Query psy17792
Match_columns 116
No_of_seqs 154 out of 1016
Neff 11.0
Searched_HMMs 29240
Date Fri Aug 16 23:14:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17792.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17792hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 99.2 1.1E-10 3.7E-15 76.4 9.4 77 34-110 32-108 (438)
2 4gc0_A D-xylose-proton symport 99.2 3.4E-10 1.2E-14 75.1 11.5 86 27-112 276-361 (491)
3 1pw4_A Glycerol-3-phosphate tr 99.1 3.5E-10 1.2E-14 74.1 7.2 84 28-112 28-111 (451)
4 3o7q_A L-fucose-proton symport 99.1 5.2E-10 1.8E-14 73.1 7.9 92 14-110 249-342 (438)
5 4aps_A DI-OR tripeptide H+ sym 99.0 3.6E-09 1.2E-13 70.2 9.5 84 29-112 15-104 (491)
6 2xut_A Proton/peptide symporte 98.9 6E-09 2E-13 69.7 8.6 77 36-112 21-104 (524)
7 2gfp_A EMRD, multidrug resista 98.9 9.6E-09 3.3E-13 66.0 9.1 71 42-112 14-84 (375)
8 2cfq_A Lactose permease; trans 98.9 5E-09 1.7E-13 68.6 6.8 58 46-103 25-83 (417)
9 1pw4_A Glycerol-3-phosphate tr 98.9 1.8E-08 6E-13 66.0 9.2 64 41-104 265-331 (451)
10 4gc0_A D-xylose-proton symport 98.7 3.6E-08 1.2E-12 65.4 7.0 47 65-111 57-103 (491)
11 2cfq_A Lactose permease; trans 98.5 1.2E-07 4.2E-12 62.1 3.9 43 66-108 262-304 (417)
12 2gfp_A EMRD, multidrug resista 97.8 1.9E-06 6.5E-11 55.3 -0.5 75 14-93 190-265 (375)
13 4aps_A DI-OR tripeptide H+ sym 97.6 0.00014 4.9E-09 48.2 6.0 49 49-97 304-353 (491)
14 2g9p_A Antimicrobial peptide l 87.4 0.27 9.3E-06 18.3 1.1 14 82-95 2-15 (26)
15 3arc_J Photosystem II reaction 79.4 2.8 9.5E-05 17.9 2.9 27 88-114 3-29 (40)
16 2xut_A Proton/peptide symporte 62.4 31 0.0011 22.9 9.1 36 68-103 153-188 (524)
17 4dve_A Biotin transporter BIOY 59.3 26 0.00087 20.9 5.5 24 70-93 100-123 (198)
18 4b19_A PEPA1; toxin, toxin apo 48.2 14 0.00049 14.7 2.1 17 73-89 11-27 (30)
19 2jpj_A Bacteriocin lactococcin 37.1 11 0.00038 15.6 0.6 9 86-94 29-37 (39)
20 1cmk_I CAMP-dependent protein 36.2 8.3 0.00028 14.8 0.1 10 87-96 9-18 (26)
21 2ksf_A Sensor protein KDPD; me 23.0 82 0.0028 16.5 2.6 23 71-93 84-106 (107)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.22 E-value=1.1e-10 Score=76.36 Aligned_cols=77 Identities=10% Similarity=-0.081 Sum_probs=63.6
Q ss_pred HHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHH
Q psy17792 34 VMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFI 110 (116)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~ 110 (116)
...++.............|.+.+++|.+..+.++......++..++.++.|+++||+|||++++.+.++.++..+..
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~ 108 (438)
T 3o7q_A 32 CSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALF 108 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 33344344444566777888999999999999999999999999999999999999999999999888887776665
No 2
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.21 E-value=3.4e-10 Score=75.07 Aligned_cols=86 Identities=34% Similarity=0.602 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHH
Q psy17792 27 KPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIF 106 (116)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~ 106 (116)
++.........+.+..+.+...+|.|++.+..+.+..+.........+...++.++++++.||+|||+.++.+..++.++
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~ 355 (491)
T 4gc0_A 276 GVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIG 355 (491)
T ss_dssp THHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHH
Confidence 34556677778888999999999999999999988888778888889999999999999999999999998888777766
Q ss_pred HHHHHH
Q psy17792 107 SIFITI 112 (116)
Q Consensus 107 ~~~~~~ 112 (116)
.+.++.
