555544444433
No 343
>PRK02565 photosystem II reaction center protein J; Provisional
Probab=30.62 E-value=9.4 Score=16.82 Aligned_cols=14 Identities=29% Similarity=0.230 Sum_probs=7.1
Q ss_pred cchhHHhhhhHHHH
Q psy17792 91 GRRTLHLYGLGGMF 104 (116)
Q Consensus 91 grr~~~~~~~~~~~ 104 (116)
||-+..+.+.+...
T Consensus 5 GriPLWlV~tv~G~ 18 (39)
T PRK02565 5 GRIPLWLVATVAGM 18 (39)
T ss_pred CccceeehhhhhHH
Confidence 55565555544433
No 344
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=30.57 E-value=46 Score=13.10 Aligned_cols=15 Identities=20% Similarity=0.282 Sum_probs=8.6
Q ss_pred cccchhHHhhhhHHH
Q psy17792 89 RMGRRTLHLYGLGGM 103 (116)
Q Consensus 89 r~grr~~~~~~~~~~ 103 (116)
++.||..+-.+....
T Consensus 1 ~~sRR~fLk~~~a~~ 15 (26)
T PF10518_consen 1 NLSRRQFLKGGAAAA 15 (26)
T ss_pred CCcHHHHHHHHHHHH
Confidence 356777766554433
No 345
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=30.18 E-value=1.3e+02 Score=20.58 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHhhhcccchhH
Q psy17792 73 GAVMVTMTIISIPLMDRMGRRTL 95 (116)
Q Consensus 73 ~~~~~~~~~~~~~l~dr~grr~~ 95 (116)
...+-+.+++.+-+.||+|+|+.
T Consensus 126 ~~igni~AIi~agll~~lG~~~p 148 (347)
T TIGR00783 126 VIIGNIFAIICAGLLSRIGKKRP 148 (347)
T ss_pred HHHHHHHHHHHHHHHHHHhccCC
Confidence 34445555666667777776643
No 346
>COG1271 CydA Cytochrome bd-type quinol oxidase, subunit 1 [Energy production and conversion]
Probab=29.76 E-value=1.9e+02 Score=20.69 Aligned_cols=34 Identities=15% Similarity=0.219 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHH
Q psy17792 69 TIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGG 102 (116)
Q Consensus 69 ~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~ 102 (116)
..+..+....-+...||+.+-+||.+..+.+.+-
T Consensus 364 ~~i~~~pl~~ia~~~GW~vtEvGRQPWvVyg~l~ 397 (457)
T COG1271 364 ALILAIPLPWIAIEAGWIVTEVGRQPWVVYGVLK 397 (457)
T ss_pred HHHHHhHHHHHHHHhhHHHHhhcCCCceEecccc
Confidence 3333334445556789999999999987765443
No 347
>PRK11486 flagellar biosynthesis protein FliO; Provisional
Probab=29.47 E-value=1.2e+02 Score=17.41 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHH-HHHHhhhcccc
Q psy17792 67 FTTIGIGAVMVTMTI-ISIPLMDRMGR 92 (116)
Q Consensus 67 ~~~~~~~~~~~~~~~-~~~~l~dr~gr 92 (116)
+.....++..+++.+ ...|+..|+|.
T Consensus 18 l~qv~~~L~lVl~lI~~~aWLlkR~~~ 44 (124)
T PRK11486 18 LLQVSGALIGIIALILAAAWLVKRLGF 44 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 444455555555554 45799999874
No 348
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=29.13 E-value=71 Score=18.94 Aligned_cols=9 Identities=33% Similarity=0.313 Sum_probs=4.0
Q ss_pred cchhHHhhh
Q psy17792 91 GRRTLHLYG 99 (116)
Q Consensus 91 grr~~~~~~ 99 (116)
++|+++++.
T Consensus 14 ~kkkl~ii~ 22 (162)
T PRK07021 14 KKRKLWLII 22 (162)
T ss_pred CccchhHHH
Confidence 344444443
No 349
>TIGR02979 phageshock_pspD phage shock protein PspD. Members of this family are phage shock protein PspD, found in a minority of bacteria that carry the defining genes of the phage shock regulon (pspA, pspB, pspC, and pspF). It is found in Escherichia coli, Yersinia pestis, and closely related species, where it is part of the phage shock operon. It is known to be expressed but its function is unknown.
Probab=28.51 E-value=28 Score=16.91 Aligned_cols=17 Identities=24% Similarity=0.249 Sum_probs=13.1
Q ss_pred HHHHHhhhcccchhHHh
Q psy17792 81 IISIPLMDRMGRRTLHL 97 (116)
Q Consensus 81 ~~~~~l~dr~grr~~~~ 97 (116)
=+.||....+.||+.=.
T Consensus 22 G~aGw~vKsVsrkPLr~ 38 (59)
T TIGR02979 22 GVAGWAMKSVARRPLKM 38 (59)
T ss_pred hHHHHHHHHHhhccHHH
Confidence 35789999999997543
No 350
>cd02435 CCC1 CCC1. CCC1: This domain is present in the CCC1, an iron and manganese transporter of Saccharomyces cerevisiae. CCC1 is a transmembrane protein that is located in the vacuole and transfers the iron and manganese ions from the cytosol to the vacuole. This domain may be unique to certain fungi and plants.
