BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17793
(397 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|193582508|ref|XP_001950228.1| PREDICTED: putative methyltransferase NSUN6-like [Acyrthosiphon
pisum]
Length = 447
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 112/277 (40%), Positives = 174/277 (62%), Gaps = 24/277 (8%)
Query: 40 DILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQ-KVLDMCAAPGN 98
D+ +G+AVE+T+ + +P+ L + G+LQNLPS++ GH LDV KVLDMCAAPGN
Sbjct: 189 DMNPKGIAVEMTDPATGIPSFTLPNEYGMLQNLPSVVTGHALDVNENNLKVLDMCAAPGN 248
Query: 99 KLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDS-TRINTSSQIDIE 157
K THIA+LMN+ G++ A+DKSK ++ K+E K + +++ H +DS ++ ++ + +
Sbjct: 249 KTTHIAILMNNKGSIDAVDKSKTKLNKVELRCKHFGIQNVKIHHFDSLVSVDLNNINNSD 308
Query: 158 RMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKI-KSYANIQKKLLQAVYRFVS 216
R + ESFDR+LLDAPCS GQRP+ + +DK + K + +Q+KLL
Sbjct: 309 RPPFKNESFDRVLLDAPCSNLGQRPLLK-----IEVDKNVLKRFPALQRKLL-------- 355
Query: 217 LFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKD 276
I L+K GILVY TC++++EENE +AW+L + P++EL+ ++G G+A +D
Sbjct: 356 ---INAINLVKPGGILVYSTCTITLEENEHNVAWVLEKFPQMELIAINSEIGSPGIATQD 412
Query: 277 -LEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKK 312
L + ++RFG P + D+IGFFI K +K+
Sbjct: 413 GLNKDLCEFVRRFG----PENAEEDSIGFFISKFQKR 445
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 319 IYIHPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFAPGVLAM 372
+ +H HL+DCIVI P+ K + ++IVD +VLRG+ +FAPG++AM
Sbjct: 84 VRVHKHLSDCIVISPMDKSLLDLSPKKEEVIVDIATGQSVLRGSHIFAPGIMAM 137
>gi|198464825|ref|XP_001353377.2| GA10764 [Drosophila pseudoobscura pseudoobscura]
gi|198149898|gb|EAL30884.2| GA10764 [Drosophila pseudoobscura pseudoobscura]
Length = 438
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 118/270 (43%), Positives = 159/270 (58%), Gaps = 23/270 (8%)
Query: 45 GVAVEITNVLSQVPNVA-LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHI 103
G+AVE+ + +S VP++ L S+ +LQNLPSI+ LD QPG+++LDMCAAPGNK THI
Sbjct: 188 GIAVEMQSNVSGVPSLGDLSSADALLQNLPSIVCVRVLDPQPGERILDMCAAPGNKTTHI 247
Query: 104 ALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR-INTSSQIDIERM-KL 161
A LM D G ++ALD S RV + + SIQ HV+DST+ + SS
Sbjct: 248 AELMGDQGCVVALDNSASRVRGMLGKLGN-NYRSIQAHVFDSTKAVAASSDSSCPSAPPF 306
Query: 162 QKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQ 221
SFDRILLDAPCSG G RP + K +KSY NIQ++LL Q
Sbjct: 307 PCASFDRILLDAPCSGLGNRPQLL---CNIKQAKILKSYPNIQRRLLA-----------Q 352
Query: 222 GIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAED 281
+ LL+ GILVY TC+++ E E+++AW L ++PE+ L+ P+ G GL DLE
Sbjct: 353 AVQLLRPGGILVYSTCTVTEAECESIVAWALRKYPELRLLDATPRYGGPGLPLPDLETAQ 412
Query: 282 QAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
++QRFGP + DT+GFFI K +K
Sbjct: 413 SKLLQRFGP-----GNDLDTVGFFIAKFQK 437
Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 315 EAPEIYIHPHLNDCIVIGPLLKLSQSVVHHPV--QIIVDQPCALAVLRGADVFAPGVLAM 372
+AP IY L + + I PL V P ++IVD C A+LRGA ++APGVLAM
Sbjct: 71 QAPRIYGLADLPEVLCIAPLEAELALSVPDPTLKEVIVDTSCGAALLRGAHIYAPGVLAM 130
>gi|195160569|ref|XP_002021148.1| GL24972 [Drosophila persimilis]
gi|194118261|gb|EDW40304.1| GL24972 [Drosophila persimilis]
Length = 438
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 118/270 (43%), Positives = 159/270 (58%), Gaps = 23/270 (8%)
Query: 45 GVAVEITNVLSQVPNVA-LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHI 103
G+AVE+ + +S VP++ L S+ +LQNLPSI+ LD QPG+++LDMCAAPGNK THI
Sbjct: 188 GIAVEMQSNVSGVPSLGDLSSADALLQNLPSIVCVRVLDPQPGERILDMCAAPGNKTTHI 247
Query: 104 ALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR-INTSSQIDIERM-KL 161
A LM D G ++ALD S RV + + SIQ HV+DST+ + SS
Sbjct: 248 AELMGDQGCVVALDNSASRVRGMLGKLGN-NYRSIQAHVFDSTKAVAASSDSSCPAAPPF 306
Query: 162 QKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQ 221
SFDRILLDAPCSG G RP + K +KSY NIQ++LL Q
Sbjct: 307 PCASFDRILLDAPCSGLGNRPQLL---CNIKQAKILKSYPNIQRRLLA-----------Q 352
Query: 222 GIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAED 281
+ LL+ GILVY TC+++ E E+++AW L ++PE+ L+ P+ G GL DLE
Sbjct: 353 AVQLLRPGGILVYSTCTVTEAECESIVAWALRKYPELRLLDATPRYGGPGLPLPDLETAQ 412
Query: 282 QAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
++QRFGP + DT+GFFI K +K
Sbjct: 413 SKLLQRFGP-----GNDLDTVGFFIAKFQK 437
Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 315 EAPEIYIHPHLNDCIVIGPLLKLSQSVVHHPV--QIIVDQPCALAVLRGADVFAPGVLAM 372
+AP IY L + + I PL V P ++IVD C A+LRGA ++APGVLAM
Sbjct: 71 QAPRIYGLADLPEVLCIAPLEAELALSVPDPTLKEVIVDTSCGAALLRGAHIYAPGVLAM 130
>gi|195496828|ref|XP_002095858.1| GE22645 [Drosophila yakuba]
gi|194181959|gb|EDW95570.1| GE22645 [Drosophila yakuba]
Length = 440
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 114/274 (41%), Positives = 158/274 (57%), Gaps = 26/274 (9%)
Query: 45 GVAVEITNVLSQVPNVA-LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHI 103
GVAVE+ + +S VP++ L S G+LQNLPSI+ LD QPG+++LDMCAAPGNK +HI
Sbjct: 186 GVAVEMQSTVSGVPSLGDLSSEDGLLQNLPSIVCVRVLDPQPGERILDMCAAPGNKTSHI 245
Query: 104 ALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR-----INTSSQIDIER 158
A L+ D G+++ALD S RV + +K + SI HV+DST+ ++ +
Sbjct: 246 AELIGDGGSVVALDNSASRVRSMLLKLKHYK--SITAHVFDSTKALAPEAPSAPFGEFTA 303
Query: 159 MKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLF 218
SFDRIL+DAPCSG G RP + + K + SY NIQ++L +
Sbjct: 304 PPFPCASFDRILIDAPCSGLGNRPQL---SCSIKQAKVLSSYPNIQRRLFE--------- 351
Query: 219 DWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLE 278
Q +PLL+ GILVY TC+++ +E E ++AW L + PE+ L P+ G GL
Sbjct: 352 --QAVPLLRPGGILVYSTCTVTEDECECIVAWALKKFPELHLTDATPRWGGSGLPLPGFA 409
Query: 279 AEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKK 312
++QRFG PT N DT+GFFI K KK
Sbjct: 410 TCKSRLLQRFG----PTGANADTVGFFIAKFHKK 439
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 45/68 (66%), Gaps = 3/68 (4%)
Query: 308 KLRKKYG-EAPEIYIHPHLNDCIVIGPL-LKLSQSVVHHPV-QIIVDQPCALAVLRGADV 364
KL +YG ++P +Y P++ + + I PL +L+++ + +I+VD C A+LRGA +
Sbjct: 61 KLAARYGVKSPRVYCLPNIPEMLCIDPLDSRLTKAHADSKLKEIMVDSSCGAALLRGAHI 120
Query: 365 FAPGVLAM 372
+APGVLAM
Sbjct: 121 YAPGVLAM 128
>gi|195019305|ref|XP_001984952.1| GH16775 [Drosophila grimshawi]
gi|193898434|gb|EDV97300.1| GH16775 [Drosophila grimshawi]
Length = 449
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 114/271 (42%), Positives = 159/271 (58%), Gaps = 20/271 (7%)
Query: 45 GVAVEITNVLSQVPNVA-LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHI 103
G+AV + +S VP + L + G+LQNLPSI+ L QPG+++LDMCAAPGNK TH+
Sbjct: 190 GIAVRMQRNISGVPTLGDLSDANGLLQNLPSIVCVRVLGPQPGERILDMCAAPGNKTTHM 249
Query: 104 ALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRI--NTSSQIDIERMKL 161
A LM D GT++ALD S R+ ++ K S I+TH +D+T+ +
Sbjct: 250 AELMGDVGTIVALDNSANRLRAMQS--KLANYSCIETHQFDATKAWHAAGNGPSSGPPPF 307
Query: 162 QKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQ 221
+SFDRILLDAPCSG G RP S + K ++SY +IQ+ L+ Q
Sbjct: 308 ASDSFDRILLDAPCSGLGNRPQLC---SNVKQAKVLQSYPHIQRNLMA-----------Q 353
Query: 222 GIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLA-HKDLEAE 280
+PLL+ GILVY TC+++ E E ++AW L + P++ L+ P+LG GL H +L AE
Sbjct: 354 AVPLLRPGGILVYSTCTITEAECEQLVAWTLRKFPQLRLMDATPKLGAPGLPLHPELSAE 413
Query: 281 DQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
A++QRFGP N DT+GFFI K +K
Sbjct: 414 QCALLQRFGPSAENRVPNLDTVGFFIAKFQK 444
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 3/68 (4%)
Query: 308 KLRKKYGE-APEIYIHPHLNDCIVIGPLLKLSQS--VVHHPVQIIVDQPCALAVLRGADV 364
KLR +YG+ AP +Y L + + I PL ++ V H Q+IVD C A+LRGA +
Sbjct: 62 KLRSQYGQKAPNVYGLDELPEMLCIAPLDVAAEDLPVDDHLKQVIVDTSCGAALLRGAHI 121
Query: 365 FAPGVLAM 372
FAPGVLAM
Sbjct: 122 FAPGVLAM 129
>gi|348503686|ref|XP_003439395.1| PREDICTED: LOW QUALITY PROTEIN: putative methyltransferase
NSUN6-like [Oreochromis niloticus]
Length = 474
Score = 201 bits (510), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 113/291 (38%), Positives = 166/291 (57%), Gaps = 29/291 (9%)
Query: 33 SIYCYALDILFRGVAVEITNVLSQVPNV-ALDSSMGILQNLPSILAGHYLDVQPGQKVLD 91
+I+C D RG+ + + L + P+ + S+ LQNLPS++ GH L +PG+++LD
Sbjct: 200 TIFCT--DEPARGIGIRMVEPLYRSPSFDGVLPSLVFLQNLPSVVVGHVLGPRPGERILD 257
Query: 92 MCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR-INT 150
MCAAPG K HIA LM D G ++ALD+ + ++ ++ + + L L S+Q H ++ST+ +++
Sbjct: 258 MCAAPGGKTCHIAALMGDQGEVVALDRIRNKIDRIRQNAQMLHLQSVQAHCFNSTQAVSS 317
Query: 151 SSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQA 210
+ E ESFDR+LLDAPCSG GQRP N S +L K+I SY +Q+KL A
Sbjct: 318 DPAQETEGPPFPPESFDRVLLDAPCSGLGQRP---NMGSTWSL-KEICSYQPLQRKLFHA 373
Query: 211 VYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMK 270
R LLKK G+LVY TC++++ ENE +AW L P + L P +G +
Sbjct: 374 AVR-----------LLKKGGVLVYSTCTVTLAENEEQVAWALDTFPCLSLQPQEPHIGAE 422
Query: 271 GLAHKDLEAEDQAVMQRFGPPL----------IPTDRNTDTIGFFICKLRK 311
G+ L E ++QRF P L +P ++DTIGFFI K K
Sbjct: 423 GMPGAGLPPEQLRLLQRFSPELSWEQTETTAPLPCRADSDTIGFFIAKFLK 473
>gi|317420025|emb|CBN82061.1| methyltransferase NSUN6 [Dicentrarchus labrax]
Length = 467
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 113/290 (38%), Positives = 162/290 (55%), Gaps = 27/290 (9%)
Query: 32 LSIYCYALDILFRGVAVEITNVLSQVPNV-ALDSSMGILQNLPSILAGHYLDVQPGQKVL 90
S++C D +G+ V + L Q P+ + S+ LQNLPS++ GH L +PG+++L
Sbjct: 194 FSLFCT--DKPAKGIGVRMVEPLYQSPSFDGVLPSLAFLQNLPSVVVGHVLGPRPGERIL 251
Query: 91 DMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINT 150
DMCAAPG K +HIA LM D G ++ALD+ + ++ ++ E + L L SI + ++ST+ +
Sbjct: 252 DMCAAPGGKTSHIAALMGDQGEVVALDRIRNKIDRIRENAQMLHLRSITAYCFNSTQAVS 311
Query: 151 SSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQA 210
S E ESFDR+LLDAPCSG GQRP N + L K+I SY +Q+KL A
Sbjct: 312 SDPAHTEGPPFPPESFDRVLLDAPCSGLGQRP---NMGTTWGL-KEICSYQPLQRKLFHA 367
Query: 211 VYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMK 270
R LLKK G+LVY TC++++ ENE +AW L P + L P +G +
Sbjct: 368 AVR-----------LLKKGGVLVYSTCTVTLAENEEQVAWALETFPCLTLQPQEPHIGAE 416
Query: 271 GLAHKDLEAEDQAVMQRFGPPL---------IPTDRNTDTIGFFICKLRK 311
G+ L E ++QRF P L + ++DTIGFFI K K
Sbjct: 417 GMLGAGLSPEQLRLLQRFSPELSWEQTGTTALSRRADSDTIGFFIAKFLK 466
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 10/64 (15%)
Query: 318 EIYIHPHLNDCIVI---GPLLKLSQSVVHHPVQ-----IIVDQPCALAVLRGADVFAPGV 369
+I HP + D +++ GP + ++ PV+ ++VD C AVLRGA VFAPG+
Sbjct: 90 QILPHPRIPDVLLLPVDGP--RYVRNAGATPVEPLSSEVVVDAQCGSAVLRGAHVFAPGI 147
Query: 370 LAMP 373
+A P
Sbjct: 148 VASP 151
>gi|195377779|ref|XP_002047665.1| GJ11797 [Drosophila virilis]
gi|194154823|gb|EDW70007.1| GJ11797 [Drosophila virilis]
Length = 413
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 111/269 (41%), Positives = 156/269 (57%), Gaps = 18/269 (6%)
Query: 45 GVAVEITNVLSQVPNVA-LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHI 103
G+AV + + +S VP + L + +LQNLPS++ L QPG+++LDMCAAPGNK THI
Sbjct: 159 GIAVRMQSNVSGVPTLGDLSDANALLQNLPSMVCVRVLAPQPGERILDMCAAPGNKTTHI 218
Query: 104 ALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRI-NTSSQIDIERMKLQ 162
A LM D G +IALD S R+ ++ + IQ H +D+T+ N S ID
Sbjct: 219 AELMGDVGQIIALDNSASRMRAMQTKLGNY--DCIQAHQFDATKAWNEHSAIDSTAPPFA 276
Query: 163 KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQG 222
SFDRILLDAPCSG G RP + + K ++SY IQ+ LL Q
Sbjct: 277 SSSFDRILLDAPCSGLGNRPQLCCS---IKQTKVLQSYPPIQRSLLA-----------QA 322
Query: 223 IPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQ 282
+PLL+ G+LVY TC+++ E E +++W L + P+++LV P+LG GL +L A
Sbjct: 323 VPLLRPGGVLVYSTCTITEAECEQLVSWALRKFPQLQLVDATPKLGAPGLPLPELNAAQC 382
Query: 283 AVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
++QRFGP +N DT+GFFI K +K
Sbjct: 383 ELLQRFGPTNENRVQNLDTVGFFIAKFQK 411
>gi|195127777|ref|XP_002008344.1| GI13435 [Drosophila mojavensis]
gi|193919953|gb|EDW18820.1| GI13435 [Drosophila mojavensis]
Length = 443
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 113/270 (41%), Positives = 158/270 (58%), Gaps = 18/270 (6%)
Query: 45 GVAVEITNVLSQVPNVA-LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHI 103
G+AV + +S VP + L +LQNLPS++ LD QPG+++LDMCAAPGNK TH+
Sbjct: 186 GIAVRMQTNVSGVPTLGDLSDEDALLQNLPSMVCVRVLDPQPGERILDMCAAPGNKTTHM 245
Query: 104 ALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRI-NTSSQIDIERMKLQ 162
A LM + GT+IALD S RV + E K + I H +D+T+ + +S +D
Sbjct: 246 AELMCNRGTIIALDNSASRVRSMTE--KLANYTCITAHQFDATKAWDDNSDLDSIAPPFA 303
Query: 163 KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQG 222
SFDRILLDAPCSG G RP + K ++SY +IQ+ +L Q
Sbjct: 304 SGSFDRILLDAPCSGLGNRPQLC---CNIKQPKVLQSYPHIQRNILS-----------QA 349
Query: 223 IPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQ 282
+PLL+ GILVY TC+++ E E +++W L ++ E++LV P+LG GL LEA
Sbjct: 350 VPLLRPGGILVYSTCTVTEAECEEIVSWALRKYTELQLVDATPKLGAPGLPLPGLEAAQC 409
Query: 283 AVMQRFGPPLIPTDRNTDTIGFFICKLRKK 312
++QRFGP +N DT+GFFI K +KK
Sbjct: 410 DLLQRFGPSRENRMQNLDTVGFFIAKFQKK 439
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 308 KLRKKYGE-APEIYIHPHLNDCIVIGPLLKLSQSVVHH-PVQIIVDQPCALAVLRGADVF 365
KL YG AP +Y + + + I PL + + ++IVD C AVLRGA ++
Sbjct: 62 KLSALYGSSAPLVYGLKEIPEMLCISPLDTTTDNKYDDCRKELIVDTSCGAAVLRGAHIY 121
Query: 366 APGVLAMPLG 375
APGVLAM G
Sbjct: 122 APGVLAMESG 131
>gi|410909259|ref|XP_003968108.1| PREDICTED: putative methyltransferase NSUN6-like [Takifugu
rubripes]
Length = 471
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 115/291 (39%), Positives = 167/291 (57%), Gaps = 29/291 (9%)
Query: 33 SIYCYALDILFRGVAVEITNVLSQVPNV-ALDSSMGILQNLPSILAGHYLDVQPGQKVLD 91
S++C D +GV V++ L Q P+ + S+ LQNLPS++AGH L +PG++VLD
Sbjct: 197 SLFCS--DEPVKGVGVQMVEPLYQSPSFDGVLPSLVFLQNLPSVVAGHVLGPRPGERVLD 254
Query: 92 MCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR-INT 150
MCAAPG K HIA+LM D G ++ALD+ + ++ ++ E + LQL SI+ ++ST+ ++
Sbjct: 255 MCAAPGGKTCHIAVLMGDQGKVVALDRIRNKIDRILENAQALQLRSIKAFCFNSTQAVSG 314
Query: 151 SSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQA 210
+ E ESFDR+LLDAPCSG GQRP N + +L K+I SY +Q+KL QA
Sbjct: 315 DAAPQAEEPPYPPESFDRVLLDAPCSGLGQRP---NMGTTWSL-KEICSYQPLQRKLFQA 370
Query: 211 VYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMK 270
+ LLK+ G+LVY TC++++ ENE +AW L P + L P +G +
Sbjct: 371 AVK-----------LLKRGGVLVYSTCTVTLAENEEQVAWALRTFPCLSLQPQEPHIGSE 419
Query: 271 GLAHKDLEAEDQAVMQRFGPPL----------IPTDRNTDTIGFFICKLRK 311
G+ L E ++QRF P L + + DTIGFFI K K
Sbjct: 420 GMLGAGLSPEQLRLLQRFRPELSWDQTGTAAPLSCRADRDTIGFFIAKFLK 470
>gi|149412200|ref|XP_001509484.1| PREDICTED: putative methyltransferase NSUN6 [Ornithorhynchus
anatinus]
Length = 466
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 109/257 (42%), Positives = 148/257 (57%), Gaps = 22/257 (8%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
LQNLPS +A H L QPG+++LDMCAAPG K THIA LM D G +IALDK +V K++
Sbjct: 217 FLQNLPSAVASHVLGPQPGERILDMCAAPGGKTTHIAALMEDRGEVIALDKIANKVEKIK 276
Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDIERMK--LQKESFDRILLDAPCSGFGQRPMFY 185
+T K LQL+ I+ YD T+ + + R + E+FDRILLDAPCSG GQRP
Sbjct: 277 QTAKLLQLNCIKAFCYDGTKALAQGKTEAGRGEPPFPPETFDRILLDAPCSGLGQRP--- 333
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
N L K++ SY +Q++LL + LLK G+LVY TC++++ ENE
Sbjct: 334 NMACTWTL-KEVTSYPPLQRRLLAVA-----------VELLKPGGVLVYSTCTVTLAENE 381
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTD-----RNTD 300
+AW L P ++L+ P LG +G+A L E + +QRF P +P + N D
Sbjct: 382 EQVAWALDTFPCLQLLPQEPHLGDEGMAGAGLSQEQRHRLQRFDPAAVPAEGPIRRANQD 441
Query: 301 TIGFFICKLRKKYGEAP 317
IGFFI K+ +P
Sbjct: 442 CIGFFIASFAKRRTASP 458
Score = 45.1 bits (105), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 10/116 (8%)
Query: 269 MKGLAHKDLEAEDQAVMQRFG-PPLIPTDR------NTDTIGFFICK-LRKKY-GEAPEI 319
+ + + EA +A+++R PP T R + + +C+ ++K++ G + +
Sbjct: 27 ITAVGRQAAEARFEALLKRLSHPPAFTTVRVNTRLASVQQVKSLLCEEIQKQFQGLSVPV 86
Query: 320 YIHPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFAPGVLAMPLG 375
HP L D ++I P++ + V P++ IV C AVLRGA ++ PG+LA G
Sbjct: 87 LQHPRLPDLLLI-PVIGPRKDVEEWPIRAIVGAQCGNAVLRGAHIYVPGILAASGG 141
>gi|194876441|ref|XP_001973776.1| GG16283 [Drosophila erecta]
gi|190655559|gb|EDV52802.1| GG16283 [Drosophila erecta]
Length = 439
Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 114/274 (41%), Positives = 158/274 (57%), Gaps = 26/274 (9%)
Query: 45 GVAVEITNVLSQVPNVA-LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHI 103
GVAVE+ + +S VP++ L G+LQNLPSI+ LD QPG+++LDMCAAPGNK +HI
Sbjct: 185 GVAVEMQSNVSGVPSLGDLSCEDGLLQNLPSIVCVRVLDPQPGERILDMCAAPGNKTSHI 244
Query: 104 ALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRI----NTSSQI-DIER 158
A LM D G+++ALD S RV + + + SI+THV+DST+ S+ I +
Sbjct: 245 AELMGDWGSVVALDNSASRVRSMLPKLGNYK--SIKTHVFDSTKAVAPDAPSAPIGEFTG 302
Query: 159 MKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLF 218
SFDRILLDAPCSG G RP + + K + SY NIQ++L +
Sbjct: 303 PPFPCASFDRILLDAPCSGLGNRPQL---SCSIKQAKILSSYPNIQRRLFE--------- 350
Query: 219 DWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLE 278
Q + LL+ GILVY TC+++ +E E ++AW L + E+ L P+ G GL E
Sbjct: 351 --QAVQLLRPGGILVYSTCTVTEDECECLVAWALEKFSELHLTDATPRWGGSGLPLPGFE 408
Query: 279 AEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKK 312
++QRFG P + DT+GFFI K +KK
Sbjct: 409 KCKSRLLQRFG----PNGASADTVGFFIAKFQKK 438
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 45/68 (66%), Gaps = 3/68 (4%)
Query: 308 KLRKKYG-EAPEIYIHPHLNDCIVIGPL-LKLSQSVVHHPV-QIIVDQPCALAVLRGADV 364
KL +YG ++P +Y P+L + + I PL +L+++ + +I+VD C A+LRGA +
Sbjct: 61 KLAARYGIKSPRVYCLPNLPEMLCIDPLESQLTKAHADSELKEIMVDTNCGAALLRGAHI 120
Query: 365 FAPGVLAM 372
+APGVLAM
Sbjct: 121 YAPGVLAM 128
>gi|194752568|ref|XP_001958593.1| GF11004 [Drosophila ananassae]
gi|190625875|gb|EDV41399.1| GF11004 [Drosophila ananassae]
Length = 441
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 109/248 (43%), Positives = 146/248 (58%), Gaps = 18/248 (7%)
Query: 45 GVAVEITNVLSQV-PNVA-LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTH 102
GVAVE+ + +S V P + L + +LQNLPSI+ LD QPG+ VLDMCAAPGNK TH
Sbjct: 185 GVAVEMLSTISDVVPGLGNLSCADALLQNLPSIVCVRVLDPQPGENVLDMCAAPGNKTTH 244
Query: 103 IALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ 162
IA LM D G ++ALD SK RV+ + + + SIQ HV+DST+ + I
Sbjct: 245 IAELMGDQGCVMALDNSKSRVSTMRSKLNNYR--SIQLHVFDSTKAVDALATSISVPPFP 302
Query: 163 KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQG 222
SFDRILLDAPCSG G RP S + K ++SY NIQ++L Q
Sbjct: 303 CASFDRILLDAPCSGLGNRPQLA---SKIKQPKVLQSYPNIQRRLFT-----------QA 348
Query: 223 IPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQ 282
+ LL+ G LVY TC+++ E E ++AW L + P++ LV P+ G GL +DL+A
Sbjct: 349 VQLLRDGGTLVYSTCTVTEPECEGIVAWALKKFPDLRLVDATPRWGGPGLPLEDLDASQS 408
Query: 283 AVMQRFGP 290
++QRFGP
Sbjct: 409 LMLQRFGP 416
Score = 45.1 bits (105), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 309 LRKKYG-EAPEIYIHPHLNDCIVIGPLLKLSQSVVHHPV--QIIVDQPCALAVLRGADVF 365
L +YG +AP++Y L + + I PL + P ++IVD C A+LRGA ++
Sbjct: 62 LVTRYGRDAPKVYGLNSLPEVLCIDPLDSNRLNYDPDPTLKEVIVDSTCGAALLRGAHIY 121
Query: 366 APGVLAM 372
APGVLAM
Sbjct: 122 APGVLAM 128
>gi|260783662|ref|XP_002586892.1| hypothetical protein BRAFLDRAFT_116066 [Branchiostoma floridae]
gi|229272021|gb|EEN42903.1| hypothetical protein BRAFLDRAFT_116066 [Branchiostoma floridae]
Length = 471
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 113/283 (39%), Positives = 160/283 (56%), Gaps = 33/283 (11%)
Query: 45 GVAVEITNVLSQVP--NVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTH 102
G+ VE+T+ L P N + S+ LQNLPS +AGH LD QPG++VLDMCAAPG K TH
Sbjct: 205 GIGVEMTSPLYGCPPLNDVMSDSI-FLQNLPSTVAGHVLDPQPGERVLDMCAAPGGKTTH 263
Query: 103 IALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQI------DI 156
+A LMN+ GT+IA DKS+ +V K+ ++L L+ IQ +++D + + + + +
Sbjct: 264 LATLMNNQGTVIAFDKSQGKVDKVMANARRLGLTCIQAYMFDGGKSASEAAVCEKDETSL 323
Query: 157 ERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVS 216
+FDR+L+DAPCS GQRP N K +KSY + Q++L A
Sbjct: 324 GAPPYPPNTFDRVLVDAPCSALGQRPALGNKMKL----KTLKSYPSYQRRLFPAA----- 374
Query: 217 LFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKD 276
+ +LK LVY TC+L++EENE + W+L+ P +ELV P LG GL+
Sbjct: 375 ------VQVLKTGCTLVYSTCTLTLEENEGQVEWLLNTFPCLELVPQTPYLGGPGLSGTS 428
Query: 277 LEAEDQAVMQRFGP-------PLIPTDRNTDTIGFFICKLRKK 312
L + ++QRF P P+DR DTIGFFI K K+
Sbjct: 429 LTQDQLQMLQRFEPWGDNRGENSHPSDR--DTIGFFIAKFIKR 469
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 311 KKYGEAPEIYIHPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFAPGVL 370
KK P + HP L+D ++I P ++ HH +I+VD C A+LRGA +FAPGVL
Sbjct: 88 KKAAPCPPVEPHPVLSDVLLI-PTTGPHPNLQHHTKEIMVDIYCGAAILRGAHIFAPGVL 146
Query: 371 A 371
Sbjct: 147 G 147
>gi|432928676|ref|XP_004081173.1| PREDICTED: putative methyltransferase NSUN6-like isoform 2 [Oryzias
latipes]
Length = 466
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 110/292 (37%), Positives = 160/292 (54%), Gaps = 29/292 (9%)
Query: 33 SIYCYALDILFRGVAVEITNVLSQVPNV-ALDSSMGILQNLPSILAGHYLDVQPGQKVLD 91
SI+C D RGV V + L + P+ + S+ LQN PS++ GH L +PG+++LD
Sbjct: 192 SIFCT--DEHPRGVGVRMVEPLYRSPSFDGVLPSLAFLQNFPSVVVGHVLGPRPGERILD 249
Query: 92 MCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR-INT 150
MCAAPG K HIA LM D G ++ALD+ + ++ ++ + + LQL SI+ + ++ + +++
Sbjct: 250 MCAAPGGKTCHIAALMGDQGEVVALDRIRNKIARIRQNAETLQLQSIKAYCFNGIQAVSS 309
Query: 151 SSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQA 210
+ ESFDR+LLDAPCSG GQRP + S K+I SY +Q+KL A
Sbjct: 310 DLTQQTQGPPFPPESFDRVLLDAPCSGLGQRPTMASTWSL----KEICSYPPLQRKLFHA 365
Query: 211 VYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMK 270
R LLKK G+LVY TC++++ ENE +AW L P + L Q P +G +
Sbjct: 366 AVR-----------LLKKGGVLVYSTCTVTLAENEEQVAWALSSFPCLTLQQQEPHIGAE 414
Query: 271 GLAHKDLEAEDQAVMQRFGPPL----------IPTDRNTDTIGFFICKLRKK 312
G+ L E ++QRF P L + + DTIGFFI K K
Sbjct: 415 GMLGAGLSCEQLRLLQRFSPELSWDQTDASVPLQCRADRDTIGFFIAKFLKS 466
>gi|432928674|ref|XP_004081172.1| PREDICTED: putative methyltransferase NSUN6-like isoform 1 [Oryzias
latipes]
Length = 459
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 110/292 (37%), Positives = 160/292 (54%), Gaps = 29/292 (9%)
Query: 33 SIYCYALDILFRGVAVEITNVLSQVPNV-ALDSSMGILQNLPSILAGHYLDVQPGQKVLD 91
SI+C D RGV V + L + P+ + S+ LQN PS++ GH L +PG+++LD
Sbjct: 185 SIFCT--DEHPRGVGVRMVEPLYRSPSFDGVLPSLAFLQNFPSVVVGHVLGPRPGERILD 242
Query: 92 MCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR-INT 150
MCAAPG K HIA LM D G ++ALD+ + ++ ++ + + LQL SI+ + ++ + +++
Sbjct: 243 MCAAPGGKTCHIAALMGDQGEVVALDRIRNKIARIRQNAETLQLQSIKAYCFNGIQAVSS 302
Query: 151 SSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQA 210
+ ESFDR+LLDAPCSG GQRP + S K+I SY +Q+KL A
Sbjct: 303 DLTQQTQGPPFPPESFDRVLLDAPCSGLGQRPTMASTWSL----KEICSYPPLQRKLFHA 358
Query: 211 VYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMK 270
R LLKK G+LVY TC++++ ENE +AW L P + L Q P +G +
Sbjct: 359 AVR-----------LLKKGGVLVYSTCTVTLAENEEQVAWALSSFPCLTLQQQEPHIGAE 407
Query: 271 GLAHKDLEAEDQAVMQRFGPPL----------IPTDRNTDTIGFFICKLRKK 312
G+ L E ++QRF P L + + DTIGFFI K K
Sbjct: 408 GMLGAGLSCEQLRLLQRFSPELSWDQTDASVPLQCRADRDTIGFFIAKFLKS 459
Score = 38.1 bits (87), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 8/59 (13%)
Query: 318 EIYIHPHLNDCIVI---GPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFAPGVLAMP 373
+I HP + D +++ GP + V +++V C AVLRGA VFAPG++A P
Sbjct: 88 QILSHPQVPDVLLLPVDGP-----RRVEQLSSEVVVGAQCGNAVLRGAHVFAPGIVASP 141
>gi|21356513|ref|NP_649425.1| CG11109, isoform A [Drosophila melanogaster]
gi|7296593|gb|AAF51875.1| CG11109, isoform A [Drosophila melanogaster]
gi|16768466|gb|AAL28452.1| GM05221p [Drosophila melanogaster]
gi|220943156|gb|ACL84121.1| CG11109-PA [synthetic construct]
gi|220953252|gb|ACL89169.1| CG11109-PA [synthetic construct]
Length = 358
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 113/274 (41%), Positives = 156/274 (56%), Gaps = 28/274 (10%)
Query: 45 GVAVEITNVLSQVPNVA-LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHI 103
GVAVE+ + +S VP + L S G+LQNLPSI+ LD QPG+++LDMCAAPGNK +HI
Sbjct: 105 GVAVEMQSNVSGVPTLGDLSSEDGLLQNLPSIVCVRVLDPQPGERILDMCAAPGNKTSHI 164
Query: 104 ALLMNDTGTLIALDKSKPRVTKLEETIKKL-QLSSIQTHVYDSTRINTSSQIDIERMKLQ 162
A LM D G+++ALD S RV + + KL SI HV++ST + +
Sbjct: 165 AELMGDRGSVVALDNSASRVRSM---LPKLGHYKSITAHVFNSTEAVAADAPSAPVGEFT 221
Query: 163 K-----ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSL 217
ESFDRILLDAPCSG G RP + + K + SY +IQ++L +
Sbjct: 222 GPPFPCESFDRILLDAPCSGLGNRPQL---SCSIKQVKVLSSYPHIQRRLFE-------- 270
Query: 218 FDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDL 277
Q + L++ GILVY TC+++ +E E ++AW L + E+ L P+ G GL
Sbjct: 271 ---QAVQLVRPGGILVYSTCTVTEDECECLVAWALRKFVELRLTDATPRWGGPGLPLPGF 327
Query: 278 EAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
EA ++QRFG P+ N DT+GFFI K +K
Sbjct: 328 EACKSRLLQRFG----PSGANADTVGFFIAKFQK 357
Score = 38.5 bits (88), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 21/26 (80%)
Query: 347 QIIVDQPCALAVLRGADVFAPGVLAM 372
+++VD C A+LRGA ++APGVLAM
Sbjct: 22 EVVVDTNCGAALLRGAHIYAPGVLAM 47
>gi|24668781|ref|NP_730761.1| CG11109, isoform B [Drosophila melanogaster]
gi|23094335|gb|AAN12208.1| CG11109, isoform B [Drosophila melanogaster]
gi|209417956|gb|ACI46516.1| FI01826p [Drosophila melanogaster]
Length = 439
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 113/274 (41%), Positives = 156/274 (56%), Gaps = 28/274 (10%)
Query: 45 GVAVEITNVLSQVPNVA-LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHI 103
GVAVE+ + +S VP + L S G+LQNLPSI+ LD QPG+++LDMCAAPGNK +HI
Sbjct: 186 GVAVEMQSNVSGVPTLGDLSSEDGLLQNLPSIVCVRVLDPQPGERILDMCAAPGNKTSHI 245
Query: 104 ALLMNDTGTLIALDKSKPRVTKLEETIKKL-QLSSIQTHVYDSTRINTSSQIDIERMKLQ 162
A LM D G+++ALD S RV + + KL SI HV++ST + +
Sbjct: 246 AELMGDRGSVVALDNSASRVRSM---LPKLGHYKSITAHVFNSTEAVAADAPSAPVGEFT 302
Query: 163 K-----ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSL 217
ESFDRILLDAPCSG G RP + + K + SY +IQ++L +
Sbjct: 303 GPPFPCESFDRILLDAPCSGLGNRPQL---SCSIKQVKVLSSYPHIQRRLFE-------- 351
Query: 218 FDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDL 277
Q + L++ GILVY TC+++ +E E ++AW L + E+ L P+ G GL
Sbjct: 352 ---QAVQLVRPGGILVYSTCTVTEDECECLVAWALRKFVELRLTDATPRWGGPGLPLPGF 408
Query: 278 EAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
EA ++QRFG P+ N DT+GFFI K +K
Sbjct: 409 EACKSRLLQRFG----PSGANADTVGFFIAKFQK 438
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 46/68 (67%), Gaps = 3/68 (4%)
Query: 308 KLRKKYG-EAPEIYIHPHLNDCIVIGPL-LKLSQSVVHHPV-QIIVDQPCALAVLRGADV 364
KL +YG ++P IY P+L + + I PL +L+++V + +++VD C A+LRGA +
Sbjct: 61 KLAIRYGVKSPRIYCLPNLPEMLCIDPLDSQLTKAVADSELKEVVVDTNCGAALLRGAHI 120
Query: 365 FAPGVLAM 372
+APGVLAM
Sbjct: 121 YAPGVLAM 128
>gi|195348858|ref|XP_002040964.1| GM22476 [Drosophila sechellia]
gi|194122474|gb|EDW44517.1| GM22476 [Drosophila sechellia]
Length = 440
Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 112/275 (40%), Positives = 157/275 (57%), Gaps = 28/275 (10%)
Query: 45 GVAVEITNVLSQVPNVA-LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHI 103
GVAVE+ + +S VP++ L S G+LQNLPSI+ LD QP +++LDMCAAPGNK +HI
Sbjct: 186 GVAVEMQSNVSGVPSLGDLSSEDGLLQNLPSIVCVRVLDPQPFERILDMCAAPGNKTSHI 245
Query: 104 ALLMNDTGTLIALDKSKPRVTKLEETIKKL-QLSSIQTHVYDSTRINTSSQIDIERMKLQ 162
A LM D G+++ALD S RV + + KL I HV++ST+ +
Sbjct: 246 AELMGDRGSVVALDNSASRVRSM---LPKLGHYKCITAHVFNSTKAVAPDAPPAPVGEFT 302
Query: 163 K-----ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSL 217
ESFDRILLDAPCSG G RP + + K + SY +IQ++L +
Sbjct: 303 GPPFPCESFDRILLDAPCSGLGNRPQL---SCSIKQAKVLSSYPHIQRQLFE-------- 351
Query: 218 FDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDL 277
Q + LL+ GILVY TC+++ +E E ++AW L + E+ L P+ G GL+
Sbjct: 352 ---QAVQLLRPGGILVYSTCTVTEDECECLVAWALGKFVELRLTDATPRWGGPGLSLPGF 408
Query: 278 EAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKK 312
EA ++QRFG P+ N DT+GFFI K +K+
Sbjct: 409 EASKSRLLQRFG----PSGANADTVGFFIAKFQKE 439
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 46/68 (67%), Gaps = 3/68 (4%)
Query: 308 KLRKKYG-EAPEIYIHPHLNDCIVIGPL-LKLSQSVVHHPV-QIIVDQPCALAVLRGADV 364
KL +YG ++P IY P+L + + I PL +L+++V + +++VD C A+LRGA +
Sbjct: 61 KLTARYGVKSPRIYFLPNLPEMLCIDPLDSQLTKAVADSELKEVVVDTNCGAALLRGAHI 120
Query: 365 FAPGVLAM 372
+APGVLAM
Sbjct: 121 YAPGVLAM 128
>gi|47217434|emb|CAG10203.1| unnamed protein product [Tetraodon nigroviridis]
Length = 337
Score = 190 bits (483), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 116/311 (37%), Positives = 166/311 (53%), Gaps = 50/311 (16%)
Query: 34 IYCYALDILFRGVAVEITNVLSQVPNV-ALDSSMGILQNLPSILAGHYLDVQPGQKVLDM 92
I+C D +G+ V++ L Q P+ + S+ LQNLPS++ GH L +PG++VLDM
Sbjct: 43 IFCS--DEPVKGIGVQMVEPLYQSPSFDQILPSLVFLQNLPSVVVGHVLGPRPGERVLDM 100
Query: 93 CAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR-INTS 151
CAAPG K H+A LM D G ++ALD+ K ++ ++ E + LQL SI+ ++ST+ ++T
Sbjct: 101 CAAPGGKTCHMAALMGDQGEVVALDRIKNKINRILENAQVLQLRSIKAFCFNSTQAVSTD 160
Query: 152 SQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAV 211
+ E ESFDR+LLDAPCSG GQRP+ + S K+I SY +Q+KL QA
Sbjct: 161 AAPHAEEPPFPPESFDRVLLDAPCSGLGQRPIMGSTWSL----KEICSYQPLQRKLFQAA 216
Query: 212 YRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL------- 264
+ LLKK G+LVY TC++++ ENE +AW L P + L +
Sbjct: 217 -----------VQLLKKGGVLVYSTCTVTLAENEEQVAWALQTFPCLSLQPQVRRPSQSG 265
Query: 265 --------------PQLGMKGLAHKDLEAEDQAVMQRFGPPL----------IPTDRNTD 300
P +G G+ L E ++QRF P L +P +TD
Sbjct: 266 TSVIGPSPLCFPQEPHIGAGGMQGAGLSPEQLRLLQRFRPELSWDQSRAAASLPHRADTD 325
Query: 301 TIGFFICKLRK 311
TIGFFI K K
Sbjct: 326 TIGFFIAKFLK 336
>gi|40714555|gb|AAR88536.1| RH33950p [Drosophila melanogaster]
Length = 450
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 111/275 (40%), Positives = 156/275 (56%), Gaps = 28/275 (10%)
Query: 45 GVAVEITNVLSQVPNVA-LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHI 103
GVAVE+ + +S VP + L S G+LQNLPSI+ LD QPG+++LDMCAAPGNK +HI
Sbjct: 186 GVAVEMQSNVSGVPTLGDLSSEDGLLQNLPSIVCVRVLDPQPGERILDMCAAPGNKTSHI 245
Query: 104 ALLMNDTGTLIALDKSKPRVTKLEETIKKL-QLSSIQTHVYDSTRINTSSQIDIERMKLQ 162
A LM D G+++ALD S RV + + KL SI HV++ST + +
Sbjct: 246 AELMGDRGSVVALDNSASRVRSM---LPKLGHYKSITAHVFNSTEAVAADAPSAPVGEFT 302
Query: 163 K-----ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSL 217
ESFDRILLDAPCSG G RP + + K + SY +IQ++L +
Sbjct: 303 GPPFPCESFDRILLDAPCSGLGNRPQL---SCSIKQVKVLSSYPHIQRRLFE-------- 351
Query: 218 FDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDL 277
Q + L++ GILVY TC+++ +E E ++AW L + E+ L P+ G GL
Sbjct: 352 ---QAVQLVRPGGILVYSTCTVTEDECECLVAWALRKFVELRLTDATPRWGGPGLPLPGF 408
Query: 278 EAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKK 312
EA ++QRFG P+ N DT+GFF C++ +
Sbjct: 409 EACKSRLLQRFG----PSGANADTVGFFYCEVSEN 439
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 46/68 (67%), Gaps = 3/68 (4%)
Query: 308 KLRKKYG-EAPEIYIHPHLNDCIVIGPL-LKLSQSVVHHPV-QIIVDQPCALAVLRGADV 364
KL +YG ++P IY P+L + + I PL +L+++V + +++VD C A+LRGA +
Sbjct: 61 KLAIRYGVKSPRIYCLPNLPEMLCIDPLDSQLTKAVADSELKEVVVDTNCGAALLRGAHI 120
Query: 365 FAPGVLAM 372
+APGVLAM
Sbjct: 121 YAPGVLAM 128
>gi|195592453|ref|XP_002085949.1| GD15057 [Drosophila simulans]
gi|194197958|gb|EDX11534.1| GD15057 [Drosophila simulans]
Length = 440
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 110/275 (40%), Positives = 158/275 (57%), Gaps = 28/275 (10%)
Query: 45 GVAVEITNVLSQVPNVA-LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHI 103
GVAVE+ + +S VP++ L + G+LQNLPSI+ LD QPG+++LDMCAAPGNK +HI
Sbjct: 186 GVAVEMRSNVSGVPSLGDLSNENGLLQNLPSIVCVRVLDPQPGERILDMCAAPGNKTSHI 245
Query: 104 ALLMNDTGTLIALDKSKPRVTKLEETIKKL-QLSSIQTHVYDSTR-----INTSSQIDIE 157
A LM D G+++ALD S RV + + KL I HV++ST+ ++ +
Sbjct: 246 AELMGDRGSVVALDNSASRVRSM---LPKLGHYKCITAHVFNSTKAVAPDAPSAPVGEFT 302
Query: 158 RMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSL 217
ESFDRILLDAPCSG G RP + + K + SY IQ++L +
Sbjct: 303 GPPFPCESFDRILLDAPCSGLGNRPQL---SCSIKQAKVLSSYPPIQRRLFE-------- 351
Query: 218 FDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDL 277
Q + LL+ G LVY TC+++ +E E ++AW L + ++ L P+ G GL+
Sbjct: 352 ---QAVQLLRPGGTLVYSTCTVTEDECECLVAWALGKFVQLRLTDATPRWGGPGLSLPGF 408
Query: 278 EAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKK 312
EA ++QRFG P+ N DT+GFFI K +K+
Sbjct: 409 EASKSRLLQRFG----PSGANADTVGFFIAKFQKE 439
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 3/68 (4%)
Query: 308 KLRKKYG-EAPEIYIHPHLNDCIVIGPL-LKLSQSVVHHPV-QIIVDQPCALAVLRGADV 364
KL +YG ++P IY P L + + I PL +L+++V + +++VD C A+LRGA +
Sbjct: 61 KLTARYGVKSPRIYCLPDLPEMLCIDPLDSQLTKAVADSELKEVVVDTNCGAALLRGAHI 120
Query: 365 FAPGVLAM 372
+APGVLAM
Sbjct: 121 YAPGVLAM 128
>gi|195441370|ref|XP_002068484.1| GK20395 [Drosophila willistoni]
gi|194164569|gb|EDW79470.1| GK20395 [Drosophila willistoni]
Length = 457
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 101/245 (41%), Positives = 145/245 (59%), Gaps = 15/245 (6%)
Query: 45 GVAVEITNVLSQVPNVA-LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHI 103
G+A+++ + +S VP++ L + G+LQNLPS++ L+ QPG +VLDMCAAPGNK +HI
Sbjct: 193 GIAIQMQSTVSGVPSLGDLSDAYGLLQNLPSMVCVRVLNPQPGDRVLDMCAAPGNKTSHI 252
Query: 104 ALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK 163
A LM D G L+ALD SK R+ ++ I + IQ+HV+DST+
Sbjct: 253 AELMRDQGVLVALDNSKSRIKAMQSRIGHYK--CIQSHVFDSTKALAEHNDQHNDPPFSS 310
Query: 164 ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGI 223
SFDRILLDAPCSG G RP A S L K +KSY NIQ++L Q +
Sbjct: 311 ASFDRILLDAPCSGIGNRPQLSCA-SQLKTAKDLKSYPNIQRRLF-----------GQAV 358
Query: 224 PLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQA 283
LL+ G LVY TC+++ E E ++ W L + PE+ L+ +P+LG GL+ + + +
Sbjct: 359 HLLRPGGTLVYSTCTVTEAECEEIVEWALRKFPEIHLLDAVPRLGHSGLSLPNFDQDQAK 418
Query: 284 VMQRF 288
++QRF
Sbjct: 419 LLQRF 423
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 347 QIIVDQPCALAVLRGADVFAPGVLAMPLG 375
+IIVD C A+LRG+ ++APGVLAM G
Sbjct: 110 EIIVDTSCGAALLRGSHIYAPGVLAMETG 138
>gi|391330884|ref|XP_003739882.1| PREDICTED: putative methyltransferase NSUN6-like [Metaseiulus
occidentalis]
Length = 441
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 112/268 (41%), Positives = 158/268 (58%), Gaps = 21/268 (7%)
Query: 45 GVAVEITNVLSQVPNVA-LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHI 103
G+AVE+T + Q P + + + LQNLPS++ LD QPGQ VLDMC+APG K TH+
Sbjct: 185 GIAVEVTQPIQQCPPLNRIHPEIMTLQNLPSVVCAKVLDPQPGQTVLDMCSAPGGKTTHL 244
Query: 104 ALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK 163
A LM +TGT+IALDK+ R+ K E + L+ ++ V+D T + S+ D+
Sbjct: 245 ATLMKNTGTVIALDKAGARLEKTREKCELWNLTCVKCVVHDGT-LPFSTNPDLAD---GP 300
Query: 164 ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGI 223
++FDRIL+DAPCS GQRP LNL ++++SY +Q+ LL+A
Sbjct: 301 QTFDRILIDAPCSALGQRPRL---QYRLNL-RQVQSYPCVQRALLRA-----------AC 345
Query: 224 PLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQA 283
LLK DG +VY TCS++ ENE V++W ++ P +ELV+ P LG GL + L +
Sbjct: 346 ELLKDDGYIVYSTCSINPAENEMVVSWAVNNLP-LELVEQTPHLGSVGLRCEGLTDHQRK 404
Query: 284 VMQRFGPPLIPTDRNTDTIGFFICKLRK 311
++QRF D N DTIGFFI K +K
Sbjct: 405 LLQRFDGAQEGDDFNVDTIGFFIAKFKK 432
Score = 44.7 bits (104), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 322 HPHLNDC-IVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFAPGVLAMPLG 375
HP L+D IV+ P + +S + Q+IV C AVLRGA+V+ PGVLA P G
Sbjct: 81 HPQLDDTLIVVSPKVPVSFAPCRR--QLIVGLECGEAVLRGANVYIPGVLAAPGG 133
>gi|326669730|ref|XP_001919347.3| PREDICTED: putative methyltransferase NSUN6-like [Danio rerio]
Length = 462
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 110/292 (37%), Positives = 162/292 (55%), Gaps = 31/292 (10%)
Query: 37 YALDILFRGVAVEITNVLSQVPNV-ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAA 95
++ D RG+A+ +T L Q P+ + + LQNLPS++ G+ L +PG++VLDMCAA
Sbjct: 186 FSSDKPGRGLAIRMTEPLYQSPSFDGVLTDELFLQNLPSVVVGYVLGPRPGERVLDMCAA 245
Query: 96 PGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTS--SQ 153
PG K THIA LM + G ++AL+K + ++ K+ + L+L I+ + +S +S +Q
Sbjct: 246 PGGKTTHIASLMGNQGVVVALEKVRSKMEKILRNAQMLKLDCIKAYCCNSIHAVSSDPAQ 305
Query: 154 IDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYR 213
E +ESFDRILLDAPCSG GQRP + S K++ SY +Q+KL R
Sbjct: 306 EYTEGPPFPEESFDRILLDAPCSGLGQRPNMSYSWSL----KEVCSYQPLQRKLFTTAVR 361
Query: 214 FVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLA 273
LLK G+LVY TC++++ ENE ++W L P + L +P +G +G+
Sbjct: 362 -----------LLKSGGVLVYSTCTVTLAENEEQVSWALKTFPCLTLQPQVPHVGSEGML 410
Query: 274 HKDLEAEDQAVMQRFGPPL-------------IPTDRNTDTIGFFICKLRKK 312
L E + ++QRF P L +P D N DTIGFFI K K+
Sbjct: 411 GAGLSCEQRRLLQRFRPELGWTGERFTFSLEKLPQDANQDTIGFFIAKFSKR 462
Score = 38.9 bits (89), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 317 PEIYIHPHLNDCI---VIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFAPGVLA 371
P ++ HP L D + V GP + Q V +IV C AVLRGA VF PG+++
Sbjct: 83 PAVHTHPELPDVLLLPVCGP--RSIQPVEPVASAVIVGSQCGSAVLRGAHVFTPGIIS 138
>gi|196009916|ref|XP_002114823.1| hypothetical protein TRIADDRAFT_28123 [Trichoplax adhaerens]
gi|190582885|gb|EDV22957.1| hypothetical protein TRIADDRAFT_28123 [Trichoplax adhaerens]
Length = 426
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 105/251 (41%), Positives = 144/251 (57%), Gaps = 19/251 (7%)
Query: 44 RGVAVEITNVLSQVPNV-ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTH 102
RG+AVE++ L P + + LQNLPS++A H L+ G +LDMC+APG K TH
Sbjct: 161 RGIAVEVSEPLYLFPALNGIGDEFVFLQNLPSVVASHVLNPHEGDTILDMCSAPGGKATH 220
Query: 103 IALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTS---SQIDIERM 159
IA LM + GT+IALDKSK ++ K++ ++L LS I+ +DST+ Q +
Sbjct: 221 IATLMKNKGTIIALDKSKSKLHKIKSNAERLNLSCIEVFAFDSTKAVADICQCQEGLRCP 280
Query: 160 KLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFD 219
ESFDRILLD PCSG GQRP ++ K+++SY+ Q+KLL
Sbjct: 281 PFALESFDRILLDPPCSGMGQRPCL----AYKMSAKELRSYSCYQRKLLS---------- 326
Query: 220 WQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEA 279
Q LLK GILVYCTC+L++ ENE I+W L +PE+EL P LG G+ + L
Sbjct: 327 -QAFQLLKVGGILVYCTCTLTLSENERNISWALSNYPELELCNQSPYLGCPGIQVEGLNK 385
Query: 280 EDQAVMQRFGP 290
+ +QRF P
Sbjct: 386 DQANSLQRFDP 396
>gi|440792124|gb|ELR13352.1| NOL1/NOP2/sun family domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 469
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 104/279 (37%), Positives = 154/279 (55%), Gaps = 28/279 (10%)
Query: 45 GVAVEITNVLSQVP--NVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTH 102
GVA+E+ + + P N +D + LQN+PSI+ GH LD QPG +LDMCAAPG K TH
Sbjct: 209 GVAIEMVEQIYETPSLNGVMDDLL-FLQNIPSIVVGHLLDPQPGDLILDMCAAPGGKTTH 267
Query: 103 IALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRI-----NTSSQIDIE 157
IA L ND + ALDK+ +V ++ ++L ++S+ D+T+ + Q+ +
Sbjct: 268 IAALANDRARIFALDKNVGKVEGVQRLCQRLGITSVTALTLDATKALLPADSAPDQVGEK 327
Query: 158 RMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSL 217
+ +FDRILLD PCSG G RP + ++ ++++A Q+K++
Sbjct: 328 ITGWRAHTFDRILLDPPCSGLGNRPRLKDTQTW----SALQTHAAYQRKIIHTA------ 377
Query: 218 FDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDL 277
+PLLK G LVY TC++S ENE +A+IL PE+ELV+ +P+LG GL L
Sbjct: 378 -----VPLLKPGGTLVYSTCTISPLENEENVAFILRMFPEMELVEQVPRLGASGLDSTSL 432
Query: 278 EAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKKYGEA 316
++ ++QRF P L P GFFI K K+ A
Sbjct: 433 GPAERGLVQRFDPTLDP-----GVTGFFIAKFVKRRTSA 466
>gi|157817079|ref|NP_001100837.1| NOP2/Sun domain family, member 6 [Rattus norvegicus]
gi|149021140|gb|EDL78747.1| NOL1/NOP2/Sun domain family, member 6 (predicted) [Rattus
norvegicus]
gi|171846678|gb|AAI62024.1| Nsun6 protein [Rattus norvegicus]
Length = 476
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 113/295 (38%), Positives = 154/295 (52%), Gaps = 46/295 (15%)
Query: 43 FRGVAVEITNVLSQVPNV-ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLT 101
+G+ + +T + P+ + S LQNLPS + H LD QPG+K+LD+CAAPG K T
Sbjct: 191 LKGIGIRMTEPIYLSPSFDNVLSGYIFLQNLPSTVVAHVLDPQPGEKILDLCAAPGGKTT 250
Query: 102 HIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMK- 160
HIA LM D G +IALDK +VTKL++ L L SI+ +D+T+ + +E M
Sbjct: 251 HIAALMRDQGEVIALDKILTKVTKLKQNASLLGLHSIRAFCFDATK-----ALKLEVMDG 305
Query: 161 ------LQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRF 214
ESFDRILLDAPCSG GQRP + K++ SY +Q+KLL R
Sbjct: 306 VDGAPPFLPESFDRILLDAPCSGLGQRPNMACTWTL----KEVTSYQPLQRKLLNVAVR- 360
Query: 215 VSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAH 274
LLK G+LVY TC++++ ENE +AW L P ++L PQ+G +G+
Sbjct: 361 ----------LLKPGGVLVYSTCTVTLAENEEQVAWALRTFPCLQLQPQEPQIGGEGMLG 410
Query: 275 KDLEAEDQAVMQRFGPPLIPTDR------------------NTDTIGFFICKLRK 311
L E +QRF P ++P + N D IGFFI K K
Sbjct: 411 AGLSLEQLKQLQRFDPCVVPLESMDTNSLGDARREDVIWLANKDCIGFFIAKFLK 465
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 290 PPLIPTDR-NTD------TIGFFICKLRKKYGEAP-EIYIHPHLNDCIVIGPLLKLSQSV 341
PPL T R NT G + +L+K++G + + HP L D ++I P+ +++
Sbjct: 49 PPLFTTVRVNTHLGSVEHVRGLLLEELQKQFGGSSIPVLQHPALPDVLLI-PMTGPRKNI 107
Query: 342 VHHPVQIIVDQPCALAVLRGADVFAPGVLA 371
++IV C AVLRGA V+ PGV++
Sbjct: 108 ERQQCEVIVGAQCGNAVLRGAHVYVPGVVS 137
>gi|397480441|ref|XP_003811492.1| PREDICTED: putative methyltransferase NSUN6 [Pan paniscus]
Length = 469
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 112/292 (38%), Positives = 158/292 (54%), Gaps = 40/292 (13%)
Query: 43 FRGVAVEITNVLSQVPNVALDSSMG---ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNK 99
+G+ + +T + P + DS + LQNLPS L H L+ QPG+K+LD+CAAPG K
Sbjct: 191 LKGMGIRMTEPVYLSP--SFDSVLPRYLFLQNLPSALVSHVLNPQPGEKILDLCAAPGGK 248
Query: 100 LTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERM 159
THIA LM+D G +IALDK +V K+++ L L+SI+ +D T+ ++
Sbjct: 249 TTHIAALMHDQGEVIALDKIFNKVEKIKQNALLLGLNSIRAFCFDGTKAVKLDMVEDTEG 308
Query: 160 K--LQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSL 217
+ ESFDRILLDAPCSG GQRP + S K++ SY +Q+KL A
Sbjct: 309 EPPFLPESFDRILLDAPCSGMGQRPNMASTWSL----KEVASYQPLQRKLFTA------- 357
Query: 218 FDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDL 277
+ LLK +G+LVY TC++++ ENE +AW L + P ++L PQ+G +G+ L
Sbjct: 358 ----AVQLLKPEGVLVYSTCTITLAENEEQVAWALTKFPCLQLQPQEPQIGGEGMRGAGL 413
Query: 278 EAEDQAVMQRFGPPLIP---TD---------------RNTDTIGFFICKLRK 311
E +QRF P +P TD N D+IGFFI K K
Sbjct: 414 SCEQLKQLQRFDPSAVPLPDTDMDSLREARREDMLRLANKDSIGFFIAKFVK 465
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 308 KLRKKY-GEAPEIYIHPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFA 366
+L+K++ G + I HP L D ++I P++ +++ + IV C AVLRGA V+A
Sbjct: 74 ELQKQFNGLSVPILQHPDLQDVLLI-PVIGPRKNIKKQQCEAIVGAQCGNAVLRGAHVYA 132
Query: 367 PGVLA 371
PG+++
Sbjct: 133 PGIVS 137
>gi|114629648|ref|XP_507683.2| PREDICTED: putative methyltransferase NSUN6 isoform 3 [Pan
troglodytes]
gi|410209552|gb|JAA01995.1| NOP2/Sun domain family, member 6 [Pan troglodytes]
gi|410259322|gb|JAA17627.1| NOP2/Sun domain family, member 6 [Pan troglodytes]
Length = 469
Score = 180 bits (457), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 112/292 (38%), Positives = 158/292 (54%), Gaps = 40/292 (13%)
Query: 43 FRGVAVEITNVLSQVPNVALDSSMG---ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNK 99
+G+ + +T + P + DS + LQNLPS L H L+ QPG+K+LD+CAAPG K
Sbjct: 191 LKGMGIRMTEPVYLSP--SFDSVLPRYLFLQNLPSALVSHVLNPQPGEKILDLCAAPGGK 248
Query: 100 LTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERM 159
THIA LM+D G +IALDK +V K+++ L L+SI+ +D T+ ++
Sbjct: 249 TTHIAALMHDQGEVIALDKIFNKVEKIKQNALLLGLNSIRAFCFDGTKAVKLDMVEDTEG 308
Query: 160 K--LQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSL 217
+ ESFDRILLDAPCSG GQRP + S K++ SY +Q+KL A
Sbjct: 309 EPPFLPESFDRILLDAPCSGMGQRPNMASTWSL----KEVASYQPLQRKLFTA------- 357
Query: 218 FDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDL 277
+ LLK +G+LVY TC++++ ENE +AW L + P ++L PQ+G +G+ L
Sbjct: 358 ----AVQLLKPEGVLVYSTCTITLAENEEQVAWALTKFPCLQLQPQEPQIGGEGMRGAGL 413
Query: 278 EAEDQAVMQRFGPPLIP---TD---------------RNTDTIGFFICKLRK 311
E +QRF P +P TD N D+IGFFI K K
Sbjct: 414 SCEQLKQLQRFDPSAVPLPDTDMDSLREARREDMLRLANKDSIGFFIAKFVK 465
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 308 KLRKKY-GEAPEIYIHPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFA 366
+L+K++ G + I HP L D ++I P++ +++ + IV C AVLRGA V+A
Sbjct: 74 ELQKQFNGLSVPILQHPDLQDVLLI-PVIGPRKNIKKQQCEAIVGAQCGNAVLRGAHVYA 132
Query: 367 PGVLA 371
PG+++
Sbjct: 133 PGIVS 137
>gi|321456480|gb|EFX67587.1| hypothetical protein DAPPUDRAFT_63836 [Daphnia pulex]
Length = 449
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 112/291 (38%), Positives = 153/291 (52%), Gaps = 38/291 (13%)
Query: 44 RGVAVEITNVLSQVPNVA---LDSSM-----GILQNLPSILAGHYLDVQPGQKVLDMCAA 95
+G+A+ + L P++ LD+ G LQNLPS+L GH L+ Q VLD+CAA
Sbjct: 171 KGLAINMIEPLFYCPSIGDILLDNKTIGFQKGFLQNLPSVLCGHALNPQSHHLVLDLCAA 230
Query: 96 PGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDST--------- 146
PG K THI LM + G++IALDKS ++ +++E +KL L++I V DST
Sbjct: 231 PGGKTTHIGSLMENKGSVIALDKSASKIKQIQENSEKLGLTNITAFVQDSTTACIMEKPE 290
Query: 147 ---RINTSSQIDIERM-KLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYAN 202
T++ + SFDRILLDAPCS GQRP YN K+++S+A
Sbjct: 291 HLQEYETTAVASLPTSPPFLPNSFDRILLDAPCSALGQRPQLYNPIRL----KEVQSFAR 346
Query: 203 IQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQ 262
+QKKL + LL+ G +VY TC+ ++ ENE +I W L P + +
Sbjct: 347 LQKKLFLTAAQ-----------LLRPGGRMVYSTCTYNIAENEEIIDWALGLFPSLRVTN 395
Query: 263 TLPQLGMKGLAHKDLEAEDQAVMQRFGPP--LIPTDRNTDTIGFFICKLRK 311
Q+G G L ED MQRFG P + D N+DTIGFFIC L K
Sbjct: 396 FNIQIGKPGYRIGRLTEEDCIAMQRFGSPNESVSMDENSDTIGFFICCLEK 446
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 317 PEIYIHPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFAPGVLAMPLG 375
P + H ++D +V+ + + HP ++V CA+A+LRGA+ ++PG+ A+P G
Sbjct: 63 PVVQFHHKVHDILVVKSNHAIEKVEPIHP-HVMVGLGCAIAILRGANAYSPGITAIPNG 120
>gi|354482489|ref|XP_003503430.1| PREDICTED: putative methyltransferase NSUN6 [Cricetulus griseus]
gi|344245942|gb|EGW02046.1| Putative methyltransferase NSUN6 [Cricetulus griseus]
Length = 476
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 113/290 (38%), Positives = 153/290 (52%), Gaps = 36/290 (12%)
Query: 43 FRGVAVEITNVLSQVPNV-ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLT 101
+G+ + +T + P+ + S LQNLPS + H L+ QPG+K+LD+CAAPG K T
Sbjct: 191 LKGIGIRMTEPIYLSPSFDNVLPSYLFLQNLPSAVVAHVLNPQPGEKILDLCAAPGGKTT 250
Query: 102 HIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMK- 160
HIA LM D G +IALDK +V KL++ L L SI+ +D+T+ ID
Sbjct: 251 HIAALMQDQGEVIALDKVLNKVEKLKQNASLLGLHSIRAFCFDATKALKLGVIDGTEGTP 310
Query: 161 -LQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFD 219
ESFDRILLDAPCSG GQRP + K++ SY +Q+KLL R
Sbjct: 311 PFLPESFDRILLDAPCSGMGQRPNMACTWTL----KEVTSYQPLQRKLLNVAVR------ 360
Query: 220 WQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEA 279
LLK G+LVY TC++++ ENE +AW L P ++L PQ+G +G+ L
Sbjct: 361 -----LLKPGGVLVYSTCTVTLAENEEQVAWALTTFPCLQLQPQEPQIGGEGMMGAGLAP 415
Query: 280 EDQAVMQRFGPPLIP-----TD-------------RNTDTIGFFICKLRK 311
E ++QRF P ++P TD N D IGFFI K K
Sbjct: 416 EQLKLLQRFDPSVVPLQDMDTDCLSDAKKEDMIWLANKDCIGFFIAKFIK 465
>gi|148676129|gb|EDL08076.1| NOL1/NOP2/Sun domain family 6, isoform CRA_a [Mus musculus]
Length = 455
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 113/291 (38%), Positives = 156/291 (53%), Gaps = 38/291 (13%)
Query: 43 FRGVAVEITNVLSQVPNV-ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLT 101
+G+ + +T + P+ + S LQNLPS + H LD QPG+K+LDMCAAPG K T
Sbjct: 170 LKGIGIRMTEPIYLSPSFDNVLPSYIFLQNLPSTVVAHVLDPQPGEKILDMCAAPGGKTT 229
Query: 102 HIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDST---RINTSSQIDIER 158
H A LM D G +IALDK +V KL++ L L SI+ +D+T +++T+ I+
Sbjct: 230 HTAALMQDKGEVIALDKILTKVNKLKQNASLLGLHSIRAFCFDATKALKLDTTDGIEGGP 289
Query: 159 MKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLF 218
L ESFDRI+LDAPCSG GQRP + K++ SY +Q+KLL
Sbjct: 290 PFL-PESFDRIILDAPCSGMGQRPNMACTWTL----KEVTSYQPLQRKLLHVA------- 337
Query: 219 DWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLE 278
+ LLK G+LVY TC++++ ENE +AW L P ++L PQ+G +G+ L
Sbjct: 338 ----VQLLKPGGVLVYSTCTITLAENEEQVAWALRTFPCLQLQPQEPQIGGEGMVGAGLT 393
Query: 279 AEDQAVMQRFGPPLIP-----TDR-------------NTDTIGFFICKLRK 311
E +QRF P ++P TD N D IGFFI K K
Sbjct: 394 LEQLKQLQRFDPSVVPLQNMDTDSLGEARREDMIWLANKDCIGFFIAKFLK 444
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 303 GFFICKLRKKYGEAP-EIYIHPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRG 361
G + +L+K++GE+ + HP L D ++I P+ +++ ++IV C AVLRG
Sbjct: 48 GLLLEELQKQFGESSIPVVQHPALPDVLLI-PMTGPRKNIERQQGEVIVGAQCGNAVLRG 106
Query: 362 ADVFAPGVLA 371
A V+ PG+++
Sbjct: 107 AHVYVPGIVS 116
>gi|19344072|gb|AAH25622.1| Nsun6 protein [Mus musculus]
Length = 362
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 113/291 (38%), Positives = 156/291 (53%), Gaps = 38/291 (13%)
Query: 43 FRGVAVEITNVLSQVPNV-ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLT 101
+G+ + +T + P+ + S LQNLPS + H LD QPG+K+LDMCAAPG K T
Sbjct: 77 LKGIGIRMTEPIYLSPSFDNVLPSYIFLQNLPSTVVAHVLDPQPGEKILDMCAAPGGKTT 136
Query: 102 HIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDST---RINTSSQIDIER 158
H A LM D G +IALDK +V KL++ L L SI+ +D+T +++T+ I+
Sbjct: 137 HTAALMQDKGEVIALDKILTKVNKLKQNASLLGLHSIRAFCFDATKALKLDTTDGIEGGP 196
Query: 159 MKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLF 218
L ESFDRI+LDAPCSG GQRP + K++ SY +Q+KLL
Sbjct: 197 PFL-PESFDRIILDAPCSGMGQRPNMACTWTL----KEVTSYQPLQRKLLHVA------- 244
Query: 219 DWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLE 278
+ LLK G+LVY TC++++ ENE +AW L P ++L PQ+G +G+ L
Sbjct: 245 ----VQLLKPGGVLVYSTCTITLAENEEQVAWALRTFPCLQLQPQEPQIGGEGMVGAGLT 300
Query: 279 AEDQAVMQRFGPPLIP-----TDR-------------NTDTIGFFICKLRK 311
E +QRF P ++P TD N D IGFFI K K
Sbjct: 301 LEQLKQLQRFDPSVVPLQNMDTDSLGEARREDMIWLANKDCIGFFIAKFLK 351
>gi|405960623|gb|EKC26529.1| Putative methyltransferase NSUN6 [Crassostrea gigas]
Length = 436
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 104/278 (37%), Positives = 154/278 (55%), Gaps = 26/278 (9%)
Query: 45 GVAVEITNVLSQVPNVA-LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHI 103
GV + +T L + P ++ L + + QNLPSI+ H LD +PG+++LDMCAAPG K THI
Sbjct: 171 GVGILMTEPLYEAPCLSDLRPDLIMAQNLPSIVCTHVLDPKPGERILDMCAAPGGKTTHI 230
Query: 104 ALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQ-IDIERMKLQ 162
A M + G +IA+D+S +V K+ +++ L+ + H D+ ++ + DI ++
Sbjct: 231 ASRMQNKGEVIAIDRSDVKVEKIRSNLERWALTCVTCHACDALKVTVGQRGGDINFPEIP 290
Query: 163 KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQG 222
E FDRILLD PCS GQRP NA + +L KSY Q+K ++ +
Sbjct: 291 AEYFDRILLDVPCSALGQRPSIKNAMTLNSL----KSYPGYQRKFIR-----------KA 335
Query: 223 IPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQ 282
+ LL+ G+LVY TC++++EENE W+L PE+ L+ P LG +G + L + +
Sbjct: 336 VQLLRPGGVLVYSTCTITMEENEKQAVWMLENFPELILIAQHPHLGSRGRQCRGLSDDQR 395
Query: 283 AVMQRFGPPL-IPTDR--------NTDTIGFFICKLRK 311
V+Q F P I D N DTIGFFI K K
Sbjct: 396 QVLQMFDPACDISRDGSCDKMAVYNRDTIGFFIAKFTK 433
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 12/64 (18%)
Query: 315 EAPEIYIHPHLNDCIVIG-----PLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFAPGV 369
+ P+ ++HP L+D +VI P+ K+ + ++I+DQ C +AV+RGAD+F G+
Sbjct: 80 DPPQSFLHPELDDVLVIENRGPRPIKKMEK-------EVIIDQSCGMAVMRGADIFVQGI 132
Query: 370 LAMP 373
L P
Sbjct: 133 LGAP 136
>gi|126341505|ref|XP_001377237.1| PREDICTED: putative methyltransferase NSUN6 [Monodelphis domestica]
Length = 467
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 110/296 (37%), Positives = 157/296 (53%), Gaps = 36/296 (12%)
Query: 37 YALDILFRGVAVEITNVLSQVPNV--ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCA 94
++L+ +G+ + +T + P+ L SS+ LQNLPS++ H L+ QPG+K+LDMCA
Sbjct: 185 FSLNSPLKGIGIRMTEPVYLSPSFDNVLSSSL-FLQNLPSVVVSHVLNPQPGEKILDMCA 243
Query: 95 APGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQI 154
APG K THIA LM D G +IA+DK +V K+++ LQL+ I+ + T+ +
Sbjct: 244 APGGKTTHIAALMRDQGEVIAMDKIPSKVEKIKQNAALLQLNCIRAFCCNGTKALGKIED 303
Query: 155 DIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRF 214
ESFDRILLDAPCSG GQRP ++ K++ SY +Q+KL
Sbjct: 304 GQGGPPFSPESFDRILLDAPCSGMGQRPNM----TYTWTLKEVMSYQPLQRKLFTV---- 355
Query: 215 VSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAH 274
+ LLK G+LVY TC++++ ENE +AW L P ++L P +G +G+
Sbjct: 356 -------AVQLLKPGGVLVYSTCTITLAENEEQVAWALTAFPCLQLQSQEPHIGGEGMMG 408
Query: 275 KDLEAEDQAVMQRFGPPLIP---TD---------------RNTDTIGFFICKLRKK 312
L E +QRF P +IP TD N D IGFFI K K+
Sbjct: 409 AGLSLEQLKQLQRFDPSIIPLKSTDITSIREARREDMIWLANKDCIGFFIAKFVKR 464
Score = 42.0 bits (97), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 57/110 (51%), Gaps = 10/110 (9%)
Query: 271 GLAHKDLEAEDQAVMQRFG-PPLIPTDR-NTDTIG------FFICKLRKKY-GEAPEIYI 321
L ++ E + +A++ PP T R NT + + ++ K++ G + I
Sbjct: 29 ALGVQEAERKFEALLNHLSHPPAFTTVRVNTHLVSVKHVKDLLLEEIHKQFNGLSVPILQ 88
Query: 322 HPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFAPGVLA 371
HP + D ++I P++ ++ P+++IV C AVLRGA V+ PG+++
Sbjct: 89 HPDVQDVLLI-PVIGPRNNINKQPLEVIVGAHCGNAVLRGAHVYVPGIMS 137
>gi|260099658|ref|NP_083226.3| putative methyltransferase NSUN6 isoform a [Mus musculus]
gi|260099660|ref|NP_001159413.1| putative methyltransferase NSUN6 isoform a [Mus musculus]
gi|119372268|sp|Q7TS68.2|NSUN6_MOUSE RecName: Full=Putative methyltransferase NSUN6; AltName:
Full=NOL1/NOP2/Sun domain family member 6
gi|12855745|dbj|BAB30442.1| unnamed protein product [Mus musculus]
gi|26346707|dbj|BAC37002.1| unnamed protein product [Mus musculus]
gi|74208798|dbj|BAE21163.1| unnamed protein product [Mus musculus]
gi|148676131|gb|EDL08078.1| NOL1/NOP2/Sun domain family 6, isoform CRA_c [Mus musculus]
Length = 476
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 113/291 (38%), Positives = 156/291 (53%), Gaps = 38/291 (13%)
Query: 43 FRGVAVEITNVLSQVPNV-ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLT 101
+G+ + +T + P+ + S LQNLPS + H LD QPG+K+LDMCAAPG K T
Sbjct: 191 LKGIGIRMTEPIYLSPSFDNVLPSYIFLQNLPSTVVAHVLDPQPGEKILDMCAAPGGKTT 250
Query: 102 HIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDST---RINTSSQIDIER 158
H A LM D G +IALDK +V KL++ L L SI+ +D+T +++T+ I+
Sbjct: 251 HTAALMQDKGEVIALDKILTKVNKLKQNASLLGLHSIRAFCFDATKALKLDTTDGIEGGP 310
Query: 159 MKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLF 218
L ESFDRI+LDAPCSG GQRP + K++ SY +Q+KLL
Sbjct: 311 PFL-PESFDRIILDAPCSGMGQRPNMACTWTL----KEVTSYQPLQRKLLHVA------- 358
Query: 219 DWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLE 278
+ LLK G+LVY TC++++ ENE +AW L P ++L PQ+G +G+ L
Sbjct: 359 ----VQLLKPGGVLVYSTCTITLAENEEQVAWALRTFPCLQLQPQEPQIGGEGMVGAGLT 414
Query: 279 AEDQAVMQRFGPPLIP-----TDR-------------NTDTIGFFICKLRK 311
E +QRF P ++P TD N D IGFFI K K
Sbjct: 415 LEQLKQLQRFDPSVVPLQNMDTDSLGEARREDMIWLANKDCIGFFIAKFLK 465
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 303 GFFICKLRKKYGEAP-EIYIHPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRG 361
G + +L+K++GE+ + HP L D ++I P+ +++ ++IV C AVLRG
Sbjct: 69 GLLLEELQKQFGESSIPVVQHPALPDVLLI-PMTGPRKNIERQQGEVIVGAQCGNAVLRG 127
Query: 362 ADVFAPGVLA 371
A V+ PG+++
Sbjct: 128 AHVYVPGIVS 137
>gi|260099664|ref|NP_001159415.1| putative methyltransferase NSUN6 isoform c [Mus musculus]
Length = 425
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 113/291 (38%), Positives = 156/291 (53%), Gaps = 38/291 (13%)
Query: 43 FRGVAVEITNVLSQVPNV-ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLT 101
+G+ + +T + P+ + S LQNLPS + H LD QPG+K+LDMCAAPG K T
Sbjct: 140 LKGIGIRMTEPIYLSPSFDNVLPSYIFLQNLPSTVVAHVLDPQPGEKILDMCAAPGGKTT 199
Query: 102 HIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDST---RINTSSQIDIER 158
H A LM D G +IALDK +V KL++ L L SI+ +D+T +++T+ I+
Sbjct: 200 HTAALMQDKGEVIALDKILTKVNKLKQNASLLGLHSIRAFCFDATKALKLDTTDGIEGGP 259
Query: 159 MKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLF 218
L ESFDRI+LDAPCSG GQRP + K++ SY +Q+KLL
Sbjct: 260 PFL-PESFDRIILDAPCSGMGQRPNMACTWTL----KEVTSYQPLQRKLLHVA------- 307
Query: 219 DWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLE 278
+ LLK G+LVY TC++++ ENE +AW L P ++L PQ+G +G+ L
Sbjct: 308 ----VQLLKPGGVLVYSTCTITLAENEEQVAWALRTFPCLQLQPQEPQIGGEGMVGAGLT 363
Query: 279 AEDQAVMQRFGPPLIP-----TDR-------------NTDTIGFFICKLRK 311
E +QRF P ++P TD N D IGFFI K K
Sbjct: 364 LEQLKQLQRFDPSVVPLQNMDTDSLGEARREDMIWLANKDCIGFFIAKFLK 414
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 303 GFFICKLRKKYGEAP-EIYIHPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRG 361
G + +L+K++GE+ + HP L D ++I P+ +++ ++IV C AVLRG
Sbjct: 18 GLLLEELQKQFGESSIPVVQHPALPDVLLI-PMTGPRKNIERQQGEVIVGAQCGNAVLRG 76
Query: 362 ADVFAPGVLA 371
A V+ PG+++
Sbjct: 77 AHVYVPGIVS 86
>gi|296206262|ref|XP_002750130.1| PREDICTED: putative methyltransferase NSUN6 isoform 1 [Callithrix
jacchus]
Length = 468
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 106/263 (40%), Positives = 143/263 (54%), Gaps = 34/263 (12%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
LQNLPS + H L+ QPG+K+LD+CAAPG K THIA LM+D G +IALDK +V K++
Sbjct: 217 FLQNLPSAVVTHVLNPQPGEKILDLCAAPGGKTTHIAALMHDQGEVIALDKIFNKVEKIQ 276
Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDIERM-KLQKESFDRILLDAPCSGFGQRPMFYN 186
+ L L+SI+ +D T+ +D E E+FDRILLDAPCSG GQRP
Sbjct: 277 QNASLLGLNSIRAFCFDGTKAVKLDMVDTEEEPPFLPETFDRILLDAPCSGMGQRPNMAC 336
Query: 187 ANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEA 246
S K++ SY +Q+KL + LLK G+LVY TC++++ ENE
Sbjct: 337 TWSL----KEVTSYQPLQRKLFTV-----------AVQLLKPGGVLVYSTCTITLAENEE 381
Query: 247 VIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIP---TD------- 296
+AW L + P ++L PQ+G +G+ L E +QRF P +P TD
Sbjct: 382 QVAWALTKFPCLQLQPQEPQIGGEGMRGAGLSCEQLKQLQRFDPSAVPLPDTDVDSLRET 441
Query: 297 --------RNTDTIGFFICKLRK 311
N D+IGFFI K K
Sbjct: 442 RREDMLRLANKDSIGFFIAKFVK 464
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 319 IYIHPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFAPGVLA 371
I HP L D ++I P++ +++ + IV C AVLRGA V+APG+++
Sbjct: 86 ILEHPDLQDVLLI-PVIGPRKNIKKQQCEAIVGAQCGNAVLRGAHVYAPGIVS 137
>gi|281209306|gb|EFA83479.1| NOL1/NOP2/Sun family protein [Polysphondylium pallidum PN500]
Length = 435
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 105/269 (39%), Positives = 157/269 (58%), Gaps = 24/269 (8%)
Query: 45 GVAVEITNVLSQVPNV-ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHI 103
GVA+E+T + + P + AL + LQ+LPSILA LDV+ GQ+VLDMC+APG K T I
Sbjct: 190 GVAIEMTERIYECPPLNALFPDLLFLQHLPSILAVFQLDVKSGQRVLDMCSAPGGKTTLI 249
Query: 104 ALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK 163
A LM+DTGT+IA+DK+K + +++ +L + S+ DS ++ + + +
Sbjct: 250 ASLMSDTGTIIAIDKNKKKQQTVQKLCLELGIKSVTCLSRDSAKLTKQPR---DLPEFAD 306
Query: 164 ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGI 223
ESFDRILLD PCSG G RP F + ++L + +IQ++L+ +
Sbjct: 307 ESFDRILLDGPCSGLGSRPRFIEPSKLIDL----TNATDIQRRLID-----------NAV 351
Query: 224 PLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQA 283
PLLK+ GILVY TC+++ EENE +A++L +H + L+ P +G +GL L E Q
Sbjct: 352 PLLKRGGILVYSTCTINPEENEQNVAYLLAKHSNMRLIAQFPHVGDRGLQKCGLTPEQQH 411
Query: 284 VMQRFGPPLIPTDRNTDTIGFFICKLRKK 312
++QRF P +IGFFI + K+
Sbjct: 412 LVQRFDPS-----NKLSSIGFFIARFIKE 435
>gi|148676130|gb|EDL08077.1| NOL1/NOP2/Sun domain family 6, isoform CRA_b [Mus musculus]
Length = 494
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 113/291 (38%), Positives = 156/291 (53%), Gaps = 38/291 (13%)
Query: 43 FRGVAVEITNVLSQVPNV-ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLT 101
+G+ + +T + P+ + S LQNLPS + H LD QPG+K+LDMCAAPG K T
Sbjct: 209 LKGIGIRMTEPIYLSPSFDNVLPSYIFLQNLPSTVVAHVLDPQPGEKILDMCAAPGGKTT 268
Query: 102 HIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDST---RINTSSQIDIER 158
H A LM D G +IALDK +V KL++ L L SI+ +D+T +++T+ I+
Sbjct: 269 HTAALMQDKGEVIALDKILTKVNKLKQNASLLGLHSIRAFCFDATKALKLDTTDGIEGGP 328
Query: 159 MKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLF 218
L ESFDRI+LDAPCSG GQRP + K++ SY +Q+KLL
Sbjct: 329 PFL-PESFDRIILDAPCSGMGQRPNMACTWTL----KEVTSYQPLQRKLLHVA------- 376
Query: 219 DWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLE 278
+ LLK G+LVY TC++++ ENE +AW L P ++L PQ+G +G+ L
Sbjct: 377 ----VQLLKPGGVLVYSTCTITLAENEEQVAWALRTFPCLQLQPQEPQIGGEGMVGAGLT 432
Query: 279 AEDQAVMQRFGPPLIP-----TDR-------------NTDTIGFFICKLRK 311
E +QRF P ++P TD N D IGFFI K K
Sbjct: 433 LEQLKQLQRFDPSVVPLQNMDTDSLGEARREDMIWLANKDCIGFFIAKFLK 483
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 303 GFFICKLRKKYGEAP-EIYIHPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRG 361
G + +L+K++GE+ + HP L D ++I P+ +++ ++IV C AVLRG
Sbjct: 87 GLLLEELQKQFGESSIPVVQHPALPDVLLI-PMTGPRKNIERQQGEVIVGAQCGNAVLRG 145
Query: 362 ADVFAPGVLA 371
A V+ PG+++
Sbjct: 146 AHVYVPGIVS 155
>gi|426364103|ref|XP_004049161.1| PREDICTED: putative methyltransferase NSUN6 [Gorilla gorilla
gorilla]
Length = 469
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 112/292 (38%), Positives = 157/292 (53%), Gaps = 40/292 (13%)
Query: 43 FRGVAVEITNVLSQVPNVALDSSMG---ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNK 99
+G+ + +T + P + DS + LQNLPS L H L+ QPG+K+LD+CAAPG K
Sbjct: 191 LKGMGIRMTEPVYLSP--SFDSVLPRYLFLQNLPSALVSHVLNPQPGEKILDLCAAPGGK 248
Query: 100 LTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERM 159
THIA LM+D G +IALDK +V K+++ L L+SI+ +D T+ ++
Sbjct: 249 TTHIAALMHDQGEVIALDKIFNKVEKIKQNALLLGLNSIRAFCFDGTKAVKLDMVEDTEG 308
Query: 160 K--LQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSL 217
+ ESFDRILLDAPCSG GQRP S K++ SY +Q+KL A
Sbjct: 309 EPPFLPESFDRILLDAPCSGMGQRPNMACTWSL----KEVASYQPLQRKLFTAA------ 358
Query: 218 FDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDL 277
+ LLK +G+LVY TC++++ ENE +AW L + P ++L PQ+G +G+ L
Sbjct: 359 -----VQLLKPEGVLVYSTCTITLAENEEQVAWALTKFPCLQLQPQEPQIGGEGMRGAGL 413
Query: 278 EAEDQAVMQRFGPPLIP---TD---------------RNTDTIGFFICKLRK 311
E +QRF P +P TD N D+IGFFI K K
Sbjct: 414 SCEQLKQLQRFDPSAVPLPDTDMDSLREARREDMLRLANKDSIGFFIAKFVK 465
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 308 KLRKKY-GEAPEIYIHPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFA 366
+L+K++ G + I HP L D ++I P++ +++ + IV C AVLRGA V+A
Sbjct: 74 ELQKQFNGLSVPILQHPDLQDVLLI-PVIGPRKNIKRQQCEAIVGAQCGNAVLRGAHVYA 132
Query: 367 PGVLA 371
PG+++
Sbjct: 133 PGIVS 137
>gi|431917694|gb|ELK16959.1| Putative methyltransferase NSUN6 [Pteropus alecto]
Length = 460
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 110/294 (37%), Positives = 156/294 (53%), Gaps = 45/294 (15%)
Query: 43 FRGVAVEITNVLSQVPNV-ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLT 101
+G+ + +T + P+ + SS LQNLPS + H LD QPG+++LD+CAAPG K T
Sbjct: 176 LKGIGIRMTEPVYLSPSFDNVLSSYLFLQNLPSAVVTHVLDPQPGERILDLCAAPGGKTT 235
Query: 102 HIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMK- 160
HIA LM+D G +IALDK +V K+++ L L+SI+ +D T+ + ++R+K
Sbjct: 236 HIAALMHDQGEVIALDKISNKVKKIKQNALLLGLNSIRAFCFDGTK-----ALKLDRIKD 290
Query: 161 ------LQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRF 214
ESFDRILLDAPCSG GQRP + + K++ SY +Q+KL +
Sbjct: 291 TEGEPPFLPESFDRILLDAPCSGMGQRPNMACSWTL----KEVTSYQPLQRKLFTVAVK- 345
Query: 215 VSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAH 274
LLK G+LVY TC++++ ENE +AW L P ++L PQ+G KG+
Sbjct: 346 ----------LLKPGGVLVYSTCTITLAENEEQVAWALTEFPCLQLQPQEPQIGGKGMMG 395
Query: 275 KDLEAEDQAVMQRFGPPLIPTD-----------------RNTDTIGFFICKLRK 311
L E +QRF P ++P N D IGFFI K K
Sbjct: 396 AGLSFEQLKQLQRFDPSVVPLQDMDIESLRDASVDMIRLANKDCIGFFIAKFVK 449
Score = 38.1 bits (87), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 308 KLRKKY-GEAPEIYIHPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFA 366
+L+K++ G + I HP L D ++I P++ +++ + IV C AVLRGA V+
Sbjct: 74 ELQKQFNGLSVPILQHPDLQDVLLI-PVIGPRKNINKKQCEAIVGAQCGNAVLRGAHVYV 132
Query: 367 PGVLA 371
PG+++
Sbjct: 133 PGIVS 137
>gi|149743533|ref|XP_001497025.1| PREDICTED: putative methyltransferase NSUN6 [Equus caballus]
Length = 469
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 112/293 (38%), Positives = 159/293 (54%), Gaps = 42/293 (14%)
Query: 43 FRGVAVEITNVLSQVPNV-ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLT 101
+GV + +T + P+ + S LQNLPS LA H LD QPG+K+LD+CAAPG K T
Sbjct: 191 LKGVGIRMTEPVYLSPSFDKVLPSYIFLQNLPSALATHVLDPQPGEKILDLCAAPGGKTT 250
Query: 102 HIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKL 161
HIA LM+D G +IALDK +V K+++ L L+SI+ +D T+ + ++D+ +
Sbjct: 251 HIAALMHDQGEVIALDKISNKVEKIKQNALLLGLNSIRAFCFDGTK---ALKLDMVKNTE 307
Query: 162 QK-----ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVS 216
+ ESFDRILLDAPCSG GQRP + + K++ SY +Q+KL +
Sbjct: 308 GEPPFLPESFDRILLDAPCSGMGQRPNMACSWTL----KEVTSYQPLQRKLFTVAVK--- 360
Query: 217 LFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKD 276
LLK G+LVY TC++++ ENE +AW L P+++L P++G +G+
Sbjct: 361 --------LLKPGGVLVYSTCTITLAENEEQVAWALATFPDLQLQPQEPRIGGEGMMGAG 412
Query: 277 LEAEDQAVMQRFGPPLIP---TD---------------RNTDTIGFFICKLRK 311
L E +QRF P +P TD N D IGFFI K K
Sbjct: 413 LSLEQLKQLQRFDPSAVPLQDTDMDSLRDARIEDMVRLANNDCIGFFIAKFVK 465
Score = 38.5 bits (88), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 308 KLRKKY-GEAPEIYIHPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFA 366
+L+K++ G + + HP L D ++I P++ +++ + IV C AVLRGA V+
Sbjct: 74 ELQKQFNGLSVPVLQHPDLQDVLLI-PVIGPRKNIRKQQCEAIVGAQCGSAVLRGAHVYV 132
Query: 367 PGVLA 371
PG+++
Sbjct: 133 PGIVS 137
>gi|32698918|ref|NP_872349.1| putative methyltransferase NSUN6 [Homo sapiens]
gi|74751440|sp|Q8TEA1.1|NSUN6_HUMAN RecName: Full=Putative methyltransferase NSUN6; AltName:
Full=NOL1/NOP2/Sun and PUA domain-containing protein 1;
AltName: Full=NOL1/NOP2/Sun domain family member 6
gi|18676896|dbj|BAB85051.1| unnamed protein product [Homo sapiens]
gi|23272784|gb|AAH35778.1| NOL1/NOP2/Sun domain family, member 6 [Homo sapiens]
gi|119606597|gb|EAW86191.1| NOL1/NOP2/Sun domain family, member 6, isoform CRA_a [Homo sapiens]
gi|167887637|gb|ACA06032.1| NOL1/NOP2/Sun domain family, member 6 variant 1 [Homo sapiens]
gi|167887638|gb|ACA06033.1| NOL1/NOP2/Sun domain family, member 6 variant 2 [Homo sapiens]
gi|312150490|gb|ADQ31757.1| NOL1/NOP2/Sun domain family, member 6 [synthetic construct]
Length = 469
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 112/292 (38%), Positives = 157/292 (53%), Gaps = 40/292 (13%)
Query: 43 FRGVAVEITNVLSQVPNVALDSSMG---ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNK 99
+G+ + +T + P + DS + LQNLPS L H L+ QPG+K+LD+CAAPG K
Sbjct: 191 LKGMGIRMTEPVYLSP--SFDSVLPRYLFLQNLPSALVSHVLNPQPGEKILDLCAAPGGK 248
Query: 100 LTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERM 159
THIA LM+D G +IALDK +V K+++ L L+SI+ +D T+ ++
Sbjct: 249 TTHIAALMHDQGEVIALDKIFNKVEKIKQNALLLGLNSIRAFCFDGTKAVKLDMVEDTEG 308
Query: 160 K--LQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSL 217
+ ESFDRILLDAPCSG GQRP S K++ SY +Q+KL A
Sbjct: 309 EPPFLPESFDRILLDAPCSGMGQRPNMACTWSV----KEVASYQPLQRKLFTAA------ 358
Query: 218 FDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDL 277
+ LLK +G+LVY TC++++ ENE +AW L + P ++L PQ+G +G+ L
Sbjct: 359 -----VQLLKPEGVLVYSTCTITLAENEEQVAWALTKFPCLQLQPQEPQIGGEGMRGAGL 413
Query: 278 EAEDQAVMQRFGPPLIP---TD---------------RNTDTIGFFICKLRK 311
E +QRF P +P TD N D+IGFFI K K
Sbjct: 414 SCEQLKQLQRFDPSAVPLPDTDMDSLREARREDMLRLANKDSIGFFIAKFVK 465
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 308 KLRKKY-GEAPEIYIHPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFA 366
+L+K++ G + I HP L D ++I P++ +++ + IV C AVLRGA V+A
Sbjct: 74 ELQKQFNGLSVPILQHPDLQDVLLI-PVIGPRKNIKKQQCEAIVGAQCGNAVLRGAHVYA 132
Query: 367 PGVLA 371
PG+++
Sbjct: 133 PGIVS 137
>gi|349602997|gb|AEP98964.1| Putative methyltransferase NSUN6-like protein, partial [Equus
caballus]
Length = 444
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 113/294 (38%), Positives = 160/294 (54%), Gaps = 44/294 (14%)
Query: 43 FRGVAVEITNVLSQVPNV--ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKL 100
+GV + +T + P+ L S + LQNLPS LA H LD QPG+K+LD+CAAPG K
Sbjct: 166 LKGVGIRMTEPVYLSPSFDKVLPSCI-FLQNLPSALATHVLDPQPGEKILDLCAAPGGKT 224
Query: 101 THIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMK 160
THIA LM+D G +IALDK +V K+++ L L+SI+ +D T+ + ++D+ +
Sbjct: 225 THIAALMHDQGEVIALDKISNKVEKIKQNALLLGLNSIRAFCFDGTK---ALKLDMVKNT 281
Query: 161 LQK-----ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFV 215
+ ESFDRILLDAPCSG GQRP + + K++ SY +Q+KL +
Sbjct: 282 EGEPPFLPESFDRILLDAPCSGMGQRPNMACSWTL----KEVTSYQPLQRKLFTVAVK-- 335
Query: 216 SLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHK 275
LLK G+LVY TC++++ ENE +AW L P+++L P++G +G+
Sbjct: 336 ---------LLKPGGVLVYSTCTITLAENEEQVAWALATFPDLQLQPQEPRIGGEGMMGA 386
Query: 276 DLEAEDQAVMQRFGPPLIP---TD---------------RNTDTIGFFICKLRK 311
L E +QRF P +P TD N D IGFFI K K
Sbjct: 387 GLSLEQLKQLQRFDPSAVPLQDTDMDSLRDARIEDMVRLANNDCIGFFIAKFVK 440
Score = 38.5 bits (88), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 308 KLRKKY-GEAPEIYIHPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFA 366
+L+K++ G + + HP L D ++I P++ +++ + IV C AVLRGA V+
Sbjct: 49 ELQKQFNGLSVPVLQHPDLQDVLLI-PVIGPRKNIRKQQCEAIVGAQCGSAVLRGAHVYV 107
Query: 367 PGVLA 371
PG+++
Sbjct: 108 PGIVS 112
>gi|402879734|ref|XP_003903486.1| PREDICTED: putative methyltransferase NSUN6 [Papio anubis]
Length = 469
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 112/292 (38%), Positives = 158/292 (54%), Gaps = 40/292 (13%)
Query: 43 FRGVAVEITNVLSQVPNVALDSSMG---ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNK 99
+G+A+ +T + P + D+ + LQNLPS L H L+ QPG+K+LD+CAAPG K
Sbjct: 191 LKGMAIRMTEPVYLSP--SFDNVLPRYLFLQNLPSALVTHVLNPQPGEKILDLCAAPGGK 248
Query: 100 LTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERM 159
THIA LM+D G +IALDK +V K+++ L L+SI+ +D T+ ++
Sbjct: 249 TTHIAALMHDQGEVIALDKIFNKVEKIKQNALLLGLNSIRAFCFDGTKAVKLDMVEDTEG 308
Query: 160 K--LQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSL 217
+ ESFDRILLDAPCSG GQRP S K++ SY +Q+KL A
Sbjct: 309 EPPFLPESFDRILLDAPCSGMGQRPNMACTWSL----KELASYQPLQRKLFTA------- 357
Query: 218 FDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDL 277
+ LLK +G+LVY TC++++ ENE +AW L + P ++L PQ+G +G+ L
Sbjct: 358 ----AVQLLKPEGVLVYSTCTITLAENEEQVAWALTKFPCLQLQPQEPQIGGEGMRGAGL 413
Query: 278 EAEDQAVMQRFGPPLIP---TD---------------RNTDTIGFFICKLRK 311
E +QRF P +P TD N D+IGFFI K K
Sbjct: 414 SCEQLKQLQRFDPSAVPLPDTDMDSLREARREDMLRLANKDSIGFFIAKFVK 465
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 308 KLRKKY-GEAPEIYIHPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFA 366
+L+K++ G + I HP L D ++I P++ +++ + IV C AVLRGA V+A
Sbjct: 74 ELQKQFNGLSVPILQHPDLQDVLLI-PVIGPRKNIKKQQCEAIVGAQCGNAVLRGAHVYA 132
Query: 367 PGVLA 371
PG+++
Sbjct: 133 PGIVS 137
>gi|326429758|gb|EGD75328.1| Nsun6 protein [Salpingoeca sp. ATCC 50818]
Length = 477
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 108/292 (36%), Positives = 156/292 (53%), Gaps = 40/292 (13%)
Query: 40 DILFRGVAVEITNVLSQVPNVA-LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGN 98
D + G+ VE+ ++ Q P + LD S+ +LQNLPS +A H L QPG+ V+DMCAAPG
Sbjct: 202 DAVTSGLGVEMGDIEFQTPCLGHLDRSL-VLQNLPSCVASHVLAPQPGEHVVDMCAAPGG 260
Query: 99 KLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRI---------- 148
K HIA LMN+TG + A ++S R L + ++ + ++ D+ +
Sbjct: 261 KTAHIAALMNNTGRITAYERSTKRCAALVQWLETVGVTCCSVFKMDARKCCLQALPQSSP 320
Query: 149 -------NTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYA 201
++SS +E+ K+Q S DR+LLDAPC+G GQRP F +A + +
Sbjct: 321 SPSSSSLSSSSSQAVEKKKVQAGSVDRVLLDAPCTGLGQRPKFEHATPLTD----VIEAP 376
Query: 202 NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHP-EVEL 260
+ QKKL + + LLK G LVY TCS + EENE V+AW L P ++E+
Sbjct: 377 SFQKKLFRTA-----------VALLKPGGTLVYSTCSFNPEENEGVVAWALAEFPHDIEI 425
Query: 261 VQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKK 312
Q +P +G G+ ++ L E + +QRF P DTIGFFI K KK
Sbjct: 426 AQQVPYIGEAGVQYEGLSEEARQRVQRFTP-----SSTCDTIGFFIAKFIKK 472
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 322 HPHLNDCIV---IGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFAPGVLAMPLGKNS 378
HP L+D ++ IGP + + ++VD C AVLRG+DVF PG+ A G +S
Sbjct: 94 HPKLDDVLILPAIGPRRVVPDK---EGLFVVVDAACGAAVLRGSDVFVPGIRACSSGVHS 150
>gi|355708097|gb|AES03162.1| NOL1/NOP2/Sun domain family, member 6 [Mustela putorius furo]
Length = 437
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 111/291 (38%), Positives = 154/291 (52%), Gaps = 38/291 (13%)
Query: 43 FRGVAVEITNVLSQVPNV--ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKL 100
+G+ + +T + P+ L S + LQNLPS + H LD QPG+K+LD+CAAPG K
Sbjct: 159 LKGIGIRMTEPIYLSPSFDNVLPSYL-FLQNLPSAVVAHVLDPQPGEKILDLCAAPGGKT 217
Query: 101 THIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMK 160
THIA LM+D G +IALDK +V K+++ L L+SI+ +D T+ + K
Sbjct: 218 THIAALMHDQGEVIALDKISKKVEKIKQNALLLGLNSIKAFCFDGTKALKLDMVKDAEGK 277
Query: 161 --LQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLF 218
+SFDRILLDAPCSG GQRP + + K++ SY +Q+KL
Sbjct: 278 PPFLPDSFDRILLDAPCSGMGQRPNMACSWTL----KEVTSYPPLQRKLFTV-------- 325
Query: 219 DWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLE 278
+ LLK G+LVY TC++S+ ENE +AW L P ++L PQ+G +G+ L
Sbjct: 326 ---AVELLKPGGVLVYSTCTISLAENEEQVAWALRTFPYLQLQPQEPQIGGEGMMGAGLS 382
Query: 279 AEDQAVMQRFGPPLIP---TD---------------RNTDTIGFFICKLRK 311
E +QRF P ++P TD N D IGFFI K K
Sbjct: 383 LEQLKQLQRFDPSVVPLRDTDIDSLRDARIEDMIWLANKDCIGFFIAKFVK 433
>gi|31753229|gb|AAH53751.1| NOL1/NOP2/Sun domain family member 6 [Mus musculus]
Length = 476
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 112/291 (38%), Positives = 156/291 (53%), Gaps = 38/291 (13%)
Query: 43 FRGVAVEITNVLSQVPNV-ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLT 101
+G+ + +T + P+ + S LQNLPS + H LD QPG+K+L+MCAAPG K T
Sbjct: 191 LKGIGIRMTEPIYLSPSFDNVLPSYIFLQNLPSTVVAHVLDPQPGEKILEMCAAPGGKTT 250
Query: 102 HIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDST---RINTSSQIDIER 158
H A LM D G +IALDK +V KL++ L L SI+ +D+T +++T+ I+
Sbjct: 251 HTAALMQDKGEVIALDKILTKVNKLKQNASLLGLHSIRAFCFDATKALKLDTTDGIEGGP 310
Query: 159 MKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLF 218
L ESFDRI+LDAPCSG GQRP + K++ SY +Q+KLL
Sbjct: 311 PFL-PESFDRIILDAPCSGMGQRPNMACTWTL----KEVTSYQPLQRKLLHVA------- 358
Query: 219 DWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLE 278
+ LLK G+LVY TC++++ ENE +AW L P ++L PQ+G +G+ L
Sbjct: 359 ----VQLLKPGGVLVYSTCTITLAENEEQVAWALRTFPCLQLQPQEPQIGGEGMVGAGLT 414
Query: 279 AEDQAVMQRFGPPLIP-----TDR-------------NTDTIGFFICKLRK 311
E +QRF P ++P TD N D IGFFI K K
Sbjct: 415 LEQLKQLQRFDPSVVPLQNMDTDSLGEARREDMIWLANKDCIGFFIAKFLK 465
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 303 GFFICKLRKKYGEAP-EIYIHPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRG 361
G + +L+K++GE+ + HP L D ++I P+ +++ ++IV C AVLRG
Sbjct: 69 GLLLEELQKQFGESSIPVVQHPALPDVLLI-PMTGPRKNIERQQGEVIVGAQCGNAVLRG 127
Query: 362 ADVFAPGVLA 371
A V+ PG+++
Sbjct: 128 AHVYVPGIVS 137
>gi|410963274|ref|XP_003988190.1| PREDICTED: putative methyltransferase NSUN6 [Felis catus]
Length = 469
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 106/264 (40%), Positives = 143/264 (54%), Gaps = 35/264 (13%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
LQNLPS + H LD QPG+K+LD+CAAPG K THIA LM D G +IALDK +V K++
Sbjct: 217 FLQNLPSAVVTHVLDPQPGEKILDLCAAPGGKTTHIAALMRDQGEVIALDKISNKVEKIK 276
Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDIERMK--LQKESFDRILLDAPCSGFGQRPMFY 185
+ L L+SI+ +D T+ + K +ESFDRILLDAPCSG GQRP
Sbjct: 277 QNALLLGLNSIKAFCFDGTKALKLDMVKDAEGKPPFLRESFDRILLDAPCSGMGQRPNMA 336
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ + K++ SY +Q+KL + LLK G+LVY TC++++ ENE
Sbjct: 337 CSWTL----KEVTSYQPLQRKLFTV-----------AVELLKPGGVLVYSTCTITLAENE 381
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIP---TD------ 296
+AW L P ++L PQ+G +G+ L +E +QRF P ++P TD
Sbjct: 382 EQVAWALATFPCLQLQPQEPQIGGEGMMGAGLSSEQLKQLQRFDPSVVPVRDTDIASLGD 441
Query: 297 ---------RNTDTIGFFICKLRK 311
N D IGFFI K K
Sbjct: 442 ARIEDMIWLANKDCIGFFIAKFIK 465
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 308 KLRKKY-GEAPEIYIHPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFA 366
+LRK++ G + I HP L D ++I P++ +++ + +V C AVLRGA V+
Sbjct: 74 ELRKQFNGLSVPILQHPDLQDVLLI-PIIGPRRNIKKQQCEAVVGAQCGNAVLRGAHVYV 132
Query: 367 PGVLA 371
PG+++
Sbjct: 133 PGIVS 137
>gi|351705079|gb|EHB07998.1| Putative methyltransferase NSUN6 [Heterocephalus glaber]
Length = 476
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 115/291 (39%), Positives = 154/291 (52%), Gaps = 38/291 (13%)
Query: 43 FRGVAVEITNVLSQVPNV--ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKL 100
RG+ + +T + P+ L S + LQNLPS + H L+ QPG+K+LD+CAAPG K
Sbjct: 191 LRGIGIRMTEPIYLSPSFDNVLPSYL-FLQNLPSAVVTHVLNPQPGEKILDLCAAPGGKT 249
Query: 101 THIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQI-DIERM 159
THIA LM+D G +IALDK +V K+++ L L+SI+ +D T+ +I D E
Sbjct: 250 THIAALMHDQGEVIALDKIANKVEKIKQNALLLGLNSIKAFCFDGTKALKLDEIEDTEGT 309
Query: 160 -KLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLF 218
ESFDRILLDAPCSG GQRP + K++ SY +Q+KL
Sbjct: 310 PPFSPESFDRILLDAPCSGMGQRPNMACTWTL----KEVTSYQPLQRKLFPVA------- 358
Query: 219 DWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLE 278
+ LLK G LVY TC++++EENE +AW L P ++L PQ+G +G+ L
Sbjct: 359 ----VQLLKPGGTLVYSTCTVTLEENEEQVAWALSTFPCLQLQPQEPQIGGEGMMGAGLS 414
Query: 279 AEDQAVMQRFGP---PLIPTD---------------RNTDTIGFFICKLRK 311
E +QRF P PL TD N D IGFFI K K
Sbjct: 415 GEQLRQLQRFDPSTTPLRDTDLETLRDARAEDMIRLANKDCIGFFIAKFLK 465
Score = 38.1 bits (87), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 322 HPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFAPGVLA 371
HP L D ++I P++ +++ + +V C AVLRGA V+ PG+++
Sbjct: 89 HPDLQDVLLI-PVIGPRKNIKRQQCEAVVGAQCGSAVLRGAHVYTPGIVS 137
>gi|332217198|ref|XP_003257743.1| PREDICTED: putative methyltransferase NSUN6 [Nomascus leucogenys]
Length = 469
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 109/267 (40%), Positives = 146/267 (54%), Gaps = 41/267 (15%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
LQNLPS L H L+ QPG+K+LD+CAAPG K THIA LM+D G +IALDK +V K++
Sbjct: 217 FLQNLPSALVTHVLNPQPGEKILDLCAAPGGKTTHIAALMHDQGEVIALDKIFNKVEKIK 276
Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDI-----ERMKLQKESFDRILLDAPCSGFGQRP 182
+ L L+SI+ +D T+ + ++DI ESFDRILLDAPCSG GQRP
Sbjct: 277 QNALLLGLNSIRAFCFDGTK---AVKLDIVEDTEGEPPFLPESFDRILLDAPCSGMGQRP 333
Query: 183 MFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVE 242
S K++ SY +Q+KL A + LLK +G+LVY TC++++
Sbjct: 334 NMACTWSL----KEVASYQPLQRKLFTA-----------AVQLLKPEGVLVYSTCTITLA 378
Query: 243 ENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIP---TD--- 296
ENE +AW L + P + L PQ+G +G+ L E +QRF P +P TD
Sbjct: 379 ENEEQVAWALTKFPCLRLQPQEPQIGGEGMRGAGLSCEQLKQLQRFDPSAVPLPDTDVDS 438
Query: 297 ------------RNTDTIGFFICKLRK 311
N D+IGFFI K K
Sbjct: 439 LREARREDMLRLANKDSIGFFIAKFVK 465
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 308 KLRKKY-GEAPEIYIHPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFA 366
+L+K++ G + I HP L D ++I P++ +++ + IV C AVLRGA V+A
Sbjct: 74 ELQKQFNGLSVPILQHPDLQDVLLI-PVIGPRKNIKKQQCEAIVGAQCGNAVLRGAHVYA 132
Query: 367 PGVLA 371
PG+++
Sbjct: 133 PGIVS 137
>gi|156375011|ref|XP_001629876.1| predicted protein [Nematostella vectensis]
gi|156216886|gb|EDO37813.1| predicted protein [Nematostella vectensis]
Length = 491
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 102/277 (36%), Positives = 154/277 (55%), Gaps = 26/277 (9%)
Query: 45 GVAVEITNVLSQVPNVA-LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHI 103
G+AV + L P+++ + + + LQNLPS + GH L Q G+ VLDMCAAPG K HI
Sbjct: 230 GIAVRMCQPLYDCPSLSGVLTDVLFLQNLPSAVVGHILGPQSGESVLDMCAAPGGKTCHI 289
Query: 104 ALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR------INTSSQIDIE 157
A LM + G ++A DKS+P++ K+ + ++S ++THV D+++ +S +
Sbjct: 290 AALMKNKGLIVAFDKSQPKIQKIIANCEMQKVSIVKTHVIDASKALDTKAAPSSRDVSTT 349
Query: 158 RMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLD-KKIKSYANIQKKLLQAVYRFVS 216
E+FDRILLDAPCS GQRP S +++ K+++S+ +Q+K+ +
Sbjct: 350 SPPYPPEAFDRILLDAPCSALGQRP-----QSVVHMKLKELQSFPKLQRKIFSSA----- 399
Query: 217 LFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKD 276
+ LL+ G LVY TC+++ EENE +AW L P + LV +P LG G
Sbjct: 400 ------VGLLRPGGTLVYSTCTITPEENEKQVAWALRSFPGLRLVPQVPHLGGPGFPDCG 453
Query: 277 LEAEDQAVMQRFGPPLIPTDR--NTDTIGFFICKLRK 311
L D+ ++QRF P + + DTIGFFI K K
Sbjct: 454 LSDHDRGLVQRFDPTRSSVEPCCDVDTIGFFIAKFVK 490
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 42/77 (54%), Gaps = 11/77 (14%)
Query: 309 LRKKYGEAP----EIYIHPHLNDCIVI---GPLLKLSQSVVHHPVQIIVDQPCALAVLRG 361
L K+Y E E+ +H L D +VI GP L L + H QIIVD C AVLRG
Sbjct: 108 LLKQYSERERPCLEVTVHHSLPDVLVIKGSGPHLDLPK----HTKQIIVDTHCGTAVLRG 163
Query: 362 ADVFAPGVLAMPLGKNS 378
ADVFAPGV+ G S
Sbjct: 164 ADVFAPGVIGAHPGIQS 180
>gi|118085726|ref|XP_425980.2| PREDICTED: putative methyltransferase NSUN6 [Gallus gallus]
Length = 469
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 110/300 (36%), Positives = 161/300 (53%), Gaps = 36/300 (12%)
Query: 37 YALDILFRGVAVEITNVLSQVPNV-ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAA 95
+ L+ G+ V +T + P+ ++ S LQNLPS++ H L+ QPG+++LDMCAA
Sbjct: 185 FGLNGRTTGLGVRMTEPVYLSPSFESVLPSHLFLQNLPSVVVSHVLNPQPGERILDMCAA 244
Query: 96 PGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR-INTSSQI 154
PG K TH+A LM+D G +IA+DK +V K+++ + LQL+ I+ YD T+ ++ +
Sbjct: 245 PGGKTTHLATLMHDQGEVIAMDKIANKVKKIKQNAELLQLNCIKAFCYDGTKALSVEKRE 304
Query: 155 DI-ERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYR 213
D E ESFDRILLDAPCSG GQRP +++ K++ SY +Q+KL
Sbjct: 305 DKQEEPPFLPESFDRILLDAPCSGMGQRPNMAYSSTL----KEVTSYQPLQRKLFTVA-- 358
Query: 214 FVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLA 273
+ LLK G+LVY TC++++ ENE +AW L P ++L P +G +G+
Sbjct: 359 ---------VKLLKPGGVLVYSTCTITLSENEEQVAWALETFPCLQLQPQEPHIGGEGMR 409
Query: 274 HKDLEAEDQAVMQRFGPP---LIPTD---------------RNTDTIGFFICKLRKKYGE 315
L ++QRF P L TD N D IGFFI K K G+
Sbjct: 410 GAGLALHQLKLLQRFDPSAGTLQGTDMESLQDCREEDLVSLANKDCIGFFIAKFMKLKGK 469
Score = 44.7 bits (104), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 58/112 (51%), Gaps = 10/112 (8%)
Query: 269 MKGLAHKDLEAEDQAVMQRFG-PPLIPTDR-NTDTIG------FFICKLRKKY-GEAPEI 319
+ L K+ E++ Q+++ PP I T R NT+ + +++K++ G +
Sbjct: 27 ITALGTKEAESKYQSLLSHLSHPPAITTVRVNTNLASVRHVKKLLLEEIQKQFQGICVPV 86
Query: 320 YIHPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFAPGVLA 371
HP L D ++I P + + + H ++IV C AVLRGA V+ PG+++
Sbjct: 87 LEHPQLRDILLI-PSIGPRKDLKKHESEVIVGAQCGYAVLRGAHVYVPGIIS 137
>gi|224044808|ref|XP_002192436.1| PREDICTED: putative methyltransferase NSUN6 [Taeniopygia guttata]
Length = 469
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 101/264 (38%), Positives = 144/264 (54%), Gaps = 35/264 (13%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
LQNLPS++ H L+ QPG+K+LDMCAAPG K THIA LM+D G +IA+DK +V K++
Sbjct: 217 FLQNLPSVVVSHVLNPQPGEKILDMCAAPGGKTTHIAALMHDQGEVIAMDKIANKVKKIK 276
Query: 128 ETIKKLQLSSIQTHVYDSTR--INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFY 185
+ + LQL+ I+ YD T+ + ++ E ESFDRILLDAPCSG GQRP
Sbjct: 277 QNAEFLQLNCIKAFCYDGTKALLVEKTEDKQEGPPFLPESFDRILLDAPCSGMGQRPNMA 336
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+++ K++ SY +Q+KL + LLK G+LVY TC++++ ENE
Sbjct: 337 YSSTL----KEVTSYQPLQRKLFTVAVK-----------LLKPGGVLVYSTCTITLSENE 381
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIP----------- 294
+AW L P ++L P +G +G+ L + ++QRF P +
Sbjct: 382 EQVAWALKTFPCLQLHPQEPHIGGEGMKGAGLSLDQLKLLQRFDPSAVTLRGMDINSLQD 441
Query: 295 -------TDRNTDTIGFFICKLRK 311
+ N D IGFFI K K
Sbjct: 442 SREDDLISLANKDCIGFFIAKFIK 465
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 322 HPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFAPGVLA 371
HP L D ++I P++ + H ++IV C AVLRGA V+ PG+++
Sbjct: 89 HPKLQDILLI-PVIGPRPDLKKHASEVIVGAQCGYAVLRGAHVYVPGIVS 137
>gi|449270283|gb|EMC80975.1| Putative methyltransferase NSUN6 [Columba livia]
Length = 469
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 100/264 (37%), Positives = 145/264 (54%), Gaps = 35/264 (13%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
LQNLPS++ H L+ QPG+++LDMCAAPG K TH+A LM+D G +IA+DK+ +V K++
Sbjct: 217 FLQNLPSVVVSHILNPQPGERILDMCAAPGGKTTHLAALMHDQGEVIAMDKTANKVKKIK 276
Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDIERMK--LQKESFDRILLDAPCSGFGQRPMFY 185
+ + LQL+ I+T YD T+ + + + E+ ESFDRILLDAPCSG GQRP
Sbjct: 277 QNAELLQLNCIKTFCYDGTKALSVEKREDEQDGPPFSPESFDRILLDAPCSGMGQRPNMA 336
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+++ K++ S +Q+KL + LLK GILVY TC++++ ENE
Sbjct: 337 YSSTL----KEVTSSQPLQRKLFTVAVK-----------LLKPGGILVYSTCTITLSENE 381
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTD--------- 296
+AW L P ++L P +G +G+ L + ++QRF P +
Sbjct: 382 EQVAWALKTFPCLQLQPQEPHVGGEGMRGAGLSLDQLKLLQRFDPSAVTLQGMDINSLED 441
Query: 297 ---------RNTDTIGFFICKLRK 311
N D IGFFI K K
Sbjct: 442 SREDDLISLANKDCIGFFIAKFIK 465
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 10/110 (9%)
Query: 271 GLAHKDLEAEDQAVMQRFG-PPLIPTDR-NT------DTIGFFICKLRKKY-GEAPEIYI 321
L ++ E + Q+++ R PP T R NT + +++K++ G +
Sbjct: 29 ALGTQEAECKYQSLLSRLSHPPSFTTVRVNTHLASVKNVKKLLFEEIQKQFKGLCVPVLE 88
Query: 322 HPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFAPGVLA 371
HP L+D ++I P++ + + H ++IV C AVLRGA V+ PG+++
Sbjct: 89 HPKLHDILLI-PVIGPRRDLKKHASEVIVGAQCGYAVLRGAHVYVPGIIS 137
>gi|357604419|gb|EHJ64179.1| hypothetical protein KGM_18459 [Danaus plexippus]
Length = 421
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 99/276 (35%), Positives = 161/276 (58%), Gaps = 26/276 (9%)
Query: 45 GVAVEITNVLSQVPNVALDSSMG-----ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNK 99
G+A+E S++P ++ SM +LQNLPSI+ G ++ QP + +LDMCA+PGNK
Sbjct: 157 GIAIETLLPASRLP--VINESMYPKGHLVLQNLPSIITGWVVNAQPNEHILDMCASPGNK 214
Query: 100 LTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERM 159
TH+A + N+ + A+DK+ +V K+ ++ + ++ + T +DST+ ++ + +
Sbjct: 215 TTHLAEMSNNQAHITAIDKTDKKVIKIRQSCETQGVTCVHTFAFDSTKCHSDEANNEKGP 274
Query: 160 KLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFD 219
+ +FD++LLDAPCSG GQRP+ N + K ++SY +Q+K LFD
Sbjct: 275 PYKSNTFDKVLLDAPCSGLGQRPLLNNKMTA----KMLQSYKFVQRK----------LFD 320
Query: 220 WQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEA 279
+ +LK G LVY TC+++VEENE +++W+L ++ +EL+ P G G + L
Sbjct: 321 -SAVKVLKVGGKLVYSTCTVTVEENEGMVSWVLDKYSCMELIPAEPLHGGPGQPNVGLND 379
Query: 280 EDQAVMQRFGP---PLIPT-DRNTDTIGFFICKLRK 311
+ + ++QRFGP PL P D +TIGFFI K
Sbjct: 380 QQRVMVQRFGPDNDPLRPVEDLYRNTIGFFIAAFTK 415
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 23/28 (82%)
Query: 346 VQIIVDQPCALAVLRGADVFAPGVLAMP 373
++++VD CA AVLRGA V+APGVL +P
Sbjct: 75 IEVVVDSMCAAAVLRGAHVYAPGVLGLP 102
>gi|380789539|gb|AFE66645.1| putative methyltransferase NSUN6 [Macaca mulatta]
Length = 469
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 105/264 (39%), Positives = 144/264 (54%), Gaps = 35/264 (13%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
LQNLPS L H L+ QPG+K+LD+CAAPG K THIA LM+D G +IA+DK +V K++
Sbjct: 217 FLQNLPSALVTHVLNPQPGEKILDLCAAPGGKTTHIAALMHDQGEVIAMDKIFSKVEKIK 276
Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDIERMK--LQKESFDRILLDAPCSGFGQRPMFY 185
+ L L+SI+ +D T+ ++ + ESFDRILLDAPCSG GQRP
Sbjct: 277 QNALLLGLNSIRAFCFDGTKAVKLDMVEDTEGEPPFLPESFDRILLDAPCSGMGQRPNMA 336
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
S K++ SY +Q+KL A + LLK +G+LVY TC++++ ENE
Sbjct: 337 CTWSL----KELASYQPLQRKLFTAA-----------VQLLKPEGVLVYSTCTITLAENE 381
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIP---TD------ 296
+AW L + P ++L P +G +G+ L E +QRF P +P TD
Sbjct: 382 EQVAWALTKFPCLQLQPQEPHIGGEGMRGAGLSCEQLKQLQRFDPSAVPLPDTDMDSLRE 441
Query: 297 ---------RNTDTIGFFICKLRK 311
N D+IGFFI K K
Sbjct: 442 ARREDMLRLANKDSIGFFIAKFIK 465
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 308 KLRKKY-GEAPEIYIHPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFA 366
+L+K++ G + I HP L D ++I P++ +++ + IV C AVLRGA V+A
Sbjct: 74 ELQKQFNGLSVPILQHPDLQDVLLI-PVIGPRKNIKKQQCEAIVGAQCGNAVLRGAHVYA 132
Query: 367 PGVLA 371
PG+++
Sbjct: 133 PGIVS 137
>gi|444706028|gb|ELW47391.1| Putative methyltransferase NSUN6 [Tupaia chinensis]
Length = 476
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 106/264 (40%), Positives = 143/264 (54%), Gaps = 35/264 (13%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
LQNLPS + H L+ QPG+K+LD+CAAPG K THIA LM+D G +IALDK +V K++
Sbjct: 217 FLQNLPSAVVTHVLNPQPGEKILDLCAAPGGKTTHIAALMHDQGEVIALDKIPNKVEKIK 276
Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDIERMK--LQKESFDRILLDAPCSGFGQRPMFY 185
+ L+L SI+ +D T+ ++ + K ESFDRILLDAPCSG GQRP
Sbjct: 277 KNASLLKLHSIRAFCFDGTKALKLDMVEDTKGKPPFLPESFDRILLDAPCSGMGQRPNMA 336
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ K++ SY +Q+KL + LLK GILVY TC++++ ENE
Sbjct: 337 CGWTL----KEVTSYQPLQRKLFTVA-----------VQLLKPGGILVYSTCTVTLAENE 381
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIP---TD------ 296
+AW L P ++L PQ+G +G+ L E +QRF P ++P TD
Sbjct: 382 EQVAWALTTFPCLQLQPQDPQIGGEGMLGAGLSFEQLKQLQRFDPSVVPLQNTDIGSLRD 441
Query: 297 ---------RNTDTIGFFICKLRK 311
N D IGFFI K K
Sbjct: 442 ARTEDMIWLANKDCIGFFIAKFMK 465
>gi|346467711|gb|AEO33700.1| hypothetical protein [Amblyomma maculatum]
Length = 427
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 97/219 (44%), Positives = 130/219 (59%), Gaps = 20/219 (9%)
Query: 45 GVAVEITNVLSQVPNVA-LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHI 103
G AV +T +S P + L+ S LQNLPS L GH LD +PG VLDMCAAPG K TH+
Sbjct: 204 GCAVRMTEPVSGCPPLGGLEPSRLFLQNLPSALCGHILDPKPGDAVLDMCAAPGGKTTHL 263
Query: 104 ALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK 163
A LMNDTG ++ALD+S+ RV ++ ++ ++S +++ +D+ ++ Q I+
