RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy17792
         (116 letters)



>3ehu_C Corticoliberin; G protein-coupled receptor, corticotropin
          releasing factor, fold, MBP fusion, extracellular
          domain, sugar transport; HET: BTB MAL; 1.96A
          {Escherichia coli}
          Length = 26

 Score = 24.0 bits (51), Expect = 2.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query: 2  RVEQIAQQSESKISMSELL 20
          R EQ+AQQ+ S   + E++
Sbjct: 2  RAEQLAQQAHSNRKLMEII 20


>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic
           biosynthesis, condensatio domain, peptide bond
           formation, ligase; 1.85A {Brevibacillus brevis}
          Length = 520

 Score = 25.6 bits (57), Expect = 4.8
 Identities = 5/24 (20%), Positives = 10/24 (41%)

Query: 35  MQLSQQFSGINAVFYYSTALFESS 58
              +++   +     YST+LF   
Sbjct: 467 FSATEEREEMTIGVEYSTSLFTRE 490


>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller,
           endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP:
           i.23.1.1 PDB: 1xi5_A 3iyv_A
          Length = 1630

 Score = 25.4 bits (55), Expect = 6.2
 Identities = 8/38 (21%), Positives = 14/38 (36%)

Query: 25  LRKPLIIGIVMQLSQQFSGINAVFYYSTALFESSGLSE 62
           LR P  I     +  Q    + +  Y   L +   L++
Sbjct: 392 LRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQGQLNK 429


>3d7i_A Carboxymuconolactone decarboxylase family protein; 1591455,
          structural genomics, JOI for structural genomics, JCSG;
          HET: MSE PG4; 1.75A {Methanocaldococcus jannaschii}
          Length = 105

 Score = 24.3 bits (53), Expect = 8.2
 Identities = 9/33 (27%), Positives = 13/33 (39%)

Query: 44 INAVFYYSTALFESSGLSEKTAKFTTIGIGAVM 76
           + +   +  +F    L  KT K   IGI A  
Sbjct: 23 YDIIVKLNDTVFTGKTLDYKTQKLIAIGIVASR 55


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.327    0.138    0.373 

Gapped
Lambda     K      H
   0.267   0.0725    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,594,623
Number of extensions: 81605
Number of successful extensions: 221
Number of sequences better than 10.0: 1
Number of HSP's gapped: 221
Number of HSP's successfully gapped: 19
Length of query: 116
Length of database: 6,701,793
Length adjustment: 79
Effective length of query: 37
Effective length of database: 4,496,034
Effective search space: 166353258
Effective search space used: 166353258
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.4 bits)