Probab=28.46 E-value=1.7e+02 Score=18.84 Aligned_cols=20 Identities=5% Similarity=-0.117 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHhhhcccch
Q psy17792 74 AVMVTMTIISIPLMDRMGRR 93 (116)
Q Consensus 74 ~~~~~~~~~~~~l~dr~grr 93 (116)
+...+.-.+.|++..|++++
T Consensus 190 ~l~~~aL~ilG~~~s~~s~~ 209 (241)
T cd02435 190 IVTLVALFVFGYVKTWFTGG 209 (241)
T ss_pred HHHHHHHHHHHHHHHhhcCC
Confidence 34444445566666666633
No 351
>PRK03612 spermidine synthase; Provisional
Probab=28.13 E-value=2.3e+02 Score=20.45 Aligned_cols=31 Identities=16% Similarity=-0.104 Sum_probs=19.3
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHHHhhh
Q psy17792 58 SGLSEKTAKFTTIGIGAVMVTMTIISIPLMD 88 (116)
Q Consensus 58 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d 88 (116)
+|.+..........+.++..+|+.+++++.+
T Consensus 45 ~G~s~~~~~~ii~~fl~glalGs~l~~~~~~ 75 (521)
T PRK03612 45 LGDSVTQFSTVIGLMLFAMGVGALLSKYLLR 75 (521)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4666655555556666666777776666553
No 352
>cd02434 Nodulin-21_like_3 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_3: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=27.98 E-value=1.6e+02 Score=18.59 Aligned_cols=24 Identities=4% Similarity=0.027 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhhhcccchhHHhhh
Q psy17792 76 MVTMTIISIPLMDRMGRRTLHLYG 99 (116)
Q Consensus 76 ~~~~~~~~~~l~dr~grr~~~~~~ 99 (116)
..+...+.|+..-+++.++....+
T Consensus 180 ~~~~L~~~G~~~~~~~~~~~~~~~ 203 (225)
T cd02434 180 VAFTLFLLGSFKSKLYNGKWIISG 203 (225)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHH
Confidence 444555566666666655554433
No 353
>KOG3827|consensus
Probab=27.67 E-value=40 Score=23.25 Aligned_cols=58 Identities=3% Similarity=0.006 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHH
Q psy17792 26 RKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIIS 83 (116)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 83 (116)
||-.++.+.+.+...|..++.+.|...+.-.++..+.....+.-.+.++-++.+++++
T Consensus 62 WR~~lliF~~sf~~SWl~Fg~iwwlIA~~hGDL~~~~~~~~~tpCV~nV~sf~sAFLF 119 (400)
T KOG3827|consen 62 WRWMLLIFSLSFVLSWLFFGVIWWLIAYAHGDLEPDPPGENHTPCVMNVHSFTSAFLF 119 (400)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccCCCCcCCCcceeeccchhhhhee
Confidence 4445555667788888776655444444433443333112223344444445554444
No 354
>CHL00114 psbX photosystem II protein X; Reviewed
Probab=27.63 E-value=70 Score=14.21 Aligned_cols=7 Identities=43% Similarity=0.449 Sum_probs=3.6
Q ss_pred hhhcccc
Q psy17792 86 LMDRMGR 92 (116)
Q Consensus 86 l~dr~gr 92 (116)
-.||+.|
T Consensus 32 q~D~v~R 38 (39)
T CHL00114 32 QKDRTTR 38 (39)
T ss_pred ccceecc
Confidence 3455555
No 355
>KOG4812|consensus
Probab=27.55 E-value=1.5e+02 Score=19.30 Aligned_cols=30 Identities=7% Similarity=0.150 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHhhchhhhHHhHHHHHhh
Q psy17792 28 PLIIGIVMQLSQQFSGINAVFYYSTALFES 57 (116)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (116)
.+++.+++.+..+|.|+.....+......+
T Consensus 162 ~F~~af~vAflFnwIGFlltycl~tT~agR 191 (262)
T KOG4812|consen 162 IFMWAFIVAFLFNWIGFLLTYCLTTTHAGR 191 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Confidence 455666667777777765444444444433
No 356
>PF08405 Calici_PP_N: Viral polyprotein N-terminal; InterPro: IPR013614 This domain is found at the N terminus of non-structural viral polyproteins of the Caliciviridae subfamily. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity, 0044419 interspecies interaction between organisms
Probab=27.45 E-value=98 Score=20.88 Aligned_cols=15 Identities=13% Similarity=0.062 Sum_probs=11.4
Q ss_pred HHHHHhhhcccchhH
Q psy17792 81 IISIPLMDRMGRRTL 95 (116)
Q Consensus 81 ~~~~~l~dr~grr~~ 95 (116)
+..|+..||+||+--
T Consensus 234 m~~GfT~ekigr~l~ 248 (358)
T PF08405_consen 234 MALGFTSEKIGRMLS 248 (358)
T ss_pred hhhhhhHHHHHHHHH
Confidence 456889999998643
No 357
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=27.39 E-value=1.5e+02 Score=20.88 Aligned_cols=38 Identities=16% Similarity=0.179 Sum_probs=21.0
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHH
Q psy17792 59 GLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLH 96 (116)
Q Consensus 59 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~ 96 (116)
|.+.++..-........+-+.+++.+-+.+|+|+|+.-
T Consensus 181 g~~~~~~~s~~ipa~~lgNi~AIi~aglL~~lg~~~P~ 218 (414)
T PF03390_consen 181 GQDAEEYFSQLIPALTLGNIFAIIFAGLLNKLGKKKPK 218 (414)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 44443332233333444556666677778888877643
No 358
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=27.37 E-value=1.6e+02 Score=18.29 Aligned_cols=50 Identities=16% Similarity=0.083 Sum_probs=26.0
Q ss_pred hhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhH
Q psy17792 46 AVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLG 101 (116)
Q Consensus 46 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~ 101 (116)
......|+++.. +. . .......+...+.-.+.|....|+..++....+.-
T Consensus 146 ~liPllp~~~~~-~~-~----~a~~~s~~~~~~~L~~~G~~~a~~~~~~~~~~~l~ 195 (213)
T PF01988_consen 146 GLIPLLPYFFLP-SV-S----EAFIASIAVTILALFILGYFKARISGQSWWRSGLE 195 (213)
T ss_pred HHHHHHHHHHhh-hH-H----HHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 445566776654 11 1 22333344455555566666666666655554443
No 359
>PRK11431 multidrug efflux system protein; Provisional
Probab=27.29 E-value=1.2e+02 Score=16.70 Aligned_cols=22 Identities=18% Similarity=-0.081 Sum_probs=13.0
Q ss_pred HhhhcccchhHHhhhhHHHHHH
Q psy17792 85 PLMDRMGRRTLHLYGLGGMFIF 106 (116)
Q Consensus 85 ~l~dr~grr~~~~~~~~~~~~~ 106 (116)
+.-|+....+.+-...+..++.