Sbjct: 264 ATLMNDTGLVVALDRSENRVARVRNNCERWKISCVRSFAHDANEFDSLPQQGID----LP 319
Query: 164 ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGI 223
FDRILLDAPCS G RP S+ K + SY QK LL+ R
Sbjct: 320 NCFDRILLDAPCSALGGRPRL----SYEQSAKAVDSYPPQQKALLETAVR---------- 365
Query: 224 PLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQ 262
LLK G+L+Y TCSLS ENEAV+AW LHR P++ LV+
Sbjct: 366 -LLKPGGLLLYSTCSLSTAENEAVVAWALHRFPQICLVR 403
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 309 LRKKYGE-APEIYIHPHLNDCIVIGPLLKLSQSVVHHPV--QIIVDQPCALAVLRGADVF 365
+ + +G+ APE+ HP + D ++ L S P +++V + CA AVLRGA V+
Sbjct: 86 MTESHGDLAPEVICHPSIPDLLI---LSGRQSSANLQPTLREVVVRRDCAEAVLRGAHVY 142
Query: 366 APGVLAMPLG 375
PG++ P G
Sbjct: 143 IPGIMGAPKG 152
>gi|443731167|gb|ELU16404.1| hypothetical protein CAPTEDRAFT_182050 [Capitella teleta]
Length = 426
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 96/269 (35%), Positives = 154/269 (57%), Gaps = 17/269 (6%)
Query: 45 GVAVEITNVLSQVPNVA-LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHI 103
G+A+++ L + P+++ + S+ QNLPS+L H L+ QPGQ ++D+CAAPG K H+
Sbjct: 169 GMAIQMNQPLYEAPSLSGILPSLVFPQNLPSVLCSHVLNPQPGQTIIDLCAAPGGKTVHL 228
Query: 104 ALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK 163
A LM + G ++ALDK+ +++K+ K+ LS I+ + +D++ S+
Sbjct: 229 ASLMKNQGRVVALDKTSGKISKVLSNAKEWGLSCIEAYAFDASGSCCSTSDTEGPPPYPP 288
Query: 164 ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGI 223
SFD +LLDAPCS GQRP N+ +++ SY +Q+K+ + +
Sbjct: 289 LSFDHVLLDAPCSALGQRPSAANSMRV----REVSSYPVLQRKIFT-----------EAV 333
Query: 224 PLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQA 283
LL+ G LV+ TC+++ EENE +AW L + P++ LV P LG G + L+ E +
Sbjct: 334 ALLRDGGTLVFSTCTVTAEENEQQVAWALRKFPQLTLVAQEPYLGGPGRPGQGLDEEQRR 393
Query: 284 VMQRFGPPLIPTDR-NTDTIGFFICKLRK 311
++QRF P I D+ ++D IGFFI K K
Sbjct: 394 MVQRFDPGNIAFDQVDSDCIGFFIAKFIK 422
Score = 38.5 bits (88), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 11/72 (15%)
Query: 309 LRKKY--GEAPEIYIHPH--LNDCIVI---GPLLKLSQSVVHHPVQIIVDQPCALAVLRG 361
L+K+Y + + I PH L D + I GP L+L Q ++++V C +AVLRG
Sbjct: 47 LKKQYESKDMEPLPIVPHCCLRDALYIKHRGPRLELPQ----LQLKVVVGVACGMAVLRG 102
Query: 362 ADVFAPGVLAMP 373
ADVFA G+ P
Sbjct: 103 ADVFAQGITGAP 114
>gi|326921692|ref|XP_003207090.1| PREDICTED: putative methyltransferase NSUN6-like [Meleagris
gallopavo]
Length = 469
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 111/299 (37%), Positives = 159/299 (53%), Gaps = 50/299 (16%)
Query: 45 GVAVEITNVLSQVPNVALDS---SMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLT 101
G+ V +T + P + DS S LQNLPS++ H L+ QPG+++LDMCAAPG K T
Sbjct: 193 GLGVRMTEPVYLSP--SFDSVLPSHLFLQNLPSVVVSHVLNPQPGERILDMCAAPGGKTT 250
Query: 102 HIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKL 161
H+A LM D G +IA+DK +V K+++ + LQL+ I+ YD T+ + +E+ +
Sbjct: 251 HLATLMRDQGEVIAMDKIANKVKKIKQNAELLQLNCIKAFCYDGTKA-----LSVEKRED 305
Query: 162 QK-------ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRF 214
++ ESFDRILLDAPCSG GQRP +++ K++ SY +Q+KL
Sbjct: 306 KQEGPPFLPESFDRILLDAPCSGMGQRPNMAYSSTL----KEVTSYQPLQRKLFTVA--- 358
Query: 215 VSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAH 274
+ LLK GILVY TC++++ ENE +AW L P ++L P +G +G+
Sbjct: 359 --------VKLLKPGGILVYSTCTITLSENEEQVAWALETFPCLQLQPQEPHIGGEGMRG 410
Query: 275 KDLEAEDQAVMQRFGPP---LIPTD---------------RNTDTIGFFICKLRKKYGE 315
L ++QRF P L TD N D IGFFI K K G+
Sbjct: 411 AGLALHQLKLLQRFDPSAGTLQGTDMESLQDCREEDLVSLANKDCIGFFIAKFMKLKGK 469
Score = 45.1 bits (105), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 58/112 (51%), Gaps = 10/112 (8%)
Query: 269 MKGLAHKDLEAEDQAVMQRFG-PPLIPTDR-NTDTIG------FFICKLRKKY-GEAPEI 319
+ L K+ E++ Q+++ PP I T R NT+ + +++K++ G +
Sbjct: 27 ITALGTKEAESKYQSLLSHLSHPPAITTVRVNTNLASVKHVKKLLLEEIQKQFKGTRVPV 86
Query: 320 YIHPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFAPGVLA 371
HP L D ++I P + Q + + ++IV C AVLRGA V+ PG+++
Sbjct: 87 LEHPQLRDILLI-PAIGPRQDLKKYESEVIVGAQCGYAVLRGAHVYVPGIIS 137
>gi|359318915|ref|XP_003638939.1| PREDICTED: putative methyltransferase NSUN6-like [Canis lupus
familiaris]
Length = 469
Score = 174 bits (442), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 105/264 (39%), Positives = 141/264 (53%), Gaps = 35/264 (13%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
LQNLPS + H LD QPG+K+LD+CAAPG K THIA LM D G +IALDK +V K++
Sbjct: 217 FLQNLPSAVVTHVLDPQPGEKILDLCAAPGGKTTHIAALMRDQGEVIALDKISNKVEKIK 276
Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDIERMK--LQKESFDRILLDAPCSGFGQRPMFY 185
+ L L+SI+ +D T+ ++ ESFDRILLDAPCSG GQRP
Sbjct: 277 QNALLLGLNSIKAFCFDGTKALKFDMVEKAEGNPPFLPESFDRILLDAPCSGMGQRPNMA 336
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ + K++ SY +Q+KL + LLK G+LVY TC++++ ENE
Sbjct: 337 CSWTL----KEVTSYQPLQRKLFTVA-----------VQLLKPGGVLVYSTCTITLAENE 381
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIP---TD------ 296
+AW L P ++L PQ+G +G+ L E +QRF P ++P TD
Sbjct: 382 EQVAWALRTFPCLQLQPQDPQIGGEGMMGAGLSFEQLKQLQRFDPSVVPSWDTDIDSLRD 441
Query: 297 ---------RNTDTIGFFICKLRK 311
N D IGFFI K K
Sbjct: 442 ARIEDMIGLANKDCIGFFIAKFIK 465
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 308 KLRKKY-GEAPEIYIHPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFA 366
+L+K++ G + I HP L D ++I P++ +++ + IV C AVLRGA V+
Sbjct: 74 ELQKQFNGLSVPILQHPDLQDVLLI-PVIGPRKNIKRQRCEAIVGAQCGNAVLRGAHVYV 132
Query: 367 PGVLA 371
PG+++
Sbjct: 133 PGIVS 137
>gi|344277638|ref|XP_003410607.1| PREDICTED: putative methyltransferase NSUN6 [Loxodonta africana]
Length = 469
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 111/296 (37%), Positives = 156/296 (52%), Gaps = 48/296 (16%)
Query: 43 FRGVAVEITNVLSQVPNV--ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKL 100
+G+ + +T + P+ L S + LQNLPS + H L+ QPG+K+LD+CAAPG K
Sbjct: 191 LKGIGIRMTEPVYLSPSFDNVLPSYL-FLQNLPSAVVAHVLNPQPGEKILDLCAAPGGKT 249
Query: 101 THIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMK 160
THIA LM+D G +IALDK +V K+++ L L+SI+ +D T+ + IE +
Sbjct: 250 THIAALMHDQGEVIALDKISSKVEKIKQNALLLGLNSIRAFCFDGTK-----ALQIEMFE 304
Query: 161 -------LQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYR 213
ESFDRILLDAPCSG GQRP + K++ SY +Q+KL
Sbjct: 305 DTEGNPPFLPESFDRILLDAPCSGMGQRPNMACTWTL----KEVTSYQPLQRKLFSVA-- 358
Query: 214 FVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLA 273
+ LLK G+LVY TC++++ ENE +AW L P ++L PQ+G +G+
Sbjct: 359 ---------VQLLKPGGVLVYSTCTITLAENEEQVAWALRTFPCLQLQPQEPQIGGEGMM 409
Query: 274 HKDLEAEDQAVMQRFGPPLIP---TDRNT---------------DTIGFFICKLRK 311
L E +QRF P ++P TD N+ D IGFFI K K
Sbjct: 410 GAGLSFEQLKQLQRFDPSVVPLPDTDINSLGDTRTEDMIWLANKDCIGFFIAKFVK 465
>gi|301783221|ref|XP_002927025.1| PREDICTED: putative methyltransferase NSUN6-like [Ailuropoda
melanoleuca]
Length = 469
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 105/267 (39%), Positives = 146/267 (54%), Gaps = 41/267 (15%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
LQNLPS + H L+ QPG+K+LD+CAAPG K THIA LM D G +IALDK +V K++
Sbjct: 217 FLQNLPSAVVTHVLNPQPGEKILDLCAAPGGKTTHIAALMRDQGEVIALDKIPNKVEKIK 276
Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK-----ESFDRILLDAPCSGFGQRP 182
+ L L+SI+ +D T+ + Q+D+ + K ESFDR+LLDAPCSG GQRP
Sbjct: 277 QNALLLGLNSIKAFCFDGTK---ALQLDMVKDAEGKPPFLPESFDRVLLDAPCSGMGQRP 333
Query: 183 MFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVE 242
+ + K++ SY +Q+KL + LL+ G+LVY TC++++
Sbjct: 334 NMACSWTL----KEVTSYQPLQRKLFTV-----------AVELLRPGGVLVYSTCTITLA 378
Query: 243 ENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIP---TD--- 296
ENE +AW L P ++L PQ+G +G+ L E +QRF P ++P TD
Sbjct: 379 ENEEQVAWALRTFPYLQLQPQEPQIGGEGMMGAGLAFEQLKQLQRFDPSVVPLRDTDIDS 438
Query: 297 ------------RNTDTIGFFICKLRK 311
N D IGFFI K K
Sbjct: 439 LRDARVEDMIWLANKDCIGFFIAKFIK 465
>gi|395539982|ref|XP_003771941.1| PREDICTED: putative methyltransferase NSUN6 [Sarcophilus harrisii]
Length = 469
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 157/298 (52%), Gaps = 40/298 (13%)
Query: 37 YALDILFRGVAVEITNVLSQVPNV-ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAA 95
++L +G+ + +T + P+ + SS LQNLPS + H L+ QPG+K+LDMCAA
Sbjct: 185 FSLSSPLKGIGIRMTEPVYLSPSFDNVLSSALFLQNLPSAVVSHVLNPQPGEKILDMCAA 244
Query: 96 PGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQID 155
PG K THIA LM+D G +IALDK +V K+++ L L+ I+ Y+ T+ +++
Sbjct: 245 PGGKTTHIAALMHDQGEVIALDKIPNKVEKIKQNAALLHLNCIRAFCYNGTK--ALGKVE 302
Query: 156 IERMK----LQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAV 211
++ ESFDRILLDAPCSG GQRP ++ K++ SY +Q+KL
Sbjct: 303 NGQVTGGPPFSPESFDRILLDAPCSGMGQRPNM----AYTWTLKEVTSYQPLQRKLFTV- 357
Query: 212 YRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKG 271
+ LLK G+LVY TC++++ ENE +AW L P ++L P +G G
Sbjct: 358 ----------AVQLLKPGGVLVYSTCTVTLAENEEQVAWALKAFPCLQLQPQEPHVGGPG 407
Query: 272 LAHKDLEAEDQAVMQRFGPPLIP---TD---------------RNTDTIGFFICKLRK 311
+ L + +QRF P +IP TD N D IGFFI K K
Sbjct: 408 MVGAGLSLDQLKQLQRFDPSIIPLKGTDITSVRNASREDMIWLANKDCIGFFIAKFVK 465
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 319 IYIHPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFAPGVLA 371
I HP + D ++I P++ +++ P ++IV C AVLRGA V+ PG+++
Sbjct: 86 ILQHPDVWDMLLI-PVIGPRKNINKQPSEVIVGAHCGNAVLRGAHVYVPGIMS 137
>gi|291402236|ref|XP_002717453.1| PREDICTED: NOL1/NOP2/Sun domain family, member 6 [Oryctolagus
cuniculus]
Length = 469
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 111/291 (38%), Positives = 156/291 (53%), Gaps = 38/291 (13%)
Query: 43 FRGVAVEITNVLSQVPNV-ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLT 101
+G+ + +T + P+ + SS LQNLPS + H L+ QPG+K+LD+CAAPG K T
Sbjct: 191 LKGIGIRMTEPVYLSPSFDNVLSSYLYLQNLPSAVVTHVLNPQPGEKILDLCAAPGGKTT 250
Query: 102 HIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDST---RINTSSQIDIER 158
HIA LM+D G +IALDK +V K+++ L L+SI+ +D T +++ S + E
Sbjct: 251 HIAALMHDQGEVIALDKISNKVEKIKQNALLLGLNSIRAFCFDGTKALKLDMSQDTEGEP 310
Query: 159 MKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLF 218
L ESFDRILLDAPCSG GQRP + K++ SY +Q+KL
Sbjct: 311 PFL-PESFDRILLDAPCSGMGQRPNMACTWTL----KEVTSYQPLQRKLFTV-------- 357
Query: 219 DWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLE 278
+ LLK G+LVY TC++++ ENE +AW L P ++L P +G +G+ L
Sbjct: 358 ---AVQLLKPGGVLVYSTCTVTLAENEEQVAWALATFPCLQLQPQEPLIGGEGMVGAGLS 414
Query: 279 AEDQAVMQRFGPPLIP---TD---------------RNTDTIGFFICKLRK 311
E +QRF P ++P TD N D IGFFI K K
Sbjct: 415 LEQLKQLQRFDPSVVPLQDTDIDSFKNARMEDMIWLANKDCIGFFIAKFVK 465
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 55/108 (50%), Gaps = 10/108 (9%)
Query: 273 AHKDLEAEDQAVMQRFG-PPLIPTDRNTDTIGFFIC-------KLRKKY-GEAPEIYIHP 323
++ E + + ++ R PP T R + C +L+K++ G + ++ HP
Sbjct: 31 GKQEAERKFETLLNRLSHPPSFTTVRVNTHLASIQCVKNLLHDELQKQFNGLSVPVFQHP 90
Query: 324 HLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFAPGVLA 371
L D ++I P++ +++ +++V C AVLRGA ++ PG++A
Sbjct: 91 DLQDVLLI-PVVGPRKNIKKQQCEVVVGAQCGNAVLRGAHIYVPGIVA 137
>gi|270013278|gb|EFA09726.1| hypothetical protein TcasGA2_TC011859 [Tribolium castaneum]
Length = 425
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 103/272 (37%), Positives = 154/272 (56%), Gaps = 35/272 (12%)
Query: 45 GVAVEITNVLSQVPNVALDS----SMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKL 100
G+A+++ +S P V D+ +LQNLPSI+ H L P +LDMCA+PGNK
Sbjct: 185 GLAIKMIETISSCPPVLGDNFLPPGAALLQNLPSIICTHVLAPCPNDTILDMCASPGNKT 244
Query: 101 THIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMK 160
THIA L+ + G L+A+DK+ +V +L + + + ++ DST++ ++R
Sbjct: 245 THIAALLKNQGRLVAIDKTPTKVAQLRQRCENFG-AKVEILQTDSTKL-------LDRFC 296
Query: 161 LQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDW 220
ESFD+ILLDAPCS G+RP F N S K ++SY +Q+KL +
Sbjct: 297 Y--ESFDKILLDAPCSALGKRPQFVNTTS----RKILRSYVPLQRKLFET---------- 340
Query: 221 QGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAE 280
+ LLK DG LVY TC++++ ENE ++AW L ++ ++ELV+ P LG G L +E
Sbjct: 341 -AVQLLKTDGTLVYSTCTITLAENEGIVAWAL-KNFKLELVEAAPILGGPGWDGTQLTSE 398
Query: 281 DQAVMQRFGPPLIPTDRNTDTIGFFICKLRKK 312
+QRFGP ++ D++GFFI K KK
Sbjct: 399 QLKKVQRFGP-----HQSIDSVGFFIAKFVKK 425
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 10/42 (23%)
Query: 341 VVHHPV----------QIIVDQPCALAVLRGADVFAPGVLAM 372
+VHHPV +I+VD C AVLRGA ++APGV+ M
Sbjct: 89 IVHHPVSHQTPQKHNKEIVVDAVCGAAVLRGAHIYAPGVIGM 130
>gi|148227140|ref|NP_001090297.1| NOP2/Sun domain family, member 6 [Xenopus laevis]
gi|114108045|gb|AAI23126.1| MGC154309 protein [Xenopus laevis]
Length = 467
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 102/264 (38%), Positives = 141/264 (53%), Gaps = 35/264 (13%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
LQNLPS + H L+ QPG+++LDMCAAPG K THIA LM D G +IALDK +V K++
Sbjct: 217 FLQNLPSAVVSHVLNPQPGERILDMCAAPGGKTTHIATLMEDQGEVIALDKIASKVEKIK 276
Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDIERMK---LQKESFDRILLDAPCSGFGQRPMF 184
+ L+L I+ ++ST+ E+ ESFDRILLDAPCSG GQRP
Sbjct: 277 QNASVLKLKCIKAFCFNSTKAVRDQNCPDEQGDGPPFFPESFDRILLDAPCSGMGQRPNM 336
Query: 185 YNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
S K++ SY +Q+KL A + LL+ G LVY TC++++ EN
Sbjct: 337 VCPFSL----KELTSYQPLQRKLFSA-----------AVELLRPGGTLVYSTCTVTLSEN 381
Query: 245 EAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLI----------- 293
E +AW L P ++L P +G +G+ +L + ++QRF P +
Sbjct: 382 EEQVAWALKTFPCLKLQPQEPHVGGEGMMGAELPPDQLKLLQRFDPSRVEFCSVDTNHCS 441
Query: 294 --PTDR----NTDTIGFFICKLRK 311
P+D N DTIGFFI + K
Sbjct: 442 AQPSDTIPLANKDTIGFFIARFLK 465
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 319 IYIHPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFAPGVLA 371
I HP + D ++I P++ +++ HPVQ+IV C AVLRGA V+A G+++
Sbjct: 86 ILQHPIVPDLLLI-PVIGPRRTLKQHPVQVIVGAQCGNAVLRGAHVYAAGIVS 137
>gi|440909187|gb|ELR59124.1| Putative methyltransferase NSUN6, partial [Bos grunniens mutus]
Length = 470
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 115/293 (39%), Positives = 156/293 (53%), Gaps = 41/293 (13%)
Query: 43 FRGVAVEITNVLSQVPNV--ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKL 100
+GV V +T + P+ L S + LQNLPS + H LD QPG+K+LD+CAAPG K
Sbjct: 191 LKGVGVRMTEPVYLSPSFDNVLPSYL-FLQNLPSAVVSHVLDPQPGEKILDLCAAPGGKT 249
Query: 101 THIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDST---RINTSSQIDIE 157
THIA LM+D G +IALDK +V K+++ L L+SI+ +D T +++ D E
Sbjct: 250 THIAALMHDQGEVIALDKISKKVEKIKQNALLLGLNSIRAFCFDGTKALKLDMVKDTDGE 309
Query: 158 RMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSL 217
L ESFDRILLDAPCSG GQRP + K++ SY +Q+KL
Sbjct: 310 PPFL-PESFDRILLDAPCSGMGQRPNMACTWTL----KEVMSYQPLQRKLFTVA------ 358
Query: 218 FDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV-QTLPQLGMKGLAHKD 276
+ LLK G+LVY TC++++ ENE +AW L P ++L Q PQ+G +G+
Sbjct: 359 -----VELLKPGGVLVYSTCTVTLAENEEQVAWALEAFPGLQLQHQQDPQVGGEGMLGAG 413
Query: 277 LEAEDQAVMQRFGPPLIPT-DR-----------------NTDTIGFFICKLRK 311
L E +QRF P + + DR N D IGFFI K K
Sbjct: 414 LSPEQLKRLQRFDPSAMWSLDRDIGSLRDASIEDLVWLANKDCIGFFIAKFVK 466
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 308 KLRKKY-GEAPEIYIHPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFA 366
+L+K++ G + + HP L D ++I P++ +++ ++IV C AVLRGA V+
Sbjct: 74 ELQKQFNGLSFPVLQHPDLQDVLLI-PVIGPRKNIKQQTCEVIVGAQCGSAVLRGAHVYV 132
Query: 367 PGVLA 371
PG+++
Sbjct: 133 PGIVS 137
>gi|156546966|ref|XP_001599497.1| PREDICTED: putative methyltransferase NSUN6-like [Nasonia
vitripennis]
Length = 459
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 104/281 (37%), Positives = 150/281 (53%), Gaps = 36/281 (12%)
Query: 45 GVAVEITNVLSQVPNVA---LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLT 101
G+AV +T+++S +P + L +LQNLPSIL LD QPG+ VLDMCAAPGNK T
Sbjct: 202 GIAVTMTDIISHIPQINDNILPKGYVLLQNLPSILCSRVLDPQPGETVLDMCAAPGNKTT 261
Query: 102 HIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRI--NTSSQIDIERM 159
HIA LM + G ++A++K K ++ +L I+ + ++ + +DST+ + + +
Sbjct: 262 HIAALMENKGVVVAIEKIKNKLERLNSNIENFSATIVKAYCFDSTKAVCDAEEKSIFDGP 321
Query: 160 KLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFD 219
KESFDR+LLD PCS GQRP N S +++SY +Q+KL +
Sbjct: 322 PYSKESFDRVLLDGPCSALGQRPQIRNPISV----SQLRSYVPLQRKLFTS--------- 368
Query: 220 WQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQL-GMK-------G 271
+ LL+ G LVY TC++++ ENE +IAW L P +EL +L MK G
Sbjct: 369 --AVQLLRPGGTLVYSTCTITIAENEGIIAWALKTFPNLELRSVREKLMSMKMEKFATVG 426
Query: 272 LAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKK 312
L E + RF D N DT+GFFI K+
Sbjct: 427 YTIDGLTTEQSDKLCRF-------DEN-DTVGFFIACFIKR 459
Score = 45.1 bits (105), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 309 LRKKYGEAPEIYIHPHLNDCIVIGPLLK-LSQSVVHHPVQIIVDQPCALAVLRGADVFAP 367
L+K P I P + + I++ K + ++ ++IVD C AVLRGA ++AP
Sbjct: 80 LKKYTRPIPIISTFPCVEELIIVNGWDKSVELNLERQQYEVIVDAACGAAVLRGAHIYAP 139
Query: 368 GVLAMPLG 375
GVL MP G
Sbjct: 140 GVLGMPRG 147
>gi|322801564|gb|EFZ22220.1| hypothetical protein SINV_04379 [Solenopsis invicta]
Length = 463
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 104/280 (37%), Positives = 154/280 (55%), Gaps = 38/280 (13%)
Query: 45 GVAVEITNVLSQVPNVAL-DSSM---GILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKL 100
GVA+ +T+V+S++P + D S+ +LQNLPSI+ L+ QP + VLDMCAAPGNK
Sbjct: 207 GVAIIMTDVISRIPQFNINDESLRPHALLQNLPSIICSLVLNPQPDETVLDMCAAPGNKT 266
Query: 101 THIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMK 160
THI+LLM GT+IAL+K+ +V + +E K +I+ YD+T+ + +
Sbjct: 267 THISLLMKGQGTIIALEKNPGKVRRFKE---KCNDRNIKIFCYDATKAVIAREHSFVHTD 323
Query: 161 ----LQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVS 216
++ FDRILLD PCS GQRP YN + +++SY +Q+ L R
Sbjct: 324 DGPPFEENYFDRILLDTPCSALGQRPQLYNTIT----SAQLRSYIPLQRSLFSVAVR--- 376
Query: 217 LFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQL-----GMKG 271
LLK G LVY TC++++ ENE +IAW L + P+++L ++ G++G
Sbjct: 377 --------LLKPGGTLVYSTCTVTIAENEGIIAWALKQFPKLKLESVKDEIKTDKYGIQG 428
Query: 272 LAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
L ED + RFGP +D +GFFI L+K
Sbjct: 429 YVIDGLTNEDAKKVCRFGP-------ESDFVGFFIACLKK 461
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 296 DRNTDTIGFFICKLRKKYGEA----PEIYIHPHLNDCIVIGPLLK--LSQSVVHHPVQII 349
DR TD + LRK + P I++ P L + IV +S + +P +II
Sbjct: 67 DRFTDYYTNDLDNLRKALKQDDKPDPSIHVLPDLPNGIVAVDSWDSLVSLDLRRYPDEII 126
Query: 350 VDQPCALAVLRGADVFAPGVLAMPLG 375
VD C AVLRG+ V+APG++ MP G
Sbjct: 127 VDAICGAAVLRGSHVYAPGIIGMPNG 152
>gi|307198376|gb|EFN79318.1| Putative methyltransferase NSUN6 [Harpegnathos saltator]
Length = 442
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 103/284 (36%), Positives = 153/284 (53%), Gaps = 42/284 (14%)
Query: 45 GVAVEITNVLSQVPNV--------ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAP 96
G+AV +T+V+S++P + +L +LQNLPSI+ L+ QPG+ +LDMCAAP
Sbjct: 182 GIAVIMTDVISRIPQLNATADPPESLRPLCALLQNLPSIVCSLVLNPQPGETILDMCAAP 241
Query: 97 GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI 156
GNK THI+ LM G +IAL+K+ +V +L E K +++ D+ + D
Sbjct: 242 GNKTTHISYLMRGQGMIIALEKNPGKVARLRE---KCNDGNVKIFCCDAANAVVGQEQDS 298
Query: 157 ERMK----LQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVY 212
R ++ FDRILLD PCS GQRP NA + + L +SY +Q++L A
Sbjct: 299 VRATDGPPFPEDHFDRILLDTPCSALGQRPQLSNAITSVQL----RSYVPLQRRLFFAAV 354
Query: 213 RFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQL----- 267
R LLK G LVY TC++++ ENE ++AW L R P++EL ++
Sbjct: 355 R-----------LLKPRGTLVYSTCTVTIAENEGIVAWALKRFPQLELESIEERIKTDRY 403
Query: 268 GMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
G +G L +D ++RFGP +D++GFFI L+K
Sbjct: 404 GTRGYTVNGLADKDAKKVRRFGP-------ESDSVGFFIACLKK 440
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 344 HPVQIIVDQPCALAVLRGADVFAPGVLAMPLG 375
+P +IIVD C AVLRG+ V+APG++ + G
Sbjct: 96 YPDEIIVDAKCGAAVLRGSHVYAPGIMGISSG 127
>gi|395827249|ref|XP_003786817.1| PREDICTED: putative methyltransferase NSUN6 isoform 1 [Otolemur
garnettii]
Length = 469
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 111/294 (37%), Positives = 155/294 (52%), Gaps = 44/294 (14%)
Query: 43 FRGVAVEITNVLSQVPNV--ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKL 100
RG+ + +T + P+ L S + LQNLPS L H L+ QPG+ +LD+CAAPG K
Sbjct: 191 LRGIGIRMTEPVYLSPSFDNVLPSYL-FLQNLPSALVSHVLNPQPGEMILDLCAAPGGKT 249
Query: 101 THIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERM 159
THIA LM D G +IALDK +V K+++ L L+SI+ +D T+ + ++D+ E
Sbjct: 250 THIAALMQDQGVVIALDKIFNKVEKIKQNALLLGLNSIRAFCFDGTK---AVKLDVFEDT 306
Query: 160 K----LQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFV 215
K E+FDRILLDAPCSG GQRP + K++ SY +Q++L
Sbjct: 307 KGGPPFLPETFDRILLDAPCSGMGQRPNMACTWTL----KEVTSYQPLQRRLFTV----- 357
Query: 216 SLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHK 275
+ LLK G+LVY TC++++ ENE +AW L P ++L PQ+G +G+
Sbjct: 358 ------AVQLLKPGGVLVYSTCTVTLAENEEQVAWALKTFPCLKLQPQEPQIGGEGMLGA 411
Query: 276 DLEAEDQAVMQRFGPPLIP---TD---------------RNTDTIGFFICKLRK 311
L E +QRF P +P TD N D IGFFI K K
Sbjct: 412 GLSFEQLKQLQRFDPSAVPLQDTDLDSLRDAAAEDMMRLANKDCIGFFIAKFVK 465
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 308 KLRKKY-GEAPEIYIHPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFA 366
+L+K++ G I HP L D ++I P++ +++ + + +V C AVLRGA V+
Sbjct: 74 ELKKQFNGLTVPILQHPDLRDILLI-PVIGPRKNIQNQQCEAVVGAQCGNAVLRGAHVYV 132
Query: 367 PGVLA 371
PG+++
Sbjct: 133 PGIVS 137
>gi|307169943|gb|EFN62452.1| Putative methyltransferase NSUN6 [Camponotus floridanus]
Length = 462
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 101/280 (36%), Positives = 154/280 (55%), Gaps = 37/280 (13%)
Query: 45 GVAVEITNVLSQVPNVALDSSM----GILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKL 100
G+A+ +++V+S+VP + D+ +LQNLPSI+ L+ QPG+ +LDMCAAPGNK
Sbjct: 205 GIAIIMSDVISRVPQLNTDNEFLRPYALLQNLPSIICSLVLNPQPGETILDMCAAPGNKT 264
Query: 101 THIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRI----NTSSQIDI 156
THI+ LM G +IAL+K+ + + +E K +I+ YD+T+ S +
Sbjct: 265 THISFLMKGQGKIIALEKNAGKAKRFKE---KCNDENIKIFCYDATKAVVERGDSFVGNT 321
Query: 157 ERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVS 216
+ +++ FDRILLDAPCS GQRP YN + L +SY +Q+ L A R
Sbjct: 322 DTPPFKQDHFDRILLDAPCSALGQRPQLYNTITLAQL----RSYIPLQRSLFSAAVR--- 374
Query: 217 LFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQL-----GMKG 271
LLK++GILVY TC++++ ENE +IAW L + P+++L ++ G +G
Sbjct: 375 --------LLKQNGILVYSTCTITIAENEGIIAWALKQFPQLKLESVTDRIKTNRYGRQG 426
Query: 272 LAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
L E+ + RF I D++GFFI +K
Sbjct: 427 YTIDGLVNENARKVCRFDTESI------DSVGFFIACFKK 460
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 306 ICKLRKKYGEA-PEIYIHPHLNDCIVIGPLLKLSQSV--VHHPVQIIVDQPCALAVLRGA 362
+CK K+ + P I+ P L + IV S S+ +P +IIVD C AVLRG+
Sbjct: 78 LCKALKQVDKPDPSIHFLPDLPNGIVAVDSWDSSVSLDLKRYPNEIIVDAICGAAVLRGS 137
Query: 363 DVFAPGVLAMPLG 375
V+APGV+ MP G
Sbjct: 138 HVYAPGVIGMPNG 150
>gi|332017885|gb|EGI58545.1| Putative methyltransferase NSUN6 [Acromyrmex echinatior]
Length = 461
Score = 167 bits (423), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 154/282 (54%), Gaps = 38/282 (13%)
Query: 44 RGVAVEITNVLSQVPNVALDSSM----GILQNLPSILAGHYLDVQPGQKVLDMCAAPGNK 99
RG+A+ +T+V+S+VP + +++ +LQNLPSI+ L+ QPG+ +LDMCAAPGNK
Sbjct: 202 RGIAIIMTDVISRVPQLNVNNESLRPHALLQNLPSIVCSLVLNPQPGETILDMCAAPGNK 261
Query: 100 LTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERM 159
THI+LLM GT+IAL+K+ +V + +E + + +I+ D+T+ + R
Sbjct: 262 TTHISLLMKGQGTIIALEKNLGKVKRFKEKCENEK--NIKIFCCDATKAIIEREHSFVRE 319
Query: 160 K-----LQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRF 214
++ FDRILLD PCS GQRP YN + ++ SY +Q+ L R
Sbjct: 320 HTDGPPFEENYFDRILLDTPCSALGQRPQLYNTIT----PAQLHSYVPLQRNLFSTAVR- 374
Query: 215 VSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQL-----GM 269
LLK G LVY TC++++ ENE +IAW L + P+++L ++ G
Sbjct: 375 ----------LLKLKGTLVYSTCTITIAENEGIIAWALKQFPKLQLQSVKDRIKTDKYGT 424
Query: 270 KGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
G L E+ + RFGP +D+IGFFI L+K
Sbjct: 425 PGYIIDGLTNENAKKVCRFGP-------ESDSIGFFIACLKK 459
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 295 TDRNTDTIGFFICKLRKKYGEAPEIYIHPHLNDCIVIGPLLKLSQSV--VHHPVQIIVDQ 352
TD T+ + L++ P I+ P L + IV S S+ +P +IIVD
Sbjct: 66 TDYYTNDLDNLYKALKQDGKPDPSIHFLPDLPNGIVAVDSWDFSISLDLKIYPDEIIVDA 125
Query: 353 PCALAVLRGADVFAPGVLAMPLG 375
C AVLRG+ V+APGV+ MP G
Sbjct: 126 ICGAAVLRGSHVYAPGVIGMPNG 148
>gi|348549914|ref|XP_003460778.1| PREDICTED: putative methyltransferase NSUN6-like [Cavia porcellus]
Length = 314
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 100/264 (37%), Positives = 135/264 (51%), Gaps = 35/264 (13%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
LQNLP+ + H L QPG++VLD+CAAPG K THIA LM+D G IALDK +V K++
Sbjct: 55 FLQNLPTAVVAHVLHPQPGERVLDLCAAPGGKATHIAALMHDQGEAIALDKIPNKVEKIK 114
Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDI--ERMKLQKESFDRILLDAPCSGFGQRPMFY 185
+ L L+SI+ +D T+ D E ESFDRILLDAPCSG GQRP
Sbjct: 115 QNALLLGLNSIKAFCFDGTKALKHDMTDKTDEGPPFSPESFDRILLDAPCSGMGQRPNMA 174
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ K++ SY +Q+K + LLK G+L+Y TC++++ ENE
Sbjct: 175 CTWTL----KEVMSYQPLQRKFFSVAAQ-----------LLKPGGMLIYSTCTITLAENE 219
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTD--------- 296
+AW L P ++L P++G +G+ L E +QRF P +P
Sbjct: 220 EQVAWALSTFPCLQLQPQEPRIGEEGMMGAGLSLEQLRQLQRFDPSAVPLQDPDQDALRD 279
Query: 297 ---------RNTDTIGFFICKLRK 311
N D IGFFI K K
Sbjct: 280 ATAEDMIRLANKDCIGFFIAKFLK 303
>gi|189241190|ref|XP_001810247.1| PREDICTED: similar to GA10764-PA [Tribolium castaneum]
Length = 516
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 97/246 (39%), Positives = 142/246 (57%), Gaps = 31/246 (12%)
Query: 67 GILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKL 126
+LQNLPSI+ H L P +LDMCA+PGNK THIA L+ + G L+A+DK+ +V +L
Sbjct: 302 ALLQNLPSIICTHVLAPCPNDTILDMCASPGNKTTHIAALLKNQGRLVAIDKTPTKVAQL 361
Query: 127 EETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYN 186
+ + + ++ DST++ +D + ESFD+ILLDAPCS G+RP F N
Sbjct: 362 RQRCENFG-AKVEILQTDSTKL-----LD----RFCYESFDKILLDAPCSALGKRPQFVN 411
Query: 187 ANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEA 246
S K ++SY +Q+KL + + LLK DG LVY TC++++ ENE
Sbjct: 412 TTS----RKILRSYVPLQRKLFET-----------AVQLLKTDGTLVYSTCTITLAENEG 456
Query: 247 VIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFI 306
++AW L ++ ++ELV+ P LG G L +E +QRFGP ++ D++GFFI
Sbjct: 457 IVAWAL-KNFKLELVEAAPILGGPGWDGTQLTSEQLKKVQRFGP-----HQSIDSVGFFI 510
Query: 307 CKLRKK 312
K KK
Sbjct: 511 AKFVKK 516
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 10/42 (23%)
Query: 341 VVHHPV----------QIIVDQPCALAVLRGADVFAPGVLAM 372
+VHHPV +I+VD C AVLRGA ++APGV+ M
Sbjct: 215 IVHHPVSHQTPQKHNKEIVVDAVCGAAVLRGAHIYAPGVIGM 256
>gi|56118618|ref|NP_001008125.1| NOP2/Sun domain family, member 6 [Xenopus (Silurana) tropicalis]
gi|51703758|gb|AAH81330.1| nsun6 protein [Xenopus (Silurana) tropicalis]
Length = 467
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 102/265 (38%), Positives = 138/265 (52%), Gaps = 37/265 (13%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
LQNLPS + H L+ QPG+++LDMCAAPG K THIA LM D G +IA+DK +V K++
Sbjct: 217 FLQNLPSAVVSHVLNPQPGERILDMCAAPGGKTTHIATLMKDQGEVIAMDKIANKVEKIK 276
Query: 128 ETIKKLQLSSIQTHVYDST---RINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMF 184
L+L I+ ++ST R S + +SFDRILLDAPCSG GQRP
Sbjct: 277 HNASVLKLKCIKAFCFNSTKAVRDQNSPSEQGDGPPFLPKSFDRILLDAPCSGMGQRPNM 336
Query: 185 YNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
S K++ SY +Q+KL A + LL+ G LVY TC++++ EN
Sbjct: 337 VCPFSL----KELTSYQPLQRKLFTA-----------AVELLRPGGTLVYSTCTVTLSEN 381
Query: 245 EAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGP-------------- 290
E +AW L P +EL P +G +G+ +L + ++QRF P
Sbjct: 382 EEQVAWALKTFPCLELQPQEPHVGGEGMLGAELSPDHLKLLQRFDPCRSEFCSVDLNHCS 441
Query: 291 ----PLIPTDRNTDTIGFFICKLRK 311
IP N DTIGFFI + K
Sbjct: 442 AEHSNTIPL-ANKDTIGFFIARFVK 465
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Query: 319 IYIHPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFAPGVLA 371
I HP L+D ++I P++ +++ HHPVQ+IV C AVLRGA V+A G+++
Sbjct: 86 ILQHPVLHDLLLI-PVIGPRKTLKHHPVQVIVGAQCGNAVLRGAHVYAAGIVS 137
>gi|311265698|ref|XP_003130779.1| PREDICTED: putative methyltransferase NSUN6 [Sus scrofa]
Length = 472
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 105/265 (39%), Positives = 144/265 (54%), Gaps = 39/265 (14%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
LQNLPS + H LD QPG+++LD+CAAPG K THIA M D G +IALDK +V K++
Sbjct: 217 FLQNLPSAVVTHVLDPQPGERILDLCAAPGGKTTHIAARMRDQGEVIALDKIANKVEKIK 276
Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDIERMK---LQKESFDRILLDAPCSGFGQRPMF 184
+ L L+SI+ +D T+ + ++DI+ ESFDRILLDAPCSG GQRP
Sbjct: 277 QNALLLGLNSIRAFCFDGTK---ALKLDIDTEGEPPFLPESFDRILLDAPCSGMGQRPNM 333
Query: 185 YNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
+ K++ SY +Q+KL + LLK G+LVY TC++++ EN
Sbjct: 334 ACTWTL----KEVTSYQPLQRKLFTV-----------AVELLKPGGVLVYSTCTVTLAEN 378
Query: 245 EAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIP---TD----- 296
E +AW L P ++L + PQ+G G+ L +E +QRF P ++P TD
Sbjct: 379 EEQVAWALGTFPCLQLQRQDPQIGGAGMMGAGLTSEQLKQLQRFDPSVVPSWDTDIDSLR 438
Query: 297 ----------RNTDTIGFFICKLRK 311
N D IGFFI K K
Sbjct: 439 DTRTEDMIRLANQDCIGFFIAKFVK 463
Score = 38.5 bits (88), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 308 KLRKKY-GEAPEIYIHPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFA 366
+L+K++ G + + HP L D ++I P++ +++ ++IV C +VLRGA V+
Sbjct: 74 ELQKQFNGLSFPVLQHPDLQDVLLI-PVIGPRKNIKQQHCEVIVGAQCGNSVLRGAHVYV 132
Query: 367 PGVLA 371
PG+++
Sbjct: 133 PGIVS 137
>gi|221122446|ref|XP_002154232.1| PREDICTED: putative methyltransferase NSUN6-like [Hydra
magnipapillata]
Length = 452
Score = 164 bits (415), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 160/290 (55%), Gaps = 36/290 (12%)
Query: 45 GVAVEITNVLSQVPNVA-LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHI 103
GVAV++ ++ P+ + L+ + QNLPSIL GH + Q G +LDMCA+PG K +H+
Sbjct: 178 GVAVKMLSMKIPQPSFSKLNLELFFPQNLPSILVGHICNPQDGDLILDMCASPGGKTSHV 237
Query: 104 ALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK 163
A+LM + GT+IA+DKS+ +++K+ E + L++++ YDS+++ D ++ +
Sbjct: 238 AVLMKNQGTIIAIDKSEKKISKITENCVIMGLTNVKCFAYDSSKLCCHEACDNSKLSFDE 297
Query: 164 ES------------FDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAV 211
++ FD+ILLD PCSG GQRP + + DK+++SY QKKL Q
Sbjct: 298 QNKNDLKPPFPPCFFDKILLDPPCSGIGQRPQLRSVLT----DKELQSYPIYQKKLFQ-- 351
Query: 212 YRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKG 271
Q + LLK G L+Y TC+L +ENE I+W L E++L++ +G G
Sbjct: 352 ---------QAVSLLKPGGRLIYSTCTLLPQENEEQISWALKTFKELKLLKQDIIIGRPG 402
Query: 272 LAHKDLEAEDQAVMQRFGPPLIPTDRNT-------DTIGFFI-CKLRKKY 313
L + L E+ +QRF + + N DTIGFFI C + KY
Sbjct: 403 LNNYGLSPEECDKVQRFDQCYLNSLENDLYRSLEFDTIGFFIACLTKIKY 452
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/25 (72%), Positives = 20/25 (80%)
Query: 347 QIIVDQPCALAVLRGADVFAPGVLA 371
++IVD C AVLRGA VFAPGVLA
Sbjct: 97 EVIVDVHCGAAVLRGAHVFAPGVLA 121
>gi|330842051|ref|XP_003292999.1| hypothetical protein DICPUDRAFT_41394 [Dictyostelium purpureum]
gi|325076705|gb|EGC30470.1| hypothetical protein DICPUDRAFT_41394 [Dictyostelium purpureum]
Length = 491
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 102/280 (36%), Positives = 165/280 (58%), Gaps = 33/280 (11%)
Query: 45 GVAVEITNVLSQVP--NVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTH 102
GV +E+T L P N L+ +M LQ+LPS++ + L+ + G ++LDMCAAPG K T
Sbjct: 231 GVGIEMTERLFFCPPLNGVLEQNM-FLQHLPSLMTVYQLEPKLGDRILDMCAAPGGKTTL 289
Query: 103 IALLM---------NDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSS 152
IA L+ N++ +IALDK+K +V K+ + KKL L S ++ + DS+++
Sbjct: 290 IASLIQQQFDQQPSNNSTEIIALDKNKGKVKKVLDLCKKLSLDSFVKCYSRDSSKLLKEH 349
Query: 153 QID-IERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAV 211
Q D +++ ++ SFD+ILLD PCSG G +P F + ++L ++ ++ QKKLL
Sbjct: 350 QQDPSDKVIFKEGSFDKILLDGPCSGLGSKPRFIETSKLIDL----QNCSDFQKKLLDV- 404
Query: 212 YRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKG 271
+ LLK+ G LVY TC+++ EENE +A++L+++P ++LV+ P + G
Sbjct: 405 ----------AVGLLKEGGTLVYSTCTINPEENELNVAYVLNKYPNMKLVEQTPHISQIG 454
Query: 272 LAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
L + L+ + + ++QR+ P+D N TIGFFI K K
Sbjct: 455 LENCGLDDQQRKLVQRYD----PSDANIGTIGFFISKFIK 490
>gi|297686139|ref|XP_002820622.1| PREDICTED: putative methyltransferase NSUN6 [Pongo abelii]
Length = 469
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 99/267 (37%), Positives = 146/267 (54%), Gaps = 41/267 (15%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
LQNLPS L H L+ QPG+K+LD+CAAPG K THIA LM+D G +IALDK +V K++
Sbjct: 217 FLQNLPSALVTHVLNPQPGEKILDLCAAPGGKTTHIAALMHDQGEVIALDKIFNKVEKIK 276
Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQID-IERMKLQKE----SFDRILLDAPCSGFGQRP 182
+ L L+SI+ +D T+ + ++D +E + + S+ R +++ C+G GQRP
Sbjct: 277 QNALLLGLNSIRAFCFDGTK---AVKLDMVEDTEGEPPFIVVSYIRHMIEGECAGMGQRP 333
Query: 183 MFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVE 242
S K++ SY +Q+KL A + LLK +G+LVY TC++++
Sbjct: 334 NMACTWSL----KEVASYQPLQRKLFTAA-----------VQLLKPEGVLVYSTCTITLA 378
Query: 243 ENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIP---TD--- 296
ENE +AW L + P ++L + PQ+G +G+ L E +QRF P +P TD
Sbjct: 379 ENEEQVAWALTKFPCLQLQRQEPQIGGEGMRGAGLSCEQLKQLQRFDPSAVPLPDTDMDS 438
Query: 297 ------------RNTDTIGFFICKLRK 311
N D+IGFFI K K
Sbjct: 439 LREARREDMLRLANKDSIGFFIAKFVK 465
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 308 KLRKKY-GEAPEIYIHPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFA 366
+L+K++ G + I HP L D ++I P++ +++ + IV C AVLRGA V+A
Sbjct: 74 ELQKQFNGLSVPILQHPDLQDVLLI-PVIGPRKNIKKQQCEAIVGAQCGNAVLRGAHVYA 132
Query: 367 PGVLA 371
PG+++
Sbjct: 133 PGIVS 137
>gi|66803617|ref|XP_635647.1| NOL1/NOP2/Sun family protein [Dictyostelium discoideum AX4]
gi|60463974|gb|EAL62137.1| NOL1/NOP2/Sun family protein [Dictyostelium discoideum AX4]
Length = 501
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 103/289 (35%), Positives = 157/289 (54%), Gaps = 42/289 (14%)
Query: 45 GVAVEITNVLSQVP--NVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTH 102
GVA+E+T L P N L+ M LQ+LPSI + L+ + G K++DMCAAPG K T
Sbjct: 230 GVAIEMTERLYVCPPLNSVLEDKM-FLQHLPSIYTVYQLEPKLGDKIIDMCAAPGGKTTL 288
Query: 103 IALLMNDT------------------GTLIALDKSKPRVTKLEETIKKLQLSSIQTHVY- 143
IA L+ + ALDK+K +V K+ + K+L L T +
Sbjct: 289 IASLIQQFEINNNQNNQKYQNNNEIKTEIFALDKNKGKVKKIIDLCKRLSLDKYVTCLAK 348
Query: 144 DSTRINTSSQID-IERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYAN 202
DS+++ +Q D +++++ Q SFD++LLD PCSG G RP ++S ++L + +
Sbjct: 349 DSSKLTKENQQDPLDKIRFQSNSFDKVLLDGPCSGLGSRPRLIESSSLVDL----TNSSE 404
Query: 203 IQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQ 262
QKKL+ Q + LLK GILVY TCS++ EENE ++++L+ +PE++L+
Sbjct: 405 FQKKLID-----------QAVSLLKPGGILVYSTCSINPEENELNVSYLLNNYPEMKLIP 453
Query: 263 TLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
+P + GL + L + ++ RF P+D N TIGFFI K K
Sbjct: 454 QIPHISQPGLPNCGLTEQQCKLVSRFD----PSDSNIGTIGFFIAKFTK 498
>gi|452820974|gb|EME28010.1| alkane 1-monooxygenase isoform 1 [Galdieria sulphuraria]
Length = 995
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 100/273 (36%), Positives = 152/273 (55%), Gaps = 28/273 (10%)
Query: 44 RGVAVEITNVLSQVPNV--ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLT 101
G+A++I + P++ + +GILQNLP + GH +D +PGQ++LD+CA+PG K +
Sbjct: 518 EGLAIQIVEPVYFAPSLFDIVSQGIGILQNLPCTVVGHVMDPKPGQRILDLCASPGGKTS 577
Query: 102 HIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINT-----SSQIDI 156
H+A LM++ GTL+ALD+++ +V +E KK + + ++V D+T+ SS+ D
Sbjct: 578 HLATLMHNQGTLVALDRNRKKVEAIESLCKKWGIDIVYSYVVDATKFRNYIQEFSSEQDH 637
Query: 157 ERMK--LQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRF 214
+K +ESFD +L+D PCS FG RP F S K K ++ QK L A
Sbjct: 638 FSVKPPFIRESFDSVLVDPPCSAFGLRPKFQYTLSM----KDWKGFSRFQKIFLLA---- 689
Query: 215 VSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLA- 273
GI LLK G LVY TC+L ENE IA+ L P VEL++ +G KG +
Sbjct: 690 -------GILLLKPGGCLVYSTCTLDPLENEENIAYCLEHFP-VELIEQPIYVGGKGCSG 741
Query: 274 HKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFI 306
+L +D +QRF L+ + +T +GF +
Sbjct: 742 FGNLSQKDCEKLQRFD--LLDEENDTXRLGFIL 772
>gi|452820975|gb|EME28011.1| alkane 1-monooxygenase isoform 2 [Galdieria sulphuraria]
Length = 957
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 100/272 (36%), Positives = 152/272 (55%), Gaps = 28/272 (10%)
Query: 45 GVAVEITNVLSQVPNV--ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTH 102
G+A++I + P++ + +GILQNLP + GH +D +PGQ++LD+CA+PG K +H
Sbjct: 481 GLAIQIVEPVYFAPSLFDIVSQGIGILQNLPCTVVGHVMDPKPGQRILDLCASPGGKTSH 540
Query: 103 IALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINT-----SSQIDIE 157
+A LM++ GTL+ALD+++ +V +E KK + + ++V D+T+ SS+ D
Sbjct: 541 LATLMHNQGTLVALDRNRKKVEAIESLCKKWGIDIVYSYVVDATKFRNYIQEFSSEQDHF 600
Query: 158 RMK--LQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFV 215
+K +ESFD +L+D PCS FG RP F S K K ++ QK L A
Sbjct: 601 SVKPPFIRESFDSVLVDPPCSAFGLRPKFQYTLSM----KDWKGFSRFQKIFLLA----- 651
Query: 216 SLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLA-H 274
GI LLK G LVY TC+L ENE IA+ L P VEL++ +G KG +
Sbjct: 652 ------GILLLKPGGCLVYSTCTLDPLENEENIAYCLEHFP-VELIEQPIYVGGKGCSGF 704
Query: 275 KDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFI 306
+L +D +QRF L+ + +T +GF +
Sbjct: 705 GNLSQKDCEKLQRFD--LLDEENDTXRLGFIL 734
>gi|340370362|ref|XP_003383715.1| PREDICTED: putative methyltransferase NSUN6-like [Amphimedon
queenslandica]
Length = 456
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 108/282 (38%), Positives = 150/282 (53%), Gaps = 29/282 (10%)
Query: 45 GVAVEITNVLSQVP--NVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTH 102
G+A+ +T+ L P N L + + Q+LPS++ H L +VLDMCAAPG K TH
Sbjct: 189 GLAIRMTDPLYISPSLNEMLLNDVAFPQSLPSLVVSHVLKPTETDRVLDMCAAPGGKATH 248
Query: 103 IALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMK-- 160
+A LM + G +IALD+S ++ L+ +K+ L+++ +DST +S D +
Sbjct: 249 LATLMRNKGVIIALDRSAGKMKSLKHNVKRFGLTNVHCFHHDSTAACSSKSDDASSQRNF 308
Query: 161 -----LQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFV 215
FD++LLDAPCSG GQRP F N +NL S QKKLL
Sbjct: 309 PGPPPYPPAFFDKVLLDAPCSGLGQRPRF---NFSINL-TDFTSLPLYQKKLLA------ 358
Query: 216 SLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHK 275
Q + LLK G L+Y TCSLS EENEA + W+L E+ L++ P +G GL+
Sbjct: 359 -----QAVLLLKPGGKLLYSTCSLSPEENEAQVKWLLSTFKEMILIEQSPVIGYPGLSMF 413
Query: 276 DLEAEDQAVMQRFGPP-----LIPTDRNTDTIGFFICKLRKK 312
+L E+ +QRFGP L + + DTIGFFI KK
Sbjct: 414 ELSREECLKLQRFGPAAFNKQLSSSPLSLDTIGFFIALFEKK 455
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 319 IYIHPHLNDCIVI---GPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFAPGVLAMP 373
+ +HP L D ++I GP L + +I+V+ C +VLRGADV+ PG+L P
Sbjct: 81 MSVHPLLPDVLLIEGSGPHSDLRL----YDKEILVEMTCGQSVLRGADVYGPGILGAP 134
>gi|198419141|ref|XP_002127214.1| PREDICTED: similar to NOL1/NOP2/Sun domain family, member 6 [Ciona
intestinalis]
Length = 445
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 109/301 (36%), Positives = 149/301 (49%), Gaps = 46/301 (15%)
Query: 45 GVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIA 104
G+ +E LS N L S + QNLPSI+ GH L+ Q G VLDMCAAPG K +HI
Sbjct: 153 GIRMECPIFLSLCLNDVLPSKI-FAQNLPSIIVGHVLNPQEGDIVLDMCAAPGGKTSHIV 211
Query: 105 LLMNDTGTLIALDKSKPRVTKLEETIKKL-QLSSIQT-HVYDSTRINTSSQID-IERMKL 161
L+ G L+A+D+S +V K+++ KL Q++ + T DS ++ + D E K
Sbjct: 212 SLLRGRGRLVAVDRSSSKVEKIKQNAAKLGQMADVLTVFTADSRKLCSDDSGDKSEENKF 271
Query: 162 QKESFDRILLDAPCSGFGQRPMFYNAN-SFLNLDKKIKSYANIQKKLLQAVYRFVSLFDW 220
FD+ILLDAPCS GQRP + N S +N K IKSY +Q++L R
Sbjct: 272 SSSYFDKILLDAPCSALGQRPKCWLENQSNVNKMKNIKSYPALQRQLFNTAVR------- 324
Query: 221 QGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAH-KDLEA 279
LLK G LVY TC+ +V+ENE ++ W L +HP ++L Q P +G G +L
Sbjct: 325 ----LLKPGGTLVYSTCTTTVDENEGLVEWALDKHPCLKLSQHTPHIGGTGRQEVTNLSP 380
Query: 280 EDQAVMQRFGPP-------------LIP----------------TDRNTDTIGFFICKLR 310
+ +Q F P IP + N D+IGFFI K
Sbjct: 381 SNLHSLQYFTPGSPVTCVQEHHNVHTIPKLSNNVPSLTNLLDLEAECNQDSIGFFIAKFI 440
Query: 311 K 311
K
Sbjct: 441 K 441
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 50/97 (51%), Gaps = 14/97 (14%)
Query: 290 PPLIPTDR--NTDTIGFFICKLRKK---------YGEAPEIYIHPHLNDCIVIGPLLKLS 338
PPL T R T+ + I +L K Y EAP I+ H L IVI L
Sbjct: 6 PPLFTTLRVNETEQVDSVIKELEAKLKILYSANGYSEAPVIFQHSQLKSTIVIPTLY--- 62
Query: 339 QSVVHHPVQIIVDQPCALAVLRGADVFAPGVLAMPLG 375
Q ++H +IVD C +AVLRGADVF PG+L MP G
Sbjct: 63 QDIMHSYPPVIVDHGCGMAVLRGADVFVPGILCMPTG 99
>gi|403278299|ref|XP_003930754.1| PREDICTED: putative methyltransferase NSUN6 [Saimiri boliviensis
boliviensis]
Length = 444
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 143/290 (49%), Gaps = 61/290 (21%)
Query: 43 FRGVAVEITNVLSQVPNVALDSSMG---ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNK 99
+G+ + +T + P + DS + LQNLPS + H L+ QPG+K+LD+CAAPG K
Sbjct: 191 LKGMGIRMTEPVYLSP--SFDSVLPRYLFLQNLPSAVVTHVLNPQPGEKILDLCAAPGGK 248
Query: 100 LTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERM 159
THIA LM+D +++LSS Q H S ++ E
Sbjct: 249 TTHIAALMHD----------------------QVRLSSQQNHFQSSIHFSSEGGTMWEPP 286
Query: 160 KLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFD 219
L E+FDRILLDAPCSG GQRP S K++ SY +Q+KL A
Sbjct: 287 FL-PETFDRILLDAPCSGMGQRPNMACTWSL----KEVTSYQPLQRKLFTAA-------- 333
Query: 220 WQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEA 279
+ LLK G+LVY TC++++ ENE +AW L + P ++L PQ+G +G+ L
Sbjct: 334 ---VQLLKPGGVLVYSTCTITLAENEEQVAWALTKFPCLQLQPQEPQIGGEGMRGAGLSC 390
Query: 280 EDQAVMQRFGPPLIP---TD---------------RNTDTIGFFICKLRK 311
E +QRF P +P TD N D+IGFFI K K
Sbjct: 391 EQLKQLQRFDPSAVPLPNTDVDSLRETRREDMLQLANKDSIGFFIAKFVK 440
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 319 IYIHPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFAPGVLA 371
I HP L D ++I P++ +++ + IV C AVLRGA V+APG+++
Sbjct: 86 ILQHPDLQDVLLI-PVVGPRKNIKKQQCEAIVGAQCGNAVLRGAHVYAPGIVS 137
>gi|426240849|ref|XP_004014306.1| PREDICTED: putative methyltransferase NSUN6 [Ovis aries]
Length = 408
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/224 (41%), Positives = 128/224 (57%), Gaps = 24/224 (10%)
Query: 43 FRGVAVEITNVLSQVPNVALDSSMG---ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNK 99
+GV V +T + P + D+ + LQNLPS + H LD QPG+KVLD+CAAPG K
Sbjct: 191 LKGVGVRMTEPVYLSP--SFDNVLPNYLFLQNLPSAVVSHVLDPQPGEKVLDLCAAPGGK 248
Query: 100 LTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDST---RINTSSQIDI 156
THIA LM D G +IALDK +V K+++ L L+SI+ +D T +++ D
Sbjct: 249 TTHIAALMCDQGEVIALDKISKKVEKIKQNALLLGLNSIRAFCFDGTKALKLDMVKDTDG 308
Query: 157 ERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVS 216
E L ESFDRILLDAPCSG GQRP + K++ SY +Q+KL A
Sbjct: 309 EPPFL-PESFDRILLDAPCSGMGQRPNMACTWTL----KEVMSYQPLQRKLFTA------ 357
Query: 217 LFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVEL 260
+ LLK G+LVY TC++++ ENE +AW L P ++L
Sbjct: 358 -----AVELLKPGGVLVYSTCTVTLAENEEQVAWALETFPGLQL 396
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 308 KLRKKY-GEAPEIYIHPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFA 366
+L+K++ G + I HP L D ++I P++ +++ P ++IV C AVLRGA V+
Sbjct: 74 ELQKQFNGLSFPILQHPDLQDVLLI-PVIGPRKNIKQQPCEVIVGAQCGNAVLRGAHVYV 132
Query: 367 PGVLA 371
PG+++
Sbjct: 133 PGIVS 137
>gi|139948562|ref|NP_001077139.1| putative methyltransferase NSUN6 [Bos taurus]
gi|134024543|gb|AAI34425.1| NSUN6 protein [Bos taurus]
Length = 408
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/223 (41%), Positives = 128/223 (57%), Gaps = 22/223 (9%)
Query: 43 FRGVAVEITNVLSQVPNV--ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKL 100
+GV V +T + P+ L S + LQNLPS + H LD QPG+K+LD+CAAPG K
Sbjct: 191 LKGVGVRMTEPVYLSPSFDNVLPSYL-FLQNLPSAVVSHVLDPQPGEKILDLCAAPGGKT 249
Query: 101 THIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDST---RINTSSQIDIE 157
THIA LM+D G +IALDK +V K+++ L L+SI+ +D T +++ D E
Sbjct: 250 THIAALMHDQGEVIALDKISKKVEKIKQNALLLGLNSIRAFCFDGTKALKLDMVKDTDGE 309
Query: 158 RMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSL 217
L ESFDRILLDAPCSG GQRP + K++ SY +Q+KL
Sbjct: 310 PPFL-PESFDRILLDAPCSGMGQRPNMACTWTL----KEVMSYQPLQRKLFTV------- 357
Query: 218 FDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVEL 260
+ LLK G+LVY TC++++ ENE +AW L P ++L
Sbjct: 358 ----AVELLKPGGVLVYSTCTVTLAENEEQVAWALEAFPGLQL 396
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 308 KLRKKY-GEAPEIYIHPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFA 366
+L+K++ G + + HP L D ++I P++ +++ ++IV C AVLRGA V+
Sbjct: 74 ELQKQFNGLSFPVLQHPDLQDVLLI-PVIGPRKNIKQQTCEVIVGAQCGSAVLRGAHVYV 132
Query: 367 PGVLA 371
PG+++
Sbjct: 133 PGIVS 137
>gi|296481451|tpg|DAA23566.1| TPA: NOL1/NOP2/Sun domain family, member 6 [Bos taurus]
Length = 408
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 93/223 (41%), Positives = 128/223 (57%), Gaps = 22/223 (9%)
Query: 43 FRGVAVEITNVLSQVPNV--ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKL 100
+GV V +T + P+ L S + LQNLPS + H LD QPG+K+LD+CAAPG K
Sbjct: 191 LKGVGVRMTEPVYLSPSFDNVLPSYL-FLQNLPSAVVSHVLDPQPGEKILDLCAAPGGKT 249
Query: 101 THIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDST---RINTSSQIDIE 157
THIA LM+D G +IALDK +V K+++ L L+SI+ +D T +++ D E
Sbjct: 250 THIAALMHDQGEVIALDKISKKVEKIKQNALLLGLNSIRAFCFDGTKALKLDMVKDTDGE 309
Query: 158 RMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSL 217
L ESFDRILLDAPCSG GQRP + K++ SY +Q+KL
Sbjct: 310 PPFL-PESFDRILLDAPCSGMGQRPNMACTWTL----KEVMSYQPLQRKLFTV------- 357
Query: 218 FDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVEL 260
+ LLK G+LVY TC++++ ENE +AW L P ++L
Sbjct: 358 ----AVELLKPGGMLVYSTCTVTLAENEEQVAWALEAFPGLQL 396
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 308 KLRKKY-GEAPEIYIHPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFA 366
+L+K++ G + + HP L D ++I P++ +++ ++IV C AVLRGA V+
Sbjct: 74 ELQKQFNGLSFPVLQHPDLQDVLLI-PVIGPRKNIKQQTCEVIVGAQCGSAVLRGAHVYV 132
Query: 367 PGVLA 371
PG+++
Sbjct: 133 PGIVS 137
>gi|167520882|ref|XP_001744780.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777111|gb|EDQ90729.1| predicted protein [Monosiga brevicollis MX1]
Length = 305
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 87/220 (39%), Positives = 126/220 (57%), Gaps = 15/220 (6%)
Query: 44 RGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHI 103
RG+A+ +T + Q ++ ILQNLPS +A L +PG +VLDMCAAPG K +HI
Sbjct: 71 RGLAITMTAAVFQTMDLPPLEPNAILQNLPSCVAARALAPEPGMRVLDMCAAPGGKTSHI 130
Query: 104 ALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK 163
+LL+ TGT++AL++S R +L+E + L +++ H D+T+ S+ + L
Sbjct: 131 SLLLRGTGTVVALERSPKRAAQLKEWVASLGCHNVEVHQMDATKCLEGSKGKNSKFPLA- 189
Query: 164 ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGI 223
SFD +LLDAPCSG GQRP + L + +++ YA+ Q+KLLQ +
Sbjct: 190 -SFDAVLLDAPCSGLGQRPRV-RVDCPLRV-AELEDYASYQRKLLQVA-----------V 235
Query: 224 PLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
L+ G LV+ TCSL ENEA +AW L PE+ LV
Sbjct: 236 AALRPGGRLVFSTCSLFAGENEANVAWALKAMPELTLVDA 275
>gi|290985269|ref|XP_002675348.1| predicted protein [Naegleria gruberi]
gi|284088944|gb|EFC42604.1| predicted protein [Naegleria gruberi]
Length = 424
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 94/259 (36%), Positives = 143/259 (55%), Gaps = 38/259 (14%)
Query: 70 QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEET 129
QN+ S++ H LD + G+K+LDMCA PG K THI+ LM + G LI D+ K +V L++
Sbjct: 184 QNICSMVVAHLLDPKKGEKILDMCACPGGKTTHISNLMENEGELICCDRQKGKVDLLKKL 243
Query: 130 IKKLQLSSIQTHVYDST----RINTSS---------QIDIERMKLQKESFDRILLDAPCS 176
+KL S ++ V D T R+NT S + + E++ L++ FDR+L+DAPCS
Sbjct: 244 SEKLGYSVMKPTVLDGTKATRRVNTDSSENQKSKKRKTNEEQVFLEENYFDRVLVDAPCS 303
Query: 177 GFGQRPMFYNANSF--LNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVY 234
G GQRP SF +LD +K A Q+K+L ++ +LK GILV+
Sbjct: 304 GLGQRPTL----SFKEFSLD-SLKKTAEYQRKILAEAFK-----------VLKPGGILVF 347
Query: 235 CTCSLSVEENEAVIAWILHR-HPEVELVQ-TLPQLGMKGLAHKDLEAEDQAVMQRFGPPL 292
TC++S ENE + W+L H ++EL+ + +GL+ ++ ++ + RF P
Sbjct: 348 STCTISPMENEENVLWMLENFHSKIELLTPNMTAFASEGLSSIISDSSIRSKVLRFDPVT 407
Query: 293 IPTDRNTDTIGFFICKLRK 311
P +TIGFF CK +K
Sbjct: 408 TP-----ETIGFFACKFKK 421
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 23/30 (76%)
Query: 343 HHPVQIIVDQPCALAVLRGADVFAPGVLAM 372
H+ I+VD+ C AVLRGADVFAPG+L +
Sbjct: 59 HYKKDIVVDRKCGEAVLRGADVFAPGILGI 88
>gi|336236100|ref|YP_004588716.1| sun protein [Geobacillus thermoglucosidasius C56-YS93]
gi|335362955|gb|AEH48635.1| sun protein [Geobacillus thermoglucosidasius C56-YS93]
Length = 447
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 95/247 (38%), Positives = 133/247 (53%), Gaps = 38/247 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L + ++VLD CAAPG K THIA LMN+TG +I D + +V +EE
Sbjct: 235 IQDESSMLVARALGPKEHERVLDSCAAPGGKSTHIAELMNNTGQVICADIHEHKVNLIEE 294
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
K+LQL++I DS R+ ++E+FD+IL+DAPCSGFG ++P
Sbjct: 295 NAKRLQLTNISARTLDSRRLGEV---------FERETFDKILVDAPCSGFGVIRRKPDIK 345
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
A + + I S A +Q+++L AV PLLKK G LVY TC++ EENE
Sbjct: 346 YAKT----EADISSLAALQREILDAV-----------APLLKKGGTLVYSTCTIDHEENE 390
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
AVIA L+ HPE +T+ Q L + Q ++ L+P +D GFF
Sbjct: 391 AVIAQFLNDHPEFSPDETMKQ---------RLPEKVQPYVRNGQLHLLPHYFGSD--GFF 439
Query: 306 ICKLRKK 312
I LRKK
Sbjct: 440 IASLRKK 446
>gi|312111726|ref|YP_003990042.1| sun protein [Geobacillus sp. Y4.1MC1]
gi|423720641|ref|ZP_17694823.1| ribosomal RNA small subunit methyltransferase B [Geobacillus
thermoglucosidans TNO-09.020]
gi|311216827|gb|ADP75431.1| sun protein [Geobacillus sp. Y4.1MC1]
gi|383365994|gb|EID43285.1| ribosomal RNA small subunit methyltransferase B [Geobacillus
thermoglucosidans TNO-09.020]
Length = 447
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 95/247 (38%), Positives = 133/247 (53%), Gaps = 38/247 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L + ++VLD CAAPG K THIA LMN+TG +I D + +V +EE
Sbjct: 235 IQDESSMLVARALGPKEHERVLDSCAAPGGKSTHIAELMNNTGQVICADIHEHKVNLIEE 294
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
K+LQL++I DS R+ ++E+FD+IL+DAPCSGFG ++P
Sbjct: 295 NAKRLQLTNISARTLDSRRLGEV---------FERETFDKILVDAPCSGFGVIRRKPDIK 345
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
A + + I S A +Q+++L AV PLLKK G LVY TC++ EENE
Sbjct: 346 YAKT----EADISSLAALQREILDAV-----------APLLKKGGTLVYSTCTIDHEENE 390
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
AVIA L+ HPE +T+ Q L + Q ++ L+P +D GFF
Sbjct: 391 AVIAQFLNDHPEFSPDETMKQ---------RLPEKVQPYVRNGQLHLLPHYFGSD--GFF 439
Query: 306 ICKLRKK 312
I LRKK
Sbjct: 440 IASLRKK 446
>gi|301097830|ref|XP_002898009.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262106454|gb|EEY64506.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 497
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/272 (34%), Positives = 130/272 (47%), Gaps = 48/272 (17%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+QNLP + H LD Q G +LDMCAAPG K +H+A LM +TGTL+A D+SK + +L
Sbjct: 230 VQNLPCSVVAHVLDPQQGDVILDMCAAPGGKTSHVATLMRNTGTLVACDRSKRKALELRT 289
Query: 129 TIKKLQLSSIQTHVYDST--------------------------RINTSSQIDIERMKLQ 162
+ L L ++ DST R S+ ++++
Sbjct: 290 LCEDLHLECVEPLKMDSTHALLPKDKVDAAPRDGDFTSVAQVLARAKQSTPRQTRLLQVE 349
Query: 163 K---ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFD 219
E+FDRILLD PCS G RP +A NL Y N+Q+ L
Sbjct: 350 GFYLETFDRILLDPPCSALGLRPRLLHAGDADNL----AEYTNMQRNFL----------- 394
Query: 220 WQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEA 279
W LLK G LVY TC+++ +ENE ++ L +P + Q LG GL+ + L
Sbjct: 395 WVAAFLLKPGGTLVYSTCTINPKENEQMVHHALQNYPLKLVSQGDAHLGDHGLSGQGLNE 454
Query: 280 EDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
E+ A++QRF P + DT+GFF K K
Sbjct: 455 EEVALVQRFD----PANTELDTMGFFCAKFVK 482
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 318 EIYIHPHLNDCIVIGPLLKLSQSVVHHPV--QIIVDQPCALAVLRGADVFAPGVLAMPLG 375
E H L D ++I SV ++P I+VD+ C AVLRG+D+FA GV++ G
Sbjct: 94 EALAHASLPDVLMIPSSPSGQASVQYNPEFKSIVVDRLCGEAVLRGSDIFARGVMSASAG 153
Query: 376 KNS 378
N+
Sbjct: 154 INA 156
>gi|325186979|emb|CCA21523.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 463
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 100/291 (34%), Positives = 152/291 (52%), Gaps = 45/291 (15%)
Query: 44 RGVAV-EITNVLSQVPNV-ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLT 101
RG+AV +I V P + L+S + LQ PS + GH + Q +LDMCAAPG K T
Sbjct: 182 RGLAVSDIVRVCHNAPPLNGLESKVFYLQQFPSAMVGHVIHPQNDDYILDMCAAPGGKTT 241
Query: 102 HIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVY-DSTR------INTSSQI 154
H+A LM G +IA+D+S+ +V L+ ++ L L ++ DST+ + + +
Sbjct: 242 HMANLMT-KGLIIAVDRSRRKVGALKRLLQDLGLGKRVIAIHKDSTQLLRLKSLQMAPRP 300
Query: 155 DIER-MKLQK--------ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQK 205
IE+ M+++ ESFD+ILLD PCS G RP + L++ +K IQ+
Sbjct: 301 SIEKLMEMENSHFRGFYPESFDKILLDPPCSALGLRPRLLHPRDTEALEQFVK----IQR 356
Query: 206 KLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLP 265
L+ W + LLK DG+LV+ TC+L ENE ++A++L +P ++L+
Sbjct: 357 NLI-----------WCAVRLLKADGVLVFSTCTLHPRENEKMVAYVLETYPFMKLIAPFE 405
Query: 266 -----QLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
+ G KGL + L E ++QRF P + DTIGFF K +K
Sbjct: 406 NDPNLRFGSKGLDGQGLSNEQVGLVQRFDPTI------DDTIGFFCAKFQK 450
>gi|357012410|ref|ZP_09077409.1| 16S rRNA methyltransferase B [Paenibacillus elgii B69]
Length = 494
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 96/262 (36%), Positives = 143/262 (54%), Gaps = 45/262 (17%)
Query: 59 NVAL--DSSMGI--LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLI 114
N+AL D + G+ +Q+ S+L ++D QPG++VLD CAAPG K TH+A M D G ++
Sbjct: 269 NMALSPDYAAGLYSVQDESSMLVAEWVDPQPGERVLDCCAAPGGKTTHLAEKMGDRGEIV 328
Query: 115 ALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAP 174
A D + + +EE ++L L SI+T D+ R+ ESFDRILLDAP
Sbjct: 329 ACDVHEHKRKLIEEQAERLALRSIRTLTADARRLAE---------HFAPESFDRILLDAP 379
Query: 175 CSGFG---QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGI 231
CSG G ++P + S + ++ +IQ++LL+AV+ PLLK GI
Sbjct: 380 CSGLGVIRRKPDMKWSKS----EAELAEICDIQRELLEAVH-----------PLLKPGGI 424
Query: 232 LVYCTCSLSVEENEAVIAWILHRHPEVEL-VQTLPQLGMKGLAHKDLEAEDQAVMQRFGP 290
LVY TC++ ENE +I L RHP E + +P++ +KG ++L A
Sbjct: 425 LVYSTCTVEKAENEDMIRAFLERHPSFEADLPEVPEM-IKGRLDEELAAVR--------- 474
Query: 291 PLIPTDRNTDTIGFFICKLRKK 312
++P D +D GFFI +LRK+
Sbjct: 475 -IMPYDYGSD--GFFIARLRKR 493
>gi|355782677|gb|EHH64598.1| Putative methyltransferase NSUN6 [Macaca fascicularis]
Length = 416
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 119/262 (45%), Gaps = 81/262 (30%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
LQNLPS L H L+ QPG+K+LD+CAAPG K THIA LM+D
Sbjct: 214 FLQNLPSALVTHVLNPQPGEKILDLCAAPGGKTTHIAALMHD------------------ 255
Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNA 187
+ ESFDRILLDAPCSG GQRP
Sbjct: 256 -----------------------------QEPPFLPESFDRILLDAPCSGMGQRPNMACT 286
Query: 188 NSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
S K++ SY +Q+KL AV LLK +G+LVY TC++++ ENE
Sbjct: 287 WSL----KELASYQPLQRKLFTAVQ------------LLKPEGVLVYSTCTITLAENEEQ 330
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIP---TD-------- 296
+AW L + P ++L P +G +G+ L E +QRF P +P TD
Sbjct: 331 VAWALTKFPCLQLQPQEPHIGGEGMRGAGLSCEQLKQLQRFDPSAVPLPDTDMDSLREAR 390
Query: 297 -------RNTDTIGFFICKLRK 311
N D+IGFFI K K
Sbjct: 391 REDMLRLANKDSIGFFIAKFIK 412
Score = 38.1 bits (87), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 9/68 (13%)
Query: 308 KLRKKY-GEAPEIYIHPHLNDCI---VIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGAD 363
+L+K++ G + I HP L D + VIGP +++ + IV C AVLRGA
Sbjct: 74 ELQKQFNGLSVPILQHPDLQDVLLIPVIGP-----KNIKKQQCEAIVGAQCGNAVLRGAH 128
Query: 364 VFAPGVLA 371
V+APG+++
Sbjct: 129 VYAPGIVS 136
>gi|327274719|ref|XP_003222124.1| PREDICTED: putative methyltransferase NSUN6-like [Anolis
carolinensis]
Length = 430
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 94/266 (35%), Positives = 128/266 (48%), Gaps = 57/266 (21%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
LQNLPS + + L+ QPG+++LDMCAAPG K TH+A LM+D G +IALDK +V K++
Sbjct: 199 FLQNLPSAVVSYVLNPQPGERILDMCAAPGGKTTHLATLMHDEGEVIALDKIADKVKKIK 258
Query: 128 ETIKKLQLSSIQTHVYDSTR-INTSSQID-IERMKLQKESFDRILLDAPCSGFGQRPMFY 185
+ L+L+ I+T YD T+ + S + D E ESFDRILLDAPCSG GQRP
Sbjct: 259 QNASSLKLNCIKTFCYDGTKALEISKRADGQEGPPFVPESFDRILLDAPCSGMGQRPNMA 318
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAV--YRFVSLFDWQGIPLLKKDGILVYCTCSLSVEE 243
+ S K++ SY +Q++L V +R F
Sbjct: 319 FSWSL----KEVTSYQPLQRRLFSVVRIHRLEETF------------------------- 349
Query: 244 NEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPP---LIPTDRNT- 299
W + +P + L P +G +G+ L E +QRF P L P D N+
Sbjct: 350 ------WAIESNPLLPLCPKEPHIGGEGMIGAGLSPEQLKQLQRFDPSEAVLQPMDLNSL 403
Query: 300 --------------DTIGFFICKLRK 311
D IGFFI K K
Sbjct: 404 QSVKHEDLIRLANKDCIGFFIAKFIK 429
>gi|239826566|ref|YP_002949190.1| sun protein [Geobacillus sp. WCH70]
gi|239806859|gb|ACS23924.1| sun protein [Geobacillus sp. WCH70]
Length = 447
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 95/247 (38%), Positives = 130/247 (52%), Gaps = 38/247 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L + ++VLD CAAPG K THIA LMN+TG +I D + +V +EE
Sbjct: 235 IQDESSMLVARALGPKEHERVLDSCAAPGGKSTHIAELMNNTGQVICADIHEHKVNLIEE 294
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
K+LQL++I V DS R+ ++E FD+IL+DAPCSGFG ++P
Sbjct: 295 NAKRLQLTNISARVLDSRRLGEV---------FEREMFDKILVDAPCSGFGVIRRKPDIK 345
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
A + + I S +Q+++L AV PLLKK G LVY TC++ +ENE
Sbjct: 346 YAKT----EADIPSLVALQREILHAV-----------APLLKKGGTLVYSTCTIDRDENE 390
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
AVIA L HPE P MK + L + Q + L+P +D GFF
Sbjct: 391 AVIAQFLDDHPEFS-----PDETMK----RRLPEKVQPYVHNGQLHLLPHYFGSD--GFF 439
Query: 306 ICKLRKK 312
I LRKK
Sbjct: 440 IASLRKK 446
>gi|401410959|ref|XP_003884927.1| putative NOL1/NOP2/sun family protein [Neospora caninum Liverpool]
gi|325119346|emb|CBZ54899.1| putative NOL1/NOP2/sun family protein [Neospora caninum Liverpool]
Length = 631
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 102/278 (36%), Positives = 138/278 (49%), Gaps = 40/278 (14%)
Query: 45 GVAVEITNV--LSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTH 102
GVA+E+ LS++P + QNLPSI+ GH L QPG++VLDMCAAPG K H
Sbjct: 379 GVAIEMDRAVDLSRLPPCL------VAQNLPSIVVGHVLAPQPGERVLDMCAAPGGKTLH 432
Query: 103 IALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINT--SSQIDIERMK 160
+A LM G ++A+++SK R KL + +SI V + T S+ + E
Sbjct: 433 LATLMKGQGHIVAVERSKTRAQKLRSFLCSSPHASIVEVVCGDSAKGTWRSTHVGAEASP 492
Query: 161 LQK-ESFDRILLDAPCSGFGQRPMFYNANSFLNL-DKKIKSYANIQKKLLQAVYRFVSLF 218
++ +FDR+L D PC+ G RP F L D+ + S A Q++ LQ+
Sbjct: 493 GRRLGNFDRVLADVPCTALGLRPRL----DFDGLTDRVVLSAAEYQREFLQS-------- 540
Query: 219 DWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKD-- 276
G LLK G LVY TCS+S ENE + W L P V L P +G D
Sbjct: 541 ---GCQLLKTGGTLVYSTCSISRAENEENVVWALGHLPLV-LEPAEPFVGPHTFQSGDAL 596
Query: 277 ---LEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
L + A +QRF P + +TIGFFI K RK
Sbjct: 597 APLLPPGEAAKLQRFCP-------SGNTIGFFIAKFRK 627
>gi|223998784|ref|XP_002289065.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220976173|gb|EED94501.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 362
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 87/266 (32%), Positives = 134/266 (50%), Gaps = 40/266 (15%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
+LQNLPS++ H LD Q G+ VLDMC+APG K +H+A L+ + G ++A +K + ++
Sbjct: 113 MLQNLPSVVVAHVLDPQQGETVLDMCSAPGGKTSHVASLIRNNGLVVACEKGRKKMVTAR 172
Query: 128 ETIKKLQLSSIQTHVYDSTRI--------------------NTSSQIDIERMK-LQKESF 166
+ + + + I DST++ + SS+ + +K SF
Sbjct: 173 DFFQSMGATCIVPLSLDSTKLLIDDGDVFDWKSPKEIVKSASASSKDGLLSIKGFHPNSF 232
Query: 167 DRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLL 226
DRILLD PCS G RP L +KS + K + LF +PLL
Sbjct: 233 DRILLDPPCSALGLRP---------KLLVDVKSLPELLKH-----SDYQQLFVRSAVPLL 278
Query: 227 KKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQL-GMKGLAHKDLEAEDQAVM 285
K G+L Y TC+++ ENE ++ +IL P ++LV + G GL L E++ ++
Sbjct: 279 KVGGVLSYSTCTINASENEGIVKFILSEFPCMKLVPIADYIPGRAGLEGLGLSDEERGMV 338
Query: 286 QRFGPPLIPTDRNTDTIGFFICKLRK 311
+RF P+D TDT+GFF+ K K
Sbjct: 339 RRFD----PSDTATDTMGFFVAKFIK 360
>gi|397568241|gb|EJK46037.1| hypothetical protein THAOC_35319 [Thalassiosira oceanica]
Length = 484
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 89/270 (32%), Positives = 142/270 (52%), Gaps = 43/270 (15%)
Query: 64 SSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRV 123
S+ +LQNLPS+ H L+ +PG ++DMC APG K +HIA L+ + G +IA DKS+ ++
Sbjct: 234 STQHMLQNLPSVAVAHALEPRPGDVIMDMCCAPGGKTSHIASLVGNRGLIIACDKSRKKM 293
Query: 124 TKLEETIKKLQLSSIQTHVYDSTRI----------NTSSQID---------IERMKLQKE 164
+ + + I DST+ + S +D ++ +
Sbjct: 294 LNTAALFQSMGATCIIPLALDSTKCVIDEDETKWRDVRSVVDCAAIGEDGLLDVKGFHVD 353
Query: 165 SFDRILLDAPCSGFGQRPMFY-NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGI 223
SFDRILLD PCS G RP Y A S + +K YA QK+ ++A +
Sbjct: 354 SFDRILLDPPCSALGLRPKLYVEARSA----RHLKKYAEYQKRFVEA-----------AV 398
Query: 224 PLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQL--GMKGLAHKDLEAED 281
LLK+ G LVY TC+++ +ENE ++++IL ++ ++LV LP G +GL ++ L E
Sbjct: 399 KLLKRGGTLVYSTCTINADENEDMVSFILSQYDCMQLV-PLPDNFPGGRGLPNRGLSDEQ 457
Query: 282 QAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
++ ++RF P + +T+GFFI +K
Sbjct: 458 RSNIRRFDPTA-----DINTMGFFIALFQK 482
>gi|409096619|ref|ZP_11216643.1| tRNA/rRNA cytosine-C5-methylase NOL1/NOP2/Sun family protein
[Thermococcus zilligii AN1]
Length = 383
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 93/277 (33%), Positives = 149/277 (53%), Gaps = 56/277 (20%)
Query: 44 RGVAVEITNVLSQVPNVA----LDSSMGILQNLPSILAGHYLDVQPGQK--VLDMCAAPG 97
RG+AVE+T ++P+++ + Q+LPS++ L +PG++ V+DM AAPG
Sbjct: 153 RGLAVEVTLPKFKLPSLSELESFREGLFYAQSLPSMVTARVL--EPGEEDLVIDMAAAPG 210
Query: 98 NKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIE 157
K HIA LM + G +IA+DKS+ R+ K+EE + +L + +++ DS ++ ++ I+
Sbjct: 211 GKTGHIAQLMGNRGEIIAIDKSRNRLKKMEEELNRLGVKNVKLLHMDSRKL---PELGIK 267
Query: 158 RMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSL 217
D+ILLDAPC+ G RP + + + K ++A R+
Sbjct: 268 A--------DKILLDAPCTALGIRPKLWESRT---------------PKDIEATARYQRA 304
Query: 218 FDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVE---LVQTLPQLGMKGLAH 274
F W I LK+DG+LVY TC++S EENEA + ++L + ++E L P +G++G+
Sbjct: 305 FIWAAIKSLKRDGVLVYSTCTISYEENEANVKFMLEKGLKLEEQPLFIASPGIGIEGV-- 362
Query: 275 KDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
QRF P +R+ T GFFI KLRK
Sbjct: 363 -----------QRFYP-----NRHM-TQGFFIAKLRK 382
>gi|341582537|ref|YP_004763029.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus sp. 4557]
gi|340810195|gb|AEK73352.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus sp. 4557]
Length = 383
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 91/272 (33%), Positives = 146/272 (53%), Gaps = 46/272 (16%)
Query: 44 RGVAVEITNVLSQVPNVA----LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNK 99
RG+AVE+T ++P+++ + Q+LPS++ H L+ + ++DM AAPG K
Sbjct: 153 RGLAVEVTLPKFKLPSLSELESFKEGLFYAQSLPSMVVAHVLEPSEEELIVDMAAAPGGK 212
Query: 100 LTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERM 159
+HIA LM + G +IA+DKSK R+ K+EE +K+L + +++ DS ++ ++ IE
Sbjct: 213 TSHIAQLMQNRGEIIAMDKSKNRLKKMEEELKRLGVKNVKPIHMDSRKL---PELGIE-- 267
Query: 160 KLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFD 219
DRILLDAPC+ G RP + + + K I++ A Q+ + A
Sbjct: 268 ------ADRILLDAPCTALGIRPKLWESRT----PKDIEATARYQRHFINAA-------- 309
Query: 220 WQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEA 279
I L++ G+LVY TC+LS EENEA + +IL + ++E +G G+ ++
Sbjct: 310 ---IKSLRRGGVLVYSTCTLSYEENEANVKYILGKGLKLEEQSIF--IGSSGMGIDEV-- 362
Query: 280 EDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
QRF P +R+ T GFFI + RK
Sbjct: 363 ------QRFYP-----NRHL-TQGFFIARFRK 382
>gi|240102348|ref|YP_002958656.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus gammatolerans EJ3]
gi|239909901|gb|ACS32792.1| tRNA/rRNA cytosine-C5-methylase, putative [Thermococcus
gammatolerans EJ3]
Length = 389
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 88/275 (32%), Positives = 147/275 (53%), Gaps = 46/275 (16%)
Query: 41 ILFRGVAVEITNVLSQVPNVA----LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAP 96
+ RG+AVE+T ++P+++ + Q+LPS++ H L+ + ++DM AAP
Sbjct: 156 VSMRGLAVEVTLPKFRLPSLSELQSFKEGLFYAQSLPSMVVAHVLEPSEEELIIDMAAAP 215
Query: 97 GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI 156
G K +HIA L+ + G +IA+DKS+ R+ K+EE +K+L + +++ D+ ++
Sbjct: 216 GGKTSHIAQLLQNRGEIIAIDKSRNRLRKMEEELKRLGVKNVRLIRMDARKLPE------ 269
Query: 157 ERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVS 216
+ LQ D+ILLDAPC+ G RP + + + K + A R+
Sbjct: 270 --LGLQA---DKILLDAPCTALGIRPKLWESRT---------------PKDIIATARYQR 309
Query: 217 LFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKD 276
F W I L++ G+LVY TC+LS EENEA + ++L + ++E +G +G+ ++
Sbjct: 310 AFIWAAIKSLRRGGVLVYSTCTLSYEENEANVKFMLEKGLKLEEQAVF--IGSEGIGLEN 367
Query: 277 LEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
+ QRF P +R+ T GFFI KLRK
Sbjct: 368 V--------QRFYP-----NRHL-TQGFFIAKLRK 388
>gi|403378883|ref|ZP_10920940.1| 16S rRNA methyltransferase B [Paenibacillus sp. JC66]
Length = 457
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 88/246 (35%), Positives = 131/246 (53%), Gaps = 37/246 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L G +D +PG VLD CAAPG K TH+A LMND G +I D + + + +
Sbjct: 245 IQDESSMLVGEAVDPRPGMSVLDCCAAPGGKTTHMAELMNDQGMVIGCDIHEHKEALIRK 304
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
++L L+SIQT D+ ++ + ESFDR+LLDAPCSG G ++P
Sbjct: 305 QAQRLGLTSIQTLAADARTLSG---------RFPAESFDRVLLDAPCSGLGVIRRKPDLK 355
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
A ++K+ + IQ +LL+AV+ PL+K G+LVY TC+++ EENE
Sbjct: 356 WAKE----PNEVKALSRIQAELLEAVH-----------PLVKPGGLLVYSTCTIAAEENE 400
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
I L +HP+ L P + A+ ++Q L+P N+D GFF
Sbjct: 401 EQIRRFLLKHPQFTL-SAFPSAFSP--VEQRTAAKSSGMLQ-----LLPHHYNSD--GFF 450
Query: 306 ICKLRK 311
IC+L+K
Sbjct: 451 ICRLQK 456
>gi|14521973|ref|NP_127450.1| proliferating-cell nucleolar antigen P120, [Pyrococcus abyssi GE5]
gi|5459193|emb|CAB50679.1| Sun/NOL1/NOP nucleolar protein [Pyrococcus abyssi GE5]
gi|380742614|tpe|CCE71248.1| TPA: proliferating-cell nucleolar antigen P120, putative
[Pyrococcus abyssi GE5]
Length = 385
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/272 (32%), Positives = 139/272 (51%), Gaps = 46/272 (16%)
Query: 44 RGVAVEITNVLSQVPNVA----LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNK 99
RG+AVE+T ++P+++ + Q+LPS++A L+ + + ++DM AAPG K
Sbjct: 153 RGLAVEVTLPKFKLPSLSELKSFEKGYFYPQSLPSMVATRVLEPKEDELIIDMAAAPGGK 212
Query: 100 LTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERM 159
THIA L+ + G +IA+DKSK R+ K+EE +++L + +++ Q+D +
Sbjct: 213 TTHIAQLLQNRGEIIAIDKSKNRLKKMEENLRRLGVKNVKL-----------IQMDARNL 261
Query: 160 KLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFD 219
D+ILLDAPC+ G RP + + K ++A R+ F
Sbjct: 262 PDLGLKADKILLDAPCTALGVRPKLWEERT---------------PKHIEATARYQRAFI 306
Query: 220 WQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEA 279
W I L+K G+LVY TC+LS EENE + ++L + ++E Q +G G+ +
Sbjct: 307 WAAIKSLRKGGVLVYSTCTLSYEENEGNVKFMLKKGMKLEDQQIF--IGSPGIGLDKV-- 362
Query: 280 EDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
QRF P +T GFFI KLRK
Sbjct: 363 ------QRFYP------HKHNTQGFFIAKLRK 382
>gi|221480789|gb|EEE19218.1| PUA domain-containing, nucleolar protein, putative [Toxoplasma
gondii GT1]
Length = 613
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 97/278 (34%), Positives = 135/278 (48%), Gaps = 40/278 (14%)
Query: 45 GVAVEITNV--LSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTH 102
G+AVE+ + LS +P + QNLPSI+ GH L QPG++VLDMCAAPG K H
Sbjct: 361 GIAVEMESAIDLSTLPACL------VAQNLPSIVVGHVLSPQPGERVLDMCAAPGGKTLH 414
Query: 103 IALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ 162
+A LM G ++A+++SK R KL + +SI V + T +
Sbjct: 415 LATLMKGHGLIVAVERSKTRAEKLRSFLSTSSHASIVEIVCGDSAKGTWQSTQLGMGSHG 474
Query: 163 KE---SFDRILLDAPCSGFGQRPMFYNANSFLNL-DKKIKSYANIQKKLLQAVYRFVSLF 218
++ FDR+L D PC+ G RP F L D+ + + A Q++ L++
Sbjct: 475 RDFIGYFDRVLADVPCTALGLRPRI----DFEGLTDRVVLAAAKYQREFLKS-------- 522
Query: 219 DWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLE 278
G LLK G LVY TCS+S ENE +AW L RH + L P +G + D
Sbjct: 523 ---GCQLLKTGGTLVYSTCSVSRAENEENVAWAL-RHLPLMLEPAEPFVGTHTFENGDRG 578
Query: 279 AE-----DQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
A + +QRF P + +TIGFFI K K
Sbjct: 579 ARLFPPGEAEKLQRFCP-------SGNTIGFFIAKFLK 609
>gi|23098962|ref|NP_692428.1| hypothetical protein OB1507 [Oceanobacillus iheyensis HTE831]
gi|22777190|dbj|BAC13463.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 448
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 94/284 (33%), Positives = 143/284 (50%), Gaps = 45/284 (15%)
Query: 34 IYCYALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMC 93
I C A +G+ +E N+ N+ D + I Q+ S+L G L V+P VLD C
Sbjct: 202 IECRASIFSSQGIIIEKGNIFR--TNLLKDGKITI-QDQSSMLVGEMLAVEPEMNVLDSC 258
Query: 94 AAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQ 153
+APG K+TH+A M D GT+ A D ++ ++E LQLSSI D+ ++
Sbjct: 259 SAPGGKVTHVAEKMLDKGTIHAFDLHAKKIKLIDEKATTLQLSSILAQKGDARKLAD--- 315
Query: 154 IDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYANIQKKLLQA 210
K +KESFDRI++DAPCSG G +P S ++ I+ A IQ+ +L
Sbjct: 316 ------KYEKESFDRIVVDAPCSGLGVINGKPEIKYEKS----EEDIQRLAKIQQDILNE 365
Query: 211 VYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMK 270
V IPLLK++G+L+Y TC++ EEN V+ +L H ++ +
Sbjct: 366 V-----------IPLLKENGLLIYSTCTVDTEENNQVVRQVLKNHQDISI---------- 404
Query: 271 GLAHKD---LEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
L+ +D +E ++ G L P D +TD GFF+ +L+K
Sbjct: 405 DLSFRDELPVEIQEAPGWSEEGLQLFPQDFHTD--GFFLTRLKK 446
>gi|237845131|ref|XP_002371863.1| NOL1/NOP2/sun family protein [Toxoplasma gondii ME49]
gi|211969527|gb|EEB04723.1| NOL1/NOP2/sun family protein [Toxoplasma gondii ME49]
gi|221501454|gb|EEE27230.1| PUA domain-containing, nucleolar protein, putative [Toxoplasma
gondii VEG]
Length = 613
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 97/278 (34%), Positives = 135/278 (48%), Gaps = 40/278 (14%)
Query: 45 GVAVEITNV--LSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTH 102
G+AVE+ + LS +P + QNLPSI+ GH L QPG++VLDMCAAPG K H
Sbjct: 361 GIAVEMESAIDLSTLPACL------VAQNLPSIVVGHVLSPQPGERVLDMCAAPGGKTLH 414
Query: 103 IALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ 162
+A LM G ++A+++SK R KL + +SI V + T +
Sbjct: 415 LATLMKGHGLIVAVERSKTRAEKLRSFLSTSSHASIVEIVCGDSAKGTWQSTQLGMGSHG 474
Query: 163 KE---SFDRILLDAPCSGFGQRPMFYNANSFLNL-DKKIKSYANIQKKLLQAVYRFVSLF 218
++ FDR+L D PC+ G RP F L D+ + + A Q++ L++
Sbjct: 475 RDFIGYFDRVLADVPCTALGLRPRI----DFEGLTDRVVLAAAKYQREFLKS-------- 522
Query: 219 DWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLE 278
G LLK G LVY TCS+S ENE +AW L RH + L P +G + D
Sbjct: 523 ---GCQLLKTGGTLVYSTCSVSRAENEENVAWAL-RHLPLMLEPAEPFVGTHTFENGDRG 578
Query: 279 AE-----DQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
A + +QRF P + +TIGFFI K K
Sbjct: 579 ARLFPPGEAEKLQRFCP-------SGNTIGFFIAKFLK 609
>gi|57642057|ref|YP_184535.1| tRNA/rRNA cytosine-C5-methylase NOL1/NOP2/Sun family protein
[Thermococcus kodakarensis KOD1]
gi|57160381|dbj|BAD86311.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family, containing
RNA-binding PUA domain [Thermococcus kodakarensis KOD1]
Length = 383
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 90/272 (33%), Positives = 144/272 (52%), Gaps = 46/272 (16%)
Query: 44 RGVAVEITNVLSQVPNVA----LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNK 99
RG+AVE+T ++P+++ + Q+LPS++A L+ ++DM AAPG K
Sbjct: 153 RGLAVEVTLPKFKLPSLSELESFKEGLFYAQSLPSMVASRVLEPSEEDLIIDMAAAPGGK 212
Query: 100 LTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERM 159
+HIA LM + G +IA+DKS+ R+ K+EE +K+L + +++ D+ ++ ++ IE
Sbjct: 213 TSHIAQLMQNRGEIIAIDKSRNRLRKMEEELKRLGVKNVRLIHMDARKL---PELGIE-- 267
Query: 160 KLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFD 219
D+ILLDAPC+ G RP + + K ++A R+ F
Sbjct: 268 ------ADKILLDAPCTALGIRPKLWETRT---------------PKDIEATARYQRAFI 306
Query: 220 WQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEA 279
W I L+K G LVY TC++S EENEA + ++L + ++E + G+ D+E
Sbjct: 307 WAAIKSLRKGGTLVYSTCTISYEENEANVKYMLQKGLKLEEQSVF--IASHGI---DMEG 361
Query: 280 EDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
+QRF P +R+ T GFFI KLRK
Sbjct: 362 -----VQRFYP-----NRHL-TQGFFIAKLRK 382
>gi|86605784|ref|YP_474547.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
JA-3-3Ab]
gi|86554326|gb|ABC99284.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
JA-3-3Ab]
Length = 448
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/234 (36%), Positives = 119/234 (50%), Gaps = 41/234 (17%)
Query: 79 HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSI 138
HYLD QPG++V+D CAAPG K TH+A M D G + ALD+ R+ +LEE +++L LSSI
Sbjct: 255 HYLDPQPGERVIDCCAAPGGKTTHMAEQMQDRGEIWALDRHPHRLRRLEENVQRLGLSSI 314
Query: 139 QTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIK 198
+ D ++ +++ Q S DR+LLDAPCSG G +A + +I+
Sbjct: 315 RPLAIDLLSLDAAAEPPAPLPPWQ--SADRVLLDAPCSGLGTLHRHADAR-WRQTPAQIQ 371
Query: 199 SYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEV 258
A++Q +LLQ R+ LK G+LVY TC+L ENEAVI L+RHP
Sbjct: 372 ELAHLQAQLLQVAARW-----------LKPGGLLVYATCTLHPAENEAVIQSFLNRHPH- 419
Query: 259 ELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKK 312
AE G PL+ D GFFI +LR++
Sbjct: 420 ------------------WAAE--------GDPLLIWPHRQDRDGFFIQRLRRR 447
>gi|323489537|ref|ZP_08094764.1| ribosomal RNA small subunit methyltransferase B [Planococcus
donghaensis MPA1U2]
gi|323396668|gb|EGA89487.1| ribosomal RNA small subunit methyltransferase B [Planococcus
donghaensis MPA1U2]
Length = 450
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 93/244 (38%), Positives = 128/244 (52%), Gaps = 38/244 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L + L V+PG VLDMCAAPG K THIA MN++GTL ALD + +V ++E
Sbjct: 237 IQDESSMLPAYALQVEPGMTVLDMCAAPGGKTTHIAEKMNNSGTLYALDLHQHKVKLIDE 296
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
++L + I+T V D + +ER +E FDRIL+DAPCSG G
Sbjct: 297 NAERLGHTVIETTVGDGKQ-------SVER--FGEEKFDRILVDAPCSGLG----VIKRK 343
Query: 189 SFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVI 248
+ KK + +A +Q+ +Q + L D Q LLK+DGILVY TC++ EN
Sbjct: 344 PDIKYTKKEQDFARLQE--IQ-----IELLD-QAARLLKEDGILVYSTCTVDAVENRGTA 395
Query: 249 AWILHRHPEVELVQ-TLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
L HPE+E +Q LP L G+ H +Q F P D +D GFFI
Sbjct: 396 ERFLKEHPEMEKIQVALPDL--MGIKHT-------GFVQVF-----PQDYGSD--GFFIA 439
Query: 308 KLRK 311
+K
Sbjct: 440 AFKK 443
>gi|14591725|ref|NP_143813.1| hypothetical protein PH1991 [Pyrococcus horikoshii OT3]
gi|3258435|dbj|BAA31118.1| 389aa long hypothetical nucleolar protein [Pyrococcus horikoshii
OT3]
Length = 389
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 88/275 (32%), Positives = 135/275 (49%), Gaps = 52/275 (18%)
Query: 44 RGVAVEITNVLSQVPNV----ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNK 99
RG+AVE+T ++P++ A + Q LPS++ L+ + ++DM AAPG K
Sbjct: 156 RGLAVEVTLPKFKLPSLSELKAFEKGYFYPQGLPSMVTARVLEPKEDDVIIDMAAAPGGK 215
Query: 100 LTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERM 159
THIA L+ + G +IA+DKSK R+ K+EE IK+L + +++ Q+D ++
Sbjct: 216 TTHIAQLLENKGEIIAIDKSKNRLRKMEENIKRLGVKNVKL-----------VQMDARKL 264
Query: 160 KLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFD 219
D+ILLDAPC+ G RP + + K ++A R+ F
Sbjct: 265 PDLGIKADKILLDAPCTALGVRPKLWEERTL---------------KHIEATARYQRAFI 309
Query: 220 WQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL---PQLGMKGLAHKD 276
W I L++ G+LVY TC+LS EENE + +++ + ++E P +GM +
Sbjct: 310 WAAIKSLRRGGVLVYSTCTLSYEENEGNVKFMIRKGMKLEEQSIFIGSPGIGMNKV---- 365
Query: 277 LEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
QRF P T GFFI KLRK
Sbjct: 366 ---------QRFYP------HKHLTQGFFIAKLRK 385
>gi|56419708|ref|YP_147026.1| RNA-binding Sun protein [Geobacillus kaustophilus HTA426]
gi|375008141|ref|YP_004981774.1| hypothetical protein [Geobacillus thermoleovorans CCB_US3_UF5]
gi|56379550|dbj|BAD75458.1| RNA-binding Sun protein [Geobacillus kaustophilus HTA426]
gi|359286990|gb|AEV18674.1| hypothetical protein GTCCBUS3UF5_13610 [Geobacillus thermoleovorans
CCB_US3_UF5]
Length = 444
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/256 (33%), Positives = 124/256 (48%), Gaps = 56/256 (21%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L LD PG++VLD CAAPG K THIA M+ G ++A+D + +V +E+
Sbjct: 232 IQDESSMLVARALDPAPGERVLDCCAAPGGKTTHIAERMDGRGEVVAVDIHERKVMMIEQ 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
K+L L ++ T DS R+ + ESFDR+L+DAPC+GFG ++P
Sbjct: 292 QAKRLGLDNVATLALDSRRLGE---------RFAPESFDRVLVDAPCTGFGVIRRKPEI- 341
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ I + IQ+ +L+A PLLKK G LVY TC++ EENE
Sbjct: 342 ---KYTKGKDAIAALVEIQQAILRA-----------AAPLLKKGGTLVYSTCTVEREENE 387
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNT------ 299
IA L HP+ L D ++ +R P+ P +
Sbjct: 388 EAIARFLADHPDFFL--------------------DASLAERMPEPVRPHVKGGMLQLLP 427
Query: 300 ---DTIGFFICKLRKK 312
D+ GFFI +LRKK
Sbjct: 428 HHFDSDGFFIARLRKK 443
>gi|223477542|ref|YP_002581976.1| tRNA/RNA cytosine-C5-methylase [Thermococcus sp. AM4]
gi|214032768|gb|EEB73597.1| tRNA/RNA cytosine-C5-methylase [Thermococcus sp. AM4]
Length = 389
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 87/272 (31%), Positives = 144/272 (52%), Gaps = 46/272 (16%)
Query: 44 RGVAVEITNVLSQVPNVA----LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNK 99
RG+AVE+T ++P+++ + Q+LPS++ H L+ + ++DM AAPG K
Sbjct: 159 RGLAVEVTTPKFKLPSLSELESFKEGLFYAQSLPSMVVAHVLEPSEEELIIDMAAAPGGK 218
Query: 100 LTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERM 159
+HIA L+ + G +IA+DKS+ R+ K+EE +K+L + +++ D+ ++ +
Sbjct: 219 TSHIAQLLQNRGEIIAIDKSRNRLRKMEEELKRLGVKNVKLIRMDARKLPE--------L 270
Query: 160 KLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFD 219
LQ D+ILLDAPC+ G RP + + + + + A R+ F
Sbjct: 271 GLQA---DKILLDAPCTALGIRPKLWESRT---------------PRDIIATARYQRAFI 312
Query: 220 WQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEA 279
W I L+ G+LVY TC+LS EENEA + ++L + ++E +G +GL + +
Sbjct: 313 WAAIKSLRPGGVLVYSTCTLSYEENEANVKFMLEKGLKLEEQAVF--IGSEGLGIEKV-- 368
Query: 280 EDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
QRF P +R+ T GFFI +LRK
Sbjct: 369 ------QRFYP-----NRHL-TQGFFIARLRK 388
>gi|313225604|emb|CBY07078.1| unnamed protein product [Oikopleura dioica]
Length = 700
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 107/308 (34%), Positives = 149/308 (48%), Gaps = 50/308 (16%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV ++ S+V V DS++ I P LAGHY L Q G+
Sbjct: 239 LINRGVNLDPVGKWSKVGLVIYDSAVPIGA-TPEYLAGHYMLQSASSFLPVMALAPQEGE 297
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
KVLDMCAAPG K T+I+ LM +TG ++A DK+K R+ L +L S++ T YD
Sbjct: 298 KVLDMCAAPGGKTTYISQLMKNTGMVLANDKNKLRMKALVANSHRLGCSNVATCNYDGRS 357
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKL 207
T +Q FDR++ DAPC+G G +A DK ++ +IQK+L
Sbjct: 358 FPT----------IQG-GFDRVICDAPCAGTGVIAKDPSA-KLSKEDKDVRRIVHIQKEL 405
Query: 208 LQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQL 267
L A V G G ++YCTCSL VEENE V+ + L ++ V+LV+T +L
Sbjct: 406 LLAAIDSVDAKSKTG-------GYIIYCTCSLLVEENEWVVDYGL-KNRNVKLVETGLEL 457
Query: 268 GMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRKKYGEAPEIYI 321
G +G + RF P + T R N D GFFI K +K + PE
Sbjct: 458 GEEGFT--------KYRSWRFHPSMNKTKRYYPHINNMD--GFFIAKFKKTSNDIPEKQA 507
Query: 322 HPHLNDCI 329
P ND +
Sbjct: 508 KPGKNDTV 515
>gi|427719814|ref|YP_007067808.1| sun protein [Calothrix sp. PCC 7507]
gi|427352250|gb|AFY34974.1| sun protein [Calothrix sp. PCC 7507]
Length = 451
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 83/264 (31%), Positives = 132/264 (50%), Gaps = 30/264 (11%)
Query: 5 QSQCYCLWLDRAGFVSVLRLPARQR-PSLSIYCYALDILFRGV-----AVEITNVLSQVP 58
Q++ C+W++R+ + + P R ++ + A D+ + + A+ + +P
Sbjct: 169 QTEQLCVWMNRSPTIDLRINPLRTSLEAVEMALQAADVFVKRIPYLPQALRLIGSSGPIP 228
Query: 59 NV-ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALD 117
N+ +Q+ + L H LD QPG+ V+D+CAAPG K THIA LM D+G + A D
Sbjct: 229 NLPGFQEGWWTVQDSSAQLVSHLLDPQPGEVVIDVCAAPGGKTTHIAELMGDSGKVWACD 288
Query: 118 KSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSG 177
++ R+ KL+E ++L L SI+ DS + + DR+LLDAPCSG
Sbjct: 289 RTASRLRKLQENSRRLNLQSIEICTGDSRHFSQFYNVG-----------DRVLLDAPCSG 337
Query: 178 FGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC 237
G +A + + I A +Q +L+ +FV KK+G+LVY TC
Sbjct: 338 LGTLHRHADAR-WRQTPEAIAELAKLQAELISHTSKFV-----------KKNGVLVYATC 385
Query: 238 SLSVEENEAVIAWILHRHPEVELV 261
+L ENE VI+ L HP+ E+
Sbjct: 386 TLHPAENEGVISAFLAAHPDWEIA 409
>gi|242399817|ref|YP_002995242.1| Sun/NOL1/NOP nucleolar protein [Thermococcus sibiricus MM 739]
gi|242266211|gb|ACS90893.1| Sun/NOL1/NOP nucleolar protein [Thermococcus sibiricus MM 739]
Length = 383
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 90/275 (32%), Positives = 143/275 (52%), Gaps = 46/275 (16%)
Query: 41 ILFRGVAVEITNVLSQVPNV----ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAP 96
I RGVAVE+T ++P++ + + +Q LPS++A H LD + G ++DM AAP
Sbjct: 149 IATRGVAVEVTMPKFKLPSLNELESYEKGYFYVQTLPSMVASHVLDPKEGDLIIDMTAAP 208
Query: 97 GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI 156
G K +HIA L+ + G ++ALDKSK R++K++ +++L + +++ DS ++
Sbjct: 209 GGKTSHIAQLLENRGEILALDKSKNRLSKMKNELERLGVKNVKLIQMDSR--------NL 260
Query: 157 ERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVS 216
+ +Q D+ILLDAPC+ G RP + + K I + A QK + A
Sbjct: 261 PELGIQA---DKILLDAPCTALGVRPKLWETRT----PKDIDATARYQKHFINAA----- 308
Query: 217 LFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKD 276
I L+K G+LVY TC+LS EENE + ++L + ++E + +G G+
Sbjct: 309 ------IKSLRKGGVLVYSTCTLSYEENEGNVKYMLKKGLKLEEQKLF--IGSPGIGINK 360
Query: 277 LEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
+ QRF P T GFFI +LRK
Sbjct: 361 V--------QRFYP------HKHKTQGFFIARLRK 381
>gi|212224781|ref|YP_002308017.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus onnurineus NA1]
gi|212009738|gb|ACJ17120.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus onnurineus NA1]
Length = 383
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 93/272 (34%), Positives = 148/272 (54%), Gaps = 46/272 (16%)
Query: 44 RGVAVEITNVLSQVPNVA----LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNK 99
RG+AVE+T ++P+++ + Q+LPS++ L+ + ++DM AAPG K
Sbjct: 153 RGIAVEVTLPKFRLPSLSELESFKEGLFYAQSLPSMVVARILEPSEEELIIDMAAAPGGK 212
Query: 100 LTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERM 159
+HIA LM + G +IA+DKSK R+ K+EE +K+L + +++ DS ++ ++ IE
Sbjct: 213 TSHIAQLMQNRGEIIAIDKSKNRLRKMEEELKRLGVKNVKLIHMDSRKL---PELGIE-- 267
Query: 160 KLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFD 219
D+ILLDAPC+ G RP + + + K I++ A Q+ + A
Sbjct: 268 ------ADKILLDAPCTALGIRPKLWESRT----PKDIEATARYQRHFINAA-------- 309
Query: 220 WQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEA 279
I L+K G+LVY TC+LS EENEA + ++L + ++E Q+L +G G+ +
Sbjct: 310 ---IKSLRKGGVLVYSTCTLSYEENEANVKYMLSKGLKLE-EQSL-FIGSHGIGLDGV-- 362
Query: 280 EDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
QRF P +R+ T GFFI KLRK
Sbjct: 363 ------QRFYP-----NRHL-TQGFFIAKLRK 382
>gi|389851763|ref|YP_006353997.1| nol1-nop2-sun family nucleolar protein III [Pyrococcus sp. ST04]
gi|388249069|gb|AFK21922.1| nol1-nop2-sun family nucleolar protein III [Pyrococcus sp. ST04]
Length = 385
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 90/272 (33%), Positives = 137/272 (50%), Gaps = 46/272 (16%)
Query: 44 RGVAVEITNVLSQVPNVA----LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNK 99
RG+AVE+T ++P+++ + Q+LPS++ LD + ++DM AAPG K
Sbjct: 153 RGLAVEVTLPKFKLPSLSELKSFEKGYFYPQSLPSMITARVLDPKEEDVIIDMAAAPGGK 212
Query: 100 LTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERM 159
TH+A L+ + G +IA+DKSK R+ K+EE +K+L + +++ Q+D +
Sbjct: 213 TTHMAQLLQNRGEIIAIDKSKNRLKKMEENLKRLGVKNVKL-----------VQMDARNL 261
Query: 160 KLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFD 219
D+ILLDAPC+ G RP + + K ++A R+ F
Sbjct: 262 PELGIKADKILLDAPCTALGVRPKLWEERT---------------PKHIEATARYQRAFI 306
Query: 220 WQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEA 279
W I L+K GILVY TC+LS EENE + ++L + ++E +G G+ LE
Sbjct: 307 WAAIKSLRKGGILVYSTCTLSYEENEGNVKFMLKKGMKLEEQSIF--IGSPGIG---LEK 361
Query: 280 EDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
+QRF P T GFFI KLRK
Sbjct: 362 -----VQRFYP------HKHLTQGFFIAKLRK 382
>gi|433446078|ref|ZP_20410209.1| ribosomal RNA small subunit methyltransferase B [Anoxybacillus
flavithermus TNO-09.006]
gi|432000823|gb|ELK21715.1| ribosomal RNA small subunit methyltransferase B [Anoxybacillus
flavithermus TNO-09.006]
Length = 446
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 92/247 (37%), Positives = 129/247 (52%), Gaps = 38/247 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L + L VLD CAAPG K THIA MN+ G ++ALD +V +E+
Sbjct: 231 IQDESSMLVAYALSPNETDVVLDCCAAPGGKTTHIAERMNNRGRVVALDIHDHKVKLIEQ 290
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
K+L LS+I+ DS + +T + E+FDRIL+DAPCSG G ++P
Sbjct: 291 QAKRLGLSNIEAKQLDSRQAHT---------QFATETFDRILVDAPCSGLGVIRRKPEIK 341
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
A + +K I AN+Q +L+AV PLLK+ G LVY TC++ EENE
Sbjct: 342 YAKN----EKDITQLANVQLNILRAV-----------APLLKRGGTLVYSTCTVDREENE 386
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
VIA L HPE + +TL +A D+ ++Q L+P +D GFF
Sbjct: 387 QVIAQFLAEHPEYDRDETLASRLPSSVA----SYVDRGMLQ-----LLPHHVYSD--GFF 435
Query: 306 ICKLRKK 312
I L+KK
Sbjct: 436 IATLKKK 442
>gi|212639615|ref|YP_002316135.1| rRNA cytosine-C5-methylase [Anoxybacillus flavithermus WK1]
gi|212561095|gb|ACJ34150.1| rRNA cytosine-C5-methylase [Anoxybacillus flavithermus WK1]
Length = 446
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 92/247 (37%), Positives = 129/247 (52%), Gaps = 38/247 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L + L VLD CAAPG K THIA MN+ G ++ALD +V +E+
Sbjct: 231 IQDESSMLVAYALSPNETDVVLDCCAAPGGKTTHIAERMNNRGRVVALDIHDHKVKLIEQ 290
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
K+L LS+I+ DS + +T + E+FDRIL+DAPCSG G ++P
Sbjct: 291 QAKRLGLSNIEAKQLDSRQAHT---------QFAAETFDRILVDAPCSGLGVIRRKPEIK 341
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
A + +K I AN+Q +L+AV PLLK+ G LVY TC++ EENE
Sbjct: 342 YAKN----EKDITQLANVQLNILRAV-----------APLLKRGGTLVYSTCTVDREENE 386
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
VIA L HPE + +TL +A D+ ++Q L+P +D GFF
Sbjct: 387 QVIAQFLAEHPEYDRDETLASRLPSSVA----SYVDRGMLQ-----LLPHHVYSD--GFF 435
Query: 306 ICKLRKK 312
I L+KK
Sbjct: 436 IATLKKK 442
>gi|297530652|ref|YP_003671927.1| sun protein [Geobacillus sp. C56-T3]
gi|297253904|gb|ADI27350.1| sun protein [Geobacillus sp. C56-T3]
Length = 444
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 85/256 (33%), Positives = 124/256 (48%), Gaps = 56/256 (21%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L LD PG++VLD CAAPG K THIA M+ G ++A+D + +V +E+
Sbjct: 232 IQDESSMLVARALDPAPGERVLDCCAAPGGKTTHIAERMDGRGEVVAVDIHEHKVMLIEQ 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
K+L L ++ T DS R+ + ESFDR+L+DAPC+GFG ++P
Sbjct: 292 QAKRLGLDNVATLALDSRRLGE---------RFAPESFDRVLVDAPCTGFGVIRRKPEI- 341
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ I + IQ+ +L+A PLLKK G LVY TC++ EENE
Sbjct: 342 ---KYTKGKDAIAALVEIQQAILRA-----------AAPLLKKGGTLVYSTCTVEREENE 387
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNT------ 299
IA L HP+ L D ++ +R P+ P +
Sbjct: 388 EAIARFLADHPDFFL--------------------DASLAERMPKPVRPHVKGGMLQLLP 427
Query: 300 ---DTIGFFICKLRKK 312
D+ GFFI +LRK+
Sbjct: 428 HHFDSDGFFIARLRKR 443
>gi|315231566|ref|YP_004072002.1| ribosomal RNA small subunit methyltransferase B [Thermococcus
barophilus MP]
gi|315184594|gb|ADT84779.1| ribosomal RNA small subunit methyltransferase B [Thermococcus
barophilus MP]
Length = 384
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 91/272 (33%), Positives = 141/272 (51%), Gaps = 46/272 (16%)
Query: 44 RGVAVEITNVLSQVPNVA----LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNK 99
RG+AVE+T ++P+++ + Q+LPS++ L+ G ++DM AAPG K
Sbjct: 152 RGIAVEVTLPKFKLPSLSELKSFEKGYFYPQSLPSMVTARILEPNEGDLIIDMAAAPGGK 211
Query: 100 LTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERM 159
TH+A LM + G +IA+DKSK R+ K+EET+K+L + +++ DS + ++ I+
Sbjct: 212 TTHLAQLMQNRGEIIAIDKSKNRLRKMEETLKRLGVKNVKLVHMDSRNL---PELGIK-- 266
Query: 160 KLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFD 219
D+ILLDAPC+ G RP + + + K I + A Q+ + A
Sbjct: 267 ------ADKILLDAPCTALGVRPKLWESRT----PKDIIATARYQRHFINAA-------- 308
Query: 220 WQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEA 279
I L+K GILVY TC+LS EENE + +++ + +E +G G+ K++
Sbjct: 309 ---IKSLRKGGILVYSTCTLSYEENEGNVKYMIKKGLRLEKQSFF--IGSPGIGLKEV-- 361
Query: 280 EDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
QRF P T GFFI KLRK
Sbjct: 362 ------QRFYP------HKHLTQGFFIAKLRK 381
>gi|448237330|ref|YP_007401388.1| ribosomal RNA small subunit methyltransferase B [Geobacillus sp.