T Consensus 356 ~~~l~~ 361 (491)
T 4gc0_A 356 MFSLGT 361 (491)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665544
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.08 E-value=3.5e-10 Score=74.10 Aligned_cols=84 Identities=18% Similarity=0.163 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHhhchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHH
Q psy17792 28 PLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFS 107 (116)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~ 107 (116)
+.+.......+...........+.|.+.++. .+..+.++......++..++.++.|+++||+|||+++..+.++.++..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~ 106 (451)
T 1pw4_A 28 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVM 106 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 3344444444444444455667788888888 899999999999999999999999999999999999999988888877
Q ss_pred HHHHH
Q psy17792 108 IFITI 112 (116)
Q Consensus 108 ~~~~~ 112 (116)
+..++
T Consensus 107 ~~~~~ 111 (451)
T 1pw4_A 107 LFMGF 111 (451)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 76665
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.08 E-value=5.2e-10 Score=73.12 Aligned_cols=92 Identities=14% Similarity=0.084 Sum_probs=62.5
Q ss_pred chhhhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHH-Hhh-cCCCcchhHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy17792 14 ISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTAL-FES-SGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMG 91 (116)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~g 91 (116)
.+++++++++..+... ...++. .........+.|.+ .++ .|.+..+.........++..++.++.++++||+|
T Consensus 249 ~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~ 323 (438)
T 3o7q_A 249 ASLSRLARIRHWRWAV----LAQFCY-VGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFA 323 (438)
T ss_dssp HHHHHHTTCSHHHHHH----HHHHHH-HHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hhHHHHHhChHHHHHH----HHHHHH-HHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3466777766444322 111222 22223344455555 555 5999988888899999999999999999999999
Q ss_pred chhHHhhhhHHHHHHHHHH
Q psy17792 92 RRTLHLYGLGGMFIFSIFI 110 (116)
Q Consensus 92 rr~~~~~~~~~~~~~~~~~ 110 (116)
||+++..+.++..+..+.+
T Consensus 324 ~~~~~~~~~~~~~~~~~~~ 342 (438)
T 3o7q_A 324 PHKVLAAYALIAMALCLIS 342 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 9999888777666555443
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.00 E-value=3.6e-09 Score=70.25 Aligned_cols=84 Identities=14% Similarity=0.084 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhhchhhhHHhHHHHHhh-----cCCCcchhHHHHHHHHHHHHHHHHHHHHhhhc-ccchhHHhhhhHH
Q psy17792 29 LIIGIVMQLSQQFSGINAVFYYSTALFES-----SGLSEKTAKFTTIGIGAVMVTMTIISIPLMDR-MGRRTLHLYGLGG 102 (116)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr-~grr~~~~~~~~~ 102 (116)
........++.....+....+..+++.++ +|.+..+..+......++..++.++.|+++|| +|||+++..+.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~ 94 (491)
T 4aps_A 15 LSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVL 94 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 33333444444444444445555666666 89999999999999999999999999999999 8999999998888
Q ss_pred HHHHHHHHHH
Q psy17792 103 MFIFSIFITI 112 (116)
Q Consensus 103 ~~~~~~~~~~ 112 (116)
..+..+..+.
T Consensus 95 ~~~~~~~~~~ 104 (491)
T 4aps_A 95 IMLGHIVLAL 104 (491)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHHH
Confidence 7777665543
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.93 E-value=6e-09 Score=69.74 Aligned_cols=77 Identities=16% Similarity=0.049 Sum_probs=59.1
Q ss_pred HHHHHhhchhhhHHhHHHHHhhcC------CCcchhHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHhhhhHHHHHHHH
Q psy17792 36 QLSQQFSGINAVFYYSTALFESSG------LSEKTAKFTTIGIGAVMVTMTIISIPLMDRM-GRRTLHLYGLGGMFIFSI 108 (116)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~~ 108 (116)
.++.....+....+..+++.+++| .+..+..+......++..++.++.|+++||+ |||+++..+.++..+..+
T Consensus 21 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~ 100 (524)
T 2xut_A 21 EACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHA 100 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 334344443444555556667788 8999999999999999999999999999999 999999888877776665
Q ss_pred HHHH
Q psy17792 109 FITI 112 (116)
Q Consensus 109 ~~~~ 112 (116)
..+.
T Consensus 101 ~~~~ 104 (524)
T 2xut_A 101 FLAI 104 (524)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 7
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.92 E-value=9.6e-09 Score=66.05 Aligned_cols=71 Identities=13% Similarity=0.121 Sum_probs=58.9
Q ss_pred hchhhhHHhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHHH
Q psy17792 42 SGINAVFYYSTALFESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFITI 112 (116)
Q Consensus 42 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~~ 112 (116)
..........|.+.+++|.+..+..+......+...++.++.|+++||+|||+++..+.....+.......