T Consensus 77 ~f~e~~~~~~~~gi~lIi~GVv 98 (105)
T PRK11431 77 LLGESASPARLLSLALIVAGII 98 (105)
T ss_pred HhCCCCCHHHHHHHHHHHHHHH
Confidence 3457777777666555554443
No 360
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=27.14 E-value=2.4e+02 Score=20.23 Aligned_cols=12 Identities=8% Similarity=0.033 Sum_probs=6.1
Q ss_pred HHHhhcCCCcch
Q psy17792 53 ALFESSGLSEKT 64 (116)
Q Consensus 53 ~~~~~~g~~~~~ 64 (116)
...++.|.+..+
T Consensus 43 r~~kr~g~~~~~ 54 (460)
T PRK13108 43 RRLTARGGERGM 54 (460)
T ss_pred HHHHHcCCCHHH
Confidence 344555665544
No 361
>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]
Probab=27.11 E-value=1.6e+02 Score=18.25 Aligned_cols=30 Identities=20% Similarity=0.187 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchhHH
Q psy17792 67 FTTIGIGAVMVTMTIISIPLMDRMGRRTLH 96 (116)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~l~dr~grr~~~ 96 (116)
.......+++.+|..+.-++..++||+..-
T Consensus 58 ~~i~~~~lga~lGd~i~Y~iGr~~G~~~l~ 87 (208)
T COG0586 58 LVILVATLGALLGDLISYWIGRRFGRKLLR 87 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcHHHHH
Confidence 444555667777777777777777765543
No 362
>KOG2765|consensus
Probab=26.77 E-value=98 Score=21.57 Aligned_cols=30 Identities=10% Similarity=-0.045 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccchhHHhhh
Q psy17792 68 TTIGIGAVMVTMTIISIPLMDRMGRRTLHLYG 99 (116)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~ 99 (116)
++...+...+..+.+.+ .||+...|.+...
T Consensus 191 lSStSs~FtL~la~if~--~e~ft~sKllav~ 220 (416)
T KOG2765|consen 191 LSSTSSFFTLFLAAIFP--VERFTLSKLLAVF 220 (416)
T ss_pred hhhcchHHHHHHHHHcC--cchhhHHHHHHHH
Confidence 33444444444444444 7888777766543
No 363
>PRK13499 rhamnose-proton symporter; Provisional
Probab=26.49 E-value=2.2e+02 Score=19.53 Aligned_cols=25 Identities=20% Similarity=0.033 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccc
Q psy17792 68 TTIGIGAVMVTMTIISIPLMDRMGR 92 (116)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~l~dr~gr 92 (116)
...+.++...+|.+....-.|+.|-
T Consensus 75 ~~~l~G~~W~iG~i~~~~s~~~iGv 99 (345)
T PRK13499 75 PVFLFGALWGIGGITYGLTMRYLGM 99 (345)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHhhh
Confidence 3333444444444444444444443
No 364
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=26.42 E-value=1.4e+02 Score=17.25 Aligned_cols=12 Identities=17% Similarity=-0.139 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q psy17792 74 AVMVTMTIISIP 85 (116)
Q Consensus 74 ~~~~~~~~~~~~ 85 (116)
++.++++.+++|
T Consensus 86 lvsv~~~~~~~~ 97 (142)
T PF11712_consen 86 LVSVFAVFFAGW 97 (142)
T ss_pred HHHHHHHHHHHH
Confidence 333333444443
No 365
>COG3913 SciT Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.26 E-value=26 Score=21.83 Aligned_cols=15 Identities=40% Similarity=0.445 Sum_probs=11.4
Q ss_pred hhhcccchhHHhhhh
Q psy17792 86 LMDRMGRRTLHLYGL 100 (116)
Q Consensus 86 l~dr~grr~~~~~~~ 100 (116)
-+||.|||..+.+.+
T Consensus 80 SaDrvgR~fPl~vaa 94 (227)
T COG3913 80 SADRVGRRFPLLVAA 94 (227)
T ss_pred cchhhcccccHHHHH
Confidence 379999998776544
No 366
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=25.97 E-value=1.8e+02 Score=18.34 Aligned_cols=17 Identities=18% Similarity=0.137 Sum_probs=11.5
Q ss_pred HhhhcccchhHHhhhhH
Q psy17792 85 PLMDRMGRRTLHLYGLG 101 (116)
Q Consensus 85 ~l~dr~grr~~~~~~~~ 101 (116)
.+-||++||+.+.....