GHH01]
gi|445206172|gb|AGE21637.1| ribosomal RNA small subunit methyltransferase B [Geobacillus sp.
GHH01]
Length = 444
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 85/256 (33%), Positives = 123/256 (48%), Gaps = 56/256 (21%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L LD PG++VLD CAAPG K THIA M G ++A+D + +V +E+
Sbjct: 232 IQDESSMLVARALDPAPGERVLDCCAAPGGKTTHIAERMGGRGEVVAVDIHEHKVMLIEQ 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
K+L L ++ T DS R+ + ESFDR+L+DAPC+GFG ++P
Sbjct: 292 QAKRLGLDNVATLALDSRRLGE---------RFAPESFDRVLVDAPCTGFGVIRRKPEI- 341
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ I + IQ+ +L+A PLLKK G LVY TC++ EENE
Sbjct: 342 ---KYTKGKDAIAALVEIQQAILRAA-----------APLLKKGGTLVYSTCTVEREENE 387
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNT------ 299
IA L HP+ L D ++ +R P+ P +
Sbjct: 388 EAIARFLADHPDFFL--------------------DASLAERMPKPVRPHVKGGMLQLLP 427
Query: 300 ---DTIGFFICKLRKK 312
D+ GFFI +LRK+
Sbjct: 428 HHFDSDGFFIARLRKR 443
>gi|375081855|ref|ZP_09728931.1| Sun/NOL1/NOP nucleolar protein [Thermococcus litoralis DSM 5473]
gi|374743469|gb|EHR79831.1| Sun/NOL1/NOP nucleolar protein [Thermococcus litoralis DSM 5473]
Length = 383
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 90/272 (33%), Positives = 140/272 (51%), Gaps = 46/272 (16%)
Query: 44 RGVAVEITNVLSQVPNV----ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNK 99
RG+AVE+T ++P++ A + Q+LPS++ H L+ Q ++DM AAPG K
Sbjct: 152 RGIAVEVTLPKFKLPSLNELKAYEKGYFYAQSLPSMVVAHILEPQEEDLIIDMAAAPGGK 211
Query: 100 LTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERM 159
+HIA L+ + G +IA+DKS+ R+ K+E+ +K+L + +++ DS + + I+
Sbjct: 212 TSHIAQLLENRGEIIAIDKSRNRLAKMEKELKRLGVKNVKLVQMDSRNL---PGLGIKA- 267
Query: 160 KLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFD 219
D+ILLDAPC+ G RP + + K ++A R+ F
Sbjct: 268 -------DKILLDAPCTALGVRPKLWETRT---------------PKDIEATVRYQRHFI 305
Query: 220 WQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEA 279
I L+K GILVY TC+LS EENE + ++L + ++E + +G GL K++
Sbjct: 306 NAAIKSLRKGGILVYSTCTLSYEENEGNVQYMLKKGLKLEEQKIF--IGSPGLGIKEV-- 361
Query: 280 EDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
QRF P T GFFI KLRK
Sbjct: 362 ------QRFYP------HKHLTQGFFIAKLRK 381
>gi|261419371|ref|YP_003253053.1| sun protein [Geobacillus sp. Y412MC61]
gi|319766186|ref|YP_004131687.1| sun protein [Geobacillus sp. Y412MC52]
gi|261375828|gb|ACX78571.1| sun protein [Geobacillus sp. Y412MC61]
gi|317111052|gb|ADU93544.1| sun protein [Geobacillus sp. Y412MC52]
Length = 444
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/256 (33%), Positives = 124/256 (48%), Gaps = 56/256 (21%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L LD PG++VLD CAAPG K THIA M+ G ++A+D + +V +E+
Sbjct: 232 IQDESSMLVARALDPAPGERVLDCCAAPGGKTTHIAERMDGRGEVVAVDIHEHKVMLIEQ 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
K+L L ++ T DS R+ + ESFDR+L+DAPC+GFG ++P
Sbjct: 292 QAKRLGLDNVATLSLDSRRLGE---------RFAPESFDRVLVDAPCTGFGVIRRKPEI- 341
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ I + IQ+ +L+A PLLKK G LVY TC++ EENE
Sbjct: 342 ---KYTKGKDAIAALVEIQQAILRA-----------AAPLLKKGGTLVYSTCTVEREENE 387
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNT------ 299
IA L HP+ L D ++ +R P+ P +
Sbjct: 388 EAIARFLADHPDFFL--------------------DASLAERMPKPVRPHVKGGMLQLLP 427
Query: 300 ---DTIGFFICKLRKK 312
D+ GFFI +LRK+
Sbjct: 428 HHFDSDGFFIARLRKR 443
>gi|403383389|ref|ZP_10925446.1| ribosomal RNA small subunit methyltransferase B [Kurthia sp. JC30]
Length = 452
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 125/249 (50%), Gaps = 44/249 (17%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L + LDVQPG +V DMCAAPG K THIA MN+ G LIA D K ++ ++E
Sbjct: 242 IQDESSMLPAYALDVQPGMRVYDMCAAPGGKTTHIAEKMNNEGELIATDLHKHKIKLIQE 301
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
+L LS I+T V D + + + SFDRIL+DAPCSG G ++P
Sbjct: 302 NADRLGLSIIKTSVLDGRKATD---------EFEAASFDRILVDAPCSGLGVIRRKPDI- 351
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ ++ S IQ LL A Y LLK G +VY TC++ EN
Sbjct: 352 ---KYTKTEEDFASLHKIQVDLLDAAYE-----------LLKPQGKMVYSTCTIDKMENN 397
Query: 246 AVIAWILHRHPEVEL--VQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIG 303
+ L +HP+++L V+ P+ + GL ++ +MQ F P N+D G
Sbjct: 398 GTVEAFLAKHPDMQLAPVENAPEAAV-GL-------REEGMMQVF-----PQQFNSD--G 442
Query: 304 FFICKLRKK 312
FF+ KK
Sbjct: 443 FFVASFVKK 451
>gi|434391954|ref|YP_007126901.1| sun protein [Gloeocapsa sp. PCC 7428]
gi|428263795|gb|AFZ29741.1| sun protein [Gloeocapsa sp. PCC 7428]
Length = 446
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 105/324 (32%), Positives = 152/324 (46%), Gaps = 58/324 (17%)
Query: 11 LWLDRAGFVSVLRLPA--RQRPSLSIYCYALDILFRGVAVEITNVLSQVPNVA------- 61
+WL + G+ +L A Q P++ + L VA + V VA
Sbjct: 157 VWLKQFGYKETEQLCAWFNQPPAIDLRINPLRASVEKVATALQEAEVGVTRVANLPQALR 216
Query: 62 LDSSMGILQNLPSILAG-------------HYLDVQPGQKVLDMCAAPGNKLTHIALLMN 108
+S G ++ LP AG H LD QPG+ V+D CAAPG K THIA LM
Sbjct: 217 FTTSTGAIEKLPGFDAGWWTVQDSSAQLVSHILDPQPGEVVIDACAAPGGKTTHIAELMQ 276
Query: 109 DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDR 168
DTGT+ A D++ R+ KL++ I +LQL SIQ DS N ++I DR
Sbjct: 277 DTGTIWACDRTVSRLKKLQQNIARLQLKSIQICPGDSR--NLPHFVNIA---------DR 325
Query: 169 ILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKK 228
+LLDAPCSG G +A + + +K +Q +LL V ++ K
Sbjct: 326 VLLDAPCSGLGTLHRHADAR-WRQTPETVKELTVLQTELLTHVSTWI-----------KP 373
Query: 229 DGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRF 288
G+LVY TC+L+ EENEA++ L +HP + P G+ + A MQ
Sbjct: 374 GGVLVYATCTLNSEENEAIVQAFLTQHPCWRIEH--PAANSIGVPY----ATSSGWMQ-- 425
Query: 289 GPPLIPTDRNTDTIGFFICKLRKK 312
++P ++ D GFFI +L+K+
Sbjct: 426 ---VLPHHQSMD--GFFIVRLQKE 444
>gi|410456987|ref|ZP_11310834.1| 16S rRNA methyltransferase B [Bacillus bataviensis LMG 21833]
gi|409926961|gb|EKN64112.1| 16S rRNA methyltransferase B [Bacillus bataviensis LMG 21833]
Length = 449
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 89/257 (34%), Positives = 133/257 (51%), Gaps = 40/257 (15%)
Query: 60 VALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKS 119
+A M +Q+ S+LA + L + VLD CAAPG K THIA + +TG +I++D
Sbjct: 228 IAFKYGMLTIQDESSMLAAYALGAMENEFVLDACAAPGGKSTHIAEKLENTGEVISVDLH 287
Query: 120 KPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG 179
+ +V + + ++L LS+I+T+V DS + + K + E+F RILLDAPCSG G
Sbjct: 288 QHKVKLINDNARRLGLSNIKTNVSDSRLL---------QEKFKDETFHRILLDAPCSGLG 338
Query: 180 ---QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT 236
++P + +K + +NIQ+ LL +V PLLKK GILVY T
Sbjct: 339 VMRRKPDM----KYTKTEKDLNRLSNIQQNLLTSV-----------APLLKKGGILVYST 383
Query: 237 CSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAED-QAVMQRFGPPLIPT 295
C++ EEN+ + L +PE E L+ K+ E Q ++ F + P
Sbjct: 384 CTVDKEENDNTVKTFLENNPEFE----------GDLSFKNRMPEAVQPLITGFELQIFPQ 433
Query: 296 DRNTDTIGFFICKLRKK 312
D +D GF+I LRKK
Sbjct: 434 DFGSD--GFYIAALRKK 448
>gi|332158464|ref|YP_004423743.1| nol1-nop2-sun family nucleolar protein III [Pyrococcus sp. NA2]
gi|331033927|gb|AEC51739.1| nol1-nop2-sun family nucleolar protein III [Pyrococcus sp. NA2]
Length = 388
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/279 (32%), Positives = 135/279 (48%), Gaps = 60/279 (21%)
Query: 44 RGVAVEITNVLSQVPNVA----LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNK 99
+G+AVE+T ++P+++ + Q LPS++ L+ + ++DM AAPG K
Sbjct: 155 KGLAVEVTLPKFKLPSLSELKSFEKGYFYPQGLPSMVTARILEPREDDVIIDMTAAPGGK 214
Query: 100 LTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERM 159
THIA L+ + G +IA+DKSK R+ K+EE +K+L + +++ Q+D +
Sbjct: 215 TTHIAQLLQNRGEIIAIDKSKNRLKKMEENLKRLGVKNVKL-----------IQMDARNL 263
Query: 160 KLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFD 219
D+ILLDAPC+ G RP + + K ++A R+ F
Sbjct: 264 PDLGIKADKILLDAPCTALGVRPKLWEERT---------------PKHIEATARYQRAFI 308
Query: 220 WQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEA 279
W I LKK GILVY TC+LS EENE + ++L + GMK
Sbjct: 309 WAAIKSLKKGGILVYSTCTLSYEENEGNVKFMLRK-------------GMK--------L 347
Query: 280 EDQAVMQRFGPPLIPTDRNTD-------TIGFFICKLRK 311
EDQ++ G P I D+ T GFFI KLRK
Sbjct: 348 EDQSIF--IGSPGIGIDKVQRFYPHKHLTQGFFIAKLRK 384
>gi|390961255|ref|YP_006425089.1| nol1-nop2-sun family nucleolar protein III [Thermococcus sp. CL1]
gi|390519563|gb|AFL95295.1| nol1-nop2-sun family nucleolar protein III [Thermococcus sp. CL1]
Length = 385
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 89/272 (32%), Positives = 148/272 (54%), Gaps = 46/272 (16%)
Query: 44 RGVAVEITNVLSQVPNVA----LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNK 99
RG+AVE+T ++P+++ + Q+LPS++ H L+ + ++DM AAPG K
Sbjct: 155 RGLAVEVTLPKFRLPSLSELESFKEGLFYAQSLPSMVVAHVLEPGEEELIVDMAAAPGGK 214
Query: 100 LTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERM 159
+HIA LM + G +IA+DKSK R+ K+E +++L + +++ DS R+ ++ IE
Sbjct: 215 TSHIAQLMQNRGEIIAMDKSKNRLKKMEGELERLGVKNVKPIHMDSRRL---PELGIE-- 269
Query: 160 KLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFD 219
D+ILLDAPC+ G RP + + + K I++ A Q+ + A
Sbjct: 270 ------ADKILLDAPCTALGIRPKLWESRT----PKDIEATARYQRHFINAA-------- 311
Query: 220 WQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEA 279
I L++ G+LVY TC+LS EENEA + +++ + ++E Q+L +G G+ ++
Sbjct: 312 ---IKSLRRGGVLVYSTCTLSYEENEANVKYVMSKGLKLE-EQSL-FIGSSGMGIDEV-- 364
Query: 280 EDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
QRF P +R+ T GFFI + RK
Sbjct: 365 ------QRFYP-----NRHL-TQGFFIARFRK 384
>gi|403667672|ref|ZP_10932972.1| ribosomal RNA small subunit methyltransferase B [Kurthia sp. JC8E]
Length = 454
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 131/257 (50%), Gaps = 44/257 (17%)
Query: 61 ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSK 120
A + + +Q+ S++ + LDVQPG +V DMCAAPG K THIA MN+ GT+IA D K
Sbjct: 233 AFEEGVITIQDESSMIPAYALDVQPGMRVYDMCAAPGGKTTHIAEKMNNEGTVIATDLHK 292
Query: 121 PRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG- 179
++ ++E+ K+L LS I+ + D + + +K+SFDRIL+DAPCSG G
Sbjct: 293 HKIKLVDESAKRLGLSIIEAQMLDGRKATE---------QFEKQSFDRILVDAPCSGLGV 343
Query: 180 --QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC 237
++P S + +S IQ LL + Y LLK G +VY TC
Sbjct: 344 IRRKPDIKYTKS----ESDFESLHKIQLDLLDSAYE-----------LLKPQGKMVYSTC 388
Query: 238 SLSVEENEAVIAWILHRHPEVEL--VQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPT 295
++ EN + L +H ++ L V+ P++ + L +Q +MQ F P
Sbjct: 389 TIDKMENNGTVEAFLAKHTDMMLAPVENAPEV-LTTL-------REQGMMQVF-----PQ 435
Query: 296 DRNTDTIGFFICKLRKK 312
D N+D GFF+ KK
Sbjct: 436 DFNSD--GFFVASFVKK 450
>gi|18976541|ref|NP_577898.1| nol1-nop2-sun family nucleolar protein III [Pyrococcus furiosus DSM
3638]
gi|397652118|ref|YP_006492699.1| nol1-nop2-sun family nucleolar protein III [Pyrococcus furiosus
COM1]
gi|18892094|gb|AAL80293.1| putative nucleolar protein III (nol1-nop2-sun family) [Pyrococcus
furiosus DSM 3638]
gi|393189709|gb|AFN04407.1| nol1-nop2-sun family nucleolar protein III [Pyrococcus furiosus
COM1]
Length = 386
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 89/272 (32%), Positives = 143/272 (52%), Gaps = 46/272 (16%)
Query: 44 RGVAVEITNVLSQVPNVA----LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNK 99
RG+AVE+T ++P+++ + Q+LPS++ L+ + + ++DM AAPG K
Sbjct: 153 RGLAVEVTLPKFKLPSLSELKSFEKGYFYPQSLPSMVTSRVLEPKEEEIIIDMAAAPGGK 212
Query: 100 LTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERM 159
+HIA L+ + G +IA+DKSK R+ K+EE +K+L + +++ D+ + ++ I+
Sbjct: 213 TSHIAQLLQNRGEIIAIDKSKNRLKKMEENLKRLGVKNVKLIQMDARNL---PELGIK-- 267
Query: 160 KLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFD 219
D+ILLDAPC+ G RP + + K ++A R+ F
Sbjct: 268 ------ADKILLDAPCTALGVRPKLWELRT---------------PKDIEATARYQRAFI 306
Query: 220 WQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEA 279
W I L+K GILVY TC+LS EENE + ++L + ++E Q+L +G G+ ++
Sbjct: 307 WAAIKSLRKGGILVYSTCTLSYEENEGNVKFMLKKGMKLE-EQSL-FIGSPGIGIDEV-- 362
Query: 280 EDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
QRF P T GFFI KLRK
Sbjct: 363 ------QRFYP------HKHLTQGFFIAKLRK 382
>gi|386725760|ref|YP_006192086.1| 16S rRNA methyltransferase B [Paenibacillus mucilaginosus K02]
gi|384092885|gb|AFH64321.1| 16S rRNA methyltransferase B [Paenibacillus mucilaginosus K02]
Length = 505
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 89/261 (34%), Positives = 134/261 (51%), Gaps = 41/261 (15%)
Query: 59 NVAL--DSSMGI--LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLI 114
N+AL D + G+ +Q+ S+L ++D QPG++VLD CAAPG K TH+A M G ++
Sbjct: 278 NMALTQDYAEGLYSIQDESSMLVAEWVDPQPGERVLDCCAAPGGKTTHLAEKMQGRGEIV 337
Query: 115 ALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAP 174
A D + + + E +L SI T D+ R+ R ESFDRILLDAP
Sbjct: 338 ACDVHEHKHGLIREQAVRLGHESITTLTADARRL---------REHYAPESFDRILLDAP 388
Query: 175 CSGFG---QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGI 231
CSG G ++P + + ++ +IQ++LL+AV+ LLK G+
Sbjct: 389 CSGLGVIRRKPDM----KWTKTEAELGEICSIQQELLEAVH-----------GLLKPGGV 433
Query: 232 LVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPP 291
LVY TC++ EN + L RHPE +G K+ EA ++A +Q
Sbjct: 434 LVYSTCTVEPAENGEAVRAFLGRHPEFTPDAPPAAARPEG---KEAEAVEEASVQ----- 485
Query: 292 LIPTDRNTDTIGFFICKLRKK 312
++P D +D GF+I +LRK+
Sbjct: 486 IMPYDYGSD--GFYIARLRKR 504
>gi|379722975|ref|YP_005315106.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus
mucilaginosus 3016]
gi|378571647|gb|AFC31957.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus
mucilaginosus 3016]
Length = 541
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 89/261 (34%), Positives = 134/261 (51%), Gaps = 41/261 (15%)
Query: 59 NVAL--DSSMGI--LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLI 114
N+AL D + G+ +Q+ S+L ++D QPG++VLD CAAPG K TH+A M G ++
Sbjct: 314 NMALTQDYAEGLYSIQDESSMLVAEWVDPQPGERVLDCCAAPGGKTTHLAEKMQGRGEIV 373
Query: 115 ALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAP 174
A D + + + E +L SI T D+ R+ R ESFDRILLDAP
Sbjct: 374 ACDVHEHKHGLIREQAVRLGHESITTLTADARRL---------REHYAPESFDRILLDAP 424
Query: 175 CSGFG---QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGI 231
CSG G ++P + + ++ +IQ++LL+AV+ LLK G+
Sbjct: 425 CSGLGVIRRKPDM----KWTKTEAELGEICSIQQELLEAVH-----------GLLKPGGV 469
Query: 232 LVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPP 291
LVY TC++ EN + L RHPE +G K+ EA ++A +Q
Sbjct: 470 LVYSTCTVEPAENGEAVRAFLGRHPEFTPDAPPAAARPEG---KEAEAVEEASVQ----- 521
Query: 292 LIPTDRNTDTIGFFICKLRKK 312
++P D +D GF+I +LRK+
Sbjct: 522 IMPYDYGSD--GFYIARLRKR 540
>gi|407796647|ref|ZP_11143600.1| Sun protein [Salimicrobium sp. MJ3]
gi|407019163|gb|EKE31882.1| Sun protein [Salimicrobium sp. MJ3]
Length = 450
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 100/328 (30%), Positives = 154/328 (46%), Gaps = 66/328 (20%)
Query: 12 WLDRAGFVSV--------LRLPA--RQRPSLSIYCYALDILFR-GVAVEITNVLSQ---- 56
W+D+ G+ + LR+P R +P L A+ L R G VE + SQ
Sbjct: 160 WIDQYGYETTESMCMTNQLRMPESIRVQPLLLSRGEAVTELERDGFEVEESRFSSQGIIL 219
Query: 57 -----VPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTG 111
+ + + +Q+ S+L ++ +PGQ VLD CAAPG K THI+ M + G
Sbjct: 220 HEGNIIKHRLFREGLVTIQDQSSMLVAELMNPEPGQTVLDACAAPGGKTTHISEKMKNEG 279
Query: 112 TLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILL 171
T+ A D K + + E L+L++I YD+ ++ K + E+FD +L+
Sbjct: 280 TVYAYDLHKKKAALIREKANILRLTNIHAENYDARKLQD---------KHENETFDHVLV 330
Query: 172 DAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQ-KKLLQAVYRFVSLFDW---QGIPLLK 227
DAPCSGFG I+S +I+ K + +YR + D PLLK
Sbjct: 331 DAPCSGFGV----------------IRSKPDIKYSKKEEDIYRLREVQDHILDHVAPLLK 374
Query: 228 KDGILVYCTCSLSVEENEAVIAWILHRHPEVEL---VQTLPQLGMKGLAHKDLEAEDQAV 284
++G+LVY TC++ EN+ + L RHP E+ V +P+ L H+ V
Sbjct: 375 ENGLLVYSTCTVDRHENDEAVRDFLKRHPAFEMEDFVDRVPE----DLQHR--------V 422
Query: 285 MQRFGPPLIPTDRNTDTIGFFICKLRKK 312
+ G + P D ++D GFF+ LRKK
Sbjct: 423 ITGIGLQIFPQDADSD--GFFVTLLRKK 448
>gi|319649620|ref|ZP_08003776.1| sun protein [Bacillus sp. 2_A_57_CT2]
gi|317398782|gb|EFV79464.1| sun protein [Bacillus sp. 2_A_57_CT2]
Length = 451
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 128/247 (51%), Gaps = 38/247 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+LA + L P +K+LD CAAPG K THIA M +TG +I+LD + +V + +
Sbjct: 238 IQDESSMLAAYALGGNPNEKILDACAAPGGKTTHIAEKMQNTGQVISLDLHEHKVKLIND 297
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
+L LS+I+T+ DS ++ +KESFDRIL+DAPCSG G ++P
Sbjct: 298 NADRLGLSNIKTNALDSRKVQEH---------YEKESFDRILVDAPCSGLGVMRRKPDM- 347
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ + + IQ+ LL AV PLLKK GILVY TC++ EEN+
Sbjct: 348 ---KYTKKEDDLYHLHKIQRNLLDAVS-----------PLLKKGGILVYSTCTVDKEENQ 393
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
V+ L + E E ++ + K +A + F ++P D +D GF+
Sbjct: 394 HVVQSFLKNNAEFEGDISVRERMPKAIA---------PFIDNFELQILPQDIGSD--GFY 442
Query: 306 ICKLRKK 312
I LRKK
Sbjct: 443 IACLRKK 449
>gi|116873257|ref|YP_850038.1| sun protein [Listeria welshimeri serovar 6b str. SLCC5334]
gi|116742135|emb|CAK21259.1| sun protein [Listeria welshimeri serovar 6b str. SLCC5334]
Length = 444
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 92/247 (37%), Positives = 132/247 (53%), Gaps = 43/247 (17%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+LA + L ++ VLD CAAPG K THIA M+ TG + ALD + + +++
Sbjct: 234 IQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQ 293
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
K+LQL +I+T D+ +T + E+FDRIL+DAPCSGFG ++P
Sbjct: 294 AAKRLQLLNIRTAHQDARTASTM---------FEPETFDRILVDAPCSGFGVLRRKPDIK 344
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
A + +K I A IQ +L V + V K++GILVY TC++ EENE
Sbjct: 345 YAKT----EKDIHKLAEIQLAILDDVSQLV-----------KENGILVYSTCTIDKEENE 389
Query: 246 AVIAWILHRHPEVELVQ-TLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
V+ L +HPE L TLP+ LAH ++ +D L+PTD +D GF
Sbjct: 390 TVLRAFLEKHPEFSLEPVTLPE----KLAH--IKKDDFV-------QLLPTDIGSD--GF 434
Query: 305 FICKLRK 311
F+ LRK
Sbjct: 435 FVSSLRK 441
>gi|138894694|ref|YP_001125147.1| 16S rRNA m(5)C 967 methyltransferase [Geobacillus
thermodenitrificans NG80-2]
gi|196247686|ref|ZP_03146388.1| sun protein [Geobacillus sp. G11MC16]
gi|134266207|gb|ABO66402.1| 16S rRNA m(5)C 967 methyltransferase [Geobacillus
thermodenitrificans NG80-2]
gi|196212470|gb|EDY07227.1| sun protein [Geobacillus sp. G11MC16]
Length = 444
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 89/259 (34%), Positives = 129/259 (49%), Gaps = 46/259 (17%)
Query: 61 ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSK 120
A S +Q+ S+L LD G++VLD CAAPG K THIA M+ G ++A+D +
Sbjct: 224 AFHSGWLTIQDESSMLVARALDPAAGERVLDCCAAPGGKTTHIAERMDGRGEVVAVDIHE 283
Query: 121 PRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG- 179
+V +E+ ++L L +I+T DS R+ ESFDRIL+DAPC+GFG
Sbjct: 284 HKVKLIEQQAQRLGLDNIRTLALDSRRLGEW---------FAPESFDRILVDAPCTGFGV 334
Query: 180 --QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC 237
++P + + + + IQ+ +L+A PLLKK G LVY TC
Sbjct: 335 IRRKPEI----KYTKGNDDVAALVEIQQAILRAA-----------APLLKKGGTLVYSTC 379
Query: 238 SLSVEENEAVIAWILHRHPEV----ELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLI 293
++ EENE IA L HP+ LV+ LP + +Q+ L+
Sbjct: 380 TIEREENEEAIARFLADHPDFSLDDRLVERLPDAV-------------RPYVQKGMLQLL 426
Query: 294 PTDRNTDTIGFFICKLRKK 312
P ++D GFFI +LRKK
Sbjct: 427 PHYFDSD--GFFIARLRKK 443
>gi|402297531|ref|ZP_10817298.1| 16S rRNA methyltransferase B [Bacillus alcalophilus ATCC 27647]
gi|401727206|gb|EJT00399.1| 16S rRNA methyltransferase B [Bacillus alcalophilus ATCC 27647]
Length = 448
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 93/259 (35%), Positives = 130/259 (50%), Gaps = 44/259 (16%)
Query: 61 ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSK 120
A S + Q+ S+L L + G+ +LD CAAPG K THIA LMN+ G+L+++D +
Sbjct: 227 AYRSGLFTAQDESSMLVAKALGPKAGEHILDSCAAPGGKSTHIAELMNNEGSLLSVDLHE 286
Query: 121 PRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG- 179
+V + E K+L LS I+ D + SQ K +SFD ILLDAPCSG G
Sbjct: 287 HKVQLIREQAKRLDLSMIEVVAAD---VRAFSQ------KTPAQSFDAILLDAPCSGLGV 337
Query: 180 --QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC 237
++P A + I+ A IQ +L+AV PLLKK G LVY TC
Sbjct: 338 IRRKPDIKWAKK----ESDIQDIAEIQAMILEAV-----------APLLKKGGRLVYSTC 382
Query: 238 SLSVEENEAVIAWILHRHPE----VELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLI 293
++ EENEA++ + HPE + L LP+ ++ +KD ++
Sbjct: 383 TIDQEENEAIVEHFIQTHPEFQWDITLSDRLPEEIVQSKRYKDGYV-----------TIL 431
Query: 294 PTDRNTDTIGFFICKLRKK 312
P D TD GFFI L+KK
Sbjct: 432 PHDYETD--GFFIASLKKK 448
>gi|456012702|gb|EMF46390.1| Ribosomal RNA small subunit methyltransferase B [Planococcus
halocryophilus Or1]
Length = 403
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 126/244 (51%), Gaps = 38/244 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L + L V+PG VLDMCAAPG K THIA M ++GTL ALD + +V ++E
Sbjct: 190 IQDESSMLPAYALQVEPGMTVLDMCAAPGGKTTHIAEKMKNSGTLYALDLHQHKVKLIDE 249
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
++L + I++ V D + +ER +E FDRIL+DAPCSG G
Sbjct: 250 NAERLGHTVIESTVGDGKQ-------SVER--FGEEKFDRILVDAPCSGLG----VIKRK 296
Query: 189 SFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVI 248
+ KK + +A +Q+ +Q + L D Q LLK+DGILVY TC++ EN
Sbjct: 297 PDIKYTKKEQDFARLQE--IQ-----IELLD-QAARLLKEDGILVYSTCTVDAVENRGTA 348
Query: 249 AWILHRHPEVELVQ-TLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
L HPE+E +Q LP G+ H +Q F P D +D GFFI
Sbjct: 349 ERFLKEHPEMEKIQAALP--ATMGIKHTGF-------VQVF-----PQDYGSD--GFFIA 392
Query: 308 KLRK 311
+K
Sbjct: 393 AFKK 396
>gi|89098704|ref|ZP_01171586.1| sun protein [Bacillus sp. NRRL B-14911]
gi|89086666|gb|EAR65785.1| sun protein [Bacillus sp. NRRL B-14911]
Length = 448
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 90/251 (35%), Positives = 125/251 (49%), Gaps = 46/251 (18%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+LA + L + VLD CAAPG K THIA + +TG +I+LD + +V + +
Sbjct: 235 IQDESSMLAAYALGAEKDNHVLDACAAPGGKTTHIAEKLGNTGQVISLDLHEHKVKLIAD 294
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
++L LS+I+T DS + SFDRILLDAPCSG G ++P
Sbjct: 295 NARRLGLSNIETKAMDSRTVQEH---------FNAGSFDRILLDAPCSGLGVMRRKPDM- 344
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ ++ I +Q KLL+AV PLLK G LVY TC++ EENE
Sbjct: 345 ---KYTKKEEDIMHLQKVQLKLLEAV-----------APLLKDGGTLVYSTCTVDREENE 390
Query: 246 AVIAWILHRHPEV----ELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDT 301
+ L HPE L + LP +K LA KD E + ++P D +D
Sbjct: 391 NAVRQFLDSHPEFSGDHSLAERLPD-AVKALA-KDFELQ-----------ILPQDLGSD- 436
Query: 302 IGFFICKLRKK 312
GF+I LRKK
Sbjct: 437 -GFYIASLRKK 446
>gi|409993041|ref|ZP_11276199.1| 16S rRNA methyltransferase B [Arthrospira platensis str. Paraca]
gi|291566504|dbj|BAI88776.1| ribosomal RNA small subunit methyltransferase B [Arthrospira
platensis NIES-39]
gi|409936102|gb|EKN77608.1| 16S rRNA methyltransferase B [Arthrospira platensis str. Paraca]
Length = 447
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 102/327 (31%), Positives = 149/327 (45%), Gaps = 73/327 (22%)
Query: 5 QSQCYCLWLDRAGFVSVLRLPARQRPSLSIYCYALDILFRGVAVE------ITNVLSQVP 58
Q+Q C W + Q PSL + L V I + L ++P
Sbjct: 172 QTQQLCDWFN-------------QSPSLDLRINPLSTTLETVETAFQQQEIIGSPLPKLP 218
Query: 59 -NVALDSSMGILQNLPSI-------------LAGHYLDVQPGQKVLDMCAAPGNKLTHIA 104
L S +G ++NLP L G+ +D QPG+ ++D CAAPG K THIA
Sbjct: 219 QGWRLSSGVGAIRNLPGYDQGWWTVQDASAQLVGYIVDPQPGEIIIDACAAPGGKTTHIA 278
Query: 105 LLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE 164
LM D G +IA+D+S R+ L++ I +L+L SIQ V DS + +
Sbjct: 279 ELMGDNGKVIAIDRSPGRLKPLKQNINRLKLRSIQVEVGDSRHFPQYNNM---------- 328
Query: 165 SFDRILLDAPCSGFGQRPMFYNANS-FLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGI 223
DR+LLDAPCSG G + ++S + +I+ + +Q +LL+ V +V
Sbjct: 329 -ADRVLLDAPCSGGGT--LHRRSDSRWRQTPDQIRQLSQLQAELLEMVSHWV-------- 377
Query: 224 PLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQA 283
K G+LVY TC+L +ENE IA L RHP + +P L + +E +
Sbjct: 378 ---KPGGVLVYATCTLYPQENEWAIASFLSRHPSWRV--EVPNLDLP------VEPTKEG 426
Query: 284 VMQRFGPPLIPTDRNTDTIGFFICKLR 310
++ + P D GFFI KLR
Sbjct: 427 WLK-----IWPHRHQMD--GFFIAKLR 446
>gi|337750137|ref|YP_004644299.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus
mucilaginosus KNP414]
gi|336301326|gb|AEI44429.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus
mucilaginosus KNP414]
Length = 485
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/261 (33%), Positives = 133/261 (50%), Gaps = 41/261 (15%)
Query: 59 NVAL--DSSMGI--LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLI 114
N+AL D + G+ +Q+ S+L ++D QPG++VLD CAAPG K TH+A M G ++
Sbjct: 258 NMALTQDYAEGLYSIQDESSMLVAEWVDPQPGERVLDCCAAPGGKTTHLAEKMQGRGEIV 317
Query: 115 ALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAP 174
A D + + + E +L SI T D+ R+ ESFDRILLDAP
Sbjct: 318 ACDVHEHKHGLIREQADRLGHESITTLTADARRLPE---------HYAPESFDRILLDAP 368
Query: 175 CSGFG---QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGI 231
CSG G ++P + + ++ +IQ++LL+AV+ LLK G+
Sbjct: 369 CSGLGVIRRKPDM----KWTKTEAELGDICSIQQELLEAVH-----------GLLKPGGV 413
Query: 232 LVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPP 291
LVY TC++ EN + L RHPE +G K+ EA ++A +Q
Sbjct: 414 LVYSTCTVEPAENGEAVRAFLGRHPEFTPDAPPAAARPEG---KEAEAVEEASVQ----- 465
Query: 292 LIPTDRNTDTIGFFICKLRKK 312
++P D +D GF+I +LRK+
Sbjct: 466 IMPYDYGSD--GFYIARLRKR 484
>gi|209524134|ref|ZP_03272685.1| sun protein [Arthrospira maxima CS-328]
gi|376004062|ref|ZP_09781832.1| Ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Arthrospira sp. PCC
8005]
gi|423066085|ref|ZP_17054875.1| sun protein [Arthrospira platensis C1]
gi|209495509|gb|EDZ95813.1| sun protein [Arthrospira maxima CS-328]
gi|375327556|emb|CCE17585.1| Ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Arthrospira sp. PCC
8005]
gi|406712424|gb|EKD07610.1| sun protein [Arthrospira platensis C1]
Length = 458
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/248 (34%), Positives = 124/248 (50%), Gaps = 38/248 (15%)
Query: 63 DSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPR 122
D +Q+ + L G+ +D QPG+ ++D CAAPG K THIA LM D G +IA+D+S R
Sbjct: 237 DQGWWTVQDASAQLVGYVVDPQPGEIIIDACAAPGGKTTHIAELMGDNGKIIAIDRSPGR 296
Query: 123 VTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRP 182
+ L++ IK+L+L SIQ V DS + DR+LLDAPCSG G
Sbjct: 297 LKPLQQNIKRLKLRSIQVEVGDS-----------RHFPQYNNTADRVLLDAPCSGGGTLH 345
Query: 183 MFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVE 242
+A + +I+ + +Q +LL+ V +V K G+LVY TC+L +
Sbjct: 346 RRSDAR-WRQTPDQIRQLSQLQAELLEMVSHWV-----------KPGGVLVYATCTLHPQ 393
Query: 243 ENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTI 302
ENE IA L RHP + +P + + +E + ++ + P D
Sbjct: 394 ENEWAIASFLSRHPTWRV--EVPNIDLP------VEPTKEGWLK-----IWPHRHQMD-- 438
Query: 303 GFFICKLR 310
GFFI KLR
Sbjct: 439 GFFIAKLR 446
>gi|347549218|ref|YP_004855546.1| putative RNA-binding Sun protein [Listeria ivanovii subsp. ivanovii
PAM 55]
gi|346982289|emb|CBW86283.1| Putative RNA-binding Sun protein [Listeria ivanovii subsp. ivanovii
PAM 55]
Length = 446
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/247 (36%), Positives = 131/247 (53%), Gaps = 43/247 (17%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+LA + L ++ VLD CAAPG K THIA M+ TG + ALD + + +++
Sbjct: 234 IQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQ 293
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
K+LQL +I+T D+ +T + E+FDRIL+DAPCSGFG ++P
Sbjct: 294 AAKRLQLLNIRTAHLDARTASTM---------FEPETFDRILVDAPCSGFGVLRRKPDIK 344
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
A + +K I A IQ +L V + V K++GILVY TC++ EENE
Sbjct: 345 YAKT----EKDIHKLAEIQLAILDDVSQLV-----------KENGILVYSTCTIDKEENE 389
Query: 246 AVIAWILHRHPEVELVQ-TLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
V+ L +HPE L LP+ LAH ++ +D L+PTD +D GF
Sbjct: 390 TVLRAFLEKHPEFTLEPVALPE----KLAH--IKKDDFV-------QLLPTDIGSD--GF 434
Query: 305 FICKLRK 311
F+ LRK
Sbjct: 435 FVSSLRK 441
>gi|281203041|gb|EFA77242.1| NOL1/NOP2/Sun family protein [Polysphondylium pallidum PN500]
Length = 403
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 136/293 (46%), Gaps = 51/293 (17%)
Query: 44 RGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQKVL 90
RGV +E SQV DS + I P LAGHY L+ QPG++VL
Sbjct: 58 RGVHLEPIK-WSQVGLTIYDSQVAIGAT-PEYLAGHYIQQSASSFLPVLALEPQPGERVL 115
Query: 91 DMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINT 150
DMCA+PG K T+IA LM +TG L+A D +K R+ L I +L R
Sbjct: 116 DMCASPGGKTTYIASLMKNTGVLVANDINKERMRSLVANIHRL-----------GVRNTV 164
Query: 151 SSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQA 210
S +D + FDR+L+DAPC G G ++ + +IQK+L+
Sbjct: 165 VSNLDGREYPSRMGGFDRVLVDAPCVGLGVIAKDQQI-KMTKSERDVTKCTHIQKELILH 223
Query: 211 VYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMK 270
V G GI+VY TCSL+VEENEAV+ + L + V+LV T + G++
Sbjct: 224 AIDSVDANSKTG-------GIIVYSTCSLTVEENEAVVDYALKKR-HVQLVDTSIEFGVQ 275
Query: 271 GLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRKKYGEAP 317
G + QRF P LI T R N D GF++ K +K E P
Sbjct: 276 GFTNYR--------EQRFNPNLILTKRFYPHTHNMD--GFYVAKFKKLSNEIP 318
>gi|390465106|ref|XP_003733344.1| PREDICTED: putative methyltransferase NSUN6 isoform 2 [Callithrix
jacchus]
Length = 379
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 93/157 (59%), Gaps = 7/157 (4%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
LQNLPS + H L+ QPG+K+LD+CAAPG K THIA LM+D G +IALDK +V K++
Sbjct: 217 FLQNLPSAVVTHVLNPQPGEKILDLCAAPGGKTTHIAALMHDQGEVIALDKIFNKVEKIQ 276
Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDIERM-KLQKESFDRILLDAPCSGFGQRPMFYN 186
+ L L+SI+ +D T+ +D E E+FDRILLDAPCSG GQRP
Sbjct: 277 QNASLLGLNSIRAFCFDGTKAVKLDMVDTEEEPPFLPETFDRILLDAPCSGMGQRPNMAC 336
Query: 187 ANSFLNLDKKIKSYANIQKKLLQAVYRFV--SLFDWQ 221
S K++ SY +Q+KL + + DW+
Sbjct: 337 TWSL----KEVTSYQPLQRKLFTVAVQLLKPGTTDWR 369
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 319 IYIHPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFAPGVLA 371
I HP L D ++I P++ +++ + IV C AVLRGA V+APG+++
Sbjct: 86 ILEHPDLQDVLLI-PVIGPRKNIKKQQCEAIVGAQCGNAVLRGAHVYAPGIVS 137
>gi|284802268|ref|YP_003414133.1| hypothetical protein LM5578_2024 [Listeria monocytogenes 08-5578]
gi|284995410|ref|YP_003417178.1| hypothetical protein LM5923_1975 [Listeria monocytogenes 08-5923]
gi|386054077|ref|YP_005971635.1| ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes Finland 1998]
gi|404413901|ref|YP_006699488.1| tRNA and rRNA cytosine-C5-methylase [Listeria monocytogenes
SLCC7179]
gi|284057830|gb|ADB68771.1| hypothetical protein LM5578_2024 [Listeria monocytogenes 08-5578]
gi|284060877|gb|ADB71816.1| hypothetical protein LM5923_1975 [Listeria monocytogenes 08-5923]
gi|346646728|gb|AEO39353.1| ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes Finland 1998]
gi|404239600|emb|CBY61001.1| putative tRNA and rRNA cytosine-C5-methylase [Listeria
monocytogenes SLCC7179]
Length = 444
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 89/246 (36%), Positives = 128/246 (52%), Gaps = 41/246 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+LA + L ++ VLD CAAPG K THIA M+ TG + ALD + + ++E
Sbjct: 234 IQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDE 293
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
K+LQL +I+T D+ +T + E+FDRIL+DAPCSGFG ++P
Sbjct: 294 AAKRLQLLNIRTAHLDARTASTM---------FEPETFDRILVDAPCSGFGVLRRKPDIK 344
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
A + +K I A IQ +L V + V K++GILVY TC++ EENE
Sbjct: 345 YAKT----EKDIHKLAEIQLAILDDVSQLV-----------KENGILVYSTCTIDKEENE 389
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
V+ L +HPE L + L K + + +Q L+PTD +D GFF
Sbjct: 390 TVLRAFLEKHPEFTLEPVV-------LPEKLAQIKKDDFIQ-----LLPTDIGSD--GFF 435
Query: 306 ICKLRK 311
+ LRK
Sbjct: 436 VSSLRK 441
>gi|282901368|ref|ZP_06309293.1| Fmu, rRNA SAM-dependent methyltransferase [Cylindrospermopsis
raciborskii CS-505]
gi|281193647|gb|EFA68619.1| Fmu, rRNA SAM-dependent methyltransferase [Cylindrospermopsis
raciborskii CS-505]
Length = 446
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 122/244 (50%), Gaps = 39/244 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ + L GH LD +PG+ ++D+CAAPG K THIA LM D G + A D++ R+ KL E
Sbjct: 240 IQDAAAQLVGHLLDPRPGEVIIDVCAAPGGKTTHIAELMGDNGKIYACDRTPSRLRKLSE 299
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
++L+L SI+ DS + DR+LLDAPCSG G +A
Sbjct: 300 NAQRLRLQSIEIFPGDSRNFTKFHHLA-----------DRVLLDAPCSGLGTMHRHADAR 348
Query: 189 SFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVI 248
NL + A+IQ++L+ FV K G+LVY TC+L +ENE +I
Sbjct: 349 WRQNL-SSVGDLAHIQRELISHTANFV-----------KPGGVLVYATCTLHPQENEELI 396
Query: 249 AWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICK 308
LH +P+ E+ + P L L+ ++ L P +N D GFF+ +
Sbjct: 397 REFLHVNPQWEMEK--PNLDF-------LDVSSPGWLK-----LWPHQQNMD--GFFLVR 440
Query: 309 LRKK 312
LRK
Sbjct: 441 LRKN 444
>gi|399217017|emb|CCF73704.1| unnamed protein product [Babesia microti strain RI]
Length = 412
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 110/317 (34%), Positives = 150/317 (47%), Gaps = 61/317 (19%)
Query: 26 ARQRPSLSIYCYALDILFRGVAVEITNVLSQVPNVALDSSMGILQN--------LPSILA 77
A+ RP L+I L R +A + + + V + S +G++ N P LA
Sbjct: 95 AKSRP-LTIRTNTLKTKRRDLAQMLISRGANVDPIGDWSKIGLVVNDHTIPIGATPEYLA 153
Query: 78 GHY-------------LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVT 124
GHY LD P +K+LDM AAPG K THI LMN+TG L A D +K R T
Sbjct: 154 GHYIQQSAASLIPVMALDPMPDEKILDMSAAPGGKCTHIGQLMNNTGILYANDVNKDRCT 213
Query: 125 KLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMF 184
L I ++ L++ YD E +K+ + DR+LLDAPCSG G +
Sbjct: 214 SLVANIHRMGLTNTIVINYDGR----------ELVKVLPK-MDRVLLDAPCSGLGAKRTV 262
Query: 185 YNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
K I +++QK+LL V L D Q K GI+VY TCSLS EEN
Sbjct: 263 ----------KDIVQMSHLQKQLLCTA---VDLCDAQS----KNGGIIVYSTCSLSAEEN 305
Query: 245 EAVIAWILHRHPEVELVQTLP-QLGMKGLA---HKDLEAEDQAVMQRFGPPLIPTDRNTD 300
E VI +IL ++ VEL L ++G+ G + K + + +RF P L D
Sbjct: 306 EMVIDYIL-KNRSVELCPLLSHEIGVPGFSVFMDKIMHTSIEKYTRRFYPHLHDLD---- 360
Query: 301 TIGFFICKLRKKYGEAP 317
GFF+ KL+K E P
Sbjct: 361 --GFFVAKLKKTSNEIP 375
>gi|289435165|ref|YP_003465037.1| sun protein [Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|289171409|emb|CBH27953.1| sun protein [Listeria seeligeri serovar 1/2b str. SLCC3954]
Length = 446
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 92/247 (37%), Positives = 129/247 (52%), Gaps = 43/247 (17%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+LA + L ++ VLD CAAPG K THIA M+ TG + ALD + + ++
Sbjct: 234 IQDESSMLATYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDH 293
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
K+LQL +I+T D+ NT E+FDRIL+DAPCSGFG ++P
Sbjct: 294 AAKRLQLLNIRTAHLDARTANTM---------FAPETFDRILVDAPCSGFGVLRRKPDIK 344
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
A + +K I A IQ +L V + V K++GILVY TC++ EENE
Sbjct: 345 YAKT----EKDIHKLAEIQLAILDDVSQLV-----------KENGILVYSTCTIDKEENE 389
Query: 246 AVIAWILHRHPEVELVQ-TLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
V+ L +HPE L LP+ LAH ++ +D L+PTD +D GF
Sbjct: 390 TVLRAFLEKHPEFALEPVALPE----KLAH--IKKDDFV-------QLLPTDIGSD--GF 434
Query: 305 FICKLRK 311
F+ LRK
Sbjct: 435 FVSSLRK 441
>gi|373857268|ref|ZP_09600010.1| sun protein [Bacillus sp. 1NLA3E]
gi|372452918|gb|EHP26387.1| sun protein [Bacillus sp. 1NLA3E]
Length = 449
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 86/259 (33%), Positives = 128/259 (49%), Gaps = 46/259 (17%)
Query: 61 ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSK 120
A + +Q+ S+L + L + +VLD CAAPG K THIA ++ TG +++LD +
Sbjct: 229 AFKDGLFTIQDESSMLVAYALGISLNDRVLDACAAPGGKSTHIAERLDHTGAVVSLDLHE 288
Query: 121 PRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG- 179
+V + E+ K+L L++I+T DS ++ ESFD+ILLDAPCSG G
Sbjct: 289 HKVKLISESAKRLGLNNIETKALDSRKVQEY---------FAPESFDKILLDAPCSGLGV 339
Query: 180 --QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC 237
++P +L+K IQ L +V PLLKK GILVY TC
Sbjct: 340 MRRKPDMKYTKKVEDLNK----LQVIQTDLFSSV-----------APLLKKGGILVYSTC 384
Query: 238 SLSVEENEAVIAWILHRHPE----VELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLI 293
++ EEN V+ L +HPE +V+ +P A +++ F ++
Sbjct: 385 TIDKEENSTVVENFLQKHPEFYGDTTMVERMP-------------APVGSLINDFSLQIL 431
Query: 294 PTDRNTDTIGFFICKLRKK 312
P D +D GF+I LRKK
Sbjct: 432 PQDFGSD--GFYIACLRKK 448
>gi|337285025|ref|YP_004624499.1| nol1-nop2-sun family nucleolar protein III [Pyrococcus yayanosii
CH1]
gi|334900959|gb|AEH25227.1| nol1-nop2-sun family nucleolar protein III [Pyrococcus yayanosii
CH1]
Length = 384
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 137/272 (50%), Gaps = 46/272 (16%)
Query: 44 RGVAVEITNVLSQVPNVA----LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNK 99
RG+AVE+T ++P+++ + Q+LPS++ L+ ++DM AAPG K
Sbjct: 152 RGLAVEVTLPKFKLPSLSELESFEKGYFYPQSLPSMITARILEPSEEDLIIDMAAAPGGK 211
Query: 100 LTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERM 159
+HIA L+ + G +IA+DKS+ R+ K+++ +K+L + +++ +D +
Sbjct: 212 TSHIAQLLQNRGEIIAIDKSENRLKKMKDNLKRLGVKNVRL-----------IHMDARNL 260
Query: 160 KLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFD 219
E D+ILLDAPC+ G RP + + K ++A R+ F
Sbjct: 261 PELGEKADKILLDAPCTALGVRPKLWETRT---------------PKDIEATARYQRAFI 305
Query: 220 WQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEA 279
W I L+K G+LVY TC+LS EENE + ++L + ++E +G G+ +
Sbjct: 306 WAAIKSLRKGGVLVYSTCTLSYEENEGNVKFMLKKGLKLEEQSIF--IGAPGIGLDKV-- 361
Query: 280 EDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
QRF P +R+ T GFFI KLRK
Sbjct: 362 ------QRFYP-----NRHR-TQGFFIAKLRK 381
>gi|315303726|ref|ZP_07874237.1| ribosomal RNA small subunit methyltransferase B [Listeria ivanovii
FSL F6-596]
gi|313627903|gb|EFR96525.1| ribosomal RNA small subunit methyltransferase B [Listeria ivanovii
FSL F6-596]
Length = 446
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 90/246 (36%), Positives = 129/246 (52%), Gaps = 41/246 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+LA + L ++ VLD CAAPG K THIA M+ TG + ALD + + +++
Sbjct: 234 IQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQ 293
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
K+LQL +I+T D+ +T + E+FDRIL+DAPCSGFG ++P
Sbjct: 294 AAKRLQLLNIRTAHLDARTASTM---------FEPETFDRILVDAPCSGFGVLRRKPDIK 344
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
A + +K I A IQ +L V + V K++GILVY TC++ EENE
Sbjct: 345 YAKT----EKDIHKLAEIQLAILDDVSQLV-----------KENGILVYSTCTIDKEENE 389
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
V+ L +HPE L P LAH ++ +D L+PTD +D GFF
Sbjct: 390 TVLRAFLEKHPEFRLE---PVALPAKLAH--IKKDDFV-------QLLPTDIGSD--GFF 435
Query: 306 ICKLRK 311
+ LRK
Sbjct: 436 VSSLRK 441
>gi|398310669|ref|ZP_10514143.1| 16S rRNA methyltransferase B [Bacillus mojavensis RO-H-1]
Length = 447
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 123/247 (49%), Gaps = 38/247 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L LD +PG+ VLD CAAPG K HIA LM + G++ +LD K +V ++E
Sbjct: 235 IQDESSMLVARALDPKPGETVLDACAAPGGKSAHIAELMENKGSVTSLDLHKHKVKLIKE 294
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
++L LS I D+ + + + E FDRIL+DAPCSGFG ++P
Sbjct: 295 ASERLGLSIIDAKTMDARKAGET---------FESEQFDRILVDAPCSGFGVIRRKPDM- 344
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ A IQ +L+ + PL+KK G LVY TC++ ENE
Sbjct: 345 ---KYTKTPNDSSRLAEIQLSILREI-----------APLVKKGGTLVYSTCTMDRTENE 390
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
VI + HP+ E P L ++ K L + + ++ ++P TD GFF
Sbjct: 391 EVIHAFIQEHPDFE-----PDLSLE----KRLPEKARPFVRDGRLQILPHYFGTD--GFF 439
Query: 306 ICKLRKK 312
IC +RKK
Sbjct: 440 ICSMRKK 446
>gi|194014930|ref|ZP_03053547.1| ribosomal RNA small subunit methyltransferase B [Bacillus pumilus
ATCC 7061]
gi|194013956|gb|EDW23521.1| ribosomal RNA small subunit methyltransferase B [Bacillus pumilus
ATCC 7061]
Length = 442
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 86/248 (34%), Positives = 125/248 (50%), Gaps = 40/248 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L LD QPG+ VLD CAAPG K THIA MND G +++LD + +V +++
Sbjct: 230 IQDESSMLVARALDPQPGEAVLDACAAPGGKSTHIAERMNDKGQIVSLDLHEHKVKLIKQ 289
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP-MF 184
K+L L+ I+ D+ + + SFDRIL+DAPCSGFG ++P M
Sbjct: 290 AAKRLNLTQIEAKALDARKAKGD---------YSEASFDRILIDAPCSGFGVIRRKPDMK 340
Query: 185 YNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
Y + + A IQ+ +L+ + PLLK G LVY TC++ EN
Sbjct: 341 YTKSK-----EDSARLAAIQQAILK-----------ETAPLLKPGGTLVYSTCTMDPTEN 384
Query: 245 EAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
+ VI L H + E P L + ++ L + +Q ++P TD GF
Sbjct: 385 QQVIHAFLQEHQDFE-----PDLSL----NERLPEQVAPFVQNGSVQILPHYFGTD--GF 433
Query: 305 FICKLRKK 312
FIC +RKK
Sbjct: 434 FICSMRKK 441
>gi|81299771|ref|YP_399979.1| sun protein [Synechococcus elongatus PCC 7942]
gi|81168652|gb|ABB56992.1| sun protein [Synechococcus elongatus PCC 7942]
Length = 451
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 77/208 (37%), Positives = 105/208 (50%), Gaps = 27/208 (12%)
Query: 54 LSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTL 113
+ Q+P D ++Q+ + L H +D QPG+ VLD+CAAPG K TH+A LM D G +
Sbjct: 229 IRQLPG--FDEGWWMVQDSSAQLIAHLVDPQPGETVLDVCAAPGGKSTHLAELMGDRGQV 286
Query: 114 IALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDA 173
IA D S R+ K++E ++LQLSSI T D +I DRIL+DA
Sbjct: 287 IACDSSAKRLRKVQENAQRLQLSSITTRAIDGRQIKGI-------------QADRILVDA 333
Query: 174 PCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILV 233
PCSG G + + D + A +Q ++L A LK G LV
Sbjct: 334 PCSGLGTLHRHADGRWRQSPD-SVAELAQLQSEILDAA-----------AACLKPAGTLV 381
Query: 234 YCTCSLSVEENEAVIAWILHRHPEVELV 261
Y TC+L ENEAVI L RHP+ ++
Sbjct: 382 YATCTLHPAENEAVIEQFLQRHPDWQMA 409
>gi|299535921|ref|ZP_07049241.1| ribosomal RNA small subunit methyltransferase B [Lysinibacillus
fusiformis ZC1]
gi|424738860|ref|ZP_18167289.1| ribosomal RNA small subunit methyltransferase B [Lysinibacillus
fusiformis ZB2]
gi|298728673|gb|EFI69228.1| ribosomal RNA small subunit methyltransferase B [Lysinibacillus
fusiformis ZC1]
gi|422947344|gb|EKU41741.1| ribosomal RNA small subunit methyltransferase B [Lysinibacillus
fusiformis ZB2]
Length = 453
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 130/259 (50%), Gaps = 41/259 (15%)
Query: 61 ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSK 120
A M +Q+ S++ + L+ PG +VLDMCAAPG K THIA +M + G+++A D
Sbjct: 232 AFKEGMITIQDESSMIPANVLNPSPGMRVLDMCAAPGGKTTHIAEIMQNEGSILATDLHP 291
Query: 121 PRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG- 179
++ ++ ++L L ++T D + LQ SFD IL+DAPCSG G
Sbjct: 292 HKLDLIDHNTERLGLDIVETAPIDGRKAPEF---------LQAASFDAILVDAPCSGLGV 342
Query: 180 --QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC 237
++P + ++ ++S IQ LL A + +LK DG LVY TC
Sbjct: 343 MRRKPDI----KYTKREEDLESLQKIQLALLDAATK-----------VLKTDGKLVYSTC 387
Query: 238 SLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR 297
++ ++ENE + L HPE+E +Q ++ L K E + ++Q F P D
Sbjct: 388 TVDIQENEGTVKAFLTAHPEMEAIQ------LESLPTKLAEKQANGMLQVF-----PQDF 436
Query: 298 NTDTIGFFICKLRKKYGEA 316
+D GFF+ RKK GE+
Sbjct: 437 GSD--GFFVAAFRKK-GES 452
>gi|288553113|ref|YP_003425048.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus pseudofirmus
OF4]
gi|288544273|gb|ADC48156.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus pseudofirmus
OF4]
Length = 448
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 86/250 (34%), Positives = 123/250 (49%), Gaps = 44/250 (17%)
Query: 70 QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEET 129
Q+ S+L G L G++V D+CAAPG K THIA MN+ G+++A D +V +
Sbjct: 236 QDESSMLVGRALGANSGERVADVCAAPGGKTTHIAEQMNNEGSVLAFDLHDHKVKLIRGQ 295
Query: 130 IKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYN 186
+L LS I T D+ ++ K + ESFDRIL+DAPCSGFG ++P
Sbjct: 296 AARLDLSIIDTQAADARKLAE---------KFEPESFDRILVDAPCSGFGVIKRKPDIKW 346
Query: 187 ANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEA 246
A + IK+ +IQ+ +L AV PLLKK G LVY TC++ +ENE
Sbjct: 347 AKK----EADIKAIQSIQQAILNAVA-----------PLLKKGGTLVYSTCTVDKDENEE 391
Query: 247 VIAWILHRHP----EVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTI 302
+ L HP + +L LP+ + D + ++P D N+D
Sbjct: 392 TVEAFLAEHPSFVKDEDLKNRLPK-----------QVIDSKRFKSGMVTILPQDFNSD-- 438
Query: 303 GFFICKLRKK 312
GFFI L K+
Sbjct: 439 GFFISSLVKQ 448
>gi|340355046|ref|ZP_08677739.1| RNA methyltransferase Sun [Sporosarcina newyorkensis 2681]
gi|339622727|gb|EGQ27241.1| RNA methyltransferase Sun [Sporosarcina newyorkensis 2681]
Length = 446
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 89/270 (32%), Positives = 134/270 (49%), Gaps = 47/270 (17%)
Query: 46 VAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIAL 105
+ VE N+ S A + +Q+ S+L L V+PG KVLDMCAAPG K THIA
Sbjct: 220 IQVESGNLAS---TEAFQQGLLTVQDESSMLPALALQVEPGMKVLDMCAAPGGKTTHIAE 276
Query: 106 LMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKES 165
M D G + A D ++ +E+ ++L L+SI T+ DS + ++ + +S
Sbjct: 277 RMKDEGEVQAHDLHPHKLRLIEQNAERLGLTSIHTNSGDSRELLST---------YEPQS 327
Query: 166 FDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQG 222
FDR+L+DAPCSG G ++P + + I++ + IQK LLQ + V
Sbjct: 328 FDRVLVDAPCSGLGVIRRKPEIKYKKTV----QDIENLSVIQKDLLQVAAQLV------- 376
Query: 223 IPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQ 282
KK G LVY TC++ EN+A++ W L P+ ELV H + D
Sbjct: 377 ----KKGGRLVYSTCTIDKTENQAIVEWFLREQPDFELVPL----------HITDQPTDS 422
Query: 283 AVMQRFGPPLIPTDRNTDTIGFFICKLRKK 312
+ +Q ++P +D GFF+ L+KK
Sbjct: 423 SYLQ-----ILPHQYESD--GFFVAALQKK 445
>gi|440683854|ref|YP_007158649.1| sun protein [Anabaena cylindrica PCC 7122]
gi|428680973|gb|AFZ59739.1| sun protein [Anabaena cylindrica PCC 7122]
Length = 455
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 101/329 (30%), Positives = 145/329 (44%), Gaps = 71/329 (21%)
Query: 11 LWLDRAGFVSVLRLPA--RQRPSLSIYCYAL-------DILFRGVAVEITNVLSQVPNVA 61
+WL + GF +L A Q P++ + L + F+ V + + +
Sbjct: 165 VWLAQLGFAETEKLCAWMNQTPTIDLRVNILRSSLKEVESAFQSAGVLVKRIPRLPQALR 224
Query: 62 LDSSMGILQNLPSI-------------LAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMN 108
L S G +QNLP L GH LD +PG+ V+D CAAPG K THIA LM
Sbjct: 225 LIGSNGPIQNLPGFREGWWTIQDSSAQLVGHLLDPKPGEVVIDACAAPGGKTTHIAELMG 284
Query: 109 DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDR 168
D G + A DK+ R+ KL++ ++L L SI+ + DS + DR
Sbjct: 285 DHGKIWACDKTASRLRKLQDNARRLNLQSIEIYTGDSCNLPQFYN-----------QADR 333
Query: 169 ILLDAPCSGFGQRPMFYNANS-FLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLK 227
+LLDAPCSG G M +A++ + + I+ + +Q KLL FV K
Sbjct: 334 VLLDAPCSGLGT--MHRHADARWRQTPESIQQLSLLQTKLLSHTSNFV-----------K 380
Query: 228 KDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQR 287
+G+LVY TC+L ENE VI+ L HP H +E Q +
Sbjct: 381 DNGVLVYATCTLHPAENEEVISRFLADHP-----------------HWQVEPPRQNLTAT 423
Query: 288 FGPP-----LIPTDRNTDTIGFFICKLRK 311
P + P + D GFF+ +LRK
Sbjct: 424 SSTPPGWLKIWPHQEDMD--GFFMVRLRK 450
>gi|417315470|ref|ZP_12102146.1| 16S rRNA methyltransferase B [Listeria monocytogenes J1816]
gi|328466174|gb|EGF37331.1| 16S rRNA methyltransferase B [Listeria monocytogenes J1816]
Length = 399
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 88/246 (35%), Positives = 129/246 (52%), Gaps = 41/246 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+LA + L ++ VLD CAAPG K THIA M+ TG + ALD + + +++
Sbjct: 189 IQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQ 248
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
K+LQL +I+T D+ +T + E+FDRIL+DAPCSGFG ++P
Sbjct: 249 AAKRLQLLNIRTAHLDARTASTM---------FEPETFDRILVDAPCSGFGVLRRKPDIK 299
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
A + +K I A IQ +L V + L+K++GILVY TC++ EENE
Sbjct: 300 YAKT----EKDIHKLAEIQLAILDDVSQ-----------LVKENGILVYSTCTIDKEENE 344
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
V+ L +HPE L + L K + + +Q L+PTD +D GFF
Sbjct: 345 TVLRAFLEKHPEFTLEPVV-------LPEKLAQIKKDDFIQ-----LLPTDIGSD--GFF 390
Query: 306 ICKLRK 311
+ LRK
Sbjct: 391 VSSLRK 396
>gi|119487592|ref|ZP_01621202.1| Fmu, rRNA SAM-dependent methyltransferase [Lyngbya sp. PCC 8106]
gi|119455761|gb|EAW36897.1| Fmu, rRNA SAM-dependent methyltransferase [Lyngbya sp. PCC 8106]
Length = 450
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 100/324 (30%), Positives = 154/324 (47%), Gaps = 64/324 (19%)
Query: 12 WLDRAGFVSVLRLPA--RQRPSLSIYCYALDILFRGVAVEIT----NVLSQVPNVA---- 61
WL++ G +L Q P++ + AL V E+ NV + +P+++
Sbjct: 165 WLNQLGLEETEKLCQWFNQSPTIDLRINALKTSRDTVETELKLAGINV-TPIPHLSQALR 223
Query: 62 LDSSMGILQNLPSILAG-------------HYLDVQPGQKVLDMCAAPGNKLTHIALLMN 108
L S+G +QNLP G H LD QPG+ ++D CAAPG K THIA LM
Sbjct: 224 LSGSIGEIQNLPGYRQGWWSIQDSSAQWVSHILDPQPGEIIIDACAAPGGKTTHIAELMQ 283
Query: 109 DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDR 168
DTGT++A D++K R+ K+++ ++LQL SI T + DI + DR
Sbjct: 284 DTGTILAFDRAKSRLKKVQQNQERLQLKSITTQL-----------ADIRELSEYNSCADR 332
Query: 169 ILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKK 228
+LLDAPCSG G +A + + + ++ + +Q +LL+ +V K
Sbjct: 333 VLLDAPCSGLGTLHRRADAR-WRHTQQNVQELSELQTELLEKTATWV-----------KP 380
Query: 229 DGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRF 288
G LVY TC++ ENE +I L + E+ LP++ + Q V+
Sbjct: 381 GGYLVYATCTIHPLENETIIQSFLSHNLNWEI--DLPEIPL------------QDVLTSE 426
Query: 289 GP-PLIPTDRNTDTIGFFICKLRK 311
G + P +N D GFFI KL++
Sbjct: 427 GYLKVWPHRQNMD--GFFIVKLKR 448
>gi|422809903|ref|ZP_16858314.1| Ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes FSL J1-208]
gi|378751567|gb|EHY62155.1| Ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes FSL J1-208]
Length = 444
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 88/246 (35%), Positives = 128/246 (52%), Gaps = 41/246 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+LA + L ++ VLD CAAPG K THIA M+ TG + ALD + + +++
Sbjct: 234 IQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQ 293
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
K+LQL +I+T D+ +T + E+FDRIL+DAPCSGFG ++P
Sbjct: 294 AAKRLQLLNIRTAHLDARTASTM---------FEPETFDRILVDAPCSGFGVLRRKPDIK 344
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
A + +K I A IQ +L V + V K++GILVY TC++ EENE
Sbjct: 345 YAKT----EKDIHKLAEIQLAILDDVSQLV-----------KENGILVYSTCTIDKEENE 389
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
V+ L +HPE L + L K + + +Q L+PTD +D GFF
Sbjct: 390 TVLRAFLEKHPEFALEPVV-------LPEKLAQIKKDDFIQ-----LLPTDIGSD--GFF 435
Query: 306 ICKLRK 311
+ LRK
Sbjct: 436 VSSLRK 441
>gi|422422526|ref|ZP_16499479.1| ribosomal RNA small subunit methyltransferase B [Listeria seeligeri
FSL S4-171]
gi|313637331|gb|EFS02816.1| ribosomal RNA small subunit methyltransferase B [Listeria seeligeri
FSL S4-171]
Length = 446
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 91/247 (36%), Positives = 130/247 (52%), Gaps = 43/247 (17%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+LA + L ++ VLD CAAPG K THIA M+ TG + ALD + + ++
Sbjct: 234 IQDESSMLATYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDH 293
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
K+LQL +I+T D+ +T + E+FDRIL+DAPCSGFG ++P
Sbjct: 294 AAKRLQLLNIRTAHLDARTASTM---------FEPETFDRILVDAPCSGFGVLRRKPDIK 344
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
A + +K I A IQ +L V + V K++GILVY TC++ EENE
Sbjct: 345 YAKT----EKDIHKLAEIQLAILDDVSQLV-----------KENGILVYSTCTIDKEENE 389
Query: 246 AVIAWILHRHPEVELVQ-TLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
V+ L +HPE L LP+ LAH ++ +D L+PTD +D GF
Sbjct: 390 TVLRAFLEKHPEFALEPVALPE----KLAH--IKKDDFV-------QLLPTDIGSD--GF 434
Query: 305 FICKLRK 311
F+ LRK
Sbjct: 435 FVSSLRK 441
>gi|217964025|ref|YP_002349703.1| ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes HCC23]
gi|386008594|ref|YP_005926872.1| tRNA and rRNA cytosine-C5-methylase [Listeria monocytogenes L99]
gi|386027202|ref|YP_005947978.1| putative rRNA cytosine-C5-methylase (Sun protein) [Listeria
monocytogenes M7]
gi|217333295|gb|ACK39089.1| ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes HCC23]
gi|307571404|emb|CAR84583.1| tRNA and rRNA cytosine-C5-methylase, putative [Listeria
monocytogenes L99]
gi|336023783|gb|AEH92920.1| putative rRNA cytosine-C5-methylase (Sun protein) [Listeria
monocytogenes M7]
Length = 444
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 88/246 (35%), Positives = 128/246 (52%), Gaps = 41/246 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+LA + L ++ VLD CAAPG K THIA M+ TG + ALD + + +++
Sbjct: 234 IQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQ 293
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
K+LQL +I+T D+ +T + E+FDRIL+DAPCSGFG ++P
Sbjct: 294 AAKRLQLLNIRTAHLDARTASTM---------FEPETFDRILVDAPCSGFGVLRRKPDIK 344
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
A + +K I A IQ +L V + V K++GILVY TC++ EENE
Sbjct: 345 YAKT----EKDIHKLAEIQLAILDDVSQLV-----------KENGILVYSTCTIDKEENE 389
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
V+ L +HPE L + L K + + +Q L+PTD +D GFF
Sbjct: 390 TVLRAFLEKHPEFALEPVV-------LPEKLAQIKKDDFIQ-----LLPTDIGSD--GFF 435
Query: 306 ICKLRK 311
+ LRK
Sbjct: 436 VSSLRK 441
>gi|47096543|ref|ZP_00234133.1| sun protein [Listeria monocytogenes str. 1/2a F6854]
gi|254912380|ref|ZP_05262392.1| sun protein [Listeria monocytogenes J2818]
gi|254936707|ref|ZP_05268404.1| sun protein [Listeria monocytogenes F6900]
gi|386047475|ref|YP_005965807.1| ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes J0161]
gi|47015075|gb|EAL06018.1| sun protein [Listeria monocytogenes serotype 1/2a str. F6854]
gi|258609304|gb|EEW21912.1| sun protein [Listeria monocytogenes F6900]
gi|293590362|gb|EFF98696.1| sun protein [Listeria monocytogenes J2818]
gi|345534466|gb|AEO03907.1| ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes J0161]
gi|441471583|emb|CCQ21338.1| Ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes]
gi|441474715|emb|CCQ24469.1| Ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes N53-1]
Length = 444
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 88/246 (35%), Positives = 128/246 (52%), Gaps = 41/246 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+LA + L ++ VLD CAAPG K THIA M+ TG + ALD + + ++E
Sbjct: 234 IQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDE 293
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
K+LQL +I+T D+ +T + E+FDRIL+DAPCSGFG ++P
Sbjct: 294 AAKRLQLLNIRTAHLDARTASTM---------FEPETFDRILVDAPCSGFGVLRRKPDIK 344
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
A + +K I A IQ +L V + V K++GILVY TC++ EENE
Sbjct: 345 YAKT----EKDIHKLAEIQLTILDDVSQLV-----------KENGILVYSTCTIDKEENE 389
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
V+ L +HP+ L + L K + + +Q L+PTD +D GFF
Sbjct: 390 TVLRAFLEKHPDFTLEPVV-------LPEKLAQIKKDDFIQ-----LLPTDIGSD--GFF 435
Query: 306 ICKLRK 311
+ LRK
Sbjct: 436 VSSLRK 441
>gi|290893049|ref|ZP_06556038.1| sun protein [Listeria monocytogenes FSL J2-071]
gi|404408266|ref|YP_006690981.1| tRNA and rRNA cytosine-C5-methylase [Listeria monocytogenes
SLCC2376]
gi|422410069|ref|ZP_16487030.1| ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes FSL F2-208]
gi|290557409|gb|EFD90934.1| sun protein [Listeria monocytogenes FSL J2-071]
gi|313608142|gb|EFR84195.1| ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes FSL F2-208]
gi|404242415|emb|CBY63815.1| putative tRNA and rRNA cytosine-C5-methylase [Listeria
monocytogenes SLCC2376]
Length = 444
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 88/246 (35%), Positives = 128/246 (52%), Gaps = 41/246 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+LA + L ++ VLD CAAPG K THIA M+ TG + ALD + + +++
Sbjct: 234 IQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQ 293
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
K+LQL +I+T D+ +T + E+FDRIL+DAPCSGFG ++P
Sbjct: 294 AAKRLQLLNIRTAHLDARTASTM---------FEPETFDRILVDAPCSGFGVLRRKPDIK 344
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
A + +K I A IQ +L V + V K++GILVY TC++ EENE
Sbjct: 345 YAKT----EKDIHKLAEIQLAILDDVSQLV-----------KENGILVYSTCTIDKEENE 389
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
V+ L +HPE L + L K + + +Q L+PTD +D GFF
Sbjct: 390 TVLRAFLEKHPEFALEPVV-------LPEKLAQIKKDDFIQ-----LLPTDIGSD--GFF 435
Query: 306 ICKLRK 311
+ LRK
Sbjct: 436 VSSLRK 441
>gi|393201779|ref|YP_006463621.1| tRNA and rRNA cytosine-C5-methylase [Solibacillus silvestris
StLB046]
gi|406664656|ref|ZP_11072431.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
isronensis B3W22]
gi|327441110|dbj|BAK17475.1| tRNA and rRNA cytosine-C5-methylase [Solibacillus silvestris
StLB046]
gi|405387504|gb|EKB46928.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
isronensis B3W22]
Length = 453
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 86/257 (33%), Positives = 127/257 (49%), Gaps = 44/257 (17%)
Query: 61 ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSK 120
A + + +Q+ S+L L+ QPG KVLDMCAAPG K TH+A +M + G+++A D
Sbjct: 232 AFRNGLITIQDESSMLPAKVLNPQPGMKVLDMCAAPGGKTTHLAEVMKNEGSILATDLHP 291
Query: 121 PRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG- 179
++ +EE + +L L+ I+T D + LQKE +D IL+DAPCSG G
Sbjct: 292 KKLDLIEENVARLGLNIIETAPLDGRKAAGF---------LQKEGYDAILVDAPCSGLGV 342
Query: 180 --QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC 237
++P + ++ ++S IQ +L + LLK+DG LVY TC
Sbjct: 343 MRRKPDI----KYTKREEDLESLQTIQLSILN-----------NAVQLLKQDGRLVYSTC 387
Query: 238 SLSVEENEAVIAWILHRHPEVELV--QTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPT 295
++ ENE + L HPE+ LV + LP LEA+ Q M + P I +
Sbjct: 388 TVDRSENEGTVQAFLKEHPEMNLVPIENLP---------TQLEAKQQDGMLQVFPQDIGS 438
Query: 296 DRNTDTIGFFICKLRKK 312
D GFF+ KK
Sbjct: 439 D------GFFVAAFVKK 449
>gi|16803862|ref|NP_465347.1| hypothetical protein lmo1822 [Listeria monocytogenes EGD-e]
gi|254829183|ref|ZP_05233870.1| sun protein [Listeria monocytogenes FSL N3-165]
gi|386044131|ref|YP_005962936.1| ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes 10403S]
gi|386050799|ref|YP_005968790.1| sun protein [Listeria monocytogenes FSL R2-561]
gi|404284318|ref|YP_006685215.1| tRNA and rRNA cytosine-C5-methylase [Listeria monocytogenes
SLCC2372]
gi|404411123|ref|YP_006696711.1| tRNA and rRNA cytosine-C5-methylase [Listeria monocytogenes
SLCC5850]
gi|405758873|ref|YP_006688149.1| tRNA and rRNA cytosine-C5-methylase [Listeria monocytogenes
SLCC2479]
gi|16411276|emb|CAC99900.1| lmo1822 [Listeria monocytogenes EGD-e]
gi|258601593|gb|EEW14918.1| sun protein [Listeria monocytogenes FSL N3-165]
gi|345537365|gb|AEO06805.1| ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes 10403S]
gi|346424645|gb|AEO26170.1| sun protein [Listeria monocytogenes FSL R2-561]
gi|404230949|emb|CBY52353.1| putative tRNA and rRNA cytosine-C5-methylase [Listeria
monocytogenes SLCC5850]
gi|404233820|emb|CBY55223.1| putative tRNA and rRNA cytosine-C5-methylase [Listeria
monocytogenes SLCC2372]
gi|404236755|emb|CBY58157.1| putative tRNA and rRNA cytosine-C5-methylase [Listeria
monocytogenes SLCC2479]
Length = 444
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 88/246 (35%), Positives = 128/246 (52%), Gaps = 41/246 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+LA + L ++ VLD CAAPG K THIA M+ TG + ALD + + ++E
Sbjct: 234 IQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDE 293
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
K+LQL +I+T D+ +T + E+FDRIL+DAPCSGFG ++P
Sbjct: 294 AAKRLQLLNIRTAHLDARTASTM---------FEPETFDRILVDAPCSGFGVLRRKPDIK 344
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
A + +K I A IQ +L V + V K++GILVY TC++ EENE
Sbjct: 345 YAKT----EKDIHKLAEIQLAILDDVSQLV-----------KENGILVYSTCTIDKEENE 389
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
V+ L +HP+ L + L K + + +Q L+PTD +D GFF
Sbjct: 390 TVLRAFLEKHPDFTLEPVV-------LPEKLAQIKKDDFIQ-----LLPTDIGSD--GFF 435
Query: 306 ICKLRK 311
+ LRK
Sbjct: 436 VSSLRK 441
>gi|226224425|ref|YP_002758532.1| RNA-binding Sun protein [Listeria monocytogenes serotype 4b str.
CLIP 80459]
gi|386732562|ref|YP_006206058.1| 16S rRNA methyltransferase B [Listeria monocytogenes 07PF0776]
gi|406704606|ref|YP_006754960.1| tRNA and rRNA cytosine-C5-methylase, putative [Listeria
monocytogenes L312]
gi|225876887|emb|CAS05596.1| Putative RNA-binding Sun protein [Listeria monocytogenes serotype
4b str. CLIP 80459]
gi|384391320|gb|AFH80390.1| 16S rRNA methyltransferase B [Listeria monocytogenes 07PF0776]
gi|406361636|emb|CBY67909.1| tRNA and rRNA cytosine-C5-methylase, putative [Listeria
monocytogenes L312]
Length = 444
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 88/246 (35%), Positives = 128/246 (52%), Gaps = 41/246 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+LA + L ++ VLD CAAPG K THIA M+ TG + ALD + + +++
Sbjct: 234 IQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQ 293
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
K+LQL +I+T D+ +T + E+FDRIL+DAPCSGFG ++P
Sbjct: 294 AAKRLQLLNIRTAHLDARTASTM---------FEPETFDRILVDAPCSGFGVLRRKPDIK 344
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
A + +K I A IQ +L V + V K++GILVY TC++ EENE
Sbjct: 345 YAKT----EKDIHKLAEIQLAILDDVSQLV-----------KENGILVYSTCTIDKEENE 389
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
V+ L +HPE L + L K + + +Q L+PTD +D GFF
Sbjct: 390 TVLRAFLEKHPEFTLEPVV-------LPEKLAQIKKDDFIQ-----LLPTDIGSD--GFF 435
Query: 306 ICKLRK 311
+ LRK
Sbjct: 436 VSSLRK 441
>gi|123968018|ref|YP_001008876.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. AS9601]
gi|123198128|gb|ABM69769.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. AS9601]
Length = 438
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 88/243 (36%), Positives = 131/243 (53%), Gaps = 39/243 (16%)
Query: 46 VAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQKVLDM 92
+ EI N L+ + L S+ ++NLP G + L+ + G+K+LD
Sbjct: 206 IDAEIINDLNN--GITLKSNPRSIKNLPGYSDGLWTIQDRSSQWIAPLLNPKEGEKILDA 263
Query: 93 CAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS 152
CAAPG+K TH+A L ND+ +IA+D+S R+ L+ +++L L S+ T D+TR+
Sbjct: 264 CAAPGSKSTHLAELTNDSAEIIAVDRSAKRLKILQSNLERLNLKSVNTLKADATRL---- 319
Query: 153 QIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDK-KIKSYANIQKKLLQAV 211
IE FD+ILLDAPCSG G + N +S +L K KIKS +Q KLL+++
Sbjct: 320 ---IELNPKFISYFDKILLDAPCSGIGT--LSRNPDSRWSLSKEKIKSLTLLQGKLLESI 374
Query: 212 YRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV---QTLPQLG 268
+PLLKKDG LVY TC++ +EN +I + ++ ++LV Q LP L
Sbjct: 375 -----------LPLLKKDGTLVYSTCTICPDENNLLIERFIEKNKTLKLVSQKQILPSLD 423
Query: 269 MKG 271
G
Sbjct: 424 YPG 426
>gi|46908054|ref|YP_014443.1| sun protein [Listeria monocytogenes serotype 4b str. F2365]
gi|47093059|ref|ZP_00230837.1| sun protein [Listeria monocytogenes str. 4b H7858]
gi|254826136|ref|ZP_05231137.1| sun protein [Listeria monocytogenes FSL J1-194]
gi|254852729|ref|ZP_05242077.1| sun protein [Listeria monocytogenes FSL R2-503]
gi|254933294|ref|ZP_05266653.1| sun protein [Listeria monocytogenes HPB2262]
gi|300763865|ref|ZP_07073862.1| sun protein [Listeria monocytogenes FSL N1-017]
gi|404281435|ref|YP_006682333.1| tRNA and rRNA cytosine-C5-methylase [Listeria monocytogenes
SLCC2755]
gi|404287251|ref|YP_006693837.1| tRNA and rRNA cytosine-C5-methylase [Listeria monocytogenes
serotype 7 str. SLCC2482]
gi|405750174|ref|YP_006673640.1| tRNA and rRNA cytosine-C5-methylase [Listeria monocytogenes ATCC
19117]
gi|405753049|ref|YP_006676514.1| tRNA and rRNA cytosine-C5-methylase [Listeria monocytogenes
SLCC2378]
gi|405755983|ref|YP_006679447.1| tRNA and rRNA cytosine-C5-methylase [Listeria monocytogenes
SLCC2540]
gi|424714697|ref|YP_007015412.1| Ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes serotype 4b str. LL195]
gi|424823583|ref|ZP_18248596.1| Ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes str. Scott A]
gi|46881324|gb|AAT04620.1| sun protein [Listeria monocytogenes serotype 4b str. F2365]
gi|47018560|gb|EAL09315.1| sun protein [Listeria monocytogenes serotype 4b str. H7858]
gi|258606052|gb|EEW18660.1| sun protein [Listeria monocytogenes FSL R2-503]
gi|293584854|gb|EFF96886.1| sun protein [Listeria monocytogenes HPB2262]
gi|293595376|gb|EFG03137.1| sun protein [Listeria monocytogenes FSL J1-194]
gi|300515601|gb|EFK42651.1| sun protein [Listeria monocytogenes FSL N1-017]
gi|332312263|gb|EGJ25358.1| Ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes str. Scott A]
gi|404219374|emb|CBY70738.1| tRNA and rRNA cytosine-C5-methylase, putative [Listeria
monocytogenes ATCC 19117]
gi|404222249|emb|CBY73612.1| putative tRNA and rRNA cytosine-C5-methylase [Listeria
monocytogenes SLCC2378]
gi|404225183|emb|CBY76545.1| putative tRNA and rRNA cytosine-C5-methylase [Listeria
monocytogenes SLCC2540]
gi|404228070|emb|CBY49475.1| putative tRNA and rRNA cytosine-C5-methylase [Listeria
monocytogenes SLCC2755]
gi|404246180|emb|CBY04405.1| tRNA and rRNA cytosine-C5-methylase, putative [Listeria
monocytogenes serotype 7 str. SLCC2482]
gi|424013881|emb|CCO64421.1| Ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes serotype 4b str. LL195]
Length = 444
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 88/246 (35%), Positives = 128/246 (52%), Gaps = 41/246 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+LA + L ++ VLD CAAPG K THIA M+ TG + ALD + + +++
Sbjct: 234 IQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQ 293
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
K+LQL +I+T D+ +T + E+FDRIL+DAPCSGFG ++P
Sbjct: 294 AAKRLQLLNIRTAHLDARTASTM---------FEPETFDRILVDAPCSGFGVLRRKPDIK 344
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
A + +K I A IQ +L V + V K++GILVY TC++ EENE
Sbjct: 345 YAKT----EKDIHKLAEIQLAILDDVSQLV-----------KENGILVYSTCTIDKEENE 389
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
V+ L +HPE L + L K + + +Q L+PTD +D GFF
Sbjct: 390 TVLRAFLEKHPEFTLEPVV-------LPEKLAQIKKDDFIQ-----LLPTDIGSD--GFF 435
Query: 306 ICKLRK 311
+ LRK
Sbjct: 436 VSSLRK 441
>gi|427731853|ref|YP_007078090.1| ribosomal RNA small subunit methyltransferase RsmB [Nostoc sp. PCC
7524]
gi|427367772|gb|AFY50493.1| ribosomal RNA small subunit methyltransferase RsmB [Nostoc sp. PCC
7524]
Length = 449
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 89/273 (32%), Positives = 135/273 (49%), Gaps = 45/273 (16%)
Query: 11 LWLDRAGFVSVLRLPA--RQRPSLSIYCYALDILFRGVAVEITN--VLSQ-VPNVA---- 61
+WL++ G + RL Q P++ + L V +T+ +L++ +PN+
Sbjct: 158 VWLEQLGLEATERLCEWMNQTPTIDLRINPLRTSIEEVETSLTSAGILARWIPNLPQALR 217
Query: 62 LDSSMGILQNLPSI-------------LAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMN 108
L + G ++NLP L H+LD QPG+ V+D CAAPG K TH+A LM
Sbjct: 218 LIGNTGPIKNLPGFSQGWWVVQDASAQLVSHFLDPQPGEVVVDACAAPGGKTTHMAELME 277
Query: 109 DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDR 168
D G + A D++ R+ KL+E ++L L SIQ DS + SQ + + DR
Sbjct: 278 DQGKIWACDRTASRLRKLKENAQRLGLHSIQICTGDSRDL---SQFN--------HTADR 326
Query: 169 ILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKK 228
+LLDAPCSG G +A + + + + +QK+L+ FV K
Sbjct: 327 VLLDAPCSGLGTLHRHADAR-WRQTPESVFELSTLQKELMSQTSNFV-----------KP 374
Query: 229 DGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
G+LVY TC+L ENE VI L +HP+ ++V
Sbjct: 375 GGVLVYATCTLHPAENEDVITEFLTKHPDWQIV 407
>gi|255522012|ref|ZP_05389249.1| sun protein [Listeria monocytogenes FSL J1-175]
Length = 444
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 88/246 (35%), Positives = 128/246 (52%), Gaps = 41/246 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+LA + L ++ VLD CAAPG K THIA M+ TG + ALD + + +++
Sbjct: 234 IQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQ 293
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
K+LQL +I+T D+ +T + E+FDRIL+DAPCSGFG ++P
Sbjct: 294 AAKRLQLLNIRTAHLDARTASTM---------FEPETFDRILVDAPCSGFGVLRRKPDIK 344
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
A + +K I A IQ +L V + V K++GILVY TC++ EENE
Sbjct: 345 YAKT----EKDIHKLAEIQLAILDDVSQLV-----------KENGILVYSTCTIDKEENE 389
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
V+ L +HPE L + L K + + +Q L+PTD +D GFF
Sbjct: 390 TVLLAFLEKHPEFTLEPVV-------LPEKLAQIKKDDFIQ-----LLPTDIGSD--GFF 435
Query: 306 ICKLRK 311
+ LRK
Sbjct: 436 VSSLRK 441
>gi|315282824|ref|ZP_07871146.1| ribosomal RNA small subunit methyltransferase B [Listeria marthii
FSL S4-120]
gi|313613532|gb|EFR87354.1| ribosomal RNA small subunit methyltransferase B [Listeria marthii
FSL S4-120]
Length = 400
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/246 (35%), Positives = 130/246 (52%), Gaps = 41/246 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+LA + L ++ VLD CAAPG K THIA M+ TG + ALD + + +++
Sbjct: 190 IQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQ 249
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
K+LQL +I+T D+ +T + E+FDRIL+DAPCSGFG ++P
Sbjct: 250 AAKRLQLLNIRTAHLDARTASTM---------FEPETFDRILVDAPCSGFGVLRRKPDIK 300
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
A + +K I A IQ +L V + L+K++GILVY TC++ EENE
Sbjct: 301 YAKT----EKDIHKLAEIQLAILDDVSQ-----------LVKENGILVYSTCTIDKEENE 345
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
V+ L +HPE ++ + L K + + +Q L+PTD +D GFF
Sbjct: 346 TVLRAFLEKHPEFKIEPVV-------LPEKLAQIKKDDYIQ-----LLPTDIGSD--GFF 391
Query: 306 ICKLRK 311
+ LRK
Sbjct: 392 VSSLRK 397
>gi|157692254|ref|YP_001486716.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus pumilus
SAFR-032]
gi|157681012|gb|ABV62156.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus pumilus
SAFR-032]
Length = 447
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/248 (34%), Positives = 125/248 (50%), Gaps = 40/248 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L LD QPG+ VLD CAAPG K THIA MND G +++LD + +V +++
Sbjct: 235 IQDESSMLVARALDPQPGETVLDACAAPGGKSTHIAERMNDEGQIVSLDLHEHKVKLIKQ 294
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP-MF 184
K+L L+ I+ D+ + + SFDRIL+DAPCSGFG ++P M
Sbjct: 295 AAKRLNLTQIEAKALDARKAKDD---------YSEASFDRILIDAPCSGFGVIRRKPDMK 345
Query: 185 YNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
Y + + A IQ+ +L+ + PLLK G LVY TC++ EN
Sbjct: 346 YTKSP-----EDSARLAIIQQAILK-----------ETAPLLKPGGTLVYSTCTMDPSEN 389
Query: 245 EAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
+ VI L H + E P L + ++ L + +Q ++P TD GF
Sbjct: 390 QQVIHAFLQEHQDFE-----PDLSL----NERLPEQVAPFVQNGSVQILPHYFGTD--GF 438
Query: 305 FICKLRKK 312
FIC +RKK
Sbjct: 439 FICSMRKK 446
>gi|56750589|ref|YP_171290.1| sun protein [Synechococcus elongatus PCC 6301]
gi|56685548|dbj|BAD78770.1| sun protein [Synechococcus elongatus PCC 6301]
Length = 405
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/208 (37%), Positives = 105/208 (50%), Gaps = 27/208 (12%)
Query: 54 LSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTL 113
+ Q+P D ++Q+ + L H +D QPG+ VLD+CAAPG K TH+A LM D G +
Sbjct: 183 IRQLPG--FDEGWWMVQDSSAQLIAHLVDPQPGETVLDVCAAPGGKSTHLAELMGDRGQV 240
Query: 114 IALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDA 173
IA D S R+ K++E ++LQLSSI T D +I DRIL+DA
Sbjct: 241 IACDSSAKRLRKVQENAQRLQLSSITTRAIDGRQIKGI-------------QADRILVDA 287
Query: 174 PCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILV 233
PCSG G + + D + A +Q ++L A LK G LV
Sbjct: 288 PCSGLGILHRHADGRWRQSPD-SVAELAQLQSEILDAA-----------AACLKPAGTLV 335
Query: 234 YCTCSLSVEENEAVIAWILHRHPEVELV 261
Y TC+L ENEAVI L RHP+ ++
Sbjct: 336 YATCTLHPAENEAVIEQFLQRHPDWQMA 363
>gi|389815939|ref|ZP_10207176.1| ribosomal RNA small subunit methyltransferase B [Planococcus
antarcticus DSM 14505]
gi|388465433|gb|EIM07750.1| ribosomal RNA small subunit methyltransferase B [Planococcus
antarcticus DSM 14505]
Length = 450
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 125/245 (51%), Gaps = 40/245 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L + L V+PG VLDMCAAPG K THIA MN+ GTL ALD + +V ++E
Sbjct: 237 IQDESSMLPAYALQVKPGMTVLDMCAAPGGKTTHIAEKMNNNGTLYALDLHQHKVKLIDE 296
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
+L S I+T V D + +ER +E FDRIL+DAPCSG G
Sbjct: 297 NAVRLGHSVIETIVGDGKQ-------SVER--FGEEKFDRILVDAPCSGLG----VIKRK 343
Query: 189 SFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVI 248
+ KK + +A +Q+ +Q + L D Q LK++GIL+Y TC++ EN
Sbjct: 344 PDIKYTKKEEDFARLQE--IQ-----IELLD-QAARSLKQEGILIYSTCTVDAVENRGTA 395
Query: 249 AWILHRHPEVELVQ-TLP-QLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFI 306
L HPE+E +Q LP LG+K +Q F P D +D GFFI
Sbjct: 396 ERFLKEHPEMEKIQVALPASLGIK----------YTGFVQVF-----PQDYGSD--GFFI 438
Query: 307 CKLRK 311
+K
Sbjct: 439 AAFKK 443
>gi|389573303|ref|ZP_10163378.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus sp. M 2-6]
gi|388427000|gb|EIL84810.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus sp. M 2-6]
Length = 442
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/248 (35%), Positives = 125/248 (50%), Gaps = 40/248 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L LD QPG+ VLD CAAPG K THIA MND G +++LD + +V +++
Sbjct: 230 IQDESSMLVARALDPQPGEMVLDACAAPGGKSTHIAERMNDEGKIVSLDLHEHKVKLIKQ 289
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP-MF 184
K+L L+ I+ D+ + S D SFDRIL+DAPCSGFG ++P M
Sbjct: 290 AAKRLNLTHIEAKALDARK--ASDHYD-------DASFDRILIDAPCSGFGVIRRKPDMK 340
Query: 185 YNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
Y +S + A IQ+ +L + LLK G LVY TC++ EN
Sbjct: 341 YTKSS-----EDSARLATIQQSILHETAQ-----------LLKPGGTLVYSTCTMDPTEN 384
Query: 245 EAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
+ VI L H + E P L + ++ L + +Q ++P TD GF
Sbjct: 385 QQVIHAFLQEHQDFE-----PDLSL----NERLPEQVAPFVQNGSVQILPHYFGTD--GF 433
Query: 305 FICKLRKK 312
FIC +RKK
Sbjct: 434 FICSMRKK 441
>gi|428298107|ref|YP_007136413.1| sun protein [Calothrix sp. PCC 6303]
gi|428234651|gb|AFZ00441.1| sun protein [Calothrix sp. PCC 6303]
Length = 448
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/243 (34%), Positives = 125/243 (51%), Gaps = 36/243 (14%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ + L G+ LD + + ++D CAAPG K THIA LM D GT+ A D++ R+ KL+E
Sbjct: 237 VQDSSAQLVGYLLDPKLNEVIIDTCAAPGGKTTHIAELMEDQGTIWACDRTASRMGKLKE 296
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
I++LQ+ SI+T V DS + + I D++LLDAPCSG G +A
Sbjct: 297 NIQRLQIQSIRTCVGDSRDLPQFTGI-----------ADKVLLDAPCSGLGTLHRHADAR 345
Query: 189 SFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVI 248
+ ++ A +Q +L+ +FV K GILVY TC+L +ENEAVI
Sbjct: 346 -WRQTSANVQELAKLQTELISQTSKFV-----------KPGGILVYATCTLHPQENEAVI 393
Query: 249 AWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICK 308
A L HP ++ P+ + + A ++ ++P N D GFF+ +
Sbjct: 394 ASFLENHPNCQIEAPNPESPLA------VHATPSGFIK-----VLP--HNQDMDGFFMVR 440
Query: 309 LRK 311
LRK
Sbjct: 441 LRK 443
>gi|411120538|ref|ZP_11392910.1| ribosomal RNA small subunit methyltransferase RsmB [Oscillatoriales
cyanobacterium JSC-12]
gi|410709207|gb|EKQ66722.1| ribosomal RNA small subunit methyltransferase RsmB [Oscillatoriales
cyanobacterium JSC-12]
Length = 451
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/250 (33%), Positives = 121/250 (48%), Gaps = 36/250 (14%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
++Q+ + L + LD QPG+ V+D CAAPG K THIA LMND GT+ A DK+ R+ KLE
Sbjct: 238 VVQDCSAQLVSYLLDPQPGEVVIDACAAPGGKTTHIAELMNDQGTVWACDKTSSRLKKLE 297
Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNA 187
+ +LQL SI+ H DS + +Q DR+LLDAPCSG G +A
Sbjct: 298 QNCDRLQLQSIRIHHGDSRVLPRFNQ-----------PADRVLLDAPCSGLGTLHRHADA 346
Query: 188 NSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
+ + ++Q LL+ Q +K +G+LVY TC+L ENE +
Sbjct: 347 R-WRQTPDTVNQLVSLQCALLE-----------QAASWIKANGVLVYATCTLHPAENEQI 394
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HP+ +LV + A D + ++P D GFF+
Sbjct: 395 IQQFLETHPDWQLVVPSASSLVSKFATGDGWIK-----------ILPHHHAMD--GFFMA 441
Query: 308 KLRKKYGEAP 317
+L ++ G P
Sbjct: 442 RLERQGGLKP 451
>gi|154277144|ref|XP_001539413.1| nucleolar protein NOP2 [Ajellomyces capsulatus NAm1]
gi|150412998|gb|EDN08381.1| nucleolar protein NOP2 [Ajellomyces capsulatus NAm1]
Length = 1980
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 104/311 (33%), Positives = 148/311 (47%), Gaps = 56/311 (18%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +S++ L P LAGHY L QP +
Sbjct: 1674 LINRGVVLEPVGKWSKVGLQIFESAI-PLGATPEYLAGHYILQAASSFLPVMALAPQPNE 1732
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM AAPG K T+I+ LM +TG +IA D SKPR L I +L + D+
Sbjct: 1733 RVLDMAAAPGGKTTYISALMRNTGCVIANDASKPRAKGLIGNIHRLGCKNTIISNLDA-- 1790
Query: 148 INTSSQIDIERMKLQK--ESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYAN 202
R K FDR+LLDAPCSG G + P + S ++ + +
Sbjct: 1791 ----------RQAFPKILGGFDRVLLDAPCSGTGVISKDPNIKTSKS----ERDFLALPH 1836
Query: 203 IQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQ 262
+QK+LL A + L K G +VY TCS++VEENEAV+ + L P V++V
Sbjct: 1837 MQKQLLLAAIDSTNH-------LSKTGGYIVYSTCSVTVEENEAVVQYALRNRPNVKIVD 1889
Query: 263 T-LPQLGMKGL-AHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKKYGEAPE-- 318
T L G G ++ + +D+ + R P N D GF++CKL KK G +P
Sbjct: 1890 TGLGNFGTPGFKSYMGKKFDDKMSLSRR---YFPHRENVD--GFYVCKL-KKTGPSPSSN 1943
Query: 319 ----IYIHPHL 325
+ IHP +
Sbjct: 1944 KSAVLQIHPSV 1954
>gi|422419438|ref|ZP_16496393.1| ribosomal RNA small subunit methyltransferase B [Listeria seeligeri
FSL N1-067]
gi|313632754|gb|EFR99722.1| ribosomal RNA small subunit methyltransferase B [Listeria seeligeri
FSL N1-067]
Length = 446
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 91/247 (36%), Positives = 129/247 (52%), Gaps = 43/247 (17%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+LA + L ++ VLD CAAPG K THIA M+ TG + ALD + + ++
Sbjct: 234 IQDESSMLATYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDH 293
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
K+LQL +I+T D+ +T E+FDRIL+DAPCSGFG ++P
Sbjct: 294 AAKRLQLLNIRTAHLDARTASTM---------FAPETFDRILVDAPCSGFGVLRRKPDIK 344
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
A + +K I A IQ +L V + V K++GILVY TC++ EENE
Sbjct: 345 YAKT----EKDIHKLAEIQLAILDDVSQLV-----------KENGILVYSTCTIDKEENE 389
Query: 246 AVIAWILHRHPEVELVQ-TLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
V+ L +HPE L LP+ LAH ++ +D L+PTD +D GF
Sbjct: 390 TVLRAFLEKHPEFALEPVALPE----KLAH--IKKDDFV-------QLLPTDIGSD--GF 434
Query: 305 FICKLRK 311
F+ LRK
Sbjct: 435 FVSSLRK 441
>gi|354565440|ref|ZP_08984615.1| sun protein [Fischerella sp. JSC-11]
gi|353549399|gb|EHC18841.1| sun protein [Fischerella sp. JSC-11]
Length = 491
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 102/323 (31%), Positives = 155/323 (47%), Gaps = 58/323 (17%)
Query: 11 LWLDRAGFVSVLRL--PARQRPSLSIYCYAL--DILFRGVAVEITNV----LSQVPN-VA 61
+W+D+ G + +L Q P++ + L D+ A++ + LS +P +
Sbjct: 200 VWIDQFGVMETEKLCIWMNQTPAIDLRVNPLRADLETVEAALQAAGISCQRLSHLPQALR 259
Query: 62 LDSSMGILQNLPSI-------------LAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMN 108
L S G +QNLP L GH+LD Q + V+D CAAPG K THIA LM
Sbjct: 260 LLSHPGQIQNLPGFNQGWWSIQDSSAQLVGHFLDPQIKEVVIDSCAAPGGKTTHIAELMQ 319
Query: 109 DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDR 168
DTG + A D++ R+ KL+E +++L L SI+ + DS + SQ + S DR
Sbjct: 320 DTGKIWACDRTASRMRKLQENMQRLHLKSIEICIGDSRNL---SQF--------RNSADR 368
Query: 169 ILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKK 228
+LLDAPCSG G +A + +K + +QK+LL FV K+
Sbjct: 369 VLLDAPCSGLGTLHRHADAR-WRQTPDSVKELSVLQKELLSHTSTFV-----------KE 416
Query: 229 DGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRF 288
G+LVY TC+L ENE VI L +P+ ++ + H+ + Q ++
Sbjct: 417 GGVLVYATCTLHPAENETVIESFLTENPDWKIETPSGNVSF----HR--YSTSQGWLK-- 468
Query: 289 GPPLIPTDRNTDTIGFFICKLRK 311
++P + D GFFI +LRK
Sbjct: 469 ---IVPHQYDMD--GFFIVRLRK 486
>gi|407977638|ref|ZP_11158475.1| 16S rRNA methyltransferase B [Bacillus sp. HYC-10]
gi|407415891|gb|EKF37472.1| 16S rRNA methyltransferase B [Bacillus sp. HYC-10]
Length = 447
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/248 (34%), Positives = 125/248 (50%), Gaps = 40/248 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L LD QPG+ V D CAAPG K THIA MND G +++LD + +V +++
Sbjct: 235 IQDESSMLVARALDPQPGEMVFDACAAPGGKSTHIAERMNDEGKIVSLDLHEHKVKLIKQ 294
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP-MF 184
K+L L+ I+ D+ + + + + SFDRIL+DAPCSGFG ++P M
Sbjct: 295 AAKRLNLTKIEAKALDARKASDA---------YSEASFDRILIDAPCSGFGVIRRKPDMK 345
Query: 185 YNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
Y + + A IQ+ +L + PLLK G LVY TC++ EN
Sbjct: 346 YTKSP-----EDAARLAAIQQAILH-----------ETAPLLKPGGTLVYSTCTMDPIEN 389
Query: 245 EAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
+ VI L H + E P L + ++ L + +Q ++P TD GF
Sbjct: 390 QQVIHAFLQEHQDFE-----PDLSL----NERLPEQVAPFVQNGSVQILPHYFGTD--GF 438
Query: 305 FICKLRKK 312
FIC +RKK
Sbjct: 439 FICSMRKK 446
>gi|317129258|ref|YP_004095540.1| sun protein [Bacillus cellulosilyticus DSM 2522]
gi|315474206|gb|ADU30809.1| sun protein [Bacillus cellulosilyticus DSM 2522]
Length = 449
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 133/251 (52%), Gaps = 46/251 (18%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L H L + ++VLD CAAPG K THIA M ++G +++LD K +V +E+
Sbjct: 236 VQDEGSMLVAHALSPKENERVLDACAAPGGKSTHIAEKMKNSGQIVSLDIHKHKVGLIEK 295
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP-MF 184
K+L LS I T D+ +++ + ++ SFDRIL+DAPCSG G ++P +
Sbjct: 296 NAKRLNLSIINTEQLDARQVSG---------QFEEHSFDRILVDAPCSGLGVIQRKPDLK 346
Query: 185 YNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
++ N + I A IQ ++L+AV+ PLLKK G LVY TC++ EEN
Sbjct: 347 WSKN-----EGDINRLAQIQTEILEAVW-----------PLLKKGGTLVYSTCTVDKEEN 390
Query: 245 EAVIAWILHRHPEV----ELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTD 300
VI + + +L+ LP+ A D + + ++Q F P +++TD
Sbjct: 391 NEVITQFVQKKENAQFDDQLMDRLPK------AFHDCKGKGNGMIQLF-----PGEQSTD 439
Query: 301 TIGFFICKLRK 311
GFFI + K
Sbjct: 440 --GFFISSVIK 448
>gi|170077132|ref|YP_001733770.1| ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Synechococcus sp.