T Consensus 14 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 84 (375)
T 2gfp_A 14 MAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVT 84 (375)
T ss_dssp HHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH
Confidence 33445556678888899999999999999999999999999999999999999999888777766655543
No 8
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.89 E-value=5e-09 Score=68.61 Aligned_cols=58 Identities=19% Similarity=0.249 Sum_probs=47.3
Q ss_pred hhHHhHHHHH-hhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHH
Q psy17792 46 AVFYYSTALF-ESSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGM 103 (116)
Q Consensus 46 ~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~ 103 (116)
....+.|..+ ++.|.+..+.+.......++..++.++.|+++||+|||++++.+..+.
T Consensus 25 ~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~ 83 (417)
T 2cfq_A 25 AYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGM 83 (417)
T ss_dssp HHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3334455544 558999999999999999999999999999999999999988766544
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.87 E-value=1.8e-08 Score=66.03 Aligned_cols=64 Identities=8% Similarity=0.044 Sum_probs=51.1
Q ss_pred hhchhhhHHhHHHHHhh-cCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcc--cchhHHhhhhHHHH
Q psy17792 41 FSGINAVFYYSTALFES-SGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRM--GRRTLHLYGLGGMF 104 (116)
Q Consensus 41 ~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~--grr~~~~~~~~~~~ 104 (116)
.........+.|.+.++ .|.+..+.........++..++.++.+++.||+ |||+.+..+..+..
T Consensus 265 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 331 (451)
T 1pw4_A 265 YLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331 (451)
T ss_dssp HHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 33444556667777766 899998888888999999999999999999999 99998876655544
No 10
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.73 E-value=3.6e-08 Score=65.39 Aligned_cols=47 Identities=15% Similarity=-0.000 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHHHHH
Q psy17792 65 AKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSIFIT 111 (116)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~~~~ 111 (116)
.++......++..+|++++|+++||+|||+++..+.++..++.+..+
T Consensus 57 ~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a 103 (491)
T 4gc0_A 57 LGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSA 103 (491)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 34566677888999999999999999999999998888777766554
No 11
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.46 E-value=1.2e-07 Score=62.05 Aligned_cols=43 Identities=14% Similarity=0.124 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHHHHHHH
Q psy17792 66 KFTTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGMFIFSI 108 (116)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~~~~~~ 108 (116)
........+...++.++.++++||+|||+++..+..+.++...
T Consensus 262 g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~ 304 (417)
T 2cfq_A 262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRII 304 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHH
Confidence 4455556677788899999999999999988877666555443
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=97.83 E-value=1.9e-06 Score=55.33 Aligned_cols=75 Identities=20% Similarity=0.084 Sum_probs=47.8
Q ss_pred chhhhhhccccchHHHHHHHHHHHHHHhhchhhhHHhHHHHHhh-cCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy17792 14 ISMSELLCSSTLRKPLIIGIVMQLSQQFSGINAVFYYSTALFES-SGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGR 92 (116)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~gr 92 (116)
.++++.++++..+. ..+..+...........+.|.+.++ .|.+..+.........++..++.++.+++.||.||
T Consensus 190 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~ 264 (375)
T 2gfp_A 190 TSYKTLFGNSGFNC-----YLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST 264 (375)
T ss_dssp TCSTHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHHhcCcchHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666543332 1112222222333444455555544 78887788888888889999999999999999987
Q ss_pred h
Q psy17792 93 R 93 (116)
Q Consensus 93 r 93 (116)
+
T Consensus 265 ~ 265 (375)
T 2gfp_A 265 L 265 (375)
T ss_dssp H
T ss_pred H
Confidence 4
No 13
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=97.62 E-value=0.00014 Score=48.17 Aligned_cols=49 Identities=6% Similarity=-0.190 Sum_probs=33.6
Q ss_pred HhHHHHHh-hcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccchhHHh
Q psy17792 49 YYSTALFE-SSGLSEKTAKFTTIGIGAVMVTMTIISIPLMDRMGRRTLHL 97 (116)
Q Consensus 49 ~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~~~ 97 (116)
.+.|.+.+ ..+.+..+.........+...++.++.+++.||+|||+...