T Consensus 117 ~l~Ek~~~~~~l~~~~~ 133 (256)
T TIGR00688 117 FLKERISRFQFIAVIIA 133 (256)
T ss_pred HHhcCCCHHHHHHHHHH
Confidence 35688888887764443
No 367
>PF01769 MgtE: Divalent cation transporter; InterPro: IPR006667 This entry represents the integral membrane part of the eubacterial MgtE family of magnesium transporters. Related regions are found also in archaebacterial and eukaryotic proteins. All the archaebacterial and eukaryotic examples have two copies of the region. This suggests that the eubacterial examples may act as dimers.Proteins in this entry probably transport Mg2+ or other divalent cations into the cell. The alignment contains two highly conserved aspartates that may be involved in cation binding.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport; PDB: 2YVX_D 2ZY9_A.
Probab=25.90 E-value=1.3e+02 Score=16.93 Aligned_cols=31 Identities=3% Similarity=-0.219 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhhhcccchhHHhhhhHHHHHH
Q psy17792 76 MVTMTIISIPLMDRMGRRTLHLYGLGGMFIF 106 (116)
Q Consensus 76 ~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~ 106 (116)
..+.....+...+|.|.-|-...+-......
T Consensus 93 ~~~~~~~l~~~~~k~g~DPd~~~~P~iTtl~ 123 (135)
T PF01769_consen 93 ALLLGYLLPIILWKIGLDPDNASIPLITTLG 123 (135)
T ss_dssp HHHHHHHHHHHHHHTT--GGGS-STTHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCchHhHHHHHHHHH
Confidence 3335566677888999887666554444433
No 368
>PRK01821 hypothetical protein; Provisional
Probab=25.66 E-value=72 Score=18.44 Aligned_cols=22 Identities=0% Similarity=-0.209 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHhhhcccchh
Q psy17792 73 GAVMVTMTIISIPLMDRMGRRT 94 (116)
Q Consensus 73 ~~~~~~~~~~~~~l~dr~grr~ 94 (116)
.+...+.....|+..|+.-||+
T Consensus 101 vvST~lvl~vtg~~~~~l~~~~ 122 (133)
T PRK01821 101 IVSTLVVLLVVGWSSHYVHGER 122 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 3444555555666666665443
No 369
>PF01864 DUF46: Putative integral membrane protein DUF46; InterPro: IPR002726 This archaebacterial protein has no known function. It contains several predicted transmembrane regions, suggesting it is an integral membrane protein.
Probab=25.55 E-value=1.7e+02 Score=17.89 Aligned_cols=28 Identities=11% Similarity=0.049 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchh
Q psy17792 67 FTTIGIGAVMVTMTIISIPLMDRMGRRT 94 (116)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~l~dr~grr~ 94 (116)
......+.+.++|-++.+++=.|+|.++
T Consensus 89 ~~g~ll~~gamlGDl~~SFIKRRlgi~~ 116 (175)
T PF01864_consen 89 LLGFLLGLGAMLGDLPGSFIKRRLGIPR 116 (175)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhcCCCC
Confidence 3455567777888888888888888664
No 370
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=25.54 E-value=38 Score=22.24 Aligned_cols=28 Identities=14% Similarity=0.234 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchh
Q psy17792 67 FTTIGIGAVMVTMTIISIPLMDRMGRRT 94 (116)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~l~dr~grr~ 94 (116)
++....+++.+....+.|.+.+|+.||+
T Consensus 231 lIslAiALG~v~ll~l~Gii~~~~~r~~ 258 (281)
T PF12768_consen 231 LISLAIALGTVFLLVLIGIILAYIRRRR 258 (281)
T ss_pred EEehHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444455555555556777777777663
No 371
>PRK02251 putative septation inhibitor protein; Reviewed
Probab=25.12 E-value=1.2e+02 Score=16.17 Aligned_cols=11 Identities=18% Similarity=0.356 Sum_probs=4.7
Q ss_pred cccchHHHHHH
Q psy17792 22 SSTLRKPLIIG 32 (116)
Q Consensus 22 ~~~~~~~~~~~ 32 (116)
++++..+++++
T Consensus 30 sP~W~~~~m~~ 40 (87)
T PRK02251 30 NPRWFVPLFVA 40 (87)
T ss_pred CCchHHHHHHH
Confidence 34444444433
No 372
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=24.97 E-value=2.6e+02 Score=19.89 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=9.5
Q ss_pred hhhcccchhHHhhhh
Q psy17792 86 LMDRMGRRTLHLYGL 100 (116)
Q Consensus 86 l~dr~grr~~~~~~~ 100 (116)
+++|+||+.-.+...
T Consensus 70 l~~~i~~~fg~~f~~ 84 (431)
T COG1114 70 LATRIGPWFGVLFAI 84 (431)
T ss_pred HhhhccchHHHHHHH
Confidence 677788776554433
No 373
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=24.70 E-value=1.6e+02 Score=20.61 Aligned_cols=19 Identities=11% Similarity=-0.162 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHhhhcccc
Q psy17792 74 AVMVTMTIISIPLMDRMGR 92 (116)
Q Consensus 74 ~~~~~~~~~~~~l~dr~gr 92 (116)
.+.++|.+++-|+.+|.+.
T Consensus 171 ~GgliGgpva~~li~k~~l 189 (404)
T COG0786 171 AGGLIGGPVARWLIKKNKL 189 (404)
T ss_pred HhHhcCcHHHHHHHHhcCC
Confidence 3456666777777766643
No 374
>KOG1307|consensus
Probab=24.48 E-value=26 Score=24.92 Aligned_cols=19 Identities=11% Similarity=0.394 Sum_probs=11.2
Q ss_pred hhhHHhHHHHHhhcCCCcc
Q psy17792 45 NAVFYYSTALFESSGLSEK 63 (116)
Q Consensus 45 ~~~~~~~~~~~~~~g~~~~ 63 (116)
+.+.+|...+=..+|.+..