PCC 7002]
gi|169884801|gb|ACA98514.1| ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Synechococcus sp.
PCC 7002]
Length = 447
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 103/326 (31%), Positives = 154/326 (47%), Gaps = 67/326 (20%)
Query: 5 QSQCYCLWLDRAGFVSVLRLPARQRPSLSIYCYALDILFR-GVAVEITNVLSQVPN-VAL 62
+++ C W +R +L R P + D L + GV E ++ +PN + L
Sbjct: 168 ETEQLCQWFNRPA-----QLDLRVNPLRANVAAVQDKLNQAGVKAE---AIANLPNALRL 219
Query: 63 DSSMGILQNLPSILAG-------------HYLDVQPGQKVLDMCAAPGNKLTHIALLMND 109
G++Q+LP G H LD QPG+ ++D CAAPG K THIA M D
Sbjct: 220 VEKRGLIQDLPGYKEGWWTIQDASAQLVTHLLDPQPGEVIIDACAAPGGKTTHIAEKMQD 279
Query: 110 TGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRI 169
GT+ A DK + R+ K+E+ ++L+LS I+T + DS T SQ + DR+
Sbjct: 280 RGTIWASDKYQARINKIEQNARRLKLSMIRTLIGDS---RTYSQF--------RNMADRV 328
Query: 170 LLDAPCSGFG---QRP-MFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPL 225
LLD PCSG G +RP + + N +KI +Q +LL G
Sbjct: 329 LLDVPCSGLGTLHKRPDIRWQQNP-----QKIAQLTQLQGELLTT-----------GATW 372
Query: 226 LKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVM 285
+K G LVY TC+L+ ENEA+ L HP+ ++V P L A++Q +
Sbjct: 373 VKPGGYLVYATCTLNPAENEAIANQFLVEHPDWQIVPPSPDLPAFPY------AQEQGWI 426
Query: 286 QRFGPPLIPTDRNTDTIGFFICKLRK 311
Q ++P + D GFF+ KL++
Sbjct: 427 Q-----VLPQRHDMD--GFFMVKLQR 445
>gi|422413366|ref|ZP_16490325.1| ribosomal RNA small subunit methyltransferase B [Listeria innocua
FSL S4-378]
gi|313618293|gb|EFR90347.1| ribosomal RNA small subunit methyltransferase B [Listeria innocua
FSL S4-378]
Length = 446
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 124/246 (50%), Gaps = 41/246 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L + L ++ VLD CAAPG K THIA M+ TG + ALD + + +++
Sbjct: 234 IQDESSMLVAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQ 293
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
K+LQL +I+T D+ +T + E+FDRIL+DAPCSGFG ++P
Sbjct: 294 AAKRLQLLNIRTAHLDARTASTM---------FESETFDRILVDAPCSGFGVLRRKPDIK 344
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
A + +K I A IQ +L V + V K++GILVY TC++ EENE
Sbjct: 345 YAKT----EKDIHKLAEIQLAILDDVSQLV-----------KENGILVYSTCTIDKEENE 389
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
V+ L +HPE L + + + D L+PTD +D GFF
Sbjct: 390 TVLRAFLEKHPEFALEPVVLPEKLAQIKKDDF------------VQLLPTDIGSD--GFF 435
Query: 306 ICKLRK 311
+ LRK
Sbjct: 436 VSSLRK 441
>gi|342180762|emb|CCC90238.1| putative nucleolar protein [Trypanosoma congolense IL3000]
Length = 568
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 144/290 (49%), Gaps = 44/290 (15%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RG+ VE S+V +S++ I + LAGHY L QP +
Sbjct: 241 LVKRGMNVEPLEKWSKVGLQIFESNVPISGTV-EYLAGHYMLQSAVSFLPVMALAPQPQE 299
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM AAPG K T+IA LM +TG + A D S PR+ L +++L +++ YD
Sbjct: 300 RVLDMAAAPGGKTTYIAQLMKNTGVIFANDISAPRIKSLNANLQRLGVTNSIVTNYDG-- 357
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKL 207
+ E++ +FDR+LLDAPC+G G ++ DK IK+ + Q +
Sbjct: 358 ------VGYEKV---MRNFDRVLLDAPCTGTG----------IISRDKSIKT--SKQYED 396
Query: 208 LQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQL 267
+Q + I L+ G LVY TCS VEENEAV+ + LHR +V +V+T
Sbjct: 397 VQRASQLQRALLLSAIDALRVGGYLVYSTCSFLVEENEAVVDFALHRR-DVTIVETGLPF 455
Query: 268 GMKGLA-HKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKKYGEA 316
G GLA ++ D+ R L P N D GFF+CKL+K EA
Sbjct: 456 GRPGLAKYRHHRFNDKLQHARR---LFPHVHNMD--GFFVCKLKKLSNEA 500
>gi|294500982|ref|YP_003564682.1| ribosomal RNA small subunit methyltransferase B [Bacillus
megaterium QM B1551]
gi|294350919|gb|ADE71248.1| ribosomal RNA small subunit methyltransferase B [Bacillus
megaterium QM B1551]
Length = 446
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/259 (33%), Positives = 132/259 (50%), Gaps = 47/259 (18%)
Query: 61 ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSK 120
A M +Q+ S+L H L + + +LD CAAPG K THIA + ++G +I+LD
Sbjct: 227 AFREGMFTVQDESSMLVAHALSAEAEELILDSCAAPGGKSTHIAEQLKNSGKVISLDIHD 286
Query: 121 PRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG- 179
+V + + ++L L++I+ V DS + Q D KE FDRIL+DAPCSGFG
Sbjct: 287 HKVKLIAQQAERLHLTNIEPTVQDSRK--AGEQFD-------KEMFDRILVDAPCSGFGV 337
Query: 180 --QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC 237
++P + ++ +K A IQ+ +L AV PLLKK G LVY TC
Sbjct: 338 MRRKPDL----KYTKTEQDVKQLARIQQDILNAV-----------APLLKKGGTLVYSTC 382
Query: 238 SLSVEENEAVIAWILHRHPEVE----LVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLI 293
++ +EN V+A L H + + LV +PQ + + H +++ L+
Sbjct: 383 TIDRDENGDVVAAFLTDHADFQKDETLVARMPQKLKQNVKHGEIQ-------------LL 429
Query: 294 PTDRNTDTIGFFICKLRKK 312
P D +D GF+I L+KK
Sbjct: 430 P-DAQSD--GFYIACLQKK 445
>gi|402085166|gb|EJT80064.1| nucleolar protein NOP2 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 715
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 137/299 (45%), Gaps = 60/299 (20%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V D+++ L P L GHY L Q G+
Sbjct: 331 LVNRGVTLEPVGKWSKVGLQIFDANV-PLGATPEYLGGHYILQAASSFLPVMALCPQEGE 389
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM AAPG K TH A LM +TG +IA D SK R L I +L ++ YD+
Sbjct: 390 RVLDMAAAPGGKTTHCAALMKNTGVIIANDPSKSRAKGLIGNIHRLGAKNVIVSNYDARE 449
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYANIQ 204
I T FDR+LLDAPCSG G + P + L+ +IQ
Sbjct: 450 IPTLMG-----------GFDRVLLDAPCSGTGVIAKDPSVKTNKTELDF----MQLPHIQ 494
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL 264
K+LL A I K G LVY TCS++VEENE V+ + L R P VEL++T
Sbjct: 495 KQLLLAA-----------IDSTKSGGYLVYSTCSVTVEENEQVVNYALSRRPNVELLETG 543
Query: 265 PQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRKKYGEAP 317
G +G + + ++F P L T R N D GF++ K KK G P
Sbjct: 544 LPFGKEGFTN--------FMGKKFHPSLKLTRRYYPHTYNMD--GFYVAKF-KKTGPTP 591
>gi|119499195|ref|XP_001266355.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Neosartorya fischeri NRRL
181]
gi|119414519|gb|EAW24458.1| nucleolar RNA methyltransferase (Nop2), putative [Neosartorya
fischeri NRRL 181]
Length = 750
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 103/308 (33%), Positives = 140/308 (45%), Gaps = 72/308 (23%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +S++ L P LAGHY L QP +
Sbjct: 324 LINRGVVLEPVGKWSKVGLQVFESAV-PLGATPEYLAGHYILQAASSFLPVMALAPQPNE 382
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM AAPG K T+I+ LM +TG +IA D SKPR L I +L + D+
Sbjct: 383 RVLDMAAAPGGKTTYISALMRNTGCVIANDASKPRAKGLIGNIHRLGCKNTIVTNLDA-- 440
Query: 148 INTSSQIDIERMKLQKE--SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYAN--- 202
R K FDR+LLDAPC+G G ++ D +K+ N
Sbjct: 441 ----------RTAFPKALGGFDRVLLDAPCTGTG----------VISKDPSVKTSKNERD 480
Query: 203 ------IQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHP 256
+Q+ LL A V G G +VY TCS++VEENEAV+ ++L + P
Sbjct: 481 FLAIPHMQRNLLLAAIDSVDHASKTG-------GYIVYSTCSVTVEENEAVVQYVLRKRP 533
Query: 257 EVELVQT-LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKL 309
V+LV T L G G + ++F P + T R N D GFF+CKL
Sbjct: 534 NVKLVDTGLGDFGSPGFT--------SYMGKKFDPKMTLTRRYFPHRENVD--GFFVCKL 583
Query: 310 RKKYGEAP 317
KK G P
Sbjct: 584 -KKTGPTP 590
>gi|320586046|gb|EFW98725.1| nucleolar RNA methyltransferase [Grosmannia clavigera kw1407]
Length = 722
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 101/292 (34%), Positives = 140/292 (47%), Gaps = 53/292 (18%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +S++ L P LAGHY L Q +
Sbjct: 312 LINRGVTLEPVGRWSKVGLQVFESNV-PLGATPEYLAGHYILQAASSFLPVMALAPQEHE 370
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM AAPG K TH+A LM +TG + A D SK R L I +L ++ YD+
Sbjct: 371 RVLDMAAAPGGKTTHMAALMKNTGVVFANDPSKARSKGLIGNIHRLGARNVIVCNYDAR- 429
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY---ANIQ 204
D R+ FDR+LLDAPCSG G + + +K K + ++Q
Sbjct: 430 -------DFPRV---IGGFDRVLLDAPCSGTG----VIAKDPSVKTNKTEKDFMQLPHVQ 475
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL 264
K+LL A V+ G G LVY TCS++VEENEAV+A+ L R P V LV+T
Sbjct: 476 KQLLLAAIDSVNHASKTG-------GYLVYSTCSVTVEENEAVVAYALKRRPNVRLVETG 528
Query: 265 PQLGMKGLAHKDLEAEDQAVMQR-FGPPLIPTDR----NTDTIGFFICKLRK 311
G +G ++M + F P L T R + + GFF+ KL+K
Sbjct: 529 LPFGKEGFT---------SIMGKTFDPTLKMTRRFYPHHQNVDGFFVAKLQK 571
>gi|428204437|ref|YP_007083026.1| ribosomal RNA small subunit methyltransferase RsmB [Pleurocapsa sp.
PCC 7327]
gi|427981869|gb|AFY79469.1| ribosomal RNA small subunit methyltransferase RsmB [Pleurocapsa sp.
PCC 7327]
Length = 446
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 106/195 (54%), Gaps = 29/195 (14%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ + L H LD QPG+ V+D CAAPG K THIA LM D GT+ A D+ + R+ KL+E
Sbjct: 239 VQDSSAQLVAHLLDPQPGEVVIDACAAPGGKTTHIAELMGDRGTIWACDRVESRLRKLQE 298
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
I++LQL SIQ DS + SQ ++ DR+LLDAPCSG G +RP
Sbjct: 299 NIQRLQLQSIQICTGDSRQF---SQF--------RQRGDRVLLDAPCSGLGTLHRRPDI- 346
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ +KI + +Q++LL +V K G LVY TC+L+ ENE
Sbjct: 347 ---RWRQTPEKIAQLSRLQEELLTQTATWV-----------KSGGTLVYVTCTLNSLENE 392
Query: 246 AVIAWILHRHPEVEL 260
V+ RHP+ ++
Sbjct: 393 TVVRAFCDRHPDWQI 407
>gi|282895327|ref|ZP_06303529.1| Fmu, rRNA SAM-dependent methyltransferase [Raphidiopsis brookii D9]
gi|281199633|gb|EFA74493.1| Fmu, rRNA SAM-dependent methyltransferase [Raphidiopsis brookii D9]
Length = 465
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/270 (31%), Positives = 134/270 (49%), Gaps = 44/270 (16%)
Query: 5 QSQCYCLWLDRAGFVSVLRLPARQRPSLSIYCYALDILFRGVAVEITNVLSQVPNVALDS 64
+++ C W+++ + LR+ R SL + ++ +F+ + + + + L +
Sbjct: 188 ETEKLCQWMNQTPTID-LRVNIL-RASLEM----VESVFKKAGILVDRIPHLPQGLRLVN 241
Query: 65 SMGILQNLPSI-------------LAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTG 111
G +QNLP L GH LD +PG+ ++D+CAAPG K THIA LM D G
Sbjct: 242 PAGPIQNLPGFTEGWWCIQDAAAQLVGHLLDPKPGEVIIDVCAAPGGKTTHIAELMGDNG 301
Query: 112 TLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILL 171
+ A D++ R+ KL E ++L+L SI+ DS + DR+LL
Sbjct: 302 KIYACDRTPSRLRKLSENAQRLRLQSIEIFPGDSRNFTQFHHVA-----------DRVLL 350
Query: 172 DAPCSGFGQRPMFYNANSFLNLD-KKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDG 230
DAPCSG G M +A++ D + A+IQK+L+ +FV K G
Sbjct: 351 DAPCSGLGT--MHRHADARWRQDPSSVGDLAHIQKELISHTAKFV-----------KPGG 397
Query: 231 ILVYCTCSLSVEENEAVIAWILHRHPEVEL 260
+LVY TC+L +ENE +I LH +P+ E+
Sbjct: 398 VLVYATCTLHPQENEDLIREFLHINPQWEM 427
>gi|452855521|ref|YP_007497204.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
gi|452079781|emb|CCP21538.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
Length = 446
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 123/247 (49%), Gaps = 38/247 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L LD +PG+ VLD CAAPG K HIA LM + G+L +LD + +V ++E
Sbjct: 234 IQDESSMLVARALDPKPGETVLDACAAPGGKSAHIAELMENEGSLTSLDLHRHKVKLIKE 293
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
++L L+ I D+ + + E FDR+L+DAPCSGFG ++P
Sbjct: 294 GAERLGLTIIDAQTMDARKAGEA---------FGAERFDRVLVDAPCSGFGVIRRKPDM- 343
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ + + A IQ +L+ + PL+KK G LVY TC++ ENE
Sbjct: 344 ---KYTKTPEDSRRLAEIQLGILREI-----------APLVKKGGTLVYSTCTMDRTENE 389
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
V+ + HPE E P L ++ K L + + +Q ++P TD GFF
Sbjct: 390 EVMHAFIQEHPEFE-----PDLSLE----KRLPEKARPFVQDGSLQILPHYFGTD--GFF 438
Query: 306 ICKLRKK 312
I +RKK
Sbjct: 439 ISSMRKK 445
>gi|403234848|ref|ZP_10913434.1| 16S rRNA methyltransferase B [Bacillus sp. 10403023]
Length = 447
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 129/251 (51%), Gaps = 46/251 (18%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L V+ VLD CAAPG K THIA ++ +TG +I+LD K ++ ++E
Sbjct: 235 IQDESSMLVARALGVEKDDYVLDSCAAPGGKTTHIAQILQNTGKVISLDLHKHKIKLIDE 294
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
+ +L L +++T +DS + ++ +SFD+IL+DAPCSGFG ++P
Sbjct: 295 AVTRLGLENVETKAFDSRKAGEIFEV---------QSFDKILVDAPCSGFGVIRRKPDIK 345
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ S L+ S A IQ +L V LLKKDGILVY TC++ EENE
Sbjct: 346 YSKSALDNS----SLAKIQLDILTEVS-----------TLLKKDGILVYSTCTIDYEENE 390
Query: 246 AVIAWILHRHPEVELVQT----LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDT 301
VI L ++ + L +T LP++ + + L+ P TD
Sbjct: 391 GVIKTFLEQNKDFILDETIENYLPEIVKPYIKNGQLQ---------LYPHYFGTD----- 436
Query: 302 IGFFICKLRKK 312
GF+I +LRK+
Sbjct: 437 -GFYIARLRKQ 446
>gi|389748961|gb|EIM90138.1| NOL1/NOP2/sun family RNA met [Stereum hirsutum FP-91666 SS1]
Length = 699
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 96/305 (31%), Positives = 143/305 (46%), Gaps = 55/305 (18%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E + V +SS+ I P LAGHY L QP +
Sbjct: 367 LINRGVNLEPIGKWTNVGLQVFESSVPIGAT-PEYLAGHYMLQAASSFLPVIALSPQPQE 425
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM +APG K THIA L+ +TG + A D +K R L + +L ++ YD
Sbjct: 426 RVLDMASAPGGKTTHIAALLQNTGVVFANDANKARTKSLTANVHRLGCKNVVVCSYDGRE 485
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYA---NIQ 204
FDR+LLDAPCSG G + +S + ++K + +A ++Q
Sbjct: 486 FPKVMG-----------GFDRVLLDAPCSGTG----VISKDSSVKVNKSDRDFALLSHLQ 530
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL 264
K+L+ V+ P K G +VY TCS++V+ENEAV+ + L + P V+LV T
Sbjct: 531 KQLILCAIDSVN-------PNSKTGGYIVYSTCSVTVDENEAVVDYALRKRPNVKLVDTG 583
Query: 265 PQLGMKGLAHKDLEAEDQAV--MQRFGPPLIPTDRNTDTIGFFICKL--------RKKYG 314
+ G G A + D++V +RF P + D GFF+ K +K G
Sbjct: 584 LEFGKPGYARYRGKTFDESVKLTRRFYPHVHNMD------GFFVAKFKVEKRVKTKKDEG 637
Query: 315 EAPEI 319
E E+
Sbjct: 638 EEKEV 642
>gi|434404680|ref|YP_007147565.1| ribosomal RNA small subunit methyltransferase RsmB [Cylindrospermum
stagnale PCC 7417]
gi|428258935|gb|AFZ24885.1| ribosomal RNA small subunit methyltransferase RsmB [Cylindrospermum
stagnale PCC 7417]
Length = 449
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 98/328 (29%), Positives = 151/328 (46%), Gaps = 68/328 (20%)
Query: 11 LWLDRAGFVSVLRLPA--RQRPSLSIYCYAL-------DILFRGVAVEITNVLSQVPNVA 61
+WL++ GFV +L Q P++ + L + F+ V + + S +
Sbjct: 158 VWLEQLGFVETEKLCEWMNQTPTIDLRVNLLRSSIEQVESAFKSAGVLVRRIPSLPQALR 217
Query: 62 LDSSMGILQNLPSILAG-------------HYLDVQPGQKVLDMCAAPGNKLTHIALLMN 108
L S G +QNLP G H LD QPG+ V+D+CAAPG K THIA LM
Sbjct: 218 LIGSTGPIQNLPGFREGWWTVQDSSAQLVSHLLDPQPGEVVIDVCAAPGGKTTHIAELMG 277
Query: 109 DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDR 168
D G + A D++ R+ KL++ ++L L SI+ DS + + + DR
Sbjct: 278 DNGKVWACDRTPSRLRKLQQNAQRLNLHSIEICTGDSRNLPQF-----------QNTADR 326
Query: 169 ILLDAPCSGFGQRPMFYNANS-FLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLK 227
+L+DAPCSG G M +A++ + + ++ + +Q +LL FV K
Sbjct: 327 VLIDAPCSGLGT--MHRHADARWRQTPESVRELSLLQTELLAHTSTFV-----------K 373
Query: 228 KDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQR 287
+ G+LVY TC+L ENE VI+ L +P + + L+ D A
Sbjct: 374 QGGVLVYATCTLHPAENEGVISQFLAEYPHWQ------------IETDSLDLPDSAYSV- 420
Query: 288 FGPP----LIPTDRNTDTIGFFICKLRK 311
PP + P ++ D GFF+ +LRK
Sbjct: 421 --PPGWLKVWPHQQDMD--GFFMVRLRK 444
>gi|299821751|ref|ZP_07053639.1| ribosomal RNA small subunit methyltransferase B [Listeria grayi DSM
20601]
gi|299817416|gb|EFI84652.1| ribosomal RNA small subunit methyltransferase B [Listeria grayi DSM
20601]
Length = 445
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 129/247 (52%), Gaps = 43/247 (17%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L + L ++ VLD CAAPG K THIA MN TG + ALD + + +E+
Sbjct: 234 IQDESSMLPAYALQLEEQMTVLDACAAPGGKTTHIAEKMNGTGIVYALDIHEKKTKLIEQ 293
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
+L L +I+T YD+ + +S++ + E FDRIL+DAPCSGFG ++P
Sbjct: 294 AADRLGLMNIRTKAYDARK---ASEV------FEPEMFDRILVDAPCSGFGVLRRKPDI- 343
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ + I+ A IQ ++L+ V + LLK++GILVY TC++ EEN
Sbjct: 344 ---KYSKTENDIQRLAAIQLEILEEVSQ-----------LLKENGILVYSTCTIDKEENA 389
Query: 246 AVIAWILHRHPEVELVQT-LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
V+ L HPE +L + +P+ + L LE L+PT +D GF
Sbjct: 390 TVLKTFLANHPEFQLERVQVPKAVAELLTEDYLE-------------LLPTAIGSD--GF 434
Query: 305 FICKLRK 311
F+ +RK
Sbjct: 435 FVSSIRK 441
>gi|16801002|ref|NP_471270.1| hypothetical protein lin1936 [Listeria innocua Clip11262]
gi|423098731|ref|ZP_17086439.1| ribosomal RNA small subunit methyltransferase B [Listeria innocua
ATCC 33091]
gi|16414437|emb|CAC97166.1| lin1936 [Listeria innocua Clip11262]
gi|370794558|gb|EHN62321.1| ribosomal RNA small subunit methyltransferase B [Listeria innocua
ATCC 33091]
Length = 446
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/246 (35%), Positives = 127/246 (51%), Gaps = 41/246 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L + L ++ VLD CAAPG K THIA M+ TG + ALD + + +++
Sbjct: 234 IQDESSMLVAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQ 293
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
K+LQL +I+T D+ +T + E+FDRIL+DAPCSGFG ++P
Sbjct: 294 AAKRLQLLNIRTAHLDARTASTM---------FEPETFDRILVDAPCSGFGVLRRKPDIK 344
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
A + +K I A IQ +L V + V K++GILVY TC++ EENE
Sbjct: 345 YAKT----EKDIHKLAEIQLAILDDVSQLV-----------KENGILVYSTCTIDKEENE 389
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
V+ L +HPE L + L K + + +Q L+PTD +D GFF
Sbjct: 390 TVLRAFLEKHPEFALEPVV-------LPEKLAQIKKDDFVQ-----LLPTDIGSD--GFF 435
Query: 306 ICKLRK 311
+ LRK
Sbjct: 436 VSSLRK 441
>gi|422416342|ref|ZP_16493299.1| ribosomal RNA small subunit methyltransferase B [Listeria innocua
FSL J1-023]
gi|313623277|gb|EFR93521.1| ribosomal RNA small subunit methyltransferase B [Listeria innocua
FSL J1-023]
Length = 446
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/246 (35%), Positives = 127/246 (51%), Gaps = 41/246 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L + L ++ VLD CAAPG K THIA M+ TG + ALD + + +++
Sbjct: 234 IQDESSMLVAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQ 293
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
K+LQL +I+T D+ +T + E+FDRIL+DAPCSGFG ++P
Sbjct: 294 AAKRLQLLNIRTAHLDARTASTM---------FEPETFDRILVDAPCSGFGVLRRKPDIK 344
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
A + +K I A IQ +L V + V K++GILVY TC++ EENE
Sbjct: 345 YAKT----EKDIHKLAEIQLAILDDVSQLV-----------KENGILVYSTCTIDKEENE 389
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
V+ L +HPE L + L K + + +Q L+PTD +D GFF
Sbjct: 390 TVLRAFLEKHPEFALEPVV-------LPEKLAQIKKDDFVQ-----LLPTDIGSD--GFF 435
Query: 306 ICKLRK 311
+ LRK
Sbjct: 436 VSSLRK 441
>gi|295706330|ref|YP_003599405.1| ribosomal RNA small subunit methyltransferase B [Bacillus
megaterium DSM 319]
gi|294803989|gb|ADF41055.1| ribosomal RNA small subunit methyltransferase B [Bacillus
megaterium DSM 319]
Length = 446
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 132/259 (50%), Gaps = 47/259 (18%)
Query: 61 ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSK 120
A M +Q+ S+L H L + + +LD CAAPG K THIA + ++G +I+LD
Sbjct: 227 AFREGMFTVQDESSMLVAHALGAEAEELILDSCAAPGGKSTHIAEQLRNSGKVISLDIHD 286
Query: 121 PRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG- 179
+V + + ++L L++I+ V DS + Q D KE FDRIL+DAPCSGFG
Sbjct: 287 HKVKLIAQQAERLHLTNIEPTVQDSRK--AGEQFD-------KEMFDRILVDAPCSGFGV 337
Query: 180 --QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC 237
++P + ++ IK A IQ+ +L AV PLLKK G LVY TC
Sbjct: 338 MRRKPDL----KYTKTEQDIKQLARIQQDILNAV-----------APLLKKGGTLVYSTC 382
Query: 238 SLSVEENEAVIAWILHRHPEVELVQTL----PQLGMKGLAHKDLEAEDQAVMQRFGPPLI 293
++ +EN V+A L H + + +TL PQ + + H +++ L+
Sbjct: 383 TIDRDENGDVVAAFLADHADFQKDETLAARMPQKLKQNVKHGEIQ-------------LL 429
Query: 294 PTDRNTDTIGFFICKLRKK 312
P D +D GF+I L+KK
Sbjct: 430 P-DAQSD--GFYIACLQKK 445
>gi|452974522|gb|EME74342.1| 16S rRNA methyltransferase B [Bacillus sonorensis L12]
Length = 450
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 121/247 (48%), Gaps = 38/247 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L +PG+ VLD CAAPG K THI L+ +TG +++LD + +V ++E
Sbjct: 235 IQDESSMLVARALGPKPGETVLDACAAPGGKSTHIGELLENTGKVVSLDLHRHKVKLIQE 294
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
+L L++I T D+ + + Q E FDRIL+DAPCSGFG ++P
Sbjct: 295 AAGRLGLTNIDTRAMDARKAAEA---------FQPEQFDRILVDAPCSGFGVIRRKPDL- 344
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ + A IQ +L+ + PLLKK G LVY TC++ ENE
Sbjct: 345 ---KYSKTPEDSARLAGIQLAILKEI-----------APLLKKGGTLVYSTCTMDRTENE 390
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
V+ L H E E T+ + L + +Q ++P TD GFF
Sbjct: 391 QVMRAFLEEHDEFEADTTI---------RERLPEKAAPYVQGGSIQILPHYFGTD--GFF 439
Query: 306 ICKLRKK 312
IC +RK+
Sbjct: 440 ICSMRKR 446
>gi|194476557|ref|YP_002048736.1| Sun protein (Fmu protein) [Paulinella chromatophora]
gi|171191564|gb|ACB42526.1| Sun protein (Fmu protein) [Paulinella chromatophora]
Length = 451
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 109/209 (52%), Gaps = 34/209 (16%)
Query: 59 NVALDSSMGILQNLPSILAGHY-------------LDVQPGQKVLDMCAAPGNKLTHIAL 105
+A+ +G LQ LP GH+ LD PG +VLD+C+APG K THIA
Sbjct: 233 GIAILGRLGNLQILPGFKLGHWCIQDRAAQWISPLLDPHPGHRVLDVCSAPGGKSTHIAE 292
Query: 106 LMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ-KE 164
LM D G + ALD SK R+ K+ K+L L +I T V D I I +K + K
Sbjct: 293 LMGDVGEIWALDSSKVRLQKVVLNAKRLGLQTIHTLVADG--------ITISDLKPEWKG 344
Query: 165 SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIP 224
+FDRIL+DAPCSG G +A + + IK IQ++LL+ + IP
Sbjct: 345 TFDRILIDAPCSGLGTLVRHSDARWRITFN-DIKELERIQERLLKGI-----------IP 392
Query: 225 LLKKDGILVYCTCSLSVEENEAVIAWILH 253
LLK G LVY TC+++ ENE I +L+
Sbjct: 393 LLKPGGKLVYATCTINPNENETQITKLLN 421
>gi|385264700|ref|ZP_10042787.1| RsmB [Bacillus sp. 5B6]
gi|385149196|gb|EIF13133.1| RsmB [Bacillus sp. 5B6]
Length = 447
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 123/247 (49%), Gaps = 38/247 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L LD +PG+ VLD CAAPG K HIA LM + G+L +LD + +V ++E
Sbjct: 235 IQDESSMLVARALDPKPGETVLDACAAPGGKSAHIAELMQNEGSLTSLDLHRHKVKLIKE 294
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
++L L+ I D+ + + E FDRIL+DAPCSGFG ++P
Sbjct: 295 GAERLGLTIIDAQTMDARKAGEA---------FGAERFDRILVDAPCSGFGVIRRKPDM- 344
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ + + + IQ +L+ + PL+KK G LVY TC++ ENE
Sbjct: 345 ---KYTKTPEDSRRLSEIQLGILREI-----------APLVKKGGTLVYSTCTMDRTENE 390
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
V+ + HPE E P L ++ K L + + +Q ++P TD GFF
Sbjct: 391 EVMHAFIQEHPEFE-----PDLSLE----KRLPEKARPFVQDGSLQILPHYFGTD--GFF 439
Query: 306 ICKLRKK 312
I +RKK
Sbjct: 440 ISSMRKK 446
>gi|375362218|ref|YP_005130257.1| sun protein [Bacillus amyloliquefaciens subsp. plantarum CAU B946]
gi|421731756|ref|ZP_16170879.1| 16S rRNA methyltransferase B [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|451347055|ref|YP_007445686.1| 16S rRNA methyltransferase B [Bacillus amyloliquefaciens IT-45]
gi|371568212|emb|CCF05062.1| sun protein [Bacillus amyloliquefaciens subsp. plantarum CAU B946]
gi|407073969|gb|EKE46959.1| 16S rRNA methyltransferase B [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|449850813|gb|AGF27805.1| 16S rRNA methyltransferase B [Bacillus amyloliquefaciens IT-45]
Length = 447
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 123/247 (49%), Gaps = 38/247 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L LD +PG+ VLD CAAPG K HIA LM + G+L +LD + +V ++E
Sbjct: 235 IQDESSMLVARALDPKPGETVLDACAAPGGKSAHIAELMENEGSLTSLDLHRHKVKLIKE 294
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
++L L+ I D+ + + E FDRIL+DAPCSGFG ++P
Sbjct: 295 GAERLGLTIIDAQTMDARKAGEA---------FGAERFDRILVDAPCSGFGVIRRKPDM- 344
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ + + + IQ +L+ + PL+KK G LVY TC++ ENE
Sbjct: 345 ---KYTKTPEDSRRLSEIQLGILREI-----------APLVKKGGTLVYSTCTMDRTENE 390
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
V+ + HPE E P L ++ K L + + +Q ++P TD GFF
Sbjct: 391 EVMHAFIQEHPEFE-----PDLSLE----KRLPEKARPFVQDGSLQILPHYFGTD--GFF 439
Query: 306 ICKLRKK 312
I +RKK
Sbjct: 440 ISSMRKK 446
>gi|384265156|ref|YP_005420863.1| sun protein [Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387898153|ref|YP_006328449.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
amyloliquefaciens Y2]
gi|380498509|emb|CCG49547.1| sun protein [Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387172263|gb|AFJ61724.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
amyloliquefaciens Y2]
Length = 447
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 123/247 (49%), Gaps = 38/247 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L LD +PG+ VLD CAAPG K HIA LM + G+L +LD + +V ++E
Sbjct: 235 IQDESSMLVARALDPKPGETVLDACAAPGGKSAHIAELMENEGSLTSLDLHRHKVKLIKE 294
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
++L L+ I D+ + + E FDRIL+DAPCSGFG ++P
Sbjct: 295 GAERLGLTIIDAQTMDARKAGEA---------FGAERFDRILVDAPCSGFGVIRRKPDM- 344
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ + + + IQ +L+ + PL+KK G LVY TC++ ENE
Sbjct: 345 ---KYTKTPEDSRRLSEIQLGILREI-----------APLVKKGGTLVYSTCTMDRTENE 390
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
V+ + HPE E P L ++ K L + + +Q ++P TD GFF
Sbjct: 391 EVMHAFIQEHPEFE-----PDLSLE----KRLPEKARPFVQDGSLQILPHYFGTD--GFF 439
Query: 306 ICKLRKK 312
I +RKK
Sbjct: 440 ISSMRKK 446
>gi|90082132|dbj|BAE90347.1| unnamed protein product [Macaca fascicularis]
Length = 380
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 67/150 (44%), Positives = 91/150 (60%), Gaps = 6/150 (4%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
LQNLPS L H L+ QPG+K+LD+CAAPG K THIA LM+D G +IA+DK +V K++
Sbjct: 217 FLQNLPSALVTHVLNPQPGEKILDLCAAPGGKTTHIAALMHDQGEVIAMDKIFSKVEKIK 276
Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDIERMK--LQKESFDRILLDAPCSGFGQRPMFY 185
+ L L+SI+ +D T+ ++ + ESFDRILLDAPCSG GQRP
Sbjct: 277 QNALLLGLNSIRAFCFDGTKAVKLDMVEDTEGEPPFLPESFDRILLDAPCSGMGQRPNMA 336
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFV 215
S K++ SY +Q+KL A + +
Sbjct: 337 CTWSL----KELASYQPLQRKLFTAAVQLL 362
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 308 KLRKKY-GEAPEIYIHPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFA 366
+L+K++ G + I HP L D ++I P++ +++ + IV C AVLRGA V+A
Sbjct: 74 ELQKQFNGLSVPILQHPDLQDVLLI-PVIGPRKNIKKQQCEAIVGAQCGNAVLRGAHVYA 132
Query: 367 PGVLA 371
PG+++
Sbjct: 133 PGIVS 137
>gi|429505125|ref|YP_007186309.1| 16S rRNA methyltransferase B [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|429486715|gb|AFZ90639.1| 16S rRNA methyltransferase B [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
Length = 447
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 84/260 (32%), Positives = 128/260 (49%), Gaps = 39/260 (15%)
Query: 57 VPNVALDSSMGI-LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIA 115
+ N A + G+ +Q+ S+L LD +PG+ VLD CAAPG K HIA LM + G+L +
Sbjct: 222 IANTAFFQNGGVSIQDESSMLVARALDPKPGETVLDACAAPGGKSAHIAELMENEGSLTS 281
Query: 116 LDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPC 175
LD + +V ++E ++L L+ I D+ + E FDR+L+DAPC
Sbjct: 282 LDLHRHKVKLIKEGAERLGLTIIDAQTMDARKAGEV---------FGAERFDRVLVDAPC 332
Query: 176 SGFG---QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGIL 232
SGFG ++P + + + + IQ +L+ + PL+KK G L
Sbjct: 333 SGFGVIRRKPDM----KYTKTPEDSRRLSEIQLGILREI-----------APLVKKGGTL 377
Query: 233 VYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPL 292
VY TC++ ENE V+ + HPE E P L ++ K L + + +Q +
Sbjct: 378 VYSTCTMDRTENEEVMHAFIQEHPEFE-----PDLSLE----KRLPEKARPFVQDGSLQI 428
Query: 293 IPTDRNTDTIGFFICKLRKK 312
+P TD GFFI +RKK
Sbjct: 429 LPHYFGTD--GFFISSMRKK 446
>gi|308173537|ref|YP_003920242.1| RNA-binding protein [Bacillus amyloliquefaciens DSM 7]
gi|384159442|ref|YP_005541515.1| 16S rRNA methyltransferase B [Bacillus amyloliquefaciens TA208]
gi|384164123|ref|YP_005545502.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus
amyloliquefaciens LL3]
gi|384168489|ref|YP_005549867.1| 16S rRNA methyltransferase B [Bacillus amyloliquefaciens XH7]
gi|307606401|emb|CBI42772.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus
amyloliquefaciens DSM 7]
gi|328553530|gb|AEB24022.1| 16S rRNA methyltransferase B [Bacillus amyloliquefaciens TA208]
gi|328911678|gb|AEB63274.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus
amyloliquefaciens LL3]
gi|341827768|gb|AEK89019.1| 16S rRNA methyltransferase B [Bacillus amyloliquefaciens XH7]
Length = 447
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 123/247 (49%), Gaps = 38/247 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L LD +PG+ VLD CAAPG K HIA LM + G+L +LD + +V ++E
Sbjct: 235 IQDESSMLVARALDPKPGETVLDACAAPGGKSAHIAELMKNEGSLTSLDLHRHKVKLIQE 294
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
++L L+ I D+ + + E FDRIL+DAPCSGFG ++P
Sbjct: 295 GAERLGLTIIDAQTMDARKAGDA---------FGAERFDRILVDAPCSGFGVIRRKPDM- 344
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ + + + IQ +L+ + PL+KK G LVY TC++ ENE
Sbjct: 345 ---KYTKTPEDSRRLSEIQLGILREI-----------APLVKKGGTLVYSTCTMDRTENE 390
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
V+ + HPE E P L ++ K L + + +Q ++P TD GFF
Sbjct: 391 EVMHAFIQEHPEFE-----PDLSLE----KRLPEKARPFVQDGSLQILPHYFGTD--GFF 439
Query: 306 ICKLRKK 312
I +RKK
Sbjct: 440 ISSMRKK 446
>gi|419823924|ref|ZP_14347457.1| 16S rRNA methyltransferase B [Bacillus atrophaeus C89]
gi|388471961|gb|EIM08751.1| 16S rRNA methyltransferase B [Bacillus atrophaeus C89]
Length = 447
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 127/248 (51%), Gaps = 40/248 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L + G+ +LD CAAPG K THIA M + G++++LD + +V ++E
Sbjct: 235 IQDESSMLVARALGPEAGETILDACAAPGGKSTHIAERMGNEGSVLSLDLHEHKVKLIKE 294
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP-MF 184
+L L+ I+ D+ + + + Q + FDRIL+DAPCSGFG ++P M
Sbjct: 295 AANRLGLTIIKPEAMDARKASEA---------FQDDEFDRILVDAPCSGFGVIRRKPDMK 345
Query: 185 YNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
Y+ N + A IQ +L+ + PL+KK G LVY TC++ EN
Sbjct: 346 YSKNP-----EDSARLAKIQLSILREI-----------APLVKKGGTLVYSTCTMDRTEN 389
Query: 245 EAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
E VI + HPE E P L ++ K L + + ++ ++P TD GF
Sbjct: 390 EEVIHAFIQEHPEFE-----PDLSLE----KRLPEKARPFVRGGSLQILPHYFGTD--GF 438
Query: 305 FICKLRKK 312
FIC +RKK
Sbjct: 439 FICSMRKK 446
>gi|311068095|ref|YP_003973018.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus atrophaeus
1942]
gi|310868612|gb|ADP32087.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus atrophaeus
1942]
Length = 447
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 127/248 (51%), Gaps = 40/248 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L + G+ +LD CAAPG K THIA M + G++++LD + +V ++E
Sbjct: 235 IQDESSMLVARALGPEAGETILDACAAPGGKSTHIAERMGNEGSVLSLDLHEHKVKLIKE 294
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP-MF 184
+L L+ I+ D+ + + + Q + FDRIL+DAPCSGFG ++P M
Sbjct: 295 AANRLGLTIIKPEAMDARKASEA---------FQDDEFDRILVDAPCSGFGVIRRKPDMK 345
Query: 185 YNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
Y+ N + A IQ +L+ + PL+KK G LVY TC++ EN
Sbjct: 346 YSKNP-----EDSARLAKIQLSILREI-----------APLVKKGGTLVYSTCTMDRTEN 389
Query: 245 EAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
E VI + HPE E P L ++ K L + + ++ ++P TD GF
Sbjct: 390 EEVIHAFIQEHPEFE-----PDLSLE----KRLPEKARPFVRGGSLQILPHYFGTD--GF 438
Query: 305 FICKLRKK 312
FIC +RKK
Sbjct: 439 FICSMRKK 446
>gi|86609413|ref|YP_478175.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86557955|gb|ABD02912.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 457
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 102/332 (30%), Positives = 144/332 (43%), Gaps = 69/332 (20%)
Query: 10 CLWLDRAGFVSVLRLPA--RQRPSLSIYCYALDILFRGVAVEITNV------LSQVPN-V 60
LW +R G V +L A Q P L + L V + +S+VP +
Sbjct: 164 SLWWERLGPVETEQLCAWFNQPPHLDLRVNPLRADVNKVIQALAAAGIPALPISEVPGAL 223
Query: 61 ALDSSMGILQNLPSILAG-------------HYLDVQPGQKVLDMCAAPGNKLTHIALLM 107
L G + LP G H+LD QPG++V+D CAAPG K T IA M
Sbjct: 224 RLQDHAGDITALPGFAQGWWSVQDASAQQVVHWLDPQPGERVIDCCAAPGGKTTQIAQHM 283
Query: 108 NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD-------STRINTSSQIDIERMK 160
D G + ALD+ R+ +LEE ++L LSSI+ D + R++ + + +
Sbjct: 284 QDRGEIWALDRHPHRLRRLEENRQRLGLSSIRPLAIDLLSLSAAADRVSGTESLPPAPLP 343
Query: 161 LQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDW 220
+S DR+LLDAPCSG G +A + ++I A++Q +LLQ R+
Sbjct: 344 -PWQSADRVLLDAPCSGLGTLHRHADAR-WRQTPERIPELAHLQAQLLQVAARW------ 395
Query: 221 QGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAE 280
LK G+LVY TC+L ENE +I L HP + AE
Sbjct: 396 -----LKPGGVLVYATCTLHPAENEEIIQAFLDSHP-------------------NWAAE 431
Query: 281 DQAVMQRFGPPLIPTDRNTDTIGFFICKLRKK 312
G PL+ D GFFI +LR+
Sbjct: 432 --------GDPLLIWPHRQDRDGFFIQRLRRS 455
>gi|70985320|ref|XP_748166.1| nucleolar RNA methyltransferase (Nop2) [Aspergillus fumigatus
Af293]
gi|66845794|gb|EAL86128.1| nucleolar RNA methyltransferase (Nop2), putative [Aspergillus
fumigatus Af293]
gi|159125911|gb|EDP51027.1| nucleolar RNA methyltransferase (Nop2), putative [Aspergillus
fumigatus A1163]
Length = 751
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 103/308 (33%), Positives = 139/308 (45%), Gaps = 72/308 (23%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +S++ L P LAGHY L QP +
Sbjct: 324 LINRGVVLEPVGKWSKVGLQVFESAV-PLGATPEYLAGHYILQAASSFLPVMALAPQPNE 382
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM AAPG K T+I+ LM +TG +IA D SKPR L I +L + D+
Sbjct: 383 RVLDMAAAPGGKTTYISALMRNTGCVIANDASKPRAKGLIGNIHRLGCKNTIVTNLDA-- 440
Query: 148 INTSSQIDIERMKLQKE--SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYAN--- 202
R K FDR+LLDAPC+G G ++ D +K+ N
Sbjct: 441 ----------RTAFPKALGGFDRVLLDAPCTGTG----------VISKDPSVKTSKNERD 480
Query: 203 ------IQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHP 256
+Q+ LL A V G G +VY TCS++VEENEAV+ + L + P
Sbjct: 481 FLAIPHMQRNLLLAAIDSVDHASKTG-------GYIVYSTCSVTVEENEAVVQYALRKRP 533
Query: 257 EVELVQT-LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKL 309
V+LV T L G G + ++F P + T R N D GFF+CKL
Sbjct: 534 NVKLVDTGLGDFGSPGFT--------SYMGKKFDPKMTLTRRYFPHRENVD--GFFVCKL 583
Query: 310 RKKYGEAP 317
KK G P
Sbjct: 584 -KKTGPTP 590
>gi|358368159|dbj|GAA84776.1| nucleolar RNA methyltransferase [Aspergillus kawachii IFO 4308]
Length = 758
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 99/302 (32%), Positives = 139/302 (46%), Gaps = 71/302 (23%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +S++ L P LAGHY L QP +
Sbjct: 314 LINRGVVLEPVGKWSKVGLQVFESAV-PLGATPEYLAGHYIIQAASSFLPVMALAPQPNE 372
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM +APG K T+I+ LM +TG +IA D SKPR L I +L + D+
Sbjct: 373 RVLDMASAPGGKTTYISALMRNTGCVIANDASKPRAKGLIGNIHRLGCKNTIVTNMDA-- 430
Query: 148 INTSSQIDIERMKLQKE--SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYAN--- 202
R K FDR+LLDAPC+G G ++ D +K+ N
Sbjct: 431 ----------RTAFPKAMGGFDRVLLDAPCTGTG----------VISKDPGVKTSKNERD 470
Query: 203 ------IQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHP 256
+Q++LL A V G G +VY TCS++VEENEAV+ ++L + P
Sbjct: 471 FLAIPHMQRQLLLAAIDSVDHASKTG-------GYIVYSTCSVTVEENEAVVQYVLRKRP 523
Query: 257 EVELVQT-LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKL 309
V+LV T L G G+ + + F P + T R N D GFF+CKL
Sbjct: 524 NVKLVDTGLGDFGSPGMT--------SYMGKHFDPKMTLTRRYFPHRENVD--GFFVCKL 573
Query: 310 RK 311
+K
Sbjct: 574 KK 575
>gi|328869535|gb|EGG17913.1| NOL1/NOP2/Sun family protein [Dictyostelium fasciculatum]
Length = 507
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 94/284 (33%), Positives = 145/284 (51%), Gaps = 48/284 (16%)
Query: 45 GVAVEITNVLSQVP--NVALDSSMGILQNLPSILAGHYLDVQPGQK------VLDMCAAP 96
GV +++T + P N L + LQ+LPSIL +D+ P Q+ +LDMCAAP
Sbjct: 248 GVGIKMTERIWDCPPLNGVLTDKL-FLQHLPSILTVFQMDLLPSQREKRSFNILDMCAAP 306
Query: 97 GNKLTHIALLMNDTG---TLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQ 153
G K T IA L+ + G + A+DK+K + + + + ++ + + R S +
Sbjct: 307 GGKTTLIASLVKNNGLGDKITAIDKNKKKAKMVSDLCR---VNGFDENGLVTVRAGDSKK 363
Query: 154 IDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYR 213
+ IE + ++ESFDRILLD PCSG G RP F A ++LD A +Q+ L+ A
Sbjct: 364 LLIEGV-FKEESFDRILLDGPCSGLGTRPRFDEATLLIDLDNS----ACLQRVLIDAA-- 416
Query: 214 FVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQL------ 267
+ LL GILVY TC+++ ENE + ++L + +Q +PQ
Sbjct: 417 ---------VKLLAPGGILVYSTCTINPCENEENVKYLLDNYG--SFMQLVPQTGHIGDP 465
Query: 268 GMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
G+ G+ ++L ++QRF P N +TIGFFI K +K
Sbjct: 466 GLPGILPENL----SPLVQRFDP-----STNHETIGFFISKFKK 500
>gi|55732314|emb|CAH92860.1| hypothetical protein [Pongo abelii]
Length = 357
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 68/145 (46%), Positives = 88/145 (60%), Gaps = 6/145 (4%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
LQNLPS L H L+ QPG+K+LD+CAAPG K THIA LM+D G +IALDK +V K++
Sbjct: 217 FLQNLPSALVTHVLNPQPGEKILDLCAAPGGKTTHIAALMHDQGEVIALDKIFNKVEKIK 276
Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDIERMK--LQKESFDRILLDAPCSGFGQRPMFY 185
+ L L+SI+ +D T+ ++ ESFDRILLDAPCSG GQRP
Sbjct: 277 QNALLLGLNSIRAFCFDGTKAVKLDMVEDTEGDPPFLPESFDRILLDAPCSGMGQRPNMA 336
Query: 186 NANSFLNLDKKIKSYANIQKKLLQA 210
S K++ SY +Q+KL A
Sbjct: 337 CTWSL----KEVASYQPLQRKLFTA 357
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 308 KLRKKY-GEAPEIYIHPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFA 366
+L+K++ G + I HP L D ++I P++ +++ + IV C AVLRGA V+A
Sbjct: 74 ELQKQFNGLSVPILQHPDLQDVLLI-PVIGPRKNIKKQQCEAIVGAQCGNAVLRGAHVYA 132
Query: 367 PGVLA 371
PG+++
Sbjct: 133 PGIVS 137
>gi|399048081|ref|ZP_10739811.1| ribosomal RNA small subunit methyltransferase RsmB [Brevibacillus
sp. CF112]
gi|398053995|gb|EJL46141.1| ribosomal RNA small subunit methyltransferase RsmB [Brevibacillus
sp. CF112]
Length = 448
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 87/249 (34%), Positives = 132/249 (53%), Gaps = 41/249 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L +PG +VLD CAAPG K THIA LM + G ++A D + + +
Sbjct: 235 IQDESSMLVAPALAAKPGMRVLDACAAPGGKTTHIAELMENRGHIVACDLHPHKRDLIAQ 294
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP-MF 184
T K+L +S I+ TS +D+ L +FDRILLDAPCSGFG ++P +
Sbjct: 295 TAKRLGISIIEP--------ITSDALDLPDRGLG--TFDRILLDAPCSGFGVIRRKPDLK 344
Query: 185 YNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
+N + +++ A +Q +LL+A+ P+L DG+LVY TC++ EEN
Sbjct: 345 WNKTP-----EDVRAIAQLQYELLKAL-----------APMLAADGVLVYSTCTIEPEEN 388
Query: 245 EAVIAWILHRHPEVELVQTLPQ-LGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIG 303
+ ++ + HPE L +TL L AH D E A +Q ++P +D G
Sbjct: 389 QKIVQRFVKEHPEFVLDETLAHDLPEAARAHVD---ETGACVQ-----ILPHHFESD--G 438
Query: 304 FFICKLRKK 312
FFI +L++K
Sbjct: 439 FFIARLKRK 447
>gi|395333608|gb|EJF65985.1| NOL1/NOP2/sun family RNA met [Dichomitus squalens LYAD-421 SS1]
Length = 718
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 91/288 (31%), Positives = 140/288 (48%), Gaps = 47/288 (16%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E + V +SS+ I P LAGHY L QPG+
Sbjct: 381 LINRGVNLEPIGKWTNVGLQVFESSVPIGAT-PEYLAGHYMLQAASSFLPVIALSPQPGE 439
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM +APG K TH+A LM +TG + A D +K RV L + +L ++ YD
Sbjct: 440 RVLDMASAPGGKTTHMAALMQNTGVVFANDANKARVKSLTANVHRLGCKNVVVCSYDGRE 499
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYA---NIQ 204
FDR+LLDAPCSG G + ++ + +K + +A ++Q
Sbjct: 500 FPKVIG-----------GFDRVLLDAPCSGTG----VISKDASVKTNKSERDFALLSHLQ 544
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL 264
K+L+ V+ P K G LVY TCS++V+ENEAV+ + L + P V+LV T
Sbjct: 545 KQLILCAIDSVA-------PDSKTGGYLVYSTCSVTVDENEAVVDYALRKRPNVKLVDTG 597
Query: 265 PQLGMKG-LAHKDLEAEDQ-AVMQRFGPPLIPTDRNTDTIGFFICKLR 310
+ G G +++ D+ ++ +RF P + D GF++ K +
Sbjct: 598 LEFGRPGYTSYRGKTFSDKLSLTRRFYPHVHNMD------GFYVAKFK 639
>gi|154685990|ref|YP_001421151.1| RsmB [Bacillus amyloliquefaciens FZB42]
gi|154351841|gb|ABS73920.1| RsmB [Bacillus amyloliquefaciens FZB42]
Length = 447
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 81/247 (32%), Positives = 123/247 (49%), Gaps = 38/247 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L LD +PG+ VLD CAAPG K HIA LM + G+L +LD + +V ++E
Sbjct: 235 IQDESSMLVARALDPKPGETVLDACAAPGGKSAHIAELMENEGSLTSLDLHRHKVKLIKE 294
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
++L L+ I D+ + + E FDR+L+DAPCSGFG ++P
Sbjct: 295 GAERLGLTIIDAQTMDARKAGEA---------FGAERFDRVLVDAPCSGFGVIRRKPDM- 344
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ + + + IQ +L+ + PL+KK G LVY TC++ ENE
Sbjct: 345 ---KYTKTPEDSRRLSEIQLGILREI-----------APLVKKGGTLVYSTCTMDRTENE 390
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
V+ + HPE E P L ++ K L + + +Q ++P TD GFF
Sbjct: 391 EVMHAFIQEHPEFE-----PDLSLE----KRLPEKARPFVQDGSLQILPHYFGTD--GFF 439
Query: 306 ICKLRKK 312
I +RKK
Sbjct: 440 ISSMRKK 446
>gi|354582479|ref|ZP_09001381.1| sun protein [Paenibacillus lactis 154]
gi|353199878|gb|EHB65340.1| sun protein [Paenibacillus lactis 154]
Length = 454
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 126/247 (51%), Gaps = 39/247 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L + +PG +VLD CAAPG K H+ LM D G+++A D + + +
Sbjct: 244 IQDESSMLVAEAVGPEPGMRVLDCCAAPGGKSAHMGELMKDEGSIVANDIHSHKGKLIAD 303
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
+L L I+T D+ + + + SFDRILLDAPCSG G ++P
Sbjct: 304 QAARLGLDCIRTVTGDAIELPA---------RFEPASFDRILLDAPCSGLGVIRRKPDL- 353
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ ++ I+ A +Q +LL +V LL+ G+LVY TC++ +ENE
Sbjct: 354 ---KWGKTEEDIREIAALQSRLLDSVS-----------ALLRPGGVLVYSTCTIEPQENE 399
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
V+ ++RHPE EL +T +K D A+++ G ++P ++D GF+
Sbjct: 400 GVVTSFVNRHPEFELDETGSLSRLK----------DNALVRGGGIQILPQHYHSD--GFY 447
Query: 306 ICKLRKK 312
I +LR++
Sbjct: 448 IARLRRR 454
>gi|225554205|gb|EEH02543.1| nucleolar protein NOP2 [Ajellomyces capsulatus G186AR]
Length = 704
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 100/297 (33%), Positives = 143/297 (48%), Gaps = 50/297 (16%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +S++ L P LAGHY L QP +
Sbjct: 311 LINRGVVLEPVGKWSKVGLQIFESAI-PLGATPEYLAGHYILQAASSFLPVMALAPQPNE 369
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM AAPG K T+I+ LM +TG ++A D SKPR L I +L + D+
Sbjct: 370 RVLDMAAAPGGKTTYISALMRNTGCVLANDASKPRAKGLIGNIHRLGCKNTIISNLDA-- 427
Query: 148 INTSSQIDIERMKLQK--ESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYAN 202
R K FDR+LLDAPCSG G + P + S ++ + +
Sbjct: 428 ----------RQAFPKILGGFDRVLLDAPCSGTGVISKDPNIKTSKS----ERDFLALPH 473
Query: 203 IQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQ 262
+QK+LL A + L K G +VY TCS++VEENEAV+ + L P V++V
Sbjct: 474 MQKQLLLAAIDSTNH-------LSKTGGYIVYSTCSVTVEENEAVVQYALRNRPNVKIVD 526
Query: 263 T-LPQLGMKGL-AHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKKYGEAP 317
T L G G ++ + +D+ + R P N D GF++CKL KK G +P
Sbjct: 527 TGLGNFGTPGFKSYMGKKFDDKMSLSRR---YFPHKENVD--GFYVCKL-KKTGPSP 577
>gi|255657701|ref|ZP_05403110.1| ribosomal RNA small subunit methyltransferase B [Mitsuokella
multacida DSM 20544]
gi|260849889|gb|EEX69896.1| ribosomal RNA small subunit methyltransferase B [Mitsuokella
multacida DSM 20544]
Length = 452
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 127/244 (52%), Gaps = 37/244 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L H + QPG+ ++D CAAPG K TH+A LM+D G ++A D ++ ++EE
Sbjct: 237 VQDESSMLVAHVVGPQPGEFIIDCCAAPGGKTTHMAALMHDEGRILAGDIYSHKLQRIEE 296
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESF-DRILLDAPCSGFGQRPMFYNA 187
+L + SI+T +ID + Q E+ DR+L+DAPCSG G +A
Sbjct: 297 NAARLGIQSIET-----------EEIDAREIGEQYEAMADRVLVDAPCSGLGVLRRKPDA 345
Query: 188 NSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
+ ++I + ++Q +L++ R V K G+LVY TC++ + EN+ V
Sbjct: 346 R-WRKTQQEIAALPDLQLAILESAARAV-----------KPGGVLVYSTCTIELAENQGV 393
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
++ L +HPE EL T L + AE + V L+P TD GFFIC
Sbjct: 394 VSRFLEQHPEFELETTGHYLPL-----PTKHAESKMVQ------LLPHIDGTD--GFFIC 440
Query: 308 KLRK 311
+++K
Sbjct: 441 RMKK 444
>gi|170087176|ref|XP_001874811.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650011|gb|EDR14252.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 561
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 136/289 (47%), Gaps = 55/289 (19%)
Query: 44 RGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQKVL 90
RGV +E + V +SS+ I P LAGHY L QP ++VL
Sbjct: 239 RGVNLEPIGKWTNVGLQVFESSVPIGAT-PEYLAGHYMLQAASSLLPVIALSPQPNERVL 297
Query: 91 DMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINT 150
DM +APG K THIA L+ +TG + A D +K R L + +L ++ YD
Sbjct: 298 DMASAPGGKTTHIAALLQNTGVVFANDANKARTKSLTANVHRLGCKNVVVCSYDGR---- 353
Query: 151 SSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY---ANIQKKL 207
E K+ FDR+LLDAPCSG G + +S + L+K + + +++QK+L
Sbjct: 354 ------EFPKVMG-GFDRVLLDAPCSGTG----VISKDSSVKLNKSDRDFTLLSHLQKQL 402
Query: 208 LQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQL 267
+ VS P K G LVY TCS++V+ENEAV+ + L + P V+LV T
Sbjct: 403 ILCAIDSVS-------PESKTGGYLVYSTCSVTVDENEAVVDYALRKRPNVKLVDTGLSF 455
Query: 268 GMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLR 310
G +G + + F P L T R N D GFF+ K +
Sbjct: 456 GREGFT--------KYRGKTFNPSLNLTRRFYPHVHNMD--GFFVSKFK 494
>gi|350633373|gb|EHA21738.1| hypothetical protein ASPNIDRAFT_210766 [Aspergillus niger ATCC
1015]
Length = 681
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 99/302 (32%), Positives = 139/302 (46%), Gaps = 71/302 (23%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +S++ L P LAGHY L QP +
Sbjct: 314 LINRGVVLEPVGKWSKVGLQVFESAV-PLGATPEYLAGHYIIQAASSFLPVMALAPQPNE 372
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM +APG K T+I+ LM +TG +IA D SKPR L I +L + D+
Sbjct: 373 RVLDMASAPGGKTTYISALMRNTGCVIANDASKPRAKGLIGNIHRLGCKNTIVTNMDA-- 430
Query: 148 INTSSQIDIERMKLQKE--SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYAN--- 202
R K FDR+LLDAPC+G G ++ D +K+ N
Sbjct: 431 ----------RTAFPKAMGGFDRVLLDAPCTGTG----------VISKDPGVKTSKNERD 470
Query: 203 ------IQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHP 256
+Q++LL A V G G +VY TCS++VEENEAV+ ++L + P
Sbjct: 471 FLAIPHMQRQLLLAAIDSVDHASKTG-------GYVVYSTCSVTVEENEAVVQYVLRKRP 523
Query: 257 EVELVQT-LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKL 309
V+LV T L G G+ + + F P + T R N D GFF+CKL
Sbjct: 524 NVKLVDTGLGDFGSPGMT--------SYMGKHFDPKMTLTRRYFPHRENVD--GFFVCKL 573
Query: 310 RK 311
+K
Sbjct: 574 KK 575
>gi|71404146|ref|XP_804805.1| nucleolar protein [Trypanosoma cruzi strain CL Brener]
gi|70867957|gb|EAN82954.1| nucleolar protein, putative [Trypanosoma cruzi]
Length = 328
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 99/290 (34%), Positives = 139/290 (47%), Gaps = 54/290 (18%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
+L RG+ VE S+V +S++ I + LAG Y L Q +
Sbjct: 2 LLKRGMHVEPLEKWSKVGLQVFESNVPIAGTI-EYLAGQYMLQSAVSFLPVMALAPQEKE 60
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM AAPG K T+IA LM +TG L A D S+PR L +++L +++ YD
Sbjct: 61 RVLDMAAAPGGKTTYIAQLMKNTGVLFANDVSEPRTKALNANLQRLGVTNTVVTNYDGAG 120
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKS---YANIQ 204
N K+ K +FDR+LLDAPC+G G ++ DK IKS Y ++Q
Sbjct: 121 YN----------KIMK-NFDRVLLDAPCTGSG----------IISRDKSIKSSKHYEDVQ 159
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL 264
+ Q +S D +K G +VY TCS VEENEAV+ + + R VE+V+
Sbjct: 160 RASQQQRTLLLSAID-----AVKVGGYVVYSTCSFLVEENEAVVEFAVRRR-HVEIVEMG 213
Query: 265 PQLGMKGLA---HKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
G GL H + E +RF P + D GFF+CKL+K
Sbjct: 214 LPFGRPGLTKYRHHRFQ-EKMQCSRRFFPHVHNMD------GFFVCKLKK 256
>gi|145251900|ref|XP_001397463.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Aspergillus niger CBS 513.88]
gi|134083004|emb|CAK42767.1| unnamed protein product [Aspergillus niger]
Length = 762
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 99/302 (32%), Positives = 139/302 (46%), Gaps = 71/302 (23%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +S++ L P LAGHY L QP +
Sbjct: 314 LINRGVVLEPVGKWSKVGLQVFESAV-PLGATPEYLAGHYIIQAASSFLPVMALAPQPNE 372
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM +APG K T+I+ LM +TG +IA D SKPR L I +L + D+
Sbjct: 373 RVLDMASAPGGKTTYISALMRNTGCVIANDASKPRAKGLIGNIHRLGCKNTIVTNMDA-- 430
Query: 148 INTSSQIDIERMKLQKE--SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYAN--- 202
R K FDR+LLDAPC+G G ++ D +K+ N
Sbjct: 431 ----------RTAFPKAMGGFDRVLLDAPCTGTG----------VISKDPGVKTSKNERD 470
Query: 203 ------IQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHP 256
+Q++LL A V G G +VY TCS++VEENEAV+ ++L + P
Sbjct: 471 FLAIPHMQRQLLLAAIDSVDHASKTG-------GYVVYSTCSVTVEENEAVVQYVLRKRP 523
Query: 257 EVELVQT-LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKL 309
V+LV T L G G+ + + F P + T R N D GFF+CKL
Sbjct: 524 NVKLVDTGLGDFGSPGMT--------SYMGKHFDPKMTLTRRYFPHRENVD--GFFVCKL 573
Query: 310 RK 311
+K
Sbjct: 574 KK 575
>gi|67902172|ref|XP_681342.1| hypothetical protein AN8073.2 [Aspergillus nidulans FGSC A4]
gi|40740505|gb|EAA59695.1| hypothetical protein AN8073.2 [Aspergillus nidulans FGSC A4]
gi|259480830|tpe|CBF73828.1| TPA: nucleolar RNA methyltransferase (Nop2), putative
(AFU_orthologue; AFUA_5G01760) [Aspergillus nidulans
FGSC A4]
Length = 788
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 101/305 (33%), Positives = 143/305 (46%), Gaps = 66/305 (21%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +S++ L P LAGHY L Q +
Sbjct: 333 LINRGVVLEPVGKWSKVGLQVFESAV-PLGATPEYLAGHYILQAASSFLPVMALAPQENE 391
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
++LDM +APG K T+I+ LM +TG +IA D SKPR L I +L + D+
Sbjct: 392 RILDMASAPGGKTTYISALMRNTGCVIANDASKPRAKGLIGNIHRLGCKNTIVTNLDA-- 449
Query: 148 INTSSQIDIERMKLQKE--SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYAN--- 202
R K FDR+LLDAPC+G G + D +K+ N
Sbjct: 450 ----------RTAFPKAMGGFDRVLLDAPCTGTG----------VIAKDPSVKTNKNERD 489
Query: 203 ------IQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHP 256
+Q++LL A V+ G G +VY TCS++VEENEAV+ ++L + P
Sbjct: 490 FLAIPHMQRQLLLAAIDSVNHASKTG-------GYIVYSTCSVTVEENEAVVQYVLKKRP 542
Query: 257 EVELVQT-LPQLGMKGLAH---KDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKK 312
V+LV+T L G G H K +A+ + +R+ P N D GFF+CKL KK
Sbjct: 543 NVKLVETGLGDFGSPGFTHYMGKHFDAK-MTMTRRY----FPHRENVD--GFFVCKL-KK 594
Query: 313 YGEAP 317
G P
Sbjct: 595 IGPTP 599
>gi|428781149|ref|YP_007172935.1| ribosomal RNA small subunit methyltransferase RsmB
[Dactylococcopsis salina PCC 8305]
gi|428695428|gb|AFZ51578.1| ribosomal RNA small subunit methyltransferase RsmB
[Dactylococcopsis salina PCC 8305]
Length = 445
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 99/323 (30%), Positives = 149/323 (46%), Gaps = 57/323 (17%)
Query: 11 LWLDRAGFVSVLRLPA--RQRPSLSIYCYALDILFRGV--AVEITNV----LSQVPNVAL 62
LW D G + +L A Q P++ + L++ V A N+ LS + L
Sbjct: 159 LWRDEWGQETAEKLAAWFNQSPTIDLRINPLNVSKEAVEKAFMEANINYEFLSLPYGLRL 218
Query: 63 DSSMGILQNLPSILAGHY-------------LDVQPGQKVLDMCAAPGNKLTHIALLMND 109
S +G +Q LP G + L+ QPG+ ++D CAAPG K THIA LM D
Sbjct: 219 TSRVGNIQQLPGFSEGWWTVQDFSAQLVSYLLNPQPGETIIDACAAPGGKTTHIAELMGD 278
Query: 110 TGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRI 169
G + ALD++ R+ K+ ++LQ SI+T V D+ MK +++ +R+
Sbjct: 279 DGLIWALDRASSRLKKVISNAERLQHKSIKTCV-----------ADVREMKQFQQAANRV 327
Query: 170 LLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKD 229
L+DAPCSG G + + + + + +Q+++L +V K
Sbjct: 328 LVDAPCSGLGTLHRRTDLR-WRQTPENLVELSQLQQEILTTAATWV-----------KPK 375
Query: 230 GILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFG 289
G LVY TC+L+ ENE VI L HP+ E+ L K L V G
Sbjct: 376 GTLVYATCTLNPLENEDVIQTFLSNHPQWEI-----DLPPDNFPSKSL------VSASGG 424
Query: 290 PPLIPTDRNTDTIGFFICKLRKK 312
LIPT+ N+D GFF+ KL+ +
Sbjct: 425 IKLIPTEHNSD--GFFMVKLKHR 445
>gi|126695788|ref|YP_001090674.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9301]
gi|126542831|gb|ABO17073.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9301]
Length = 438
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/229 (36%), Positives = 124/229 (54%), Gaps = 37/229 (16%)
Query: 60 VALDSSMGILQNLPSILAGHY-------------LDVQPGQKVLDMCAAPGNKLTHIALL 106
+ L S+ ++NLP G + L+ + G+K+LD CAAPG+K TH+A L
Sbjct: 218 ITLKSNPRSIKNLPGYSDGLWTIQDRSSQWIAPLLNPKQGEKILDACAAPGSKSTHLAEL 277
Query: 107 MNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESF 166
ND+ +IA+D+S R+ L+ +++L L S+ T D+T + IE F
Sbjct: 278 TNDSSEIIAVDRSAKRLKILQSNLERLNLKSVNTLKADATSL-------IELNPKFISYF 330
Query: 167 DRILLDAPCSGFGQRPMFYNANSFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPL 225
D+ILLDAPCSG G + N +S +L K KIKS +Q+KLL +++ PL
Sbjct: 331 DKILLDAPCSGIGT--LSRNPDSRWSLSKEKIKSLTLLQEKLLDSIF-----------PL 377
Query: 226 LKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV---QTLPQLGMKG 271
LKKDG LVY TC++ +EN +I + ++ ++LV Q LP L G
Sbjct: 378 LKKDGTLVYSTCTICPDENNLLIERFIEKNKTLKLVSEKQILPSLDYPG 426
>gi|398304097|ref|ZP_10507683.1| 16S rRNA methyltransferase B [Bacillus vallismortis DV1-F-3]
Length = 447
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 124/248 (50%), Gaps = 40/248 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L LD +PG+ VLD CAAPG K HI LM + G++ +LD K +V ++E
Sbjct: 235 IQDESSMLVARALDPKPGETVLDACAAPGGKSAHIGELMENKGSISSLDLHKHKVKLIKE 294
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP-MF 184
+L L+ I D+ + + + E FDR+L+DAPCSGFG ++P M
Sbjct: 295 AADRLGLTIIDAQEMDARKAGET---------FENEQFDRVLVDAPCSGFGVIRRKPDMK 345
Query: 185 YNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
Y D + A IQ +L+ + PL+KK G LVY TC++ EN
Sbjct: 346 YTKKP----DDSAR-LAEIQLSILREI-----------APLVKKGGTLVYSTCTMDRTEN 389
Query: 245 EAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
E VI + HP+ E P L ++ K L + + ++ ++P TD GF
Sbjct: 390 EEVIHAFIQEHPDFE-----PDLSLE----KRLPEKARPFVRDGRVQILPHYFGTD--GF 438
Query: 305 FICKLRKK 312
FIC +RKK
Sbjct: 439 FICSMRKK 446
>gi|71408722|ref|XP_806747.1| nucleolar protein [Trypanosoma cruzi strain CL Brener]
gi|70870582|gb|EAN84896.1| nucleolar protein, putative [Trypanosoma cruzi]
Length = 538
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 99/290 (34%), Positives = 139/290 (47%), Gaps = 54/290 (18%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
+L RG+ VE S+V +S++ I + LAG Y L Q +
Sbjct: 212 LLKRGMHVEPLEKWSKVGLQVFESNVPIAGTI-EYLAGQYMLQSAVSFLPVMALAPQEKE 270
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM AAPG K T+IA LM +TG L A D S+PR L +++L +++ YD
Sbjct: 271 RVLDMAAAPGGKTTYIAQLMKNTGVLFANDVSEPRTKALNANLQRLGVTNTVVTNYDGAG 330
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKS---YANIQ 204
N K+ K +FDR+LLDAPC+G G ++ DK IKS Y ++Q
Sbjct: 331 YN----------KIMK-NFDRVLLDAPCTGSG----------IISRDKSIKSSKHYEDVQ 369
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL 264
+ Q +S D +K G +VY TCS VEENEAV+ + + R VE+V+
Sbjct: 370 RASQQQRTLLLSAIDA-----VKVGGYVVYSTCSFLVEENEAVVEFAVRRR-HVEIVEMG 423
Query: 265 PQLGMKGLA---HKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
G GL H + E +RF P + D GFF+CKL+K
Sbjct: 424 LPFGRPGLTKYRHHRFQ-EKMQCSRRFFPHVHNMD------GFFVCKLKK 466
>gi|186684748|ref|YP_001867944.1| sun protein [Nostoc punctiforme PCC 73102]
gi|186467200|gb|ACC83001.1| sun protein [Nostoc punctiforme PCC 73102]
Length = 487
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 105/193 (54%), Gaps = 25/193 (12%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ + L H LD QPG+ V+D+CAAPG K THIA LM D+G + A D++ R+ KL+E
Sbjct: 275 VQDASAQLVSHLLDPQPGEVVIDVCAAPGGKTTHIAELMADSGKIWACDRTASRLRKLQE 334
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
++L L SIQ + DS N + + DR+LLDAPCSG G M +A+
Sbjct: 335 NSQRLNLQSIQIYTGDSRHSNQF-----------QNTADRVLLDAPCSGLGT--MHRHAD 381
Query: 189 S-FLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
+ + + ++ + +QK+LL FV K G+LVY TC+L ENE V
Sbjct: 382 ARWRQTPESVRELSVLQKELLTHTSTFV-----------KAGGVLVYATCTLHPAENEEV 430
Query: 248 IAWILHRHPEVEL 260
I+ L P ++
Sbjct: 431 ISAFLAESPHWQI 443
>gi|402225311|gb|EJU05372.1| NOL1/NOP2/sun family RNA met [Dacryopinax sp. DJM-731 SS1]
Length = 573
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/288 (31%), Positives = 138/288 (47%), Gaps = 49/288 (17%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +SS+ I P LAGHY LD QPG+
Sbjct: 237 LINRGVNLEPIGKWSKVGLQVFESSVPIGAT-PEYLAGHYMLQAASSFLPVIALDPQPGE 295
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM +APG K T+I+ LM +TG + A D +K R L + +L ++ YD
Sbjct: 296 RVLDMASAPGGKTTYISALMQNTGVVFANDANKERTKGLTANVHRLGCRNVVVCNYDGR- 354
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY---ANIQ 204
E K+ FDR+LLDAPCSG G + ++ + +K + + +++Q
Sbjct: 355 ---------EFPKVMG-GFDRVLLDAPCSGTG----VISKDASVKQNKSARDFTLLSHLQ 400
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL 264
K+L+ V+ +VY TCS++V+ENE+VIA+ L + P V LV T
Sbjct: 401 KQLILCAIDSVT---------PSSSATVVYSTCSVTVDENESVIAYALRKRPHVRLVDTG 451
Query: 265 PQLGMKGLA--HKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLR 310
+ G +G E+ +RF P + D GFF+ KLR
Sbjct: 452 LEFGREGFKAFRGKTFGEEMGKTRRFYPHVNNMD------GFFVAKLR 493
>gi|157412841|ref|YP_001483707.1| Sun protein [Prochlorococcus marinus str. MIT 9215]
gi|157387416|gb|ABV50121.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9215]
Length = 438
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/229 (35%), Positives = 126/229 (55%), Gaps = 37/229 (16%)
Query: 60 VALDSSMGILQNLPSILAGHY-------------LDVQPGQKVLDMCAAPGNKLTHIALL 106
+ L S+ ++NLP G + L+ + G+K+LD CAAPG+K TH+A L
Sbjct: 218 ITLKSNPRSIKNLPGYSDGLWTIQDRSSQWIAPLLNPKEGEKILDACAAPGSKSTHLAEL 277
Query: 107 MNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESF 166
ND+ ++A+D+S+ R+ L+ + +L L S+ T D+T + IE F
Sbjct: 278 TNDSAEILAVDRSEKRLKILQSNLVRLNLKSVNTLKADATSL-------IELNPKFISYF 330
Query: 167 DRILLDAPCSGFGQRPMFYNANSFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPL 225
D+ILLDAPCSG G + N +S +L K KIKS +Q+KLL+ ++ PL
Sbjct: 331 DKILLDAPCSGIGT--LSRNPDSRWSLSKEKIKSLTLLQEKLLEKIF-----------PL 377
Query: 226 LKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV---QTLPQLGMKG 271
LKKDGI+VY TC++ +EN +I + ++ ++LV Q LP+L G
Sbjct: 378 LKKDGIMVYSTCTICPDENNLLIEKFIEKNKGLKLVSQKQILPRLDYPG 426
>gi|333978754|ref|YP_004516699.1| N utilization substance protein B [Desulfotomaculum kuznetsovii DSM
6115]
gi|333822235|gb|AEG14898.1| N utilization substance protein B-like protein [Desulfotomaculum
kuznetsovii DSM 6115]
Length = 453
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/254 (32%), Positives = 126/254 (49%), Gaps = 38/254 (14%)
Query: 62 LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKP 121
+ + ++Q+ SIL GH L PG +VLD AAPG K TH+A LM D G + ALD
Sbjct: 232 FEEGLFLVQDESSILVGHALSPLPGARVLDAAAAPGTKTTHLAQLMGDRGEITALDIHPH 291
Query: 122 RVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG-- 179
++ + ++L ++ ++ D+ ++ S+ +D ILLDAPCSG G
Sbjct: 292 KIKLIAANCRRLGITCVRPVEADARHLDQSTH----------HQWDFILLDAPCSGLGVL 341
Query: 180 -QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS 238
+RP + + I A +QK++L+ V R LK G+LVY TC+
Sbjct: 342 RRRP----DARWRKTEASIAEMAGLQKEMLEGVAR-----------CLKPGGVLVYSTCT 386
Query: 239 LSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRN 298
++ EEN + L+RHPE +L + L L GL ++Q + R L+P
Sbjct: 387 VTREENLGQVEDFLNRHPEFQL-EDLSTLLPAGL-------DEQGTLSRGYIQLLPHRHG 438
Query: 299 TDTIGFFICKLRKK 312
D GFF+ +LRK+
Sbjct: 439 MD--GFFMARLRKR 450
>gi|15644260|ref|NP_229312.1| sun protein [Thermotoga maritima MSB8]
gi|418045570|ref|ZP_12683665.1| sun protein [Thermotoga maritima MSB8]
gi|4982078|gb|AAD36579.1|AE001799_11 sun protein [Thermotoga maritima MSB8]
gi|351676455|gb|EHA59608.1| sun protein [Thermotoga maritima MSB8]
Length = 431
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 133/250 (53%), Gaps = 34/250 (13%)
Query: 62 LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKP 121
++ + +Q S L +++++PG +VLD CAAPG K T IA LM D G ++A+D S+
Sbjct: 214 INDGLASVQGESSQLVPFFMELRPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISRE 273
Query: 122 RVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQR 181
++ +E+ K+L+LSSI+T + D+ R+ Q ++FDR+L+DAPC+ G
Sbjct: 274 KIQLVEKHAKRLKLSSIETKIADAERLTEYVQ----------DTFDRVLVDAPCTSLGTA 323
Query: 182 PMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSV 241
+N + + ++ IQ +++Q WQ LL+K GIL+Y TC+++
Sbjct: 324 RNHPEVLRRVN-KEDFEKFSEIQLRMVQQA--------WQ---LLEKGGILLYSTCTVTK 371
Query: 242 EENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDT 301
EEN V+ ++ +VE++ ++ K+ E E + +G ++P + T
Sbjct: 372 EENTEVVKRFVYEQKDVEVIDIRDKM-------KEFEVE--GIWDGYGFLMLPDETIT-- 420
Query: 302 IGFFICKLRK 311
F+I LRK
Sbjct: 421 -PFYISVLRK 429
>gi|347750545|ref|YP_004858110.1| sun protein [Bacillus coagulans 36D1]
gi|347583063|gb|AEO99329.1| sun protein [Bacillus coagulans 36D1]
Length = 447
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 119/251 (47%), Gaps = 41/251 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+ + L +Q GQ++LD CAAPG K THIA + TG ++ALD +V ++E
Sbjct: 235 IQDESSMAVAYALCIQEGQRILDACAAPGGKTTHIAEKLEGTGEVVALDLHPHKVKLVQE 294
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
++L ++ DS + +K +FDRIL+DAPC+GFG ++P
Sbjct: 295 NAERLGTGQVEAIAMDSRDAGA---------RFEKNTFDRILVDAPCTGFGVLRRKPDIK 345
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
A + + I + +Q +L V LLK DGILV+ TC++ EENE
Sbjct: 346 YAKTVDD----IHALKQVQLSILSGVSE-----------LLKPDGILVFSTCTVDREENE 390
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
I L HPE E M+ D MQ F P D D GFF
Sbjct: 391 GTIETFLQEHPEFEPYPLHVPEAMESCV-------DGYRMQIF-----PQDFGGD--GFF 436
Query: 306 ICKLRKKYGEA 316
I +RKK G+A
Sbjct: 437 IASIRKKAGKA 447
>gi|443632757|ref|ZP_21116936.1| RNA-binding Sun protein [Bacillus subtilis subsp. inaquosorum KCTC
13429]
gi|443347580|gb|ELS61638.1| RNA-binding Sun protein [Bacillus subtilis subsp. inaquosorum KCTC
13429]
Length = 447
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 124/248 (50%), Gaps = 40/248 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L LD +PG+ VLD CAAPG K HI LM + G++ +LD K +V ++E
Sbjct: 235 IQDESSMLVARALDPKPGETVLDACAAPGGKSAHIGELMENKGSVTSLDLHKHKVKLIKE 294
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP-MF 184
+L L+ I+ D+ + + + FDRIL+DAPCSGFG ++P M
Sbjct: 295 AADRLGLTIIEAKTMDARKAGET---------FENGQFDRILVDAPCSGFGVIRRKPDMK 345
Query: 185 YNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
Y D + A IQ +L+ + PL+KK G LVY TC++ EN
Sbjct: 346 YTKKP----DDSAR-LAEIQLSILREI-----------APLVKKGGTLVYSTCTMDRTEN 389
Query: 245 EAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
E VI + HP+ E P L ++ K L + + ++ ++P TD GF
Sbjct: 390 EEVIHAFIQEHPDFE-----PDLSLE----KRLPEKARPFVRDGRVQILPHYFGTD--GF 438
Query: 305 FICKLRKK 312
FIC +RKK
Sbjct: 439 FICSMRKK 446
>gi|449547463|gb|EMD38431.1| hypothetical protein CERSUDRAFT_113588 [Ceriporiopsis subvermispora
B]
Length = 708
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 90/288 (31%), Positives = 140/288 (48%), Gaps = 47/288 (16%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E + V +SS+ I P LAGHY L QPG+
Sbjct: 375 LINRGVNLEPIGKWTNVGLQVFESSVPIGAT-PEYLAGHYMLQAASSFLPVIALGPQPGE 433
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM +APG K TH+A LM +TG + A D +K R L + +L ++ YD
Sbjct: 434 RVLDMASAPGGKTTHMAALMQNTGVVFANDATKARTKSLTANVHRLGCKNVVVCSYDGR- 492
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY---ANIQ 204
E K+ FDR+LLDAPCSG G + ++ + +K + + +++Q
Sbjct: 493 ---------EFPKVMG-GFDRVLLDAPCSGTG----VISKDASVKTNKSERDFTLLSHLQ 538
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL 264
K+L+ ++ P K G LVY TCS++V+ENEAV+ + L + P V+LV T
Sbjct: 539 KQLILCAIDSIT-------PDSKTGGYLVYSTCSVTVDENEAVVDYALRKRPNVKLVDTG 591
Query: 265 PQLGMKGLA--HKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLR 310
+ G+ G + E ++ +RF P + D GF++ K +
Sbjct: 592 LEFGVPGFTKYRGKVFNEKVSLTRRFYPHVHNMD------GFYVAKFK 633
>gi|238485520|ref|XP_002373998.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Aspergillus flavus NRRL3357]
gi|220698877|gb|EED55216.1| nucleolar RNA methyltransferase (Nop2), putative [Aspergillus
flavus NRRL3357]
Length = 751
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 98/298 (32%), Positives = 147/298 (49%), Gaps = 52/298 (17%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +S++ L P LAGHY L QP +
Sbjct: 317 LINRGVVLEPVGKWSKVGLQVFESAV-PLGATPEYLAGHYILQAASSFLPVMALAPQPNE 375
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL-SSIQTHVYDST 146
+VLDM +APG K T+I+ LM +TG +IA D SKPR L I +L +++ TH+ T
Sbjct: 376 RVLDMASAPGGKTTYISALMRNTGCVIANDASKPRAKGLIGNIHRLGCKNTLVTHLDART 435
Query: 147 RINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYANI 203
+ FDR+LLDAPC+G G + P + + ++ + ++
Sbjct: 436 AFPKAMG-----------GFDRVLLDAPCTGTGVISKDPAVKTSKT----ERDFLAIPHM 480
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
Q++LL A V G G +VY TCS++VEENEAV+ ++L + P V++V T
Sbjct: 481 QRQLLLAAIDSVDHSSKTG-------GYIVYSTCSVTVEENEAVVQYVLRKRPNVKIVDT 533
Query: 264 -LPQLGMKGLAH---KDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKKYGEAP 317
L G G K +A+ + +R+ P N D GF++CKL KK G +P
Sbjct: 534 GLGDFGSPGFKEYMGKHFDAK-MTMTRRY----FPHRENVD--GFYVCKL-KKTGPSP 583
>gi|240277116|gb|EER40626.1| nucleolar protein NOP2 [Ajellomyces capsulatus H143]
gi|325096756|gb|EGC50066.1| nucleolar protein NOP2 [Ajellomyces capsulatus H88]
Length = 670
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 97/291 (33%), Positives = 140/291 (48%), Gaps = 49/291 (16%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +S++ L P LAGHY L QP +
Sbjct: 312 LINRGVVLEPVGKWSKVGLQIFESAI-PLGATPEYLAGHYILQAASSFLPVMALAPQPNE 370
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM AAPG K T+I+ LM +TG ++A D SKPR L I +L + D+
Sbjct: 371 RVLDMAAAPGGKTTYISALMRNTGCVLANDASKPRAKGLIGNIHRLGCKNTIISNLDA-- 428
Query: 148 INTSSQIDIERMKLQK--ESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYAN 202
R K FDR+LLDAPCSG G + P + S ++ + +
Sbjct: 429 ----------RQAFPKILGGFDRVLLDAPCSGTGVISKDPNIKTSKS----ERDFLALPH 474
Query: 203 IQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQ 262
+QK+LL A + L K G +VY TCS++VEENEAV+ + L P V++V
Sbjct: 475 MQKQLLLAAIDSTNH-------LSKTGGYIVYSTCSVTVEENEAVVQYALRNRPNVKIVD 527
Query: 263 T-LPQLGMKGL-AHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
T L G G ++ + +D+ + R P N D GF++CKL+K
Sbjct: 528 TGLGNFGTPGFKSYMGKKFDDKMSLSRR---YFPHRENVD--GFYVCKLKK 573
>gi|172035456|ref|YP_001801957.1| rRNA SAM-dependent methyltransferase [Cyanothece sp. ATCC 51142]
gi|354555546|ref|ZP_08974847.1| sun protein [Cyanothece sp. ATCC 51472]
gi|171696910|gb|ACB49891.1| Fmu, rRNA SAM-dependent methyltransferase [Cyanothece sp. ATCC
51142]
gi|353552605|gb|EHC22000.1| sun protein [Cyanothece sp. ATCC 51472]
Length = 452
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 94/334 (28%), Positives = 151/334 (45%), Gaps = 82/334 (24%)
Query: 12 WLDRAGFVSVLRLPA--RQRPSLSIYCYALDILFRGVAVEITNV-LSQVP------NVAL 62
W+ + G + +L Q P++ I L + ++T ++ P + L
Sbjct: 166 WVQQWGEATTEQLCHWFNQTPTIDIRINPLKTTLETLQTQLTEAGINATPFPPLPCTLRL 225
Query: 63 DSSMGILQNLPSILAGHY-------------LDVQPGQKVLDMCAAPGNKLTHIALLMND 109
+G +Q LP GH+ LD QPG+ ++D CAAPG K TH+A LM D
Sbjct: 226 QGKIGSIQTLPGFHQGHWTIQDSSAQLVSYLLDPQPGETIIDACAAPGGKTTHMAELMGD 285
Query: 110 TGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR----INTSSQIDIERMKLQKES 165
GT+IA D++ R+ K+++ ++LQL+SIQT + DS INT+
Sbjct: 286 QGTIIACDRTPSRLKKVQQNAQRLQLNSIQTILGDSRHLPQLINTA-------------- 331
Query: 166 FDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPL 225
DR+L+D PCSG G + + +KI+ + +Q+++L ++V
Sbjct: 332 -DRVLVDVPCSGLGTLHRHPDIR-WRQTPEKIQELSRLQQEILTQAAQWV---------- 379
Query: 226 LKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVM 285
K G LVY TC+L+ EN+ +I L HP+ L + +V
Sbjct: 380 -KPQGTLVYATCTLNPTENQQIIESFLTHHPQWNL-------------------KPPSVH 419
Query: 286 QRFGP--------PLIPTDRNTDTIGFFICKLRK 311
F P ++P + +TD GFF+ KL+K
Sbjct: 420 WLFSPFMTSSKWIQILPHEHHTD--GFFMVKLKK 451
>gi|334134798|ref|ZP_08508300.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus sp.
HGF7]
gi|333607642|gb|EGL18954.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus sp.