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~ 353 (491)
T 4aps_A 304 VVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSS 353 (491)
T ss_dssp THHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---C
T ss_pred HHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCc
Confidence 33444444 45666455666677778888889999999999999986554
No 14
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=87.45 E-value=0.27 Score=18.34 Aligned_cols=14 Identities=21% Similarity=0.562 Sum_probs=11.2
Q ss_pred HHHHhhhcccchhH
Q psy17792 82 ISIPLMDRMGRRTL 95 (116)
Q Consensus 82 ~~~~l~dr~grr~~ 95 (116)
++|.+..++|||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 36788999999864
No 15
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=79.37 E-value=2.8 Score=17.95 Aligned_cols=27 Identities=11% Similarity=0.097 Sum_probs=16.0
Q ss_pred hcccchhHHhhhhHHHHHHHHHHHHHH
Q psy17792 88 DRMGRRTLHLYGLGGMFIFSIFITISL 114 (116)
Q Consensus 88 dr~grr~~~~~~~~~~~~~~~~~~~~~ 114 (116)
|--||-+..+++.+........+++.+
T Consensus 3 ~~tGRiPLWlvgtv~G~~vi~~~giFf 29 (40)
T 3arc_J 3 SEGGRIPLWIVATVAGMGVIVIVGLFF 29 (40)
T ss_dssp CCTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCcccEEeeeeehhhhhhheeeEEE
Confidence 445777777776655554444555544
No 16
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=62.39 E-value=31 Score=22.88 Aligned_cols=36 Identities=11% Similarity=-0.132 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccchhHHhhhhHHH
Q psy17792 68 TTIGIGAVMVTMTIISIPLMDRMGRRTLHLYGLGGM 103 (116)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~l~dr~grr~~~~~~~~~~ 103 (116)
......++..++..+.+++.|..|.|..+.......
T Consensus 153 ~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~ 188 (524)
T 2xut_A 153 FYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLM 188 (524)
T ss_dssp HHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 556667788888889999999999887766544443
No 17
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=59.27 E-value=26 Score=20.87 Aligned_cols=24 Identities=4% Similarity=-0.017 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcccch
Q psy17792 70 IGIGAVMVTMTIISIPLMDRMGRR 93 (116)
Q Consensus 70 ~~~~~~~~~~~~~~~~l~dr~grr 93 (116)
..+-++..+++.+.|++.||..++
T Consensus 100 gGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 100 GGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hHHHHHHHHHHHHHHHHHHHcccc
Confidence 344566677888899999987644
No 18
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=48.21 E-value=14 Score=14.72 Aligned_cols=17 Identities=18% Similarity=0.014 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHhhhc
Q psy17792 73 GAVMVTMTIISIPLMDR 89 (116)
Q Consensus 73 ~~~~~~~~~~~~~l~dr 89 (116)
.+.+++.+++.-|+.||
T Consensus 11 visGcivalF~hWL~~r 27 (30)
T 4b19_A 11 VISGCAIAFFSYWLSRR 27 (30)
T ss_dssp THHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 35567777788888876
No 19
>2jpj_A Bacteriocin lactococcin-G subunit alpha; peptide, anti-microbial, membrane bound, antimicrobial protein; NMR {Lactococcus lactis} PDB: 2jpl_A
Probab=37.06 E-value=11 Score=15.61 Aligned_cols=9 Identities=22% Similarity=0.494 Sum_probs=5.6
Q ss_pred hhhcccchh
Q psy17792 86 LMDRMGRRT 94 (116)
Q Consensus 86 l~dr~grr~ 94 (116)
.+||+.||+
T Consensus 29 qa~rinrkk 37 (39)
T 2jpj_A 29 QASRINRKK 37 (39)
T ss_dssp HHHHHHGGG
T ss_pred HHHHhhhhc
Confidence 456777665
No 20
>1cmk_I CAMP-dependent protein kinase inhibitor, alpha form; phosphotransferase; HET: TPO SEP MYR; 2.90A {Homo sapiens}
Probab=36.20 E-value=8.3 Score=14.85 Aligned_cols=10 Identities=40% Similarity=0.531 Sum_probs=7.4
Q ss_pred hhcccchhHH
Q psy17792 87 MDRMGRRTLH 96 (116)
Q Consensus 87 ~dr~grr~~~ 96 (116)
+||-|||..+
T Consensus 9 ~~RtGRRNAl 18 (26)
T 1cmk_I 9 SGRTGRRNAI 18 (26)
T ss_pred cCcccccccc
Confidence 5888988643
No 21
>2ksf_A Sensor protein KDPD; methods development, histidine kinase receptor, membrane domain, four-helical bundle, cell-free synthesis, ATP- binding; NMR {Escherichia coli}
Probab=23.00 E-value=82 Score=16.47 Aligned_cols=23 Identities=22% Similarity=0.086 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHhhhcccch
Q psy17792 71 GIGAVMVTMTIISIPLMDRMGRR 93 (116)
Q Consensus 71 ~~~~~~~~~~~~~~~l~dr~grr 93 (116)
...+...+.+++.+.+.+|..|+
T Consensus 84 vt~~v~l~val~~s~L~~~~r~q 106 (107)
T 2ksf_A 84 LTFAVMLTVGLVIGNLTAGVRYQ 106 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445566666777777777664
Done!