T Consensus 441 YLMVWwa~~iGeT~gIp~e 459 (588)
T KOG1307|consen 441 YLMVWWANIIGETLGIPDE 459 (588)
T ss_pred HHHHHHHHHcccccCCCHH
Confidence 4556666655556666654
No 375
>PRK01658 holin-like protein; Validated
Probab=24.36 E-value=75 Score=18.02 Aligned_cols=20 Identities=10% Similarity=0.077 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHhhhcccc
Q psy17792 73 GAVMVTMTIISIPLMDRMGR 92 (116)
Q Consensus 73 ~~~~~~~~~~~~~l~dr~gr 92 (116)
.+...+.....|+..|+.-|
T Consensus 96 vvsT~l~l~vtg~~~~~l~~ 115 (122)
T PRK01658 96 VISTFVVMIVTGYLTQLLAK 115 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555666665444
No 376
>COG2212 MnhF Multisubunit Na+/H+ antiporter, MnhF subunit [Inorganic ion transport and metabolism]
Probab=23.96 E-value=1.3e+02 Score=16.11 Aligned_cols=24 Identities=13% Similarity=0.220 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccc
Q psy17792 68 TTIGIGAVMVTMTIISIPLMDRMGR 92 (116)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~l~dr~gr 92 (116)
......+.+++++....+..+| |+
T Consensus 64 ialvlalL~FigTva~akfl~r-G~ 87 (89)
T COG2212 64 IALVLALLGFIGTVAFAKFLER-GE 87 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 3556678889999988888876 65
No 377
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=23.62 E-value=2.9e+02 Score=20.00 Aligned_cols=21 Identities=14% Similarity=-0.058 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy17792 67 FTTIGIGAVMVTMTIISIPLM 87 (116)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~l~ 87 (116)
....+...+.++.+++++.+.
T Consensus 371 ~l~~lw~~v~~PL~~lG~~~g 391 (521)
T PF02990_consen 371 FLIALWFFVSIPLTFLGGYFG 391 (521)
T ss_pred HHHHHHHHHhhhhhhcchhhh
Confidence 333344444555555555555
No 378
>COG1470 Predicted membrane protein [Function unknown]
Probab=23.54 E-value=83 Score=22.52 Aligned_cols=10 Identities=40% Similarity=0.816 Sum_probs=7.9
Q ss_pred HHhhhcccch
Q psy17792 84 IPLMDRMGRR 93 (116)
Q Consensus 84 ~~l~dr~grr 93 (116)
-++..|+|||
T Consensus 504 ~fviRK~GRR 513 (513)
T COG1470 504 IFVIRKFGRR 513 (513)
T ss_pred HhhhHHhcCC
Confidence 3578899997
No 379
>COG4125 Predicted membrane protein [Function unknown]
Probab=23.17 E-value=1.7e+02 Score=17.17 Aligned_cols=41 Identities=20% Similarity=0.054 Sum_probs=25.3
Q ss_pred HHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy17792 51 STALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMG 91 (116)
Q Consensus 51 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~g 91 (116)
.|...--+|.+..+.+.......-.+.+.+.+.-.+-||.-
T Consensus 28 ap~~A~L~~~p~~~mG~l~i~~atvAm~WN~vyN~lFd~~~ 68 (149)
T COG4125 28 APVLALLMGKPILHMGALTILSATVAMIWNFVYNLLFDRAE 68 (149)
T ss_pred HHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34433345777777777777776666666666665555543
No 380
>TIGR00807 malonate_madL malonate transporter, MadL subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=23.01 E-value=1.4e+02 Score=17.05 Aligned_cols=29 Identities=10% Similarity=0.166 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccchh
Q psy17792 66 KFTTIGIGAVMVTMTIISIPLMDRMGRRT 94 (116)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~l~dr~grr~ 94 (116)
+....+.++...+.++..-.+.+|+||+.
T Consensus 91 G~~Allagi~av~~~~~~i~~l~r~g~~~ 119 (125)
T TIGR00807 91 GMLALLASVAALIVTVLVIRWISKSSYGT 119 (125)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34555566666777777777788888764
No 381
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=22.97 E-value=2.3e+02 Score=18.48 Aligned_cols=16 Identities=25% Similarity=0.140 Sum_probs=11.0
Q ss_pred hhhcccchhHHhhhhH
Q psy17792 86 LMDRMGRRTLHLYGLG 101 (116)
Q Consensus 86 l~dr~grr~~~~~~~~ 101 (116)
+-||.+||+.......
T Consensus 121 l~E~~~~~~~~g~~l~ 136 (296)
T PRK15430 121 LGERFRRMQWLAVILA 136 (296)
T ss_pred hcCCCcHHHHHHHHHH
Confidence 4688998887754433
No 382
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=22.88 E-value=87 Score=13.68 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=8.0
Q ss_pred hhHHhhhhHHHHHHHHHH
Q psy17792 93 RTLHLYGLGGMFIFSIFI 110 (116)
Q Consensus 93 r~~~~~~~~~~~~~~~~~ 110 (116)
|.++..+.....++.+++
T Consensus 14 r~Wi~F~l~mi~vFi~li 31 (38)
T PF09125_consen 14 RGWIAFALAMILVFIALI 31 (38)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 383
>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins. Q12239 from SWISSPROT, a Saccharomyces cerevisiae (Baker's yeast) protein, has been shown to localise COP II vesicles [].
Probab=22.85 E-value=1.4e+02 Score=16.09 Aligned_cols=18 Identities=0% Similarity=0.098 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHhhhc
Q psy17792 72 IGAVMVTMTIISIPLMDR 89 (116)
Q Consensus 72 ~~~~~~~~~~~~~~l~dr 89 (116)
.++...+...+...+.|.