HGF7]
Length = 489
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/266 (33%), Positives = 131/266 (49%), Gaps = 41/266 (15%)
Query: 53 VLSQVPNVALDSSMG----ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMN 108
V+S N+AL G +Q+ S+L L + G VLD CAAPG K HIA M+
Sbjct: 256 VVSSGGNMALTPGFGQGDYSIQDESSMLVAEALRPEAGMTVLDCCAAPGGKTAHIAEKMD 315
Query: 109 DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDR 168
DTGT+ A D + ++E ++L L S+ T V D+ + + + SFDR
Sbjct: 316 DTGTVWACDLHPHKKRLIDEQAQRLGLKSVHTLVKDARELAG---------EFEPASFDR 366
Query: 169 ILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPL 225
ILLDAPCSGFG ++P + ++ I A +Q+ +L+AV+ L
Sbjct: 367 ILLDAPCSGFGVIRRKPDL----KWGKREEDIAGIAAVQQSILEAVH-----------GL 411
Query: 226 LKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVM 285
LK G+LVY TC++ ENE +A L HP+ ++ +P G A LE ++
Sbjct: 412 LKPGGVLVYSTCTIERTENEDAVARFLEAHPDF-VLDPIPTTGWPESA--PLEQAASGMI 468
Query: 286 QRFGPPLIPTDRNTDTIGFFICKLRK 311
++P TD GFFI ++R+
Sbjct: 469 S-----IMPDQYGTD--GFFIARIRR 487
>gi|394993912|ref|ZP_10386651.1| 16S rRNA methyltransferase B [Bacillus sp. 916]
gi|393805236|gb|EJD66616.1| 16S rRNA methyltransferase B [Bacillus sp. 916]
Length = 447
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/247 (32%), Positives = 122/247 (49%), Gaps = 38/247 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L LD +PG+ VLD CAAPG K HIA LM + G+L +LD + +V ++E
Sbjct: 235 IQDESSMLVARALDPKPGETVLDACAAPGGKSAHIAELMENEGSLTSLDLHRHKVKLIKE 294
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
++L L+ I D+ + E FDR+L+DAPCSGFG ++P
Sbjct: 295 GAERLGLTIIDAQTMDARKAGEV---------FGAERFDRVLVDAPCSGFGVIRRKPDM- 344
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ + + + IQ +L+ + PL+KK G LVY TC++ ENE
Sbjct: 345 ---KYTKTPEDSRRLSEIQLGILREI-----------APLVKKGGTLVYSTCTMDRTENE 390
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
V+ + HPE E P L ++ K L + + +Q ++P TD GFF
Sbjct: 391 EVMHAFIQEHPEFE-----PDLSLE----KRLPEKARPFVQDGSLQILPHYFGTD--GFF 439
Query: 306 ICKLRKK 312
I +RKK
Sbjct: 440 ISSMRKK 446
>gi|148241673|ref|YP_001226830.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
RCC307]
gi|147849983|emb|CAK27477.1| Ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
RCC307]
Length = 454
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/254 (32%), Positives = 124/254 (48%), Gaps = 39/254 (15%)
Query: 30 PSLSIYCYALDILFRGVAVEITNV-LSQVPN-VALDSSMGILQNLPSILAGHY------- 80
P L + C L + + V L+++P+ + L S G L L G +
Sbjct: 205 PPLDLRCNRLRSSREALLENLPAVALAELPDGLTLTSRPGPLPQLAGFSEGQWCVQDRAA 264
Query: 81 ------LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ 134
LD +PGQ+VLD CAAPG K THIA LM D G ++A+D + R+ ++ ++L
Sbjct: 265 QRIAPLLDPKPGQRVLDACAAPGGKTTHIAELMGDQGEVVAVDVAPRRLQQVSANAERLG 324
Query: 135 LSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLD 194
LS I+T D+T + + ESFDR+LLD PCSG G + +A++ NL
Sbjct: 325 LSCIRTEAADATDLT----------DWEAESFDRVLLDVPCSGLGT--LARHADARWNLK 372
Query: 195 -KKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILH 253
I+ +Q +LL+ QG LLK DG LVY TC++ EN V+ +
Sbjct: 373 PDGIEELVGLQHQLLE-----------QGARLLKPDGRLVYATCTVHPAENTGVVEAFVE 421
Query: 254 RHPEVELVQTLPQL 267
+P+ + + QL
Sbjct: 422 ENPDWQFSEPPMQL 435
>gi|78778810|ref|YP_396922.1| sun protein [Prochlorococcus marinus str. MIT 9312]
gi|78712309|gb|ABB49486.1| sun protein [Prochlorococcus marinus str. MIT 9312]
Length = 438
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/229 (35%), Positives = 125/229 (54%), Gaps = 37/229 (16%)
Query: 60 VALDSSMGILQNLPSILAGHY-------------LDVQPGQKVLDMCAAPGNKLTHIALL 106
+ L S+ ++NLP G + L+ + G+K+LD CAAPG+K TH+A L
Sbjct: 218 ITLKSNPRSIKNLPGYSDGLWTIQDRSSQWIAPLLNPKEGEKILDACAAPGSKSTHLAEL 277
Query: 107 MNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESF 166
ND+ +IA+D+S R+ L+ +++L L S+ T D+T + IE F
Sbjct: 278 TNDSAEIIAVDRSAKRLKILQSNLERLNLKSVNTLKADATSL-------IELNPKFISYF 330
Query: 167 DRILLDAPCSGFGQRPMFYNANSFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPL 225
D+ILLDAPCSG G + N +S +L K KIKS +Q+KLL++++ PL
Sbjct: 331 DKILLDAPCSGIGT--LSRNPDSRWSLSKEKIKSLTLLQEKLLESIF-----------PL 377
Query: 226 LKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV---QTLPQLGMKG 271
LKK+G LVY TC++ +EN +I + ++ ++LV Q LP L G
Sbjct: 378 LKKEGTLVYSTCTICPDENNLLIERFIEKNKTLKLVGQKQILPSLDYPG 426
>gi|407404207|gb|EKF29767.1| nucleolar protein, putative [Trypanosoma cruzi marinkellei]
Length = 555
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 100/297 (33%), Positives = 141/297 (47%), Gaps = 54/297 (18%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
+L RG+ VE S+V +S++ I + LAG Y L Q +
Sbjct: 227 LLKRGMHVEPLEKWSKVGLQVFESNVPIAGTI-EYLAGQYMLQSAVSFLPVMALAPQEKE 285
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM AAPG K T+IA LM +TG L A D S+PR L +++L +++ YD
Sbjct: 286 RVLDMAAAPGGKTTYIAQLMKNTGALFANDVSEPRTKALNANLQRLGVTNTVVTNYDGVG 345
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKS---YANIQ 204
N K+ K +FDR+LLDAPC+G G ++ DK IK+ Y ++Q
Sbjct: 346 YN----------KIIK-NFDRVLLDAPCTGSG----------IISRDKSIKTSKHYEDVQ 384
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL 264
+ Q +S D +K G +VY TCS VEENEAV+ + + R VE+V+
Sbjct: 385 RASQQQRTLLLSAIDA-----VKVGGYVVYSTCSFLVEENEAVVEFAVRRR-HVEIVEMG 438
Query: 265 PQLGMKGLA---HKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKKYGEAPE 318
G GL H E +RF P + D GFF+CKL+K + PE
Sbjct: 439 LPFGRPGLTKYRHHRFH-EKMQCSRRFFPHVHNMD------GFFVCKLKKLSDDCPE 488
>gi|383754590|ref|YP_005433493.1| putative ribosomal RNA small subunit methyltransferase B
[Selenomonas ruminantium subsp. lactilytica TAM6421]
gi|381366642|dbj|BAL83470.1| putative ribosomal RNA small subunit methyltransferase B
[Selenomonas ruminantium subsp. lactilytica TAM6421]
Length = 444
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 129/250 (51%), Gaps = 46/250 (18%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L H +D QPG+ ++D C+APG K TH+A LM + G ++A D + ++T++EE
Sbjct: 237 VQDESSMLVAHVVDPQPGELIIDCCSAPGGKTTHMAALMKNEGRIVAGDIYEHKLTRIEE 296
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP-MF 184
++L + I+T++ D+ I + + DR+L+DAPCSG G ++P
Sbjct: 297 NAQRLGIDIIETNLIDAREIGEEYE----------DMADRVLVDAPCSGLGVLRRKPDAR 346
Query: 185 YNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
+N ++ ++I + +Q ++L + + LK G+LVY TC++ EN
Sbjct: 347 WNKSA-----EEIAALPPLQGEILDSAAK-----------ALKAGGVLVYSTCTIDRSEN 390
Query: 245 EAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
+ V+ L RHPE L QT L HK ED V L P TD GF
Sbjct: 391 DEVVEAFLARHPEFTLEQT-----GAFLPHK---REDMMVQ------LYPQRDGTD--GF 434
Query: 305 FICKLRKKYG 314
FI ++RK G
Sbjct: 435 FIARMRKAKG 444
>gi|169771881|ref|XP_001820410.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Aspergillus oryzae RIB40]
gi|83768269|dbj|BAE58408.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391874756|gb|EIT83601.1| tRNA and rRNA cytosine-C5-methylase [Aspergillus oryzae 3.042]
Length = 751
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 98/298 (32%), Positives = 147/298 (49%), Gaps = 52/298 (17%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +S++ L P LAGHY L QP +
Sbjct: 317 LINRGVVLEPVGKWSKVGLQVFESAV-PLGATPEYLAGHYILQAASSFLPVMALAPQPNE 375
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL-SSIQTHVYDST 146
+VLDM +APG K T+I+ LM +TG +IA D SKPR L I +L +++ TH+ T
Sbjct: 376 RVLDMASAPGGKTTYISALMRNTGCVIANDASKPRAKGLIGNIHRLGCKNTLVTHLDART 435
Query: 147 RINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYANI 203
+ FDR+LLDAPC+G G + P + + ++ + ++
Sbjct: 436 AFPKAMG-----------GFDRVLLDAPCTGTGVISKDPAVKTSKT----ERDFLAIPHM 480
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
Q++LL A V G G +VY TCS++VEENEAV+ ++L + P V++V T
Sbjct: 481 QRQLLLAAIDSVDHSSKTG-------GYIVYSTCSVTVEENEAVVQYVLRKRPNVKIVDT 533
Query: 264 -LPQLGMKGLAH---KDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKKYGEAP 317
L G G K +A+ + +R+ P N D GF++CKL KK G +P
Sbjct: 534 GLGDFGSPGFKEYMGKHFDAK-MTMTRRY----FPHRENVD--GFYVCKL-KKTGPSP 583
>gi|426200239|gb|EKV50163.1| hypothetical protein AGABI2DRAFT_216573 [Agaricus bisporus var.
bisporus H97]
Length = 551
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 139/291 (47%), Gaps = 47/291 (16%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV +E + V +SS+ + P LAGHY L Q
Sbjct: 229 AQALINRGVNLEPIGKWTNVGLQVFESSVPVGAT-PEYLAGHYMLQAASSFLPVIALSPQ 287
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
P ++VLDM +APG K THIA L+ +TG + A D +K R L + +L ++ YD
Sbjct: 288 PNERVLDMASAPGGKATHIAALLQNTGVVFANDANKARTKSLTANVHRLGCKNVVVCSYD 347
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY---A 201
E K+ FDR+LLDAPCSG G + +S + ++K + + +
Sbjct: 348 GR----------EFPKVMG-GFDRVLLDAPCSGTG----VISKDSSVKVNKSERDFTLLS 392
Query: 202 NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
++QK+L+ VS P K G LVY TCS++V+ENEAV+ + L + P V LV
Sbjct: 393 HLQKQLILCAIDSVS-------PESKTGGYLVYSTCSVTVDENEAVVDYALRKRPNVTLV 445
Query: 262 QTLPQLGMKGLAHKDLEAEDQAV--MQRFGPPLIPTDRNTDTIGFFICKLR 310
T G +G + + ++ +RF P N D GFF+ K +
Sbjct: 446 DTGLPFGREGFTKYRGKVFNPSIGLTRRF----YPHAHNMD--GFFVAKFK 490
>gi|428215873|ref|YP_007089017.1| ribosomal RNA small subunit methyltransferase RsmB [Oscillatoria
acuminata PCC 6304]
gi|428004254|gb|AFY85097.1| ribosomal RNA small subunit methyltransferase RsmB [Oscillatoria
acuminata PCC 6304]
Length = 456
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 98/329 (29%), Positives = 141/329 (42%), Gaps = 64/329 (19%)
Query: 12 WLDRAGFVSVLRLPA--RQRPSLSIYCYAL-------DILFRGVAVEITNVLSQVPNVAL 62
W DR G +L Q P+L + L + F+ V++ + + L
Sbjct: 167 WCDRLGVAETEKLCTWFNQSPTLDLRINPLKTTLEEVETAFQSAGVQVARLPHLPQALRL 226
Query: 63 DSSMGILQNLPSILAGHY-------------LDVQPGQKVLDMCAAPGNKLTHIALLMND 109
S G ++NLP AG + L+ +PGQ +D CAAPG K TH+A +M D
Sbjct: 227 CSGAGAIENLPGYQAGWWTIQDSSAQLVGSLLEAKPGQVAIDACAAPGGKTTHLAEMMGD 286
Query: 110 TGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRI 169
TGT+ A DK+ R+ K++E +LQL SIQT DS Q + D +
Sbjct: 287 TGTIWACDKAPSRLKKVKENADRLQLQSIQTLSGDSRNFTQFHQ-----------TADWV 335
Query: 170 LLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKD 229
LLDAPCSG G +A + + I+ + +Q +LL +V K
Sbjct: 336 LLDAPCSGLGTLHRRADAR-WRQTPENIQELSQLQGELLAETANWV-----------KPG 383
Query: 230 GILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFG 289
G LVY TC++ +ENE VI L H + E+ P AH F
Sbjct: 384 GHLVYATCTIHPKENEEVILGFLASHADWEID---PPTTDSPAAH-------------FA 427
Query: 290 PP---LIPTDRNTDTIGFFICKLRKKYGE 315
P + + D GFF+ +LRK+ E
Sbjct: 428 QPEGWITVWPHHHDMDGFFMVRLRKQQTE 456
>gi|407852470|gb|EKG05950.1| nucleolar protein, putative [Trypanosoma cruzi]
Length = 538
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 99/290 (34%), Positives = 138/290 (47%), Gaps = 54/290 (18%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
+L RG+ VE S+V +S++ I + LAG Y L Q +
Sbjct: 212 LLKRGMHVEPLEKWSKVGLQVFESNVPIAGTV-EYLAGQYMLQSAVSFLPVMALAPQEKE 270
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM AAPG K T+IA LM +TG L A D S+PR L +++L +++ YD
Sbjct: 271 RVLDMAAAPGGKTTYIAQLMKNTGVLFANDMSEPRTKALNANLQRLGVTNTVVTNYDGAG 330
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKS---YANIQ 204
N K+ K +FDR+LLDAPC+G G ++ DK IKS Y ++Q
Sbjct: 331 YN----------KIMK-NFDRVLLDAPCTGSG----------IISRDKSIKSSKHYEDVQ 369
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL 264
+ Q +S D +K G +VY TCS VEENEAV+ + + R VE+V+
Sbjct: 370 RASQQQRTLLLSAIDA-----VKVGGYVVYSTCSFLVEENEAVVEFAVRRR-HVEIVEMG 423
Query: 265 PQLGMKGLA---HKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
G GL H E +RF P + D GFF+CKL+K
Sbjct: 424 LPFGRPGLTKYRHHRFH-EKMQCSRRFFPHVHNMD------GFFVCKLKK 466
>gi|336272654|ref|XP_003351083.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Sordaria macrospora k-hell]
gi|380093642|emb|CCC08606.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 744
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 107/326 (32%), Positives = 149/326 (45%), Gaps = 57/326 (17%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V DS++ L P LAGHY L Q G+
Sbjct: 316 LINRGVTLEPVGKWSKVGLQVFDSNV-PLGATPEYLAGHYILQAASSFLPVMALCPQEGE 374
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM +APG K TH+A LM +TG + A D SK R L I +L ++ YD+
Sbjct: 375 RVLDMASAPGGKTTHMAALMKNTGVIFANDPSKQRAKGLIGNIHRLGARNVIVCNYDARE 434
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANIQKK 206
FDR+LLDAPCSG G + + + N D+K ++QK+
Sbjct: 435 FPRVMG-----------GFDRVLLDAPCSGTGV--IAKDPSVKTNRDEKDFLQLPHLQKQ 481
Query: 207 LLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQ 266
LL A V G G +VY TCS++VEENE V+A+ L R P V+LV+T
Sbjct: 482 LLLAAIDSVDHASKTG-------GYVVYSTCSVAVEENEQVVAYALSRRPNVKLVETGLA 534
Query: 267 LGMKGLA-------HKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKKYGEAPEI 319
G +G H L+ + +R+ P L D GFF+ K +K G P
Sbjct: 535 FGKEGFTSFMGKSFHPSLK-----LTRRYYPHLYNVD------GFFVAKF-QKLGPTPAN 582
Query: 320 YIHPHLNDCI---VIGPLLKLSQSVV 342
+ + D + G LK S+ VV
Sbjct: 583 AVRANGVDKSNKPLEGETLKESEEVV 608
>gi|433544430|ref|ZP_20500814.1| ribosomal RNA small subunit methyltransferase [Brevibacillus agri
BAB-2500]
gi|432184285|gb|ELK41802.1| ribosomal RNA small subunit methyltransferase [Brevibacillus agri
BAB-2500]
Length = 448
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 86/249 (34%), Positives = 133/249 (53%), Gaps = 41/249 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L +PG +VLD CAAPG K THIA LM + G ++A D + + +
Sbjct: 235 IQDESSMLVAPALAAKPGMRVLDACAAPGGKTTHIAELMENRGHIVACDLHPHKRDLIAQ 294
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP-MF 184
T K+L +S I+ TS +D+ L +FDRILLDAPCSGFG ++P +
Sbjct: 295 TAKRLGISIIEP--------ITSDALDLPDRGLG--TFDRILLDAPCSGFGVIRRKPDLK 344
Query: 185 YNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
+N + +++ A +Q +LL+A+ P+L DG+LVY TC++ +EN
Sbjct: 345 WNKTP-----EDVRAIAQLQYELLKAL-----------APMLAADGVLVYSTCTIEPKEN 388
Query: 245 EAVIAWILHRHPEVELVQTLPQ-LGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIG 303
+ ++ + HP+ L +TL Q L AH D E A +Q ++P +D G
Sbjct: 389 QEIVQRFVKEHPDFVLDETLVQDLPQAARAHVD---ETGACVQ-----ILPHHFESD--G 438
Query: 304 FFICKLRKK 312
FFI +L++K
Sbjct: 439 FFIARLKRK 447
>gi|85119485|ref|XP_965642.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Neurospora crassa OR74A]
gi|28927454|gb|EAA36406.1| hypothetical protein NCU02511 [Neurospora crassa OR74A]
Length = 746
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 139/292 (47%), Gaps = 53/292 (18%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V DS++ L P LAGHY L Q G+
Sbjct: 324 LINRGVTLEPVGKWSKVGLQVFDSNV-PLGATPEYLAGHYILQAASSFLPVMALCPQEGE 382
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM +APG K TH+A LM +TG + A D SK R L I +L ++ YD+
Sbjct: 383 RVLDMASAPGGKTTHMAALMKNTGVIFANDPSKQRAKGLIGNIHRLGARNVIVCNYDAR- 441
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANIQKK 206
+ R+ FDR+LLDAPCSG G + + + N D+K ++QK+
Sbjct: 442 -------EFPRV---MGGFDRVLLDAPCSGTGV--IAKDPSVKTNRDEKDFLQLPHLQKQ 489
Query: 207 LLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQ 266
LL A V G G +VY TCS++VEENE V+A+ L R P V+LV+T
Sbjct: 490 LLLAAIDSVDHASKTG-------GYVVYSTCSVAVEENEQVVAYALSRRPNVKLVETGLA 542
Query: 267 LGMKGLA-------HKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
G +G H L+ + +R+ P L D GFF+ K +K
Sbjct: 543 FGKEGFTSFMGKSFHPSLK-----LTRRYYPHLYNVD------GFFVAKFQK 583
>gi|296331149|ref|ZP_06873623.1| RNA-binding Sun protein [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305674305|ref|YP_003865977.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus subtilis
subsp. spizizenii str. W23]
gi|296151793|gb|EFG92668.1| RNA-binding Sun protein [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305412549|gb|ADM37668.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus subtilis
subsp. spizizenii str. W23]
Length = 447
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 123/248 (49%), Gaps = 40/248 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L LD +PG+ VLD CAAPG K HI LM + G++ +LD K +V ++E
Sbjct: 235 IQDESSMLVARALDPKPGETVLDACAAPGGKSAHIGELMENKGSVTSLDLHKHKVKLIKE 294
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP-MF 184
+L L+ I D+ + + + FDRIL+DAPCSGFG ++P M
Sbjct: 295 AADRLGLTIIDAKTMDARKAGET---------FENGQFDRILVDAPCSGFGVIRRKPDMK 345
Query: 185 YNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
Y D + A IQ +L+ + PL+KK G LVY TC++ EN
Sbjct: 346 YTKKP----DDSTR-LAEIQLSILREI-----------APLVKKGGTLVYSTCTMDRTEN 389
Query: 245 EAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
E VI + HP+ E P L ++ K L + + ++ ++P TD GF
Sbjct: 390 EEVIHAFIQEHPDFE-----PDLSLE----KRLPEKARPFVRDGRVQILPHYFGTD--GF 438
Query: 305 FICKLRKK 312
FIC +RKK
Sbjct: 439 FICSMRKK 446
>gi|253575778|ref|ZP_04853113.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus sp.
oral taxon 786 str. D14]
gi|251844821|gb|EES72834.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus sp.
oral taxon 786 str. D14]
Length = 506
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 86/250 (34%), Positives = 124/250 (49%), Gaps = 41/250 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L LD QPG VLD CAAPG K HIA +M G ++A D + +E+
Sbjct: 287 VQDESSMLVAEALDPQPGMNVLDCCAAPGGKTCHIAEIMEGRGRVLANDIHPHKAKLIED 346
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
K+L L ++ T D+ ++ ER+K SFDRILLD PCSG G ++P
Sbjct: 347 HAKRLGLDNVDTLSGDALQL-------AERLK--AASFDRILLDVPCSGLGVIRRKPDLK 397
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
A + + A +Q+ LL +V LLK G+LVY TC++ EN
Sbjct: 398 WAKK----PEDVTEIAGVQRTLLDSVS-----------GLLKPGGLLVYSTCTIEPRENA 442
Query: 246 AVIAWILHRHPEVELVQ---TLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTI 302
++A L RHPE EL + + G A +EA G ++P D ++D
Sbjct: 443 EMVASFLSRHPEFELADEPISWKERGALAAAAGRVEA---------GLQILPQDAHSD-- 491
Query: 303 GFFICKLRKK 312
GF+I +LR+K
Sbjct: 492 GFYIARLRRK 501
>gi|257058561|ref|YP_003136449.1| sun protein [Cyanothece sp. PCC 8802]
gi|256588727|gb|ACU99613.1| sun protein [Cyanothece sp. PCC 8802]
Length = 451
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 100/322 (31%), Positives = 145/322 (45%), Gaps = 57/322 (17%)
Query: 11 LWLDRAGFVSVLRLPA--RQRPSLSIYCYALDILFRGVAVEIT-NVLSQVP-----NVAL 62
LWL++ G + L Q P L I L V ++ L+ +P + L
Sbjct: 165 LWLEQWGLETTEELCNWFNQPPVLDIRINPLKTTLEEVKTTLSQGNLTLMPLEIPQGLRL 224
Query: 63 DSSMGILQNLPSILAG-------------HYLDVQPGQKVLDMCAAPGNKLTHIALLMND 109
G +Q+LP G H LD QP + ++D CAAPG K THIA LM D
Sbjct: 225 QGKTGAIQDLPGFKEGWWTVQDSSAQLVSHLLDPQPSEVIIDACAAPGGKTTHIAELMGD 284
Query: 110 TGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRI 169
GT+ A D+ R+ KL ++LQL+SI+ DS +++ I DR+
Sbjct: 285 QGTIWACDRYASRLKKLSANKERLQLNSIKIVTGDSRQLDQFQGI-----------ADRV 333
Query: 170 LLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKD 229
L+DAPCSG G + + +KI+ A +QK+LL+ +V K
Sbjct: 334 LVDAPCSGLGTLHRHPDIR-WRQTPEKIEELAILQKELLETTANWV-----------KPQ 381
Query: 230 GILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFG 289
GILVY TC+L+ +ENE VI L HP ++ P A K + A
Sbjct: 382 GILVYATCTLTYQENEGVIEHFLASHPHWKIDVPSPD----SPAAKWMTASGAI------ 431
Query: 290 PPLIPTDRNTDTIGFFICKLRK 311
++P ++ D GFF+ KL+K
Sbjct: 432 -KILPHQQDMD--GFFMVKLKK 450
>gi|72388220|ref|XP_844534.1| nucleolar protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|62359769|gb|AAX80199.1| nucleolar protein, putative [Trypanosoma brucei]
gi|70801067|gb|AAZ10975.1| nucleolar protein, putative [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
Length = 525
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 95/282 (33%), Positives = 140/282 (49%), Gaps = 44/282 (15%)
Query: 44 RGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQKVL 90
RG+ VE S+V +S++ I + LAGHY L Q ++VL
Sbjct: 203 RGMNVEPLEKWSKVGLQVFESNVPISGTV-EYLAGHYMLQSAVSFLPVMALAPQINERVL 261
Query: 91 DMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINT 150
DM AAPG K T+IA LM +TG + A D S+PR L +++L +++ YD
Sbjct: 262 DMAAAPGGKTTYIAQLMKNTGVIFANDVSEPRTKSLNANLQRLGVTNTVVTNYDG----- 316
Query: 151 SSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQA 210
+ E++ ++FDRILLDAPC+G G ++ DK IK+ + Q + +Q
Sbjct: 317 ---VGFEKV---MKNFDRILLDAPCTGSG----------IISRDKSIKT--SKQYEDVQR 358
Query: 211 VYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMK 270
+ I ++ G +VY TCS VEENEAV+ ++LHR +V +V+T G
Sbjct: 359 ASQLQRSLLLSAIDAVRVGGYIVYSTCSFLVEENEAVVDFVLHRR-DVAIVETGLPFGRP 417
Query: 271 GLA-HKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
GL ++ D+ R L P N D GFF+CKL+K
Sbjct: 418 GLTKYRHHRFHDKLQNAR---RLFPHVHNMD--GFFVCKLKK 454
>gi|386758297|ref|YP_006231513.1| protein RsmB [Bacillus sp. JS]
gi|384931579|gb|AFI28257.1| RsmB [Bacillus sp. JS]
Length = 447
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 124/248 (50%), Gaps = 40/248 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L LD +P + VLD CAAPG K HIA LM + G++ +LD K +V ++E
Sbjct: 235 IQDESSMLVARALDPKPDETVLDACAAPGGKSAHIAELMKNKGSVTSLDLHKHKVKLIKE 294
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP-MF 184
+L L+ I D+ + + + E FDRIL+DAPCSGFG ++P M
Sbjct: 295 AADRLGLTIIHAETMDARKAGET---------FENEKFDRILVDAPCSGFGVIRRKPDMK 345
Query: 185 YNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
Y D + A IQ +L+ + PL+KK G LVY TC++ EN
Sbjct: 346 YTKKP----DDSAR-LAEIQLSILREI-----------APLVKKGGTLVYSTCTMDRTEN 389
Query: 245 EAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
+ VI + HP+ E P L ++ K L + + ++ ++P TD GF
Sbjct: 390 DEVIHAFIQEHPDFE-----PDLSLE----KRLPEKARPFVRDGRLQILPHYFGTD--GF 438
Query: 305 FICKLRKK 312
FIC +RKK
Sbjct: 439 FICSMRKK 446
>gi|384175316|ref|YP_005556701.1| ribosomal RNA small subunit methyltransferase B [Bacillus subtilis
subsp. subtilis str. RO-NN-1]
gi|349594540|gb|AEP90727.1| ribosomal RNA small subunit methyltransferase B [Bacillus subtilis
subsp. subtilis str. RO-NN-1]
Length = 447
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 125/248 (50%), Gaps = 40/248 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L LD +P + VLD CAAPG K HIA LM + G++++LD K +V ++E
Sbjct: 235 IQDESSMLVARALDPKPDETVLDACAAPGGKSAHIAELMKNKGSVMSLDLHKHKVKLIKE 294
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP-MF 184
+L L+ I D+ + + + E FDRIL+DAPCSGFG ++P M
Sbjct: 295 AADRLGLTIIHAETMDARKAGET---------FENEQFDRILVDAPCSGFGVIRRKPDMK 345
Query: 185 YNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
Y D + A IQ +L+ + PL+KK G LVY TC++ EN
Sbjct: 346 YTKKP----DDSAR-LAEIQLSILREI-----------APLVKKGGTLVYSTCTMDRTEN 389
Query: 245 EAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
+ VI + HP+ E P L ++ K L + + ++ ++P TD GF
Sbjct: 390 DEVIHAFIQEHPDFE-----PDLSLE----KRLPEKVRPFVRDGRLQILPHYFGTD--GF 438
Query: 305 FICKLRKK 312
FIC +RKK
Sbjct: 439 FICSMRKK 446
>gi|350297026|gb|EGZ78003.1| NOL1/NOP2/sun family putative RNA met [Neurospora tetrasperma FGSC
2509]
Length = 746
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 139/292 (47%), Gaps = 53/292 (18%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V DS++ L P LAGHY L Q G+
Sbjct: 324 LINRGVTLEPVGKWSKVGLQVFDSNV-PLGATPEYLAGHYILQAASSFLPVMALCPQEGE 382
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM +APG K TH+A LM +TG + A D SK R L I +L ++ YD+
Sbjct: 383 RVLDMASAPGGKTTHMAALMKNTGVIFANDPSKQRAKGLIGNIHRLGARNVIVCNYDAR- 441
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANIQKK 206
+ R+ FDR+LLDAPCSG G + + + N D+K ++QK+
Sbjct: 442 -------EFPRV---MGGFDRVLLDAPCSGTGV--IAKDPSVKTNRDEKDFLQLPHLQKQ 489
Query: 207 LLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQ 266
LL A V G G +VY TCS++VEENE V+A+ L R P V+LV+T
Sbjct: 490 LLLAAIDSVDHASKTG-------GYVVYSTCSVAVEENEQVVAYALSRRPNVKLVETGLA 542
Query: 267 LGMKGLA-------HKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
G +G H L+ + +R+ P L D GFF+ K +K
Sbjct: 543 FGKEGFTSFMGKSFHPSLK-----LTRRYYPHLYNVD------GFFVAKFQK 583
>gi|428311848|ref|YP_007122825.1| ribosomal RNA small subunit methyltransferase RsmB [Microcoleus sp.
PCC 7113]
gi|428253460|gb|AFZ19419.1| ribosomal RNA small subunit methyltransferase RsmB [Microcoleus sp.
PCC 7113]
Length = 485
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 83/285 (29%), Positives = 130/285 (45%), Gaps = 48/285 (16%)
Query: 5 QSQCYCLWLDRAGFVSVLRLPARQRPSLSIYCYALDILFRGVAVEITNVLSQVPNVALDS 64
+++ C WL++ + + P R + +++ + VE+ + + +
Sbjct: 206 ETEQLCAWLNQTPTIDLRVNPMR------VSIEEVEVAMQSTGVEVRRIPQLPQALRVMG 259
Query: 65 SMGILQNLPSILAG-------------HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTG 111
G +Q LP G H L+ Q G+ V+D CAAPG K THIA LM D G
Sbjct: 260 GAGNIQQLPGFREGWWTVQDSSAQLVSHLLNPQAGEVVIDACAAPGGKTTHIAELMGDQG 319
Query: 112 TLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILL 171
T+ A D++ R+ KL+E ++LQL SIQ DS + + +S +R+LL
Sbjct: 320 TIWACDRAASRLKKLQENTQRLQLQSIQICTGDSRHFSQFT-----------DSANRVLL 368
Query: 172 DAPCSGFG---QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKK 228
DAPCSG G +RP + ++ + +Q +LL+ +V K
Sbjct: 369 DAPCSGLGTLHRRPDI----RWRVTPATVQELSVLQGELLEQAATWV-----------KP 413
Query: 229 DGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLA 273
+GILVY TC+L ENE VI L RH E ++ P + +
Sbjct: 414 EGILVYATCTLHPLENEGVIQSFLERHSEWQIRPPAPDSALAAFS 458
>gi|340053400|emb|CCC47690.1| putative nucleolar protein [Trypanosoma vivax Y486]
Length = 552
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 95/286 (33%), Positives = 139/286 (48%), Gaps = 44/286 (15%)
Query: 44 RGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQKVL 90
RG+ VE S+V +S++ I + LAGHY L QP ++VL
Sbjct: 227 RGMNVEPLEKWSKVGLQVFESNVPIAGTV-EYLAGHYMLQSAVSFLPVMALAPQPHERVL 285
Query: 91 DMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINT 150
D+ AAPG K T+IA LM +TG + A D S+PR L +++L +++ YD
Sbjct: 286 DLAAAPGGKTTYIAQLMKNTGVIFANDVSEPRTKSLNANLQRLGVTNTIVTNYDG----- 340
Query: 151 SSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQA 210
+ ER+ ++FDR+LLDAPC+G G ++ DK IK+ + + +Q
Sbjct: 341 ---VGYERV---MKNFDRVLLDAPCTGSG----------IISRDKSIKTSKHTED--VQR 382
Query: 211 VYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMK 270
+ + L+ G +VY TCS VEENEAV+ ++L RH V +V T G
Sbjct: 383 ASQLQRDLLLSAVDALRVGGHIVYSTCSFLVEENEAVVDFVL-RHRPVTVVDTGLPFGRP 441
Query: 271 GLA-HKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKKYGE 315
GL ++ D+ + L P N D GFF+CKLRK E
Sbjct: 442 GLTKYRHHRFHDKL---HYARRLFPHVHNMD--GFFVCKLRKLSNE 482
>gi|386714212|ref|YP_006180535.1| Sun protein [Halobacillus halophilus DSM 2266]
gi|384073768|emb|CCG45261.1| Sun protein [Halobacillus halophilus DSM 2266]
Length = 450
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 83/251 (33%), Positives = 119/251 (47%), Gaps = 44/251 (17%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L +D++ G +LD C+APG K THIA M D G ++A D + + +
Sbjct: 235 IQDQSSMLVAEMMDLEKGMTILDACSAPGGKTTHIAEKMEDEGEIVAYDLHVKKAKLVNK 294
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
++LQL+SIQ DS + D+ + SFDRILLDAPCSG G
Sbjct: 295 KAEQLQLTSIQASQADSRNL-----ADLH----EAASFDRILLDAPCSGLG----VLRGK 341
Query: 189 SFLNLDKKIK---SYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ K+++ S IQ +LL V PLLK+ G LVY TC++ ENE
Sbjct: 342 PDIKYHKQLEDVFSLRKIQDELLDRV-----------APLLKEGGKLVYSTCTVDRHENE 390
Query: 246 AVIAWILHRHPEV----ELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDT 301
+ L +HPE E LP++ D FG + P D +TD
Sbjct: 391 EAVQHFLKQHPEFTVDHEFFNDLPEVTKGSKGQSD-----------FGLQMFPQDFDTD- 438
Query: 302 IGFFICKLRKK 312
GFF+ +L K+
Sbjct: 439 -GFFLTRLVKQ 448
>gi|218439986|ref|YP_002378315.1| sun protein [Cyanothece sp. PCC 7424]
gi|218172714|gb|ACK71447.1| sun protein [Cyanothece sp. PCC 7424]
Length = 452
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 109/209 (52%), Gaps = 31/209 (14%)
Query: 51 TNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDT 110
T + Q+P + +Q+ + L H LD QP + ++D CAAPG K THIA LM D
Sbjct: 227 TRSIQQLP--GFEEGWWTVQDSSAQLVTHLLDPQPDEIIIDACAAPGGKTTHIAQLMGDR 284
Query: 111 GTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRIL 170
GT+ A D+ R+ K+++ ++LQL+SI+ DS + +E+ DR+L
Sbjct: 285 GTIWACDRVPSRLRKVQQNAERLQLNSIRICEGDSRHLTQF-----------RETADRVL 333
Query: 171 LDAPCSGFG---QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLK 227
LDAPCSG G +RP + +KI + +Q +LL+ +V K
Sbjct: 334 LDAPCSGLGTLHKRPDI----RWRQTPEKIAELSQLQTELLEETATWV-----------K 378
Query: 228 KDGILVYCTCSLSVEENEAVIAWILHRHP 256
GILVY TC+L+ ENE VIA L RHP
Sbjct: 379 PKGILVYATCTLNPLENERVIAAFLDRHP 407
>gi|336464921|gb|EGO53161.1| hypothetical protein NEUTE1DRAFT_150546 [Neurospora tetrasperma
FGSC 2508]
Length = 746
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 139/292 (47%), Gaps = 53/292 (18%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V DS++ L P LAGHY L Q G+
Sbjct: 324 LINRGVTLEPVGKWSKVGLQVFDSNV-PLGATPEYLAGHYILQAASSFLPVMALCPQEGE 382
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM +APG K TH+A LM +TG + A D SK R L I +L ++ YD+
Sbjct: 383 RVLDMASAPGGKTTHMAALMKNTGVIFANDPSKQRAKGLIGNIHRLGARNVIVCNYDAR- 441
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANIQKK 206
+ R+ FDR+LLDAPCSG G + + + N D+K ++QK+
Sbjct: 442 -------EFPRV---MGGFDRVLLDAPCSGTGV--IAKDPSVKTNRDEKDFLQLPHLQKQ 489
Query: 207 LLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQ 266
LL A V G G +VY TCS++VEENE V+A+ L R P V+LV+T
Sbjct: 490 LLLAAIDSVDHASKTG-------GYVVYSTCSVAVEENEQVVAYALSRRPNVKLVETGLA 542
Query: 267 LGMKGLA-------HKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
G +G H L+ + +R+ P L D GFF+ K +K
Sbjct: 543 FGKEGFTSFMGKSFHPSLK-----LTRRYYPHLYNVD------GFFVAKFQK 583
>gi|218245524|ref|YP_002370895.1| sun protein [Cyanothece sp. PCC 8801]
gi|218166002|gb|ACK64739.1| sun protein [Cyanothece sp. PCC 8801]
Length = 451
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 98/326 (30%), Positives = 146/326 (44%), Gaps = 65/326 (19%)
Query: 11 LWLDRAGFVSVLRLPA--RQRPSLSIYCYALDILFRGVAVEIT-NVLSQVP-----NVAL 62
LWL++ G + L Q P L I L V ++ L+ +P + L
Sbjct: 165 LWLEQWGLETTEELCNWFNQPPVLDIRINPLKTTLEEVKTTLSQGNLTLMPLEIPQGLRL 224
Query: 63 DSSMGILQNLPSILAG-------------HYLDVQPGQKVLDMCAAPGNKLTHIALLMND 109
G +Q+LP G H LD QP + ++D CAAPG K THIA LM D
Sbjct: 225 QGKTGAIQDLPGFKEGWWTVQDSSAQLVSHLLDPQPSEVIIDACAAPGGKTTHIAELMGD 284
Query: 110 TGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRI 169
GT+ A D+ R+ KL ++LQL+SI+ DS +++ I DR+
Sbjct: 285 QGTIWACDRYASRLKKLSANKERLQLNSIKIVTGDSRQLDQFQGI-----------ADRV 333
Query: 170 LLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKD 229
L+DAPCSG G + + +KI+ A +QK+LL+ +V K
Sbjct: 334 LVDAPCSGLGTLHRHPDIR-WRQTPEKIEELAILQKELLETTANWV-----------KPQ 381
Query: 230 GILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFG 289
GILVY TC+L+ +ENE VI L HP ++ D+ + + V +
Sbjct: 382 GILVYATCTLTYQENEGVIEHFLASHPHWKI---------------DVPSPNSPVAKWMT 426
Query: 290 PP----LIPTDRNTDTIGFFICKLRK 311
++P ++ D GFF+ KL+K
Sbjct: 427 ASGSIKILPHQQDMD--GFFMVKLKK 450
>gi|409082406|gb|EKM82764.1| hypothetical protein AGABI1DRAFT_118201 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 551
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 139/291 (47%), Gaps = 47/291 (16%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV +E + V +SS+ + P LAGHY L Q
Sbjct: 229 AQALINRGVNLEPIGKWTNVGLQIFESSVPVGAT-PEYLAGHYMLQAASSFLPVIALSPQ 287
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
P ++VLDM +APG K THIA L+ +TG + A D +K R L + +L ++ YD
Sbjct: 288 PNERVLDMASAPGGKATHIAALLQNTGVVFANDANKARTKSLTANVHRLGCKNVVVCSYD 347
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY---A 201
E K+ FDR+LLDAPCSG G + +S + ++K + + +
Sbjct: 348 GR----------EFPKVMG-GFDRVLLDAPCSGTG----VISKDSSVKVNKSERDFTLLS 392
Query: 202 NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
++QK+L+ VS P K G LVY TCS++V+ENEAV+ + L + P V LV
Sbjct: 393 HLQKQLILCAIDSVS-------PESKTGGYLVYSTCSVTVDENEAVVDYALRKRPNVTLV 445
Query: 262 QTLPQLGMKGLAHKDLEAEDQAV--MQRFGPPLIPTDRNTDTIGFFICKLR 310
T G +G + + ++ +RF P N D GFF+ K +
Sbjct: 446 DTGLPFGREGFTKYRGKVFNPSIGLTRRF----YPHAHNMD--GFFVAKFK 490
>gi|440299348|gb|ELP91916.1| hypothetical protein EIN_399460 [Entamoeba invadens IP1]
Length = 521
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 139/266 (52%), Gaps = 39/266 (14%)
Query: 55 SQVP---NVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTG 111
SQ+P V S M ILQ+ S A L QP +++LDMC+APG K THIA LM +TG
Sbjct: 280 SQIPIGATVEYLSGMYILQSSSSWAAVIALAPQPNERILDMCSAPGGKSTHIAALMKNTG 339
Query: 112 TLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILL 171
TL+A D SK R+ + +++L +++ YD E K+ FDR+L+
Sbjct: 340 TLVANDVSKDRLKAVVGNVQRLGITNTIVTSYDGH----------EFPKVMG-GFDRVLV 388
Query: 172 DAPCSGFGQRPMFYNANSFLNLDKK---IKSYANIQKKLLQAVYRFVSLFDWQGIPLLKK 228
DAPC+G G + +S + L K +++Y+ +QK+LL V+ P
Sbjct: 389 DAPCTGLG----IISKDSSVKLSKSEADLRTYSKMQKELLLHAIDSVN-------PKSAT 437
Query: 229 DGILVYCTCSLSVEENEAVIAWILHRHP----EVELVQTLPQLGMKGLAHKDLEAEDQAV 284
G +VY TCS+SV+ENEAV+ + L + ++L + + + GM G + +
Sbjct: 438 GGYVVYSTCSVSVQENEAVVDYALRKRNVKVVPIDLQEGVGEPGMVGWKQYHFNPSIK-L 496
Query: 285 MQRFGPPLIPTDRNTDTIGFFICKLR 310
+RF +P +N D GFF+CKL+
Sbjct: 497 ARRF----LPHVQNMD--GFFVCKLK 516
>gi|427708448|ref|YP_007050825.1| sun protein [Nostoc sp. PCC 7107]
gi|427360953|gb|AFY43675.1| sun protein [Nostoc sp. PCC 7107]
Length = 449
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 103/333 (30%), Positives = 146/333 (43%), Gaps = 78/333 (23%)
Query: 11 LWLDRAGFVSVLRLPA--RQRPSLSIYCYALDILFRGVAVEI------TNVLSQVPN-VA 61
+WLD+ G +L Q P++ + L V + T +S +P +
Sbjct: 158 VWLDQIGLAETEKLCEWMNQTPTIDLRINPLRTNLEQVETALASAGIFTQRISHLPQALR 217
Query: 62 LDSSMGILQNLPSILAG-------------HYLDVQPGQKVLDMCAAPGNKLTHIALLMN 108
L SS G +QNLP G H LD Q G+ V+D CAAPG K THIA LM
Sbjct: 218 LISSTGGIQNLPGFTEGWWVVQDASAQLVSHLLDPQAGEVVIDTCAAPGGKTTHIAELMQ 277
Query: 109 DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDR 168
D G + A D++ R+ KL+E ++L L SI+ DS + I DR
Sbjct: 278 DQGKVWAGDRTASRLRKLQENARRLNLQSIEICAGDSRNLPQFYNIG-----------DR 326
Query: 169 ILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKK 228
+LLDAPCSG G +A + + I+ + +QK+LL FV K
Sbjct: 327 VLLDAPCSGLGTLHRHADAR-WRQTPESIQELSLLQKQLLSHTSNFV-----------KN 374
Query: 229 DGILVYCTCSLSVEENEAVIAWILHRHPEVEL----------VQTLPQLGMKGLAHKDLE 278
G+LVY TC+L + ENEAVI+ L ++PE ++ V + PQ +K H+
Sbjct: 375 GGVLVYATCTLHLAENEAVISGFLAKNPEWQIEPPAVGSPYSVYSTPQGWLKVWPHR--- 431
Query: 279 AEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
D GFF+ +LRK
Sbjct: 432 --------------------WDMDGFFMVRLRK 444
>gi|395827251|ref|XP_003786818.1| PREDICTED: putative methyltransferase NSUN6 isoform 2 [Otolemur
garnettii]
Length = 381
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 74/189 (39%), Positives = 107/189 (56%), Gaps = 18/189 (9%)
Query: 43 FRGVAVEITNVLSQVPNV--ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKL 100
RG+ + +T + P+ L S + LQNLPS L H L+ QPG+ +LD+CAAPG K
Sbjct: 191 LRGIGIRMTEPVYLSPSFDNVLPSYL-FLQNLPSALVSHVLNPQPGEMILDLCAAPGGKT 249
Query: 101 THIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERM 159
THIA LM D G +IALDK +V K+++ L L+SI+ +D T+ + ++D+ E
Sbjct: 250 THIAALMQDQGVVIALDKIFNKVEKIKQNALLLGLNSIRAFCFDGTK---AVKLDVFEDT 306
Query: 160 K----LQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFV 215
K E+FDRILLDAPCSG GQRP + K++ SY +Q++L + +
Sbjct: 307 KGGPPFLPETFDRILLDAPCSGMGQRPNMACTWTL----KEVTSYQPLQRRLFTVAVQLL 362
Query: 216 ---SLFDWQ 221
DW+
Sbjct: 363 KPGGTADWR 371
Score = 38.5 bits (88), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 308 KLRKKY-GEAPEIYIHPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFA 366
+L+K++ G I HP L D ++I P++ +++ + + +V C AVLRGA V+
Sbjct: 74 ELKKQFNGLTVPILQHPDLRDILLI-PVIGPRKNIQNQQCEAVVGAQCGNAVLRGAHVYV 132
Query: 367 PGVLA 371
PG+++
Sbjct: 133 PGIVS 137
>gi|336113760|ref|YP_004568527.1| sun protein [Bacillus coagulans 2-6]
gi|335367190|gb|AEH53141.1| sun protein [Bacillus coagulans 2-6]
Length = 447
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 117/251 (46%), Gaps = 41/251 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+ + L +Q GQ++LD CAAPG K THIA + TG +IALD + + E
Sbjct: 235 IQDESSMAVAYALCIQEGQRILDACAAPGGKTTHIAEKLEGTGEVIALDLHPHKAKLVRE 294
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
++L ++ DS +K +FDRIL+DAPC+GFG ++P
Sbjct: 295 NAERLGTGQVEAVAMDSRDAGAH---------FEKTTFDRILVDAPCTGFGVLRRKPDIK 345
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
A + + I + +Q +L V LLK DGILV+ TC++ EENE
Sbjct: 346 YAKTVDD----IHALKQVQLSILSGVS-----------GLLKPDGILVFSTCTVDREENE 390
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
I L HPE E M+ L D MQ F P D D GFF
Sbjct: 391 GTIETFLQEHPEFEPYPLHVPEAMESLV-------DGYRMQIF-----PQDFGGD--GFF 436
Query: 306 ICKLRKKYGEA 316
I +RKK G+A
Sbjct: 437 IASIRKKAGKA 447
>gi|421873665|ref|ZP_16305277.1| ribosomal RNA small subunit methyltransferase B [Brevibacillus
laterosporus GI-9]
gi|372457452|emb|CCF14826.1| ribosomal RNA small subunit methyltransferase B [Brevibacillus
laterosporus GI-9]
Length = 436
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 129/247 (52%), Gaps = 39/247 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L + P +VLD CAAPG K THIA LM + G ++A D + +E+
Sbjct: 222 IQDESSMLVAPALHLTPNLRVLDACAAPGGKTTHIAELMGNQGEILACDVHPHKRELIEQ 281
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP-MF 184
K+L ++ I T V D+ + + FDRILLDAPCSGFG ++P +
Sbjct: 282 NAKRLGITIITTMVADAADL----------LDRNVGEFDRILLDAPCSGFGVIRRKPDLK 331
Query: 185 YNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
+N + + IK+ + IQ LL+ V PLLK DG LVY TC++ +EN
Sbjct: 332 WNKTA-----EDIKAISEIQYDLLERV-----------APLLKPDGYLVYSTCTIDSQEN 375
Query: 245 EAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
+ V+ + HPE EL ++L + GL K ++A V ++P ++D GF
Sbjct: 376 QDVVERFIAEHPEYELDKSLAEDLPTGLTEK-IDASKGYVQ------ILPHHFSSD--GF 426
Query: 305 FICKLRK 311
FI ++++
Sbjct: 427 FIARIKR 433
>gi|321315340|ref|YP_004207627.1| 16S rRNA methyltransferase B [Bacillus subtilis BSn5]
gi|320021614|gb|ADV96600.1| 16S rRNA methyltransferase B [Bacillus subtilis BSn5]
Length = 447
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 124/248 (50%), Gaps = 40/248 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L LD +P + VLD CAAPG K HIA LM + G++ +LD K +V ++E
Sbjct: 235 IQDESSMLVARALDPKPDETVLDACAAPGGKSAHIAELMKNKGSVTSLDLHKHKVKLIKE 294
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP-MF 184
+L L+ I D+ + + + E FDRIL+DAPCSGFG ++P M
Sbjct: 295 AADRLGLTIIHAETMDARKAGET---------FENEQFDRILVDAPCSGFGVIRRKPDMK 345
Query: 185 YNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
Y D + A IQ +L+ + PL+KK G LVY TC++ EN
Sbjct: 346 YTKKP----DDSAR-LAEIQLSILREI-----------APLVKKGGTLVYSTCTMDRTEN 389
Query: 245 EAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
+ VI + HP+ E P L ++ K L + + ++ ++P TD GF
Sbjct: 390 DEVIHAFIQEHPDFE-----PDLSLE----KRLPEKVRPFVRDGRLQILPHYFGTD--GF 438
Query: 305 FICKLRKK 312
FIC +RKK
Sbjct: 439 FICSMRKK 446
>gi|428279169|ref|YP_005560904.1| hypothetical protein BSNT_02587 [Bacillus subtilis subsp. natto
BEST195]
gi|291484126|dbj|BAI85201.1| hypothetical protein BSNT_02587 [Bacillus subtilis subsp. natto
BEST195]
Length = 447
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 124/248 (50%), Gaps = 40/248 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L LD +P + VLD CAAPG K HIA LM + G++ +LD K +V ++E
Sbjct: 235 IQDESSMLVARALDPKPDETVLDACAAPGGKSAHIAELMQNKGSVTSLDLHKHKVKLIKE 294
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP-MF 184
+L L+ I D+ + + + E FDRIL+DAPCSGFG ++P M
Sbjct: 295 AADRLGLTIIHAETMDARKAGET---------FENEQFDRILVDAPCSGFGVIRRKPDMK 345
Query: 185 YNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
Y D + A IQ +L+ + PL+KK G LVY TC++ EN
Sbjct: 346 YTKKP----DDSAR-LAEIQLSILREI-----------APLVKKGGTLVYSTCTMDRTEN 389
Query: 245 EAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
+ VI + HP+ E P L ++ K L + + ++ ++P TD GF
Sbjct: 390 DEVIHAFIQEHPDFE-----PDLSLE----KRLPEKVRPFVRDGRLQILPHYFGTD--GF 438
Query: 305 FICKLRKK 312
FIC +RKK
Sbjct: 439 FICSMRKK 446
>gi|345017809|ref|YP_004820162.1| sun protein [Thermoanaerobacter wiegelii Rt8.B1]
gi|344033152|gb|AEM78878.1| sun protein [Thermoanaerobacter wiegelii Rt8.B1]
Length = 444
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 129/247 (52%), Gaps = 40/247 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ + G VLD+CAAPG K THIA LM ++G +IA D R+ ++E
Sbjct: 232 IQDEASMLVSKTLNPKEGDTVLDVCAAPGGKTTHIAQLMKNSGEVIAFDLHPHRLELIKE 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
K+L +++++T V+DST +N E D++L D PC+G G ++P
Sbjct: 292 NCKRLGITNVKTEVFDSTFVNEKYL----------EKADKVLADVPCTGIGIIRKKP--- 338
Query: 186 NANSFLNLDKKIKSYANIQ-KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
D K+K+Y + +L++A Y+ + +KK G LVY TC++ EEN
Sbjct: 339 --------DIKLKNYTRKEISELIEAQYKILD----SSSKYVKKGGFLVYSTCTIGKEEN 386
Query: 245 EAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
+ VI L HP+ +LV ++ GL+ +E + +Q + P + D GF
Sbjct: 387 QNVIMKFLKEHPDFKLVDIKAEMP-SGLS---IETDSLGYVQ-----ITPLEHEID--GF 435
Query: 305 FICKLRK 311
FI KL++
Sbjct: 436 FISKLKR 442
>gi|403069237|ref|ZP_10910569.1| hypothetical protein ONdio_06550 [Oceanobacillus sp. Ndiop]
Length = 451
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 133/275 (48%), Gaps = 47/275 (17%)
Query: 44 RGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHI 103
+G+ V+ N+L+ + +Q+ S+L LD QPG VLD C+APG K+THI
Sbjct: 215 QGIIVDKGNILN---TMLFKEGYVTIQDQSSMLVAEMLDPQPGMHVLDGCSAPGGKVTHI 271
Query: 104 ALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK 163
A M + G + A D K +V +++ L LS I D+ + +E M ++
Sbjct: 272 AEKMENEGVIHAYDLHKKKVKLIDDKAALLHLSIIDAKPGDARK--------LEDMH-ER 322
Query: 164 ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK---IKSYANIQKKLLQAVYRFVSLFDW 220
ESFDRIL+DAPCSG G + DK+ I + IQ ++L++
Sbjct: 323 ESFDRILIDAPCSGLG----VIRGKPEIKYDKREEDIHRLSEIQTEILES---------- 368
Query: 221 QGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVEL----VQTLPQLGMKGLAHKD 276
PLLKKDG+L+Y TC++ EENE VI L + ++ +TLP
Sbjct: 369 -AAPLLKKDGLLIYSTCTVDAEENENVIKQFLLNNTGFQIDPSFFETLPS---------- 417
Query: 277 LEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
E ++ + G L P TD GFF+ +L+K
Sbjct: 418 -ELKESPGITEQGLQLFPQTFQTD--GFFLTRLKK 449
>gi|322692462|gb|EFY84371.1| tRNA (cytosine-5-)-methyltransferase NCL1 [Metarhizium acridum CQMa
102]
Length = 657
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 95/293 (32%), Positives = 133/293 (45%), Gaps = 55/293 (18%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +SS+ L P LAGHY LD Q +
Sbjct: 320 LINRGVTLEPVGKWSKVGLQVFESSV-PLGATPEYLAGHYILQAASSFLPCMALDPQENE 378
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM AAPG K T++A +M +TG +IA D +K R L I +L ++ YD+
Sbjct: 379 RVLDMAAAPGGKTTYMAAMMKNTGVIIANDPNKARAKGLIGNIHRLGARNVIVSNYDARE 438
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYANIQ 204
FDR+LLDAPCSG G + P + L+ + Q
Sbjct: 439 FPKPMG-----------GFDRVLLDAPCSGTGVIAKDPSVKTNKTELDF----MQLPHTQ 483
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL 264
K+LL A V+ G G +VY TCS+++EENE V+ + L R P V+LV T
Sbjct: 484 KQLLLAAIDSVNHSSKSG-------GYIVYSTCSVTIEENEQVVQYALKRRPNVKLVDTG 536
Query: 265 PQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
G +G + +RF P L T R N D GF++ K +K
Sbjct: 537 LAFGKEGFT--------SFMGKRFDPSLRLTRRYYPHAYNVD--GFYVAKFKK 579
>gi|310794553|gb|EFQ30014.1| NOL1/NOP2/sun family protein [Glomerella graminicola M1.001]
Length = 741
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 95/299 (31%), Positives = 139/299 (46%), Gaps = 56/299 (18%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +S++ L P LAG+Y L+ Q +
Sbjct: 321 LISRGVTLEPVGKWSKVGLQIFESNV-PLGATPEYLAGYYILQAASSFLPVMALEPQENE 379
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM AAPG K TH+A +M +TG ++A D SK R L I +L ++ YD+
Sbjct: 380 RVLDMAAAPGGKTTHMAAMMKNTGVIVANDPSKQRAKGLIGNIHRLGARNVVVSNYDARE 439
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY---ANIQ 204
FDR+LLDAPCSG G ++ + +K + + ++Q
Sbjct: 440 FPKPMG-----------GFDRVLLDAPCSGTG----VIAKDASVKTNKTERDFMLLPHMQ 484
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL 264
K+L+ A V+ G G +VY TCS++VEENEAV+ + L R P V LV T
Sbjct: 485 KQLILAAIDSVNHHSKTG-------GYIVYSTCSVTVEENEAVVQYALSRRPNVRLVDTN 537
Query: 265 PQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRKKYGEAP 317
G +G + ++F P L T R N D GFF+ K +K+G P
Sbjct: 538 LPFGREGFT--------SYMGKKFDPSLKLTRRYYPHTYNVD--GFFVAKF-QKFGPTP 585
>gi|403253553|ref|ZP_10919854.1| 16S rRNA methyltransferase B [Thermotoga sp. EMP]
gi|402811087|gb|EJX25575.1| 16S rRNA methyltransferase B [Thermotoga sp. EMP]
Length = 431
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 113/200 (56%), Gaps = 22/200 (11%)
Query: 62 LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKP 121
++ + +Q S L +++++PG +VLD CAAPG K T IA LM D G ++A+D S+
Sbjct: 214 INDGLASVQGESSQLVPFFMELKPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISRE 273
Query: 122 RVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQR 181
++ +E+ K+L+LSSI+T + D+ R+ Q ++FDR+L+DAPC+ G
Sbjct: 274 KIQLVEKHAKRLKLSSIETKIADAERLTEYVQ----------DTFDRVLVDAPCTSLGTA 323
Query: 182 PMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSV 241
+N + K ++ IQ +++Q WQ LL+K GIL+Y TC+++
Sbjct: 324 RNHPEVLRRVN-KEDFKKFSEIQLRMVQQA--------WQ---LLEKGGILLYSTCTVTK 371
Query: 242 EENEAVIAWILHRHPEVELV 261
EEN V+ ++ +VE++
Sbjct: 372 EENTEVVKRFVYEQKDVEVI 391
>gi|408356908|ref|YP_006845439.1| rRNA methyltransferase [Amphibacillus xylanus NBRC 15112]
gi|407727679|dbj|BAM47677.1| putative rRNA methyltransferase [Amphibacillus xylanus NBRC 15112]
Length = 452
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 85/279 (30%), Positives = 139/279 (49%), Gaps = 47/279 (16%)
Query: 44 RGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHI 103
+G+ +E ++L + S +Q+ S+L LD++ Q VLD C+APG K THI
Sbjct: 213 QGIIIEKGHILD---HPLFKSGSLTIQDQSSMLVVEMLDIKQDQIVLDACSAPGGKATHI 269
Query: 104 ALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK 163
+N+TG + A D + +V ++ ++L L +I T D ++N K +
Sbjct: 270 GEKLNNTGRVYAYDLHQKKVNLVKRKAEQLGLINISTAAIDGRQLN---------QKYEP 320
Query: 164 ESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDW 220
E+FDRIL+DAPCSGFG +P A + ++D + A++Q +LL+ +
Sbjct: 321 ETFDRILVDAPCSGFGVIRTKPDIKYAKTAKDVD----NLAHVQYELLEKI--------- 367
Query: 221 QGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVE----LVQTLPQLGMKGLAHKD 276
PLLKK+G L+Y TC++ ENE V+ L + E + LP+ K + H
Sbjct: 368 --APLLKKNGKLLYSTCTVDPTENEVVVTEFLINNQRYEVDPDFFKELPEFLNKEIEH-- 423
Query: 277 LEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKKYGE 315
+ G + P + N+D GFF+ ++R+K E
Sbjct: 424 ---------LQVGIQIFPNEFNSD--GFFLTRIRRKQDE 451
>gi|429862273|gb|ELA36929.1| tRNA (cytosine-5-)-methyltransferase ncl1 [Colletotrichum
gloeosporioides Nara gc5]
Length = 727
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 93/293 (31%), Positives = 135/293 (46%), Gaps = 55/293 (18%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +S++ L P LAGHY L+ Q +
Sbjct: 319 LIGRGVTLEPVGKWSKVGLQVFESNV-PLGATPEYLAGHYILQAASSFLPVMALEPQENE 377
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+ LDM AAPG K TH+A +M +TG ++A D SK R L I +L ++ YD+
Sbjct: 378 RCLDMAAAPGGKTTHMAAMMKNTGVIVANDPSKQRAKGLIGNIHRLGARNVVVSNYDARE 437
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY---ANIQ 204
FDR+LLDAPCSG G ++ + +K + + + Q
Sbjct: 438 FPKPMG-----------GFDRVLLDAPCSGTG----VIAKDASVKTNKTERDFMLLPHTQ 482
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL 264
K+L+ A V+ G G +VY TCS++VEENEAV+ + L R P V+LV T
Sbjct: 483 KQLILAAIDSVNHHSKTG-------GYIVYSTCSVTVEENEAVVQYALSRRPNVKLVDTN 535
Query: 265 PQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
G +G + ++F P L T R N D GFF+ K +K
Sbjct: 536 LPFGREGFT--------SFMGKKFDPSLKLTRRYYPHTYNVD--GFFVAKFQK 578
>gi|170289195|ref|YP_001739433.1| sun protein [Thermotoga sp. RQ2]
gi|170176698|gb|ACB09750.1| sun protein [Thermotoga sp. RQ2]
Length = 431
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 132/250 (52%), Gaps = 34/250 (13%)
Query: 62 LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKP 121
++ + +Q S L +++++PG +VLD CAAPG K T IA LM D G ++A+D S+
Sbjct: 214 INDGLASVQGESSQLVPFFMELRPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISRE 273
Query: 122 RVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQR 181
++ +E+ K+L+LSSI+T + D+ R+ Q ++FDR+L+DAPC+ G
Sbjct: 274 KIQLVEKHAKRLKLSSIETKIADAERLTEYVQ----------DTFDRVLVDAPCTSLGTA 323
Query: 182 PMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSV 241
+N + + ++ IQ +++Q WQ LL+K GIL+Y TC+++
Sbjct: 324 RNHPEVLRRVN-KEDFEKFSEIQLRMVQQA--------WQ---LLEKGGILLYSTCTVTK 371
Query: 242 EENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDT 301
EEN V+ ++ + E++ ++ K+ E E + +G ++P + T
Sbjct: 372 EENTEVVKRFVYEQKDAEVIDIRDKM-------KEFEVE--GIWDGYGFLMLPDETIT-- 420
Query: 302 IGFFICKLRK 311
F+I LRK
Sbjct: 421 -PFYISVLRK 429
>gi|409045898|gb|EKM55378.1| hypothetical protein PHACADRAFT_255965 [Phanerochaete carnosa
HHB-10118-sp]
Length = 704
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 140/291 (48%), Gaps = 47/291 (16%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV +E + V +SS+ I P LAGHY L Q
Sbjct: 379 AQALINRGVNLEPIGKWTNVGLQVFESSVPIGAT-PEYLAGHYMLQAASSFLPVIALGPQ 437
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
PG++VLDM +APG K TH+A LM +TG + A + +K R L + +L ++ YD
Sbjct: 438 PGERVLDMASAPGGKTTHMAALMQNTGVIFANELNKARTKSLTANVHRLGCKNVVVCSYD 497
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY---A 201
E K+ FDR+LLDAPCSG G + ++ + +K + + +
Sbjct: 498 GR----------EFPKVMG-GFDRVLLDAPCSGTG----VISKDASVKTNKTERDFTLLS 542
Query: 202 NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
++QK+L+ V P K G LVY TCS++V+ENEAV+ + L + P V+LV
Sbjct: 543 HLQKQLILCAIDSVQ-------PDSKTGGYLVYSTCSVTVDENEAVVDYALRKRPNVKLV 595
Query: 262 QTLPQLGMKGLAHKDLEAEDQAV--MQRFGPPLIPTDRNTDTIGFFICKLR 310
+T + G+ G + D V +RF P + D GFF+ K +
Sbjct: 596 ETGLEFGVPGFKSYRGKTFDPRVSMTRRFYPHVHNMD------GFFVAKFK 640
>gi|400596163|gb|EJP63947.1| NOL1/NOP2/sun family protein [Beauveria bassiana ARSEF 2860]
Length = 631
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 134/296 (45%), Gaps = 51/296 (17%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +SS+ L P LAGHY L QPG+
Sbjct: 288 LINRGVTLEPVGKWSKVGLQVFESSI-PLGATPEYLAGHYILQAASSFLPVMALSPQPGE 346
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM AAPG K TH A +M +TG ++A D +K R L I +L ++ YD+
Sbjct: 347 RVLDMAAAPGGKTTHCAAMMKNTGVVVANDPNKARAKGLIGNIHRLGAKNVIVCSYDAR- 405
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKL 207
+ R+ FDR+LLDAPCSG G + + +K + + +
Sbjct: 406 -------EFPRV---MGGFDRVLLDAPCSGTG----VIAKDPSVKTNKTERDFMTLPHTQ 451
Query: 208 LQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQL 267
Q + + + G G +VY TCS++VEENE V+A+ L R P V LV T
Sbjct: 452 KQLLLSAIDSVNHAGT-----GGYIVYSTCSVTVEENEQVVAYALSRRPNVRLVDTELPF 506
Query: 268 GMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRKKYGEAP 317
G +G + + F P L T R N D GF++ K KK G P
Sbjct: 507 GKEGFT--------SYMGKTFDPSLKLTRRYYPHTYNVD--GFYVAKF-KKIGPTP 551
>gi|379726842|ref|YP_005319027.1| ribosomal RNA small subunit methyltransferase B [Melissococcus
plutonius DAT561]
gi|376317745|dbj|BAL61532.1| ribosomal RNA small subunit methyltransferase B [Melissococcus
plutonius DAT561]
Length = 453
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 86/257 (33%), Positives = 128/257 (49%), Gaps = 56/257 (21%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDT--GTLIALDKSKPRVTKL 126
+Q+ S+LA L + +VLD CAAPG K THIA +N G +IALD ++ +
Sbjct: 241 IQDESSMLAAPTLQIDESNQVLDACAAPGGKTTHIATFLNQQKQGKIIALDIHDHKLKLI 300
Query: 127 EETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK-------ESFDRILLDAPCSGFG 179
+E +++Q+SSI I +E++ +K E FDRIL+DAPCSG G
Sbjct: 301 KENAERMQVSSI---------------IKLEKLDARKVKEVYPSEYFDRILVDAPCSGLG 345
Query: 180 ---QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT 236
++P + + IK A IQ++++++V +P LKK GIL Y T
Sbjct: 346 LMRRKPDIKYRKTL----QDIKKLAKIQEEIIESV-----------VPTLKKGGILTYST 390
Query: 237 CSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTD 296
C+++ EEN+ VI L +HPE + + + G E DQ + L P
Sbjct: 391 CTITQEENQHVIITFLKKHPEFKKIDII------GNEKVSAEVRDQML------TLYPHR 438
Query: 297 RNTDTIGFFICKLRKKY 313
TD GFFIC ++K Y
Sbjct: 439 WQTD--GFFICCMQKVY 453
>gi|87303174|ref|ZP_01085972.1| Sun protein (Fmu protein) [Synechococcus sp. WH 5701]
gi|87282341|gb|EAQ74301.1| Sun protein (Fmu protein) [Synechococcus sp. WH 5701]
Length = 447
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 125/264 (47%), Gaps = 43/264 (16%)
Query: 12 WLDRAGFVSVLRLPARQRPSLSIYCYALDILFRGV--AVEITNV----LSQVP-NVALDS 64
WL G L A Q P+L + L GV A+ V L +P ++L
Sbjct: 177 WLPPEG-AEAFALAANQPPALDLRVNHLRASREGVIEALAAAGVSAEPLPDLPWGLSLGG 235
Query: 65 SMGILQNLPSILAGHY-------------LDVQPGQKVLDMCAAPGNKLTHIALLMNDTG 111
G L+ LP GH+ LD QPG+++LD CAAPG K TH+A L+ D G
Sbjct: 236 RSGDLRALPGYDEGHWSVQDRTAQMIAPLLDPQPGERLLDACAAPGGKSTHLAELIGDAG 295
Query: 112 TLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILL 171
T++A+D+S+ R+ +L + ++L L++I+ D+ + FDRILL
Sbjct: 296 TVVAVDRSEGRLRRLRDNARRLGLNAIEPLTADAAITGA----------IGGPPFDRILL 345
Query: 172 DAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGI 231
DAPCSG G +A + I +Q+ LL+A+ +PLL G
Sbjct: 346 DAPCSGLGTLARHPDARWRIT-PASISDLVALQRSLLEAM-----------LPLLVPAGR 393
Query: 232 LVYCTCSLSVEENEAVIAWILHRH 255
LVY TC++ EN A+IA L +H
Sbjct: 394 LVYATCTVHPSENSALIASFLAQH 417
>gi|254526482|ref|ZP_05138534.1| ribosomal RNA small subunit methyltransferase B [Prochlorococcus
marinus str. MIT 9202]
gi|221537906|gb|EEE40359.1| ribosomal RNA small subunit methyltransferase B [Prochlorococcus
marinus str. MIT 9202]
Length = 438
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 125/229 (54%), Gaps = 37/229 (16%)
Query: 60 VALDSSMGILQNLPSILAGHY-------------LDVQPGQKVLDMCAAPGNKLTHIALL 106
+ L S+ ++NLP G + L+ + G+K+LD CAAPG+K TH+A L
Sbjct: 218 ITLKSNPRSIKNLPGYSDGLWTIQDRSSQWIAPLLNPKEGEKILDACAAPGSKSTHLAEL 277
Query: 107 MNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESF 166
ND+ ++A+D+S R+ L+ +++L L S+ T D+T + IE F
Sbjct: 278 TNDSAEILAVDRSAKRLKILQSNLERLNLKSVNTLKTDATSL-------IELNPNFISYF 330
Query: 167 DRILLDAPCSGFGQRPMFYNANSFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPL 225
D+IL+DAPCSG G + N +S +L K KIKS +Q+KLL++++ PL
Sbjct: 331 DKILIDAPCSGIGT--LSRNPDSRWSLSKEKIKSLTLLQEKLLESIF-----------PL 377
Query: 226 LKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV---QTLPQLGMKG 271
LKKDG LVY TC++ ++N +I + ++ ++LV Q LP L G
Sbjct: 378 LKKDGTLVYSTCTICPDDNNLLIKRFIEKNKTLKLVSQKQILPSLDYPG 426
>gi|428776022|ref|YP_007167809.1| sun protein [Halothece sp. PCC 7418]
gi|428690301|gb|AFZ43595.1| sun protein [Halothece sp. PCC 7418]
Length = 447
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 97/327 (29%), Positives = 151/327 (46%), Gaps = 66/327 (20%)
Query: 11 LWLDRAGFVSV--LRLPARQRPSLSIYCYALDILFRGVAVEITNV------LSQVP-NVA 61
LW D G + L + Q P+L + L + +T L VP +
Sbjct: 161 LWCDEFGEATADQLGIWFNQSPNLDLRINPLKTTPEALEKALTEANIAYSPLPFVPLGLR 220
Query: 62 LDSSMGILQNLPSILAGHY-------------LDVQPGQKVLDMCAAPGNKLTHIALLMN 108
L S +G ++ LP G + L Q G+ ++D CAAPG K THIA LM
Sbjct: 221 LSSGVGKIEQLPGFTEGWWTVQDFSAQLVSYLLSPQAGETIIDACAAPGGKTTHIAELMG 280
Query: 109 DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDR 168
D G + A D+++ R+ K+ ++LQL SI+T V D+ + SQ + + DR
Sbjct: 281 DEGKIWACDRAESRLKKVTNNAQRLQLKSIETRVGDAREL---SQF--------QNTADR 329
Query: 169 ILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKK 228
+L+DAPCSG G + + + + A +Q+++L A +V K
Sbjct: 330 VLIDAPCSGLGTLHRRTDLR-WRQTPENLVQLAKLQQEILTATATWV-----------KP 377
Query: 229 DGILVYCTCSLSVEENEAVIAWILHRHPEVELV---QTLPQLGMKGLAHKDLEAEDQAVM 285
+GILVY TC+++ ENE VI L HPE ++ +T P Q+++
Sbjct: 378 NGILVYATCTINPLENEDVIQAFLSHHPEWKIEAPPETFPA---------------QSLV 422
Query: 286 QRFGP-PLIPTDRNTDTIGFFICKLRK 311
G +IPT+ N+D GFF+ +LR+
Sbjct: 423 SSSGWLKVIPTEHNSD--GFFMVRLRR 447
>gi|407036203|gb|EKE38056.1| Proliferating-cell nucleolar antigen p120, putative [Entamoeba
nuttalli P19]
Length = 497
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 144/298 (48%), Gaps = 61/298 (20%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV V++ S+ V DS + I P LAG Y L Q
Sbjct: 231 AQKLINRGVNVDMVE-WSKSGLVVYDSQVPIGAT-PEYLAGQYILQSSSSWVSVIALAPQ 288
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
P +K+LDMCAAPG K THIA LM DTG L+A D SK R+ + + +L +++ YD
Sbjct: 289 PNEKILDMCAAPGGKTTHIAALMKDTGVLVANDISKDRLKAVIGNVHRLGITNTIITNYD 348
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK---IKSYA 201
E K+ + FDR+L+DAPC+G G + ++ + L K IK
Sbjct: 349 GH----------EFPKVMGQ-FDRVLVDAPCTGLG----IISRDAAVKLSKSEQDIKDCT 393
Query: 202 NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
IQK+L+ V+ P K G +VY TCS++VEENEAVI + L + V
Sbjct: 394 RIQKELILHAIDSVN-------PKSKTGGYVVYSTCSITVEENEAVIDYALKKRN----V 442
Query: 262 QTLPQLGMKGLAHKDLEAEDQAVMQ---RFGPPL------IPTDRNTDTIGFFICKLR 310
+ +P +A +D ED V RF P + P +N D GFF+CKL+
Sbjct: 443 KVVP------IALQDGVGEDGYVNHRQYRFHPSVKMAKRFFPHVQNMD--GFFVCKLK 492
>gi|428773859|ref|YP_007165647.1| sun protein [Cyanobacterium stanieri PCC 7202]
gi|428688138|gb|AFZ47998.1| sun protein [Cyanobacterium stanieri PCC 7202]
Length = 464
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 121/253 (47%), Gaps = 35/253 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ + L GH+L G+ V D CAAPG K THIA LM D GT+IA D R+ K+ E
Sbjct: 241 VQDSSAQLVGHFLAPVRGETVFDACAAPGGKTTHIAELMGDEGTIIACDNISSRLEKITE 300
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
+++L L S+Q DS+ + D + + DRIL+DAPCSG G +RP
Sbjct: 301 NVQRLGLKSVQVREGDSSEWEFCEEKD--KCDHEMALCDRILIDAPCSGLGTLHKRPDI- 357
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ +KIK A Q +L + + V K +G LVY TC+L+ ENE
Sbjct: 358 ---RWQQKPEKIKELAKKQLAILSNMAKGV-----------KNNGCLVYATCTLNPMENE 403
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
VI L HP+ +V L + ++ + + P N D GFF
Sbjct: 404 EVIEAFLESHPDWHIVTERNNL-----------TANFSITLKGAIKIFPHRHNMD--GFF 450
Query: 306 ICKLRKKYGEAPE 318
+ KL K GEA E
Sbjct: 451 MIKLAK--GEADE 461
>gi|160915468|ref|ZP_02077679.1| hypothetical protein EUBDOL_01476 [Eubacterium dolichum DSM 3991]
gi|158432588|gb|EDP10877.1| ribosomal RNA small subunit methyltransferase B [Eubacterium
dolichum DSM 3991]
Length = 415
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 110/198 (55%), Gaps = 30/198 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S L Y+D QP +++LD+C+APG K HIA M D G+++ D RV ++
Sbjct: 221 IQDEASQLVAQYVDPQPQERILDVCSAPGTKACHIAERMGDKGSIVCGDIHAHRVELIKN 280
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG----QRPMF 184
++LQL SIQ V D+T + +++ E FDR+L D PCSG+G + +
Sbjct: 281 GARRLQLQSIQAQVMDATSLK----------EIEGEMFDRVLCDVPCSGYGVLARKSDIK 330
Query: 185 YNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
Y+A S ++D I +Q+++LQ+ + V KDGILVY TC+L+ +EN
Sbjct: 331 YHAKS-TDMDTLIP----LQQQILQSASKHVV-----------KDGILVYSTCTLNKKEN 374
Query: 245 EAVIAWILHRHPEVELVQ 262
E +A L +H E E +Q
Sbjct: 375 EKQVAAFLAQHEEFECLQ 392
>gi|19113319|ref|NP_596527.1| RNA methyltransferase Nop2 (predicted) [Schizosaccharomyces pombe
972h-]
gi|74582834|sp|O94268.1|NOP2_SCHPO RecName: Full=Putative ribosomal RNA methyltransferase nop2;
AltName: Full=Nucleolar protein 2
gi|3810844|emb|CAA21805.1| RNA methyltransferase Nop2 (predicted) [Schizosaccharomyces pombe]
Length = 608
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 144/311 (46%), Gaps = 58/311 (18%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +S + I P LAGHY L QP +
Sbjct: 283 LINRGVNLEPIGKWSKVGLQVFESQVPIGA-TPEYLAGHYILQAASSFLPVMALAPQPNE 341
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
++LDM +APG K+T++A L +TG + A D +K R L I +L + + YD
Sbjct: 342 RILDMSSAPGGKVTYVAALQKNTGIIFANDSNKARTKALSANIHRLGVRNAIVCNYDG-- 399
Query: 148 INTSSQIDIERMKLQKE---SFDRILLDAPCSGFGQRPMFYNANSFLN--LDKKIKSYAN 202
K E FDR+LLDAPCSG G + Y S ++ + ++
Sbjct: 400 -----------RKFPNEVIGGFDRVLLDAPCSGTG---VIYKDQSVKTNKSERDFDTLSH 445
Query: 203 IQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQ 262
+Q++LL + V+ G G +VY TCS++V+E+EAVI + L + P V+LV
Sbjct: 446 LQRQLLLSAIDSVNADSKTG-------GFIVYSTCSITVDEDEAVIQYALKKRPNVKLVS 498
Query: 263 TLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRKKYGEA 316
T + G +G + +RF P L T R N D GFF+ KL+K +
Sbjct: 499 TGLEFGREGFT--------RFREKRFHPSLKLTRRYYPHVHNID--GFFVAKLKKISDKI 548
Query: 317 PEIYIHPHLND 327
P + + + D
Sbjct: 549 PTVNVADDMKD 559
>gi|148270410|ref|YP_001244870.1| sun protein [Thermotoga petrophila RKU-1]
gi|147735954|gb|ABQ47294.1| sun protein [Thermotoga petrophila RKU-1]
Length = 431
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 77/250 (30%), Positives = 130/250 (52%), Gaps = 34/250 (13%)
Query: 62 LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKP 121
+ + +Q S L +++++PG +VLD CAAPG K T IA L+ D G ++A+D S+
Sbjct: 214 IKDGLASVQGESSQLVPFFMELKPGLRVLDTCAAPGGKTTAIAELVKDQGKILAVDISRE 273
Query: 122 RVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQR 181
+ +E+ K+L+LSSI+T + D R+ Q ++FDRIL+DAPC+ G
Sbjct: 274 KTQLVEKHAKRLKLSSIETKIADVERLTEYVQ----------DTFDRILVDAPCTSLGTA 323
Query: 182 PMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSV 241
+N + K ++ IQ +++Q WQ LL+K GIL+Y TC+++
Sbjct: 324 RNHPEVLRRVN-KEDFKKFSEIQLRMVQQA--------WQ---LLEKGGILLYSTCTVTK 371
Query: 242 EENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDT 301
EEN V+ + +VE++ T ++ K+ E E + +G ++P + T
Sbjct: 372 EENTEVVKRFVSERKDVEVIDTRDKM-------KEFEVE--GIWDGYGFLMLPDETIT-- 420
Query: 302 IGFFICKLRK 311
F++ LRK
Sbjct: 421 -PFYVSVLRK 429
>gi|393220344|gb|EJD05830.1| NOL1/NOP2/sun family RNA met [Fomitiporia mediterranea MF3/22]
Length = 420
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 89/291 (30%), Positives = 139/291 (47%), Gaps = 46/291 (15%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV++E S V +SS+ L P LAGHY LD Q
Sbjct: 83 AQALIARGVSLEPLGKWSPVGLQVFESSVP-LGATPEYLAGHYMLQAASSFLPVMALDPQ 141
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
P +++LDM +APG K ++I+ LM +TG + A D +K R L I +L ++ YD
Sbjct: 142 PNERILDMASAPGGKSSYISALMQNTGVVFANDANKSRTKSLTANIHRLGCKNVVVCNYD 201
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYA--- 201
F+R+LLDAPCSG G + ++ + ++K + +A
Sbjct: 202 GREFPKVIG-----------GFERVLLDAPCSGTG----VISKDASVKVNKSARDFALLS 246
Query: 202 NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
++QK+L+ + D GI+VY TCS++V+ENEAV+ + L + P V+L+
Sbjct: 247 HLQKQLI------LCAIDSVTASSSSSPGIVVYSTCSVTVDENEAVVDYALRKRPHVQLL 300
Query: 262 QTLPQLGMKGLAHKDLEAEDQAV--MQRFGPPLIPTDRNTDTIGFFICKLR 310
+T G G + D +V +RF P + D GFF+ KL+
Sbjct: 301 ETGLAFGRDGFTRYRGKVFDPSVKLTRRFYPHVHNMD------GFFVAKLK 345
>gi|339009262|ref|ZP_08641834.1| ribosomal RNA small subunit methyltransferase B [Brevibacillus
laterosporus LMG 15441]
gi|338773740|gb|EGP33271.1| ribosomal RNA small subunit methyltransferase B [Brevibacillus
laterosporus LMG 15441]
Length = 453
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 131/247 (53%), Gaps = 39/247 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L + P +VLD CAAPG K TH+A LM + G ++A D + +E+
Sbjct: 239 IQDESSMLVAPALHLTPNLRVLDACAAPGGKTTHMAELMGNQGEILACDVHPHKRELIEQ 298
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP-MF 184
K+L ++ I T V D+ + ++R FDRILLDAPCSGFG ++P +
Sbjct: 299 NAKRLGITIITTMVADAADL-------VDR---NVGEFDRILLDAPCSGFGVIRRKPDLK 348
Query: 185 YNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
+N + + IK+ + IQ LL+ V PLLK DG LVY TC++ +EN
Sbjct: 349 WNKTA-----EDIKAISEIQYDLLERV-----------APLLKPDGYLVYSTCTIDSQEN 392
Query: 245 EAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
+ V+ + HPE EL ++L + GL K ++A V ++P ++D GF
Sbjct: 393 QDVVERFIAEHPEYELDKSLAEDLPTGLTEK-IDASKGYVQ------ILPHHFSSD--GF 443
Query: 305 FICKLRK 311
FI ++++
Sbjct: 444 FIARIKR 450
>gi|322705288|gb|EFY96875.1| tRNA (cytosine-5-)-methyltransferase NCL1 [Metarhizium anisopliae
ARSEF 23]
Length = 659
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 133/293 (45%), Gaps = 55/293 (18%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +SS+ L P LAGHY LD Q +
Sbjct: 321 LINRGVTLEPVGKWSKVGLQVFESSV-PLGATPEYLAGHYILQAASSFLPCMALDPQENE 379
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM AAPG K T++A +M +TG +IA D +K R L I +L ++ YD+
Sbjct: 380 RVLDMAAAPGGKTTYMAAMMKNTGVIIANDPNKARAKGLIGNIHRLGARNVIVSNYDARE 439
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYANIQ 204
FDR+LLDAPCSG G + P + L+ + Q
Sbjct: 440 FPKPMG-----------GFDRVLLDAPCSGTGVIAKDPSVKTNKTELDF----MQLPHTQ 484
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL 264
K+LL A V+ G G +VY TCS+++EENE V+ + L R P V+LV T
Sbjct: 485 KQLLLAAIDSVNHSSKSG-------GYIVYSTCSVTIEENEQVVQYALRRRPNVKLVDTG 537
Query: 265 PQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
G +G + ++F P L T R N D GF++ K +K
Sbjct: 538 LAFGKEGFT--------SFMGKKFDPSLRLTRRYYPHAYNVD--GFYVAKFKK 580
>gi|428776642|ref|YP_007168429.1| RNA methylase [Halothece sp. PCC 7418]
gi|428690921|gb|AFZ44215.1| RNA methylase, NOL1/NOP2/sun family [Halothece sp. PCC 7418]
Length = 464
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 81/247 (32%), Positives = 121/247 (48%), Gaps = 35/247 (14%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
LQ ++ A LD QPG++V+D+CAAPG K IA + TG ++A + R+++L
Sbjct: 86 LQEEIALTAVKVLDPQPGERVIDLCAAPGGKTVQIATRLQGTGMVVANEAQISRLSQLRA 145
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG--QRPMFYN 186
+ ++ +S++ YD T I LQ SFDR+L+D PCSG G ++
Sbjct: 146 MLDRIGVSNVMMSNYDGTSI-----------PLQNHSFDRVLVDVPCSGEGTLRKGKMTR 194
Query: 187 ANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEA 246
L +KI A QKKLL + + L+K +GI+VY TC+ + EENEA
Sbjct: 195 KQHRLRYSEKI---ATTQKKLLH-----------RALQLVKPNGIIVYSTCTFAPEENEA 240
Query: 247 VIAWILHRHPEVELVQTLPQLGMKGLAHKDLEA--EDQAVMQRFGPPLIPTDRNTDTIGF 304
VI +L +E GM GL + +D QR+ P DT GF
Sbjct: 241 VIDAVLGERGILESAAISHLKGMSGLQQWQGQTFRKDLVEAQRYFPHF------NDTGGF 294
Query: 305 FICKLRK 311
F+ ++R+
Sbjct: 295 FVARIRR 301
>gi|307150080|ref|YP_003885464.1| sun protein [Cyanothece sp. PCC 7822]
gi|306980308|gb|ADN12189.1| sun protein [Cyanothece sp. PCC 7822]
Length = 450
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 71/210 (33%), Positives = 113/210 (53%), Gaps = 31/210 (14%)
Query: 54 LSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTL 113
+SQ+P + +Q+ + L H LD QP + ++D CAAPG K THIA LM D GT+
Sbjct: 229 ISQLP--GFEEGWWTVQDSSAQLVTHLLDPQPEEIIIDACAAPGGKTTHIAELMQDRGTI 286
Query: 114 IALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDA 173
A D+ R+ K+++ ++LQL+SI+ DS ++ +E+ DR+L+DA
Sbjct: 287 WACDRVASRLRKVQQNAQRLQLNSIKICSGDSRQLTQF-----------RETADRVLIDA 335
Query: 174 PCSGFG---QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDG 230
PCSG G +RP + +KI+ + +Q++LL+ ++ K G
Sbjct: 336 PCSGLGTLHKRPDI----RWRQTPEKIEELSVLQRELLEEAASWI-----------KPKG 380
Query: 231 ILVYCTCSLSVEENEAVIAWILHRHPEVEL 260
+LVY TC+L+ ENE +I LH HP ++
Sbjct: 381 VLVYATCTLNPLENEKLIEAFLHHHPNWQI 410
>gi|427702673|ref|YP_007045895.1| ribosomal RNA small subunit methyltransferase RsmB [Cyanobium
gracile PCC 6307]
gi|427345841|gb|AFY28554.1| ribosomal RNA small subunit methyltransferase RsmB [Cyanobium
gracile PCC 6307]
Length = 472
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 103/182 (56%), Gaps = 19/182 (10%)
Query: 81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQT 140
LD +PGQ++LD CAAPG K TH+A L+ D G + ALD+S+ R+ +L+ ++L L++I++
Sbjct: 280 LDPRPGQRILDACAAPGGKSTHLAELIGDRGEVWALDRSEARLRRLDHNAERLGLTTIRS 339
Query: 141 HVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY 200
D+T + E + F+RILLDAPCSG G +A + D I
Sbjct: 340 LAADATGLG-------ELKPHWRGHFERILLDAPCSGLGTLARHPDARWRITPD-AIDGL 391
Query: 201 ANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVEL 260
+Q++LL+A+ +PLL G L+Y TC++ EN A IA +L HP+ L
Sbjct: 392 VILQRQLLEAM-----------LPLLAPGGRLLYATCTVEPRENGAQIAALLAAHPDWTL 440
Query: 261 VQ 262
++
Sbjct: 441 LE 442
>gi|390598058|gb|EIN07457.1| NOL1/NOP2/sun family RNA met [Punctularia strigosozonata HHB-11173
SS5]
Length = 419
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/291 (30%), Positives = 138/291 (47%), Gaps = 47/291 (16%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV +E + V +SS+ I P LAGHY L Q
Sbjct: 83 AQALINRGVNLEPIGKWTNVGLQVFESSVPIGAT-PEYLAGHYMLQAASSFLPVIALSPQ 141
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
P ++VLDM +APG K TH+A LM +TG + A D +K R L + +L ++ YD
Sbjct: 142 PNERVLDMASAPGGKTTHMAALMQNTGIIFANDATKARTKSLTANVHRLGCKNVIVCSYD 201
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYA--- 201
FDR+LLDAPCSG G + ++ + ++K + +A
Sbjct: 202 GREFPKVIG-----------GFDRVLLDAPCSGTG----VISKDASVKVNKSDRDFALLS 246
Query: 202 NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
++QK+L+ VS P G +VY TCS++V+ENEAV+ + L + P V+LV
Sbjct: 247 HLQKQLILCAIDSVS-------PTSATGGYVVYSTCSVTVDENEAVVDYALKKRPHVKLV 299
Query: 262 QTLPQLGMKGLAHKDLEAEDQAV--MQRFGPPLIPTDRNTDTIGFFICKLR 310
T + G+ G + ++V +RF P + N D GF++ K +
Sbjct: 300 DTGLEFGVPGFTKFRGKQFHESVKLTRRFYPHV----HNMD--GFYVAKFK 344
>gi|326389542|ref|ZP_08211109.1| sun protein [Thermoanaerobacter ethanolicus JW 200]
gi|392940847|ref|ZP_10306491.1| ribosomal RNA small subunit methyltransferase RsmB
[Thermoanaerobacter siderophilus SR4]
gi|325994547|gb|EGD52972.1| sun protein [Thermoanaerobacter ethanolicus JW 200]
gi|392292597|gb|EIW01041.1| ribosomal RNA small subunit methyltransferase RsmB
[Thermoanaerobacter siderophilus SR4]
Length = 444
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 128/247 (51%), Gaps = 40/247 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ + G VLD+CAAPG K THIA LM ++G +IA D R+ ++E
Sbjct: 232 IQDEASMLVSKTLNPKEGDTVLDVCAAPGGKTTHIAQLMKNSGEVIAFDLHPHRLELIKE 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
K+L +++++T V+DST +N E D++L D PC+G G ++P
Sbjct: 292 NCKRLGITNVKTEVFDSTFVNEKYL----------EKADKVLADVPCTGIGIIRKKP--- 338
Query: 186 NANSFLNLDKKIKSYANIQ-KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
D K+K+Y + +L++A Y+ + +KK G LVY TC++ EEN
Sbjct: 339 --------DIKLKNYTRKEISELIEAQYKILD----SSSKYVKKGGFLVYSTCTIGKEEN 386
Query: 245 EAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
+ VI L HP+ +LV ++ GL+ +E + +Q P + D GF
Sbjct: 387 QNVIMKFLKEHPDFKLVDIKAEMP-SGLS---IETDSLGYVQ-----TTPLEHEID--GF 435
Query: 305 FICKLRK 311
FI KL++
Sbjct: 436 FISKLKR 442
>gi|281412717|ref|YP_003346796.1| sun protein [Thermotoga naphthophila RKU-10]
gi|281373820|gb|ADA67382.1| sun protein [Thermotoga naphthophila RKU-10]
Length = 431
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/250 (30%), Positives = 129/250 (51%), Gaps = 34/250 (13%)
Query: 62 LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKP 121
+ + +Q S L +++++PG +VLD CAAPG K T IA LM D G ++A+D S+
Sbjct: 214 IKDGLASVQGESSQLVPFFMELKPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISRE 273
Query: 122 RVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQR 181
+ +E+ K+L+LSSI+T + D R+ Q ++FDRIL+DAPC+ G
Sbjct: 274 KTQLVEKHAKRLKLSSIETKIADVERLTEYVQ----------DTFDRILVDAPCTSLGTA 323
Query: 182 PMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSV 241
+N + K ++ IQ +++Q WQ LL+K GIL+Y TC+++
Sbjct: 324 RNHPEVLRRVN-KEDFKKFSEIQLRMVQQA--------WQ---LLEKGGILLYSTCTVTK 371
Query: 242 EENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDT 301
EEN V+ ++ + E++ ++ K+ E E + +G ++P + T
Sbjct: 372 EENTEVVKRFVYEQKDAEVIDIRDKM-------KEFEVE--GIWDGYGFLMLPDETIT-- 420
Query: 302 IGFFICKLRK 311
F+I LRK
Sbjct: 421 -PFYISVLRK 429
>gi|387927084|ref|ZP_10129763.1| 16S rRNA methyltransferase B [Bacillus methanolicus PB1]
gi|387589228|gb|EIJ81548.1| 16S rRNA methyltransferase B [Bacillus methanolicus PB1]
Length = 446
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/255 (32%), Positives = 129/255 (50%), Gaps = 38/255 (14%)
Query: 61 ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSK 120
A + + +Q+ S+L + L+++ VLD CAAPG K THIA +N TG +I+LD
Sbjct: 226 AFKNGLITIQDESSMLVAYALNIEENNTVLDACAAPGGKSTHIAERLNKTGKVISLDLHD 285
Query: 121 PRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG- 179
+V + ++L L++I+ DS + ESFDRILLDAPCSG G
Sbjct: 286 HKVKLIGIAAERLGLNNIEAKALDSRFVPEH---------FAAESFDRILLDAPCSGLGV 336
Query: 180 --QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC 237
++P + +++ I +Q+ LL +V PLLKK GILVY TC
Sbjct: 337 MRRKPDI----KYTKMEEDIYKLKQVQQDLLNSV-----------APLLKKGGILVYSTC 381
Query: 238 SLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR 297
++ EEN+ V+ L+R+ E +TL + + + + ++ F ++P +
Sbjct: 382 TIEKEENQEVVESFLNRNDLFEGDETLKERMPEAV---------KPLVDNFMLQILPQNF 432
Query: 298 NTDTIGFFICKLRKK 312
+D GF+I LRKK
Sbjct: 433 GSD--GFYIACLRKK 445
>gi|121719340|ref|XP_001276369.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Aspergillus clavatus NRRL 1]
gi|119404567|gb|EAW14943.1| nucleolar RNA methyltransferase (Nop2), putative [Aspergillus
clavatus NRRL 1]
Length = 755
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 99/303 (32%), Positives = 137/303 (45%), Gaps = 73/303 (24%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +S++ L P LAGHY L QP +
Sbjct: 326 LINRGVVLEPVGKWSKVGLQVFESAV-PLGATPEYLAGHYILQAASSFLPVMALAPQPNE 384
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM AAPG K T+I+ LM +TG ++A D SKPR L I +L + D+
Sbjct: 385 RVLDMAAAPGGKTTYISALMRNTGCVVANDASKPRAKGLIGNIHRLGCKNTIVTNLDA-- 442
Query: 148 INTSSQIDIERMKLQKE--SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYAN--- 202
R K FDR+LLDAPC+G G ++ D +K+ N
Sbjct: 443 ----------RTAFPKALGGFDRVLLDAPCTGTG----------VISKDPSVKTSKNERD 482
Query: 203 ------IQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHP 256
+Q+ LL A V G G +VY TCS++VEENEAV+ ++L + P
Sbjct: 483 FLAIPHMQRNLLLAAIDSVDHTSKTG-------GYVVYSTCSVTVEENEAVVQYVLRKRP 535
Query: 257 EVELVQT-LPQLGMKGLAHKDLEAEDQAVM-QRFGPPLIPTDR------NTDTIGFFICK 308
V+LV T L G G A M ++F P + T R N D GFF+ K
Sbjct: 536 NVKLVDTGLGDFGTPGFT---------AYMGKKFDPKMTLTRRYFPHRENVD--GFFVSK 584
Query: 309 LRK 311
+K
Sbjct: 585 FKK 587
>gi|346322970|gb|EGX92568.1| tRNA (cytosine-5-)-methyltransferase NCL1 [Cordyceps militaris
CM01]
Length = 633
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 94/296 (31%), Positives = 134/296 (45%), Gaps = 51/296 (17%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +SS+ L P LAGHY L QPG+
Sbjct: 288 LINRGVTLEPVGKWSKVGLQVFESSI-PLGATPEYLAGHYILQAASSFLPVMALSPQPGE 346
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM AAPG K TH A +M +TG ++A D +K R L I +L ++ YD+
Sbjct: 347 RVLDMAAAPGGKTTHCAAMMKNTGVIVANDPNKARAKGLIGNIHRLGAKNVIVCSYDAR- 405
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKL 207
+ R+ FDR+LLDAPCSG G + + +K + + +
Sbjct: 406 -------EFPRV---MGGFDRVLLDAPCSGTG----VIAKDPSVKTNKTERDFMTLPHTQ 451
Query: 208 LQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQL 267
Q + + + G G +VY TCS++VEENE V+A+ L R P + LV T
Sbjct: 452 KQLLLSAIDSVNHAGT-----GGYVVYSTCSVTVEENEQVVAYALSRRPNIRLVDTGLPF 506
Query: 268 GMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRKKYGEAP 317
G +G + + F P L T R N D GF++ K KK G P
Sbjct: 507 GKEGFT--------SYMGKTFDPSLKLTRRYYPHTYNVD--GFYVAKF-KKIGPTP 551
>gi|424779926|ref|ZP_18206812.1| Ribosomal RNA small subunit methyltransferase B [Catellicoccus
marimammalium M35/04/3]
gi|422843465|gb|EKU27902.1| Ribosomal RNA small subunit methyltransferase B [Catellicoccus
marimammalium M35/04/3]
Length = 452
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/250 (34%), Positives = 126/250 (50%), Gaps = 46/250 (18%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDT--GTLIALDKSKPRVTKL 126
+Q+ S+L L V+P +VLD CAAPG K HIA ++ T G + ALD + + +
Sbjct: 240 IQDESSMLVAPALQVEPQHQVLDACAAPGGKTGHIASYLDATQGGKVTALDIHQHKCELI 299
Query: 127 EETIKKLQLSSIQTHVYDSTRINTSSQIDIERM--KLQKESFDRILLDAPCSGFG---QR 181
EET +L HV D T+ +D ++ KESFDRIL+DAPCSG G ++
Sbjct: 300 EETAARL-------HVTDRV---TAQTLDARKVGDTFAKESFDRILVDAPCSGLGLMRRK 349
Query: 182 PMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSV 241
P + S +L + + IQ ++L A P LK+ GI+VY TC+++
Sbjct: 350 PDIKYSKSITDLSR----LSTIQLQILNAC-----------APCLKQGGIMVYSTCTINK 394
Query: 242 EENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDT 301
EENEAV+ L HPE L+ P G + + A + G ++P +TD
Sbjct: 395 EENEAVVTQFLKEHPEFTLI---PVQGAESIP---------ASVHPLGVTILPHQYHTD- 441
Query: 302 IGFFICKLRK 311
GFFI L+K
Sbjct: 442 -GFFISCLQK 450
>gi|196007796|ref|XP_002113764.1| hypothetical protein TRIADDRAFT_26585 [Trichoplax adhaerens]
gi|190584168|gb|EDV24238.1| hypothetical protein TRIADDRAFT_26585 [Trichoplax adhaerens]
Length = 389
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 137/292 (46%), Gaps = 54/292 (18%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV ++ S+V + DS + I P LAGHY L QP +
Sbjct: 105 LINRGVNLDPIGEWSKVGLIVFDSPVPIGAT-PEYLAGHYMLQGASSMLPVMALAAQPNE 163
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
KVLDMC+APG K T+IA LM +TG ++A D +K R L I +L + + T V
Sbjct: 164 KVLDMCSAPGGKTTYIAALMKNTGMIVANDVNKERCKALTANIHRLGV--VNTIVCSENG 221
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFG--QRPMFYNANSFLNLDKKIKSYANIQK 205
+ FDR+LLDAPCSG G + +N ++K I ++IQK
Sbjct: 222 RQFPKIVG---------GFDRVLLDAPCSGTGVISKDASVKSNK---VEKDILRCSHIQK 269
Query: 206 KLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLP 265
+LL + V G G +VYCTCS+ VEE+E V+ + L R V+LV T
Sbjct: 270 ELLLSAIDSVDARSSTG-------GYIVYCTCSIMVEEDEWVVDYALKRR-SVKLVSTGL 321
Query: 266 QLGMKGLAHKDLEAEDQAVMQRFGPPL------IPTDRNTDTIGFFICKLRK 311
+ G +G + +RF P L P + N D GFF+ K +K
Sbjct: 322 EFGREGFT--------KFKERRFHPTLKLTRRYYPHEHNMD--GFFVAKFKK 363
>gi|346315319|ref|ZP_08856834.1| ribosomal RNA small subunit methyltransferase B
[Erysipelotrichaceae bacterium 2_2_44A]
gi|345904847|gb|EGX74590.1| ribosomal RNA small subunit methyltransferase B
[Erysipelotrichaceae bacterium 2_2_44A]
Length = 415
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 110/198 (55%), Gaps = 30/198 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S L Y+D QP +++LD+C+APG K HIA M D G+++ D RV ++
Sbjct: 221 IQDEVSQLVAQYVDPQPQERILDVCSAPGTKACHIAERMGDKGSIVCGDIHAHRVELIKN 280
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG----QRPMF 184
++LQL SIQ V D+T + +++ E FDR+L D PCSG+G + +
Sbjct: 281 GARRLQLQSIQAQVMDATSLK----------EIEGEMFDRVLCDVPCSGYGVLARKSDIK 330
Query: 185 YNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
Y+A S ++D I +Q+++LQ+ + V KDGILVY TC+L+ +EN
Sbjct: 331 YHAKS-TDMDTLIP----LQQQILQSASKHVV-----------KDGILVYSTCTLNKKEN 374
Query: 245 EAVIAWILHRHPEVELVQ 262
E +A L +H E E +Q
Sbjct: 375 EKQVAAFLAQHEEFECLQ 392
>gi|167540287|ref|XP_001741734.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165893617|gb|EDR21802.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 505
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 144/298 (48%), Gaps = 61/298 (20%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV V++ S+ V DS + I P LAG Y L Q
Sbjct: 239 AQKLINRGVNVDMIE-WSKSGLVVYDSQVPIGAT-PEYLAGQYILQSSSSWVSVIALAPQ 296
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
P +K+LDMCAAPG K THIA LM DTG L+A D SK R+ + + +L +++ YD
Sbjct: 297 PNEKILDMCAAPGGKTTHIAALMKDTGILVANDISKDRLKAVIGNVHRLGITNTIITNYD 356
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK---IKSYA 201
E K+ + FDR+L+DAPC+G G + ++ + L K IK
Sbjct: 357 GH----------EFPKVMGQ-FDRVLVDAPCTGLG----IISRDAAVKLSKSEQDIKDCT 401
Query: 202 NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
IQK+L+ V+ P K G +VY TCS++VEENEAVI + L + V
Sbjct: 402 RIQKELILHAIDSVN-------PKSKTGGYVVYSTCSITVEENEAVIDYALKKRN----V 450
Query: 262 QTLPQLGMKGLAHKDLEAEDQAVMQ---RFGPPL------IPTDRNTDTIGFFICKLR 310
+ +P +A +D ED V RF P + P +N D GFF+CKL+
Sbjct: 451 KVVP------IALQDGVGEDGYVNHRQYRFHPSVKMAKRFFPHIQNMD--GFFVCKLK 500
>gi|126649674|ref|ZP_01721910.1| 16S rRNA m(5)C 967 methyltransferase [Bacillus sp. B14905]
gi|126593393|gb|EAZ87338.1| 16S rRNA m(5)C 967 methyltransferase [Bacillus sp. B14905]
Length = 453
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/251 (31%), Positives = 128/251 (50%), Gaps = 41/251 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S++ + L+ PG +VLDMCAAPG K TH+A +M + G+++A D ++ ++
Sbjct: 240 IQDESSMIPANVLNPSPGMRVLDMCAAPGGKTTHLAEIMKNEGSILATDLHPHKLDLIDH 299
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
++L L I+T D + LQ ES+D +L+DAPCSG G ++P
Sbjct: 300 NTERLGLDIIETAPIDGRKAPEF---------LQAESYDAVLVDAPCSGLGVMRRKPDI- 349
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ ++ +++ IQ LL A + +LK +G LVY TC++ +ENE
Sbjct: 350 ---KYTKREEDLENLQTIQLALLDAATK-----------VLKIEGKLVYSTCTVDKQENE 395
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
+ L HPE+E +Q ++ L K E + ++Q F P D +D GFF
Sbjct: 396 GTVKAFLATHPEMEAIQ------LESLPTKLAEKQANGMLQVF-----PQDFGSD--GFF 442
Query: 306 ICKLRKKYGEA 316
+ RKK GE+
Sbjct: 443 VAAFRKK-GES 452
>gi|163119428|ref|YP_078968.2| rRNA SAM-dependent methyltransferase RmsB [Bacillus licheniformis
DSM 13 = ATCC 14580]
gi|404489065|ref|YP_006713171.1| 16S rRNA methyltransferase B [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|423682119|ref|ZP_17656958.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus licheniformis
WX-02]
gi|52348056|gb|AAU40690.1| rRNA large subunit methyltransferase B [Bacillus licheniformis DSM
13 = ATCC 14580]
gi|145902935|gb|AAU23330.2| rRNA SAM-dependent methyltransferase RmsB [Bacillus licheniformis
DSM 13 = ATCC 14580]
gi|383438893|gb|EID46668.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus licheniformis
WX-02]
Length = 448
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/247 (32%), Positives = 116/247 (46%), Gaps = 38/247 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L + G+ VLD CAAPG K THI L+ DTG +++LD + +V ++E
Sbjct: 234 IQDESSMLVARALGPERGETVLDACAAPGGKSTHIGELLEDTGKVVSLDLHQHKVKLIKE 293
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
++ LS+I+ D+ + + E FDRIL+DAPCSGFG ++P
Sbjct: 294 AAGRIGLSNIEARALDARKAGEV---------FEPEQFDRILVDAPCSGFGVIRRKPDL- 343
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ + A IQ +L + PLLK G LVY TC++ ENE
Sbjct: 344 ---KYSKTPEDSARLAGIQLAILNEI-----------APLLKTGGTLVYSTCTMDPTENE 389
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
V+ L H E E TL + + A + Q + FG T GFF
Sbjct: 390 QVMHAFLEEHDEFEADPTLAERLPEKAAPYVKDGSIQILPHYFG-----------TDGFF 438
Query: 306 ICKLRKK 312
IC +RKK
Sbjct: 439 ICSMRKK 445
>gi|20807946|ref|NP_623117.1| tRNA and rRNA cytosine-C5-methylase [Thermoanaerobacter
tengcongensis MB4]
gi|254479565|ref|ZP_05092880.1| ribosomal RNA small subunit methyltransferase B [Carboxydibrachium
pacificum DSM 12653]
gi|20516516|gb|AAM24721.1| tRNA and rRNA cytosine-C5-methylases [Thermoanaerobacter
tengcongensis MB4]
gi|214034503|gb|EEB75262.1| ribosomal RNA small subunit methyltransferase B [Carboxydibrachium
pacificum DSM 12653]
Length = 443
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/254 (32%), Positives = 131/254 (51%), Gaps = 52/254 (20%)
Query: 70 QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEET 129
Q+ S+L L Q G+++LD+CAAPG K THI+ +M +TG ++A D R+ +EE
Sbjct: 232 QDEASMLVSRILSPQKGERILDVCAAPGGKTTHISQIMENTGEVVAFDLHPHRLKLIEEN 291
Query: 130 IKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYN 186
++L +++++T V+D+T +N S E DR+L D PC+G G ++P
Sbjct: 292 CRRLGVTNVKTEVFDATFVNESYL----------EKADRVLADVPCTGIGIIRKKP---- 337
Query: 187 ANSFLNLDKKIKSYANIQ-KKLLQAVYRFV---SLFDWQGIPLLKKDGILVYCTCSLSVE 242
D K+KSY + + L++ YR + SL+ +KK G+LVY TC++ E
Sbjct: 338 -------DIKLKSYDKEELRGLIERQYRILKSSSLY-------VKKGGVLVYSTCTIGRE 383
Query: 243 ENEAVIAWILHRHPEVE---LVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNT 299
EN+ VI L H E + + LP L +K ++ D +Q P +
Sbjct: 384 ENQEVIERFLKEHKNFEPADISEDLP-LNLK------VKTSDLGYIQ-----TTPLEHKI 431
Query: 300 DTIGFFICKLRKKY 313
D GFFI KL++ Y
Sbjct: 432 D--GFFIAKLKRIY 443
>gi|392566845|gb|EIW60020.1| NOL1/NOP2/sun family RNA met [Trametes versicolor FP-101664 SS1]
Length = 707
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/288 (30%), Positives = 137/288 (47%), Gaps = 47/288 (16%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E + V +SS+ I P LAGHY L QPG+
Sbjct: 377 LINRGVNLEPIGKWTNVGLQVFESSVPIGAT-PEYLAGHYMLQAASSFLPVIALGSQPGE 435
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM +APG K TH+A LM +TG + A D +K R L + +L ++ YD
Sbjct: 436 RVLDMASAPGGKTTHMAALMQNTGVVFANDANKARTKSLTANVHRLGCKNVVVCSYDGRE 495
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY---ANIQ 204
FDR+LLDAPCSG G + ++ + +K + + +++Q
Sbjct: 496 FPKVIG-----------GFDRVLLDAPCSGTG----VISKDASVKQNKSERDFTLLSHLQ 540
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL 264
K+L+ V G G LVY TCS++V+ENEAV+ + L + P V+LV T
Sbjct: 541 KQLILCAIDSVQADSKTG-------GFLVYSTCSVTVDENEAVVDYALRKRPHVKLVDTG 593
Query: 265 PQLGMKGL-AHKDLEAEDQ-AVMQRFGPPLIPTDRNTDTIGFFICKLR 310
+ G G +++ D+ ++ +RF P + D GF++ K +
Sbjct: 594 LEFGRPGFTSYRGKTFSDKLSLTRRFYPHVHNMD------GFYVAKFK 635
>gi|350265887|ref|YP_004877194.1| ribosomal RNA small subunit methyltransferase B [Bacillus subtilis
subsp. spizizenii TU-B-10]
gi|349598774|gb|AEP86562.1| ribosomal RNA small subunit methyltransferase B [Bacillus subtilis
subsp. spizizenii TU-B-10]
Length = 447
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 123/248 (49%), Gaps = 40/248 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L LD +PG+ VLD CAAPG K HI LM + G++ +LD K +V ++E
Sbjct: 235 IQDESSMLVARALDPKPGETVLDACAAPGGKSAHIGELMENKGSVTSLDLHKHKVKLIKE 294
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP-MF 184
+L L+ I D+ + + + FDRIL+DAPCSGFG ++P M
Sbjct: 295 AADRLGLTIIDAKTMDARKAGET---------FENGQFDRILVDAPCSGFGVIRRKPDMK 345
Query: 185 YNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
Y D + A IQ +L+ + PL+KK G LVY TC++ EN
Sbjct: 346 YTKKP----DDSAR-LAEIQLSILREI-----------APLVKKGGTLVYSTCTMDRTEN 389
Query: 245 EAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
+ VI + HP+ E P L ++ K L + + ++ ++P TD GF
Sbjct: 390 DEVIHAFIQEHPDFE-----PDLSLE----KRLPEKVRPFVRDGRLQILPHYFGTD--GF 438
Query: 305 FICKLRKK 312
FIC +RKK
Sbjct: 439 FICSMRKK 446
>gi|428221462|ref|YP_007105632.1| ribosomal RNA small subunit methyltransferase RsmB [Synechococcus
sp. PCC 7502]
gi|427994802|gb|AFY73497.1| ribosomal RNA small subunit methyltransferase RsmB [Synechococcus
sp. PCC 7502]
Length = 441
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 122/254 (48%), Gaps = 41/254 (16%)
Query: 60 VALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKS 119
V + +Q+ + L G LD QP + ++D CAAPG K THIA LM + G + A D++
Sbjct: 226 VGFTEGLWTVQDASAQLTGLILDPQPNETIIDACAAPGGKTTHIAELMGNQGLIYACDRT 285
Query: 120 KPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG 179
R+ KL++ +L LS +Q V DS E Q ++ DR+LLD PCSG G
Sbjct: 286 ASRLQKLQQNCDRLGLSIVQIRVGDSR----------EFADFQNQA-DRVLLDVPCSGLG 334
Query: 180 QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSL 239
+A N ++ K A +Q +LL +V K GILVY TC++
Sbjct: 335 TLHRHADARWRQNPEES-KKLAILQTELLNQAATWV-----------KNGGILVYSTCTI 382
Query: 240 SVEENEAVIAWILHRHPEVELV--QTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR 297
+ENEAVI L HP +LV PQL +H L+ ++P
Sbjct: 383 HPDENEAVIKQFLATHPHWKLVTPNIAPQLQSDS-SHPWLK-------------ILPHKS 428
Query: 298 NTDTIGFFICKLRK 311
N D GFFI KL+K
Sbjct: 429 NMD--GFFIAKLQK 440
>gi|410460745|ref|ZP_11314418.1| 16S rRNA methyltransferase B [Bacillus azotoformans LMG 9581]
gi|409926675|gb|EKN63831.1| 16S rRNA methyltransferase B [Bacillus azotoformans LMG 9581]
Length = 446
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 118/247 (47%), Gaps = 38/247 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L Q G KVLD CAAPG K THIA L+ + G +I++D +V +EE
Sbjct: 234 IQDESSMLVARALGPQKGDKVLDSCAAPGGKTTHIAELLGNDGKVISVDLHPHKVKLIEE 293
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
+K+L+L++++T V DS + E FDRIL+DAPCSGFG ++P
Sbjct: 294 QVKRLKLTNVETLVSDSRHLQEH---------FNSEEFDRILVDAPCSGFGVIRRKPDIK 344
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ I A IQ +L +V PLLK G LVY TC++ EEN
Sbjct: 345 YSKKL----DDIGQLAAIQLSILNSV-----------APLLKNGGTLVYSTCTIDQEENA 389
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
AV L + E + +TL + L + Q + FG T GFF
Sbjct: 390 AVAERFLAENKEFIVDETLIDRMPEQLKPYVQNGQVQILPHYFG-----------TDGFF 438
Query: 306 ICKLRKK 312
I RK+
Sbjct: 439 IASFRKQ 445
>gi|261327715|emb|CBH10692.1| nucleolar protein, putative [Trypanosoma brucei gambiense DAL972]
Length = 579
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 94/282 (33%), Positives = 139/282 (49%), Gaps = 44/282 (15%)
Query: 44 RGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQKVL 90
RG+ VE S+V +S++ I + LAGHY L Q ++VL
Sbjct: 257 RGMNVEPLEKWSKVGLQVFESNVPISGTV-EYLAGHYMLQSAVSFLPVMALAPQINERVL 315
Query: 91 DMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINT 150
DM AAPG K T+IA LM +TG + A D S+PR L +++L +++ YD
Sbjct: 316 DMAAAPGGKTTYIAQLMKNTGVIFANDVSEPRTKSLNANLQRLGVTNTVVTNYDG----- 370
Query: 151 SSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQA 210
+ E++ ++FDRILLDAPC+G G ++ DK IK+ + Q + +Q
Sbjct: 371 ---VGFEKV---MKNFDRILLDAPCTGSG----------IISRDKSIKT--SKQYEDVQR 412
Query: 211 VYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMK 270
+ I ++ G +VY TCS VEENEAV+ ++LHR +V +V+ G
Sbjct: 413 ASQLQRSLLLSAIDAVRVGGYIVYSTCSFLVEENEAVVDFVLHRR-DVAIVEAGLPFGRP 471
Query: 271 GLA-HKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
GL ++ D+ R L P N D GFF+CKL+K
Sbjct: 472 GLTKYRHHRFHDKLQNAR---RLFPHVHNMD--GFFVCKLKK 508
>gi|375309204|ref|ZP_09774485.1| ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Paenibacillus sp.
Aloe-11]
gi|375078513|gb|EHS56740.1| ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Paenibacillus sp.
Aloe-11]
Length = 471
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 129/260 (49%), Gaps = 42/260 (16%)
Query: 59 NVALDS--SMGIL--QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLI 114
N+AL S + G+L Q+ S+L + +PG VLD CAAPG K H+A LM D G +I
Sbjct: 245 NMALTSWYTDGLLSVQDESSMLVAEAVAPEPGMLVLDCCAAPGGKTAHMAELMKDQGRII 304
Query: 115 ALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAP 174
A D + ++E +L L +++T D+ + + SFDRILLDAP
Sbjct: 305 ANDLHAHKHHLIQEQADRLGLDAVETVTGDALELKD---------RYAPASFDRILLDAP 355
Query: 175 CSGFG---QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGI 231
CSGFG ++P + ++ ++ +Q +LL +V LLK GI
Sbjct: 356 CSGFGVIRRKPDL----RWSKTEQDVRDITQLQYELLDSV-----------AGLLKPGGI 400
Query: 232 LVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPP 291
LVY TC++ +ENE + L HPE EL + G A D+ + D QR
Sbjct: 401 LVYSTCTIEPDENEGQLTRFLSEHPEYELAE--------GHAFPDV-SRDTKGAQRGSLQ 451
Query: 292 LIPTDRNTDTIGFFICKLRK 311
L+P ++D GF+I +LR+
Sbjct: 452 LLPQHFHSD--GFYIARLRR 469
>gi|332685780|ref|YP_004455554.1| ribosomal RNA small subunit methyltransferase B [Melissococcus
plutonius ATCC 35311]
gi|332369789|dbj|BAK20745.1| ribosomal RNA small subunit methyltransferase B [Melissococcus
plutonius ATCC 35311]
Length = 453
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/257 (33%), Positives = 127/257 (49%), Gaps = 56/257 (21%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDT--GTLIALDKSKPRVTKL 126
+Q+ S+LA L + +VLD CAAPG K THIA +N G +IALD ++ +
Sbjct: 241 IQDESSMLAAPTLQIDESNQVLDACAAPGGKTTHIATFLNQQKQGKIIALDIHDHKLKLI 300
Query: 127 EETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK-------ESFDRILLDAPCSGFG 179
+E ++Q+SSI I +E++ +K E FDRIL+DAPCSG G
Sbjct: 301 KENAVRMQVSSI---------------IKLEKLDARKVKEVYPSEYFDRILVDAPCSGLG 345
Query: 180 ---QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT 236
++P + + IK A IQ++++++V +P LKK GIL Y T
Sbjct: 346 LMRRKPDIKYRKTL----QDIKKLAKIQEEIIESV-----------VPTLKKGGILTYST 390
Query: 237 CSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTD 296
C+++ EEN+ VI L +HPE + + + G E DQ + L P
Sbjct: 391 CTITQEENQHVIITFLKKHPEFKKIDII------GNEKVSAEVRDQML------TLYPHR 438
Query: 297 RNTDTIGFFICKLRKKY 313
TD GFFIC ++K Y
Sbjct: 439 WQTD--GFFICCMQKVY 453
>gi|297544782|ref|YP_003677084.1| sun protein [Thermoanaerobacter mathranii subsp. mathranii str. A3]
gi|296842557|gb|ADH61073.1| sun protein [Thermoanaerobacter mathranii subsp. mathranii str. A3]
Length = 444
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 123/247 (49%), Gaps = 40/247 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G+ VLD+CAAPG K THIA LM +TG ++A D R+ ++E
Sbjct: 232 IQDEASMLVSKILNPNEGETVLDVCAAPGGKTTHIAQLMKNTGNVVAFDLHPHRLELIKE 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
K+L +++++ +DST +N E D++L D PC+G G ++P
Sbjct: 292 NCKRLGITNVKAEAFDSTFVNDKYL----------EKADKVLADVPCTGIGIIRKKP--- 338
Query: 186 NANSFLNLDKKIKSYANIQ-KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
D K+K+Y + +L++ Y+ + +KKDG LVY TC++ VEEN
Sbjct: 339 --------DIKLKNYTKSEISQLVETQYKILD----SSSKYVKKDGFLVYSTCTIGVEEN 386
Query: 245 EAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
VI L HP LV ++ GL ++E +Q P + D GF
Sbjct: 387 HNVIMKFLKEHPNFRLVDIKAEMP-SGL---NIETASLGYIQ-----TTPLEHGID--GF 435
Query: 305 FICKLRK 311
FI KL++
Sbjct: 436 FISKLKR 442
>gi|289578506|ref|YP_003477133.1| sun protein [Thermoanaerobacter italicus Ab9]
gi|289528219|gb|ADD02571.1| sun protein [Thermoanaerobacter italicus Ab9]
Length = 444
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 123/247 (49%), Gaps = 40/247 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G+ VLD+CAAPG K THIA LM +TG ++A D R+ ++E
Sbjct: 232 IQDEASMLVSKILNPNEGETVLDVCAAPGGKTTHIAQLMKNTGNVVAFDLHPHRLELIKE 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
K+L +++++ +DST +N E D++L D PC+G G ++P
Sbjct: 292 NCKRLGITNVKAEAFDSTFVNDKYL----------EKADKVLADVPCTGIGIIRKKP--- 338
Query: 186 NANSFLNLDKKIKSYANIQ-KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
D K+K+Y + +L++ Y+ + +KKDG LVY TC++ VEEN
Sbjct: 339 --------DIKLKNYTKSEISQLVETQYKILD----SSSKYVKKDGFLVYSTCTIGVEEN 386
Query: 245 EAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
VI L HP LV ++ GL ++E +Q P + D GF
Sbjct: 387 HNVIMKFLKEHPNFRLVDIKAEMP-SGL---NIETASLGYIQ-----TTPLEHGID--GF 435
Query: 305 FICKLRK 311
FI KL++
Sbjct: 436 FISKLKR 442
>gi|319646043|ref|ZP_08000273.1| YloM protein [Bacillus sp. BT1B_CT2]
gi|317391793|gb|EFV72590.1| YloM protein [Bacillus sp. BT1B_CT2]
Length = 444
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/247 (32%), Positives = 116/247 (46%), Gaps = 38/247 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L + G+ VLD CAAPG K THI L+ DTG +++LD + +V ++E
Sbjct: 230 IQDESSMLVARALGPERGETVLDACAAPGGKSTHIGELLEDTGKVVSLDLHQHKVKLIKE 289
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
++ LS+I+ D+ + + E FDRIL+DAPCSGFG ++P
Sbjct: 290 AAGRIGLSNIEARALDARKAGEV---------FEPEQFDRILVDAPCSGFGVIRRKPDL- 339
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ + A IQ +L + PLLK G LVY TC++ ENE
Sbjct: 340 ---KYSKTPEDSARLAGIQLAILNEI-----------APLLKTGGTLVYSTCTMDPTENE 385
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
V+ L H E E TL + + A + Q + FG T GFF
Sbjct: 386 QVMHAFLEEHDEFEADPTLAERLPEKAAPYVKDGSIQILPHYFG-----------TDGFF 434
Query: 306 ICKLRKK 312
IC +RKK
Sbjct: 435 ICSMRKK 441
>gi|149182346|ref|ZP_01860824.1| sun protein [Bacillus sp. SG-1]
gi|148849965|gb|EDL64137.1| sun protein [Bacillus sp. SG-1]
Length = 445
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 102/204 (50%), Gaps = 27/204 (13%)
Query: 59 NVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDK 118
A + +Q+ S+L GH LDV VLD CAAPG K THIA LM G + ALD
Sbjct: 225 TAAFKDGLLTIQDESSMLVGHSLDVHEDFTVLDSCAAPGGKTTHIAQLMEGKGKVFALDL 284
Query: 119 SKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGF 178
K ++ + E +L L +I++ +DS R ESFDRIL+DAPCSG
Sbjct: 285 HKHKIKLINENASRLGLGNIESKAHDSRRAGEL---------FAAESFDRILVDAPCSGL 335
Query: 179 G---QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC 235
G ++P + + ++S IQ ++L+AV PLLKK G+LVY
Sbjct: 336 GVLRRKPDI----KYTKKESDLESLQTIQLQILEAVS-----------PLLKKGGLLVYS 380
Query: 236 TCSLSVEENEAVIAWILHRHPEVE 259
TC++ EN+ + L + E +
Sbjct: 381 TCTVDRNENQGTVKEFLDGNKEFQ 404
>gi|299753547|ref|XP_001833346.2| tRNA (cytosine-5-)-methyltransferase NSUN2 [Coprinopsis cinerea
okayama7#130]
gi|298410351|gb|EAU88451.2| tRNA (cytosine-5-)-methyltransferase NSUN2 [Coprinopsis cinerea
okayama7#130]
Length = 576
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 122/260 (46%), Gaps = 54/260 (20%)
Query: 73 PSILAGHY-------------LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKS 119
P LAGHY L QP ++VLDM +APG K TH+A LM +TG + A D +
Sbjct: 283 PEYLAGHYMLQAASSFLPVIALSPQPNERVLDMASAPGGKTTHMAALMQNTGVIFANDAN 342
Query: 120 KPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG 179
K R L + +L ++ YD E K+ FDRILLDAPCSG G
Sbjct: 343 KARTKSLTANVHRLGCKNVVVCSYDGR----------EFPKVMG-GFDRILLDAPCSGTG 391
Query: 180 QRPMFYNANSFLNLDKKIKSY---ANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT 236
+ +S + ++K + + +++QK+L+ VS P K G VY T
Sbjct: 392 ----VISKDSSVKVNKSDRDFILLSHLQKQLILCAIDSVS-------PDSKTGGYFVYST 440
Query: 237 CSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTD 296
CS++VEENEAV+ + L + P V LV T G +G Q + F P + T
Sbjct: 441 CSVTVEENEAVVDYALKKRPNVRLVDTGLSFGREGFT--------QYRGKTFHPSVKLTR 492
Query: 297 R------NTDTIGFFICKLR 310
R N D GF++ K +
Sbjct: 493 RFYPHVHNMD--GFYVAKFK 510
>gi|327355493|gb|EGE84350.1| nucleolar RNA methyltransferase [Ajellomyces dermatitidis ATCC
18188]
Length = 692
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 98/298 (32%), Positives = 142/298 (47%), Gaps = 50/298 (16%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +S++ L P LAGHY L QP +
Sbjct: 304 LINRGVVLEPVGKWSKVGLQVFESAV-PLGATPEYLAGHYILQAASSFLPVMALAPQPNE 362
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM AAPG K T+I+ LM +TG ++A D SKPR L I +L + D+
Sbjct: 363 RVLDMAAAPGGKTTYISALMRNTGCVLANDASKPRAKGLIGNIHRLGCKNTIVSNLDA-- 420
Query: 148 INTSSQIDIERMKLQK--ESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYAN 202
R K FDRILLDAPCSG G + P + + ++ + +
Sbjct: 421 ----------REAFPKILGGFDRILLDAPCSGTGVISKDPSIKTSKT----ERDFLALPH 466
Query: 203 IQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQ 262
+QK+LL A G G +VY TCS++VEENE V+ + L + P V++V
Sbjct: 467 MQKQLLLAAIDSTDHASKTG-------GYIVYSTCSVTVEENEGVVQYALRKRPNVKIVD 519
Query: 263 T-LPQLGMKGL-AHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKKYGEAPE 318
T L G G ++ + +D+ + R P N D GF++CKL KK G +P+
Sbjct: 520 TGLGNFGSPGFKSYMGKKFDDKMPLTRR---YYPHRENVD--GFYVCKL-KKMGPSPK 571
>gi|261200155|ref|XP_002626478.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Ajellomyces dermatitidis
SLH14081]
gi|239593550|gb|EEQ76131.1| nucleolar RNA methyltransferase [Ajellomyces dermatitidis SLH14081]
gi|239607570|gb|EEQ84557.1| nucleolar RNA methyltransferase [Ajellomyces dermatitidis ER-3]
Length = 654
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 98/298 (32%), Positives = 142/298 (47%), Gaps = 50/298 (16%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +S++ L P LAGHY L QP +
Sbjct: 304 LINRGVVLEPVGKWSKVGLQVFESAV-PLGATPEYLAGHYILQAASSFLPVMALAPQPNE 362
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM AAPG K T+I+ LM +TG ++A D SKPR L I +L + D+
Sbjct: 363 RVLDMAAAPGGKTTYISALMRNTGCVLANDASKPRAKGLIGNIHRLGCKNTIVSNLDA-- 420
Query: 148 INTSSQIDIERMKLQK--ESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYAN 202
R K FDRILLDAPCSG G + P + + ++ + +
Sbjct: 421 ----------REAFPKILGGFDRILLDAPCSGTGVISKDPSIKTSKT----ERDFLALPH 466
Query: 203 IQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQ 262
+QK+LL A G G +VY TCS++VEENE V+ + L + P V++V
Sbjct: 467 MQKQLLLAAIDSTDHASKTG-------GYIVYSTCSVTVEENEGVVQYALRKRPNVKIVD 519
Query: 263 T-LPQLGMKGL-AHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKKYGEAPE 318
T L G G ++ + +D+ + R P N D GF++CKL KK G +P+
Sbjct: 520 TGLGNFGSPGFKSYMGKKFDDKMPLTRR---YYPHRENVD--GFYVCKL-KKMGPSPK 571
>gi|443310715|ref|ZP_21040357.1| ribosomal RNA small subunit methyltransferase RsmB [Synechocystis
sp. PCC 7509]
gi|442779240|gb|ELR89491.1| ribosomal RNA small subunit methyltransferase RsmB [Synechocystis
sp. PCC 7509]
Length = 446
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/261 (31%), Positives = 124/261 (47%), Gaps = 45/261 (17%)
Query: 11 LWLDRAGFVSVLRLPA--RQRPSLSIYCYAL-------DILFRGVAVEITNVLSQVPNVA 61
+WL++ GF + +L Q P L + L + + ++++ V +
Sbjct: 158 VWLEQFGFTATEQLCQWLNQPPKLDLRVNPLLSSIEKVETALQETGIDVSRVPYLPQALR 217
Query: 62 LDSSMGILQNLPSI-------------LAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMN 108
++ S G +QNLP L H LD Q G+ ++D CAAPG K THIA LM
Sbjct: 218 INGSTGAIQNLPGFNDGWWTVQDSSAQLVSHLLDPQSGEFIIDACAAPGGKTTHIAELMG 277
Query: 109 DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDR 168
D GT+ A D++ R+ KL++ K+LQL SIQ V DS ID DR
Sbjct: 278 DQGTIWACDRTASRLRKLQQNTKRLQLKSIQIQVGDSRHFEQF--ID---------KCDR 326
Query: 169 ILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKK 228
+LLD PCSG G +A + + I+ + +Q +L+ QG +K
Sbjct: 327 LLLDVPCSGLGTLNRHADAR-WRQTPQSIQELSLLQAELIS-----------QGALFVKP 374
Query: 229 DGILVYCTCSLSVEENEAVIA 249
G++VY TC+L +ENE +IA
Sbjct: 375 GGVMVYSTCTLHPQENENIIA 395
>gi|337287877|ref|YP_004627349.1| sun protein [Thermodesulfobacterium sp. OPB45]
gi|334901615|gb|AEH22421.1| sun protein [Thermodesulfobacterium geofontis OPF15]
Length = 460
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 104/325 (32%), Positives = 144/325 (44%), Gaps = 55/325 (16%)
Query: 12 WLDRAGFVSV--LRLPARQRPSLSIYCYALDI-------LFRGVAVEITNVLSQVP-NVA 61
WLDR GF L L + +RP L I L + + V P +
Sbjct: 164 WLDRFGFEETEKLLLASNERPPLVIRVNILKVSRDNFLTFLQKEEVPSAKACPYSPAGII 223
Query: 62 LDSSMG-------------ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMN 108
LD G +Q+ S L L+ +PG+K+LD CA G K THIA LM
Sbjct: 224 LDGFRGKVTELKAYHFGWISVQDSASQLVTFLLNPKPGEKILDACAGVGGKTTHIAELMQ 283
Query: 109 DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDR 168
+ G + A D R+ KL+E ++L L + D E KL FDR
Sbjct: 284 NRGIIWAFDLYPWRLEKLKENFQRLGLKEPKVFQGDVVE---------ELPKLNAPLFDR 334
Query: 169 ILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGI-PLLK 227
IL+DAPC+G G + + +K + + NI +K L+ + +G+ P LK
Sbjct: 335 ILIDAPCTGTG----VIRKHPDIKWARKEEDFINIPEKQLRLL---------EGLSPFLK 381
Query: 228 KDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMK-GLAHKDLEAEDQAVMQ 286
GI+VY TCSL EENE VI L +HPE E+ L L G + +DL E+ ++
Sbjct: 382 PKGIMVYATCSLEPEENEKVIEKFLKKHPEFEIENPLNVLEKTCGPSVRDL-IENNLYLK 440
Query: 287 RFGPPLIPTDRNTDTIGFFICKLRK 311
+ P N D GFF +LRK
Sbjct: 441 TY-----PHKHNMD--GFFAVRLRK 458
>gi|17228315|ref|NP_484863.1| sun protein [Nostoc sp. PCC 7120]
gi|17130165|dbj|BAB72777.1| sun protein [Nostoc sp. PCC 7120]
Length = 449
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/254 (32%), Positives = 119/254 (46%), Gaps = 56/254 (22%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
I+Q+ + L GH LD QPG+ ++D CAAPG K THIA LM D G + A D++ R+ KL+
Sbjct: 237 IVQDASAQLVGHLLDPQPGEVIIDACAAPGGKTTHIAELMKDEGKVWAGDRTASRLRKLK 296
Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNA 187
E ++L L SI+ + DS N D+ DR+LLDAPCSG G +A
Sbjct: 297 ENAQRLNLHSIEICIGDSR--NLPQFYDVA---------DRVLLDAPCSGLGTLHRHADA 345
Query: 188 NSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
+ + ++ + +QK+LL +FV K G+LVY TC+L ENE V
Sbjct: 346 R-WRQTPESVQELSMLQKELLAHTSKFV-----------KVGGVLVYATCTLHPAENEEV 393
Query: 248 IAWILHRHPEVEL----------VQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR 297
I + + + ++ T PQ +K H
Sbjct: 394 ITEFVAGNSDWQIEPPRPDSPYSAYTTPQGWLKVWPH----------------------- 430
Query: 298 NTDTIGFFICKLRK 311
N D GFF+ +LRK
Sbjct: 431 NQDMDGFFMVRLRK 444
>gi|237735904|ref|ZP_04566385.1| SUN protein [Mollicutes bacterium D7]
gi|374626103|ref|ZP_09698517.1| ribosomal RNA small subunit methyltransferase B [Coprobacillus sp.