T Consensus 58 tnl~~~~~~~~~y~i~~~ 75 (99)
T PF08551_consen 58 TNLLTFLLYLLLYAITGN 75 (99)
T ss_pred hHHHHHHHHHHHHHHhCC
Confidence 334444444444444443
No 384
>CHL00190 psaM photosystem I subunit XII; Provisional
Probab=22.60 E-value=80 Score=13.14 Aligned_cols=17 Identities=18% Similarity=0.243 Sum_probs=9.6
Q ss_pred HHHHHHHHHHhhhcccc
Q psy17792 76 MVTMTIISIPLMDRMGR 92 (116)
Q Consensus 76 ~~~~~~~~~~l~dr~gr 92 (116)
..+.+++.+.++-|.|.
T Consensus 10 AL~~Al~~~iLA~rLg~ 26 (30)
T CHL00190 10 ALFLALTTGILAIRLGT 26 (30)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455556666666653
No 385
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=22.34 E-value=3.2e+02 Score=19.98 Aligned_cols=38 Identities=29% Similarity=0.212 Sum_probs=24.2
Q ss_pred HHHHHHH-HHHHHHHHHHhhhcccchhHHhhhhHHHHHH
Q psy17792 69 TIGIGAV-MVTMTIISIPLMDRMGRRTLHLYGLGGMFIF 106 (116)
Q Consensus 69 ~~~~~~~-~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~ 106 (116)
....++. .++...+++-+.+|.|....-+..-++..+.
T Consensus 327 ~~~tgvv~~v~~~~~~s~~ir~~GW~~~AlitPiv~lit 365 (509)
T COG3202 327 QIWTGVVSLVVFLFPGSNLIRRVGWFTGALITPLVMLIT 365 (509)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4444555 4555667788999999877666655444444
No 386
>PRK05529 cell division protein FtsQ; Provisional
Probab=22.32 E-value=1.3e+02 Score=19.44 Aligned_cols=15 Identities=33% Similarity=0.361 Sum_probs=7.6
Q ss_pred hcccchhHHhhhhHH
Q psy17792 88 DRMGRRTLHLYGLGG 102 (116)
Q Consensus 88 dr~grr~~~~~~~~~ 102 (116)
.|..||+..+.+.++
T Consensus 29 ~~~~~r~~~~~~~~~ 43 (255)
T PRK05529 29 TRIRRRFILLACAVG 43 (255)
T ss_pred hhccchhhhHHHHHH
Confidence 444555555554444
No 387
>TIGR02908 CoxD_Bacillus cytochrome c oxidase, subunit IVB. This model represents a small clade of cytochrome oxidase subunit IV's found in the Bacilli.
Probab=22.28 E-value=1.6e+02 Score=16.50 Aligned_cols=37 Identities=14% Similarity=0.064 Sum_probs=20.6
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhH
Q psy17792 59 GLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTL 95 (116)
Q Consensus 59 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~ 95 (116)
.++...........++.+.+.-+..=.-.|+-||-..
T Consensus 50 ~l~~~~~~~~I~~lAvvQi~VqL~yFLHm~~k~~~~~ 86 (110)
T TIGR02908 50 EIDKWFVIPFILLLAAVQVAFQLYYFMHMKDKGHEVP 86 (110)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHheeeCCCccchH
Confidence 3455555555566677777776654333344555544
No 388
>PF09584 Phageshock_PspD: Phage shock protein PspD (Phageshock_PspD); InterPro: IPR014321 Members of this entry are phage shock protein PspD, they are found in a minority of bacteria that carry the defining genes of the phage shock regulon (pspA, pspB, pspC, and pspF). It is found in Escherichia coli, Yersinia pestis, and closely related species, where it is part of the phage shock operon. It is known to be expressed but its function is unknown.
Probab=21.96 E-value=1.1e+02 Score=15.32 Aligned_cols=17 Identities=18% Similarity=0.106 Sum_probs=12.6
Q ss_pred HHHHHhhhcccchhHHh
Q psy17792 81 IISIPLMDRMGRRTLHL 97 (116)
Q Consensus 81 ~~~~~l~dr~grr~~~~ 97 (116)
=+.||+...++||++=.
T Consensus 27 GiAg~~vk~VarkPLR~ 43 (66)
T PF09584_consen 27 GIAGWAVKSVARKPLRW 43 (66)
T ss_pred HHHHHHHHHHhhccHHH
Confidence 35688888999987543
No 389
>PF03817 MadL: Malonate transporter MadL subunit; InterPro: IPR004690 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=21.53 E-value=1.3e+02 Score=17.20 Aligned_cols=28 Identities=32% Similarity=0.544 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchh
Q psy17792 67 FTTIGIGAVMVTMTIISIPLMDRMGRRT 94 (116)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~l~dr~grr~ 94 (116)
......++...+.++..-.+.+|+||+.
T Consensus 92 ~~Allagi~av~~~~~~ip~lsr~g~~~ 119 (125)
T PF03817_consen 92 PVALLAGIGAVAVCFLLIPLLSRIGRKT 119 (125)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4445556666667777777888888765
No 390
>TIGR00821 EII-GUT PTS system, glucitol/sorbitol-specific, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Gut family consists only of glucitol-specific transporters, but these occur both in Gram-negative and Gram-positive bacteria.E. coli consists of IIA protein, a IIC protein and a IIBC protein. This family is specific for the IIC component.
Probab=21.40 E-value=2.1e+02 Score=17.53 Aligned_cols=21 Identities=10% Similarity=-0.089 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q psy17792 70 IGIGAVMVTMTIISIPLMDRM 90 (116)
Q Consensus 70 ~~~~~~~~~~~~~~~~l~dr~ 90 (116)
.-+.+++++..++-||+.|+.