8_2_54BFAA]
gi|229381649|gb|EEO31740.1| SUN protein [Coprobacillus sp. D7]
gi|373914629|gb|EHQ46444.1| ribosomal RNA small subunit methyltransferase B [Coprobacillus sp.
8_2_54BFAA]
Length = 417
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 129/246 (52%), Gaps = 56/246 (22%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S L LD QP VLDMC APG+K TH+A +MN+ G +IA D + ++ +E
Sbjct: 223 IQDESSQLIAPLLDPQPTDLVLDMCCAPGSKTTHLAAIMNNQGKIIAYDLFEHKIKLVEA 282
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
+K+L +++++ HV D+T + + K +ESFD+ILLDAPCSG G ++P
Sbjct: 283 NLKRLGVNNVELHVGDATLL---------KEKYSEESFDKILLDAPCSGLGVMKRKPEIK 333
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+S + + +Q KLL Y LLKK+G +VY TC+++ +ENE
Sbjct: 334 YHDS-----GAMDTIIPLQAKLLDNAYY-----------LLKKNGKMVYSTCTINKKENE 377
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
+I L ++P+++++ E++ ++ P + D+ GF+
Sbjct: 378 QMIKQFLDKYPDMKII------------------EEKKIL-----PYV-----YDSDGFY 409
Query: 306 ICKLRK 311
+CKL K
Sbjct: 410 MCKLEK 415
>gi|167757026|ref|ZP_02429153.1| hypothetical protein CLORAM_02575 [Clostridium ramosum DSM 1402]
gi|167703201|gb|EDS17780.1| ribosomal RNA small subunit methyltransferase B [Clostridium
ramosum DSM 1402]
Length = 417
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 129/246 (52%), Gaps = 56/246 (22%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S L LD QP VLDMC APG+K TH+A +MN+ G +IA D + ++ +E
Sbjct: 223 IQDESSQLIAPLLDPQPTDLVLDMCCAPGSKTTHLAAIMNNQGKIIAYDLFEHKIKLVEA 282
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
+K+L +++++ HV D+T + + K +ESFD+ILLDAPCSG G ++P
Sbjct: 283 NLKRLGVNNVELHVGDATLL---------KEKYSEESFDKILLDAPCSGLGVMKRKPEIK 333
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+S + + +Q KLL Y LLKK+G +VY TC+++ +ENE
Sbjct: 334 YHDS-----GAMDTIIPLQAKLLDNAYY-----------LLKKNGKMVYSTCTINKKENE 377
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
+I L ++P+++++ E++ ++ P + D+ GF+
Sbjct: 378 QMIKQFLDKYPDMKII------------------EEKKIL-----PYV-----YDSDGFY 409
Query: 306 ICKLRK 311
+CKL K
Sbjct: 410 MCKLEK 415
>gi|22297753|ref|NP_681000.1| RNA-binding protein [Thermosynechococcus elongatus BP-1]
gi|22293930|dbj|BAC07762.1| RNA-binding protein [Thermosynechococcus elongatus BP-1]
Length = 442
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/256 (33%), Positives = 116/256 (45%), Gaps = 51/256 (19%)
Query: 69 LQNLPSILAGHY-------------LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIA 115
+Q LP AGH+ LD QPG+ V+D CAAPG K THIA LM D G +IA
Sbjct: 223 MQELPGYAAGHWSVQDRAAQWVSHLLDPQPGEVVIDACAAPGGKTTHIAELMEDQGRVIA 282
Query: 116 LDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPC 175
D+S R+ KL + +L L SI+ H+ DS + + DR+LLDAPC
Sbjct: 283 CDRSPHRLRKLAQNRDRLGLKSIEIHILDSAAAGDFAAVG-----------DRVLLDAPC 331
Query: 176 SGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC 235
SG G +A + L +++ +Q +LL V ++V K G+LVY
Sbjct: 332 SGTGTLHRHADAR-WRPLKRRLGELLPLQAQLLATVSQWV-----------KPYGLLVYA 379
Query: 236 TCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPT 295
TCSL ENEA I L HP+ + P +K + Q
Sbjct: 380 TCSLEPAENEAQIQQFLAHHPQWHIEPPPPNFPLKAAPEGWITVWPQ------------- 426
Query: 296 DRNTDTIGFFICKLRK 311
D GFF+ +LR+
Sbjct: 427 --QQDMDGFFMVRLRR 440
>gi|171696268|ref|XP_001913058.1| hypothetical protein [Podospora anserina S mat+]
gi|170948376|emb|CAP60540.1| unnamed protein product [Podospora anserina S mat+]
Length = 747
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 98/291 (33%), Positives = 137/291 (47%), Gaps = 51/291 (17%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V DS++ L P LAGHY L Q +
Sbjct: 326 LINRGVTLEPVGKWSKVGLQVFDSNV-PLGATPEYLAGHYILQAASSFLPVMALCPQENE 384
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+ LDM +APG K TH+A LM +TG + A D SK R L I +L + + YD+
Sbjct: 385 RCLDMASAPGGKTTHMAALMKNTGVIFANDPSKARAKGLIGNIHRLGVRNTIVCNYDAR- 443
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANIQKK 206
+ R+ FDR+LLDAPCSG G + + + N D+K + ++QK+
Sbjct: 444 -------EFPRV---MGGFDRVLLDAPCSGTGV--IAKDPSVKTNRDEKDFQQLPHLQKQ 491
Query: 207 LLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQ 266
L+ A V+ G G LVY TCS++VEENE V+A+ L R P V LV+T
Sbjct: 492 LILAAIDSVNHASKTG-------GYLVYSTCSVAVEENEQVVAYALSRRPNVRLVETGLP 544
Query: 267 LGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
G +G + + F P L T R N D GFF+ K +K
Sbjct: 545 FGKEGFT--------SFMGKEFHPSLKLTRRYYPHLYNVD--GFFVAKFQK 585
>gi|403166005|ref|XP_003889974.1| hypothetical protein PGTG_21386 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375166030|gb|EHS63044.1| hypothetical protein PGTG_21386 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 715
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 95/295 (32%), Positives = 141/295 (47%), Gaps = 55/295 (18%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV +E S+V +SS+ I P LAGHY LD Q
Sbjct: 321 AQSLINRGVNLEPIGKWSKVGLQVFESSVPIGA-TPEYLAGHYMLQAASSFLPVIALDPQ 379
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
PG+K LDM AAPG K T ++ +M +TG L A D SK R L + ++ ++ +D
Sbjct: 380 PGEKCLDMSAAPGGKTTFMSAMMKNTGKLFANDSSKARCKSLMANVSRMGCHNVIISNHD 439
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKS---YA 201
+ D ++ F+R+LLDAPCSG G + ++ + +K K +
Sbjct: 440 AR--------DFPKVMG---GFNRVLLDAPCSGTG----VISKDASVKNNKSEKDLLLLS 484
Query: 202 NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
++QK+L+ + VS G G LVY TCS++VEENE+V+ + L + P V+LV
Sbjct: 485 HLQKQLILSAIDSVSPHSTNG-------GYLVYSTCSVTVEENESVVDYALKKRPNVKLV 537
Query: 262 QTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLR 310
+T G +G + + F P L T R N D GFF+ KL+
Sbjct: 538 ETGIGFGKEGFV--------RFRGKIFNPSLKMTRRFYPHVHNVD--GFFVAKLK 582
>gi|443652432|ref|ZP_21130849.1| ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa DIANCHI905]
gi|159030883|emb|CAO88564.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443334299|gb|ELS48818.1| ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa DIANCHI905]
Length = 446
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/266 (31%), Positives = 130/266 (48%), Gaps = 35/266 (13%)
Query: 5 QSQCYCLWLDRAGFVSVLRLPAR-QRPSLSIYCYALDILFRGV----AVEITNVLSQVPN 59
+++ C W +R+ + + P + R +L + +I F + A +T+ L +
Sbjct: 168 ETEQLCQWFNRSPDLDIRINPLKTSREALENELESANITFNHLKLPLACRLTSGLGNIER 227
Query: 60 V-ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDK 118
+ + LQ++ + L H LD QPG+ ++D CAAPG K THIA LM D G ++A D+
Sbjct: 228 LEGFRAGNYTLQDISAQLVTHLLDPQPGETIIDACAAPGGKTTHIAELMGDRGRILACDQ 287
Query: 119 SKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGF 178
+ R+ +LE IK+L L +I+ H+ DS I DR+L+DAPCSG
Sbjct: 288 TPSRLRQLEANIKRLDLKAIEIHLGDSRDRPQWCGI-----------ADRVLIDAPCSGL 336
Query: 179 G---QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC 235
G +RP + NL A Q +LL + +V K GILVY
Sbjct: 337 GTLHKRPDIRWRQTPENL----PVLAKRQGELLASAATWV-----------KPKGILVYA 381
Query: 236 TCSLSVEENEAVIAWILHRHPEVELV 261
TC+L+ ENE VI L HP+ ++
Sbjct: 382 TCTLNPLENERVIEQFLAAHPDWKMA 407
>gi|258571405|ref|XP_002544506.1| nucleolar protein NOP2 [Uncinocarpus reesii 1704]
gi|237904776|gb|EEP79177.1| nucleolar protein NOP2 [Uncinocarpus reesii 1704]
Length = 1027
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 95/300 (31%), Positives = 143/300 (47%), Gaps = 50/300 (16%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV +E S+V +S + L P LAGHY L Q
Sbjct: 276 AQALINRGVVLEPVGKWSKVGLQVFESPV-PLGATPEYLAGHYILQAASSFLPVMALAPQ 334
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
P +++LDM AAPG K T+++ LM +TG ++A D +K R L I +L + D
Sbjct: 335 PHERILDMAAAPGGKTTYMSALMRNTGCVMANDANKERAKGLIGNIHRLGCKNTIVTNLD 394
Query: 145 STRINTSSQIDIERMKLQKE--SFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKS 199
+ R K FDR+LLDAPCSG G + P + + ++ +
Sbjct: 395 A------------RTAFPKALGGFDRVLLDAPCSGTGVISKDPSVKTSKT----ERDFMA 438
Query: 200 YANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVE 259
+ QK+LL A + G G +VY TCS++VEENEAV+ ++L + P V
Sbjct: 439 IPHTQKQLLLAAIDSTNHASKTG-------GYIVYSTCSVAVEENEAVVQYVLRKRPNVR 491
Query: 260 LVQT-LPQLGMKGL-AHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKKYGEAP 317
+V T L G +G ++K + + + + R P N D GF++CKL KK+G +P
Sbjct: 492 IVDTGLGTFGSEGFKSYKGKQFDPKMALTR---RYFPHRENVD--GFYVCKL-KKFGPSP 545
>gi|425775228|gb|EKV13508.1| Nucleolar RNA methyltransferase (Nop2), putative [Penicillium
digitatum Pd1]
gi|425779664|gb|EKV17704.1| Nucleolar RNA methyltransferase (Nop2), putative [Penicillium
digitatum PHI26]
Length = 732
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 95/298 (31%), Positives = 139/298 (46%), Gaps = 63/298 (21%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +S + L P LAGHY L QP +
Sbjct: 303 LINRGVVLEPVGKWSKVGLQVFESPV-PLGATPEYLAGHYILQAASSFLPVMALAPQPNE 361
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM +APG K T+++ LM +TG ++A D SKPR L I +L + D+
Sbjct: 362 RVLDMASAPGGKTTYMSALMRNTGCVVANDASKPRAKGLIGNIHRLGCKNTIVTNMDA-- 419
Query: 148 INTSSQIDIERMKLQKE--SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYAN--- 202
R K FDR+LLDAPC+G G ++ D +K+ N
Sbjct: 420 ----------RTAFPKAMGGFDRVLLDAPCTGTG----------VISKDPGVKTSKNERD 459
Query: 203 ------IQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHP 256
+Q++LL A V G G +VY TCS++VEENEAV+ ++L + P
Sbjct: 460 FLAIPHMQRQLLLAAIDSVDHASKTG-------GYVVYSTCSVTVEENEAVVQYVLRKRP 512
Query: 257 EVELVQT-LPQLGMKGLAHKDLEAED--QAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
V++V T L G G ++ D A+ +R+ P N D GF++CKL+K
Sbjct: 513 NVKIVDTGLGNFGSPGFLSYMGKSFDPKMALTRRY----FPHRENVD--GFYVCKLKK 564
>gi|302691038|ref|XP_003035198.1| hypothetical protein SCHCODRAFT_84537 [Schizophyllum commune H4-8]
gi|300108894|gb|EFJ00296.1| hypothetical protein SCHCODRAFT_84537 [Schizophyllum commune H4-8]
Length = 422
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 137/293 (46%), Gaps = 51/293 (17%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV +E + V +SS+ I P LAGHY LD Q
Sbjct: 83 AQTLINRGVNLEPIGKWTNVGLQVFESSVPIGAT-PEYLAGHYMLQAASSFLPVIALDPQ 141
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
P ++VLDM +APG K THIA L+ +TG + A D +K R L + ++ ++ YD
Sbjct: 142 PHERVLDMASAPGGKTTHIAALLQNTGVVFANDANKQRTKSLTANVHRMGCKNVVVCSYD 201
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY---A 201
FDR+LLDAPCSG G + ++ + ++K + + A
Sbjct: 202 GREFPKVIG-----------GFDRVLLDAPCSGTG----VISKDASVKINKSERDFTLLA 246
Query: 202 NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
++QK+L+ V+ P K G +VY TCS++V+ENEAVI + L + P V+LV
Sbjct: 247 HLQKQLILCALDSVT-------PNSKTGGYVVYSTCSVTVDENEAVIDYALRKRPNVKLV 299
Query: 262 QTLPQLGMKGLAHKDLEAE----DQAVMQRFGPPLIPTDRNTDTIGFFICKLR 310
T + G A+ + + +RF P + D GFF+ K +
Sbjct: 300 DTGLEFGRP--AYTSFRGKTFHPSVGLARRFYPHVHNMD------GFFVAKFK 344
>gi|67479223|ref|XP_654993.1| Proliferating-cell nucleolar antigen p120 [Entamoeba histolytica
HM-1:IMSS]
gi|56472094|gb|EAL49607.1| Proliferating-cell nucleolar antigen p120, putative [Entamoeba
histolytica HM-1:IMSS]
Length = 495
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 106/317 (33%), Positives = 151/317 (47%), Gaps = 67/317 (21%)
Query: 19 VSVLRLPARQRPSLSIYCYALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAG 78
+ V L +R+R A ++ RGV V++ S+ V DS + I P LAG
Sbjct: 216 IRVNTLKSRRRE------LAQKLINRGVNVDMIE-WSKSGLVVYDSQVPIGAT-PEYLAG 267
Query: 79 HY-------------LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTK 125
Y L QP +K+LDMCAAPG K THIA LM DTG L+A D SK R+
Sbjct: 268 QYILQSSSSWVSVIALAPQPNEKILDMCAAPGGKTTHIAALMKDTGVLVANDISKDRLKA 327
Query: 126 LEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFY 185
+ + +L ++ +T I + ++ Q FDR+L+DAPC+G G
Sbjct: 328 VIGNVHRLGIT--------NTIITNCDGHEFPKVMGQ---FDRVLVDAPCTGLG----II 372
Query: 186 NANSFLNLDKK---IKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVE 242
+ ++ + L K IK IQK+L+ V+ P K G +VY TCS++VE
Sbjct: 373 SRDAAVKLSKSEQDIKDCTRIQKELILHAIDSVN-------PKSKTGGYVVYSTCSITVE 425
Query: 243 ENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQ---RFGPPL------I 293
ENEAVI + L + V+ +P +A +D ED V RF P +
Sbjct: 426 ENEAVIDYALKKRN----VKVVP------IALQDGVGEDGYVNHRQYRFHPSVKMAKRFF 475
Query: 294 PTDRNTDTIGFFICKLR 310
P +N D GFF+CKL+
Sbjct: 476 PHIQNMD--GFFVCKLK 490
>gi|365830316|ref|ZP_09371898.1| ribosomal RNA small subunit methyltransferase B [Coprobacillus sp.
3_3_56FAA]
gi|365263497|gb|EHM93327.1| ribosomal RNA small subunit methyltransferase B [Coprobacillus sp.
3_3_56FAA]
Length = 417
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 129/246 (52%), Gaps = 56/246 (22%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S L LD QP VLDMC APG+K TH+A +MN+ G +IA D + ++ +E
Sbjct: 223 IQDESSQLIAPLLDPQPTDLVLDMCCAPGSKTTHLAAIMNNQGKIIAYDLFEHKIKLVEA 282
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
+K+L +++++ HV D+T + + K +ESFD+ILLDAPCSG G ++P
Sbjct: 283 NLKRLGVNNVELHVGDATLL---------KEKYSEESFDKILLDAPCSGLGVMKRKPEIK 333
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+S + + +Q KLL Y LLKK+G ++Y TC+++ +ENE
Sbjct: 334 YHDS-----GAMDTIIPLQAKLLDNAYY-----------LLKKNGKMIYSTCTINKKENE 377
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
+I L ++P+++++ E++ ++ P + D+ GF+
Sbjct: 378 QMIKQFLDKYPDMKII------------------EEKKIL-----PYV-----YDSDGFY 409
Query: 306 ICKLRK 311
+CKL K
Sbjct: 410 MCKLEK 415
>gi|118581643|ref|YP_902893.1| sun protein [Pelobacter propionicus DSM 2379]
gi|118504353|gb|ABL00836.1| sun protein [Pelobacter propionicus DSM 2379]
Length = 452
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 115/215 (53%), Gaps = 26/215 (12%)
Query: 45 GVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIA 104
G+ VE + ++ +P + +Q+ S +AG LD +PG+++LD CAAPG K TH+A
Sbjct: 221 GILVEGRHQITSLP--GFHEGLFAVQDEASQMAGLLLDPRPGERILDACAAPGGKATHLA 278
Query: 105 LLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE 164
LMND G L+A+D S ++ ++E+ +L +S I+T D +N+++ +
Sbjct: 279 QLMNDRGELLAMDVSGVKLPLIQESAHRLGISIIRTRRADL--LNSAA--------FPVD 328
Query: 165 SFDRILLDAPCSGFGQRPMFYNANSFLNLD-KKIKSYANIQKKLLQAVYRFVSLFDWQGI 223
SFDR+LLDAPCSG G + N + L + + A Q+++ R
Sbjct: 329 SFDRVLLDAPCSGLGV--IRRNPEAKWRLRPEDLTRLAETQRRMFANAVR---------- 376
Query: 224 PLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEV 258
+LK G LVY TCS S EENEAV+ L R V
Sbjct: 377 -MLKPGGRLVYSTCSTSREENEAVLHAFLSRQDGV 410
>gi|422304597|ref|ZP_16391940.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9806]
gi|389790263|emb|CCI13866.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9806]
Length = 446
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 97/318 (30%), Positives = 151/318 (47%), Gaps = 50/318 (15%)
Query: 5 QSQCYCLWLDRAGFVSVLRLPAR-QRPSLSIYCYALDILFRGV----AVEITNVLSQVPN 59
+++ C W +R+ + + P + R +L + +I F + A +T+ L +
Sbjct: 168 ETEQLCQWFNRSPDLDIRINPLKTSREALENELESANITFNHLKLPLACRLTSGLGNIER 227
Query: 60 V-ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDK 118
+ + LQ++ + L + LD QPG+ ++D CAAPG K THIA LM D G ++A D+
Sbjct: 228 LEGFRAGNYTLQDISAQLVTYLLDPQPGETIIDACAAPGGKTTHIAELMGDRGRILACDQ 287
Query: 119 SKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESF-DRILLDAPCSG 177
+ R+ +LE IK+L L +I+ H+ DS R + Q DR+L+DAPCSG
Sbjct: 288 TASRLRQLEANIKRLDLKAIEIHLGDS------------RDRPQWHGIADRVLIDAPCSG 335
Query: 178 FG---QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVY 234
G +RP + NL A Q +LL + +V K GILVY
Sbjct: 336 LGTLHKRPDIRWRQTPENL----PVLAKRQGELLASAATWV-----------KPKGILVY 380
Query: 235 CTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIP 294
TC+L+ ENE VI L HP+ ++ P + + E A+ ++P
Sbjct: 381 ATCTLNPLENERVIEQFLAAHPDWKMAT--PD---SNSSFSEYYTETGAI------EVLP 429
Query: 295 TDRNTDTIGFFICKLRKK 312
N D GFF+ KL K+
Sbjct: 430 HRHNQD--GFFMAKLVKE 445
>gi|303319389|ref|XP_003069694.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Coccidioides posadasii C735
delta SOWgp]
gi|240109380|gb|EER27549.1| Nucleolar protein NOP2, putative [Coccidioides posadasii C735 delta
SOWgp]
Length = 682
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 96/297 (32%), Positives = 143/297 (48%), Gaps = 50/297 (16%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +S + L P LAGHY L QP +
Sbjct: 323 LINRGVVLEPVGKWSKVGLQVFESPV-PLGATPEYLAGHYILQAASSFLPVMALAPQPHE 381
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM AAPG K T+++ LM +TG ++A D +K R L I +L + D+
Sbjct: 382 RVLDMAAAPGGKTTYMSALMRNTGCVLANDANKERAKGLIGNIHRLGCKNTIVSNLDA-- 439
Query: 148 INTSSQIDIERMKLQKE--SFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYAN 202
R K FDR+LLDAPCSG G + P + + ++ + +
Sbjct: 440 ----------RTAFPKAMGGFDRVLLDAPCSGTGVISKDPSVKTSKT----ERDFFALPH 485
Query: 203 IQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQ 262
+QK+LL A + G G +VY TCS++VEENEAV+ ++L + P V++V
Sbjct: 486 MQKQLLLAAIDSTTHASKTG-------GYIVYSTCSVTVEENEAVVQYVLRKRPNVKIVD 538
Query: 263 T-LPQLGMKGL-AHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKKYGEAP 317
T L G +G ++K + + + M R P N D GF++CKL KK G +P
Sbjct: 539 TGLGNFGSEGFKSYKGKQFDPRMAMTRR---YFPHRENVD--GFYVCKL-KKIGPSP 589
>gi|75910625|ref|YP_324921.1| rRNA SAM-dependent methyltransferase [Anabaena variabilis ATCC
29413]
gi|75704350|gb|ABA24026.1| Fmu, rRNA SAM-dependent methyltransferase [Anabaena variabilis ATCC
29413]
Length = 449
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 117/244 (47%), Gaps = 36/244 (14%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
++Q+ + L H LD QPG+ ++D CAAPG K THIA LM D G + A D++ R+ KL+
Sbjct: 237 VVQDASAQLVSHLLDPQPGEVIIDACAAPGGKTTHIAELMKDQGKVWAGDRTASRLRKLK 296
Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNA 187
E ++L L SI+ DS + + DR+LLDAPCSG G +A
Sbjct: 297 ENAQRLNLHSIEICTGDSRNLPQFYNV-----------ADRVLLDAPCSGLGTLHRHADA 345
Query: 188 NSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
+ + ++ + +Q++LL +FV K G+LVY TC+L ENE V
Sbjct: 346 R-WRQTPESVQELSTLQQELLSHTSKFV-----------KVGGVLVYATCTLHPAENEEV 393
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I + R+ + ++ P D D Q + L N D GFF+
Sbjct: 394 ITEFMARNSDWQIEPPSP----------DSPYSDYTTPQGW---LKVWPHNQDMDGFFMV 440
Query: 308 KLRK 311
+LRK
Sbjct: 441 RLRK 444
>gi|115443216|ref|XP_001218415.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Aspergillus terreus NIH2624]
gi|114188284|gb|EAU29984.1| nucleolar protein NOP2 [Aspergillus terreus NIH2624]
Length = 734
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 97/302 (32%), Positives = 137/302 (45%), Gaps = 71/302 (23%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +S++ L P LAGHY L QP +
Sbjct: 316 LINRGVVLEPVGKWSKVGLQVFESAV-PLGATPEYLAGHYILQAASSFLPVMALAPQPEE 374
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
++LDM AAPG K T+I+ LM +TG +IA D SKPR L I +L + D+
Sbjct: 375 RILDMAAAPGGKTTYISALMRNTGCVIANDASKPRAKGLIGNIHRLGCKNTIVTNLDA-- 432
Query: 148 INTSSQIDIERMKLQKE--SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYAN--- 202
R K FDR+LLDAPC+G G ++ D +K+ N
Sbjct: 433 ----------RTAFPKAMGGFDRVLLDAPCTGTG----------VISKDPGVKTNKNERD 472
Query: 203 ------IQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHP 256
+Q++LL A V G G +VY TCS++VEENEAV+ ++L + P
Sbjct: 473 FLAIPHMQRQLLLAAIDSVDHASKTG-------GYIVYSTCSVTVEENEAVVQYVLKKRP 525
Query: 257 EVELVQT-LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKL 309
V+LV T L G G + + + F P + T R N D GFF+ K
Sbjct: 526 NVKLVDTGLGDFGSPGFTN--------YMGKHFDPKMTLTRRYFPHRENVD--GFFVSKF 575
Query: 310 RK 311
+K
Sbjct: 576 KK 577
>gi|149173494|ref|ZP_01852124.1| sun protein [Planctomyces maris DSM 8797]
gi|148847676|gb|EDL62009.1| sun protein [Planctomyces maris DSM 8797]
Length = 477
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 109/207 (52%), Gaps = 31/207 (14%)
Query: 60 VALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKS 119
V + +Q+ ++ AG+ L+ QP + V DMCAAPG K TH+A LM + GTLIA D S
Sbjct: 279 VGFSAGKFTIQDQSAMAAGNLLNPQPEETVWDMCAAPGTKTTHLAELMYNRGTLIATDVS 338
Query: 120 KPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSG-- 177
R+ K+E+ +L L+ I+TH+ +N +I + FD IL+DAPCS
Sbjct: 339 CDRLEKIEQNASRLGLTCIETHL-----VNQPDEI------WSTKQFDAILVDAPCSNSG 387
Query: 178 -FGQRPMFYNANSFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC 235
G+RP + LD+ +K IQ+ LL+ ++ LK G LVY
Sbjct: 388 VLGKRP-----EARWRLDEVSLKELNQIQRDLLEQAFQH-----------LKSSGRLVYS 431
Query: 236 TCSLSVEENEAVIAWILHRHPEVELVQ 262
TCS ENE ++ +L HPE +LV+
Sbjct: 432 TCSFDPRENEDLLQDVLRDHPERKLVR 458
>gi|50546513|ref|XP_500726.1| YALI0B10560p [Yarrowia lipolytica]
gi|49646592|emb|CAG82971.1| YALI0B10560p [Yarrowia lipolytica CLIB122]
Length = 609
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 93/296 (31%), Positives = 137/296 (46%), Gaps = 55/296 (18%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ ++V DS++ I P L GHY +D Q
Sbjct: 271 AQSLVNRGVNLQPIGKWTKVGLQIFDSAVPIGAT-PEYLCGHYILQAASSFLPVMAMDPQ 329
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
G++VLDM A+PG K T+I+ LM +TG + A D SKPR+ L I +L + YD
Sbjct: 330 EGERVLDMAASPGGKTTYISALMKNTGMVFANDVSKPRIKSLIANIHRLGCKNTVVCNYD 389
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY---A 201
+ FDRILLDAPCSG G + + + ++ K +
Sbjct: 390 AREFPKVIG-----------GFDRILLDAPCSGTG----VISKDQAVKTNRSEKDFIQLP 434
Query: 202 NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
++QK+LL + V G G++VY TCS+ VEENEAV+ + L + P V LV
Sbjct: 435 HLQKQLLLSAIDSVDANSATG-------GVIVYSTCSVMVEENEAVVDYALRKRPNVRLV 487
Query: 262 QTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
+T ++G +G + F P L T R N D GF++ K +K
Sbjct: 488 ETGLEIGKEGFT--------SFRGKTFSPKLKLTRRYYPHTYNVD--GFYVAKFQK 533
>gi|16078637|ref|NP_389456.1| RNA-binding Sun protein [Bacillus subtilis subsp. subtilis str.
168]
gi|221309449|ref|ZP_03591296.1| hypothetical protein Bsubs1_08691 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221313774|ref|ZP_03595579.1| hypothetical protein BsubsN3_08627 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221318698|ref|ZP_03599992.1| hypothetical protein BsubsJ_08561 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221322969|ref|ZP_03604263.1| hypothetical protein BsubsS_08667 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|402775819|ref|YP_006629763.1| RNA-binding Sun protein [Bacillus subtilis QB928]
gi|418033279|ref|ZP_12671756.1| hypothetical protein BSSC8_27000 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|452914583|ref|ZP_21963210.1| ribosomal RNA small subunit methyltransferase B [Bacillus subtilis
MB73/2]
gi|3915867|sp|P94464.2|RSMB_BACSU RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|2337803|emb|CAA74264.1| putative Fmu protein [Bacillus subtilis subsp. subtilis str. 168]
gi|2633946|emb|CAB13447.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus subtilis
subsp. subtilis str. 168]
gi|351469427|gb|EHA29603.1| hypothetical protein BSSC8_27000 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|402481001|gb|AFQ57510.1| RNA-binding Sun protein [Bacillus subtilis QB928]
gi|407958981|dbj|BAM52221.1| RNA-binding Sun protein [Synechocystis sp. PCC 6803]
gi|407964558|dbj|BAM57797.1| RNA-binding Sun protein [Bacillus subtilis BEST7003]
gi|452117003|gb|EME07398.1| ribosomal RNA small subunit methyltransferase B [Bacillus subtilis
MB73/2]
Length = 447
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 123/248 (49%), Gaps = 40/248 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L LD + + VLD CAAPG K HIA LM + G++ +LD K +V ++E
Sbjct: 235 IQDESSMLVARALDPKSDETVLDACAAPGGKSAHIAELMKNKGSVTSLDLHKHKVKLIKE 294
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP-MF 184
+L L+ I D+ + + + E FDRIL+DAPCSGFG ++P M
Sbjct: 295 AADRLGLTIIHAETMDARKAGET---------FENEQFDRILVDAPCSGFGVIRRKPDMK 345
Query: 185 YNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
Y D + A IQ +L+ + PL+KK G LVY TC++ EN
Sbjct: 346 YTKKP----DDSAR-LAEIQLSILREI-----------APLVKKGGTLVYSTCTMDRTEN 389
Query: 245 EAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
+ VI + HP+ E P L ++ K L + + ++ ++P TD GF
Sbjct: 390 DEVIHAFIQEHPDFE-----PDLSLE----KRLPEKVRPFVRDGRLQILPHYFGTD--GF 438
Query: 305 FICKLRKK 312
FIC +RKK
Sbjct: 439 FICSMRKK 446
>gi|320040863|gb|EFW22796.1| nucleolar RNA methyltransferase [Coccidioides posadasii str.
Silveira]
Length = 682
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 96/297 (32%), Positives = 143/297 (48%), Gaps = 50/297 (16%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +S + L P LAGHY L QP +
Sbjct: 323 LINRGVVLEPVGKWSKVGLQVFESPV-PLGATPEYLAGHYILQAASSFLPVMALAPQPHE 381
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM AAPG K T+++ LM +TG ++A D +K R L I +L + D+
Sbjct: 382 RVLDMAAAPGGKTTYMSALMRNTGCVLANDANKERAKGLIGNIHRLGCKNTIVSNLDA-- 439
Query: 148 INTSSQIDIERMKLQKE--SFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYAN 202
R K FDR+LLDAPCSG G + P + + ++ + +
Sbjct: 440 ----------RTAFPKAMGGFDRVLLDAPCSGTGVISKDPSVKTSKT----ERDFFALPH 485
Query: 203 IQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQ 262
+QK+LL A + G G +VY TCS++VEENEAV+ ++L + P V++V
Sbjct: 486 MQKQLLLAAIDSTTHASKTG-------GYIVYSTCSVTVEENEAVVQYVLRKRPNVKIVD 538
Query: 263 T-LPQLGMKGL-AHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKKYGEAP 317
T L G +G ++K + + + M R P N D GF++CKL KK G +P
Sbjct: 539 TGLGNFGSEGFKSYKGKQFDPRMAMTRR---YFPHRENVD--GFYVCKL-KKIGPSP 589
>gi|328767857|gb|EGF77905.1| hypothetical protein BATDEDRAFT_1711 [Batrachochytrium
dendrobatidis JAM81]
Length = 445
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 133/291 (45%), Gaps = 51/291 (17%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V DS + I P LAGHY L Q +
Sbjct: 186 LINRGVNLEPIGKWSKVGIQVFDSPVPIGAT-PEYLAGHYMLQAAASFLPVMSLAPQSNE 244
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
++LDMCAAPG K T+IA LM +TG L A D SK R+ L ++ + + YD +
Sbjct: 245 RILDMCAAPGGKTTYIAALMKNTGCLFANDISKDRLKSLNANCHRMGVRNTVVCCYDGKQ 304
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY---ANIQ 204
FDR+LLDAPCSG G + + + ++K + + IQ
Sbjct: 305 FPNVIG-----------GFDRVLLDAPCSGTG----VISKDQSVKINKGDEDFQILTQIQ 349
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL 264
K+L+ + + G G LVY TC+++VEENE VI + L+R P V+LV +
Sbjct: 350 KELILSAIDSIDAHSSTG-------GYLVYSTCAITVEENEEVINYALNRRPNVKLVDSG 402
Query: 265 PQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR----NTDTIGFFICKLRK 311
G +G ++F P + T R + GFF+ KL+K
Sbjct: 403 LDFGREGFI--------SFRGKQFHPSMALTRRYYPHTQNMDGFFVAKLKK 445
>gi|205373323|ref|ZP_03226127.1| hypothetical protein Bcoam_08355 [Bacillus coahuilensis m4-4]
Length = 192
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 111/227 (48%), Gaps = 40/227 (17%)
Query: 89 VLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRI 148
+LD CAAPG K THIA +N+TG + ALD K +V +++ +LQL+++ TH DS +
Sbjct: 2 ILDACAAPGGKTTHIAERLNNTGVVEALDLHKHKVALIKQNADRLQLTNVTTHTLDSRKA 61
Query: 149 NTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYANIQK 205
N ++E FDRIL+DAPCSG G ++P A + +K + S IQ
Sbjct: 62 NEL---------FKEECFDRILVDAPCSGLGVVRRKPDIKYAKN----EKDLNSLQRIQL 108
Query: 206 KLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLP 265
++L V PLLKK GILVY TC++ EN+ + L H + E
Sbjct: 109 EILNRV-----------APLLKKGGILVYSTCTVDQIENDGTVQQFLKEHHDFEPAHLNT 157
Query: 266 QLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKK 312
++ +D + + + P D D GFFI RKK
Sbjct: 158 PEALQAFKQEDYKLQ-----------IFPQDFGGD--GFFISSFRKK 191
>gi|449701642|gb|EMD42424.1| proliferating-cell nucleolar antigen p120, putative [Entamoeba
histolytica KU27]
Length = 503
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 106/317 (33%), Positives = 151/317 (47%), Gaps = 67/317 (21%)
Query: 19 VSVLRLPARQRPSLSIYCYALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAG 78
+ V L +R+R A ++ RGV V++ S+ V DS + I P LAG
Sbjct: 224 IRVNTLKSRRRE------LAQKLINRGVNVDMIE-WSKSGLVVYDSQVPIGAT-PEYLAG 275
Query: 79 HY-------------LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTK 125
Y L QP +K+LDMCAAPG K THIA LM DTG L+A D SK R+
Sbjct: 276 QYILQSSSSWVSVIALAPQPNEKILDMCAAPGGKTTHIAALMKDTGVLVANDISKDRLKA 335
Query: 126 LEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFY 185
+ + +L ++ +T I + ++ Q FDR+L+DAPC+G G
Sbjct: 336 VIGNVHRLGIT--------NTIITNCDGHEFPKVMGQ---FDRVLVDAPCTGLG----II 380
Query: 186 NANSFLNLDKK---IKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVE 242
+ ++ + L K IK IQK+L+ V+ P K G +VY TCS++VE
Sbjct: 381 SRDAAVKLSKSEQDIKDCTRIQKELILHAIDSVN-------PKSKTGGYVVYSTCSITVE 433
Query: 243 ENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQ---RFGPPL------I 293
ENEAVI + L + V+ +P +A +D ED V RF P +
Sbjct: 434 ENEAVIDYALKKRN----VKVVP------IALQDGVGEDGYVNHRQYRFHPSVKMAKRFF 483
Query: 294 PTDRNTDTIGFFICKLR 310
P +N D GFF+CKL+
Sbjct: 484 PHIQNMD--GFFVCKLK 498
>gi|430759003|ref|YP_007209724.1| ribosomal RNA small subunit methyltransferase B [Bacillus subtilis
subsp. subtilis str. BSP1]
gi|430023523|gb|AGA24129.1| Ribosomal RNA small subunit methyltransferase B [Bacillus subtilis
subsp. subtilis str. BSP1]
Length = 447
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 123/248 (49%), Gaps = 40/248 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L LD + + VLD CAAPG K HIA LM + G++ +LD K +V ++E
Sbjct: 235 IQDESSMLVARALDPKSDETVLDACAAPGGKSAHIAELMKNKGSVTSLDLHKHKVKLIKE 294
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP-MF 184
+L L+ I D+ + + + E FDRIL+DAPCSGFG ++P M
Sbjct: 295 AADRLGLTIIHAETMDARKAGET---------FENEQFDRILVDAPCSGFGVIRRKPDMK 345
Query: 185 YNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
Y D + A IQ +L+ + PL+KK G LVY TC++ EN
Sbjct: 346 YTKKP----DDSAR-LAEIQLSILREI-----------APLVKKGGTLVYSTCTMDRTEN 389
Query: 245 EAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
+ VI + HP+ E P L ++ K L + + ++ ++P TD GF
Sbjct: 390 DEVIHAFIQEHPDFE-----PDLSLE----KRLPEKVRPFVRDGRLQILPHYFGTD--GF 438
Query: 305 FICKLRKK 312
FIC +RKK
Sbjct: 439 FICSMRKK 446
>gi|260944772|ref|XP_002616684.1| hypothetical protein CLUG_03925 [Clavispora lusitaniae ATCC 42720]
gi|238850333|gb|EEQ39797.1| hypothetical protein CLUG_03925 [Clavispora lusitaniae ATCC 42720]
Length = 599
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 93/296 (31%), Positives = 136/296 (45%), Gaps = 55/296 (18%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ ++V DS + I P LAGHY LD Q
Sbjct: 274 AQTLVNRGVNLQPIGAWTKVGLQIFDSQVPIGAT-PEYLAGHYILQAASSFLPVMALDPQ 332
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
++VLDM AAPG K T+I+ LM +TG + A D +K R L I++L + YD
Sbjct: 333 ENERVLDMAAAPGGKTTYISALMKNTGCVFANDANKARTKSLIANIQRLGCKNTIVCHYD 392
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANI- 203
+ FDR+LLDAPCSG G + + + + K + I
Sbjct: 393 AREFPKVIG-----------GFDRVLLDAPCSGTG----VIAKDESVKVSRTEKDFIQIP 437
Query: 204 --QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
QK+LL + V G G++VY TCS++V+ENEAV+ + L + P V+LV
Sbjct: 438 HLQKQLLLSAIDSVDANSPTG-------GVIVYSTCSIAVDENEAVVDYALRKRPNVKLV 490
Query: 262 QTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
+T Q+G +G +RF P + T R N D GF++ K +K
Sbjct: 491 ETGLQIGKEGFT--------SYRGKRFNPKISMTRRYYPHTYNVD--GFYVAKFKK 536
>gi|311029974|ref|ZP_07708064.1| sun protein [Bacillus sp. m3-13]
Length = 275
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 82/255 (32%), Positives = 129/255 (50%), Gaps = 38/255 (14%)
Query: 61 ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSK 120
A + +Q+ S+L L V+ V D CAAPG K THIA L+ D+G +I+ D +
Sbjct: 55 AFKNGYMTIQDESSMLVARALGVEKDDFVYDCCAAPGGKTTHIAELLKDSGRVISTDLHE 114
Query: 121 PRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG- 179
+V +++ ++LQLS+I+ DS + + +I ++E FD+IL+DAPCSGFG
Sbjct: 115 HKVKLIKDQAERLQLSNIEAQALDSRK---AQEI------FKEEQFDKILVDAPCSGFGV 165
Query: 180 --QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC 237
++P S + IK A+IQ +L+ V PL+KK G LVY TC
Sbjct: 166 IRRKPDLKYTKSM----QDIKQLASIQLAILKEV-----------APLVKKGGTLVYSTC 210
Query: 238 SLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR 297
++ EEN V+ L + E E+ +K L + + + + M + P TD
Sbjct: 211 TIDKEENADVVQAFLEANKEFEI-----DFNIKELLPEKVNSYVKEGMLQLLPHYFGTD- 264
Query: 298 NTDTIGFFICKLRKK 312
GFFI +L+++
Sbjct: 265 -----GFFIVRLKRQ 274
>gi|392595710|gb|EIW85033.1| NOL1/NOP2/sun family RNA met [Coniophora puteana RWD-64-598 SS2]
Length = 410
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 88/296 (29%), Positives = 138/296 (46%), Gaps = 47/296 (15%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E + V +SS+ I P LAGHY L QP +
Sbjct: 86 LINRGVNLEPIGKWTNVGLQVFESSVPIGAT-PEYLAGHYMLQAASSFLPVVALAPQPEE 144
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM +APG K THIA L+ +TG + A D +K R L + +L ++ YD
Sbjct: 145 RVLDMASAPGGKTTHIAALLQNTGVVFANDANKARTKSLTANVHRLGCKNVTVCSYDGRE 204
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY---ANIQ 204
FDR+LLDAPCSG G + +S + ++K + + +++Q
Sbjct: 205 FPKVIG-----------GFDRVLLDAPCSGTG----VISKDSSVKVNKSERDFQLLSHLQ 249
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL 264
K+L+ VS P K ++VY TCS++V+ENEAV+ + L + P V+LV T
Sbjct: 250 KQLILCAIDSVS-------PDSKTGAVVVYSTCSVTVDENEAVVDYALRKRPNVKLVDTG 302
Query: 265 PQLGMKGLA--HKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKKYGEAPE 318
G +G + ++ +RF P + D GF++ K + + P+
Sbjct: 303 IGFGREGFTKFRGKVFHPSVSLTRRFYPHVHNMD------GFYVAKFKVEKRRKPD 352
>gi|255955391|ref|XP_002568448.1| Pc21g14330 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590159|emb|CAP96330.1| Pc21g14330 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 733
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 95/298 (31%), Positives = 138/298 (46%), Gaps = 63/298 (21%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +S + L P LAGHY L QP +
Sbjct: 304 LINRGVVLEPVGKWSKVGLQVFESPV-PLGATPEYLAGHYILQAASSFLPVMALAPQPNE 362
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM +APG K T+++ LM +TG ++A D SKPR L I +L + D+
Sbjct: 363 RVLDMASAPGGKTTYMSALMRNTGCVVANDASKPRAKGLIGNIHRLGCKNTIVTNMDA-- 420
Query: 148 INTSSQIDIERMKLQKE--SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYAN--- 202
R K FDR+LLDAPC+G G ++ D +K+ N
Sbjct: 421 ----------RTAFPKAMGGFDRVLLDAPCTGTG----------VISKDPGVKTSKNERD 460
Query: 203 ------IQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHP 256
+Q++LL A V G G +VY TCS++VEENEAV+ ++L + P
Sbjct: 461 FLAIPHMQRQLLLAAIDSVDHASKTG-------GYIVYSTCSVTVEENEAVVQYVLRKRP 513
Query: 257 EVELVQT-LPQLGMKGLAHKDLEAED--QAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
V++V T L G G + D A+ +R+ P N D GF++CKL+K
Sbjct: 514 NVKIVDTGLGGFGSPGFLSYMGKTFDPKMALTRRY----FPHRENVD--GFYVCKLKK 565
>gi|449094266|ref|YP_007426757.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus subtilis
XF-1]
gi|449028181|gb|AGE63420.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus subtilis
XF-1]
Length = 447
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 123/248 (49%), Gaps = 40/248 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L LD + + VLD CAAPG K HIA LM + G++ +LD K +V ++E
Sbjct: 235 IQDESSMLVARALDPKSDETVLDACAAPGGKSAHIAELMKNKGSVTSLDLHKHKVKLIKE 294
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP-MF 184
+L L+ I D+ + + + E FDRIL+DAPCSGFG ++P M
Sbjct: 295 AADRLGLTIIHAETMDARKAGET---------FENEQFDRILVDAPCSGFGVIRRKPDMK 345
Query: 185 YNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
Y D + A IQ +L+ + PL+KK G LVY TC++ EN
Sbjct: 346 YTKKP----DDSAR-LAEIQLSILREI-----------APLVKKGGTLVYSTCTMDRTEN 389
Query: 245 EAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
+ VI + HP+ E P L ++ K L + + ++ ++P TD GF
Sbjct: 390 DEVIHAFIQEHPDFE-----PDLSLE----KRLPEKVRPFVRDGRLQILPHYFGTD--GF 438
Query: 305 FICKLRKK 312
FIC +RKK
Sbjct: 439 FICSMRKK 446
>gi|169827064|ref|YP_001697222.1| ribosomal RNA small subunit methyltransferase B [Lysinibacillus
sphaericus C3-41]
gi|168991552|gb|ACA39092.1| Ribosomal RNA small subunit methyltransferase B [Lysinibacillus
sphaericus C3-41]
Length = 453
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 80/251 (31%), Positives = 126/251 (50%), Gaps = 41/251 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S++ + L PG +VLDMCAAPG K TH+A +M + G+++A D ++ ++
Sbjct: 240 IQDESSMIPANVLKPSPGMRVLDMCAAPGGKTTHLAEIMKNEGSILATDLHPHKLDLIDH 299
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
++L L I+T D + LQ ES+D IL+DAPCSG G ++P
Sbjct: 300 NTERLGLDIIETAPIDGRKAPEF---------LQAESYDAILVDAPCSGLGVMRRKPDI- 349
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ ++ +++ IQ LL A + +LK G LVY TC++ +ENE
Sbjct: 350 ---KYTKREEDLENLQTIQLALLDAATK-----------VLKIKGKLVYSTCTVDKQENE 395
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
+ L HPE+E +Q ++ L K E + ++Q F P D +D GFF
Sbjct: 396 GTVNAFLAAHPEMEAIQ------LESLPTKLAEKQANGMLQVF-----PQDFGSD--GFF 442
Query: 306 ICKLRKKYGEA 316
+ RKK GE+
Sbjct: 443 VAAFRKK-GES 452
>gi|56964082|ref|YP_175813.1| RNA-binding protein Sun [Bacillus clausii KSM-K16]
gi|56910325|dbj|BAD64852.1| RNA-binding protein Sun [Bacillus clausii KSM-K16]
Length = 447
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 83/249 (33%), Positives = 119/249 (47%), Gaps = 45/249 (18%)
Query: 70 QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEET 129
Q+ S+L L + G VLD CAAPG K THIA MN TG ++ALD +V + E
Sbjct: 237 QDEASMLVAKLLGPEEGMDVLDACAAPGGKTTHIAEQMNGTGHILALDLHPHKVKLIAEQ 296
Query: 130 IKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYN 186
+L L +I+T D+ + T K+ ++R+L+DAPC+GFG ++P
Sbjct: 297 AARLGLENIETRAEDARTLQT------------KKHYNRVLVDAPCTGFGVIRRKPDI-- 342
Query: 187 ANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEA 246
+ +K +K AN+Q +L +FV K+ G LVY TC++ EENE
Sbjct: 343 --RWSKTEKDVKHIANVQAAILAHASQFV-----------KQGGTLVYSTCTIEKEENEH 389
Query: 247 VIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGP---PLIPTDRNTDTIG 303
I L HP+ E + + L QA RF P ++P D TD G
Sbjct: 390 AIERFLDTHPQFETNERF---------YGRLPDHIQA-NGRFSPLGLTILPHDFGTD--G 437
Query: 304 FFICKLRKK 312
FF+ L +K
Sbjct: 438 FFMVPLTRK 446
>gi|119512103|ref|ZP_01631196.1| Fmu, rRNA SAM-dependent methyltransferase [Nodularia spumigena
CCY9414]
gi|119463261|gb|EAW44205.1| Fmu, rRNA SAM-dependent methyltransferase [Nodularia spumigena
CCY9414]
Length = 449
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 99/323 (30%), Positives = 146/323 (45%), Gaps = 58/323 (17%)
Query: 11 LWLDRAGFVSVLRL--PARQRPSLSIYCYALDILFRGV--AVEITNVLSQVPN-----VA 61
+WLD+ V L Q P++ + L V A+E +L++ N +
Sbjct: 158 VWLDQLDLVETENLCDWMNQTPTIDLRINPLRTSIEEVEAALESAGILTRRVNNCPQALR 217
Query: 62 LDSSMGILQNLPSI-------------LAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMN 108
L S G +QNLP L G+ L Q G+ V+D CAAPG K THIA LM
Sbjct: 218 LIGSTGAIQNLPGFNEGWWSVQDASAQLVGYLLHPQAGEVVIDACAAPGGKTTHIAELMG 277
Query: 109 DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDR 168
D G + A D++ R+ KL+E ++L L SIQ DS + + DR
Sbjct: 278 DEGEIWACDRTASRLRKLKENAQRLHLQSIQICTGDSRNLPQFNH-----------RGDR 326
Query: 169 ILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKK 228
+LLDAPCSG G +A L+ ++ + +Q +L+ +FV K
Sbjct: 327 LLLDAPCSGLGTLHRHADARWRQTLE-SVQELSILQTELISQTSQFV-----------KP 374
Query: 229 DGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRF 288
G+LVY TC+L ENE VI+ L HP+ ++ P A+ + Q ++ +
Sbjct: 375 GGVLVYATCTLHPAENEGVISTFLANHPQWQIYP--PSADFLDSAY----STPQGWLKVW 428
Query: 289 GPPLIPTDRNTDTIGFFICKLRK 311
P +N D GFF+ +LRK
Sbjct: 429 -----PHRQNMD--GFFMVRLRK 444
>gi|365157094|ref|ZP_09353375.1| ribosomal RNA small subunit methyltransferase B [Bacillus smithii
7_3_47FAA]
gi|363625828|gb|EHL76839.1| ribosomal RNA small subunit methyltransferase B [Bacillus smithii
7_3_47FAA]
Length = 446
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 85/257 (33%), Positives = 121/257 (47%), Gaps = 44/257 (17%)
Query: 61 ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSK 120
A + +Q+ S+L H + ++PG VLD CAAPG K TH+A M TG + ALD
Sbjct: 227 AFQKGLMTIQDESSMLVAHAMKLEPGMVVLDACAAPGGKTTHMAEKMQGTGKVYALDLHP 286
Query: 121 PRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG- 179
++ +E+ +L L +I + DS + K +SFDRIL+DAPCSG G
Sbjct: 287 HKIKLIEDNAVRLGLENISSLPLDSRKGGE---------KFPPQSFDRILVDAPCSGLGV 337
Query: 180 --QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC 237
++P ++ + ++S IQ ++L A PLLK G+LVY TC
Sbjct: 338 LRRKPDI----KYVKKQEDLQSLQKIQLEILDA-----------QAPLLKSGGLLVYSTC 382
Query: 238 SLSVEENEAVIAWILHRHPEV--ELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPT 295
++ EENE L RHPE E + LP+ +A L+ + P
Sbjct: 383 TVDQEENEGTANRFLDRHPEFEPEPLDHLPEAVQPFVAGHFLQ-------------IFPQ 429
Query: 296 DRNTDTIGFFICKLRKK 312
D D GFFI RKK
Sbjct: 430 DFGGD--GFFISCFRKK 444
>gi|397906023|ref|ZP_10506850.1| Ribosomal RNA small subunit methyltransferase B [Caloramator
australicus RC3]
gi|397160937|emb|CCJ34185.1| Ribosomal RNA small subunit methyltransferase B [Caloramator
australicus RC3]
Length = 446
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 129/249 (51%), Gaps = 45/249 (18%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S++A L+ +PG+KVLDMCAAPG K TH+A LM +TG +IA D + ++ + E
Sbjct: 235 VQDQSSMMASIILNPKPGEKVLDMCAAPGGKATHMAELMENTGEIIAFDVHEHKIDLINE 294
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
K+L + I+ + D+T K + +FD+ILLDAPCSG G ++P
Sbjct: 295 NSKRLGIGIIKPMLKDATGF----------YKEFENNFDKILLDAPCSGLGLIRKKPEIR 344
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
S K IK IQ LL+ ++V + +G ++Y TC+++ +ENE
Sbjct: 345 WNVSL----KNIKDLTKIQSILLKNASKYVKI-----------NGEILYSTCTITKDENE 389
Query: 246 AVIAWILHRHPEVELV---QTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTI 302
+I L+ + ELV + +P +E ++ + + L P NTD
Sbjct: 390 QIIEKFLNENTNFELVNISELVP-----------IEFKNSLIDGTY-LRLYPNINNTD-- 435
Query: 303 GFFICKLRK 311
GFFICKL++
Sbjct: 436 GFFICKLKR 444
>gi|119182737|ref|XP_001242484.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Coccidioides immitis RS]
gi|392865382|gb|EAS31163.2| nucleolar RNA methyltransferase [Coccidioides immitis RS]
Length = 682
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 96/297 (32%), Positives = 143/297 (48%), Gaps = 50/297 (16%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +S + L P LAGHY L QP +
Sbjct: 323 LINRGVVLEPVGKWSKVGLQVFESPV-PLGATPEYLAGHYILQAASSFLPVMALAPQPHE 381
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM AAPG K T+++ LM +TG ++A D +K R L I +L + D+
Sbjct: 382 RVLDMAAAPGGKTTYMSALMRNTGCVLANDANKERAKGLIGNIHRLGCKNTIVSNLDA-- 439
Query: 148 INTSSQIDIERMKLQKE--SFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYAN 202
R K FDR+LLDAPCSG G + P + + ++ + +
Sbjct: 440 ----------RTAFPKAMGGFDRVLLDAPCSGTGVISKDPSVKTSKT----ERDFLALPH 485
Query: 203 IQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQ 262
+QK+LL A + G G +VY TCS++VEENEAV+ ++L + P V++V
Sbjct: 486 MQKQLLLAAIDSTNHASKTG-------GYIVYSTCSVTVEENEAVVQYVLRKRPNVKIVD 538
Query: 263 T-LPQLGMKGL-AHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKKYGEAP 317
T L G +G ++K + + + M R P N D GF++CKL KK G +P
Sbjct: 539 TGLGNFGSEGFKSYKGKQFDPRMAMTRR---YFPHRENVD--GFYVCKL-KKIGPSP 589
>gi|347756200|ref|YP_004863763.1| ribosomal RNA small subunit methyltransferase RsmB [Candidatus
Chloracidobacterium thermophilum B]
gi|347588717|gb|AEP13246.1| ribosomal RNA small subunit methyltransferase RsmB [Candidatus
Chloracidobacterium thermophilum B]
Length = 519
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 86/256 (33%), Positives = 114/256 (44%), Gaps = 34/256 (13%)
Query: 62 LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKP 121
L S +Q+ S +L VQPGQ+VLDMCAAPG K +A LM + GT+ ALD
Sbjct: 288 LTSGKIYVQDAGSQQVARWLGVQPGQRVLDMCAAPGGKTAQLAALMQNEGTITALDVHPH 347
Query: 122 RVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMK------LQKESFDRILLDAPC 175
RV +E+ + +L + + +V D+T + S D R + L +SFD +LLDAPC
Sbjct: 348 RVAAMEQNLARLGVRIARCYVADATSTHLISPADHRRSRKKLPFSLFPDSFDAVLLDAPC 407
Query: 176 SGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC 235
SG G L +K+ A IQ +LL W +K G L+Y
Sbjct: 408 SGTGTLRRHPEIKWRLT-PRKLSELAGIQTRLL-----------WNAAQAVKPGGFLLYA 455
Query: 236 TCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPT 295
CSL E E VI L H E+V P G + L L P
Sbjct: 456 VCSLEAREGEEVIRIFLKHHRNFEVVPP-PDAGDALTSEGFLR-------------LWPD 501
Query: 296 DRNTDTIGFFICKLRK 311
TD GFF +LR+
Sbjct: 502 QDGTD--GFFAARLRR 515
>gi|220906120|ref|YP_002481431.1| sun protein [Cyanothece sp. PCC 7425]
gi|219862731|gb|ACL43070.1| sun protein [Cyanothece sp. PCC 7425]
Length = 443
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 106/213 (49%), Gaps = 26/213 (12%)
Query: 48 VEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLM 107
E + + Q+P A +Q+ + L H L+ QPG+ ++D CAAPG K THIA L+
Sbjct: 218 TEPSGAIEQLPGFA--QGWWSVQDASAQLVSHLLNPQPGEVIIDACAAPGGKSTHIAELI 275
Query: 108 NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFD 167
D G + A D++ R+ KLE+ ++L+L+SI+ DS RM D
Sbjct: 276 GDKGIVWACDRTPSRLKKLEQNRQRLKLNSIRICQGDS------------RMSEFTAQAD 323
Query: 168 RILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLK 227
R+LLDAPCSG G +A + + + A +Q +LL +V K
Sbjct: 324 RVLLDAPCSGLGTLHRHADAR-WRQTPESVAQLAQLQTELLHHTATWV-----------K 371
Query: 228 KDGILVYCTCSLSVEENEAVIAWILHRHPEVEL 260
G LVY TC+L ENEAVI L HP+ ++
Sbjct: 372 PGGTLVYATCTLHPTENEAVIQQFLAHHPQWQI 404
>gi|384500230|gb|EIE90721.1| hypothetical protein RO3G_15432 [Rhizopus delemar RA 99-880]
Length = 608
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 135/294 (45%), Gaps = 57/294 (19%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +S + I P LAGHY L QP +
Sbjct: 306 LINRGVNLEPIGKWSKVGLQVFESQVPIGAT-PEYLAGHYMLQAASSFLPVMALAPQPDE 364
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM +APG K THIA L +TG + A D +K R+ L I +L + + YD
Sbjct: 365 RVLDMASAPGGKTTHIAALQKNTGMVFANDATKDRLKSLVANIHRLGVKNAVVCNYDGRE 424
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANI---Q 204
FDR+LLDAPCSG G + + + L+K K + +I Q
Sbjct: 425 FPKVLG-----------GFDRVLLDAPCSGTG----VISKDPSVKLNKTEKDFIDIPFLQ 469
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL 264
K+L+ + V G G +VY TCS++VEENEAV+ + L + P V+LV T
Sbjct: 470 KQLILSAIDSVDAKSKTG-------GYIVYSTCSVTVEENEAVVNYALSKRPNVKLVPTT 522
Query: 265 PQLGMKGLA-------HKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
G +G A H L+ + +RF P + D GF++ K +K
Sbjct: 523 LDFGREGFASYRGKTFHPSLK-----LTRRFYPHVHNMD------GFYVAKFKK 565
>gi|403337775|gb|EJY68110.1| Ribosomal RNA methyltransferase nop2-like protein [Oxytricha
trifallax]
Length = 715
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 98/297 (32%), Positives = 141/297 (47%), Gaps = 58/297 (19%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+V DS++ I P LAGHY L Q
Sbjct: 211 AKTLIQRGVNLDPVAEWSKVGLKIYDSAVPIGAT-PEYLAGHYILQSASSFLPVIALAPQ 269
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
P +K+LDM AAPG K T+IA LM +TG L+A D K R+ L + +L +++ +D
Sbjct: 270 PNEKILDMAAAPGGKTTYIAQLMKNTGVLVANDLKKERLKSLNANLHRLGVTNTVVINHD 329
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYA 201
+I + FDR LLDAPCSG G + P + +K +
Sbjct: 330 GRKIPSLYT-----------KFDRCLLDAPCSGLGVIARDPSI----KVQKTREDVKKLS 374
Query: 202 NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
++QK+L++A V G G +VY TCS+SVEENE V+ + L + V+LV
Sbjct: 375 HLQKELIKAAIDIVDAHSKTG-------GYIVYSTCSISVEENEWVVDYAL-KSRYVKLV 426
Query: 262 QTLPQLGMKGLA-HKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
+T ++G G HK+ +RF P L T R N D GFF+ K +K
Sbjct: 427 ETGVEIGEPGFTKHKE---------KRFHPSLNLTRRIYPHTHNMD--GFFVAKFKK 472
>gi|406898154|gb|EKD41861.1| RNA methylase, NOL1/NOP2/sun family, partial [uncultured bacterium]
Length = 348
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 125/251 (49%), Gaps = 38/251 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
LQ+L S + LD +PG +VLDMCA+PG K T +A LM + G ++A + + R +LE
Sbjct: 129 LQSLSSQIPPFVLDPKPGDRVLDMCASPGGKTTQMAALMQNQGEMLACEPEQRRFERLES 188
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG----QRPMF 184
+KK S ++ D+ ++N Q FD+ILLDAPCS G P
Sbjct: 189 NVKKQGASIVRCIRLDALKLNLE----------QNGLFDKILLDAPCSSEGTFLLNEPPT 238
Query: 185 YNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
+ S ++K+ A +QK+ LQ + I LLK+ G LVY TC+LS EEN
Sbjct: 239 WQHWSLGFIEKQ----AALQKRFLQ-----------KAIELLKEGGTLVYSTCALSPEEN 283
Query: 245 EAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR---NTDT 301
E V+ +I+ PE+ L++ + L + QA F P + R + +
Sbjct: 284 EGVLDFIVTNFPEMNLIEIASKFNF--LKPPLTQWGGQA----FSPQVSQARRIYPSVNF 337
Query: 302 IGFFICKLRKK 312
GFF+ KL KK
Sbjct: 338 EGFFVGKLIKK 348
>gi|342886300|gb|EGU86169.1| hypothetical protein FOXB_03305 [Fusarium oxysporum Fo5176]
Length = 679
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 131/293 (44%), Gaps = 55/293 (18%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +SS+ L P LAGHY LD Q +
Sbjct: 330 LINRGVTLEPVGKWSKVGLQVFESSV-PLGATPEYLAGHYILQAASSFLPCMALDPQENE 388
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM AAPG K T++A +M +TG ++A D +K R L I +L ++ YD+
Sbjct: 389 RVLDMAAAPGGKTTYMAAMMKNTGIVVANDPNKARAKGLIGNIHRLGTRNVIVSNYDARE 448
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYANIQ 204
FDR+LLDAPCSG G + P + ++ +IQ
Sbjct: 449 FPKPMG-----------GFDRVLLDAPCSGTGVIAKDPSVKTNKT----ERDFMQLPHIQ 493
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL 264
K+L+ A V+ G G +VY TCS++VEENE V+ + L R P V LV
Sbjct: 494 KQLVLAAIDSVNHASKTG-------GYIVYSTCSVTVEENEQVVQYALSRRPNVRLVDAG 546
Query: 265 PQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
G +G + ++F P + T R N D GFF+ K K
Sbjct: 547 LAFGKEGFT--------SYMGKKFDPSMRHTRRYYPHTYNVD--GFFVAKFHK 589
>gi|119719409|ref|YP_919904.1| Fmu (Sun) domain-containing protein [Thermofilum pendens Hrk 5]
gi|119524529|gb|ABL77901.1| Fmu (Sun) domain protein [Thermofilum pendens Hrk 5]
Length = 389
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 111/206 (53%), Gaps = 28/206 (13%)
Query: 44 RGVAVEITNVLSQVPNVA----LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNK 99
+G+AV + + + ++ D + Q+LPS++A LD QPG VLDMCAAPG K
Sbjct: 156 KGLAVRVVRSVYRAVSLRETRYFDEGLIYHQSLPSMVAVRLLDPQPGWTVLDMCAAPGGK 215
Query: 100 LTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERM 159
TH A LM D G +IA+D++K +V + E ++L L S++ VYDS I+
Sbjct: 216 TTHAAQLMGDHGEVIAVDRTKSKVDTIMEHARRLGLKSVKGLVYDSRYISEY-------- 267
Query: 160 KLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFD 219
L K+S D +++D PC+ G RP + F ++ K ++ Q++ L+
Sbjct: 268 -LDKDSVDAVIIDPPCTALGVRPKLWYERGFDDVLK----LSDYQRQFLR---------- 312
Query: 220 WQGIPLLKKDGILVYCTCSLSVEENE 245
+ +L++ G L++ TC++S ENE
Sbjct: 313 -EAAKVLRRGGRLLFTTCTISPYENE 337
>gi|425468533|ref|ZP_18847544.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9701]
gi|389884794|emb|CCI34927.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9701]
Length = 450
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 96/317 (30%), Positives = 149/317 (47%), Gaps = 48/317 (15%)
Query: 5 QSQCYCLWLDRAGFVSVLRLPAR-QRPSLSIYCYALDILFRGV----AVEITNVLSQVPN 59
+++ C W +R+ + + P + R +L + +I F + A +T+ L +
Sbjct: 168 ETEQLCQWFNRSPDLDIRINPLKTSREALENELESANITFNHLKLPLACRLTSGLGNIER 227
Query: 60 V-ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDK 118
+ + LQ++ + L + LD QPG+ ++D CAAPG K THIA LM D G ++A D+
Sbjct: 228 LEGFRAGNYTLQDISAQLVTYLLDPQPGETIIDACAAPGGKTTHIAELMGDRGKILACDQ 287
Query: 119 SKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGF 178
+ R+ +LE IK+L L +I+ H+ DS I DR+L+DAPCSG
Sbjct: 288 TASRLRQLEANIKRLDLKAIEIHLGDSRDRPQWCGI-----------ADRVLIDAPCSGL 336
Query: 179 G---QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC 235
G +RP + NL A Q +LL + +V K GILVY
Sbjct: 337 GTLHKRPDIRWRQTPENL----PVLAKRQGELLASAATWV-----------KPKGILVYA 381
Query: 236 TCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPT 295
TC+L+ ENE VI L HP+ ++ P + + E A+ ++P
Sbjct: 382 TCTLNPLENERVIEQFLAAHPDWKMAT--PD---SNSSFSEYYTETGAI------EVLPH 430
Query: 296 DRNTDTIGFFICKLRKK 312
N D GFF+ KL K+
Sbjct: 431 RHNQD--GFFMAKLVKE 445
>gi|120537962|gb|AAI29564.1| LOC100036868 protein [Xenopus laevis]
Length = 744
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 101/296 (34%), Positives = 142/296 (47%), Gaps = 56/296 (18%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ R V ++ S+ V DSS+ I P LAGHY L Q
Sbjct: 351 AQALINRSVNLDPLGKWSKTGLVIYDSSVPIGAT-PEYLAGHYMLQGASSLLPVIALAPQ 409
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
++VLDMC APG K ++IA LM +TG+++A D + R+ + + +L +++ YD
Sbjct: 410 ENERVLDMCCAPGGKTSYIAQLMKNTGSVVANDMNAERLRSVVGNLHRLGVTNCIISNYD 469
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYA 201
+I S+I FDR+LLDAPCSG G + P S + I+ A
Sbjct: 470 GRQI---SKI--------LGGFDRVLLDAPCSGTGIISKDPAVKTNKSV----QDIQRCA 514
Query: 202 NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
+IQK+L V + D Q + G LVYCTCS++VEENE V+ + L + V+LV
Sbjct: 515 HIQKEL---VLSAIDALDAQS----QTGGFLVYCTCSITVEENECVVDYALKKR-NVKLV 566
Query: 262 QTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
T G +G + +RF P L T R N D GFFI KLRK
Sbjct: 567 PTGLDFGKEGFV--------RFKERRFHPSLRQTRRFYPHTHNMD--GFFIAKLRK 612
>gi|166367976|ref|YP_001660249.1| rRNA SAM-dependent methyltransferase [Microcystis aeruginosa
NIES-843]
gi|166090349|dbj|BAG05057.1| rRNA SAM-dependent methyltransferase [Microcystis aeruginosa
NIES-843]
Length = 450
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 85/267 (31%), Positives = 131/267 (49%), Gaps = 37/267 (13%)
Query: 5 QSQCYCLWLDRAGFVSVLRLPAR-QRPSLSIYCYALDILFRGV----AVEITNVLSQVPN 59
+++ C W +R+ + + P + R +L + +I F + A +T+ L +
Sbjct: 168 ETEQLCQWFNRSPDLDIRINPLKTSREALENELESANITFHHLKLPLACRLTSGLGNIER 227
Query: 60 V-ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDK 118
+ + LQ++ + L + LD QPG+ ++D CAAPG K THIA LM D G ++A D+
Sbjct: 228 LEGFRAGNYTLQDISAQLVTYLLDPQPGETIIDACAAPGGKTTHIAELMGDRGRILACDQ 287
Query: 119 SKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESF-DRILLDAPCSG 177
+ R+ +LE IK+L L +I+ H+ DS R + Q DR+L+DAPCSG
Sbjct: 288 TASRLRQLEANIKRLDLKAIEIHLGDS------------RDRPQWHGIADRVLIDAPCSG 335
Query: 178 FG---QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVY 234
G +RP + NL A Q +LL + +V K GILVY
Sbjct: 336 LGTLHKRPDIRWRQTPENL----PVLAKRQGELLASAATWV-----------KPKGILVY 380
Query: 235 CTCSLSVEENEAVIAWILHRHPEVELV 261
TC+L ENE VI L HP+ ++
Sbjct: 381 ATCTLDPLENERVIEQFLAAHPDWKMA 407
>gi|115528363|gb|AAI24994.1| LOC100036868 protein [Xenopus laevis]
Length = 729
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 141/293 (48%), Gaps = 56/293 (19%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ R V ++ S+ V DSS+ I P LAGHY L Q +
Sbjct: 340 LINRSVNLDPLGKWSKTGLVIYDSSVPIGAT-PEYLAGHYMLQGASSLLPVIALAPQENE 398
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDMC APG K ++IA LM +TG+++A D + R+ + + +L +++ YD +
Sbjct: 399 RVLDMCCAPGGKTSYIAQLMKNTGSVVANDMNAERLRSVVGNLHRLGVTNCIISNYDGRQ 458
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYANIQ 204
I S+I FDR+LLDAPCSG G + P S + I+ A+IQ
Sbjct: 459 I---SKI--------LGGFDRVLLDAPCSGTGIISKDPAVKTNKSV----QDIQRCAHIQ 503
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL 264
K+L V + D Q + G LVYCTCS++VEENE V+ + L + V+LV T
Sbjct: 504 KEL---VLSAIDALDAQS----QTGGFLVYCTCSITVEENECVVDYALKKR-NVKLVPTG 555
Query: 265 PQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
G +G + +RF P L T R N D GFFI KLRK
Sbjct: 556 LDFGKEGFV--------RFKERRFHPSLRQTRRFYPHTHNMD--GFFIAKLRK 598
>gi|395538663|ref|XP_003775388.1| PREDICTED: LOW QUALITY PROTEIN: putative ribosomal RNA
methyltransferase NOP2 [Sarcophilus harrisii]
Length = 706
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 98/296 (33%), Positives = 135/296 (45%), Gaps = 56/296 (18%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+ V DSS+ I P LAGHY L Q
Sbjct: 334 AQALINRGVNLDPLGKWSKTGLVVYDSSVPIGAT-PEYLAGHYILQGASSMLPVIALAPQ 392
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDMC APG K ++IA LM +TG ++A D + R+ + + +L +++
Sbjct: 393 EHERILDMCCAPGGKTSYIAQLMKNTGVILANDANADRLKSVVGNLHRLGVTNT------ 446
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYA 201
S D FDR+LLDAPCSG G + P DK IK A
Sbjct: 447 -----IISHDDGRHFPKVVGGFDRVLLDAPCSGTGIISKDPSVKTNKD----DKDIKRCA 497
Query: 202 NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
+IQK+LL + V+ G G +VYCTCS++VEENE V+ + L + V LV
Sbjct: 498 HIQKELLLSAIDSVNAASKTG-------GYIVYCTCSITVEENECVVEYALKKR-NVRLV 549
Query: 262 QTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
T G +G H +RF P L T R N D GFFI K +K
Sbjct: 550 PTGLDFGQEGFTH--------FRERRFHPTLRSTRRFYPHTHNMD--GFFIAKFKK 595
>gi|296817387|ref|XP_002849030.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Arthroderma otae CBS 113480]
gi|238839483|gb|EEQ29145.1| nucleolar protein NOP2 [Arthroderma otae CBS 113480]
Length = 683
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 97/303 (32%), Positives = 141/303 (46%), Gaps = 62/303 (20%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +S + L P LAGHY L QP +
Sbjct: 332 LINRGVVLEPVGKWSKVGLQVFESPV-PLGATPEYLAGHYILQAASSFLPVMALAPQPHE 390
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
++LDM AAPG K T+ + LM +TG+++A D SK R L I +L + D+
Sbjct: 391 RILDMAAAPGGKTTYASALMRNTGSILANDASKTRAKGLIGNIHRLGCKNTIVSNLDA-- 448
Query: 148 INTSSQIDIERMKLQKE--SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYA---- 201
R K FDR+LLDAPCSG G ++ D K+K+
Sbjct: 449 ----------RTAFPKAVGGFDRVLLDAPCSGTG----------VISKDPKVKTSKTERD 488
Query: 202 -----NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHP 256
++QK+LL A + G G +VY TCS++VEENE V+ + L + P
Sbjct: 489 FLALPHMQKQLLLAAIDSTNHASKTG-------GYIVYSTCSVTVEENEGVVQYALRKRP 541
Query: 257 EVELVQT-LPQLGMKGL-AHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKKYG 314
V++V T L G G ++ + + +D+ + R P N D GFF+CKL KK G
Sbjct: 542 NVKIVDTGLGSFGTPGFKSYMNKKFDDKMPLTRR---YYPHRENVD--GFFVCKL-KKTG 595
Query: 315 EAP 317
+P
Sbjct: 596 PSP 598
>gi|256958399|ref|ZP_05562570.1| fmu family protein [Enterococcus faecalis DS5]
gi|257078290|ref|ZP_05572651.1| fmu [Enterococcus faecalis JH1]
gi|294779981|ref|ZP_06745361.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis PC1.1]
gi|307270563|ref|ZP_07551861.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX4248]
gi|397701267|ref|YP_006539055.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis D32]
gi|422711158|ref|ZP_16768091.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0027]
gi|256948895|gb|EEU65527.1| fmu family protein [Enterococcus faecalis DS5]
gi|256986320|gb|EEU73622.1| fmu [Enterococcus faecalis JH1]
gi|294452962|gb|EFG21384.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis PC1.1]
gi|306513144|gb|EFM81778.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX4248]
gi|315034823|gb|EFT46755.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0027]
gi|397337906|gb|AFO45578.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis D32]
Length = 459
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 130/252 (51%), Gaps = 50/252 (19%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDT--GTLIALDKSKPRVTKL 126
+Q+ S+L + ++P +VLD CAAPG K THIA + G + +LD ++ +
Sbjct: 242 IQDESSMLVAPAMQIEPHHRVLDACAAPGGKTTHIATFLEAEAGGRVTSLDIHAHKIKLI 301
Query: 127 EETIKKLQLSSI-QTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP 182
E ++L ++ + Q D+ ++ + E+FDRIL+DAPCSG G ++P
Sbjct: 302 NENAQRLHVADVVQAEKLDARQVAE---------EFPAETFDRILVDAPCSGLGLMRRKP 352
Query: 183 ---MFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSL 239
AN F NL K IQ ++L++V P LK+ GI+VY TC++
Sbjct: 353 DIKYHKTANDFQNLPK-------IQLEILESV-----------APTLKQWGIMVYSTCTI 394
Query: 240 SVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNT 299
+ EEN+ V+A L +HPE E ++ +A++++ QAV++ L P T
Sbjct: 395 TSEENQEVVAAFLAKHPEFEKIEI--------VANENV----QAVVKEQELVLYPHQYMT 442
Query: 300 DTIGFFICKLRK 311
D GFFIC +RK
Sbjct: 443 D--GFFICCMRK 452
>gi|428219720|ref|YP_007104185.1| sun protein [Pseudanabaena sp. PCC 7367]
gi|427991502|gb|AFY71757.1| sun protein [Pseudanabaena sp. PCC 7367]
Length = 493
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 83/268 (30%), Positives = 132/268 (49%), Gaps = 50/268 (18%)
Query: 10 CLWLDRAGFVSVLRLPARQ--RPSLSIYCYALDILF-RGVAVEITNVLSQVPN-VALDSS 65
C W +R+ + LR+ Q RP L L L RG+A + L +PN + L
Sbjct: 219 CEWFNRSPHID-LRVNKLQIDRPQL------LQALADRGIAAQ---ALDYIPNAIRLSQG 268
Query: 66 MGILQNLPSI-------------LAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGT 112
G + NLP LAG LD QP + ++D CAAPG K TH+A LM++ G
Sbjct: 269 AGKISNLPGFELGWWVVQDASAQLAGFLLDPQPQETIIDACAAPGGKTTHLAELMDNRGK 328
Query: 113 LIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLD 172
+ A+D++ R+ K+++ +LQ++++QT ID+ ++ ++ DR+LLD
Sbjct: 329 IWAIDRAASRLKKVKQNCDRLQVTNVQTRA-----------IDLREIEDWQDYGDRLLLD 377
Query: 173 APCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGIL 232
PCSG G +A + ++I A +Q++L+ +V K +GI+
Sbjct: 378 VPCSGLGTLHRHADAR-WRQSPEQIVELAQLQQELITKAATWV-----------KPNGIM 425
Query: 233 VYCTCSLSVEENEAVIAWILHRHPEVEL 260
VY TC+L ENEA++ L H +L
Sbjct: 426 VYSTCTLHPAENEAIVTKFLAEHSHWQL 453
>gi|162605886|ref|XP_001713458.1| nucleolar protein [Guillardia theta]
gi|13794390|gb|AAK39767.1|AF083031_124 nucleolar protein [Guillardia theta]
Length = 358
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 94/289 (32%), Positives = 142/289 (49%), Gaps = 47/289 (16%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGI------------LQNLPSILAGHYLDVQPGQK 88
I+ +G+ + N + + + L+SS+ + LQ++ S+L LD +K
Sbjct: 96 IVRKGIKLCRFNHFNDLAFICLNSSISLGSTTEYLCGYYTLQSISSLLPVISLDPTTNEK 155
Query: 89 VLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRI 148
+LD+ AAPGNK T I+ M + G LI+ D K R+ L +I +L + + YD I
Sbjct: 156 ILDLAAAPGNKSTLISQFMRNNGILISNDIKKLRIKSLVNSIHRLNVDNSIIANYDGILI 215
Query: 149 NTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYANIQK 205
+ F R+LLDAPCSG G P+ N + + +N+QK
Sbjct: 216 -----------PFIMKGFHRVLLDAPCSGSGLVSHDPLIKKINKHI-----VILNSNLQK 259
Query: 206 KLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLP 265
+LL A ++ GI + I+VY TCS+SVEENE VI ++L + VE++ T
Sbjct: 260 RLLIA-----AIDACNGISPM--GNIIVYSTCSISVEENECVIQYVLSKR-NVEIISTGI 311
Query: 266 QLGMKGL-AHKDLEA-EDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKK 312
G+ GL +K++ E +RF P + D GFFICKLRKK
Sbjct: 312 DFGLPGLTTYKNIRFDESMKKCKRFYPHVHNVD------GFFICKLRKK 354
>gi|167037728|ref|YP_001665306.1| sun protein [Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|320116143|ref|YP_004186302.1| sun protein [Thermoanaerobacter brockii subsp. finnii Ako-1]
gi|166856562|gb|ABY94970.1| sun protein [Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|319929234|gb|ADV79919.1| sun protein [Thermoanaerobacter brockii subsp. finnii Ako-1]
Length = 444
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 126/247 (51%), Gaps = 40/247 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ + G+ V+D+CAAPG K THIA LM + G ++A D R+ ++E
Sbjct: 232 IQDEASMLVSKILNPKEGETVIDVCAAPGGKTTHIAQLMKNNGKVVAFDLHPHRLELIKE 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
K+L +++++T +DST +N K E D++L D PC+G G ++P
Sbjct: 292 NCKRLGITNVKTEAFDSTFVN----------KKYLEKADKVLADVPCTGIGIIRKKP--- 338
Query: 186 NANSFLNLDKKIKSYANIQ-KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
D K+K+Y + +L++ Y+ + +KK G LVY TC++ EEN
Sbjct: 339 --------DIKLKNYTRKEISELIETQYKILD----SSSKYVKKGGFLVYSTCTIGKEEN 386
Query: 245 EAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
+ VI L HP+ +LV ++ GL ++E +Q P + D GF
Sbjct: 387 QNVIMKFLKEHPDFKLVDIKAEMP-SGL---NIETASLGYVQ-----TTPLEHEID--GF 435
Query: 305 FICKLRK 311
FI KLR+
Sbjct: 436 FISKLRR 442
>gi|50365012|ref|YP_053437.1| tRNA and rRNA cytosine-C5-methylase [Mesoplasma florum L1]
gi|50363568|gb|AAT75553.1| tRNA and rRNA cytosine-C5-methylases [Mesoplasma florum L1]
Length = 425
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 127/256 (49%), Gaps = 51/256 (19%)
Query: 57 VPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIAL 116
V + A S +Q+ SIL G+ L+ G KVLDMC+APG KLTH++++M +TG +
Sbjct: 221 VKSDAYTSGQITIQDPASILVGNVLNPTKGSKVLDMCSAPGGKLTHLSMIMENTGQVTGF 280
Query: 117 DKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCS 176
+ S+ ++ +EE IK+L +I D+T IN +KE+FD ILLDAPCS
Sbjct: 281 EISENKIKLIEENIKRLDCKNISLKCGDATLIN------------EKENFDFILLDAPCS 328
Query: 177 GFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT 236
GFG I + NIQ+KLL Y LK+ G++VY T
Sbjct: 329 GFGVLKRKPEIKINNIEINNINNIVNIQEKLLDTAYYN-----------LKQQGVMVYST 377
Query: 237 CSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTD 296
C+++ EN+ I + ++ +++++ +E+Q L +
Sbjct: 378 CTINPAENQNQIKKFIEKYKDIKII-----------------SENQ---------LFGYE 411
Query: 297 RNTDTIGFFICKLRKK 312
NTD GF+ICK+ K+
Sbjct: 412 MNTD--GFYICKMIKE 425
>gi|380495954|emb|CCF31994.1| tRNA (Cytosine-5-)-methyltransferase NCL1, partial [Colletotrichum
higginsianum]
Length = 419
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 119/246 (48%), Gaps = 42/246 (17%)
Query: 81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQT 140
L+ Q ++VLDM AAPG K TH+A +M +TG ++A D SK R L I +L ++
Sbjct: 16 LEPQENERVLDMAAAPGGKTTHMAAMMKNTGVIVANDPSKQRAKGLIGNIHRLGARNVVV 75
Query: 141 HVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY 200
YD+ FDR+LLDAPCSG G ++ + +K + +
Sbjct: 76 SNYDAREFPKPMG-----------GFDRVLLDAPCSGTG----VIAKDASVKTNKTERDF 120
Query: 201 ---ANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPE 257
++QK+L+ A V+ G G +VY TCS++VEENEAV+ + L R P
Sbjct: 121 MLLPHMQKQLILAAIDSVNHHSKTG-------GYIVYSTCSVTVEENEAVVQYALSRRPN 173
Query: 258 VELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
V LV+T G +G + ++F P L T R N D GFF+ K +
Sbjct: 174 VRLVETNLPFGREGFT--------SFMGKKFDPSLKLTRRYYPHTYNVD--GFFVAKF-Q 222
Query: 312 KYGEAP 317
K+G P
Sbjct: 223 KFGPTP 228
>gi|425445544|ref|ZP_18825572.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9443]
gi|389734455|emb|CCI01900.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9443]
Length = 446
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 96/318 (30%), Positives = 147/318 (46%), Gaps = 50/318 (15%)
Query: 5 QSQCYCLWLDRAGFVSVLRLPAR-QRPSLSIYCYALDILFRGV----AVEITNVLSQVPN 59
+++ C W +R+ + + P + R +L + +I F + A +T+ L +
Sbjct: 168 ETEQLCQWFNRSPDLDIRINPLKTSREALENELESANITFNHLKLPLACRLTSGLGNIER 227
Query: 60 V-ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDK 118
+ + LQ++ + L + LD QPG+ ++D CAAPG K THIA LM D G ++A D+
Sbjct: 228 LEGFRAGNYTLQDISAQLVTYLLDPQPGETIIDACAAPGGKTTHIAELMGDRGRILACDQ 287
Query: 119 SKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGF 178
+ R+ +LE IK+L L +I+ H+ DS I DR+L+DAPCSG
Sbjct: 288 TASRLRQLEANIKRLDLKAIEIHLGDSRDRPQWCGI-----------ADRVLIDAPCSGL 336
Query: 179 G---QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC 235
G +RP + NL A Q +LL + +V K GILVY
Sbjct: 337 GTLHKRPDIRWRQTPENL----PVLAKRQGELLASAATWV-----------KPKGILVYA 381
Query: 236 TCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGP-PLIP 294
TC+L+ ENE VI L HP+ + +A D + G ++P
Sbjct: 382 TCTLNPLENERVIEQFLAAHPDWK------------MASPDSTSSFSEYYTETGAIEVLP 429
Query: 295 TDRNTDTIGFFICKLRKK 312
N D GFF+ KL K+
Sbjct: 430 HRHNQD--GFFMAKLVKE 445
>gi|157872965|ref|XP_001685003.1| putative nucleolar protein [Leishmania major strain Friedlin]
gi|68128074|emb|CAJ08197.1| putative nucleolar protein [Leishmania major strain Friedlin]
Length = 629
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 95/285 (33%), Positives = 138/285 (48%), Gaps = 44/285 (15%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RG++VE S+V +S++ I + LAGHY L Q +
Sbjct: 281 LVKRGMSVEPLEKWSKVGLQVFESNVPIAGTI-EYLAGHYMLQAAASFLPVMALAPQENE 339
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM AAPG K T+IA LM +TG L A D S+PR L +++L +++ YD T
Sbjct: 340 RVLDMSAAPGGKTTYIAQLMKNTGVLFANDVSEPRCKSLNANLQRLGVTNCIVTNYDGT- 398
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKL 207
ER+ +FDR+LLDAPCSG G ++ DK IK+ + Q K
Sbjct: 399 -------GYERV---MRNFDRVLLDAPCSGTG----------IISRDKSIKT--SKQYKD 436
Query: 208 LQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQL 267
+Q + I K G +VY TCS VEE+EA++ + L R +V++V+
Sbjct: 437 IQRASQLQRALLLSAIDACKIGGYVVYSTCSFLVEEDEAIVDFALRRR-DVQVVEMGLPF 495
Query: 268 GMKGLA-HKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
G G ++ D + R P + N D GFFICKL+K
Sbjct: 496 GRPGFTKYRHHRYHDSLELSRHYFPHV---HNMD--GFFICKLKK 535
>gi|452992003|emb|CCQ96625.1| Ribosomal RNA small subunit methyltransferase B [Clostridium
ultunense Esp]
Length = 453
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/249 (33%), Positives = 127/249 (51%), Gaps = 45/249 (18%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L + GQ+VLD CAAPG K +HIA LM D G ++A D + + +EE
Sbjct: 241 IQDESSMLVATLLKPEAGQRVLDACAAPGGKTSHIAELMKDEGEILANDIHPHKGSLIEE 300
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
K+L +SIQ D+ + ER+ K FDRIL+DAPCSG G ++P
Sbjct: 301 QKKRLGFTSIQVMTGDALTLP-------ERV---KGPFDRILIDAPCSGLGVIRRKPEI- 349
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ ++++ +Q LL+ + PLL + G+L+Y TC+++ EENE
Sbjct: 350 ---KWRKEERELSHLPELQYALLERLS-----------PLLGEKGLLIYSTCTVNPEENE 395
Query: 246 AVIAWILHRHPEVE----LVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDT 301
VI L HPE + LV LP +K +A+++ ++P D TD
Sbjct: 396 EVIDRFLSSHPEFQPDESLVNDLPSPLLK-----------EAIIRPGMLLILPGDFGTD- 443
Query: 302 IGFFICKLR 310
GFFI +L+
Sbjct: 444 -GFFIARLK 451
>gi|326480150|gb|EGE04160.1| tRNA (cytosine-5-)-methyltransferase NCL1 [Trichophyton equinum CBS
127.97]
Length = 690
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 97/303 (32%), Positives = 141/303 (46%), Gaps = 62/303 (20%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +S + L P LAGHY L QP +
Sbjct: 329 LINRGVVLEPVGKWSKVGLQVFESPV-PLGATPEYLAGHYILQAASSFLPVMALAPQPHE 387
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
++LDM AAPG K T+ + LM +TG+++A D SK R L I +L + D+
Sbjct: 388 RILDMAAAPGGKTTYASALMRNTGSILANDASKTRAKGLIGNIHRLGCKNTIVSNMDA-- 445
Query: 148 INTSSQIDIERMKLQKE--SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYA---- 201
R K FDR+LLDAPCSG G ++ D K+K+
Sbjct: 446 ----------RTAFPKAIGGFDRVLLDAPCSGTG----------VISKDPKVKTSKTERD 485
Query: 202 -----NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHP 256
++QK+LL A + G G +VY TCS++VEENE V+ + L + P
Sbjct: 486 FLALPHMQKQLLLAAIDSTNHTSKTG-------GYIVYSTCSVTVEENEGVVQYALRKRP 538
Query: 257 EVELVQT-LPQLGMKGL-AHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKKYG 314
V++V T L G G ++ + + +D+ + R P N D GFF+CKL KK G
Sbjct: 539 NVKIVDTGLGNFGTPGFKSYMNKKFDDRMPLTRR---YYPHRENVD--GFFVCKL-KKTG 592
Query: 315 EAP 317
+P
Sbjct: 593 PSP 595
>gi|217967819|ref|YP_002353325.1| sun protein [Dictyoglomus turgidum DSM 6724]
gi|217336918|gb|ACK42711.1| sun protein [Dictyoglomus turgidum DSM 6724]
Length = 430
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 119/214 (55%), Gaps = 29/214 (13%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
++Q+ S+L L+ +PG +V+D+C+APG K TH+A LM + G +I++D +K R+ +E
Sbjct: 226 VIQSEASMLPALILNPKPGNRVIDLCSAPGLKSTHLAELMKNQGKIISVDINKNRLRLVE 285
Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNA 187
E K+L +S I+T D +N S +D SFDR+LLDAPCSG G
Sbjct: 286 ENAKRLGISIIETFSQDV--LNLPSSLD--------RSFDRVLLDAPCSGLGVISHKPEI 335
Query: 188 NSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L D I + + +Q K+L+ + LLK++G +VY TC+++ ENE+V
Sbjct: 336 KWRLKRD-DIYNLSEMQVKMLE-----------RAGKLLKREGRMVYSTCTITWHENESV 383
Query: 248 IAWILHRHPEVELV------QTLPQLGMKGLAHK 275
+ L R+PE +LV + P + MK L HK
Sbjct: 384 LLQFLQRNPEFKLVNFKYKGELFPGI-MKVLPHK 416
>gi|443926035|gb|ELU44783.1| nucleolar RNA m(5)C methyltransferase [Rhizoctonia solani AG-1 IA]
Length = 915
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 92/297 (30%), Positives = 139/297 (46%), Gaps = 47/297 (15%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E + V +SS+ I P LAGHY L QP +
Sbjct: 570 LINRGVNLEPIGKWTNVGLQVFESSVPIGAT-PEYLAGHYMLQAASSFLPVIALAPQPNE 628
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM +APG K TH+A LM +TG + A D +K R L + +L ++ YD
Sbjct: 629 RVLDMASAPGGKTTHMAALMQNTGLIFANDANKARTKSLSANVHRLGCKNVVVCSYDGR- 687
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKL 207
E K+ FDR+LLDAPCSG G + S + +++QK+L
Sbjct: 688 ---------EFPKVLG-GFDRVLLDAPCSGTG---VISKDASVKTNKRDFTLLSHLQKQL 734
Query: 208 LQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQL 267
+ V G G +VY TCS++V+ENE+V+ + L + P V+LV T +
Sbjct: 735 ILCAIDSVDASSKTG-------GYIVYSTCSVTVDENESVVDYALRKRPNVKLVDTGLEF 787
Query: 268 GMKGLAHKDLEAEDQ--AVMQRFGPPLIPTDRNTDTIGFFICKL----RKKYGEAPE 318
G+ G + D+ ++ +RF P + D GF++ K+ R+K GE E
Sbjct: 788 GVPGFTKFRGKKFDEKLSLTRRFYPHVHNMD------GFYVAKIKIEKRQKKGEDKE 838
>gi|433462308|ref|ZP_20419895.1| Sun protein [Halobacillus sp. BAB-2008]
gi|432188996|gb|ELK46138.1| Sun protein [Halobacillus sp. BAB-2008]
Length = 448
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/251 (33%), Positives = 117/251 (46%), Gaps = 44/251 (17%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L +D+ G VLD C+APG K THIA M D G ++A D + + +E+
Sbjct: 235 VQDQSSMLVAEMMDLASGMTVLDACSAPGGKTTHIAEKMADEGEILAYDLHEKKAKLVEK 294
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
K+LQL+SI DS ++ K E FDRILLDAPCSG G +P
Sbjct: 295 KAKQLQLTSITAGQADSRKLGE---------KHAAEHFDRILLDAPCSGLGVLRGKPDI- 344
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ ++ I S IQ LL + PLLK G LVY TC++ ENE
Sbjct: 345 ---KYHKTEQDIYSLRLIQDDLLDEM-----------APLLKSGGKLVYSTCTVDRHENE 390
Query: 246 AVIAWILHRHPEVEL----VQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDT 301
+ L +HPE + + LP G+ + G L P + +TD
Sbjct: 391 EAVKHFLSKHPEFRVDPSFKEDLPPALRDGIG-----------LSEHGLQLFPHEWDTD- 438
Query: 302 IGFFICKLRKK 312
GFF+ +L K+
Sbjct: 439 -GFFLTRLIKQ 448
>gi|315049127|ref|XP_003173938.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Arthroderma gypseum CBS
118893]
gi|311341905|gb|EFR01108.1| tRNA (cytosine-5-)-methyltransferase NCL1 [Arthroderma gypseum CBS
118893]
Length = 696
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 97/303 (32%), Positives = 141/303 (46%), Gaps = 62/303 (20%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +S + L P LAGHY L QP +
Sbjct: 329 LINRGVVLEPVGKWSKVGLQVFESPV-PLGATPEYLAGHYILQAASSFLPVMALAPQPHE 387
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
++LDM AAPG K T+ + LM +TG+++A D SK R L I +L + D+
Sbjct: 388 RILDMAAAPGGKTTYASALMRNTGSILANDASKTRAKGLIGNIHRLGCKNTIVSNMDA-- 445
Query: 148 INTSSQIDIERMKLQKE--SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYA---- 201
R K FDR+LLDAPCSG G ++ D K+K+
Sbjct: 446 ----------RTAFPKAIGGFDRVLLDAPCSGTG----------VISKDPKVKTSKTERD 485
Query: 202 -----NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHP 256
++QK+LL A + G G +VY TCS++VEENE V+ + L + P
Sbjct: 486 FLALPHMQKQLLLAAIDSTNHASKTG-------GYIVYSTCSVTVEENEGVVQYALRKRP 538
Query: 257 EVELVQT-LPQLGMKGL-AHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKKYG 314
V++V T L G G ++ + + +D+ + R P N D GFF+CKL KK G
Sbjct: 539 NVKIVDTGLGSFGTPGFKSYMNKKFDDKMPLTRR---YYPHRENVD--GFFVCKL-KKIG 592
Query: 315 EAP 317
+P
Sbjct: 593 PSP 595
>gi|167040389|ref|YP_001663374.1| sun protein [Thermoanaerobacter sp. X514]
gi|256752273|ref|ZP_05493136.1| sun protein [Thermoanaerobacter ethanolicus CCSD1]
gi|300914473|ref|ZP_07131789.1| sun protein [Thermoanaerobacter sp. X561]
gi|307724291|ref|YP_003904042.1| sun protein [Thermoanaerobacter sp. X513]
gi|166854629|gb|ABY93038.1| sun protein [Thermoanaerobacter sp. X514]
gi|256748841|gb|EEU61882.1| sun protein [Thermoanaerobacter ethanolicus CCSD1]
gi|300889408|gb|EFK84554.1| sun protein [Thermoanaerobacter sp. X561]
gi|307581352|gb|ADN54751.1| sun protein [Thermoanaerobacter sp. X513]
Length = 444
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 126/247 (51%), Gaps = 40/247 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ + G+ V+D+CAAPG K THIA LM + G ++A D R+ ++E
Sbjct: 232 IQDEASMLVSKILNPKEGETVIDVCAAPGGKTTHIAQLMKNNGKVVAFDLHPHRLELIKE 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
K+L +++++T +DST +N K E D++L D PC+G G ++P
Sbjct: 292 NCKRLGITNVKTEAFDSTFVN----------KKYLEKADKVLADVPCTGIGIIRKKP--- 338
Query: 186 NANSFLNLDKKIKSYANIQ-KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
D K+K+Y + +L++ Y+ + +KK G LVY TC++ EEN
Sbjct: 339 --------DIKLKNYTRKEISELIETQYKILD----SSSKYVKKGGFLVYSTCTIGKEEN 386
Query: 245 EAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
+ VI L HP+ +LV ++ GL ++E +Q P + D GF
Sbjct: 387 QNVIMKFLKEHPDFKLVDIKAEMP-SGL---NIETASLGYVQ-----TTPLEHEID--GF 435
Query: 305 FICKLRK 311
FI KLR+
Sbjct: 436 FISKLRR 442
>gi|226290863|gb|EEH46291.1| Nop16-like protein NOP2 [Paracoccidioides brasiliensis Pb18]
Length = 660
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 98/308 (31%), Positives = 141/308 (45%), Gaps = 56/308 (18%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +SS+ L P LAGHY L QP +
Sbjct: 318 LINRGVVLEPVGKWSKVGLQVFESSV-PLGATPEYLAGHYILQAASSFLPVMALAPQPNE 376
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
++LDM AAPG K T+I+ LM +TG ++A D SK R L I +L + D+
Sbjct: 377 RILDMAAAPGGKTTYISALMRNTGCVLANDASKHRAKGLIGNIHRLGCKNTIVSHLDAG- 435
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYANIQ 204
E FDRILLDAPCSG G + P + + ++ + ++Q
Sbjct: 436 ---------EAFPKILGGFDRILLDAPCSGTGVISKDPSVKTSKT----ERDFLALPHMQ 482
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT- 263
K+LL A G G +VY TCS++VEENE V+ + L + P V++V T
Sbjct: 483 KQLLLAAIDSTDHASKTG-------GYIVYSTCSVTVEENEGVVQYALRKRPNVKIVDTG 535
Query: 264 LPQLGMKGLAH---KDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKKYGEAPEIY 320
L G G K + E A+ +R+ P N D GF++CKL+K
Sbjct: 536 LGNFGTPGFKSYMGKKFD-EKMALTRRY----YPHRENVD--GFYVCKLKK-------TG 581
Query: 321 IHPHLNDC 328
+ P+ ND
Sbjct: 582 LSPYANDT 589
>gi|298492855|ref|YP_003723032.1| sun protein ['Nostoc azollae' 0708]
gi|298234773|gb|ADI65909.1| sun protein ['Nostoc azollae' 0708]
Length = 446
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 93/327 (28%), Positives = 146/327 (44%), Gaps = 69/327 (21%)
Query: 11 LWLDRAGFVSVLRLPA--RQRPSLSIYCYAL-------DILFRGVAVEITNVLSQVPNVA 61
+WL++ G RL A + P++ + L + F+ V + + +
Sbjct: 158 VWLEQLGLKETERLCAWMNKTPTIDLRVNILRSSLEKVESAFKSAGVLVRPIPYLPQGLR 217
Query: 62 LDSSMGILQNLPSILAG-------------HYLDVQPGQKVLDMCAAPGNKLTHIALLMN 108
L SS G ++NLP G H LD +PG V+D+CAAPG K THI LM
Sbjct: 218 LISSTGPIKNLPGFREGWWTVQDSSAQLVSHLLDPKPGNVVIDVCAAPGGKTTHIGELMG 277
Query: 109 DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDR 168
D G + A D++ R+ +L+E +++L L SI+ DS + + I D
Sbjct: 278 DKGKIWACDQTASRLRRLKENVQRLHLESIEICTGDSRNLTQFNNI-----------ADC 326
Query: 169 ILLDAPCSGFGQRPMFYNANS-FLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLK 227
+LLDAPCSG G M +A++ + ++ + +QK+L+ F+ K
Sbjct: 327 VLLDAPCSGLGT--MHRHADARWRQTPSSVQELSQLQKELISHTANFI-----------K 373
Query: 228 KDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQR 287
G+LVY TC+L ENE VI+ L +P H +E+ ++
Sbjct: 374 VGGVLVYATCTLHPMENEEVISQFLAVNP-----------------HWQIESPGSDLVDI 416
Query: 288 FGPPLI---PTDRNTDTIGFFICKLRK 311
P + P R+ D GFF+ +LRK
Sbjct: 417 ASPGWLKVWPHQRDMD--GFFMVRLRK 441
>gi|146094454|ref|XP_001467280.1| putative nucleolar protein [Leishmania infantum JPCM5]
gi|134071645|emb|CAM70335.1| putative nucleolar protein [Leishmania infantum JPCM5]
Length = 628
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 96/291 (32%), Positives = 135/291 (46%), Gaps = 56/291 (19%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RG+ VE S+V +S++ I + LAGHY L Q +
Sbjct: 280 LVKRGMNVEPLEKWSKVGLQVFESNVPIAGTI-EYLAGHYMLQAAASFLPVMALAPQENE 338
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM AAPG K T+IA LM +TG L A D S+PR L +++L +++ YD T
Sbjct: 339 RVLDMSAAPGGKTTYIAQLMKNTGVLFANDVSEPRCKSLNANLQRLGVTNCIVTNYDGT- 397
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKL 207
ER+ +FDR+LLDAPCSG G ++ DK IK+ + Q +
Sbjct: 398 -------GYERV---MRNFDRVLLDAPCSGTG----------IISRDKSIKT--SKQHED 435
Query: 208 LQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQL 267
+Q + I K G +VY TCS VEE+EA++ + L R +V++V+
Sbjct: 436 IQRASQLQRALLLSAIDACKIGGYVVYSTCSFLVEEDEAIVDFALRRR-DVQVVEMGLPF 494
Query: 268 GMKGLA-------HKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
G G H LE F P N D GFFICKL+K
Sbjct: 495 GRPGFTKYRHHRYHDSLE---------FSRRYFPHVHNMD--GFFICKLKK 534
>gi|443323050|ref|ZP_21052061.1| ribosomal RNA small subunit methyltransferase RsmB [Gloeocapsa sp.
PCC 73106]
gi|442787231|gb|ELR96953.1| ribosomal RNA small subunit methyltransferase RsmB [Gloeocapsa sp.
PCC 73106]
Length = 451
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 114/215 (53%), Gaps = 32/215 (14%)
Query: 54 LSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTL 113
+ Q+P D ++Q+ + L H LD QPG+K++D CAAPG K THIA LM D G +
Sbjct: 227 IQQLP--GYDQGWWVVQDSSAQLVTHLLDPQPGEKIIDACAAPGGKTTHIAELMGDVGEV 284
Query: 114 IALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDA 173
A+D+S R+ K++E + +LQL+SI H DS ++S++ E DR+L+DA
Sbjct: 285 WAIDRSFKRLKKVQENLDRLQLNSISLHHLDS----STSELPQE--------CDRVLVDA 332
Query: 174 PCSGFG---QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDG 230
PCSG G +RP + ++I + +Q+++L +V K G
Sbjct: 333 PCSGNGTLHKRPDL----RWRQTPEEIPNLVALQRQILNQAATWV-----------KPGG 377
Query: 231 ILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLP 265
LVY TC+L+ ENE +I L H + ++ P
Sbjct: 378 KLVYATCTLNPPENEDIIQSFLANHSQWSILPPSP 412
>gi|326468870|gb|EGD92879.1| nucleolar protein NOP2 [Trichophyton tonsurans CBS 112818]
Length = 690
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 97/303 (32%), Positives = 141/303 (46%), Gaps = 62/303 (20%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +S + L P LAGHY L QP +
Sbjct: 329 LINRGVVLEPVGKWSKVGLQVFESPV-PLGATPEYLAGHYILQAASSFLPVMALAPQPHE 387
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
++LDM AAPG K T+ + LM +TG+++A D SK R L I +L + D+
Sbjct: 388 RILDMAAAPGGKTTYASALMRNTGSILANDASKTRAKGLIGNIHRLGCKNTIVSNMDA-- 445
Query: 148 INTSSQIDIERMKLQKE--SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYA---- 201
R K FDR+LLDAPCSG G ++ D K+K+
Sbjct: 446 ----------RTAFPKAIGGFDRVLLDAPCSGTG----------VISKDPKVKTSKTERD 485
Query: 202 -----NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHP 256
++QK+LL A + G G +VY TCS++VEENE V+ + L + P
Sbjct: 486 FLALPHMQKQLLLAAIDSTNHTSKTG-------GYIVYSTCSVTVEENEGVVQYALRKRP 538
Query: 257 EVELVQT-LPQLGMKGL-AHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKKYG 314
V++V T L G G ++ + + +D+ + R P N D GFF+CKL KK G
Sbjct: 539 NVKIVDTGLGNFGTPGFKSYMNKKFDDRMPLTRR---YYPHRENVD--GFFVCKL-KKTG 592
Query: 315 EAP 317
+P
Sbjct: 593 PSP 595
>gi|222099955|ref|YP_002534523.1| Sun protein [Thermotoga neapolitana DSM 4359]
gi|221572345|gb|ACM23157.1| Sun protein [Thermotoga neapolitana DSM 4359]
Length = 431
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 114/215 (53%), Gaps = 25/215 (11%)
Query: 61 ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSK 120
+ + +Q S + +D++P KVLD C+APG K T IA LM D G ++A D S
Sbjct: 213 VITEGLATVQGESSQIVPLLMDLEPNMKVLDTCSAPGGKTTFIAELMKDKGEILATDVSM 272
Query: 121 PRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQ 180
R+ +E+ +++L+LSS++ + D+ R+ Q + FDRIL+DAPCS G
Sbjct: 273 ERLQLVEKHVRRLKLSSVKIKLADAERLTEFIQ----------DEFDRILVDAPCSSLGT 322
Query: 181 RPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLS 240
N L KK + K+L + +R +S Q LLKK GIL+Y TC+++
Sbjct: 323 A---RNHPEVLRRAKKEEF-----KELSEKQFRILS----QSWKLLKKGGILLYSTCTIT 370
Query: 241 VEENEAVIAWILHRHPEVELV---QTLPQLGMKGL 272
EEN VI + P+VE++ + L G++GL
Sbjct: 371 KEENTEVIKAFAEQTPDVEVIDLRKRLEDYGVEGL 405
>gi|326693796|ref|ZP_08230801.1| 16S rRNA methyltransferase B [Leuconostoc argentinum KCTC 3773]
Length = 452
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/252 (33%), Positives = 134/252 (53%), Gaps = 46/252 (18%)
Query: 69 LQNLPSILAGHYLDVQPGQK-VLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
LQ+ ++L + + P K VLD AAPG K T IA L+ D ++ALD ++ +E
Sbjct: 238 LQDESAMLPVESMHLTPAVKNVLDAAAAPGGKTTQIAALVADDAKILALDVHPHKIKLIE 297
Query: 128 ETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPM 183
+ +LQ++ I T V D+ ++ T FDRIL+DAPCSGFG ++P
Sbjct: 298 QNATRLQVADRIDTQVLDARKVPTEVAT----------KFDRILVDAPCSGFGLLRRKPE 347
Query: 184 FYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEE 243
+ + +++ A +Q ++L +V + V+ ++G++VY TC++ +E
Sbjct: 348 IRYDKTL----EDVQNLARLQGEILDSVSQNVA-----------ENGMIVYSTCTILRQE 392
Query: 244 NEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQ-AVMQRFGPPLIPTDRNTDTI 302
N+ VIA L +HPE ELV+T AH DL+A+ Q AV+ + P D +TD
Sbjct: 393 NDDVIAQFLAKHPEFELVKT-------QTAH-DLKADRQKAVLHIY-----PNDYHTD-- 437
Query: 303 GFFICKLRKKYG 314
GFF+ L+KK G
Sbjct: 438 GFFVATLKKKSG 449
>gi|398019893|ref|XP_003863110.1| nucleolar protein, putative [Leishmania donovani]
gi|322501342|emb|CBZ36420.1| nucleolar protein, putative [Leishmania donovani]
Length = 628
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 96/291 (32%), Positives = 135/291 (46%), Gaps = 56/291 (19%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RG+ VE S+V +S++ I + LAGHY L Q +
Sbjct: 280 LVKRGMNVEPLEKWSKVGLQVFESNVPIAGTI-EYLAGHYMLQAAASFLPVMALAPQENE 338
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM AAPG K T+IA LM +TG L A D S+PR L +++L +++ YD T
Sbjct: 339 RVLDMSAAPGGKTTYIAQLMKNTGVLFANDVSEPRCKSLNANLQRLGVTNCIVTNYDGT- 397
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKL 207
ER+ +FDR+LLDAPCSG G ++ DK IK+ + Q +
Sbjct: 398 -------GYERV---MRNFDRVLLDAPCSGTG----------IISRDKSIKT--SKQHED 435
Query: 208 LQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQL 267
+Q + I K G +VY TCS VEE+EA++ + L R +V++V+
Sbjct: 436 IQRASQLQRALLLSAIDACKIGGYVVYSTCSFLVEEDEAIVDFALRRR-DVQVVEMGLPF 494
Query: 268 GMKGLA-------HKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
G G H LE F P N D GFFICKL+K
Sbjct: 495 GRPGFTKYRHHRYHDSLE---------FSRRYFPHVHNMD--GFFICKLKK 534
>gi|33860983|ref|NP_892544.1| Sun protein (Fmu protein) [Prochlorococcus marinus subsp. pastoris
str. CCMP1986]
gi|33639715|emb|CAE18885.1| Sun protein (Fmu protein) [Prochlorococcus marinus subsp. pastoris
str. CCMP1986]
Length = 437
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 132/237 (55%), Gaps = 38/237 (16%)
Query: 53 VLSQVPN-VALDSSMGILQNLPSILAGHY-------------LDVQPGQKVLDMCAAPGN 98
+SQ+ N +AL+S+ ++ LP G + L+ G+K+LD C+APG+
Sbjct: 210 AISQLKNGIALNSNPRSIKKLPGYSDGLWVVQDRSSQWVAPLLNPMKGEKILDACSAPGS 269
Query: 99 KLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIER 158
K TH+A L ND ++A+D+S+ R+ L+ +++L + S++T D+T + +DI+
Sbjct: 270 KTTHLAQLANDDAEILAVDRSEKRLKILQSNLERLNIKSVKTLKADATNL-----VDIQP 324
Query: 159 MKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDK-KIKSYANIQKKLLQAVYRFVSL 217
+ FD+IL+DAPCSG G + N +S +L K KI +Q++LL++V
Sbjct: 325 NLIS--YFDKILIDAPCSGIGT--LARNPDSRWSLSKDKINQLILLQERLLESV------ 374
Query: 218 FDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVEL---VQTLPQLGMKG 271
+PLLK++G LVY TC++ EEN +I L ++ E++L Q LP+ G
Sbjct: 375 -----LPLLKRNGTLVYSTCTICPEENNFLIKRFLTKNKEIKLDSEKQILPKFDEPG 426
>gi|321252144|ref|XP_003192304.1| nucleolar RNA m(5)C methyltransferase; Nop2p [Cryptococcus gattii
WM276]
gi|317458772|gb|ADV20517.1| Nucleolar RNA m(5)C methyltransferase, putative; Nop2p
[Cryptococcus gattii WM276]
Length = 696
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 94/301 (31%), Positives = 147/301 (48%), Gaps = 55/301 (18%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +S + I P LAGHY L QP +
Sbjct: 359 LINRGVTLEPIGKWSKVGLQVFESPVPIGAT-PEYLAGHYMLQAASSFLPVIALAPQPNE 417
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM +APG K T+I+ L+ +TG + A D +K R L + ++ ++ YD+
Sbjct: 418 RVLDMASAPGGKTTYISALLQNTGIVFANDSNKARTKSLTANVHRMGCKNVVVCNYDAR- 476
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY---ANIQ 204
E K+ FDR+LLDAPCSG G + ++ + ++K + + A++Q
Sbjct: 477 ---------EFPKVMG-GFDRVLLDAPCSGTG----VISKDASVKVNKTERDFQLLAHLQ 522
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL 264
K+L+ V+ P G LVY TCS++V+ENE+V+ + L + P V+LV+T
Sbjct: 523 KQLILCAIDSVN-------PNSSTGGYLVYSTCSVTVDENESVVDYALRKRPNVKLVETG 575
Query: 265 PQLGMKGLAHKDLEAED----QAVMQRFGPPLIPTDRNTDTIGFFICKL----RKKYGEA 316
G+ G K E ++ ++ +RF P N D GFF+ K RKK +A
Sbjct: 576 LDFGVHGF--KSFEGKNFHSSVSLTRRF----YPHKHNMD--GFFVAKFKVEPRKKLTKA 627
Query: 317 P 317
P
Sbjct: 628 P 628
>gi|427711378|ref|YP_007060002.1| ribosomal RNA small subunit methyltransferase RsmB [Synechococcus
sp. PCC 6312]
gi|427375507|gb|AFY59459.1| ribosomal RNA small subunit methyltransferase RsmB [Synechococcus
sp. PCC 6312]
Length = 458
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/250 (31%), Positives = 123/250 (49%), Gaps = 38/250 (15%)
Query: 63 DSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPR 122
D +Q+ + L + LD QPG+ ++D CAAPG K THIA M D GT+IALD+ R
Sbjct: 243 DKGWWSVQDAAAQLVTYLLDPQPGETIIDACAAPGGKTTHIAERMQDRGTVIALDRVASR 302
Query: 123 VTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRP 182
+ KL++ ++LQL+ +Q + DST+I T + DR+L+DAPCSG G
Sbjct: 303 LRKLKQNQQRLQLTCLQAQLADSTQIQTMLPL-----------ADRVLIDAPCSGLGTLH 351
Query: 183 MFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVE 242
+A + + ++Q +LL+ +V K G++VY TCSL +
Sbjct: 352 RHADAR-WRQTPTTLAELVSLQAQLLENAATWV-----------KPGGLMVYATCSLHPD 399
Query: 243 ENEAVIAWILHRHPEVELVQ-TLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDT 301
EN+ + L HP + LP DL+ + Q +Q + P + D
Sbjct: 400 ENQTQVENFLKAHPNWHIAPLPLP------FPRPDLQ-QAQGWLQAW-----PQRQQMD- 446
Query: 302 IGFFICKLRK 311
GFF+ +L++
Sbjct: 447 -GFFMVRLQR 455
>gi|303388173|ref|XP_003072321.1| NOL1/NOL2/sun tRNA/rRNA cytosine-C5-methylase [Encephalitozoon
intestinalis ATCC 50506]
gi|303301460|gb|ADM10961.1| NOL1/NOL2/sun tRNA/rRNA cytosine-C5-methylase [Encephalitozoon
intestinalis ATCC 50506]
Length = 306
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/289 (28%), Positives = 135/289 (46%), Gaps = 50/289 (17%)
Query: 42 LFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQK 88
L RG V+I ++ + S + P LAG+Y ++++ G
Sbjct: 51 LLRGRGVDIDDLSWTDSGCVIFKSSVPIGATPEYLAGYYCLQGAASMLPVLNMELKEGLT 110
Query: 89 VLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRI 148
V+D+CAAPG K THIA LM +TGT+ A D ++ R+ L+ ++++ + + D ++
Sbjct: 111 VVDLCAAPGGKTTHIAALMENTGTIYANDMNEERIAGLKSNVQRMGVKNCIIMNMDGRKV 170
Query: 149 NTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYANIQK 205
N DR+L+DAPCSG G + P + +D+ + +QK
Sbjct: 171 NVG-------------KVDRVLVDAPCSGTGVISKDPSVKTNRTRSEIDRMV----TLQK 213
Query: 206 KLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLP 265
+L+ G +L+ GIL+Y TCS+ V+ENE V+ ++L++ P + Q
Sbjct: 214 ELI-----------LHGFEMLRPGGILMYSTCSVLVKENEEVVNYLLNKCPSARMAQCEI 262
Query: 266 QLGMKG-LAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKKY 313
+G G ++ K M R + P N D GFF K++KKY
Sbjct: 263 DIGKDGFMSFKGRNYNGSLKMAR---RIYPHVHNMD--GFFYAKIQKKY 306
>gi|358389714|gb|EHK27306.1| hypothetical protein TRIVIDRAFT_114247, partial [Trichoderma virens
Gv29-8]
Length = 684
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 140/291 (48%), Gaps = 51/291 (17%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V ++++ L P LAGHY L QP +
Sbjct: 321 LINRGVTLEPVGKWSKVGLQIFEANV-PLGATPEYLAGHYIIQAAASFLPVMALSPQPNE 379
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM +APG K T+ + +MN+TG + A D +K R L + +L + ++ YD
Sbjct: 380 RVLDMASAPGGKTTYCSAMMNNTGIVFANDPNKERAKGLIGNVARLGVRNVIVCSYDGR- 438
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANIQKK 206
+ R+ FDR+LLDAPCSG G + + + N D+K S ++QK+
Sbjct: 439 -------EFPRV---MGGFDRVLLDAPCSGTGV--ISKDPSVKTNKDEKDFISLPHMQKQ 486
Query: 207 LLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQ 266
LL + V+ G G LVY TCS++VEENE+V+A+ L R P V+LV
Sbjct: 487 LLLSAIDSVNHASETG-------GFLVYSTCSVTVEENESVVAYALSRRPNVKLVDAGIP 539
Query: 267 LGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
G +G + ++F P L T R N D GF++ K +K
Sbjct: 540 FGKEGFT--------SYMGKKFHPSLKLTRRFYPHAHNID--GFYVAKFQK 580
>gi|339450324|ref|ZP_08653694.1| 16S rRNA methyltransferase B [Leuconostoc lactis KCTC 3528]
Length = 350
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/252 (32%), Positives = 132/252 (52%), Gaps = 46/252 (18%)
Query: 69 LQNLPSILAGHYLDVQPGQK-VLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
LQ+ ++L + + P K VLD AAPG K T IA L+ D ++ALD ++ +E
Sbjct: 136 LQDESAMLPVESMHLTPAVKNVLDAAAAPGGKTTQIAALVADDAQILALDVHPHKIKLIE 195
Query: 128 ETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPM 183
+ +LQ++ I T V D+ ++ T FDRIL+DAPCSGFG ++P
Sbjct: 196 QNATRLQVADRIATQVLDARKVLTEVAT----------KFDRILVDAPCSGFGLLRRKPE 245
Query: 184 FYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEE 243
+ + +++ A +Q ++L +V V+ ++G++VY TC++ +E
Sbjct: 246 IRYDKTL----EDVQNLARLQGEILDSVSENVA-----------ENGMIVYSTCTILRQE 290
Query: 244 NEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQ-AVMQRFGPPLIPTDRNTDTI 302
N+ VIA L +HPE ELV+T +DL+A+ Q AV+ + P D +TD
Sbjct: 291 NDDVIAQFLAKHPEFELVKTQTA--------RDLKADRQEAVLHIY-----PNDYHTD-- 335
Query: 303 GFFICKLRKKYG 314
GFF+ L+KK G
Sbjct: 336 GFFVATLKKKSG 347
>gi|358401369|gb|EHK50675.1| hypothetical protein TRIATDRAFT_157738 [Trichoderma atroviride IMI
206040]
Length = 681
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 139/291 (47%), Gaps = 51/291 (17%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V ++++ L P LAGHY L QP +
Sbjct: 322 LINRGVTLEPVGKWSKVGLQIFEANV-PLGATPEYLAGHYIIQAAASFLPVMALSPQPNE 380
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM +APG K T+ + +MN+TG + A D +K R L + +L + ++ YD
Sbjct: 381 RVLDMASAPGGKTTYCSAMMNNTGMVFANDPNKQRAKGLIGNVARLGVRNVIVCSYDGR- 439
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANIQKK 206
+ R+ FDR+LLDAPCSG G + + + N D+K S ++QK+
Sbjct: 440 -------EFPRV---MGGFDRVLLDAPCSGTGV--ISKDPSVKTNKDEKDFISLPHMQKQ 487
Query: 207 LLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQ 266
LL + V+ G G LVY TCS+++EENE+V+A+ L R P V LV
Sbjct: 488 LLLSAIDSVNHASETG-------GFLVYSTCSVTIEENESVVAYALSRRPNVRLVDAGIP 540
Query: 267 LGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
G +G + +RF P L T R N D GF++ K +K
Sbjct: 541 FGKEGFT--------SYMGKRFHPSLKLTRRFYPHAHNID--GFYVAKFQK 581
>gi|123965723|ref|YP_001010804.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9515]
gi|123200089|gb|ABM71697.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9515]
Length = 437
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/268 (30%), Positives = 143/268 (53%), Gaps = 44/268 (16%)
Query: 28 QRPSLSIYCYALDILFRGVAVEITNV------LSQVPN-VALDSSMGILQNLPSILAGHY 80
++P++ + +L F + E+ ++Q+ N VAL+S+ ++NLP G +
Sbjct: 179 KKPTIDLRINSLKTNFNKILKELNECNIQAEPINQLNNGVALNSNPRSIKNLPGYKDGLW 238
Query: 81 -------------LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
L+ + G+K+LD C+APG+K TH+A L+ND ++A+D+S+ R+ L+
Sbjct: 239 VVQDRSSQWVAPLLNPKKGEKILDACSAPGSKTTHLAALVNDDAEILAVDRSEKRLKILQ 298
Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNA 187
+++L + S++T D+T + IDI+ FD+IL+DAPCSG G N
Sbjct: 299 SNLERLNIKSVKTLEADATTL-----IDIKPN--LASYFDKILIDAPCSGIGT--FARNP 349
Query: 188 NSFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEA 246
++ +L K KI +Q+ LL +++ PLLKK+G LVY TC++ +EN
Sbjct: 350 DTRWSLSKDKINQLIILQEGLLDSIF-----------PLLKKNGTLVYSTCTICPDENNL 398
Query: 247 VIAWILHRHPEVEL---VQTLPQLGMKG 271
+I L ++ E++L Q LP+ G
Sbjct: 399 LIRRFLSKNKELKLDSERQILPRFDKPG 426
>gi|390440194|ref|ZP_10228542.1| Ribosomal RNA small subunit methyltransferase B [Microcystis sp.
T1-4]
gi|389836395|emb|CCI32668.1| Ribosomal RNA small subunit methyltransferase B [Microcystis sp.
T1-4]
Length = 446
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 96/317 (30%), Positives = 148/317 (46%), Gaps = 48/317 (15%)
Query: 5 QSQCYCLWLDRAGFVSVLRLPAR-QRPSLSIYCYALDILFRGV----AVEITNVLSQVPN 59
+++ C W +R+ + + P + R +L + +I F + A +T+ L +
Sbjct: 168 ETEQLCQWFNRSPDLDIRINPLKTSREALENELESANITFNHLKLPLACRLTSGLGNIER 227
Query: 60 V-ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDK 118
+ + LQ++ + L + LD QPG+ ++D CAAPG K THIA LM D G ++A D+
Sbjct: 228 LEGFRAGNYTLQDISAQLVTYLLDPQPGETIIDACAAPGGKTTHIAELMGDRGRILACDQ 287
Query: 119 SKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGF 178
+ R+ +LE IK+L L +I+ H+ DS I DR+L+DAPCSG
Sbjct: 288 TASRLRQLEANIKRLDLKAIEIHLGDSRDRPQWCGI-----------ADRVLIDAPCSGL 336
Query: 179 G---QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC 235
G +RP + NL A Q +LL + +V K GILVY
Sbjct: 337 GTLHKRPDIRWRQTPENL----PVLAKRQGELLASAATWV-----------KPKGILVYA 381
Query: 236 TCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPT 295
TC+L ENE VI L HP+ ++ P + + E A+ ++P
Sbjct: 382 TCTLDPLENERVIEQFLAAHPDWKMAP--PD---SNSSFSEYYTETGAI------EVLPH 430
Query: 296 DRNTDTIGFFICKLRKK 312
N D GFF+ KL K+
Sbjct: 431 RHNQD--GFFMAKLVKE 445
>gi|58263482|ref|XP_569151.1| nucleolus protein [Cryptococcus neoformans var. neoformans JEC21]
gi|134108332|ref|XP_777117.1| hypothetical protein CNBB3490 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259802|gb|EAL22470.1| hypothetical protein CNBB3490 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57223801|gb|AAW41844.1| nucleolus protein, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 695
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 93/301 (30%), Positives = 147/301 (48%), Gaps = 55/301 (18%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +S + I P LAGHY L QP +
Sbjct: 358 LINRGVTLEPIGKWSKVGLQVFESPVPIGAT-PEYLAGHYMLQAASSFLPVIALAPQPNE 416
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM +APG K T+I+ L+ +TG + A D +K R L + ++ ++ YD+
Sbjct: 417 RVLDMASAPGGKTTYISALLQNTGIVFANDSNKARTKSLTANVHRMGCKNVVVCNYDAR- 475
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY---ANIQ 204
E K+ FDR+LLDAPCSG G + ++ + ++K + + A++Q
Sbjct: 476 ---------EFPKVMG-GFDRVLLDAPCSGTG----VISKDASVKVNKTERDFQLLAHLQ 521
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL 264
K+L+ V+ P G +VY TCS++V+ENE+V+ + L + P V+LV+T
Sbjct: 522 KQLILCAIDSVN-------PNSSTGGYVVYSTCSVTVDENESVVDYALRKRPNVKLVETG 574
Query: 265 PQLGMKGLAHKDLEAED----QAVMQRFGPPLIPTDRNTDTIGFFICKL----RKKYGEA 316
G+ G K E ++ ++ +RF P N D GFF+ K RKK +A
Sbjct: 575 LDFGVHGF--KSFEGKNFHSSVSLTRRF----YPHKHNMD--GFFVAKFKVEPRKKLTKA 626
Query: 317 P 317
P
Sbjct: 627 P 627
>gi|425436930|ref|ZP_18817360.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9432]
gi|389678290|emb|CCH92851.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9432]
Length = 446
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/266 (31%), Positives = 130/266 (48%), Gaps = 35/266 (13%)
Query: 5 QSQCYCLWLDRAGFVSVLRLPAR-QRPSLSIYCYALDILFRGV----AVEITNVLSQVPN 59
+++ C W +R+ + + P + R +L + +I F + A +T+ L +
Sbjct: 168 ETEQLCQWFNRSPDLDIRINPLKTSREALENELESANITFHHLKLPLACRLTSGLGNIER 227
Query: 60 V-ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDK 118
+ + LQ++ + L + LD QPG+ ++D CAAPG K THIA LM D G ++A D+
Sbjct: 228 LEGFRAGNYTLQDISAQLVTYLLDPQPGETIIDACAAPGGKTTHIAELMGDQGRILACDQ 287
Query: 119 SKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGF 178
+ R+ +LE IK+L L +I+ H+ DS I DR+L+DAPCSG
Sbjct: 288 TASRLRQLEANIKRLDLKAIEIHLGDSRDRPQWCGI-----------ADRVLIDAPCSGL 336
Query: 179 G---QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC 235
G +RP + NL A Q +LL + +V K GILVY
Sbjct: 337 GTLHKRPDIRWRQTPENL----PVLAKRQGELLASAATWV-----------KPKGILVYA 381
Query: 236 TCSLSVEENEAVIAWILHRHPEVELV 261
TC+L+ ENE VI L HP+ ++
Sbjct: 382 TCTLNPLENERVIEQFLAAHPDWKMA 407
>gi|257417249|ref|ZP_05594243.1| fmu family protein [Enterococcus faecalis ARO1/DG]
gi|307292139|ref|ZP_07572005.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0411]
gi|422696070|ref|ZP_16754047.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX4244]
gi|257159077|gb|EEU89037.1| fmu family protein [Enterococcus faecalis ARO1/DG]
gi|306496792|gb|EFM66343.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0411]
gi|315146584|gb|EFT90600.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX4244]
Length = 459
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 130/252 (51%), Gaps = 50/252 (19%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDT--GTLIALDKSKPRVTKL 126
+Q+ S+L + ++P +VLD CAAPG K THIA + G + +LD ++ +
Sbjct: 242 IQDESSMLVAPAMQIEPHHRVLDACAAPGGKTTHIATFLEAEAGGRVTSLDIHAHKIKLI 301
Query: 127 EETIKKLQLSSI-QTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP 182
E ++L ++ + Q D+ ++ + E+FDRIL+DAPCSG G ++P
Sbjct: 302 NENAQRLHVADVVQAEKLDARQVAE---------EFPAETFDRILVDAPCSGLGLMRRKP 352
Query: 183 ---MFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSL 239
AN F NL K IQ ++L++V P LK+ GI+VY TC++
Sbjct: 353 DIKYHKTANDFQNLPK-------IQLEILESV-----------APTLKQWGIMVYSTCTI 394
Query: 240 SVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNT 299
+ EEN+ V+A L +HPE E ++ +A++++ QAV++ L P T
Sbjct: 395 TPEENQEVVAAFLAKHPEFEKIEI--------VANENV----QAVVKEQELVLYPHQYMT 442
Query: 300 DTIGFFICKLRK 311
D GFFIC +RK
Sbjct: 443 D--GFFICCMRK 452
>gi|256960468|ref|ZP_05564639.1| fmu [Enterococcus faecalis Merz96]
gi|293385126|ref|ZP_06630952.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis R712]
gi|293389099|ref|ZP_06633571.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis S613]
gi|312906690|ref|ZP_07765690.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis DAPTO 512]
gi|312910848|ref|ZP_07769684.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis DAPTO 516]
gi|256950964|gb|EEU67596.1| fmu [Enterococcus faecalis Merz96]
gi|291077603|gb|EFE14967.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis R712]
gi|291081567|gb|EFE18530.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis S613]
gi|310627338|gb|EFQ10621.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis DAPTO 512]
gi|311288871|gb|EFQ67427.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis DAPTO 516]
Length = 459
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 130/252 (51%), Gaps = 50/252 (19%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDT--GTLIALDKSKPRVTKL 126
+Q+ S+L + ++P +VLD CAAPG K THIA + G + +LD ++ +
Sbjct: 242 IQDESSMLVAPAMQIEPHHRVLDACAAPGGKTTHIATFLEAEAGGRVTSLDIHAHKIKLI 301
Query: 127 EETIKKLQLSSI-QTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP 182
E ++L ++ + Q D+ ++ + E+FDRIL+DAPCSG G ++P
Sbjct: 302 NENAQRLHVADVVQAEKLDARQVAE---------EFPAETFDRILVDAPCSGLGLMRRKP 352
Query: 183 ---MFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSL 239
AN F NL K IQ ++L++V P LK+ GI+VY TC++
Sbjct: 353 DIKYHKTANDFQNLPK-------IQLEILESV-----------APTLKQWGIMVYSTCTI 394
Query: 240 SVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNT 299
+ EEN+ V+A L +HPE E ++ +A++++ QAV++ L P T
Sbjct: 395 TPEENQEVVAAFLAKHPEFEKIEI--------VANENV----QAVVKEQELVLYPHQYMT 442
Query: 300 DTIGFFICKLRK 311
D GFFIC +RK
Sbjct: 443 D--GFFICCMRK 452
>gi|302915517|ref|XP_003051569.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Nectria haematococca mpVI
77-13-4]
gi|256732508|gb|EEU45856.1| hypothetical protein NECHADRAFT_38896 [Nectria haematococca mpVI
77-13-4]
Length = 673
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 133/293 (45%), Gaps = 55/293 (18%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +S++ L P LAGHY L+ Q +
Sbjct: 327 LINRGVTLEPVGKWSKVGLQVFESNV-PLGATPEYLAGHYILQAASSFLPCMALEPQENE 385
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM AAPG K T++A +M +TG ++A D +K R L I +L TR
Sbjct: 386 RVLDMAAAPGGKTTYMAAMMKNTGVIVANDPNKARAKGLIGNIHRL-----------GTR 434
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY---ANIQ 204
S D FDR+LLDAPCSG G + + +K + + +IQ
Sbjct: 435 NVVVSNYDAREFPKPMGGFDRVLLDAPCSGTG----VIAKDPSVKTNKTERDFMQLPHIQ 490
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL 264
K+L+ A V+ G G +VY TCS++VEENE V+ + L R P V LV++
Sbjct: 491 KQLVLAAIDSVNHASKTG-------GYIVYSTCSVTVEENEQVVQYALSRRPNVRLVESG 543
Query: 265 PQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
G +G + ++F P + T R N D GFF+ K K
Sbjct: 544 LPFGKEGFT--------SYMGKKFDPSMRHTRRYYPHTYNVD--GFFVAKFHK 586
>gi|126656069|ref|ZP_01727453.1| Fmu, rRNA SAM-dependent methyltransferase [Cyanothece sp. CCY0110]
gi|126622349|gb|EAZ93055.1| Fmu, rRNA SAM-dependent methyltransferase [Cyanothece sp. CCY0110]
Length = 452
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/271 (30%), Positives = 129/271 (47%), Gaps = 65/271 (23%)
Query: 62 LDSSMGILQNLPSILAGHY-------------LDVQPGQKVLDMCAAPGNKLTHIALLMN 108
L +G +Q LP GH+ LD QPG+ ++D CAAPG K THIA LM
Sbjct: 225 LQGKIGTIQTLPGFHEGHWTIQDSSAQLVSYLLDPQPGETIIDACAAPGGKTTHIAELMG 284
Query: 109 DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDR 168
D GT+IA D++ R+ K+++ ++LQL+SIQT + DS + ID DR
Sbjct: 285 DQGTVIACDRTPSRLKKVQQNAQRLQLNSIQTILGDSRHF--TQFID---------QGDR 333
Query: 169 ILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKK 228
+L+D PCSG G + + ++I+ + +Q+++L ++V K
Sbjct: 334 VLVDVPCSGLGTLHRHPDIR-WRQTPEQIQELSRLQQEILTQAAQWV-----------KP 381
Query: 229 DGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRF 288
G LVY TC+L+ EN+ +I L H +H +E +V F
Sbjct: 382 QGTLVYATCTLNPTENQQIIETFLTHH-----------------SHWTIEPP--SVDWLF 422
Query: 289 GP--------PLIPTDRNTDTIGFFICKLRK 311
P ++P + +TD GFF+ KL+K
Sbjct: 423 YPFVTSSKWIQILPHEHHTD--GFFMVKLKK 451
>gi|227517271|ref|ZP_03947320.1| RNA methyltransferase [Enterococcus faecalis TX0104]
gi|229548022|ref|ZP_04436747.1| RNA methyltransferase [Enterococcus faecalis ATCC 29200]
gi|255970686|ref|ZP_05421272.1| sun protein [Enterococcus faecalis T1]
gi|255974266|ref|ZP_05424852.1| sun protein [Enterococcus faecalis T2]
gi|256618123|ref|ZP_05474969.1| fmu family protein [Enterococcus faecalis ATCC 4200]
gi|256761053|ref|ZP_05501633.1| sun protein [Enterococcus faecalis T3]
gi|256854793|ref|ZP_05560157.1| sun protein [Enterococcus faecalis T8]
gi|256962961|ref|ZP_05567132.1| fmu [Enterococcus faecalis HIP11704]
gi|257083204|ref|ZP_05577565.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
gi|257088233|ref|ZP_05582594.1| conserved hypothetical protein [Enterococcus faecalis D6]
gi|257091364|ref|ZP_05585725.1| SUN protein [Enterococcus faecalis CH188]
gi|307273621|ref|ZP_07554849.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0855]
gi|307284853|ref|ZP_07565009.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0860]
gi|307288887|ref|ZP_07568860.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0109]
gi|312902128|ref|ZP_07761388.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0470]
gi|312905428|ref|ZP_07764542.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0635]
gi|312953217|ref|ZP_07772063.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0102]
gi|384514350|ref|YP_005709443.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis OG1RF]
gi|384516917|ref|YP_005704222.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis 62]
gi|422687001|ref|ZP_16745191.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX4000]
gi|422689950|ref|ZP_16748040.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0630]
gi|422692427|ref|ZP_16750448.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0031]
gi|422700442|ref|ZP_16758289.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX1342]
gi|422704093|ref|ZP_16761908.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX1302]
gi|422720858|ref|ZP_16777465.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0017]
gi|422723543|ref|ZP_16780078.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX2137]
gi|422725675|ref|ZP_16782133.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0312]
gi|422728590|ref|ZP_16784998.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0012]
gi|422732807|ref|ZP_16789136.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0645]
gi|422736050|ref|ZP_16792315.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX1341]
gi|424674077|ref|ZP_18111003.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis 599]
gi|424677375|ref|ZP_18114227.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV103]
gi|424681011|ref|ZP_18117807.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV116]
gi|424685260|ref|ZP_18121960.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV129]
gi|424688620|ref|ZP_18125225.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV25]
gi|424690594|ref|ZP_18127126.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV31]
gi|424694330|ref|ZP_18130733.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV37]
gi|424697942|ref|ZP_18134254.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV41]
gi|424701496|ref|ZP_18137668.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV62]
gi|424704552|ref|ZP_18140647.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV63]
gi|424711680|ref|ZP_18143892.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV65]
gi|424716459|ref|ZP_18145770.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV68]
gi|424721975|ref|ZP_18151042.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV72]
gi|424724707|ref|ZP_18153645.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV73]
gi|424727585|ref|ZP_18156214.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV81]
gi|424744474|ref|ZP_18172768.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV85]
gi|424753885|ref|ZP_18181814.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV93]
gi|424759066|ref|ZP_18186739.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis R508]
gi|430360176|ref|ZP_19426153.1| ribosomal RNA small subunit methyltransferase [Enterococcus
faecalis OG1X]
gi|430366206|ref|ZP_19427387.1| ribosomal RNA small subunit methyltransferase [Enterococcus
faecalis M7]
gi|227075278|gb|EEI13241.1| RNA methyltransferase [Enterococcus faecalis TX0104]
gi|229306898|gb|EEN72894.1| RNA methyltransferase [Enterococcus faecalis ATCC 29200]
gi|255961704|gb|EET94180.1| sun protein [Enterococcus faecalis T1]
gi|255967138|gb|EET97760.1| sun protein [Enterococcus faecalis T2]
gi|256597650|gb|EEU16826.1| fmu family protein [Enterococcus faecalis ATCC 4200]
gi|256682304|gb|EEU21999.1| sun protein [Enterococcus faecalis T3]
gi|256710353|gb|EEU25397.1| sun protein [Enterococcus faecalis T8]
gi|256953457|gb|EEU70089.1| fmu [Enterococcus faecalis HIP11704]
gi|256991234|gb|EEU78536.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
gi|256996263|gb|EEU83565.1| conserved hypothetical protein [Enterococcus faecalis D6]
gi|257000176|gb|EEU86696.1| SUN protein [Enterococcus faecalis CH188]
gi|306500159|gb|EFM69503.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0109]
gi|306503112|gb|EFM72369.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0860]
gi|306509634|gb|EFM78676.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0855]
gi|310628834|gb|EFQ12117.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0102]
gi|310631157|gb|EFQ14440.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0635]
gi|311290792|gb|EFQ69348.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0470]
gi|315026431|gb|EFT38363.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX2137]
gi|315028355|gb|EFT40287.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX4000]
gi|315031807|gb|EFT43739.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0017]
gi|315150899|gb|EFT94915.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0012]
gi|315152786|gb|EFT96802.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0031]
gi|315159379|gb|EFU03396.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0312]
gi|315161202|gb|EFU05219.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0645]
gi|315164414|gb|EFU08431.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX1302]
gi|315167222|gb|EFU11239.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX1341]
gi|315171200|gb|EFU15217.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX1342]
gi|315577118|gb|EFU89309.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0630]
gi|323479050|gb|ADX78489.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis 62]
gi|327536239|gb|AEA95073.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis OG1RF]
gi|402352021|gb|EJU86886.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis 599]
gi|402352398|gb|EJU87249.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV116]
gi|402354668|gb|EJU89471.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV103]
gi|402359241|gb|EJU93883.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV129]
gi|402360079|gb|EJU94688.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV25]
gi|402363792|gb|EJU98250.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV31]
gi|402370986|gb|EJV05165.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV37]
gi|402371527|gb|EJV05684.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV62]
gi|402374178|gb|EJV08214.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV41]
gi|402381574|gb|EJV15277.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV63]
gi|402383112|gb|EJV16729.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV65]
gi|402387976|gb|EJV21428.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV68]
gi|402389889|gb|EJV23264.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV72]
gi|402394127|gb|EJV27323.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV73]
gi|402396200|gb|EJV29271.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV81]
gi|402398874|gb|EJV31787.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV85]
gi|402403411|gb|EJV36085.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV93]
gi|402405242|gb|EJV37840.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis R508]
gi|429513088|gb|ELA02681.1| ribosomal RNA small subunit methyltransferase [Enterococcus
faecalis OG1X]
gi|429517220|gb|ELA06687.1| ribosomal RNA small subunit methyltransferase [Enterococcus
faecalis M7]
Length = 459
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 130/252 (51%), Gaps = 50/252 (19%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDT--GTLIALDKSKPRVTKL 126
+Q+ S+L + ++P +VLD CAAPG K THIA + G + +LD ++ +
Sbjct: 242 IQDESSMLVAPAMQIEPHHRVLDACAAPGGKTTHIATFLEAEAGGRVTSLDIHAHKIKLI 301
Query: 127 EETIKKLQLSSI-QTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP 182
E ++L ++ + Q D+ ++ + E+FDRIL+DAPCSG G ++P
Sbjct: 302 NENAQRLHVADVVQAEKLDARQVAE---------EFPAETFDRILVDAPCSGLGLMRRKP 352
Query: 183 ---MFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSL 239
AN F NL K IQ ++L++V P LK+ GI+VY TC++
Sbjct: 353 DIKYHKTANDFQNLPK-------IQLEILESV-----------APTLKQWGIMVYSTCTI 394
Query: 240 SVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNT 299
+ EEN+ V+A L +HPE E ++ +A++++ QAV++ L P T
Sbjct: 395 TPEENQEVVAAFLAKHPEFEKIEI--------VANENV----QAVVKEQELVLYPHQYMT 442
Query: 300 DTIGFFICKLRK 311
D GFFIC +RK
Sbjct: 443 D--GFFICCMRK 452
>gi|422698512|ref|ZP_16756404.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX1346]
gi|315172961|gb|EFU16978.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX1346]
Length = 459
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 130/252 (51%), Gaps = 50/252 (19%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDT--GTLIALDKSKPRVTKL 126
+Q+ S+L + ++P +VLD CAAPG K THIA + G + +LD ++ +
Sbjct: 242 IQDESSMLVAPAMQIEPHHRVLDACAAPGGKTTHIATFLEAEAGGRVTSLDIHAHKIKLI 301
Query: 127 EETIKKLQLSSI-QTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP 182
E ++L ++ + Q D+ ++ + E+FDRIL+DAPCSG G ++P
Sbjct: 302 NENAQRLHVADVVQAEKLDARQVAE---------EFPAETFDRILVDAPCSGLGLMRRKP 352
Query: 183 ---MFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSL 239
AN F NL K IQ ++L++V P LK+ GI+VY TC++
Sbjct: 353 DIKYHKTANDFQNLPK-------IQLEILESV-----------APTLKQWGIMVYSTCTI 394
Query: 240 SVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNT 299
+ EEN+ V+A L +HPE E ++ +A++++ QAV++ L P T
Sbjct: 395 TPEENQEVVAAFLAKHPEFEKIEI--------VANENV----QAVVKEQELVLYPHQYMT 442
Query: 300 DTIGFFICKLRK 311
D GFFIC +RK
Sbjct: 443 D--GFFICCMRK 452
>gi|310642738|ref|YP_003947496.1| ribosomal RNA small subunit methyltransferase b [Paenibacillus
polymyxa SC2]
gi|386041819|ref|YP_005960773.1| sun protein [Paenibacillus polymyxa M1]
gi|309247688|gb|ADO57255.1| Ribosomal RNA small subunit methyltransferase B [Paenibacillus
polymyxa SC2]
gi|343097857|emb|CCC86066.1| sun protein [Paenibacillus polymyxa M1]
Length = 471
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/260 (33%), Positives = 131/260 (50%), Gaps = 42/260 (16%)
Query: 59 NVALDS--SMGIL--QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLI 114
N+AL S + G+L Q+ S+L + +PG VLD CAAPG K H+A LM D G ++
Sbjct: 245 NMALTSWYTDGLLSVQDESSMLVAEAVAPEPGMTVLDCCAAPGGKTAHMAELMKDRGRIV 304
Query: 115 ALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAP 174
A D + + E +L L +++T D+ +D++ + SFDRILLDAP
Sbjct: 305 ANDLHAHKHQLIREQASRLGLDAVETVTGDA--------LDLKE-RYAPASFDRILLDAP 355
Query: 175 CSGFG---QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGI 231
CSGFG ++P + + + ++ +Q +LL +V LLK GI
Sbjct: 356 CSGFGVIRRKPDLRWSKTA----EDVRDITQLQHELLDSV-----------AGLLKPGGI 400
Query: 232 LVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPP 291
LVY TC++ +ENE +A L HPE EL K + D+ E + Q+
Sbjct: 401 LVYSTCTIEPDENEGQLARFLSEHPEYELA--------KDHSFPDVNHEMDGI-QKGSVQ 451
Query: 292 LIPTDRNTDTIGFFICKLRK 311
L+P ++D GF+I +LR+
Sbjct: 452 LLPQHFHSD--GFYIARLRR 469
>gi|425440910|ref|ZP_18821202.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9717]
gi|389718555|emb|CCH97514.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9717]
Length = 450
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 103/327 (31%), Positives = 142/327 (43%), Gaps = 65/327 (19%)
Query: 11 LWLDRAGFVSVLRLPA--RQRPSLSIYCYALDILFRGVAVEIT------NVLSQVPNVAL 62
LWLDR +L + P L I L + E+ N L L
Sbjct: 159 LWLDRFSVTETEQLCQWFNRSPDLDIRINPLKTSLEALENELESANITFNYLKLPLACRL 218
Query: 63 DSSMGILQNLPSILAGHY-------------LDVQPGQKVLDMCAAPGNKLTHIALLMND 109
S +G ++ L AG+Y LD QPG+ ++D CAAPG K THIA LM D
Sbjct: 219 TSGLGNIERLEGFRAGNYTLQDISAQLVTYLLDPQPGETIIDACAAPGGKTTHIAELMGD 278
Query: 110 TGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESF-DR 168
G ++A D++ R+ +LE IK+L L +I+ H+ DS R + Q DR
Sbjct: 279 RGRILACDQTASRLRQLEANIKRLDLKAIEIHLGDS------------RDRPQWHGIADR 326
Query: 169 ILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPL 225
+L+DAPCSG G +RP + NL A Q +LL + +V
Sbjct: 327 VLIDAPCSGLGTLHKRPDIRWRQTPENL----PVLAKRQGELLASAATWV---------- 372
Query: 226 LKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVM 285
K GILVY TC+L ENE VI L HP+ ++ P + E A+
Sbjct: 373 -KPKGILVYATCTLDPLENERVIEQFLAAHPDWKMAT--PD---SNSCFSEYYTETGAI- 425
Query: 286 QRFGPPLIPTDRNTDTIGFFICKLRKK 312
++P N D GFF+ KL K+
Sbjct: 426 -----EVLPHRHNQD--GFFMAKLVKE 445
>gi|257080479|ref|ZP_05574840.1| ribosomal RNA small subunit methyltransferase [Enterococcus
faecalis E1Sol]
gi|256988509|gb|EEU75811.1| ribosomal RNA small subunit methyltransferase [Enterococcus
faecalis E1Sol]
Length = 459
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 130/252 (51%), Gaps = 50/252 (19%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDT--GTLIALDKSKPRVTKL 126
+Q+ S+L + ++P +VLD CAAPG K THIA + G + +LD ++ +
Sbjct: 242 IQDESSMLVAPAMQIEPHHRVLDACAAPGGKTTHIATFLEAEAGGRVTSLDIHAHKIKLI 301
Query: 127 EETIKKLQLSSI-QTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP 182
E ++L ++ + Q D+ ++ + E+FDRIL+DAPCSG G ++P
Sbjct: 302 NENAQRLHVADVVQAEKLDARQVAE---------EFPAETFDRILVDAPCSGLGLMRRKP 352
Query: 183 ---MFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSL 239
AN F NL K IQ ++L++V P LK+ GI+VY TC++
Sbjct: 353 DIKYHKTANDFQNLPK-------IQLEILESV-----------APTLKQWGIMVYSTCTI 394
Query: 240 SVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNT 299
+ EEN+ V+A L +HPE E ++ +A++++ QAV++ L P T
Sbjct: 395 TPEENQEVVAAFLAKHPEFEKIEI--------VANENV----QAVVKEQELVLYPHQYMT 442
Query: 300 DTIGFFICKLRK 311
D GFFIC +RK
Sbjct: 443 D--GFFICCMRK 452
>gi|302652446|ref|XP_003018073.1| hypothetical protein TRV_07909 [Trichophyton verrucosum HKI 0517]
gi|291181678|gb|EFE37428.1| hypothetical protein TRV_07909 [Trichophyton verrucosum HKI 0517]
Length = 690
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 97/303 (32%), Positives = 140/303 (46%), Gaps = 62/303 (20%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +S + L P LAGHY L QP +
Sbjct: 329 LINRGVVLEPVGKWSKVGLQVFESPV-PLGATPEYLAGHYILQAASSFLPVMALAPQPHE 387
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
++LDM AAPG K T+ + LM +TG+++A D SK R L I +L + D+
Sbjct: 388 RILDMAAAPGGKTTYASALMRNTGSILANDASKTRAKGLIGNIHRLGCKNTIVSNLDA-- 445
Query: 148 INTSSQIDIERMKLQKE--SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYA---- 201
R K FDR+LLDAPCSG G ++ D K+K+
Sbjct: 446 ----------RTAFPKAIGGFDRVLLDAPCSGTG----------VISKDPKVKTSKTERD 485
Query: 202 -----NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHP 256
++QK+LL A + G G +VY TCS++VEENE V+ + L + P
Sbjct: 486 FLALPHMQKQLLLAAIDSTNHASKTG-------GYIVYSTCSVTVEENEGVVQYALRKRP 538
Query: 257 EVELVQT-LPQLGMKGL-AHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKKYG 314
V++V T L G G + + + +D+ + R P N D GFF+CKL KK G
Sbjct: 539 NVKIVDTGLGNFGTPGFKTYMNKKFDDKMPLTRR---YYPHRENVD--GFFVCKL-KKTG 592
Query: 315 EAP 317
+P
Sbjct: 593 PSP 595
>gi|29377578|ref|NP_816732.1| Sun protein [Enterococcus faecalis V583]
gi|227554542|ref|ZP_03984589.1| RNA methyltransferase [Enterococcus faecalis HH22]
gi|257417966|ref|ZP_05594960.1| SUN protein [Enterococcus faecalis T11]
gi|422713873|ref|ZP_16770621.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0309A]
gi|422718502|ref|ZP_16775155.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0309B]
gi|29345045|gb|AAO82802.1| Sun protein [Enterococcus faecalis V583]
gi|227176340|gb|EEI57312.1| RNA methyltransferase [Enterococcus faecalis HH22]
gi|257159794|gb|EEU89754.1| SUN protein [Enterococcus faecalis T11]
gi|315573270|gb|EFU85461.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0309B]
gi|315581156|gb|EFU93347.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0309A]
Length = 459
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 130/252 (51%), Gaps = 50/252 (19%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDT--GTLIALDKSKPRVTKL 126
+Q+ S+L + ++P +VLD CAAPG K THIA + G + +LD ++ +
Sbjct: 242 IQDESSMLVAPSMQIEPHHRVLDACAAPGGKTTHIATFLEAEAGGRVTSLDIHAHKIKLI 301
Query: 127 EETIKKLQLSSI-QTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP 182
E ++L ++ + Q D+ ++ + E+FDRIL+DAPCSG G ++P
Sbjct: 302 NENAQRLHVADVVQAEKLDARQVAE---------EFPAETFDRILVDAPCSGLGLMRRKP 352
Query: 183 ---MFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSL 239
AN F NL K IQ ++L++V P LK+ GI+VY TC++
Sbjct: 353 DIKYHKTANDFQNLPK-------IQLEILESV-----------APTLKQWGIMVYSTCTI 394
Query: 240 SVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNT 299
+ EEN+ V+A L +HPE E ++ +A++++ QAV++ L P T
Sbjct: 395 TPEENQEVVAAFLAKHPEFEKIEI--------VANENV----QAVVKEQELVLYPHQYMT 442
Query: 300 DTIGFFICKLRK 311
D GFFIC +RK
Sbjct: 443 D--GFFICCMRK 452
>gi|357059538|ref|ZP_09120380.1| ribosomal RNA small subunit methyltransferase B [Selenomonas
infelix ATCC 43532]
gi|355371615|gb|EHG18959.1| ribosomal RNA small subunit methyltransferase B [Selenomonas
infelix ATCC 43532]
Length = 448
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 120/253 (47%), Gaps = 43/253 (16%)
Query: 62 LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKP 121
L + +Q+ S+L H L +PG V+D CAAPG K THIA M + G ++A D +
Sbjct: 235 LREGLAQVQDESSMLVAHILGAEPGMTVIDACAAPGGKTTHIAQRMENRGRILAFDIYEE 294
Query: 122 RVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG-- 179
++ ++E K+L +S I+T + D+ I + E DR+L+DAPCSG G
Sbjct: 295 KMRRIERNAKRLGISMIETQMRDAREIGAA----------YAEQADRVLVDAPCSGLGVL 344
Query: 180 -QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS 238
++P S + K+ ++Q+ +L + R V K GILVY TC+
Sbjct: 345 RRKPDARWKKSV----RDAKTLPSLQRDILASAARAV-----------KHGGILVYSTCT 389
Query: 239 LSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRN 298
+ EN AV+ L H + L +T L M+ K E Q + + GP
Sbjct: 390 MEECENAAVVRAFLETHADFALEETGAFLPMQ----KTTERMVQIMPETDGPD------- 438
Query: 299 TDTIGFFICKLRK 311
GFFI ++R+
Sbjct: 439 ----GFFIARMRR 447
>gi|340522301|gb|EGR52534.1| predicted protein [Trichoderma reesei QM6a]
Length = 688
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 139/291 (47%), Gaps = 51/291 (17%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V ++++ L P LAGHY L QP +
Sbjct: 323 LINRGVTLEPVGKWSKVGLQIFETNV-PLGATPEYLAGHYIIQAAASFLPVMALSPQPNE 381
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM +APG K T+ + +MN+TG + A D +K R L + +L + ++ YD
Sbjct: 382 RVLDMASAPGGKTTYCSAMMNNTGVVFANDPNKERAKGLIGNVARLGVRNVIVCSYDGR- 440
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANIQKK 206
+ R+ FDR+LLDAPCSG G + + + N D+K S ++QK+
Sbjct: 441 -------EFPRV---MGGFDRVLLDAPCSGTGV--ISKDPSVKTNKDEKDFISLPHMQKQ 488
Query: 207 LLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQ 266
LL + V+ G G LVY TCS++ EENEAV+ + L R P V+LV T
Sbjct: 489 LLLSAIDSVNHASETG-------GFLVYSTCSVTTEENEAVVNYALSRRPNVKLVDTGIP 541
Query: 267 LGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
G +G + ++F P L T R N D GF++ K +K
Sbjct: 542 FGKEGFT--------SFMGKKFHPSLKLTRRFYPHAHNID--GFYVAKFQK 582
>gi|403411733|emb|CCL98433.1| predicted protein [Fibroporia radiculosa]
Length = 655
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/291 (30%), Positives = 134/291 (46%), Gaps = 47/291 (16%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV +E + V +SS+ I P LAG Y L Q
Sbjct: 320 AQALINRGVNLEPIGKWTNVGLQVFESSVPIGAT-PEYLAGQYMLQAASSFLPVIALAPQ 378
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
P ++VLDM +APG K TH+A LM +TG + A D K R L + +L ++ YD
Sbjct: 379 PNERVLDMASAPGGKTTHMAALMENTGVVFANDAKKARTKSLTANVHRLGCKNVVVCSYD 438
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYA--- 201
FDR+LLDAPCSG G + ++ + +K + +A
Sbjct: 439 GREFPKVMG-----------GFDRVLLDAPCSGTG----VISKDASVKTNKSERDFALLS 483
Query: 202 NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
++QK+L+ V+ P K G LVY TCS++V+ENEAV+ + L + P V+LV
Sbjct: 484 HLQKQLILCAIDSVT-------PDSKTGGYLVYSTCSVTVDENEAVVDYALRKRPNVKLV 536
Query: 262 QTLPQLGMKGLA--HKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLR 310
T + G G + E ++ +RF P + D GF++ K +
Sbjct: 537 DTGLEFGRPGYTKYRGKVFNEKVSLTRRFYPHVHNMD------GFYVAKFK 581
>gi|229547453|ref|ZP_04436178.1| RNA methyltransferase [Enterococcus faecalis TX1322]
gi|229307485|gb|EEN73472.1| RNA methyltransferase [Enterococcus faecalis TX1322]
Length = 459
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 130/252 (51%), Gaps = 50/252 (19%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDT--GTLIALDKSKPRVTKL 126
+Q+ S+L + ++P +VLD CAAPG K THIA + G + +LD ++ +
Sbjct: 242 IQDESSMLVAPAMQIEPHHRVLDACAAPGGKTTHIATFLEAEAGGRVTSLDIHAHKIKLI 301
Query: 127 EETIKKLQLSSI-QTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP 182
E ++L ++ + Q D+ ++ + E+FDRIL+DAPCSG G ++P
Sbjct: 302 NENAQRLNVADVVQAEKLDARQVAE---------EFPAETFDRILVDAPCSGLGLMRRKP 352
Query: 183 ---MFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSL 239
AN F NL K IQ ++L++V P LK+ GI+VY TC++
Sbjct: 353 DIKYHKTANDFQNLPK-------IQLEILESV-----------APTLKQWGIMVYSTCTI 394
Query: 240 SVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNT 299
+ EEN+ V+A L +HPE E ++ +A++++ QAV++ L P T
Sbjct: 395 TPEENQEVVAAFLAKHPEFEKIEI--------VANENV----QAVVKEQELVLYPHQYMT 442
Query: 300 DTIGFFICKLRK 311
D GFFIC +RK
Sbjct: 443 D--GFFICCMRK 452
>gi|397651760|ref|YP_006492341.1| nol1-nop2-sun family nucleolar protein II [Pyrococcus furiosus
COM1]
gi|393189351|gb|AFN04049.1| nol1-nop2-sun family nucleolar protein II [Pyrococcus furiosus
COM1]
Length = 433
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 122/244 (50%), Gaps = 38/244 (15%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
++Q+L S H L +PG++VLD+ AAPG+K H A LM + G ++A+D S R+ +++
Sbjct: 227 VIQDLASAYVAHVLSPEPGERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYERLVRMK 286
Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNA 187
E +KKL + +++ D S ID KE FD+I+LDAPCS G F
Sbjct: 287 ERMKKLGVKNVKLVYADG-----QSYID-------KEKFDKIILDAPCSSSGTYRQFPEV 334
Query: 188 NSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
N ++KIK ++Q+ +L +R LK+ G + Y TCS+ ++ENE
Sbjct: 335 KWRFN-EEKIKRIISVQRNMLINAFR-----------NLKEGGEMTYSTCSVRIDENEEN 382
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
+ + L R E+V G KG LE D+ T R+ D FFI
Sbjct: 383 VMFGLERG--FEIVDYPFSWGDKGF----LEIGDKTFR-------TWTHRH-DCNSFFIA 428
Query: 308 KLRK 311
KLRK
Sbjct: 429 KLRK 432
>gi|345021918|ref|ZP_08785531.1| hypothetical protein OTW25_11359 [Ornithinibacillus scapharcae
TW25]
Length = 448
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/277 (30%), Positives = 129/277 (46%), Gaps = 49/277 (17%)
Query: 44 RGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHI 103
+G+ + N+L + + + +Q+ S+L G LD G VLD C+APG K THI
Sbjct: 213 QGIIINNGNILK---SSLFEDGLVTIQDQSSMLVGELLDANAGDVVLDACSAPGGKATHI 269
Query: 104 ALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK 163
A M + G + A D K ++ + E L LS I+ D+ + Q
Sbjct: 270 AEKMGNKGVIRAHDLHKKKIKLINEKANALDLSIIEAEAADARNLGEH---------YQN 320
Query: 164 ESFDRILLDAPCSGFG---QRP-MFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFD 219
E+FDRIL+DAPCSG G +P + YN ++ I+ + IQK +L V
Sbjct: 321 ETFDRILVDAPCSGLGVMRGKPDIKYNKQ-----ERDIERLSEIQKDILTTV-------- 367
Query: 220 WQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVEL----VQTLPQLGMKGLAHK 275
PLLK +G L+Y TC++ ENEAV+ L H + ++ + LP
Sbjct: 368 ---APLLKIEGKLLYSTCTVDPIENEAVVKAFLAEHEDYQIDKQFFEELPN--------- 415
Query: 276 DLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKK 312
E ++ + +G L P TD GFF+ +L ++
Sbjct: 416 --ELKNSIGVSEYGLQLFPQSFETD--GFFLTRLIRR 448
>gi|425464664|ref|ZP_18843974.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9809]
gi|389833279|emb|CCI22350.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9809]
Length = 450
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/266 (31%), Positives = 129/266 (48%), Gaps = 35/266 (13%)
Query: 5 QSQCYCLWLDRAGFVSVLRLPAR-QRPSLSIYCYALDILFRGV----AVEITNVLSQVPN 59
+++ C W +R+ + + P + R +L + +I F + A +T+ L +
Sbjct: 168 ETEQLCQWFNRSPDLDIRINPLKTSREALENELESANITFHHLKLPLACRLTSGLGNIER 227
Query: 60 V-ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDK 118
+ + LQ++ + L + LD QPG+ ++D CAAPG K THIA LM D G ++A D+
Sbjct: 228 LEGFRAGNYTLQDISAQLVTYLLDPQPGETIIDACAAPGGKTTHIAELMGDRGRILACDQ 287
Query: 119 SKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGF 178
+ R+ +LE IK+L L +I+ H+ DS I DR+L+DAPCSG
Sbjct: 288 TASRLRQLEANIKRLDLKAIEIHLGDSRDRPQWCGI-----------ADRVLIDAPCSGL 336
Query: 179 G---QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC 235
G +RP + NL A Q +LL + +V K GILVY
Sbjct: 337 GTLHKRPDIRWRQTPENL----PVLAKRQGELLASAATWV-----------KPKGILVYA 381
Query: 236 TCSLSVEENEAVIAWILHRHPEVELV 261
TC+L ENE VI L HP+ ++
Sbjct: 382 TCTLDPLENERVIEQFLAAHPDWKMA 407
>gi|257420431|ref|ZP_05597421.1| SUN protein [Enterococcus faecalis X98]
gi|422708017|ref|ZP_16765551.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0043]
gi|257162255|gb|EEU92215.1| SUN protein [Enterococcus faecalis X98]
gi|315154707|gb|EFT98723.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0043]
Length = 459
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 126/252 (50%), Gaps = 50/252 (19%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDT--GTLIALDKSKPRVTKL 126
+Q+ S+L + ++P +VLD CAAPG K THIA + G + +LD ++ +
Sbjct: 242 IQDESSMLVAPAMQIEPHHRVLDACAAPGGKTTHIATFLEAEAGGRVTSLDIHAHKIKLI 301
Query: 127 EETIKKLQLSSI-QTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP 182
E ++L ++ + Q D+ ++ + E+FDRIL+DAPCSG G ++P
Sbjct: 302 NENAQRLHVADVVQAEKLDARQVAE---------EFPAETFDRILVDAPCSGLGLMRRKP 352
Query: 183 ---MFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSL 239
AN F NL K IQ ++L++V P LK+ GI+VY TC++
Sbjct: 353 DIKYHKTANDFQNLPK-------IQLEILESV-----------APTLKQWGIMVYSTCTI 394
Query: 240 SVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNT 299
+ EEN+ V+A L +HPE E ++ + + QAV++ L P T
Sbjct: 395 TPEENQEVVAAFLAKHPEFEKIEIVTNENV------------QAVVKEQELVLYPHQYMT 442
Query: 300 DTIGFFICKLRK 311
D GFFIC +RK
Sbjct: 443 D--GFFICCMRK 452
>gi|422294853|gb|EKU22153.1| ribosomal rna methyltransferase nop2 [Nannochloropsis gaditana
CCMP526]
Length = 753
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 99/297 (33%), Positives = 137/297 (46%), Gaps = 55/297 (18%)
Query: 38 ALDILFRGVAVE-ITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDV 83
A +L RGV++E + S+V +DS + + P LAGHY L
Sbjct: 301 AQALLKRGVSLEPLAGGWSKVALKIIDSQVPVGAT-PEYLAGHYILQSASSMTPVMALAP 359
Query: 84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVY 143
QP ++VLD+ AAPG K ++ A LM +TG L+A D R + +L + + Y
Sbjct: 360 QPHERVLDLSAAPGGKASYCAQLMKNTGLLVANDLKSERQKATIANLHRLGVRNAVVCSY 419
Query: 144 DSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG--QRPMFYNANSFLNLDKKIKSYA 201
D R+ + MK FDR LLDAPCSG G R L ++ +
Sbjct: 420 DGRRLPSV-------MK----GFDRALLDAPCSGLGIVARDQSVKVQRTL---ADVRKMS 465
Query: 202 NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
++Q++LL+A V G G+LVY TCS++VEENE V+ +IL P V +V
Sbjct: 466 HLQRELLRAAVDCVDAGSKTG-------GVLVYSTCSVAVEENELVVDYILRARPNVRVV 518
Query: 262 QT-LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
T L G G + RF P L T R N D GFF+CKL+K
Sbjct: 519 PTGLGDFGRPGFT--------RVAEHRFHPSLALTRRFYPHVHNMD--GFFVCKLQK 565
>gi|315924509|ref|ZP_07920730.1| RNA methyltransferase Sun [Pseudoramibacter alactolyticus ATCC
23263]
gi|315622213|gb|EFV02173.1| RNA methyltransferase Sun [Pseudoramibacter alactolyticus ATCC
23263]
Length = 440
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 107/193 (55%), Gaps = 29/193 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ ++L LD +PG+++LDMCAAPG K TH+A LM+D G +IA D R+ +E+
Sbjct: 246 IQDQGAMLIAELLDPRPGERILDMCAAPGGKTTHLAQLMSDAGEIIARDIYPSRLQLIED 305
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
K+L +S+I+T ++D I+ K ++ +FD+ILLDAPCSG+G ++P
Sbjct: 306 AAKRLGISNIKTELWDG----------IQPPK-EEAAFDKILLDAPCSGYGVIRRKPEI- 353
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ + ++ Q+ LL G+ LL+ DG LVY TC++ EEN
Sbjct: 354 ---RYRGTKEDRRAIRQTQRTLLN-----------NGLDLLRSDGKLVYATCTIDPEENN 399
Query: 246 AVIAWILHRHPEV 258
IA ++ +V
Sbjct: 400 RQIARVVRERSDV 412
>gi|330790279|ref|XP_003283225.1| hypothetical protein DICPUDRAFT_146818 [Dictyostelium purpureum]
gi|325086906|gb|EGC40289.1| hypothetical protein DICPUDRAFT_146818 [Dictyostelium purpureum]
Length = 672
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 97/299 (32%), Positives = 138/299 (46%), Gaps = 57/299 (19%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E SQV D+ + I P LAG Y L QP +
Sbjct: 303 LIARGVHLEPIK-WSQVGLTIYDTQVAIGA-TPEYLAGQYIQQSASSFLPVLALAPQPNE 360
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDMCA+PG K T+IA +M +TGTL+A D +K R+ L I +L + +
Sbjct: 361 RVLDMCASPGGKTTYIAAMMKNTGTLVANDVNKERIKSLVANIHRLGVKNC--------- 411
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYANIQ 204
S +D FDR+L+DAPC G G + P + S ++ + + + Q
Sbjct: 412 --VVSNMDGREYPSVLAGFDRVLVDAPCVGLGVISKDPQIKISKS----EQDVITCTHTQ 465
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL 264
K+LL V G GI+VY TCSL+VEENEAV+ + L R+ +V +V T
Sbjct: 466 KELLLRAIDAVDANSATG-------GIIVYSTCSLTVEENEAVVDYAL-RNRDVIIVDTT 517
Query: 265 PQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRKKYGEAP 317
+ G+ G RF P L T R N D GF++ KL+K+ P
Sbjct: 518 IEFGVDGFT--------SFRESRFHPSLALTKRYYPHTHNMD--GFYVAKLKKRSNTIP 566
>gi|352516237|ref|YP_004885554.1| putative rRNA methyltransferase [Tetragenococcus halophilus NBRC
12172]
gi|348600344|dbj|BAK93390.1| putative rRNA methyltransferase [Tetragenococcus halophilus NBRC
12172]
Length = 452
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 127/251 (50%), Gaps = 46/251 (18%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIA--LLMNDTGTLIALDKSKPRVTKL 126
+Q+ S+L L ++ +VLD CAAPG K THIA L + G + ALD K +V +
Sbjct: 238 IQDESSMLVAPALQIENKHQVLDACAAPGGKTTHIASFLAAKENGRVTALDIHKQKVRLI 297
Query: 127 EETIKKLQLSSIQTHVYDSTRINTSSQIDIERMK--LQKESFDRILLDAPCSGFG---QR 181
EE ++I+ HV D + + ++D ++ + SFDRIL+DAPCSG G ++
Sbjct: 298 EE-------NAIRMHVEDVVK---AKELDARKVNNTFAQSSFDRILVDAPCSGLGLMRRK 347
Query: 182 PMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSV 241
P ++ + ++S + IQ ++L++V P LK GILVY TC++
Sbjct: 348 PDI----KYVKKPEDLQSLSAIQLEILESVA-----------PSLKPSGILVYSTCTILP 392
Query: 242 EENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDT 301
EEN+ V+ L +HPE EL+Q ++ L A + M P TD
Sbjct: 393 EENQEVVKQFLQKHPEFELIQV--------TVNEKLNASLKEKMLTIFPHQYYTD----- 439
Query: 302 IGFFICKLRKK 312
GFFI LRKK
Sbjct: 440 -GFFISCLRKK 449
>gi|169333678|ref|ZP_02860871.1| hypothetical protein ANASTE_00062 [Anaerofustis stercorihominis DSM
17244]
gi|169259672|gb|EDS73638.1| ribosomal RNA small subunit methyltransferase B [Anaerofustis
stercorihominis DSM 17244]
Length = 450
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/249 (30%), Positives = 124/249 (49%), Gaps = 45/249 (18%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ ++ H LDV+ KVLDMCAAPG K H + LMN++G +++ D ++ +
Sbjct: 240 IQDCAGMVVAHSLDVKEDMKVLDMCAAPGGKSMHTSELMNNSGDIVSCDIYTKKLEIMNF 299
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP--M 183
+K+L +++I T D T N +FDRI+ D PCSG G ++P +
Sbjct: 300 RMKQLGINNIMTKKLDGTIFNECYM----------NTFDRIICDVPCSGLGVIRRKPEIL 349
Query: 184 FYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEE 243
Y +N +KI+ +Q+++L+ GI LKK G+L+Y TC+++ EE
Sbjct: 350 IYYSN------EKIEELKKVQRQILE-----------NGIRYLKKGGVLIYSTCTINKEE 392
Query: 244 NEAVIAWILHRHPEVELVQ-TLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTI 302
NE ++ IL H +++L + LP E + + G I D+N +
Sbjct: 393 NEDIVYSILKEHEDIKLNEINLP-----------FEFDYDKAKAKEGILNISGDKN-NID 440
Query: 303 GFFICKLRK 311
FFI KL K
Sbjct: 441 SFFIAKLTK 449
>gi|18977637|ref|NP_578994.1| nol1-nop2-sun family nucleolar protein II [Pyrococcus furiosus DSM
3638]
gi|18893359|gb|AAL81389.1| putative nucleolar protein II (nol1-nop2-sun family) [Pyrococcus
furiosus DSM 3638]
Length = 450
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 122/244 (50%), Gaps = 38/244 (15%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
++Q+L S H L +PG++VLD+ AAPG+K H A LM + G ++A+D S R+ +++
Sbjct: 244 VIQDLASAYVAHVLSPEPGERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYERLVRMK 303
Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNA 187
E +KKL + +++ D S ID KE FD+I+LDAPCS G F
Sbjct: 304 ERMKKLGVKNVKLVYADG-----QSYID-------KEKFDKIILDAPCSSSGTYRQFPEV 351
Query: 188 NSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
N ++KIK ++Q+ +L +R LK+ G + Y TCS+ ++ENE
Sbjct: 352 KWRFN-EEKIKRIISVQRNMLINAFR-----------NLKEGGEMTYSTCSVRIDENEEN 399
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
+ + L R E+V G KG LE D+ T R+ D FFI
Sbjct: 400 VMFGLERG--FEIVDYPFSWGDKGF----LEIGDKTFR-------TWTHRH-DCNSFFIA 445
Query: 308 KLRK 311
KLRK
Sbjct: 446 KLRK 449
>gi|405118456|gb|AFR93230.1| nucleolar protein [Cryptococcus neoformans var. grubii H99]
Length = 695
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 93/301 (30%), Positives = 147/301 (48%), Gaps = 55/301 (18%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +S + I P LAGHY L QP +
Sbjct: 358 LINRGVTLEPIGKWSKVGLQVFESPVPIGAT-PEYLAGHYMLQAASSFLPVIALAPQPNE 416
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM +APG K T+I+ L+ +TG + A D +K R L + ++ ++ YD+
Sbjct: 417 RVLDMASAPGGKTTYISALLQNTGIVFANDSNKARTKSLTANVHRMGCKNVVVCNYDAR- 475
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY---ANIQ 204
E K+ FDR+LLDAPCSG G + ++ + ++K + + A++Q
Sbjct: 476 ---------EFPKVMG-GFDRVLLDAPCSGTG----VISKDASVKVNKTERDFQLLAHLQ 521
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL 264
K+L+ V+ P G +VY TCS++V+ENE+V+ + L + P V+LV+T
Sbjct: 522 KQLILCAIDSVN-------PNSSTGGYVVYSTCSVTVDENESVVDYALRKRPNVKLVETG 574
Query: 265 PQLGMKGLAHKDLEAED----QAVMQRFGPPLIPTDRNTDTIGFFICKL----RKKYGEA 316
G+ G K E ++ ++ +RF P N D GFF+ K RKK +A
Sbjct: 575 LDFGVHGF--KSFEGKNFHSSVSLTRRF----YPHKHNMD--GFFVAKFKVEPRKKLTKA 626
Query: 317 P 317
P
Sbjct: 627 P 627
>gi|126340043|ref|XP_001369382.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2
[Monodelphis domestica]
Length = 727
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 98/296 (33%), Positives = 135/296 (45%), Gaps = 56/296 (18%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+ V DSS+ I P LAGHY L Q
Sbjct: 331 AQALINRGVNLDPLGKWSKTGLVVYDSSVPIGAT-PEYLAGHYILQGASSMLPVIALAPQ 389
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDMC APG K ++IA LM +TG ++A D + R+ + + +L +++
Sbjct: 390 EHERILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNT------ 443
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYA 201
S D FDR+LLDAPCSG G + P DK IK A
Sbjct: 444 -----IISHDDGRHFPKVVGGFDRVLLDAPCSGTGVISKDPSVKTNKD----DKDIKRCA 494
Query: 202 NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
+IQK+LL + V+ G G +VYCTCS++VEENE V+ + L + V LV
Sbjct: 495 HIQKELLLSAIDSVNAASKTG-------GYIVYCTCSITVEENEWVVEYALKKR-NVRLV 546
Query: 262 QTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
T G +G H +RF P L T R N D GFFI K +K
Sbjct: 547 PTGLDFGQEGFTH--------FRERRFHPTLRSTRRFYPHTHNMD--GFFIAKFKK 592
>gi|414076371|ref|YP_006995689.1| ribosomal RNA small subunit methyltransferase B [Anabaena sp. 90]
gi|413969787|gb|AFW93876.1| ribosomal RNA small subunit methyltransferase B [Anabaena sp. 90]
Length = 446
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 99/325 (30%), Positives = 139/325 (42%), Gaps = 65/325 (20%)
Query: 11 LWLDRAGFVSVLRLP--ARQRPSLSIYCYALDILFRGV--AVEITNVLSQ-VPNVA---- 61
+WL GF +L Q P++ + L V A E VL + +P++
Sbjct: 158 VWLKELGFEETEKLANWMNQTPTIDLRVNILRSSLEEVQSAFESAGVLVKPIPHLPQALR 217
Query: 62 LDSSMGILQNLPSI-------------LAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMN 108
L G +QNLP L GH LD PG V+D+CAAPG K THIA LM
Sbjct: 218 LIGHNGAIQNLPGFNEGWWTVQDSSAQLVGHLLDPLPGNVVIDVCAAPGGKTTHIAELMG 277
Query: 109 DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDR 168
D G + A D++ R+ KL+E +L L SI+ DS + +S DR
Sbjct: 278 DKGKIWACDQTASRLRKLKENAHRLNLQSIEICAGDSRNLPQFY-----------DSADR 326
Query: 169 ILLDAPCSGFGQRPMFYNANS-FLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLK 227
+L+DAPCSG G M +A++ + ++ + +QK+LL FV K
Sbjct: 327 VLVDAPCSGLGT--MHRHADARWRQTPDSVQKLSQLQKELLSHNAGFV-----------K 373
Query: 228 KDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQR 287
G+LVY TC+L ENE VI L +P H +E +
Sbjct: 374 AGGVLVYATCTLHPAENEQVITEFLAANP-----------------HWQIEPHSFDLFND 416
Query: 288 FGPPLIPT-DRNTDTIGFFICKLRK 311
P + D GFF+ +LRK
Sbjct: 417 TAPGWLKVWPHQQDMDGFFMVRLRK 441
>gi|406863282|gb|EKD16330.1| tRNA (cytosine-5-)-methyltransferase NCL1 [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 1016
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 92/289 (31%), Positives = 132/289 (45%), Gaps = 47/289 (16%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S++ +S++ L P LAGHY L Q +
Sbjct: 320 LINRGVVLEPVGKWSKIGLQIFESAV-PLGATPEYLAGHYILQAASSFLPVMALAPQENE 378
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM AAPG K THIA LM +TG + A D +K R L I +L + YD+
Sbjct: 379 RVLDMAAAPGGKTTHIAALMKNTGCIFANDSNKSRAKGLIGNIHRLGAKNTIVCNYDARE 438
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY---ANIQ 204
FDR+LLDAPCSG G + + +K K + ++Q
Sbjct: 439 FPKVIG-----------GFDRVLLDAPCSGTG----VIAKDPSVKTNKTEKDFLMLPHLQ 483
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL 264
K+LL A V G G +VY TCS++VEENE V+ + L R P V+LV+T
Sbjct: 484 KQLLLAAIDSVDHASKTG-------GYIVYSTCSVTVEENEGVVQYALSRRPNVKLVETG 536
Query: 265 PQLGMKGLAHKDLEAEDQA--VMQRFGPPLIPTDRNTDTIGFFICKLRK 311
G +G + D++ + +R+ P D GFF+ K +K
Sbjct: 537 LVFGKEGFTAYMGKTFDKSLKMTRRYYPHAYNVD------GFFVSKFKK 579
>gi|425460298|ref|ZP_18839779.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9808]
gi|389827038|emb|CCI22011.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9808]
Length = 446
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/266 (31%), Positives = 130/266 (48%), Gaps = 35/266 (13%)
Query: 5 QSQCYCLWLDRAGFVSVLRLPAR-QRPSLSIYCYALDILFRGV----AVEITNVLSQVPN 59
+++ C W +R+ + + P + R +L + +I F + A +T+ L +
Sbjct: 168 ETEQLCQWFNRSPDLDIRINPLKTSREALENDLESANITFHHLKLPLACRLTSGLGNIER 227
Query: 60 V-ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDK 118
+ + LQ++ + L + LD QPG+ ++D CAAPG K THIA LM D G ++A D+
Sbjct: 228 LEGFRAGNYTLQDISAQLVTYLLDPQPGETIIDACAAPGGKTTHIAELMGDRGRILACDQ 287
Query: 119 SKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGF 178
+ R+ +LE IK+L L +I+ H+ DS I DR+L+DAPCSG
Sbjct: 288 TPSRLRQLEANIKRLDLKAIEIHLGDSRDRPQWCGI-----------ADRVLIDAPCSGL 336
Query: 179 G---QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC 235
G +RP + NL A Q +LL + +V K GILVY
Sbjct: 337 GTLHKRPDIRWRQTPENL----PVLAKRQGELLASAATWV-----------KPKGILVYA 381
Query: 236 TCSLSVEENEAVIAWILHRHPEVELV 261
TC+L+ ENE VI L HP+ ++
Sbjct: 382 TCTLNPLENERVIEQFLAAHPDWKMA 407
>gi|284928897|ref|YP_003421419.1| ribosomal RNA small subunit methyltransferase RsmB [cyanobacterium
UCYN-A]
gi|284809356|gb|ADB95061.1| ribosomal RNA small subunit methyltransferase RsmB [cyanobacterium
UCYN-A]
Length = 453
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/271 (31%), Positives = 130/271 (47%), Gaps = 65/271 (23%)
Query: 62 LDSSMGILQNLPSILAGHY-------------LDVQPGQKVLDMCAAPGNKLTHIALLMN 108
L G ++NLP + G + LD + G+ V+D CAAPG K THIA LM
Sbjct: 221 LKGQTGDIKNLPGFIKGDWTVQDISAQLVSYLLDPKIGETVIDACAAPGGKTTHIAELMR 280
Query: 109 DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESF-D 167
D G ++A D+ R+TK+++ I++L+L SI+ DS R Q +F D
Sbjct: 281 DKGLILACDRISSRLTKIQQNIERLKLRSIKLVKGDS------------RYLQQFNNFAD 328
Query: 168 RILLDAPCSGFGQRPMFYNAN-SFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLL 226
R+L+DAPCSG G + N + + +KIK + IQ+++L ++V
Sbjct: 329 RVLVDAPCSGLG--TLHRNPDIRWRQTPEKIKQLSIIQQEILDKASKWV----------- 375
Query: 227 KKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL------PQLGMKGLAHKDLEAE 280
K +G+LVY TC+L+V ENE ++ L +PE + + L P + G
Sbjct: 376 KPNGVLVYSTCTLNVSENETIVCNFLKNNPEWNIEKPLFSKLFSPFITSSGWLQT----- 430
Query: 281 DQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
+P + N D GFF+ KLRK
Sbjct: 431 ------------LPHEHNMD--GFFMVKLRK 447
>gi|443315650|ref|ZP_21045130.1| ribosomal RNA small subunit methyltransferase RsmB [Leptolyngbya
sp. PCC 6406]
gi|442784744|gb|ELR94604.1| ribosomal RNA small subunit methyltransferase RsmB [Leptolyngbya
sp. PCC 6406]
Length = 454
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 103/204 (50%), Gaps = 23/204 (11%)
Query: 63 DSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPR 122
D+ +Q+ + + +D QP Q V+D CAAPG K H+A LM DTGT+ A D++ R
Sbjct: 241 DNGWWTVQDASAQWVSYLVDPQPDQVVIDACAAPGGKAAHLAALMEDTGTIWACDRTPSR 300
Query: 123 VTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRP 182
+ K+++T +L L SI T V DST + R + Q DR+++DAPCSG G
Sbjct: 301 LKKIQQTCDRLGLKSIHTLVGDSTTLT--------RFEGQG---DRVIVDAPCSGLGTLH 349
Query: 183 MFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVE 242
+A + + I+ +Q+ LL +V K G LVY TC+L
Sbjct: 350 RHADAR-WRQTPETIQELVQLQQNLLDRAATWV-----------KPGGTLVYATCTLHPA 397
Query: 243 ENEAVIAWILHRHPEVELVQTLPQ 266
ENEA + L HP+ ++ P+
Sbjct: 398 ENEAQVNRFLQTHPDWHILPPAPE 421
>gi|378727985|gb|EHY54444.1| ribosomal RNA small subunit methyltransferase F [Exophiala
dermatitidis NIH/UT8656]
Length = 717
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 94/292 (32%), Positives = 137/292 (46%), Gaps = 51/292 (17%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V ++ + L P LAGHY L QP +
Sbjct: 324 LINRGVVLEPVGKWSKVGLQVFEAPV-PLGATPEYLAGHYILQAASSFLPVMALAPQPNE 382
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
++LDM AAPG K T+I+ LM +TG + A D +K R L I +L + YD+ +
Sbjct: 383 RILDMAAAPGGKTTYISALMRNTGVVFANDANKQRAKGLIGNIHRLGCKNTIVCNYDAQK 442
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSG---FGQRPMF---YNANSFLNLDKKIKSYA 201
FDR+LLDAPCSG G+ P N FL L
Sbjct: 443 A----------FPKVLGGFDRVLLDAPCSGTGVIGKDPSVKTSKNERDFLAL-------P 485
Query: 202 NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
++QK+LL A G G +VY TCS++VEENEAV+ ++L + P V++V
Sbjct: 486 HMQKQLLLAAIDSTDHSSKTG-------GYIVYSTCSVTVEENEAVVQYVLRKRPNVKIV 538
Query: 262 QT-LPQLGMKGL-AHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
T L G +G ++ + + +D+ + R P N D GFF+ KL+K
Sbjct: 539 DTGLGNFGSEGFKSYMNKKFDDKMSLTRR---YFPHRENVD--GFFVAKLKK 585
>gi|291190482|ref|NP_001167121.1| RNA methyltransferase NOL1 [Salmo salar]
gi|223648240|gb|ACN10878.1| RNA methyltransferase NOL1 [Salmo salar]
Length = 747
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 136/293 (46%), Gaps = 56/293 (19%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV ++ S+V V DSS+ I P LAGHY L Q G+
Sbjct: 322 LINRGVNLDPLGKWSKVGLVIFDSSVPIGAT-PEYLAGHYMLQGASSFLPVMALSPQEGE 380
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
VLDM +APG K T++A LM +TG ++A D S R+ + I +L +++ YD +
Sbjct: 381 TVLDMSSAPGGKTTYMAQLMRNTGVIVANDASADRLKSVVGNIHRLGVTNSMICNYDGRQ 440
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYANIQ 204
FDR+LLDAPCSG G + P + + I A++Q
Sbjct: 441 FPKVMG-----------GFDRVLLDAPCSGTGVISKDPAVKTSKD----ESDILRLAHLQ 485
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL 264
K+L+ A V+ G G LVYCTCS+ VEENE V+ + L + V+LVQT
Sbjct: 486 KELILAAIDSVNAESPSG-------GYLVYCTCSIMVEENEWVVDYALKKR-NVKLVQTG 537
Query: 265 PQLGMKGLAHKDLEAEDQAVMQRFGPPL------IPTDRNTDTIGFFICKLRK 311
G +G + +RF P L P N D GFF+ KL+K
Sbjct: 538 LDFGKEGFT--------RFKERRFHPSLKLSRRFYPHSHNMD--GFFVAKLKK 580
>gi|429737562|ref|ZP_19271420.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
oral taxon 138 str. F0429]
gi|429152368|gb|EKX95198.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
oral taxon 138 str. F0429]
Length = 448
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 125/271 (46%), Gaps = 47/271 (17%)
Query: 45 GVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIA 104
G+ + L +P L + + +Q+ S+L H L +PG V+D CAAPG K THIA
Sbjct: 220 GIVLHAHGALDDLP--PLRAGLAQVQDESSMLVAHVLGAEPGMTVIDTCAAPGGKTTHIA 277
Query: 105 LLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE 164
M + G ++A D + ++ ++E+ ++L +S I+ + D+ I + +
Sbjct: 278 QRMENRGRILAFDIYEEKIRRIEQNARRLGISIIEAEMRDAREIGAAYEA---------- 327
Query: 165 SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIP 224
DR+L+DAPCSG G +A + + K+ IQ+ +L + R V
Sbjct: 328 MADRVLVDAPCSGLGVLRRKSDARWKKSASDR-KTLPPIQRAILASAARAV--------- 377
Query: 225 LLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT---LPQLGMKGLAHKDLEAED 281
K G+LVY TC++ EN AV+ L HP L QT LP+
Sbjct: 378 --KSGGVLVYSTCTMEECENAAVVQDFLRAHPHFTLEQTGAFLPE--------------- 420
Query: 282 QAVMQRFGPPLIPTDRNTDT-IGFFICKLRK 311
Q+ P++ TD GFFI ++R+
Sbjct: 421 ----QKTAEPMVQIMPETDGPDGFFIARMRR 447
>gi|302501985|ref|XP_003012984.1| hypothetical protein ARB_00867 [Arthroderma benhamiae CBS 112371]
gi|291176545|gb|EFE32344.1| hypothetical protein ARB_00867 [Arthroderma benhamiae CBS 112371]
Length = 689
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 97/305 (31%), Positives = 139/305 (45%), Gaps = 66/305 (21%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +S + L P LAGHY L QP +
Sbjct: 328 LINRGVVLEPVGKWSKVGLQVFESPV-PLGATPEYLAGHYILQAASSFLPVMALAPQPHE 386
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
++LDM AAPG K T+ + LM +TG+++A D SK R L I +L + D+
Sbjct: 387 RILDMAAAPGGKTTYASALMRNTGSILANDASKTRAKGLIGNIHRLGCKNTIVSNMDA-- 444
Query: 148 INTSSQIDIERMKLQKE--SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYA---- 201
R K FDR+LLDAPCSG G ++ D K+K+
Sbjct: 445 ----------RTAFPKAIGGFDRVLLDAPCSGTG----------VISKDPKVKTSKTERD 484
Query: 202 -----NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHP 256
++QK+LL A + G G +VY TCS++VEENE V+ + L + P
Sbjct: 485 FLALPHMQKQLLLAAIDSTNHASKTG-------GYIVYSTCSVTVEENEGVVQYALRKRP 537
Query: 257 EVELVQT----LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKK 312
V++V T G K +K + E + +R+ P N D GFF+CKL KK
Sbjct: 538 NVKIVDTGLGNFGTPGFKSYMNKKFD-EKMPLTRRY----YPHRENVD--GFFVCKL-KK 589
Query: 313 YGEAP 317
G +P
Sbjct: 590 TGPSP 594
>gi|327301379|ref|XP_003235382.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Trichophyton rubrum CBS
118892]
gi|326462734|gb|EGD88187.1| nucleolar protein NOP2 [Trichophyton rubrum CBS 118892]
Length = 690
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 97/303 (32%), Positives = 140/303 (46%), Gaps = 62/303 (20%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +S + L P LAGHY L QP +
Sbjct: 329 LINRGVVLEPVGKWSKVGLQVFESPV-PLGATPEYLAGHYILQAASSFLPVMALAPQPHE 387
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
++LDM AAPG K T+ + LM +TG+++A D SK R L I +L + D+
Sbjct: 388 RILDMAAAPGGKTTYASALMRNTGSILANDASKTRAKGLIGNIHRLGCKNTIVSNMDA-- 445
Query: 148 INTSSQIDIERMKLQKE--SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYA---- 201
R K FDR+LLDAPCSG G ++ D K+K+
Sbjct: 446 ----------RTAFPKAIGGFDRVLLDAPCSGTG----------VISKDPKVKTSKTERD 485
Query: 202 -----NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHP 256
++QK+LL A + G G +VY TCS++VEENE V+ + L + P
Sbjct: 486 FLALPHMQKQLLLAAIDSTNHASKTG-------GYIVYSTCSVTVEENEGVVQYALRKRP 538
Query: 257 EVELVQT-LPQLGMKGL-AHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKKYG 314
V++V T L G G + + + +D+ + R P N D GFF+CKL KK G
Sbjct: 539 NVKIVDTGLGNFGTPGFKSFMNKKFDDKMPLTRR---YYPHRENVD--GFFVCKL-KKTG 592
Query: 315 EAP 317
+P
Sbjct: 593 PSP 595
>gi|406697452|gb|EKD00711.1| nucleolar RNA m(5)C methyltransferase, Nop2p [Trichosporon asahii
var. asahii CBS 8904]
Length = 669
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 87/292 (29%), Positives = 141/292 (48%), Gaps = 55/292 (18%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +S + + P LAGHY L QPG+
Sbjct: 319 LINRGVTLEPIGKWSKVGLQVFESPVPVGAT-PEYLAGHYMLQAASSFLPVIALAPQPGE 377
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM +APG K T+++ LM +TGT+ A D +K R L + ++ ++ YD+
Sbjct: 378 RVLDMASAPGGKTTYLSALMQNTGTVFANDSNKARTKSLTANVHRMGCKNVVVCNYDAR- 436
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY---ANIQ 204
+ R+ FDR+LLDAPCSG G + ++ + ++K K + A++Q
Sbjct: 437 -------EFPRV---IGGFDRVLLDAPCSGTG----VISKDASVKVNKTEKDFQMLAHLQ 482
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL 264
K+L+ ++ P G LVY TCS++V+E+E+V+ + L + P V+LV+T
Sbjct: 483 KQLILCALDSIN-------PNSATGGYLVYSTCSITVDEDESVVDYALRKRPHVKLVETG 535
Query: 265 PQLGMKGLAHKDLEAEDQAVMQRFGPPL------IPTDRNTDTIGFFICKLR 310
+ G+ G E + F P L P N D GF++ K +
Sbjct: 536 LEFGVPGFT--SFEG------KHFHPSLSLTRRYYPHKHNMD--GFYVAKFK 577
>gi|401888795|gb|EJT52744.1| nucleolar RNA m(5)C methyltransferase, Nop2p [Trichosporon asahii
var. asahii CBS 2479]
Length = 669
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 87/292 (29%), Positives = 141/292 (48%), Gaps = 55/292 (18%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +S + + P LAGHY L QPG+
Sbjct: 319 LINRGVTLEPIGKWSKVGLQVFESPVPVGAT-PEYLAGHYMLQAASSFLPVIALAPQPGE 377
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM +APG K T+++ LM +TGT+ A D +K R L + ++ ++ YD+
Sbjct: 378 RVLDMASAPGGKTTYLSALMQNTGTVFANDSNKARTKSLTANVHRMGCKNVVVCNYDAR- 436
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY---ANIQ 204
+ R+ FDR+LLDAPCSG G + ++ + ++K K + A++Q
Sbjct: 437 -------EFPRV---IGGFDRVLLDAPCSGTG----VISKDASVKVNKTEKDFQMLAHLQ 482
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL 264
K+L+ ++ P G LVY TCS++V+E+E+V+ + L + P V+LV+T
Sbjct: 483 KQLILCALDSIN-------PNSATGGYLVYSTCSITVDEDESVVDYALRKRPHVKLVETG 535
Query: 265 PQLGMKGLAHKDLEAEDQAVMQRFGPPL------IPTDRNTDTIGFFICKLR 310
+ G+ G E + F P L P N D GF++ K +
Sbjct: 536 LEFGVPGFT--SFEG------KHFHPSLSLTRRYYPHKHNMD--GFYVAKFK 577
>gi|423511899|ref|ZP_17488430.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuA2-1]
gi|402450160|gb|EJV81994.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuA2-1]
Length = 444
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 118/245 (48%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ + G VLD CAAPG K THIA ++ TG +++LD +V +E+
Sbjct: 232 IQDESSMLVARALEPKKGDTVLDSCAAPGGKTTHIAERLDGTGKVMSLDLHAHKVRLIEQ 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
K+L L +++T D+ ++ ESFD+IL+DAPCSGFG + +
Sbjct: 292 QAKRLGLENVETMALDARKVQEH---------FANESFDKILVDAPCSGFG--VIRRKPD 340
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 341 IKLGKDKGDSERLSTIQLAILEKI-----------APLLKQGGRLVYSTCTIEKIENEQV 389
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E T+ K + L R P TD GF+I
Sbjct: 390 IKQFLQEHPEFEWDTTI-----KDRMPEKLNPYIDEGQVRILPHYFATD------GFYIA 438
Query: 308 KLRKK 312
LRKK
Sbjct: 439 CLRKK 443
>gi|392957476|ref|ZP_10322999.1| 16S rRNA methyltransferase B [Bacillus macauensis ZFHKF-1]
gi|391876439|gb|EIT85036.1| 16S rRNA methyltransferase B [Bacillus macauensis ZFHKF-1]
Length = 457
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/242 (32%), Positives = 122/242 (50%), Gaps = 36/242 (14%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L + + +LD CAAPG K THIA L+N++G+++ALD K +V +EE
Sbjct: 235 IQDESSMLVARGLGPKESETILDACAAPGGKTTHIAELLNNSGSVVALDLHKHKVKLIEE 294
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
K+L L++I+T DS + SFDRIL+DAPC+GFG ++P
Sbjct: 295 QAKRLHLTNIETKAMDSRKAPE---------HFPPASFDRILVDAPCTGFGVIRKKPDL- 344
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ ++ I + IQ ++L +V LLK G LVY TC++ EEN+
Sbjct: 345 ---KWSKKEEDIHRISTIQMEILNSV-----------ATLLKPGGTLVYSTCTVDHEENQ 390
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
V L HPE Q+ Q M + ++ E+ V ++P N+D GF+
Sbjct: 391 EVAQQFLATHPEFTWDQSF-QARMPEVVKPYMDPEEAQVQ------ILPHYFNSD--GFY 441
Query: 306 IC 307
+
Sbjct: 442 LA 443
>gi|254490995|ref|ZP_05104176.1| ribosomal RNA small subunit methyltransferase B [Methylophaga
thiooxidans DMS010]
gi|224463508|gb|EEF79776.1| ribosomal RNA small subunit methyltransferase B [Methylophaga
thiooxydans DMS010]
Length = 406
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 90/272 (33%), Positives = 132/272 (48%), Gaps = 50/272 (18%)
Query: 45 GVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIA 104
GV + ++ +PN ++ M +Q+ + L LD+QP Q +LD CAAPG K HI
Sbjct: 181 GVLLSKAYDVNALPN--FETGMASVQDGAAQLVVKMLDIQPDQHILDACAAPGGKSCHI- 237
Query: 105 LLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE 164
L + TL+ALD S R+ ++E+ + +LQL + Q D++ +T + D E
Sbjct: 238 LEQHPDNTLVALDISAERLKQIEQNLSRLQLGA-QLKAADAS--DTDAWWD-------GE 287
Query: 165 SFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQ 221
FDRIL+DAPCSG G + P L + I S A+ Q++LL ++
Sbjct: 288 LFDRILIDAPCSGSGVIRRHPDI----KLLRRPEDITSLAHTQQQLLDKLW--------- 334
Query: 222 GIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAED 281
PLLK DG++VY TCS +ENE I L RHP+ K+L E
Sbjct: 335 --PLLKADGLMVYTTCSAFKKENEQQIEAFLQRHPDA----------------KELRFEQ 376
Query: 282 QAVMQR-FGPPLIPTDRNTDTIGFFICKLRKK 312
R +G +P D D GF+ LR++
Sbjct: 377 APATARPYGYQRLPGDDVMD--GFYYACLRRR 406
>gi|422344990|ref|ZP_16425913.1| ribosomal RNA small subunit methyltransferase B [Selenomonas noxia
F0398]
gi|355376132|gb|EHG23393.1| ribosomal RNA small subunit methyltransferase B [Selenomonas noxia
F0398]
Length = 448
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 121/253 (47%), Gaps = 43/253 (16%)
Query: 62 LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKP 121
L + +Q S+L H L +PG V+D CAAPG K THIA M + G ++A D +
Sbjct: 235 LHEGLAQVQGESSMLVAHVLAPEPGMTVIDACAAPGGKTTHIAQRMENRGRILAFDIYEE 294
Query: 122 RVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG-- 179
++ ++E K+L +S I+T V D+ I KE DR+L+DAPCSG G
Sbjct: 295 KIRRIERNAKRLSVSIIETAVLDAREIGVH----------YKEQADRVLVDAPCSGLGVL 344
Query: 180 -QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS 238
++P D + + A+ +K L + R + Q + +K G+LVY TC+
Sbjct: 345 RRKP-----------DARWRKSAS-DRKTLPPLQREILASAAQAV---RKGGVLVYSTCT 389
Query: 239 LSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRN 298
+ EN AV+ L HP+ L +T L K A + ++ ++P
Sbjct: 390 MEDCENTAVVEHFLKTHPDFSLEETGAFLPGKKRAEQMVQ-------------IMPETDG 436
Query: 299 TDTIGFFICKLRK 311
D GFFI ++R+
Sbjct: 437 PD--GFFIARMRR 447
>gi|42560767|ref|NP_975218.1| Sun family protein [Mycoplasma mycoides subsp. mycoides SC str.
PG1]
gi|42492263|emb|CAE76860.1| Sun family protein [Mycoplasma mycoides subsp. mycoides SC str.