T Consensus 144 vrY~lvGlv~~firG~vTe~~ 164 (181)
T TIGR00821 144 VSYLLVGLVTNFFRGWVTDLT 164 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334566777777888888865
No 391
>CHL00108 psbJ photosystem II protein J
Probab=21.28 E-value=7.5 Score=17.22 Aligned_cols=15 Identities=33% Similarity=0.333 Sum_probs=7.9
Q ss_pred ccchhHHhhhhHHHH
Q psy17792 90 MGRRTLHLYGLGGMF 104 (116)
Q Consensus 90 ~grr~~~~~~~~~~~ 104 (116)
-||-+..+.+.+...
T Consensus 5 tGRiPLWlVgtv~G~ 19 (40)
T CHL00108 5 TGRIPLWLIGTVAGI 19 (40)
T ss_pred cccccEEeeeehhhH
Confidence 366666555544433
No 392
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=21.27 E-value=2.9e+02 Score=19.10 Aligned_cols=48 Identities=15% Similarity=0.050 Sum_probs=26.8
Q ss_pred hHHHHHhh-cCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHh
Q psy17792 50 YSTALFES-SGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHL 97 (116)
Q Consensus 50 ~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~ 97 (116)
-.|.+..+ .|++.++.........+...+++++..+-.-++|.|..+.
T Consensus 14 ~~p~i~~~a~gl~~~~~~~~i~at~l~sgi~tllq~~~~~~~G~~~P~~ 62 (406)
T TIGR03173 14 AVPLIVGGALGLSAEQTAYLISADLFACGIATLIQTLGIGPFGIRLPVV 62 (406)
T ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhccccccCCcccee
Confidence 34555554 4888766555555555666666666543332455554443
No 393
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=21.21 E-value=1.6e+02 Score=15.96 Aligned_cols=22 Identities=14% Similarity=0.007 Sum_probs=13.2
Q ss_pred hhhcccchhHHhhhhHHHHHHH
Q psy17792 86 LMDRMGRRTLHLYGLGGMFIFS 107 (116)
Q Consensus 86 l~dr~grr~~~~~~~~~~~~~~ 107 (116)
+-+|..+|+.........++..
T Consensus 82 ~~er~~~~~~~a~~l~~~Gv~l 103 (113)
T PF13536_consen 82 FKERLSPRRWLAILLILIGVIL 103 (113)
T ss_pred hcCCCCHHHHHHHHHHHHHHHH
Confidence 4478888877655444444433
No 394
>COG3833 MalG ABC-type maltose transport systems, permease component [Carbohydrate transport and metabolism]
Probab=21.20 E-value=2.6e+02 Score=18.57 Aligned_cols=38 Identities=18% Similarity=0.202 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc---ccchhHHhhhhHHHH
Q psy17792 67 FTTIGIGAVMVTMTIISIPLMDR---MGRRTLHLYGLGGMF 104 (116)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~l~dr---~grr~~~~~~~~~~~ 104 (116)
.......+.......+.++--.| .|||..+....+...
T Consensus 80 iva~~t~~i~v~~~~~~aYafSR~rF~GRk~~L~~~LilqM 120 (282)
T COG3833 80 IVALITAAITVALVTLAAYAFSRYRFKGRKYLLKFFLILQM 120 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 34444455555556666665554 477776665554433
No 395
>CHL00024 psbI photosystem II protein I
Probab=21.12 E-value=73 Score=13.80 Aligned_cols=20 Identities=20% Similarity=0.165 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHhhhcccch
Q psy17792 74 AVMVTMTIISIPLMDRMGRR 93 (116)
Q Consensus 74 ~~~~~~~~~~~~l~dr~grr 93 (116)
+..+++-++.|++++-=+|.
T Consensus 12 V~ffvsLFifGFlsnDp~Rn 31 (36)
T CHL00024 12 VIFFVSLFIFGFLSNDPGRN 31 (36)
T ss_pred HHHHHHHHHccccCCCCCCC
Confidence 33455556677777665554
No 396
>KOG4006|consensus
Probab=21.01 E-value=99 Score=20.69 Aligned_cols=26 Identities=19% Similarity=0.521 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhhhcccchhHHhhhh
Q psy17792 75 VMVTMTIISIPLMDRMGRRTLHLYGL 100 (116)
Q Consensus 75 ~~~~~~~~~~~l~dr~grr~~~~~~~ 100 (116)
+....+++..+|-+|+-||++=+.|-
T Consensus 5 i~valnfvisylynklprrrv~ifge 30 (311)
T KOG4006|consen 5 IQVALNFVISYLYNKLPRRRVNIFGE 30 (311)
T ss_pred HHHHHHHHHHHHhccCCccccchhHH
Confidence 35667788899999999999877664
No 397
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=20.98 E-value=96 Score=13.45 Aligned_cols=20 Identities=20% Similarity=0.165 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHhhhcccch
Q psy17792 74 AVMVTMTIISIPLMDRMGRR 93 (116)
Q Consensus 74 ~~~~~~~~~~~~l~dr~grr 93 (116)
+..+++-++.|++++--+|.
T Consensus 12 V~ffv~LFifGflsnDp~Rn 31 (36)
T PF02532_consen 12 VIFFVSLFIFGFLSNDPGRN 31 (36)
T ss_dssp HHHHHHHHHHHHHTTCTTSS
T ss_pred HHHHHHHHhccccCCCCCCC
Confidence 44555666778887766654
No 398
>PF15562 Imm10: Immunity protein 10
Probab=20.97 E-value=1.2e+02 Score=14.80 Aligned_cols=7 Identities=29% Similarity=0.833 Sum_probs=4.8
Q ss_pred hcccchh
Q psy17792 88 DRMGRRT 94 (116)
Q Consensus 88 dr~grr~ 94 (116)
|.+|||.
T Consensus 35 ~~fGr~~ 41 (61)
T PF15562_consen 35 ENFGRKG 41 (61)
T ss_pred HHcCCcc
Confidence 7777764
No 399
>PF13150 DUF3989: Protein of unknown function (DUF3989)
Probab=20.81 E-value=1.5e+02 Score=15.66 Aligned_cols=16 Identities=13% Similarity=0.137 Sum_probs=6.9
Q ss_pred HHhhhhHHHHHHHHHH
Q psy17792 95 LHLYGLGGMFIFSIFI 110 (116)
Q Consensus 95 ~~~~~~~~~~~~~~~~ 110 (116)
+.+..++++++.++.+
T Consensus 30 vvl~ml~~fa~l~ly~ 45 (85)
T PF13150_consen 30 VVLVMLVLFAALCLYM 45 (85)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 400
>PF10399 UCR_Fe-S_N: Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal; InterPro: IPR019470 This entry represents the TAT-signal region found in the iron-sulphur subunit of Ubiquinol-cytochrome C reductase (also known as the cytochrome bc1 complex). This enzymex is an oligomeric membrane protein complex that is a component of respiratory and photosynthetic electron transfer chains. It couples the transfer of electrons from ubiquinol to cytochrome c with the generation of a protein gradient across the membrane []. This entry is associated with IPR017941 from INTERPRO, IPR004192 from INTERPRO and IPR015248 from INTERPRO. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0055114 oxidation-reduction process; PDB: 1ZRT_R 2QJY_R 2FYN_L 2QJK_O 2QJP_I 2YIU_F.
Probab=20.71 E-value=1e+02 Score=13.76 Aligned_cols=10 Identities=20% Similarity=0.125 Sum_probs=4.7
Q ss_pred cccchhHHhh
Q psy17792 89 RMGRRTLHLY 98 (116)
Q Consensus 89 r~grr~~~~~ 98 (116)
.-+||..+..
T Consensus 8 ~~~RRdFL~~ 17 (41)
T PF10399_consen 8 DPTRRDFLTI 17 (41)
T ss_dssp --HHHHHHHH
T ss_pred CchHHHHHHH
Confidence 3456766643
No 401
>cd02431 Ferritin_CCC1_C CCC1-related domain of ferritin. Ferritin_CCC1_like_C: The proteins of this family contain two domains. This is the C-terminal domain that is closely related to the CCC1, a vacuole transmembrane protein functioning as an iron and manganese transporter. The N-terminal domain is similar to ferritin-like diiron-carboxylate proteins, which are involved in a variety of iron ion related functions, such as iron storage and regulation, mono-oxygenation, and reactive radical production. This family may be unique to certain bacteria and archaea.
Probab=20.59 E-value=2e+02 Score=16.95 Aligned_cols=23 Identities=9% Similarity=-0.074 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhhhcccchhHHhh
Q psy17792 76 MVTMTIISIPLMDRMGRRTLHLY 98 (116)
Q Consensus 76 ~~~~~~~~~~l~dr~grr~~~~~ 98 (116)
..+.-.+.|...-|+++++....
T Consensus 105 ~~~~L~~~G~~~~~~s~~~~~~~ 127 (149)
T cd02431 105 AVLAILIFNFYISVASGISFRKK 127 (149)
T ss_pred HHHHHHHHHHHHHHhCCCcHHHH
Confidence 33444445555555555554433
No 402
>PF11752 DUF3309: Protein of unknown function (DUF3309); InterPro: IPR021738 This family is conserved in bacteria but its function is not known.
Probab=20.21 E-value=1.2e+02 Score=14.25 Aligned_cols=33 Identities=12% Similarity=0.106 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHhhhcccchhHHhhhhHHHHHH
Q psy17792 74 AVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIF 106 (116)
Q Consensus 74 ~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~ 106 (116)
+...++++..-.-+..+|..+.-..|.+...+.
T Consensus 9 il~LigalP~wp~sr~wGy~PsG~lG~ilvivi 41 (49)
T PF11752_consen 9 ILLLIGALPTWPYSRGWGYGPSGGLGLILVIVI 41 (49)
T ss_pred HHHHHhcCCCCCCCCCCCcCCccHHHHHHHHHH
Confidence 344555555555666777777666665544443
No 403
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=20.13 E-value=2.3e+02 Score=17.53 Aligned_cols=28 Identities=4% Similarity=0.081 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccchhHH
Q psy17792 69 TIGIGAVMVTMTIISIPLMDRMGRRTLH 96 (116)
Q Consensus 69 ~~~~~~~~~~~~~~~~~l~dr~grr~~~ 96 (116)
........++|..++.++.+|+.+|..-
T Consensus 199 ~~~~~~~~~~G~~lG~~~~~~i~~~~~~ 226 (240)
T PF01925_consen 199 SLILLPGAFLGAFLGAKLARKIPQKVFR 226 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 3445566677777888888888765543
No 404
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=20.09 E-value=3.2e+02 Score=19.14 Aligned_cols=15 Identities=13% Similarity=0.490 Sum_probs=7.1
Q ss_pred HhHHHHHhhcCCCcc
Q psy17792 49 YYSTALFESSGLSEK 63 (116)
Q Consensus 49 ~~~~~~~~~~g~~~~ 63 (116)
-+.|.+.+++|.+..
T Consensus 142 A~g~~f~e~~G~~~a 156 (398)
T TIGR00210 142 AWSPVFYDNYGFRNA 156 (398)
T ss_pred HHHHHHHHHcCchhH
Confidence 344444444565543
Done!