PG1]
Length = 432
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 125/247 (50%), Gaps = 60/247 (24%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ SIL L+ KVLDMC+APG KLTH+++++ +TG +I + ++ ++ ++E
Sbjct: 236 IQDKASILVSQILNPSLNTKVLDMCSAPGGKLTHLSMILKNTGNIIGNEINESKIKLIKE 295
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
I +L +I D+ +I QKE FD +LLDAPCSGFG ++P
Sbjct: 296 NINRLNCLNISLTNMDARKIK------------QKEEFDYVLLDAPCSGFGVFKRKPEIK 343
Query: 186 NANSFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
L D+ ++ S N+Q++LL++ Y LK +G +VY TC+++ +EN
Sbjct: 344 -----LRFDQVQVNSIINLQEELLESAYYN-----------LKNNGEMVYSTCTINQDEN 387
Query: 245 EAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
+ I L+RH + M L K Q FG + NTD GF
Sbjct: 388 QNQITKFLNRHED-----------MVKLYEK----------QIFG-----FEENTD--GF 419
Query: 305 FICKLRK 311
+ICKL+K
Sbjct: 420 YICKLKK 426
>gi|425454955|ref|ZP_18834680.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9807]
gi|389804235|emb|CCI16917.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9807]
Length = 446
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 147/314 (46%), Gaps = 42/314 (13%)
Query: 5 QSQCYCLWLDRAGFVSVLRLPAR-QRPSLSIYCYALDILFRGV----AVEITNVLSQVPN 59
+++ C W +R+ + + P + R +L + +I F + A +T+ L +
Sbjct: 168 ETEQLCQWFNRSPDLDIRINPLKTSREALENELESANITFNHLKLPLACRLTSGLGNIER 227
Query: 60 V-ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDK 118
+ + LQ++ + L + LD QPG+ ++D CAAPG K THIA LM D G ++A D+
Sbjct: 228 LEGFRAGNYTLQDISAQLVTYLLDPQPGETIIDACAAPGGKTTHIAELMGDRGRILACDQ 287
Query: 119 SKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGF 178
+ R+ +LE IK+L L +I+ H+ DS I DR+L+DAPCSG
Sbjct: 288 TASRLRQLEANIKRLDLKAIEIHLGDSRDRPQWCGI-----------ADRVLIDAPCSGL 336
Query: 179 GQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS 238
G + + + + A Q +LL + +V K GILVY TC+
Sbjct: 337 GTLHKLPDIR-WRQTPENLPVLAKRQGELLASAATWV-----------KPKGILVYATCT 384
Query: 239 LSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRN 298
L+ ENE VI L HP+ ++ P + + E A+ ++P N
Sbjct: 385 LNPLENERVIEQFLAAHPDWKMAP--PD---SNSSFSEYYTETGAI------EVLPHRHN 433
Query: 299 TDTIGFFICKLRKK 312
D GFF+ KL K+
Sbjct: 434 QD--GFFMAKLVKE 445
>gi|425450552|ref|ZP_18830377.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 7941]
gi|389768554|emb|CCI06369.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 7941]
Length = 446
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 80/263 (30%), Positives = 128/263 (48%), Gaps = 29/263 (11%)
Query: 5 QSQCYCLWLDRAGFVSVLRLPAR-QRPSLSIYCYALDILFRGV----AVEITNVLSQVPN 59
+++ C W +R+ + + P + R +L + +I F + A +T+ L +
Sbjct: 168 ETEQLCQWFNRSPDLDIRINPLKTSREALENELESANITFHHLKLPLACRLTSGLGNIER 227
Query: 60 V-ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDK 118
+ + LQ++ + L + LD QPG+ ++D CAAPG K THIA LM D G ++A D+
Sbjct: 228 LEGFRAGNYTLQDISAQLVTYLLDPQPGETIIDACAAPGGKTTHIAELMGDQGRILACDQ 287
Query: 119 SKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGF 178
+ R+ +LE IK+L L +I+ H+ DS I DR+L+DAPCSG
Sbjct: 288 TASRLRQLEANIKRLDLKAIEIHLGDSRDRPQWCGI-----------ADRVLIDAPCSGL 336
Query: 179 GQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS 238
G + + + + A Q +LL + +V K GILVY TC+
Sbjct: 337 GTLHKLPDIR-WRQTPENLPVLAKRQGELLASAATWV-----------KPKGILVYATCT 384
Query: 239 LSVEENEAVIAWILHRHPEVELV 261
L+ ENE VI L HP+ ++
Sbjct: 385 LNPLENEGVIEQFLAAHPDWKIA 407
>gi|367019554|ref|XP_003659062.1| hypothetical protein MYCTH_2295642 [Myceliophthora thermophila ATCC
42464]
gi|347006329|gb|AEO53817.1| hypothetical protein MYCTH_2295642 [Myceliophthora thermophila ATCC
42464]
Length = 733
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 132/292 (45%), Gaps = 53/292 (18%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +SS+ L P LAGHY L Q +
Sbjct: 331 LINRGVTLEPVGKWSKVGLQVFESSV-PLGATPEYLAGHYILQAASSFLPVMALCPQENE 389
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+ LDM AAPG K TH+A LM +TG + A D +K R L I +L ++ YD+
Sbjct: 390 RCLDMAAAPGGKTTHMAALMKNTGVIFANDPNKSRAKGLIGNIHRLGARNVIVCNYDARE 449
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANIQKK 206
FDR+LLDAPCSG G + + + N D+K + QK+
Sbjct: 450 FPRVIG-----------GFDRVLLDAPCSGTGV--ISKDPSVKTNRDEKDFIQLPHTQKQ 496
Query: 207 LLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQ 266
LL A + G G +VY TCS++VEENE V+A+ L R P V LV+T
Sbjct: 497 LLLAAIDSTNHASKTG-------GYIVYSTCSVAVEENEQVVAYALSRRPNVRLVETGLP 549
Query: 267 LGMKGLA-------HKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
G +G H L+ + +RF P L D GFF+ K +K
Sbjct: 550 FGKEGFTSYMGKSFHPSLK-----LTRRFYPHLYNVD------GFFVAKFKK 590
>gi|229086418|ref|ZP_04218594.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock3-44]
gi|228696934|gb|EEL49743.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock3-44]
Length = 431
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/247 (33%), Positives = 116/247 (46%), Gaps = 38/247 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L G KVLD CAAPG K THIA + TG +++LD +V +++
Sbjct: 219 IQDESSMLVARALAPAEGDKVLDSCAAPGGKTTHIAERLKGTGQVMSLDLHPHKVRLIQQ 278
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
K+L L +++T D+ ++ ESFD+IL+DAPCSGFG ++P
Sbjct: 279 QAKRLGLENVETKALDARKVEEH---------FANESFDKILVDAPCSGFGVIRRKPDIK 329
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ ++ + IQ +L+ V PLLK G LVY TC++ ENE
Sbjct: 330 LGKEKGDSER----LSTIQLSILEKV-----------APLLKTGGRLVYSTCTIEKIENE 374
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
VI L HPE E T MKG + L + P TD GF+
Sbjct: 375 QVIEQFLQEHPEFEWDTT-----MKGRMPEKLHPYINEGQVQILPHYFATD------GFY 423
Query: 306 ICKLRKK 312
I LRKK
Sbjct: 424 IACLRKK 430
>gi|156063948|ref|XP_001597896.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Sclerotinia sclerotiorum 1980
UF-70]
gi|154697426|gb|EDN97164.1| hypothetical protein SS1G_02092 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 713
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 140/296 (47%), Gaps = 48/296 (16%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +S++ L P LAGHY L Q +
Sbjct: 327 LINRGVVLEPVGKWSKVGLQIFESAV-PLGATPEYLAGHYILQAASSFLPVMALAPQENE 385
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM +APG K THIA LM +TG + A D +K R L I +L ++ YD+
Sbjct: 386 RVLDMASAPGGKTTHIAALMKNTGCIFANDSNKSRAKGLIGNIHRLGAKNVIVCNYDARE 445
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY---ANIQ 204
FDR+LLDAPCSG G ++ + +K + + ++Q
Sbjct: 446 FPKVIG-----------GFDRVLLDAPCSGTG----VIAKDASVKTNKTERDFLMLPHLQ 490
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL 264
K+LL + V G G +VY TCS++VEENE V+ ++L++ P V+LV+T
Sbjct: 491 KQLLLSAIDSVDHASKTG-------GYIVYSTCSVTVEENEQVVQYVLNKRPNVKLVETG 543
Query: 265 PQLGMKGLAHKDLEAEDQ--AVMQRFGPPLIPTDRNTDTIGFFICKLRKKYGEAPE 318
G +G ++ D+ + +R+ P D GFF+ K KK G +P+
Sbjct: 544 LAFGKEGFTSYMGKSFDKNMKMTRRYYPHAYNVD------GFFVSKF-KKTGPSPK 592
>gi|159476732|ref|XP_001696465.1| hypothetical protein CHLREDRAFT_38989 [Chlamydomonas reinhardtii]
gi|158282690|gb|EDP08442.1| predicted protein [Chlamydomonas reinhardtii]
Length = 360
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 96/297 (32%), Positives = 144/297 (48%), Gaps = 56/297 (18%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV+++ S+V V ++ + I P +AGHY L Q
Sbjct: 92 AAALIQRGVSLDPIGPWSKVGLVVYETKVPIGAT-PEYMAGHYMLQGASSFMPVMALAPQ 150
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
P + V+DM AAPG K T+IA LM +TGT+ A + +K R+ + + +L +++ YD
Sbjct: 151 PEETVVDMAAAPGGKTTYIAALMRNTGTVFANEINKDRLKSITGNLTRLGVTNTVVCNYD 210
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYA 201
+ Q+ L + S DR+LLDAPCSG G + P + S + I
Sbjct: 211 GKEL---PQV------LGQRSVDRVLLDAPCSGTGVVSKDPSVKTSKS----QQDIWRCG 257
Query: 202 NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
++QK+LL A V G G +VY TCS+ VEE+EAV+ + L R V++V
Sbjct: 258 HLQKQLLLAAIDLVDANSTTG-------GYVVYSTCSVCVEEDEAVVNYAL-RKRNVKVV 309
Query: 262 QTLPQLGMKG-LAHKDLEAEDQAVMQRFGPPL------IPTDRNTDTIGFFICKLRK 311
T + G +G + ++D RF P L P N D GFF+CKL+K
Sbjct: 310 PTGLEFGREGFIRYRDF---------RFHPSLKHARRFYPHAHNLD--GFFVCKLKK 355
>gi|213405703|ref|XP_002173623.1| Nop16-like protein NOP2 [Schizosaccharomyces japonicus yFS275]
gi|212001670|gb|EEB07330.1| Nop16-like protein NOP2 [Schizosaccharomyces japonicus yFS275]
Length = 617
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 92/304 (30%), Positives = 141/304 (46%), Gaps = 60/304 (19%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E ++V DS + I P LAGHY L QP +
Sbjct: 286 LINRGVNLEPIGKWTKVGLQVFDSQVPIGAT-PEYLAGHYILQAASSFLPVMALAPQPHE 344
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
++LDM +APG K+T+IA L ++G + A D +K R+ L I +L + + YD
Sbjct: 345 RILDMSSAPGGKVTYIAALQKNSGVIFANDSNKARIKALSANIHRLGVRNTIVCNYDG-- 402
Query: 148 INTSSQIDIERMKLQKE---SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY---A 201
K +E FDR++LDAPCSG G + + + +K +
Sbjct: 403 -----------RKFPEEVLGGFDRVMLDAPCSGTG----VIHKDQSVKANKTAHDFDMLG 447
Query: 202 NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
++Q++LL + V G G +VY TCS++V+E+EAVI + L + P V+LV
Sbjct: 448 HLQRQLLLSAIDSVDAESKTG-------GYIVYSTCSITVDEDEAVIQYALKKRPNVKLV 500
Query: 262 QTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRKKYGE 315
T + G +G + +RF P L T R N D GF++ KL+K +
Sbjct: 501 STGLEFGREGFT--------RYREKRFHPSLKLTRRYYPHVHNID--GFYVAKLKKLSNK 550
Query: 316 APEI 319
P I
Sbjct: 551 IPTI 554
>gi|367044302|ref|XP_003652531.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Thielavia terrestris NRRL
8126]
gi|346999793|gb|AEO66195.1| hypothetical protein THITE_2114134 [Thielavia terrestris NRRL 8126]
Length = 712
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 135/292 (46%), Gaps = 53/292 (18%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +S++ L P LAGHY L Q +
Sbjct: 327 LINRGVTLEPVGKWSKVGLQVFESNV-PLGATPEYLAGHYILQAASSFLPVMALCPQENE 385
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM AAPG K TH+A LM +TG + A D +K R L I +L + + YD+
Sbjct: 386 RVLDMAAAPGGKTTHMAALMKNTGVIFANDPNKARAKGLIGNIHRLGVRNAIVCNYDARE 445
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANIQKK 206
FDR+LLDAPCSG G + + + N D+K + QK+
Sbjct: 446 FPKVIG-----------GFDRVLLDAPCSGTGV--IAKDPSVKTNRDEKDFLRLPHTQKQ 492
Query: 207 LLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQ 266
LL A V+ G G +VY TCS++VEENE V+A+ L R P V+LV+T
Sbjct: 493 LLLAAIDSVNHASKTG-------GYIVYSTCSVAVEENEQVVAYALSRRPNVKLVETGLP 545
Query: 267 LGMKGLA-------HKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
G +G H L+ + +R+ P L D GFF+ K +K
Sbjct: 546 FGKEGFTSYMGKTFHPSLK-----LTRRYYPHLYNID------GFFVAKFQK 586
>gi|307276657|ref|ZP_07557775.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX2134]
gi|306506767|gb|EFM75919.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX2134]
Length = 459
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 129/252 (51%), Gaps = 50/252 (19%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDT--GTLIALDKSKPRVTKL 126
+Q+ S+L + ++P +VLD CAAPG K THIA + G + +LD ++ +
Sbjct: 242 IQDESSMLVAPAMQIEPHHRVLDACAAPGGKTTHIATFLEAEAGGRVTSLDIHAHKIKLI 301
Query: 127 EETIKKLQLSSI-QTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP 182
E ++L ++ + Q D+ ++ + E+FDRIL+DAPCSG G ++P
Sbjct: 302 NENAQRLHVADVVQAEKLDARQVAE---------EFPAETFDRILVDAPCSGLGLMRRKP 352
Query: 183 ---MFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSL 239
AN F NL K IQ ++L+ V P LK+ GI+VY TC++
Sbjct: 353 DIKYHKTANDFQNLPK-------IQLEILENV-----------APTLKQWGIMVYSTCTI 394
Query: 240 SVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNT 299
+ EEN+ V+A L +HPE E ++ +A++++ QAV++ L P T
Sbjct: 395 TPEENQEVVAAFLAKHPEFEKIEI--------VANENV----QAVVKEQELVLYPHQYMT 442
Query: 300 DTIGFFICKLRK 311
D GFFIC +RK
Sbjct: 443 D--GFFICCMRK 452
>gi|423612082|ref|ZP_17587943.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD107]
gi|401247089|gb|EJR53433.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD107]
Length = 444
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 117/245 (47%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G VLD CAAPG K THIA ++ TG +++LD +V +E+
Sbjct: 232 IQDESSMLVARALEPNKGDAVLDSCAAPGGKTTHIAERLDGTGKVMSLDLHAHKVRLIEQ 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
K+L L +++T D+ ++ ESFD+IL+DAPCSGFG + +
Sbjct: 292 QAKRLGLENVETMALDARKVQEH---------FANESFDKILVDAPCSGFG--VIRRKPD 340
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 341 IKLGKDKGDSERLSTIQLAILEKI-----------APLLKQGGRLVYSTCTIEKIENEQV 389
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E T+ K + L R P TD GF+I
Sbjct: 390 IKQFLQEHPEFEWDTTI-----KERMPEKLNPYIDGGQVRILPHYFATD------GFYIA 438
Query: 308 KLRKK 312
LRKK
Sbjct: 439 CLRKK 443
>gi|402833087|ref|ZP_10881709.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
CM52]
gi|402281454|gb|EJU30089.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
CM52]
Length = 443
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 119/244 (48%), Gaps = 37/244 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L H L +PG+ VLD+C+APG K THIA M D G ++ALD + ++ ++ E
Sbjct: 237 VQDESSMLVAHILAPEPGEFVLDVCSAPGGKTTHIAASMGDRGRIVALDVHEHKMRRIAE 296
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
++L + S++ + D+ R Q DR+L+DAPCSG G +A
Sbjct: 297 NCERLGIKSVEPLLLDAREAG-------RRFSRQA---DRVLVDAPCSGLGVLRRKPDAR 346
Query: 189 SFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVI 248
D + + A +Q+++L + V K G+LVY TC++ EENEAV+
Sbjct: 347 WRKRPD-DLAALARLQREILSSAAEAV-----------KSGGVLVYSTCTIEREENEAVV 394
Query: 249 AWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICK 308
L RH E L L +K + L+ L P TD GFFI +
Sbjct: 395 EDFLARHEEFSLENAGELLPLKKRPERMLQ-------------LYPQRDGTD--GFFIAR 439
Query: 309 LRKK 312
+R++
Sbjct: 440 MRRR 443
>gi|348549808|ref|XP_003460725.1| PREDICTED: putative methyltransferase NSUN6-like, partial [Cavia
porcellus]
Length = 217
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 107/221 (48%), Gaps = 35/221 (15%)
Query: 111 GTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRI--NTSSQIDIERMKLQKESFDR 168
G +IALDK +V K+++ L L+SI+ +D T+ + ++ E ESFDR
Sbjct: 1 GEVIALDKIPNKVEKIKQNALLLGLNSIKAFCFDGTKALKHDMTEDTQEGPPFSPESFDR 60
Query: 169 ILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKK 228
ILLDAPCSG GQRP + K++ SY +Q+KL + LLK
Sbjct: 61 ILLDAPCSGMGQRPNMACTWTL----KEVMSYQPLQRKLFSVAAQ-----------LLKP 105
Query: 229 DGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRF 288
G+LVY TC++++ ENE +AW L P ++L P++G +G+ L E +QRF
Sbjct: 106 GGMLVYSTCTITLAENEEQVAWALSTFPCLQLQPQEPRIGEEGMMGAGLSLEQLRQLQRF 165
Query: 289 GPPLIPTD------------------RNTDTIGFFICKLRK 311
P +P N D IGFFI K K
Sbjct: 166 DPSAVPLQDPDQDALRDATAEDMIRLANKDCIGFFIAKFLK 206
>gi|433445489|ref|ZP_20409875.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Anoxybacillus
flavithermus TNO-09.006]
gi|432001039|gb|ELK21925.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Anoxybacillus
flavithermus TNO-09.006]
Length = 457
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 124/246 (50%), Gaps = 30/246 (12%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q ++ L PG++VLD+CAAPG K T +A +MN+ G L+A + RV L E
Sbjct: 90 IQEPSAMFVAEVLAPSPGERVLDLCAAPGGKTTQLAAMMNNEGFLLANEIHPKRVKALSE 149
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
I++L +++ T V + T S + E FD+IL+DAPCSG G A
Sbjct: 150 NIERLGITN--TVVTNETPEKLSETFE--------EFFDKILVDAPCSGEGMFRKDAEAI 199
Query: 189 SFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVI 248
F +L+ ++ A Q+ +L Y+ +L + G LVY TC+ S EENE +I
Sbjct: 200 QFWSLE-HVQKCAQTQRHILSCAYK-----------MLSEGGTLVYSTCTFSPEENEQII 247
Query: 249 AWILHRHPEVELVQTLPQLGMK-GLAH-KDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFI 306
W L + ++EL+ + G++ G++H + + A R P + + G F+
Sbjct: 248 DWFLATYEDMELIPIEKEDGIQPGVSHWTNTHRGNIAHTARLWPHHLKGE------GHFV 301
Query: 307 CKLRKK 312
K+RK+
Sbjct: 302 AKMRKR 307
>gi|315640285|ref|ZP_07895402.1| RNA methyltransferase Sun [Enterococcus italicus DSM 15952]
gi|315483947|gb|EFU74426.1| RNA methyltransferase Sun [Enterococcus italicus DSM 15952]
Length = 449
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 90/254 (35%), Positives = 126/254 (49%), Gaps = 52/254 (20%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMN--DTGTLIALDKSKPRVTKL 126
+Q+ S+L L ++PG KVLD CAAPG K THIA ++ G + ALD +V +
Sbjct: 238 IQDESSMLVAPMLAIEPGDKVLDACAAPGGKTTHIATYLDAEKGGEVRALDIHPHKVALI 297
Query: 127 EETIKKLQLSSIQTHVYDSTRINTSSQIDIERMK--LQKESFDRILLDAPCSGFG---QR 181
EE +L + ++ H + Q+D ++ E+FDRIL+DAPCSG G ++
Sbjct: 298 EENAMRLHVETV-VH---------AQQLDARKVSEVFAPETFDRILVDAPCSGIGLIRRK 347
Query: 182 P-MFYNAN--SFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS 238
P + Y F NL K IQ +L++V P LK G +VY TC+
Sbjct: 348 PDIKYQKTPQDFTNLPK-------IQLSILESV-----------APTLKSGGRMVYSTCT 389
Query: 239 LSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRN 298
+ EENE V+A L +HPE ELV+ + ++G A KD M P TD
Sbjct: 390 IMEEENEQVVAAFLAKHPEFELVEPVVSESVRG-AIKDH-------MLTIYPQAFHTD-- 439
Query: 299 TDTIGFFICKLRKK 312
GFFI L+KK
Sbjct: 440 ----GFFISCLQKK 449
>gi|301321426|gb|ADK70069.1| ribosomal RNA small subunit methyltransferase B [Mycoplasma
mycoides subsp. mycoides SC str. Gladysdale]
Length = 423
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 125/247 (50%), Gaps = 60/247 (24%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ SIL L+ KVLDMC+APG KLTH+++++ +TG +I + ++ ++ ++E
Sbjct: 227 IQDKASILVSQILNPSLNTKVLDMCSAPGGKLTHLSMILKNTGNIIGNEINESKIKLIKE 286
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
I +L +I D+ +I QKE FD +LLDAPCSGFG ++P
Sbjct: 287 NINRLNCLNISLTNMDARKIK------------QKEEFDYVLLDAPCSGFGVFKRKPEIK 334
Query: 186 NANSFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
L D+ ++ S N+Q++LL++ Y LK +G +VY TC+++ +EN
Sbjct: 335 -----LRFDQVQVNSIINLQEELLESAYYN-----------LKNNGEMVYSTCTINQDEN 378
Query: 245 EAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
+ I L+RH + M L K Q FG + NTD GF
Sbjct: 379 QNQITKFLNRHED-----------MVKLYEK----------QIFG-----FEENTD--GF 410
Query: 305 FICKLRK 311
+ICKL+K
Sbjct: 411 YICKLKK 417
>gi|229061468|ref|ZP_04198813.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH603]
gi|229134673|ref|ZP_04263482.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BDRD-ST196]
gi|229168605|ref|ZP_04296328.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH621]
gi|228615011|gb|EEK72113.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH621]
gi|228648719|gb|EEL04745.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BDRD-ST196]
gi|228717891|gb|EEL69539.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH603]
Length = 415
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 117/245 (47%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G VLD CAAPG K THIA ++ TG +++LD +V +E+
Sbjct: 203 IQDESSMLVARALEPNKGDTVLDSCAAPGGKTTHIAERLDGTGKVMSLDLHAHKVRLIEQ 262
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
K+L L +++T D+ ++ ESFD+IL+DAPCSGFG + +
Sbjct: 263 QAKRLGLENVETMALDARKVQEH---------FANESFDKILVDAPCSGFG--VIRRKPD 311
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 312 IKLGKDKGDSERLSTIQLAILEKI-----------APLLKQGGRLVYSTCTIEKIENEQV 360
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E T+ K + L R P TD GF+I
Sbjct: 361 IKQFLQEHPEFEWDTTI-----KDRMPEKLNPYIDEGQVRILPHYFATD------GFYIA 409
Query: 308 KLRKK 312
LRKK
Sbjct: 410 CLRKK 414
>gi|392513053|emb|CAD24979.2| NUCLEOLAR PROTEIN (NOL1/NOP2 family) [Encephalitozoon cuniculi
GB-M1]
Length = 306
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 121/248 (48%), Gaps = 35/248 (14%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
LQ S+L +D++ G V+D+CAAPG K THIA LM +TG + A D ++ R+ L+
Sbjct: 91 LQGAASMLPVLNMDLKEGLTVVDLCAAPGGKTTHIAALMENTGVIYANDVNEERIAGLKS 150
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
I+++ + + D ++N DR+LLDAPCSG G + P
Sbjct: 151 NIQRMGVRNCIVMNMDGRKVNVG-------------RVDRVLLDAPCSGTGVISKDPSVK 197
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ + +D+ + +QK+L+ G +LK GIL+Y TCS+ V+ENE
Sbjct: 198 TSRTRSEIDRMV----TLQKELI-----------LHGFGMLKPGGILMYSTCSVLVKENE 242
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
V+ ++L + P ++ + +G G + ++ + + P N D GFF
Sbjct: 243 EVVNYLLSKCPSAKMAECEIDIGKDGFM--SFKGKNYNGSLKMARRIYPHVHNMD--GFF 298
Query: 306 ICKLRKKY 313
K+ KKY
Sbjct: 299 YAKILKKY 306
>gi|357460225|ref|XP_003600394.1| hypothetical protein MTR_3g060700 [Medicago truncatula]
gi|355489442|gb|AES70645.1| hypothetical protein MTR_3g060700 [Medicago truncatula]
Length = 1069
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 96/282 (34%), Positives = 133/282 (47%), Gaps = 37/282 (13%)
Query: 39 LDILFRGVAVEITNVLSQVPNVALDSSMG---ILQNLPSILAGHYLDVQPGQKVLDMCAA 95
LD L + V + SQVP A M +LQ+ S L L Q ++++DM AA
Sbjct: 674 LDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERIVDMAAA 733
Query: 96 PGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQID 155
PG K T+IA LM ++G + A + PR+ L + ++ +S+ YD +
Sbjct: 734 PGGKTTYIAALMKNSGIIFANEMKVPRLKSLTANLHRMGVSNTVVSNYDGKELPKV---- 789
Query: 156 IERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFV 215
L S DR+LLDAPCSG G + + NL+ IK A++QK+LL A V
Sbjct: 790 -----LGFNSVDRVLLDAPCSGTGVISKDESVKTSKNLE-DIKKCAHLQKELLLAAIDMV 843
Query: 216 SLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHK 275
+ G G +VY TCS+ V ENEAVI ++L R +V+LV G G
Sbjct: 844 DSYSKSG-------GYVVYSTCSIMVAENEAVIDYVLKRR-DVKLVPCGLDFGRPGFT-- 893
Query: 276 DLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
+ QRF P L T R N D GFF+ KL+K
Sbjct: 894 ------KFREQRFHPSLDKTRRFYPHVHNMD--GFFVAKLKK 927
>gi|451854377|gb|EMD67670.1| hypothetical protein COCSADRAFT_34463 [Cochliobolus sativus ND90Pr]
Length = 728
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 94/291 (32%), Positives = 136/291 (46%), Gaps = 51/291 (17%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V D+ + L P LAGHY L Q +
Sbjct: 319 LINRGVQLEPVGKWSKVGLQIFDAQV-PLGATPEYLAGHYILQAASSFLPVMALAPQENE 377
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM AAPG K TH+A LM +TG + A D +K R L I +L ++ Y
Sbjct: 378 RVLDMAAAPGGKTTHLAALMKNTGCIFANDANKDRAKGLIGNIHRLGARNVIVSHY---- 433
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLN-LDKKIKSYANIQKK 206
S ++ R+ FDR+LLDAPCSG G + +A+ N + ++QK+
Sbjct: 434 ----SALEFPRV---MSGFDRVLLDAPCSGTGV--IAKDASVKTNKTEADFMKLPHLQKQ 484
Query: 207 LLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQ 266
LL A V+ G G +VY TCS++VEENE V+ + L++ P V+LV+T
Sbjct: 485 LLLAAIDSVNHHSKTG-------GYIVYSTCSVTVEENEQVVQYALNKRPNVKLVETGLT 537
Query: 267 LGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
G +G + + F P + T R N D GFF+ K +K
Sbjct: 538 FGKEGFT--------RIGGKTFHPSMKMTRRYYPHTYNVD--GFFVAKFKK 578
>gi|15668197|ref|NP_246989.1| proliferating cell nuclear antigen [Methanocaldococcus jannaschii
DSM 2661]
gi|2500953|sp|Q60343.1|TRM4_METJA RecName: Full=tRNA (cytosine(48)-C(5))-methyltransferase; AltName:
Full=aTrm4; AltName: Full=tRNA
(cytosine-5-)-methyltransferase Trm4
gi|299856663|pdb|3A4T|A Chain A, Crystal Structure Of Atrm4 From M.Jannaschii With
Sinefungin
gi|299856664|pdb|3A4T|B Chain B, Crystal Structure Of Atrm4 From M.Jannaschii With
Sinefungin
gi|299856676|pdb|3AJD|A Chain A, Crystal Structure Of Atrm4
gi|1592257|gb|AAB98007.1| proliferating-cell nucleolar antigen, FMU/NOL1/NOP2 family
[Methanocaldococcus jannaschii DSM 2661]
Length = 274
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 128/242 (52%), Gaps = 36/242 (14%)
Query: 70 QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEET 129
Q++ S++ L+ + +LDMCAAPG K TH+A LM + GT++A++ SK R L+
Sbjct: 68 QSISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSN 127
Query: 130 IKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANS 189
I ++ V ++ IN + + + + FD+ILLDAPCSG + + N
Sbjct: 128 INRM-------GVLNTIIINADMRKYKDYLLKNEIFFDKILLDAPCSG----NIIKDKNR 176
Query: 190 FLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIA 249
N+ ++ Y ++++K L + GI LLKKDG LVY TCS+ VEENE VI
Sbjct: 177 --NVSEEDIKYCSLRQKELIDI----------GIDLLKKDGELVYSTCSMEVEENEEVIK 224
Query: 250 WILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKL 309
+IL + +VEL+ + KG+ K E + ++ F PP P FFI KL
Sbjct: 225 YILQKRNDVELI-IIKANEFKGINIK--EGYIKGTLRVF-PPNEP---------FFIAKL 271
Query: 310 RK 311
RK
Sbjct: 272 RK 273
>gi|423483455|ref|ZP_17460145.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG6X1-2]
gi|401141006|gb|EJQ48561.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG6X1-2]
Length = 444
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 117/245 (47%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G VLD CAAPG K THIA ++ TG +++LD +V +E+
Sbjct: 232 IQDESSMLVARALEPNKGDAVLDSCAAPGGKTTHIAERLDGTGKVMSLDLHAHKVRLIEQ 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
K+L L +++T D+ ++ ESFD+IL+DAPCSGFG + +
Sbjct: 292 QAKRLGLENVETMALDARKVQEH---------FANESFDKILVDAPCSGFG--VIRRKPD 340
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 341 IKLGKDKGDSERLSTIQLAILEKI-----------APLLKQGGRLVYSTCTIEKIENEQV 389
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E T+ K + L R P TD GF+I
Sbjct: 390 IKQFLQEHPEFEWDTTI-----KDRMPEKLNPYIDEGQVRILPHYFATD------GFYIA 438
Query: 308 KLRKK 312
LRKK
Sbjct: 439 CLRKK 443
>gi|423558572|ref|ZP_17534874.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
MC67]
gi|401191840|gb|EJQ98862.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
MC67]
Length = 444
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 117/245 (47%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G VLD CAAPG K THIA ++ TG +++LD +V +E+
Sbjct: 232 IQDESSMLVARALEPNKGDAVLDSCAAPGGKTTHIAERLDGTGKVMSLDLHAHKVRLIEQ 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
K+L L +++T D+ ++ ESFD+IL+DAPCSGFG + +
Sbjct: 292 QAKRLGLENVETMALDARKVQEH---------FANESFDKILVDAPCSGFG--VIRRKPD 340
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 341 IKLGKDKGDSERLSTIQLAILEKI-----------APLLKQGGRLVYSTCTIEKIENEQV 389
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E T+ K + L R P TD GF+I
Sbjct: 390 IKQFLQEHPEFEWDTTI-----KDRMPEKLNPYIDEGQVRILPHYFATD------GFYIA 438
Query: 308 KLRKK 312
LRKK
Sbjct: 439 CLRKK 443
>gi|440492091|gb|ELQ74688.1| tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2)
[Trachipleistophora hominis]
Length = 305
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 87/286 (30%), Positives = 140/286 (48%), Gaps = 43/286 (15%)
Query: 38 ALDILFRGVAVE----ITNVL----SQVPNVALDSSMG---ILQNLPSILAGHYLDVQPG 86
A ++L RG+ VE +N L S+VP A + +Q SILA LDV+
Sbjct: 50 AKNLLQRGMTVESLDFYSNCLTIYDSKVPVGATPEYLDGWYYIQGASSILAVMNLDVKEH 109
Query: 87 QKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDST 146
VLDMCA+PG K T IA +M +TG L ++ + R++ L + ++
Sbjct: 110 MSVLDMCASPGGKSTFIAEMMKNTGMLYLVENNPERISSLSGNLLRMG------------ 157
Query: 147 RINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKK 206
+ S I++ + L+ E DR+LLDAPCSG G +A + D +K Y +QKK
Sbjct: 158 -VQNSVVINMNVLDLEIEKVDRVLLDAPCSGTGTISKDGHAKTLTEDD--LKRYTEMQKK 214
Query: 207 LLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQ 266
L+ +G LK +GI++Y TCS+ +ENE V+ ++L + ++++
Sbjct: 215 LI-----------LKGFDSLKGNGIMIYSTCSVLADENECVVEYLLRKRKNAKILECEGN 263
Query: 267 LGMKGL-AHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
+G KG A + + + + ++ + P N D GFF K+ K
Sbjct: 264 VGKKGFTAFRGMFFDAK---MKYARRIFPHVHNMD--GFFFVKILK 304
>gi|451999452|gb|EMD91914.1| hypothetical protein COCHEDRAFT_1133863 [Cochliobolus
heterostrophus C5]
Length = 728
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 94/291 (32%), Positives = 136/291 (46%), Gaps = 51/291 (17%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V D+ + L P LAGHY L Q +
Sbjct: 319 LINRGVQLEPVGKWSKVGLQIFDAQV-PLGATPEYLAGHYILQAASSFLPVMALAPQENE 377
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM AAPG K TH+A LM +TG + A D +K R L I +L ++ Y
Sbjct: 378 RVLDMAAAPGGKTTHLAALMKNTGCIFANDANKDRAKGLIGNIHRLGARNVIVSHY---- 433
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLN-LDKKIKSYANIQKK 206
S ++ R+ FDR+LLDAPCSG G + +A+ N + ++QK+
Sbjct: 434 ----SALEFPRV---MSGFDRVLLDAPCSGTGV--IAKDASVKTNKTEADFMKLPHLQKQ 484
Query: 207 LLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQ 266
LL A V+ G G +VY TCS++VEENE V+ + L++ P V+LV+T
Sbjct: 485 LLLAAIDSVNHHSKTG-------GYIVYSTCSVTVEENEQVVQYALNKRPNVKLVETGLT 537
Query: 267 LGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
G +G + + F P + T R N D GFF+ K +K
Sbjct: 538 FGKEGFT--------RIGGKTFHPSMKMTRRYYPHTYNVD--GFFVAKFKK 578
>gi|332710036|ref|ZP_08429991.1| ribosomal RNA small subunit methyltransferase RsmB [Moorea
producens 3L]
gi|332351179|gb|EGJ30764.1| ribosomal RNA small subunit methyltransferase RsmB [Moorea
producens 3L]
Length = 477
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 103/195 (52%), Gaps = 29/195 (14%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ + L + LD QPG V+D CAAPG K THIA LM D G + A D+S R+ K+++
Sbjct: 270 VQDCSAQLVSYLLDPQPGDVVIDACAAPGGKTTHIAELMADQGKIWACDRSASRLKKVQQ 329
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
++L+L SIQ DS + + + +LLDAPCSG G +RP
Sbjct: 330 NAQRLELQSIQISTGDSRDCPEFTNV-----------ANAVLLDAPCSGNGTLHRRPDI- 377
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ +K++ +QK+LL+ +V K G+LVY TC+L+ +ENE
Sbjct: 378 ---RWRMTPEKVQELTVLQKELLEHTATWV-----------KPGGVLVYATCTLNPQENE 423
Query: 246 AVIAWILHRHPEVEL 260
AVI W L H + ++
Sbjct: 424 AVIQWFLEGHSQWQI 438
>gi|334880649|emb|CCB81412.1| putative rRNA methylase [Lactobacillus pentosus MP-10]
Length = 447
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 91/258 (35%), Positives = 133/258 (51%), Gaps = 44/258 (17%)
Query: 61 ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIA--LLMNDTGTLIALDK 118
A+ M +Q+ + L L+VQPG +VLD CAAPG K T IA L + G ++ALD
Sbjct: 228 AMRYGMFTVQDESAQLVVPALNVQPGDQVLDACAAPGGKTTQIAAELDADAGGEVVALDI 287
Query: 119 SKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ--KESFDRILLDAPCS 176
+V + + ++ HV D ++++D +++ Q ESFDRIL+DAPCS
Sbjct: 288 HANKVRLIGQNAARM-------HVADRV---AATELDARKVQTQFDDESFDRILVDAPCS 337
Query: 177 GFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT 236
G G + +K+++ N+QK L A+ V+ P LKK GI+ Y T
Sbjct: 338 GLG----LMRRKPEIRYEKQLQDSLNLQKIQL-AILAAVA-------PTLKKGGIMTYST 385
Query: 237 CSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAE--DQAVMQRFGPPLIP 294
C++ +EN+ VIA L HPE EL QT P +DL+A+ D+ + + P
Sbjct: 386 CTILQQENQDVIAKFLADHPEFEL-QTTP-------TEQDLKADRTDKTL------SIYP 431
Query: 295 TDRNTDTIGFFICKLRKK 312
D +D GFFI LRKK
Sbjct: 432 DDYLSD--GFFIACLRKK 447
>gi|229098334|ref|ZP_04229281.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock3-29]
gi|229117351|ref|ZP_04246729.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock1-3]
gi|228666251|gb|EEL21715.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock1-3]
gi|228685232|gb|EEL39163.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock3-29]
Length = 354
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 120/245 (48%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L LD G+ VLD CAAPG K THIA + TG +++LD +V +++
Sbjct: 142 IQDESSMLVARALDPNEGETVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQ 201
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
++L L +I+T D+ ++ E+FD+IL+DAPCSGFG + +
Sbjct: 202 QAERLGLENIETKALDARKVQEH---------FANETFDKILVDAPCSGFG--VIRRKPD 250
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 251 IKLGKDKGDSERLSTIQLAILEKIA-----------PLLKQGGRLVYSTCTIEKIENEQV 299
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E T+ + + L+ E + Q + F T GF+I
Sbjct: 300 IDKFLKEHPEFEWDTTIKERMPEKLSPYINEGQVQILPHYFA-----------TDGFYIA 348
Query: 308 KLRKK 312
LRKK
Sbjct: 349 CLRKK 353
>gi|423367909|ref|ZP_17345341.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD142]
gi|423470079|ref|ZP_17446823.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG6O-2]
gi|401082770|gb|EJP91035.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD142]
gi|402437331|gb|EJV69355.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG6O-2]
Length = 444
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 117/245 (47%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G VLD CAAPG K THIA ++ TG +++LD +V +E+
Sbjct: 232 IQDESSMLVARALEPNKGDAVLDSCAAPGGKTTHIAERLDGTGKVMSLDLHAHKVRLIEQ 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
K+L L +++T D+ ++ ESFD+IL+DAPCSGFG + +
Sbjct: 292 QAKRLGLENVETMALDARKVQEH---------FANESFDKILVDAPCSGFG--VIRRKPD 340
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 341 IKLGKDKGDSERLSTIQLAILEKI-----------APLLKQGGRLVYSTCTIEKIENEQV 389
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E T+ K + L R P TD GF+I
Sbjct: 390 IKQFLQEHPEFEWDTTI-----KDRMPEKLNPYIDEGQVRILPHYFATD------GFYIA 438
Query: 308 KLRKK 312
LRKK
Sbjct: 439 CLRKK 443
>gi|403222159|dbj|BAM40291.1| nucleolar protein [Theileria orientalis strain Shintoku]
Length = 515
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 91/258 (35%), Positives = 123/258 (47%), Gaps = 51/258 (19%)
Query: 73 PSILAGHY-------------LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKS 119
P L GHY L + +KVLDMCAAPG K THIA MN+TG L A D +
Sbjct: 188 PEYLGGHYMLQSASSLIPVLALGPKQNEKVLDMCAAPGGKTTHIAQFMNNTGILFANDAN 247
Query: 120 KPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG 179
K R L I ++ + +T ++ S D+ ++ L K DRILLDAPCSG G
Sbjct: 248 KERCKSLVSNIHRMGIF--------NTIVSNYSGNDLLKV-LPK--MDRILLDAPCSGLG 296
Query: 180 ---QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT 236
+ P +L K +N+QK+LL + L+K G++VY T
Sbjct: 297 VISRDPSIKVKRGMKDLQKN----SNLQKQLLATC-----------VQLVKPKGVIVYST 341
Query: 237 CSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLA---HKDLEAEDQAVMQRFGPPLI 293
CSLS+EENE VI +IL + V+LV +G + + K+ +RF
Sbjct: 342 CSLSIEENEQVINYILSHYKSVKLVPLGIDIGSEAFSTFRGKNFHPSIGKYARRF----Y 397
Query: 294 PTDRNTDTIGFFICKLRK 311
P N D GFF+ KL K
Sbjct: 398 PHRHNLD--GFFVAKLVK 413
>gi|423522305|ref|ZP_17498778.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuA4-10]
gi|401174999|gb|EJQ82202.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuA4-10]
Length = 444
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 117/245 (47%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G VLD CAAPG K THIA ++ TG +++LD +V +E+
Sbjct: 232 IQDESSMLVARALEPNKGDAVLDSCAAPGGKTTHIAERLDGTGKVMSLDLHAHKVRLIEQ 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
K+L L +++T D+ ++ ESFD+IL+DAPCSGFG + +
Sbjct: 292 QAKRLGLENVETMALDARKVQEH---------FANESFDKILVDAPCSGFG--VIRRKPD 340
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 341 IKLGKDKGDSERLSTIQLAILEKI-----------APLLKQGGRLVYSTCTIEKIENEQV 389
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E T+ K + L R P TD GF+I
Sbjct: 390 IKQFLQEHPEFEWDTTI-----KDRMPEKLNPYIDEGQVRILPHYFATD------GFYIA 438
Query: 308 KLRKK 312
LRKK
Sbjct: 439 CLRKK 443
>gi|297545215|ref|YP_003677517.1| RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|296842990|gb|ADH61506.1| RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 459
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 118/237 (49%), Gaps = 29/237 (12%)
Query: 81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQT 140
LD +PG+K+LD+ AAPG K THIA + D G ++A + K R+ L E ++++ + +I
Sbjct: 99 LDPKPGEKILDVSAAPGGKTTHIATKIGDEGLIVANEIDKKRMKALVENVERMGIRNIVI 158
Query: 141 HVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY 200
++ T+ + FD+IL+DAPCSG G A +L+ I S
Sbjct: 159 TNETPEKLTTAFE----------GYFDKILVDAPCSGEGMFRKDPTARKIWSLNNVI-SC 207
Query: 201 ANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVEL 260
+ QK +L+ V PLLK GILVY TC+ S EENE VI L +PE ++
Sbjct: 208 SITQKNILRNV-----------APLLKPGGILVYSTCTFSPEENEGVIKKFLEEYPEFKV 256
Query: 261 VQT-LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKKYGEA 316
++ + + +G ED R P + + G FI KLRKK GEA
Sbjct: 257 EKSEMSKFFDRGYPEWVEGPEDLKKCMRLWPHKVRGE------GHFIAKLRKKEGEA 307
>gi|295658139|ref|XP_002789632.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226283185|gb|EEH38751.1| Nop16-like protein NOP2 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 677
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 140/299 (46%), Gaps = 54/299 (18%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +SS+ L P LAGHY L QP +
Sbjct: 318 LINRGVVLEPVGKWSKVGLQVFESSV-PLGATPEYLAGHYILQAASSFLPVMALAPQPNE 376
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
++LDM AAPG K T+I+ LM +TG ++A D SK R L I +L + D+
Sbjct: 377 RILDMAAAPGGKTTYISALMRNTGCVLANDASKLRAKGLIGNIHRLGCKNTIVSHLDA-- 434
Query: 148 INTSSQIDIERMKLQK--ESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYAN 202
R K FDRILLDAPCSG G + P + + ++ + +
Sbjct: 435 ----------REAFPKILGGFDRILLDAPCSGTGVISKDPSVKTSKT----ERDFLALPH 480
Query: 203 IQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQ 262
+QK+LL A G G +VY TCS++VEENE+V+ + L + P V++V
Sbjct: 481 MQKQLLLAAIDSTDHASKTG-------GYIVYSTCSVTVEENESVVQYALRKRPNVKIVD 533
Query: 263 T-LPQLGMKGLAH---KDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKKYGEAP 317
T L G G K + E + +R+ P N D GF++CKL KK G +P
Sbjct: 534 TGLGNFGTPGFKSYMGKKFD-EKMTLTRRY----FPHRENVD--GFYVCKL-KKTGLSP 584
>gi|163941603|ref|YP_001646487.1| sun protein [Bacillus weihenstephanensis KBAB4]
gi|423489041|ref|ZP_17465723.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BtB2-4]
gi|423494766|ref|ZP_17471410.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
CER057]
gi|423498442|ref|ZP_17475059.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
CER074]
gi|423592139|ref|ZP_17568170.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD048]
gi|423598824|ref|ZP_17574824.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD078]
gi|423661295|ref|ZP_17636464.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VDM022]
gi|423669439|ref|ZP_17644468.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VDM034]
gi|423674382|ref|ZP_17649321.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VDM062]
gi|163863800|gb|ABY44859.1| sun protein [Bacillus weihenstephanensis KBAB4]
gi|401150859|gb|EJQ58311.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
CER057]
gi|401160491|gb|EJQ67869.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
CER074]
gi|401232272|gb|EJR38774.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD048]
gi|401237094|gb|EJR43551.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD078]
gi|401298566|gb|EJS04166.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VDM034]
gi|401301336|gb|EJS06925.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VDM022]
gi|401309933|gb|EJS15266.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VDM062]
gi|402432289|gb|EJV64348.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BtB2-4]
Length = 444
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 117/245 (47%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G VLD CAAPG K THIA ++ TG +++LD +V +E+
Sbjct: 232 IQDESSMLVARALEPNKGDTVLDSCAAPGGKTTHIAERLDGTGKVMSLDLHAHKVRLIEQ 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
K+L L +++T D+ ++ ESFD+IL+DAPCSGFG + +
Sbjct: 292 QAKRLGLENVETMALDARKVQEH---------FANESFDKILVDAPCSGFG--VIRRKPD 340
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 341 IKLGKDKGDSERLSTIQLAILEKI-----------APLLKQGGRLVYSTCTIEKIENEQV 389
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E T+ K + L R P TD GF+I
Sbjct: 390 IKQFLQEHPEFEWDTTI-----KDRMPEKLNPYIDEGQVRILPHYFATD------GFYIA 438
Query: 308 KLRKK 312
LRKK
Sbjct: 439 CLRKK 443
>gi|427725626|ref|YP_007072903.1| sun protein [Leptolyngbya sp. PCC 7376]
gi|427357346|gb|AFY40069.1| sun protein [Leptolyngbya sp. PCC 7376]
Length = 450
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 87/277 (31%), Positives = 127/277 (45%), Gaps = 58/277 (20%)
Query: 53 VLSQVPN-VALDSSMGILQNLPSILAG-------------HYLDVQPGQKVLDMCAAPGN 98
V++ +PN + L G++Q+LP G H LD QP + ++D CAAPG
Sbjct: 209 VIANLPNALRLTEKRGMIQDLPGYKEGWWTIQDASAQLVSHLLDPQPREVIIDACAAPGG 268
Query: 99 KLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIER 158
K THIA LM D GT+ A DK K R+ K+E+ ++L LS I+T + DS Q+
Sbjct: 269 KTTHIAELMGDEGTIWASDKYKARINKIEQNARRLNLSMIRTLIGDSREYPQFRQM---- 324
Query: 159 MKLQKESFDRILLDAPCSGFG---QRP-MFYNANSFLNLDKKIKSYANIQKKLLQAVYRF 214
DR+LLD PCSG G +RP + + N KI Q +LLQA ++
Sbjct: 325 -------ADRVLLDVPCSGLGTLHKRPDIRWQQNP-----DKIAELTQFQLELLQAGSKW 372
Query: 215 VSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAH 274
V K G LVY TC+++ EN A+ L +P + + A
Sbjct: 373 V-----------KPSGSLVYSTCTINPAENVAIANKFLKENPNWHIAKPDENSPAYSFAS 421
Query: 275 KDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
++ E ++P + D GFF+ K +K
Sbjct: 422 EEGWVE-----------VLPHKHDMD--GFFMVKFQK 445
>gi|199597150|ref|ZP_03210582.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus rhamnosus HN001]
gi|199591954|gb|EDZ00029.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus rhamnosus HN001]
Length = 446
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 122/253 (48%), Gaps = 50/253 (19%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLM--NDTGTLIALDKSKPRVTKL 126
+Q+ S+L LDVQPG +VLD CAAPG K THIA + + G + ALD +V +
Sbjct: 234 MQDESSMLVAPSLDVQPGDQVLDACAAPGGKTTHIAQYLDPDQGGRVTALDLHANKVRLI 293
Query: 127 EETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP 182
++ K+L L + V D+ ++ + ESFD+IL+DAPCSG G ++P
Sbjct: 294 QQNAKRLDLDDRVAAQVMDARQVAAN---------FAAESFDKILVDAPCSGLGLIRRKP 344
Query: 183 MFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVE 242
+ + ++ IQ +L +V P LK G L Y TC++ E
Sbjct: 345 EI----KYTKQPEDLQHLQKIQLAILDSV-----------APTLKIGGRLTYSTCTMVKE 389
Query: 243 ENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPP---LIPTDRNT 299
EN+ V+A L HPE E V P L +K LA + G P L P D +T
Sbjct: 390 ENQDVVAHFLATHPEFEQV---PVLTLKPLA------------KTHGAPALQLFPDDYDT 434
Query: 300 DTIGFFICKLRKK 312
D GFFI L ++
Sbjct: 435 D--GFFIASLIRR 445
>gi|154303546|ref|XP_001552180.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Botryotinia fuckeliana
B05.10]
gi|347840919|emb|CCD55491.1| hypothetical protein [Botryotinia fuckeliana]
Length = 718
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 140/296 (47%), Gaps = 48/296 (16%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +S++ L P LAGHY L Q +
Sbjct: 326 LINRGVVLEPVGKWSKVGLQIFESAV-PLGATPEYLAGHYILQAASSFLPVMALAPQENE 384
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM +APG K THIA LM +TG + A D +K R L I +L ++ YD+
Sbjct: 385 RVLDMASAPGGKTTHIAALMKNTGCIFANDSNKSRAKGLIGNIHRLGAKNVIVCNYDARE 444
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY---ANIQ 204
FDR+LLDAPCSG G ++ + +K + + ++Q
Sbjct: 445 FPRVIG-----------GFDRVLLDAPCSGTG----VIAKDASVKTNKTERDFLMLPHLQ 489
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL 264
K+LL + V G G +VY TCS++VEENE V+ ++L++ P V+LV+T
Sbjct: 490 KQLLLSAIDSVDHASKTG-------GYIVYSTCSVTVEENEQVVQYVLNKRPNVKLVETG 542
Query: 265 PQLGMKGLAHKDLEAEDQ--AVMQRFGPPLIPTDRNTDTIGFFICKLRKKYGEAPE 318
G +G ++ D+ + +R+ P D GFF+ K KK G +P+
Sbjct: 543 LAFGKEGFTSYMGKSFDKNMKMTRRYYPHAYNVD------GFFVSKF-KKTGPSPK 591
>gi|423448370|ref|ZP_17425249.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG5O-1]
gi|401128964|gb|EJQ36647.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG5O-1]
Length = 444
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 120/245 (48%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L LD G+ VLD CAAPG K THIA + TG +++LD +V +++
Sbjct: 232 IQDESSMLVARALDPNEGETVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQ 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
++L L +I+T D+ ++ E+FD+IL+DAPCSGFG + +
Sbjct: 292 QAERLGLENIETKALDARKVQEH---------FANETFDKILVDAPCSGFG--VIRRKPD 340
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 341 IKLGKDKGDSERLSTIQLAILEKI-----------APLLKQGGRLVYSTCTIEKIENEQV 389
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E T+ + + L+ E + Q + F T GF+I
Sbjct: 390 INKFLKEHPEFEWDTTIKERMPEKLSPYINEGQVQILPHYFA-----------TDGFYIA 438
Query: 308 KLRKK 312
LRKK
Sbjct: 439 CLRKK 443
>gi|258508664|ref|YP_003171415.1| tRNA and rRNA cytosine-C5-methytransferase [Lactobacillus rhamnosus
GG]
gi|385828325|ref|YP_005866097.1| RNA methyltransferase [Lactobacillus rhamnosus GG]
gi|257148591|emb|CAR87564.1| tRNA and rRNA cytosine-C5-methytransferase (sun protein)
[Lactobacillus rhamnosus GG]
gi|259649970|dbj|BAI42132.1| RNA methyltransferase [Lactobacillus rhamnosus GG]
Length = 446
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 122/253 (48%), Gaps = 50/253 (19%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLM--NDTGTLIALDKSKPRVTKL 126
+Q+ S+L LDVQPG +VLD CAAPG K THIA + + G + ALD +V +
Sbjct: 234 MQDESSMLVAPSLDVQPGDQVLDACAAPGGKTTHIAQYLDPDQGGRVTALDLHANKVRLI 293
Query: 127 EETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP 182
++ K+L L + V D+ ++ + ESFD+IL+DAPCSG G ++P
Sbjct: 294 QQNAKRLDLDDRVAAQVMDARQVAAN---------FAAESFDKILVDAPCSGLGLIRRKP 344
Query: 183 MFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVE 242
+ + ++ IQ +L +V P LK G L Y TC++ E
Sbjct: 345 EI----KYTKQPEDLQHLQKIQLAILDSV-----------APTLKIGGRLTYSTCTMVKE 389
Query: 243 ENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPP---LIPTDRNT 299
EN+ V+A L HPE E V P L +K LA + G P L P D +T
Sbjct: 390 ENQDVVAHFLATHPEFEQV---PVLTLKPLA------------KTHGAPALQLFPDDYDT 434
Query: 300 DTIGFFICKLRKK 312
D GFFI L ++
Sbjct: 435 D--GFFIASLIRR 445
>gi|229552470|ref|ZP_04441195.1| RNA methyltransferase [Lactobacillus rhamnosus LMS2-1]
gi|258539841|ref|YP_003174340.1| tRNA and rRNA cytosine-C5-methytransferase (sun protein)
[Lactobacillus rhamnosus Lc 705]
gi|385835493|ref|YP_005873267.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
rhamnosus ATCC 8530]
gi|229314207|gb|EEN80180.1| RNA methyltransferase [Lactobacillus rhamnosus LMS2-1]
gi|257151517|emb|CAR90489.1| tRNA and rRNA cytosine-C5-methytransferase (sun protein)
[Lactobacillus rhamnosus Lc 705]
gi|355394984|gb|AER64414.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
rhamnosus ATCC 8530]
Length = 446
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 122/253 (48%), Gaps = 50/253 (19%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLM--NDTGTLIALDKSKPRVTKL 126
+Q+ S+L LDVQPG +VLD CAAPG K THIA + + G + ALD +V +
Sbjct: 234 MQDESSMLVAPSLDVQPGDQVLDACAAPGGKTTHIAQYLDPDQGGRVTALDLHANKVRLI 293
Query: 127 EETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP 182
++ K+L L + V D+ ++ + ESFD+IL+DAPCSG G ++P
Sbjct: 294 QQNAKRLDLDDRVAAQVMDARQVAAN---------FAAESFDKILVDAPCSGLGLIRRKP 344
Query: 183 MFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVE 242
+ + ++ IQ +L +V P LK G L Y TC++ E
Sbjct: 345 EI----KYTKQPEDLQHLQKIQLAILDSV-----------APTLKIGGRLTYSTCTMVKE 389
Query: 243 ENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPP---LIPTDRNT 299
EN+ V+A L HPE E V P L +K LA + G P L P D +T
Sbjct: 390 ENQDVVAHFLATHPEFEQV---PVLTLKPLA------------KTHGAPALQLFPDDYDT 434
Query: 300 DTIGFFICKLRKK 312
D GFFI L ++
Sbjct: 435 D--GFFIASLIRR 445
>gi|229104427|ref|ZP_04235096.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock3-28]
gi|228679125|gb|EEL33333.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock3-28]
Length = 354
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 120/245 (48%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L LD G+ VLD CAAPG K THIA + TG +++LD +V +++
Sbjct: 142 IQDESSMLVARALDPNEGETVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQ 201
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
++L L +I+T D+ ++ E+FD+IL+DAPCSGFG + +
Sbjct: 202 QAERLGLENIETKALDARKVQEH---------FANETFDKILVDAPCSGFG--VIRRKPD 250
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 251 IKLGKDKGDSERLSTIQLAILEKIA-----------PLLKQGGRLVYSTCTIEKIENEQV 299
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E T+ + + L+ E + Q + F T GF+I
Sbjct: 300 IDKFLKEHPEFEWDTTIKERMPEKLSPYINEGQVQILPHYFA-----------TDGFYIA 348
Query: 308 KLRKK 312
LRKK
Sbjct: 349 CLRKK 353
>gi|160331223|ref|XP_001712319.1| nop2 [Hemiselmis andersenii]
gi|159765766|gb|ABW97994.1| nop2 [Hemiselmis andersenii]
Length = 366
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/250 (33%), Positives = 129/250 (51%), Gaps = 38/250 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
LQ L S + LD Q G+++L++ AAPG K T I+ +M +TG IA DK+K R+ L
Sbjct: 146 LQGLSSFFSVIALDPQKGERILEIAAAPGGKATFISQIMENTGICIANDKNKSRLNSLVS 205
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG-----QRPM 183
TI +L + + +D + + +MK FDR+LLDAPC+G G +R
Sbjct: 206 TIHRLGIENSIVTNFDGSFFHY-------KMK----GFDRVLLDAPCTGTGIISHDERIK 254
Query: 184 FYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEE 243
+ NS + ++ +QK+LL +S D I KK G +VY TCS+ +EE
Sbjct: 255 LHKINSAILIN------TTLQKRLL------ISAIDSCKINQEKK-GYIVYSTCSILIEE 301
Query: 244 NEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVM--QRFGPPLIPTDRNTDT 301
NE++I + + + V++V+T G+ G E ++ + +RF P + D
Sbjct: 302 NESIIQYAVEKR-NVKIVKTGLSFGIPGFVKYKNEIFNKKMHFCRRFYPHIHNVD----- 355
Query: 302 IGFFICKLRK 311
GFF+CKL K
Sbjct: 356 -GFFVCKLEK 364
>gi|423378296|ref|ZP_17355580.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG1O-2]
gi|423441404|ref|ZP_17418310.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG4X2-1]
gi|423464478|ref|ZP_17441246.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG6O-1]
gi|423533820|ref|ZP_17510238.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuB2-9]
gi|423540911|ref|ZP_17517302.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuB4-10]
gi|423547149|ref|ZP_17523507.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuB5-5]
gi|423623059|ref|ZP_17598837.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD148]
gi|401172099|gb|EJQ79320.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuB4-10]
gi|401178870|gb|EJQ86043.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuB5-5]
gi|401259832|gb|EJR66006.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD148]
gi|401636562|gb|EJS54316.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG1O-2]
gi|402418065|gb|EJV50365.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG4X2-1]
gi|402420745|gb|EJV53016.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG6O-1]
gi|402464039|gb|EJV95739.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuB2-9]
Length = 444
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 120/245 (48%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L LD G+ VLD CAAPG K THIA + TG +++LD +V +++
Sbjct: 232 IQDESSMLVARALDPNEGETVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQ 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
++L L +I+T D+ ++ E+FD+IL+DAPCSGFG + +
Sbjct: 292 QAERLGLENIETKALDARKVQEH---------FANETFDKILVDAPCSGFG--VIRRKPD 340
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 341 IKLGKDKGDSERLSTIQLAILEKI-----------APLLKQGGRLVYSTCTIEKIENEQV 389
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E T+ + + L+ E + Q + F T GF+I
Sbjct: 390 IDKFLKEHPEFEWDTTIKERMPEKLSPYINEGQVQILPHYFA-----------TDGFYIA 438
Query: 308 KLRKK 312
LRKK
Sbjct: 439 CLRKK 443
>gi|421768804|ref|ZP_16205514.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
rhamnosus LRHMDP2]
gi|421771044|ref|ZP_16207705.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
rhamnosus LRHMDP3]
gi|411185653|gb|EKS52780.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
rhamnosus LRHMDP2]
gi|411186479|gb|EKS53603.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
rhamnosus LRHMDP3]
Length = 446
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 122/253 (48%), Gaps = 50/253 (19%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLM--NDTGTLIALDKSKPRVTKL 126
+Q+ S+L LDVQPG +VLD CAAPG K THIA + + G + ALD +V +
Sbjct: 234 MQDESSMLVAPSLDVQPGDQVLDACAAPGGKTTHIAQYLDPDQGGRVTALDLHANKVRLI 293
Query: 127 EETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP 182
++ K+L L + V D+ ++ + ESFD+IL+DAPCSG G ++P
Sbjct: 294 QQNAKRLDLDDRVAAQVMDARQVAAN---------FAAESFDKILVDAPCSGLGLIRRKP 344
Query: 183 MFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVE 242
+ + ++ IQ +L +V P LK G L Y TC++ E
Sbjct: 345 EI----KYTKQPEDLQHLQKIQLAILDSV-----------APTLKIGGRLTYSTCTMVKE 389
Query: 243 ENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPP---LIPTDRNT 299
EN+ V+A L HPE E V P L +K LA + G P L P D +T
Sbjct: 390 ENQDVVAHFLATHPEFEQV---PVLTLKPLA------------KTHGAPALQLFPDDYDT 434
Query: 300 DTIGFFICKLRKK 312
D GFFI L ++
Sbjct: 435 D--GFFIASLIRR 445
>gi|66812796|ref|XP_640577.1| NOL1/NOP2/Sun family protein [Dictyostelium discoideum AX4]
gi|60468601|gb|EAL66604.1| NOL1/NOP2/Sun family protein [Dictyostelium discoideum AX4]
Length = 647
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 97/300 (32%), Positives = 140/300 (46%), Gaps = 57/300 (19%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E SQV D+ + I P LAG Y L QP +
Sbjct: 303 LIARGVHLEPIK-WSQVGLTIYDTQVAIGAT-PEYLAGQYIQQSASSFLPVLALAPQPNE 360
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDMCA+PG K T+IA +M +TGTL+A D +K R+ L I +L + +
Sbjct: 361 RVLDMCASPGGKTTYIAAMMKNTGTLVANDVNKDRIKSLVANIHRLGVKNCMV------- 413
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYANIQ 204
S +D + FDR+L+DAPC G G + P + S ++ + + + Q
Sbjct: 414 ----SNLDGRQYPSVLSGFDRVLVDAPCVGLGVISKDPQIKISKS----EQDVITCTHTQ 465
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL 264
K+LL V G GI+VY TCSL+VEENEAV+ + L R+ +V +V T
Sbjct: 466 KELLLKAIDSVDASSPTG-------GIIVYSTCSLTVEENEAVVDYAL-RNRDVIVVDTT 517
Query: 265 PQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRKKYGEAPE 318
+ G+ G RF P L T R N D GF++ KL+K+ P+
Sbjct: 518 IEFGVDGFTS--------FRESRFHPSLALTKRYYPHTHNMD--GFYVAKLKKRSNIIPK 567
>gi|418070840|ref|ZP_12708115.1| 16S rRNA methyltransferase B [Lactobacillus rhamnosus R0011]
gi|423078824|ref|ZP_17067501.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
rhamnosus ATCC 21052]
gi|357540260|gb|EHJ24277.1| 16S rRNA methyltransferase B [Lactobacillus rhamnosus R0011]
gi|357549112|gb|EHJ30960.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
rhamnosus ATCC 21052]
Length = 446
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 122/253 (48%), Gaps = 50/253 (19%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLM--NDTGTLIALDKSKPRVTKL 126
+Q+ S+L LDVQPG +VLD CAAPG K THIA + + G + ALD +V +
Sbjct: 234 MQDESSMLVAPSLDVQPGDQVLDACAAPGGKTTHIAQYLDPDQGGRVTALDLHANKVRLI 293
Query: 127 EETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP 182
++ K+L L + V D+ ++ + ESFD+IL+DAPCSG G ++P
Sbjct: 294 QQNAKRLDLDDRVAAQVMDARQVAAN---------FAAESFDKILVDAPCSGLGLIRRKP 344
Query: 183 MFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVE 242
+ + ++ IQ +L +V P LK G L Y TC++ E
Sbjct: 345 EI----KYTKQPEDLQHLQKIQLAILDSV-----------APTLKIGGRLTYSTCTMVRE 389
Query: 243 ENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPP---LIPTDRNT 299
EN+ V+A L HPE E V P L +K LA + G P L P D +T
Sbjct: 390 ENQDVVAHFLATHPEFEQV---PVLTLKPLA------------KTHGAPALQLFPDDYDT 434
Query: 300 DTIGFFICKLRKK 312
D GFFI L ++
Sbjct: 435 D--GFFIASLIRR 445
>gi|74150573|dbj|BAE32311.1| unnamed protein product [Mus musculus]
Length = 732
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 100/316 (31%), Positives = 144/316 (45%), Gaps = 56/316 (17%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+ V DSS+ I P LAGHY L Q
Sbjct: 310 AQALINRGVNLDPLGKWSKSGLVVYDSSVPIGAT-PEYLAGHYMLQGASSMLPVMALAPQ 368
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDMC APG K ++IA LM +TG ++A D + R+ + + +L +++ YD
Sbjct: 369 EHERILDMCCAPGGKTSYIAQLMKNTGVILANDANADRLKSVVGNLHRLGVTNTIISHYD 428
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANI 203
+ FDR+LLDAPCSG G + + N D+K I+ A++
Sbjct: 429 GRQFPKVVG-----------GFDRVLLDAPCSGTGV--ISKDPAVKTNKDEKDIQRCAHL 475
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
QK+LL + V+ G G LVYCTCS++VEENE V+ + L + V LV T
Sbjct: 476 QKELLLSAIDSVNAASKTG-------GYLVYCTCSITVEENEWVVDYALKKR-NVRLVPT 527
Query: 264 LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRKKYGEAP 317
G +G + +RF P L T R N D GFFI K +K P
Sbjct: 528 GLDFGQEGFT--------RFQARRFHPTLRSTRRFYPHTHNMD--GFFIAKFKKFSNSIP 577
Query: 318 EIYIHPHLNDCIVIGP 333
+ PH + P
Sbjct: 578 Q----PHAGNSAAATP 589
>gi|289579009|ref|YP_003477636.1| RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacter italicus
Ab9]
gi|289528722|gb|ADD03074.1| RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacter italicus
Ab9]
Length = 459
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 81/236 (34%), Positives = 117/236 (49%), Gaps = 29/236 (12%)
Query: 81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQT 140
LD +PG+K+LD+ AAPG K THIA + D G ++A + K R+ L E +++L + +I
Sbjct: 99 LDPKPGEKILDVSAAPGGKTTHIATKIGDEGLIVANEIDKKRIKALVENVERLGIRNIVI 158
Query: 141 HVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY 200
++ T+ + FD+IL+DAPCSG G A +L+ I S
Sbjct: 159 TNETPEKLTTAFE----------GYFDKILVDAPCSGEGMFRKDPTARKIWSLNNVI-SC 207
Query: 201 ANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVEL 260
+ QK +L+ V PLLK GILVY TC+ S EENE VI L +PE ++
Sbjct: 208 SITQKNILRNV-----------APLLKPGGILVYSTCTFSPEENEGVIKKFLEEYPEFKV 256
Query: 261 VQT-LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKKYGE 315
++ + + +G ED R P + + G FI KLRKK GE
Sbjct: 257 EKSEMSKFFDRGYPEWVEGPEDLKKCMRLWPHKVRGE------GHFIAKLRKKEGE 306
>gi|440634815|gb|ELR04734.1| hypothetical protein GMDG_06963 [Geomyces destructans 20631-21]
Length = 699
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 137/290 (47%), Gaps = 49/290 (16%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +S++ L P LAGHY L Q +
Sbjct: 326 LINRGVTLEPVGKWSKVGLQVFESAV-PLGATPEYLAGHYILQAASSFLPVMALAPQENE 384
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM +APG K T+IA LM +TG + A D +K R L I +L + + YD+
Sbjct: 385 RVLDMASAPGGKTTYIAALMKNTGCIFANDSNKARAKGLIGNIHRLGVKNTIVCNYDAR- 443
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY---ANIQ 204
E K+ FDR+LLDAPCSG G + + +K + + ++Q
Sbjct: 444 ---------EFPKVMG-GFDRVLLDAPCSGTG----VIAKDPSVKTNKTERDFLMLPHLQ 489
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL 264
K+LL A V G G +VY TCS++VEENE+V+ + L + P V LV+T
Sbjct: 490 KQLLLAAIDSVDHASKTG-------GFIVYSTCSVTVEENESVVQYALSKRPNVRLVETG 542
Query: 265 PQLGMKGLA---HKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
G +G K+ +A+ + +R+ P D GFF+ K +K
Sbjct: 543 LTFGKEGFTAYMGKNFDAK-MKITRRYYPHAYNVD------GFFVAKFKK 585
>gi|408399720|gb|EKJ78813.1| hypothetical protein FPSE_00956 [Fusarium pseudograminearum CS3096]
Length = 679
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 90/289 (31%), Positives = 132/289 (45%), Gaps = 47/289 (16%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +SS+ L P LAGHY LD Q +
Sbjct: 332 LINRGVTLEPVGKWSKVGLQVFESSV-PLGATPEYLAGHYILQAASSFLPCMALDPQENE 390
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM +APG K T+++ +M +TG ++A D +K R L I +L ++ YD+
Sbjct: 391 RVLDMASAPGGKTTYMSAMMKNTGIVVANDPNKARAKGLIGNIHRLGCRNVIVSNYDARE 450
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYANIQ 204
FDR+LLDAPCSG G + P + L+ ++Q
Sbjct: 451 FPKPMG-----------GFDRVLLDAPCSGTGVIAKDPSVKTNKTELDF----MQLPHLQ 495
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL 264
K+LL A V+ G G +VY TCS++VEENE V+ + L R P V LV
Sbjct: 496 KQLLLAAIDSVNHASKTG-------GYIVYSTCSVTVEENEQVVNYALSRRPNVRLVDAG 548
Query: 265 PQLGMKGLAHKDLEAEDQAV--MQRFGPPLIPTDRNTDTIGFFICKLRK 311
G +G + D +V +RF P + D GF++ K +K
Sbjct: 549 LTFGKEGFTSYMGKKFDPSVSLTRRFYPHSLNVD------GFYVAKFQK 591
>gi|309775876|ref|ZP_07670870.1| NOL1/NOP2/sun family protein [Erysipelotrichaceae bacterium 3_1_53]
gi|308916414|gb|EFP62160.1| NOL1/NOP2/sun family protein [Erysipelotrichaceae bacterium 3_1_53]
Length = 444
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 86/255 (33%), Positives = 124/255 (48%), Gaps = 36/255 (14%)
Query: 59 NVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDK 118
+VA + + +Q + A LDVQ G VLDMCAAPG K T IA + D+G L++ +
Sbjct: 76 HVAHLAGLFYMQEPSASSAVEVLDVQSGDWVLDMCAAPGGKSTQIAAKLKDSGFLVSNEI 135
Query: 119 SKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGF 178
R L +++L S NT Q + M FDR+L+DAPCSG
Sbjct: 136 DSKRAGILLSNMERLGFSRCMI-------TNTRPQQIAKEMG---GWFDRVLVDAPCSGE 185
Query: 179 GQRPMFYNANSFLN--LDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT 236
G MF + + ++ +K+ Q+ +L + Y LKKDGILVY T
Sbjct: 186 G---MFKKHSKAMEDWSEEHVKACGQRQQHILDSAY-----------TALKKDGILVYST 231
Query: 237 CSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTD 296
C+ ++EENE VI L H ++ELV G GL ++ LE E ++R + P D
Sbjct: 232 CTYAMEENEQVIYAFLQSHSDMELVDCGVSFGRSGLPYEKLEHEK---LRR----IFPMD 284
Query: 297 RNTDTIGFFICKLRK 311
+ G F+ KL+K
Sbjct: 285 QGE---GHFVAKLKK 296
>gi|331226503|ref|XP_003325921.1| Yna1p [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
Length = 601
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 85/260 (32%), Positives = 125/260 (48%), Gaps = 54/260 (20%)
Query: 73 PSILAGHY-------------LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKS 119
P LAGHY LD QPG+K LDM AAPG K T ++ +M +TG L A D S
Sbjct: 241 PEYLAGHYMLQAASSFLPVIALDPQPGEKCLDMSAAPGGKTTFMSAMMKNTGKLFANDSS 300
Query: 120 KPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG 179
K R L + ++ ++ +D+ D ++ F+R+LLDAPCSG G
Sbjct: 301 KARCKSLMANVSRMGCHNVIISNHDAR--------DFPKVMG---GFNRVLLDAPCSGTG 349
Query: 180 QRPMFYNANSFLNLDKKIKS---YANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT 236
+ ++ + +K K +++QK+L+ + VS G G LVY T
Sbjct: 350 ----VISKDASVKNNKSEKDLLLLSHLQKQLILSAIDSVSPHSTNG-------GYLVYST 398
Query: 237 CSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTD 296
CS++VEENE+V+ + L + P V+LV+T G +G + + F P L T
Sbjct: 399 CSVTVEENESVVDYALKKRPNVKLVETGIGFGKEGFV--------RFRGKIFNPSLKMTR 450
Query: 297 R------NTDTIGFFICKLR 310
R N D GFF+ KL+
Sbjct: 451 RFYPHVHNVD--GFFVAKLK 468
>gi|228992593|ref|ZP_04152520.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
pseudomycoides DSM 12442]
gi|228998641|ref|ZP_04158228.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides
Rock3-17]
gi|228761109|gb|EEM10068.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides
Rock3-17]
gi|228767227|gb|EEM15863.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
pseudomycoides DSM 12442]
Length = 415
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 81/247 (32%), Positives = 117/247 (47%), Gaps = 38/247 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L + G VLD CAAPG K THIA + TG + +LD +V +++
Sbjct: 203 IQDESSMLVARALKPEEGDMVLDSCAAPGGKTTHIAERLKGTGQVTSLDLHPHKVRLIQQ 262
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
K+L+L +I+T D+ ++ ESFD+IL+DAPCSGFG ++P
Sbjct: 263 QAKRLELENIETKALDARKVQEH---------FANESFDKILVDAPCSGFGVIRRKPDIK 313
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ ++ + IQ +L+ V PLLK G LVY TC++ ENE
Sbjct: 314 LGKEKGDSER----LSTIQLSILEKV-----------APLLKAGGRLVYSTCTIEKIENE 358
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
VI L HPE E T+ + + L E + Q + F T GF+
Sbjct: 359 QVIEQFLQEHPEFEWDTTMKERMPEKLRPYINEGQVQILPHYFA-----------TDGFY 407
Query: 306 ICKLRKK 312
I LRKK
Sbjct: 408 IACLRKK 414
>gi|401565870|ref|ZP_10806681.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
FOBRC6]
gi|400183501|gb|EJO17754.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
FOBRC6]
Length = 448
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 125/271 (46%), Gaps = 47/271 (17%)
Query: 45 GVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIA 104
G+ + L +P L + + +Q+ S+L H L +PG V+D CAAPG K THIA
Sbjct: 220 GIVLHAHGALDDLP--PLRAGLAQVQDESSMLVAHVLGAEPGMTVIDSCAAPGGKTTHIA 277
Query: 105 LLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE 164
M + G ++A D + ++ ++E+ ++L +S I+ + D+ I + +
Sbjct: 278 QRMENRGRILAFDIYEEKIRRIEQNARRLGISIIEAQMRDAREIGAAYE----------G 327
Query: 165 SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIP 224
DR+L+DAPCSG G +A + + K+ IQ+ +L + R V
Sbjct: 328 IADRVLVDAPCSGLGVLRRKPDARWKKSAPDR-KTLPPIQRAILASAARAV--------- 377
Query: 225 LLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT---LPQLGMKGLAHKDLEAED 281
K G+LVY TC++ EN AV+ L HP L QT LP+
Sbjct: 378 --KAGGVLVYSTCTMEECENAAVVQDFLRAHPHFTLEQTGAFLPE--------------- 420
Query: 282 QAVMQRFGPPLIPTDRNTDTI-GFFICKLRK 311
Q+ P++ TD GFFI ++R+
Sbjct: 421 ----QKIAEPMVQIMPETDGADGFFIARMRR 447
>gi|85691089|ref|XP_965944.1| nucleolar protein [Encephalitozoon cuniculi GB-M1]
Length = 370
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 77/249 (30%), Positives = 122/249 (48%), Gaps = 37/249 (14%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
LQ S+L +D++ G V+D+CAAPG K THIA LM +TG + A D ++ R+ L+
Sbjct: 155 LQGAASMLPVLNMDLKEGLTVVDLCAAPGGKTTHIAALMENTGVIYANDVNEERIAGLKS 214
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
I+++ + + D ++N DR+LLDAPCSG G + P
Sbjct: 215 NIQRMGVRNCIVMNMDGRKVNVG-------------RVDRVLLDAPCSGTGVISKDPSVK 261
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ + +D+ + +QK+L+ G +LK GIL+Y TCS+ V+ENE
Sbjct: 262 TSRTRSEIDRMV----TLQKELI-----------LHGFGMLKPGGILMYSTCSVLVKENE 306
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKG-LAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
V+ ++L + P ++ + +G G ++ K M R + P N D GF
Sbjct: 307 EVVNYLLSKCPSAKMAECEIDIGKDGFMSFKGKNYNGSLKMAR---RIYPHVHNMD--GF 361
Query: 305 FICKLRKKY 313
F K+ KKY
Sbjct: 362 FYAKILKKY 370
>gi|66475704|ref|XP_627668.1| Nop2p family of SUN/fmu RNA methylase [Cryptosporidium parvum Iowa
II]
gi|32398900|emb|CAD98365.1| nucleolar protein-like, probable [Cryptosporidium parvum]
gi|46229100|gb|EAK89949.1| Nop2p family of SUN/fmu RNA methylase [Cryptosporidium parvum Iowa
II]
gi|323508963|dbj|BAJ77374.1| cgd6_3230 [Cryptosporidium parvum]
Length = 542
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 97/299 (32%), Positives = 142/299 (47%), Gaps = 47/299 (15%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RG V+ T ++V SS+ I P LAGHY L Q
Sbjct: 175 AQKLISRGANVDPTGEWTKVGLTIYSSSVPIGAT-PEYLAGHYMIQSASSLIPVMALAPQ 233
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
PG+K+LDM AAPG K T+I LM ++G L A D K R T L + ++
Sbjct: 234 PGEKILDMAAAPGGKTTYIGQLMKNSGILYANDLRKDRCTGLIANLHRMG---------- 283
Query: 145 STRINTSSQIDIERMKLQK--ESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKS 199
IN S ++++ +L DR+LLDAPC+G G + P S K++
Sbjct: 284 ---INNSIVVNMDGKELGSFLPKLDRVLLDAPCTGLGIIARDPSVKVKRSI----KELAQ 336
Query: 200 YANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVE 259
++ +QK+LL+A V G G +VY TCS+S+EENE VI +IL R V+
Sbjct: 337 HSLLQKELLKAAVDMVDANSKTG-------GYIVYSTCSISIEENEMVIDYIL-RTRHVK 388
Query: 260 LVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKKYGEAPE 318
LV ++G G++ K E + + + P N D GFF+ KL+K + P+
Sbjct: 389 LVPLGVEIGSNGIS-KFREHRFNPTISTYTRRIYPHLNNMD--GFFVAKLKKISNDIPK 444
>gi|336367055|gb|EGN95400.1| hypothetical protein SERLA73DRAFT_112877 [Serpula lacrymans var.
lacrymans S7.3]
Length = 450
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 91/295 (30%), Positives = 138/295 (46%), Gaps = 55/295 (18%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV +E + V +S + I P LAGHY L Q
Sbjct: 118 AQTLVNRGVTLEPIGKWTNVGLQVFESGVPIGAT-PEYLAGHYMLQAASSFLPVIALAPQ 176
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
P +++LDM +APG K THIA L+ +TG + A D ++ R L + +L ++ YD
Sbjct: 177 PNERILDMASAPGGKTTHIAALLQNTGVVFANDANQARTKSLTANVHRLGCKNVIVCSYD 236
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY---A 201
+ R+ FDR+LLDAPCSG G + +S + ++K + + A
Sbjct: 237 GR--------EFPRV---IGGFDRVLLDAPCSGTG----VISKDSSVKVNKSERDFHLLA 281
Query: 202 NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
++QK+L+ VS P K G LVY TCS++V+ENEAV+ + L + V+LV
Sbjct: 282 HLQKQLILCAIDSVS-------PDSKTGGYLVYSTCSVTVDENEAVVDYALRKRSNVKLV 334
Query: 262 QTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLR 310
T + G +G + + F P L T R N D GF++ K +
Sbjct: 335 DTGLEFGREGFT--------RFRGKIFNPSLNLTRRFYPHVHNMD--GFYVAKFK 379
>gi|308456988|ref|XP_003090900.1| CRE-NOL-1 protein [Caenorhabditis remanei]
gi|308260037|gb|EFP03990.1| CRE-NOL-1 protein [Caenorhabditis remanei]
Length = 677
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 96/295 (32%), Positives = 143/295 (48%), Gaps = 53/295 (17%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A +++ RG+ V+ ++V V DS + + P LAGHY L Q
Sbjct: 257 ARNLINRGMNVDPAADWTKVGLVVYDSQVPVGAT-PEYLAGHYMIQGLNSLLPVMALAPQ 315
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
PG +VLDMC+APG K +HIA LM ++GTL A D S R + + +L V +
Sbjct: 316 PGDRVLDMCSAPGGKTSHIAALMKNSGTLFANDASFDRCRAIIGNLHRL-------GVNN 368
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANI 203
+ N + E K++ FDRILLDAPCSG G ++ + + + D + ++ +
Sbjct: 369 AVVCNLGGE---EFAKIRPNGFDRILLDAPCSGTGV--IWKDQSVKTSKDSQDVQRRHTV 423
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
Q++L+ + + G G LVY TCS+ VEENEAV+ ++L R ELV T
Sbjct: 424 QRQLILSALDSLDANSPNG-------GYLVYSTCSVLVEENEAVVNFLLERR-HCELVPT 475
Query: 264 LPQLGMKGLAH-KDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
+G+ G +D RF P L T R N D GF++ K++K
Sbjct: 476 GLSIGVDGYTRFRDY---------RFHPSLSMTKRYYPHVHNID--GFYVAKIKK 519
>gi|449329777|gb|AGE96046.1| nucleolar protein [Encephalitozoon cuniculi]
Length = 370
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 77/249 (30%), Positives = 122/249 (48%), Gaps = 37/249 (14%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
LQ S+L +D++ G V+D+CAAPG K THIA LM +TG + A D ++ R+ L+
Sbjct: 155 LQGAASMLPVLNMDLKEGLTVVDLCAAPGGKTTHIAALMENTGVIYANDVNEERIAGLKS 214
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
I+++ + + D ++N DR+LLDAPCSG G + P
Sbjct: 215 NIQRMGVRNCIVMNMDGRKVNVG-------------RVDRVLLDAPCSGTGVISKDPSVK 261
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ + +D+ + +QK+L+ G +LK GIL+Y TCS+ V+ENE
Sbjct: 262 TSRTRSEIDRMV----TLQKELI-----------LHGFGMLKPGGILMYSTCSVLVKENE 306
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKG-LAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
V+ ++L + P ++ + +G G ++ K M R + P N D GF
Sbjct: 307 EVVNYLLSKCPSAKIAECEIDIGKDGFMSFKGKNYNGSLKMAR---RIYPHVHNMD--GF 361
Query: 305 FICKLRKKY 313
F K+ KKY
Sbjct: 362 FYAKILKKY 370
>gi|229006142|ref|ZP_04163829.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides
Rock1-4]
gi|228755095|gb|EEM04453.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides
Rock1-4]
Length = 415
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 81/247 (32%), Positives = 117/247 (47%), Gaps = 38/247 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L + G VLD CAAPG K THIA + TG + +LD +V +++
Sbjct: 203 IQDESSMLVARALKPEEGDMVLDSCAAPGGKTTHIAERLKGTGQVTSLDLHPHKVRLIQQ 262
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
K+L+L +I+T D+ ++ ESFD+IL+DAPCSGFG ++P
Sbjct: 263 QAKRLELENIETKALDARKVQEH---------FANESFDKILVDAPCSGFGVIRRKPDIK 313
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ ++ + IQ +L+ V PLLK G LVY TC++ ENE
Sbjct: 314 LGKEKGDSER----LSTIQLSILEKV-----------APLLKAGGRLVYSTCTIEKIENE 358
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
VI L HPE E T+ + + L E + Q + F T GF+
Sbjct: 359 QVIEQFLQEHPEFEWDTTMKERMPEKLRPYINEGQVQILPHYFA-----------TDGFY 407
Query: 306 ICKLRKK 312
I LRKK
Sbjct: 408 IACLRKK 414
>gi|401825209|ref|XP_003886700.1| tRNA/rRNA cytosine-C5-methylase [Encephalitozoon hellem ATCC 50504]
gi|395459845|gb|AFM97719.1| tRNA/rRNA cytosine-C5-methylase [Encephalitozoon hellem ATCC 50504]
Length = 305
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 88/290 (30%), Positives = 138/290 (47%), Gaps = 54/290 (18%)
Query: 42 LFRGVAVEITNVLSQVPN--VALDSSMGILQNLPSILAGHY-------------LDVQPG 86
L RG V++ + LS + + V SS+ I P LAG+Y ++++ G
Sbjct: 51 LLRGRGVDLDD-LSWIDSGCVIFKSSVPIGAT-PEYLAGYYCLQGAASMLPVLNMELKEG 108
Query: 87 QKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDST 146
V+D+CAAPG K THIA LM +TG + A D ++ R+ L+ I+++ + + D
Sbjct: 109 LSVVDLCAAPGGKTTHIAALMENTGVIYANDVNEERIAGLKSNIQRMGVRNCIVMNMDGR 168
Query: 147 RINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYANI 203
++N DR+LLDAPCSG G + P + + +D+ A +
Sbjct: 169 KVNVG-------------KVDRVLLDAPCSGTGVISKDPSVKTSRTKSEIDR----MATL 211
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
QK+L+ G +L+ GILVY TCS+ V+ENE V+ ++L + P ++ Q
Sbjct: 212 QKELI-----------LHGFDMLRPGGILVYSTCSVLVKENEEVVNYLLTKRPSAKMAQC 260
Query: 264 LPQLGMKG-LAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKK 312
+G G ++ K M R + P N D GFF K+ KK
Sbjct: 261 EVDIGKDGFMSFKGRNYNGSLKMAR---RIYPHVHNMD--GFFYAKIVKK 305
>gi|320581196|gb|EFW95417.1| RNA m(5)C methyltransferase, putative [Ogataea parapolymorpha DL-1]
Length = 608
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 85/259 (32%), Positives = 121/259 (46%), Gaps = 50/259 (19%)
Query: 73 PSILAGHY-------------LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKS 119
P LAGHY LD Q +++LDM AAPG K T+I+ LM +TG + A D +
Sbjct: 307 PEYLAGHYILQAASSFLPVMALDPQENERILDMAAAPGGKTTYISALMKNTGCVFANDAN 366
Query: 120 KPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG 179
K R L I +L ++ YD+ FDR+LLDAPCSG G
Sbjct: 367 KARTKSLIANIHRLGCTNTVVCNYDAREFPKVIG-----------GFDRVLLDAPCSGTG 415
Query: 180 QRPMFYNANSFLN-LDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS 238
+ + N +N +K ++QK+LL + V G G++VY TCS
Sbjct: 416 V--IAKDQNVKVNRTEKDFIQIPHLQKQLLLSAIDSVDAHSATG-------GVIVYSTCS 466
Query: 239 LSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR- 297
++VEENEAV+ + L + P V+LV+T +G G ++F P + T R
Sbjct: 467 VAVEENEAVVDYALRKRPNVKLVETGLAIGKPGFT--------SYRGKQFNPKVSLTRRY 518
Query: 298 -----NTDTIGFFICKLRK 311
N D GFF+ K +K
Sbjct: 519 YPHAYNVD--GFFVAKFQK 535
>gi|443328422|ref|ZP_21057020.1| ribosomal RNA small subunit methyltransferase RsmB [Xenococcus sp.
PCC 7305]
gi|442792007|gb|ELS01496.1| ribosomal RNA small subunit methyltransferase RsmB [Xenococcus sp.
PCC 7305]
Length = 480
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 121/247 (48%), Gaps = 43/247 (17%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ + L H+LD QPG+ ++D CAAPG K THIA L+ D GT+ A D+SK R+ K+
Sbjct: 266 VQDGSAQLVTHFLDPQPGESIIDACAAPGGKTTHIAELLGDRGTIWACDRSKKRLQKVRA 325
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
+LQL+SIQ +R ID+ R DR+LLD PCSG G +RP
Sbjct: 326 NAARLQLNSIQIQPAGDSR----DLIDLPRQ------CDRLLLDVPCSGLGTLHKRPDI- 374
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ +KI + +Q++LL A V K G+LVY TCS++ +ENE
Sbjct: 375 ---RWRQTPEKILQLSLLQQELLSAAATRV-----------KPQGVLVYATCSINSQENE 420
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEA-EDQAVMQRFGPPLIPTDRNTDTIGF 304
V+ L HP +A D E+ + M R + P N D GF
Sbjct: 421 KVVESFLGSHPNWS------------IAVPDTESIVNNFDMARGWVKVYPHRYNMD--GF 466
Query: 305 FICKLRK 311
F+ K RK
Sbjct: 467 FLVKFRK 473
>gi|46123731|ref|XP_386419.1| hypothetical protein FG06243.1 [Gibberella zeae PH-1]
Length = 678
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 90/289 (31%), Positives = 132/289 (45%), Gaps = 47/289 (16%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +SS+ L P LAGHY LD Q +
Sbjct: 331 LINRGVTLEPVGKWSKVGLQVFESSV-PLGATPEYLAGHYILQAASSFLPCMALDPQENE 389
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM +APG K T+++ +M +TG ++A D +K R L I +L ++ YD+
Sbjct: 390 RVLDMASAPGGKTTYMSAMMKNTGIVVANDPNKARAKGLIGNIHRLGCRNVIVSNYDARE 449
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYANIQ 204
FDR+LLDAPCSG G + P + L+ ++Q
Sbjct: 450 FPKPMG-----------GFDRVLLDAPCSGTGVIAKDPSVKTNKTELDF----MQLPHLQ 494
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL 264
K+LL A V+ G G +VY TCS++VEENE V+ + L R P V LV
Sbjct: 495 KQLLLAAIDSVNHASKTG-------GYIVYSTCSVTVEENEQVVNYALSRRPNVRLVDAG 547
Query: 265 PQLGMKGLAHKDLEAEDQAV--MQRFGPPLIPTDRNTDTIGFFICKLRK 311
G +G + D +V +RF P + D GF++ K +K
Sbjct: 548 LTFGKEGFTSYMGKKFDPSVSLTRRFYPHSLNVD------GFYVAKFQK 590
>gi|302392192|ref|YP_003828012.1| sun protein [Acetohalobium arabaticum DSM 5501]
gi|302204269|gb|ADL12947.1| sun protein [Acetohalobium arabaticum DSM 5501]
Length = 448
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 86/270 (31%), Positives = 133/270 (49%), Gaps = 42/270 (15%)
Query: 47 AVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALL 106
A +TN S + + + +Q L SI+AGH ++ QP VLD+C+APG K TH+A L
Sbjct: 216 AFRVTNSSSLFQSNSFTAGYFQIQGLASIIAGHIMNPQPKDIVLDLCSAPGGKTTHLAEL 275
Query: 107 MNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESF 166
M + G ++A D + ++ +E +L + ++T D +K +K+ F
Sbjct: 276 MANQGEIVANDLHEDKLELIERNCNRLGIRIVRTRAGDG-----------RSLKFEKK-F 323
Query: 167 DRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGI 223
DRIL+DAPCSG G ++P + + I S A +Q +LL RF
Sbjct: 324 DRILVDAPCSGLGMIAKKPEI----KWQKKPQDIDSLAELQLELLNNAGRF--------- 370
Query: 224 PLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKD-LEAEDQ 282
LK G LVY TC+++ +EN VI L ++ + ELV G++ + LE Q
Sbjct: 371 --LKPKGELVYSTCTITHQENLEVINKFLAQNSDFELVDLSSWADKLGISSEFILEGSIQ 428
Query: 283 AVMQRFGPPLIPTDRNTDTIGFFICKLRKK 312
L+PT + + GFFI KL+K+
Sbjct: 429 ---------LLPTWQTNE--GFFIAKLKKR 447
>gi|81879892|sp|Q922K7.1|NOP2_MOUSE RecName: Full=Putative ribosomal RNA methyltransferase NOP2;
AltName: Full=Nucleolar protein 1; AltName:
Full=Nucleolar protein 2 homolog; AltName:
Full=Proliferating-cell nucleolar antigen p120; AltName:
Full=Proliferation-associated nucleolar protein p120
gi|13938070|gb|AAH07151.1| NOP2 nucleolar protein homolog (yeast) [Mus musculus]
Length = 793
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 99/313 (31%), Positives = 143/313 (45%), Gaps = 56/313 (17%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV ++ S+ V DSS+ I P LAGHY L Q +
Sbjct: 313 LINRGVNLDPLGKWSKSGLVVYDSSVPIGAT-PEYLAGHYMLQGASSMLPVMALAPQEHE 371
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
++LDMC APG K ++IA LM +TG ++A D + R+ + + +L +++ YD +
Sbjct: 372 RILDMCCAPGGKTSYIAQLMKNTGVILANDANADRLKSVVGNLHRLGVTNTIISHYDGRQ 431
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANIQKK 206
FDR+LLDAPCSG G + + N D+K I+ A++QK+
Sbjct: 432 FPKVVG-----------GFDRVLLDAPCSGTGV--ISKDPAVKTNKDEKDIQRCAHLQKE 478
Query: 207 LLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQ 266
LL + V+ G G LVYCTCS++VEENE V+ + L + V LV T
Sbjct: 479 LLLSAIDSVNAASKTG-------GYLVYCTCSITVEENEWVVDYALKKR-NVRLVPTGLD 530
Query: 267 LGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRKKYGEAPEIY 320
G +G + +RF P L T R N D GFFI K +K P+
Sbjct: 531 FGQEGFT--------RFQARRFHPTLRSTRRFYPHTHNMD--GFFIAKFKKFSNSIPQ-- 578
Query: 321 IHPHLNDCIVIGP 333
PH + P
Sbjct: 579 --PHAGNSAAATP 589
>gi|336379782|gb|EGO20936.1| hypothetical protein SERLADRAFT_475366 [Serpula lacrymans var.
lacrymans S7.9]
Length = 491
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 91/295 (30%), Positives = 138/295 (46%), Gaps = 55/295 (18%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV +E + V +S + I P LAGHY L Q
Sbjct: 159 AQTLVNRGVTLEPIGKWTNVGLQVFESGVPIGAT-PEYLAGHYMLQAASSFLPVIALAPQ 217
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
P +++LDM +APG K THIA L+ +TG + A D ++ R L + +L ++ YD
Sbjct: 218 PNERILDMASAPGGKTTHIAALLQNTGVVFANDANQARTKSLTANVHRLGCKNVIVCSYD 277
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY---A 201
+ R+ FDR+LLDAPCSG G + +S + ++K + + A
Sbjct: 278 GR--------EFPRV---IGGFDRVLLDAPCSGTG----VISKDSSVKVNKSERDFHLLA 322
Query: 202 NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
++QK+L+ VS P K G LVY TCS++V+ENEAV+ + L + V+LV
Sbjct: 323 HLQKQLILCAIDSVS-------PDSKTGGYLVYSTCSVTVDENEAVVDYALRKRSNVKLV 375
Query: 262 QTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLR 310
T + G +G + + F P L T R N D GF++ K +
Sbjct: 376 DTGLEFGREGFT--------RFRGKIFNPSLNLTRRFYPHVHNMD--GFYVAKFK 420
>gi|158966689|ref|NP_620086.2| putative ribosomal RNA methyltransferase NOP2 [Mus musculus]
Length = 794
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 100/316 (31%), Positives = 144/316 (45%), Gaps = 56/316 (17%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+ V DSS+ I P LAGHY L Q
Sbjct: 310 AQALINRGVNLDPLGKWSKSGLVVYDSSVPIGAT-PEYLAGHYMLQGASSMLPVMALAPQ 368
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDMC APG K ++IA LM +TG ++A D + R+ + + +L +++ YD
Sbjct: 369 EHERILDMCCAPGGKTSYIAQLMKNTGVILANDANADRLKSVVGNLHRLGVTNTIISHYD 428
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANI 203
+ FDR+LLDAPCSG G + + N D+K I+ A++
Sbjct: 429 GRQFPKVVG-----------GFDRVLLDAPCSGTGV--ISKDPAVKTNKDEKDIQRCAHL 475
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
QK+LL + V+ G G LVYCTCS++VEENE V+ + L + V LV T
Sbjct: 476 QKELLLSAIDSVNAASKTG-------GYLVYCTCSITVEENEWVVDYALKKR-NVRLVPT 527
Query: 264 LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRKKYGEAP 317
G +G + +RF P L T R N D GFFI K +K P
Sbjct: 528 GLDFGQEGFT--------RFQARRFHPTLRSTRRFYPHTHNMD--GFFIAKFKKFSNSIP 577
Query: 318 EIYIHPHLNDCIVIGP 333
+ PH + P
Sbjct: 578 Q----PHAGNSAAATP 589
>gi|374324700|ref|YP_005077829.1| ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Paenibacillus
terrae HPL-003]
gi|357203709|gb|AET61606.1| ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Paenibacillus
terrae HPL-003]
Length = 471
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 119/248 (47%), Gaps = 42/248 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L + +P VLD CAAPG K H+A LM D G +IA D + ++E
Sbjct: 259 VQDESSMLVAEAVAPEPDMLVLDCCAAPGGKTAHMAELMKDQGRIIANDLHAHKHRLIQE 318
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
+L L +++T D+ + + SFDR+LLDAPCSGFG ++P
Sbjct: 319 QADRLGLDAVETVTGDALELKN---------RYAPASFDRVLLDAPCSGFGVIRRKPDL- 368
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ + ++ +Q +LL +V LLK GILVY TC++ +ENE
Sbjct: 369 ---RWSKTPQDVRDITQLQHELLDSV-----------AELLKPGGILVYSTCTIEPDENE 414
Query: 246 AVIAWILHRHPEVELVQ--TLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIG 303
I L HPE EL + + P + G+ H QR L+P ++D G
Sbjct: 415 GQITRFLGEHPEYELAEGHSFPDV-TDGMDHA----------QRGSIQLLPQHFHSD--G 461
Query: 304 FFICKLRK 311
F+I +LR+
Sbjct: 462 FYIARLRR 469
>gi|427405969|ref|ZP_18896174.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
F0473]
gi|425708810|gb|EKU71849.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
F0473]
Length = 451
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 101/195 (51%), Gaps = 22/195 (11%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L H L PG V+D CAAPG K THIA LM + G + A D + +++++E
Sbjct: 245 VQDESSMLVAHVLGAAPGMTVIDACAAPGGKATHIAQLMENRGHIRAFDIYEGKISRIEN 304
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
K+L + I+T V D+ I + DR+L+DAPCSGFG +A
Sbjct: 305 NAKRLGIDIIETAVRDAREIGVRFA----------GTADRVLVDAPCSGFGVLRRKPDAR 354
Query: 189 SFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVI 248
+ ++K+ +Q+++L++ V K G LVY TC++ +EN+ V+
Sbjct: 355 -WRRKRAELKNLPKLQREILESAAAAV-----------KPGGALVYSTCTMEEKENDRVV 402
Query: 249 AWILHRHPEVELVQT 263
A L HPE L +T
Sbjct: 403 AHFLEAHPEFTLAET 417
>gi|423452834|ref|ZP_17429687.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG5X1-1]
gi|401139393|gb|EJQ46955.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG5X1-1]
Length = 444
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 117/245 (47%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G VLD CAAPG K THIA ++ TG +++LD +V +E+
Sbjct: 232 IQDESSMLVARALEPNKGDAVLDSCAAPGGKTTHIAERLDGTGKVMSLDLHVHKVRLIEQ 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
K+L L +++T D+ ++ ESFD+IL+DAPCSGFG + +
Sbjct: 292 QAKRLGLENVETMALDARKVQEH---------FANESFDKILVDAPCSGFG--VIRRKPD 340
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 341 IKLGKDKGDSERLSTIQLAILEKI-----------APLLKQGGRLVYSTCTIEKIENEQV 389
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E T+ K + L R P TD GF+I
Sbjct: 390 IKQFLQEHPEFEWDTTI-----KDRMPEKLNPYIDEGQVRILPHYFATD------GFYIA 438
Query: 308 KLRKK 312
LRKK
Sbjct: 439 CLRKK 443
>gi|260887300|ref|ZP_05898563.1| ribosomal RNA small subunit methyltransferase B [Selenomonas
sputigena ATCC 35185]
gi|330838946|ref|YP_004413526.1| sun protein [Selenomonas sputigena ATCC 35185]
gi|260862936|gb|EEX77436.1| ribosomal RNA small subunit methyltransferase B [Selenomonas
sputigena ATCC 35185]
gi|329746710|gb|AEC00067.1| sun protein [Selenomonas sputigena ATCC 35185]
Length = 443
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 119/244 (48%), Gaps = 37/244 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L H L +PG+ VLD+C+APG K THIA M D G ++ALD + ++ ++ E
Sbjct: 237 VQDESSMLVAHVLAPEPGEFVLDVCSAPGGKTTHIAASMGDCGRIVALDVHEHKMRRIAE 296
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
++L + S++ + D+ R Q DR+L+DAPCSG G +A
Sbjct: 297 NCERLGIKSVEPLLLDAREAG-------RRFPRQA---DRVLVDAPCSGLGVLRRKPDAR 346
Query: 189 SFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVI 248
D + + A +Q+++L + V K G+LVY TC++ EENEAV+
Sbjct: 347 WRKRPD-DLAALARLQREILSSAAEAV-----------KSGGVLVYSTCTIEREENEAVV 394
Query: 249 AWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICK 308
L RH E L L +K + L+ L P TD GFFI +
Sbjct: 395 EDFLARHEEFSLENAGELLPLKKRPEQMLQ-------------LYPQRDGTD--GFFIAR 439
Query: 309 LRKK 312
+R++
Sbjct: 440 MRRR 443
>gi|398394152|ref|XP_003850535.1| hypothetical protein MYCGRDRAFT_74360, partial [Zymoseptoria
tritici IPO323]
gi|339470413|gb|EGP85511.1| hypothetical protein MYCGRDRAFT_74360 [Zymoseptoria tritici IPO323]
Length = 658
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 101/309 (32%), Positives = 140/309 (45%), Gaps = 62/309 (20%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V + + S L P LAGHY L Q +
Sbjct: 313 LINRGVTLEPVGKWSKV-GLQIFESQVPLGATPEYLAGHYILQAASSFLPVMALAPQEHE 371
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM AAPG K TH+A LM +TG + + D +K R L I +L + + Y +
Sbjct: 372 RVLDMAAAPGGKTTHLAALMRNTGCIFSNDSNKDRAKGLIGNIHRLGVKNTVVCNYSA-- 429
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANS---FLNLDKKIKSYA 201
+E K+ FDR+LLDAPCSG G + P + FL L
Sbjct: 430 --------LEFPKVMG-GFDRVLLDAPCSGTGVIAKDPSVKTNKTEADFLRL-------P 473
Query: 202 NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
++QK+LL A V G G +VY TCS++VEENE V+ ++L++ P V+LV
Sbjct: 474 HLQKQLLLAAVDSVDHASKTG-------GYIVYSTCSVTVEENEQVVQYVLNKRPNVKLV 526
Query: 262 QTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRKKYGE 315
T G +G + +RF P + T R N D GFF+ K KK G
Sbjct: 527 PTGLIFGKEGFT--------KYQSKRFHPSMKETRRYYPHAYNVD--GFFVSKF-KKTGP 575
Query: 316 APEIYIHPH 324
P I P
Sbjct: 576 TPANAILPQ 584
>gi|300861499|ref|ZP_07107583.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TUSoD Ef11]
gi|422740058|ref|ZP_16795215.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX2141]
gi|428768232|ref|YP_007154343.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis str. Symbioflor 1]
gi|295114431|emb|CBL33068.1| ribosomal RNA small subunit methyltransferase RsmB [Enterococcus
sp. 7L76]
gi|300848960|gb|EFK76713.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TUSoD Ef11]
gi|315144147|gb|EFT88163.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX2141]
gi|427186405|emb|CCO73629.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis str. Symbioflor 1]
Length = 459
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 129/252 (51%), Gaps = 50/252 (19%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDT--GTLIALDKSKPRVTKL 126
+Q+ S+L + ++P VLD CAAPG K THIA + G + +LD ++ +
Sbjct: 242 IQDESSMLVAPAMQIEPHHCVLDACAAPGGKTTHIATFLEAEAGGRVTSLDIHAHKIKLI 301
Query: 127 EETIKKLQLSSI-QTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP 182
E ++L ++ + Q D+ ++ + E+FDRIL+DAPCSG G ++P
Sbjct: 302 NENAQRLHVADVVQAEKLDARQVAE---------EFPAETFDRILVDAPCSGLGLMRRKP 352
Query: 183 ---MFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSL 239
AN F NL K IQ ++L++V P LK+ GI+VY TC++
Sbjct: 353 DIKYHKTANDFQNLPK-------IQLEILESV-----------APTLKQWGIMVYSTCTI 394
Query: 240 SVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNT 299
+ EEN+ V+A L +HPE E ++ +A++++ QAV++ L P T
Sbjct: 395 TPEENQEVVAAFLAKHPEFEKIEI--------VANENV----QAVVKEQELVLYPHQYMT 442
Query: 300 DTIGFFICKLRK 311
D GFFIC +RK
Sbjct: 443 D--GFFICCMRK 452
>gi|390453286|ref|ZP_10238814.1| ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Paenibacillus
peoriae KCTC 3763]
Length = 471
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 84/268 (31%), Positives = 130/268 (48%), Gaps = 46/268 (17%)
Query: 53 VLSQVPNVALDS--SMGIL--QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMN 108
V+ N+AL S + G+L Q+ S+L + +PG VLD CAAPG K H+A LM
Sbjct: 239 VVRSGGNMALTSWYTDGLLSVQDESSMLVAEAVAPEPGMLVLDCCAAPGGKTAHMAELMK 298
Query: 109 DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDR 168
D G +IA D + ++E +L L +++T D+ + + SFDR
Sbjct: 299 DQGRIIANDLHAHKHHLIQEQADRLGLEAVETVTGDALELKD---------RYAPASFDR 349
Query: 169 ILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPL 225
ILLDAPCSGFG ++P + ++ ++ +Q +LL +V L
Sbjct: 350 ILLDAPCSGFGVIRRKPDL----RWSKTEQDVRDITQLQHELLDSV-----------AGL 394
Query: 226 LKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQ--TLPQLGMKGLAHKDLEAEDQA 283
LK GILVY TC++ +ENE + L H E EL + + P + +D +
Sbjct: 395 LKPGGILVYSTCTIEPDENEGQLTRFLGEHSEYELAEGHSFPDMS------RDTKGAQSG 448
Query: 284 VMQRFGPPLIPTDRNTDTIGFFICKLRK 311
+Q L+P ++D GF+I +LR+
Sbjct: 449 SLQ-----LLPQHFHSD--GFYIARLRR 469
>gi|18310723|ref|NP_562657.1| RNA-binding Sun protein [Clostridium perfringens str. 13]
gi|18145404|dbj|BAB81447.1| probable RNA-binding Sun protein [Clostridium perfringens str. 13]
Length = 442
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 126/247 (51%), Gaps = 42/247 (17%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ ++L D++ ++V+D+C+APG K THI LM + G ++A D ++ ++E
Sbjct: 232 VQDESAMLVAPLFDLKGDEQVMDLCSAPGTKATHIGELMMNKGKVVAFDIHDHKLALIKE 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
I +L L++++ + D+T+IN S I+ DRILLD PCSG G ++P
Sbjct: 292 NIDRLGLTNVEVELGDATKIN-SKYINWA---------DRILLDVPCSGLGIIRKKPEIK 341
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+L + +K +QK++L+ + + L++ G LVY TC+L+ +ENE
Sbjct: 342 WNKKNNDLTEVVK----VQKEILKNAWNY-----------LREGGELVYSTCTLNKKENE 386
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
VI W + R+ + E+ + L D V G I ++ D GFF
Sbjct: 387 EVIDWFVERNSDCEVEKVF------------LGKADNVVYNDNGSVTILPNKYMD--GFF 432
Query: 306 ICKLRKK 312
I KL+KK
Sbjct: 433 IAKLKKK 439
>gi|110803437|ref|YP_699027.1| sun protein [Clostridium perfringens SM101]
gi|110683938|gb|ABG87308.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens SM101]
Length = 442
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 138/275 (50%), Gaps = 50/275 (18%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKL 100
I+ +G A+E N L Q + +Q+ ++L D++ ++V+D+C+APG K
Sbjct: 212 IIKKGSAIE-KNKLYQ-------EGLITVQDESAMLVAPLFDLKDDEQVMDLCSAPGTKA 263
Query: 101 THIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMK 160
THI LM + G ++A D ++T ++E I +L L++++ + D+T+IN S I+
Sbjct: 264 THIGELMMNKGKVVAFDIHDHKLTLIKENIDRLGLTNVEVELGDATKIN-SKYINWA--- 319
Query: 161 LQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSL 217
DR+LLD PCSG G ++P +L + +K +QK++L+ + +
Sbjct: 320 ------DRVLLDVPCSGLGIIRKKPEIKWNKKNNDLTEVVK----VQKEILKNAWNY--- 366
Query: 218 FDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDL 277
L++ G LVY TC+L+ +ENE VI W + ++ + E+ + L
Sbjct: 367 --------LREGGELVYSTCTLNKKENEEVIDWFVEKNSDCEVEKVF------------L 406
Query: 278 EAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKK 312
D V G I ++ D GFFI KL+KK
Sbjct: 407 GKADNVVYNDNGSVTILPNKYMD--GFFIAKLKKK 439
>gi|430750393|ref|YP_007213301.1| ribosomal RNA small subunit methyltransferase RsmB [Thermobacillus
composti KWC4]
gi|430734358|gb|AGA58303.1| ribosomal RNA small subunit methyltransferase RsmB [Thermobacillus
composti KWC4]
Length = 459
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 118/249 (47%), Gaps = 34/249 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ ++L D +PG +VLD CAAPG K TH+A LM D G ++A D + + E
Sbjct: 241 VQDEAAMLVAEACDPEPGMRVLDCCAAPGGKSTHLAELMGDVGVVLANDIHPHKERLIVE 300
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
++L L+S++T V D+ + ++ ES D +LLDAPCSGFG ++P
Sbjct: 301 QAQRLGLTSVRTSVCDAAELP---------RRVGAESMDIVLLDAPCSGFGVIRRKPEI- 350
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ + I A +Q +LL A L+K G+LVY TC+ ENE
Sbjct: 351 ---RWTKKPEDIDEIAAVQHRLLAAAS-----------ALVKPGGLLVYSTCTFEPRENE 396
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKG-LAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
IA L H E PQ + G LA E + P + TD GF
Sbjct: 397 EQIAKFLASHSEFAPDCVWPQSILDGFLAAGIPEPSPETGSVTLLPHMAGTD------GF 450
Query: 305 FICKLRKKY 313
FI +LRK++
Sbjct: 451 FIARLRKRW 459
>gi|67619571|ref|XP_667654.1| nucleolar protein-like [Cryptosporidium hominis TU502]
gi|54658807|gb|EAL37423.1| nucleolar protein-like [Cryptosporidium hominis]
Length = 542
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 96/299 (32%), Positives = 142/299 (47%), Gaps = 47/299 (15%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RG V+ T ++V SS+ I P LAGHY L Q
Sbjct: 175 AQKLISRGANVDPTGEWTKVGLTIYSSSVPIGAT-PEYLAGHYMIQSASSLIPVMALAPQ 233
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
PG+K+LDM AAPG K T+I LM ++G L A D K R T L + ++
Sbjct: 234 PGEKILDMAAAPGGKTTYIGQLMKNSGILYANDLRKDRCTGLIANLHRMG---------- 283
Query: 145 STRINTSSQIDIERMKLQK--ESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKS 199
IN S ++++ +L DR+LLDAPC+G G + P S K++
Sbjct: 284 ---INNSIVVNMDGKELGSFLPKLDRVLLDAPCTGLGIIARDPSVKVKRSI----KELAQ 336
Query: 200 YANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVE 259
++ +QK+LL+A V G G +VY TCS+S+EENE V+ +IL R V+
Sbjct: 337 HSLLQKELLKAAVDMVDANSKTG-------GYIVYSTCSISIEENEMVVDYIL-RTRHVK 388
Query: 260 LVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKKYGEAPE 318
LV ++G G++ K E + + + P N D GFF+ KL+K + P+
Sbjct: 389 LVPLGVEIGSNGIS-KFREHRFNPTISTYTRRIYPHLNNMD--GFFVAKLKKISNDIPK 444
>gi|296423329|ref|XP_002841207.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Tuber melanosporum Mel28]
gi|295637442|emb|CAZ85398.1| unnamed protein product [Tuber melanosporum]
Length = 643
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 88/289 (30%), Positives = 133/289 (46%), Gaps = 47/289 (16%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V + + S L P LAGHY L Q +
Sbjct: 306 LINRGVTLEPVGKWSKV-GLQIFESQVPLGATPEYLAGHYILQAASSFLPVMALAPQENE 364
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
++LDM AAPG K T+I+ LM +TG + A D ++ R L I +L + + YD+
Sbjct: 365 RILDMAAAPGGKTTYISALMKNTGCVFANDSNRARTKGLIGNIHRLGVKNTIVCNYDAKE 424
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY---ANIQ 204
FDR+LLDAPCSG G + + + +K K + ++Q
Sbjct: 425 FPKVIG-----------GFDRVLLDAPCSGTG----VISKDPSVKTNKNAKDFMLLPHLQ 469
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL 264
K+LL V G G LVY TCS++VEENE+V+ + L + P V+LV+T
Sbjct: 470 KQLLLCAIDSVDYASPTG-------GYLVYSTCSVTVEENESVVEYALRKRPNVKLVETG 522
Query: 265 PQLGMKGLAHKDLEAEDQAV--MQRFGPPLIPTDRNTDTIGFFICKLRK 311
G +G + ++ + +RF P + D GFF+ K +K
Sbjct: 523 LTFGREGFTSYRGKTFNEKMKWARRFYPHMYNVD------GFFVAKFKK 565
>gi|229025307|ref|ZP_04181726.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH1272]
gi|228735998|gb|EEL86574.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH1272]
Length = 387
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 119/245 (48%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G +VLD CAAPG K THIA + TG +++LD +V + +
Sbjct: 175 IQDESSMLVARALEPNEGDEVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIRQ 234
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
+L L +++T D+ ++ + E+FD+IL+DAPCSGFG + +
Sbjct: 235 QADRLGLENVETKALDARKVQEH---------FENETFDKILVDAPCSGFG--VIRRKPD 283
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 284 IKLGKDKGDSERLSTIQFAILEKI-----------APLLKQGGRLVYSTCTIEKIENEQV 332
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E T+ + + L+ E + Q + F T GF+I
Sbjct: 333 IERFLQEHPEFEWDTTIKERMPEKLSPYIDEGQVQILPHYFA-----------TDGFYIA 381
Query: 308 KLRKK 312
LRKK
Sbjct: 382 CLRKK 386
>gi|344228747|gb|EGV60633.1| NOL1/NOP2/sun family putative RNA met [Candida tenuis ATCC 10573]
Length = 357
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 85/265 (32%), Positives = 125/265 (47%), Gaps = 36/265 (13%)
Query: 55 SQVPNVALDSSMG---ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTG 111
SQVP A + ILQ S L LD Q +++LDM AAPG K T+I+ LM +TG
Sbjct: 54 SQVPIGATPEYLAGQYILQAASSFLPVMALDPQENERILDMAAAPGGKTTYISALMKNTG 113
Query: 112 TLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILL 171
+ A D +K R L I +L + YD+ FDRILL
Sbjct: 114 CVFANDANKARTKSLIANIHRLGCKNTIVCNYDAREFPKVIG-----------GFDRILL 162
Query: 172 DAPCSGFGQRPMFYNANSFLNLDKKIKSYANI---QKKLLQAVYRFVSLFDWQGIPLLKK 228
DAPCSG G + + +++ K + I QK+L+ + V G
Sbjct: 163 DAPCSGTG----VIAKDESVKVNRNEKDFIQIPHLQKQLILSAIDSVDANSATG------ 212
Query: 229 DGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQ--AVMQ 286
G++VY TCS+++EENEAV+ + L + P V+LV+T Q+G G + D ++ +
Sbjct: 213 -GVIVYSTCSVAIEENEAVVDYALRKRPNVKLVETHLQVGKPGFVSYRGKHFDSSLSLTR 271
Query: 287 RFGPPLIPTDRNTDTIGFFICKLRK 311
R+ P D GF++ K +K
Sbjct: 272 RYYPHTYNVD------GFYVAKFKK 290
>gi|293553676|ref|ZP_06674300.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1039]
gi|291602251|gb|EFF32479.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1039]
Length = 452
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 120/249 (48%), Gaps = 42/249 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDT--GTLIALDKSKPRVTKL 126
+Q+ S+L + ++P VLD CAAPG K THIA ++ + G ++ALD + +V +
Sbjct: 241 IQDESSMLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDPSCGGEVVALDVHEHKVKLI 300
Query: 127 EETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFY 185
E+ +L +SS + D+ ++ + + E FDRIL+DAPCSG G
Sbjct: 301 EDNAARLGVSSAVYAQKMDAREVSK---------QFEAEQFDRILVDAPCSGLG----LL 347
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ K+ AN+ K L+ + R P LK GIL Y TC++ EEN+
Sbjct: 348 RRKPDIRYKKQPDELANLPKIQLEILERCA--------PALKSSGILTYSTCTILKEENQ 399
Query: 246 AVIAWILHRHPEVELVQTL--PQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIG 303
V++ L RHP+ E + L P L Q+ ++ L P TD G
Sbjct: 400 DVVSAFLERHPDFERIDVLTNPML--------------QSSIEEKMLTLYPHQFYTD--G 443
Query: 304 FFICKLRKK 312
FFIC LRKK
Sbjct: 444 FFICCLRKK 452
>gi|228902369|ref|ZP_04066525.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis IBL 4222]
gi|228857267|gb|EEN01771.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis IBL 4222]
Length = 429
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 121/245 (49%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G+ VLD CAAPG K THIA + TG +++LD +V +++
Sbjct: 217 IQDESSMLVARALEPNEGETVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQ 276
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
++L L +++T D+ ++ E+FD+IL+DAPCSGFG + +
Sbjct: 277 QAERLGLENVETKALDARKVQEH---------FSNETFDKILVDAPCSGFG--VIRRKPD 325
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 326 IKLGKDKGDSERLSTIQLAILEKI-----------APLLKQGGRLVYSTCTIEKIENEQV 374
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E T+ + + L+ E + Q + P TD GF+I
Sbjct: 375 IDKFLKEHPEFEWDTTIKERMPEKLSKYINEGQVQIL-----PHYFATD------GFYIA 423
Query: 308 KLRKK 312
LRKK
Sbjct: 424 CLRKK 428
>gi|404491794|ref|YP_006715900.1| 16S rRNA (5-methyl-C967)-methyltransferase [Pelobacter carbinolicus
DSM 2380]
gi|77543940|gb|ABA87502.1| 16S rRNA (5-methyl-C967)-methyltransferase [Pelobacter carbinolicus
DSM 2380]
Length = 451
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 96/192 (50%), Gaps = 27/192 (14%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
LQ+ S+L H L+ QPG+++LD CAAPG K TH+A L ++ ++ALD RV +
Sbjct: 238 LQDQASMLISHLLNPQPGERILDACAAPGGKTTHMAALTDNRARIVALDLHPQRVDLITR 297
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
+L I+ H +D T + L+ SFDRIL+DAPCSG G N
Sbjct: 298 GANRLGCQGIEGHAWDLTGVPDF---------LEPASFDRILVDAPCSGLG----VLRRN 344
Query: 189 SFLNLDKK---IKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ +K +K A IQ+ +L V PLL+ G LVY C+ S EE +
Sbjct: 345 PEIRWRRKPADLKEMARIQRAILGNV-----------APLLRPGGRLVYSLCTFSPEETQ 393
Query: 246 AVIAWILHRHPE 257
VI + HPE
Sbjct: 394 NVIRAFTNEHPE 405
>gi|308069674|ref|YP_003871279.1| ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Paenibacillus
polymyxa E681]
gi|305858953|gb|ADM70741.1| Ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Paenibacillus
polymyxa E681]
Length = 471
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 83/260 (31%), Positives = 128/260 (49%), Gaps = 42/260 (16%)
Query: 59 NVALDS--SMGIL--QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLI 114
N+AL S + G+L Q+ S+L + +PG VLD CAAPG K H+A LM D G ++
Sbjct: 245 NMALTSWYTDGLLSVQDESSMLVAEAVAPEPGMLVLDCCAAPGGKTAHMAELMKDHGRIV 304
Query: 115 ALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAP 174
A D + + E +L L +++T D+ + + + SFDRILLDAP
Sbjct: 305 ANDLHAHKHQLIREQANRLGLDAVETVTGDALEL---------KERYAPASFDRILLDAP 355
Query: 175 CSGFG---QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGI 231
CSGFG ++P + + + ++ +Q +LL +V LLK GI
Sbjct: 356 CSGFGVIRRKPDLRWSKTA----QDVRDITQLQHELLDSV-----------AGLLKPGGI 400
Query: 232 LVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPP 291
LVY TC++ +ENE + L HPE E + G + D+ E ++ Q
Sbjct: 401 LVYSTCTIEPDENEGQLTQFLSEHPEYEWAE--------GHSFPDVNREKDSI-QGGSVQ 451
Query: 292 LIPTDRNTDTIGFFICKLRK 311
L+P ++D GF+I +LR+
Sbjct: 452 LLPQHFHSD--GFYIARLRR 469
>gi|423518555|ref|ZP_17495036.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuA2-4]
gi|401160763|gb|EJQ68138.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuA2-4]
Length = 444
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 81/247 (32%), Positives = 117/247 (47%), Gaps = 38/247 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G VLD CAAPG K THIA ++ TG +++LD +V +E+
Sbjct: 232 IQDESSMLVARALEPNKGDTVLDSCAAPGGKTTHIAERLDGTGKVMSLDLHAHKVRLIEQ 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
K+L L +++T D+ ++ ESFD+IL+DAPCSGFG ++P
Sbjct: 292 QAKRLGLENVETMALDARKVQEH---------FANESFDKILVDAPCSGFGVIRRKPDIK 342
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ ++ + IQ +L+ + PLLK+ G LVY TC++ ENE
Sbjct: 343 LGKGKGDSER----LSTIQLAILEKI-----------APLLKQGGRLVYSTCTIEKIENE 387
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
VI L HPE E T+ K + L R P TD GF+
Sbjct: 388 QVIKQFLQEHPEFEWDTTI-----KDRMPEKLNPYIDEGQVRILPHYFATD------GFY 436
Query: 306 ICKLRKK 312
I LRKK
Sbjct: 437 IACLRKK 443
>gi|160915657|ref|ZP_02077865.1| hypothetical protein EUBDOL_01664 [Eubacterium dolichum DSM 3991]
gi|158432133|gb|EDP10422.1| NOL1/NOP2/sun family protein [Eubacterium dolichum DSM 3991]
Length = 444
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 117/232 (50%), Gaps = 32/232 (13%)
Query: 81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQT 140
L V+ G VLD+CAAPG K T IA + TG L+A + R L LS+++
Sbjct: 96 LGVEKGDWVLDLCAAPGGKTTQIADALAHTGFLVANEIDPKRAQVL--------LSNMER 147
Query: 141 HVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY 200
+ I ++ D+ K K FD++L+DAPCSG G A +++ +K+
Sbjct: 148 LGFYECMITNANPKDL--TKAMKGCFDKVLVDAPCSGEGMFRKHSKAMEDWSVEH-VKAC 204
Query: 201 ANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVEL 260
A QK +L+ Y LK+ GILVY TC+ ++EENE VIA + +HP++EL
Sbjct: 205 AQRQKHILENAYE-----------ALKESGILVYSTCTYAMEENEEVIADFMEKHPDMEL 253
Query: 261 VQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKK 312
+ G G +KDL++E ++P D+ G F+ KLRK+
Sbjct: 254 LDPCVSFGRCGFPYKDLDSEKLV-------RILPMDKGE---GHFVAKLRKR 295
>gi|75762655|ref|ZP_00742497.1| 16S rRNA m(5)C 967 methyltransferase [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|74489854|gb|EAO53228.1| 16S rRNA m(5)C 967 methyltransferase [Bacillus thuringiensis
serovar israelensis ATCC 35646]
Length = 368
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 120/245 (48%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G+ VLD CAAPG K THIA + TG +++LD +V +++
Sbjct: 156 IQDESSMLVARALEPNEGETVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQ 215
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
++L L +++T D+ ++ E+FD+IL+DAPCSGFG + +
Sbjct: 216 QAERLGLENVETKALDARKVQEH---------FSNETFDKILVDAPCSGFG--VIRRKPD 264
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 265 IKLGKDKGDSERLSTIQLAILEKI-----------APLLKQGGRLVYSTCTIEKIENEQV 313
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E T+ + + L+ E + Q + F T GF+I
Sbjct: 314 IDKFLKEHPEFEWDTTIKERMPEKLSKYINEGQVQILPHYFA-----------TDGFYIA 362
Query: 308 KLRKK 312
LRKK
Sbjct: 363 CLRKK 367
>gi|268534138|ref|XP_002632199.1| C. briggsae CBR-NOL-1 protein [Caenorhabditis briggsae]
Length = 664
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 96/295 (32%), Positives = 143/295 (48%), Gaps = 53/295 (17%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A +++ RG+ V+ ++V V DS + + P LAGHY L Q
Sbjct: 245 AKNLINRGMNVDPAAEWTKVGLVVYDSQVPVGAT-PEYLAGHYMIQGLNSLLPVMALAPQ 303
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
PG +VLDMC+APG K +HIA LM ++GTL A D S R + + +L V +
Sbjct: 304 PGDRVLDMCSAPGGKTSHIAALMKNSGTLFANDASFDRCRAIIGNLHRL-------GVNN 356
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANI 203
+ N + E K++ FDRILLDAPCSG G ++ + + + D + ++ +
Sbjct: 357 AVVCNLGGE---EFSKIKPNGFDRILLDAPCSGTG--VIWKDQSVKTSKDSQDVQRRHTV 411
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
Q++L+ + + G G LVY TCS+ VEENEAV+ ++L R ELV T
Sbjct: 412 QRQLILSALDSLDANSPNG-------GYLVYSTCSVLVEENEAVVNFLLERR-HCELVPT 463
Query: 264 LPQLGMKGLAH-KDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
+G+ G +D RF P L T R N D GF++ K++K
Sbjct: 464 GLAIGVDGYTRFRDY---------RFHPSLSMTKRYYPHVHNID--GFYVAKIKK 507
>gi|313683659|ref|YP_004061397.1| fmu (sun) domain-containing protein [Sulfuricurvum kujiense DSM
16994]
gi|313156519|gb|ADR35197.1| Fmu (Sun) domain protein [Sulfuricurvum kujiense DSM 16994]
Length = 315
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 87/249 (34%), Positives = 128/249 (51%), Gaps = 33/249 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+QNL S++A L QP + VLD+ AAPG K +A +M +TG L A++ S+ R +L +
Sbjct: 91 IQNLASMIAPLLLSPQPEETVLDLAAAPGGKTLMLAGMMQNTGWLSAVEPSRERFFRLCD 150
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQ-RPMFYNA 187
+K +++ T++ D + K E FDRILLDAPCS + + +
Sbjct: 151 NLKSQGVTNAHTYMTDGRSVG----------KKCPEMFDRILLDAPCSSEARFKTHDPKS 200
Query: 188 NSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
SF ++ K+K + +Q++LL + Y LK G L+YCTCS S EENE+
Sbjct: 201 MSFWSI-HKVKETSKLQRRLLLSAYD-----------ALKPGGKLLYCTCSFSPEENESP 248
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRF---GPPLIPTDRNTDTI-G 303
+ +L RH E + TLP K LE + V + G ++P TDTI G
Sbjct: 249 LQHLLERH--GEHLNTLPLTLPFDNIQKPLERWGKEVFDKRIQNGVRILP----TDTIDG 302
Query: 304 FFICKLRKK 312
FF+C L KK
Sbjct: 303 FFLCMLEKK 311
>gi|434376969|ref|YP_006611613.1| 16S rRNA methyltransferase B [Bacillus thuringiensis HD-789]
gi|401875526|gb|AFQ27693.1| 16S rRNA methyltransferase B [Bacillus thuringiensis HD-789]
Length = 444
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 121/245 (49%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G+ VLD CAAPG K THIA + TG +++LD +V +++
Sbjct: 232 IQDESSMLVARALEPNEGETVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQ 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
++L L +++T D+ ++ E+FD+IL+DAPCSGFG + +
Sbjct: 292 QAERLGLENVETKALDARKVQEH---------FSNETFDKILVDAPCSGFG--VIRRKPD 340
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 341 IKLGKDKGDSERLSTIQLAILEKI-----------APLLKQGGRLVYSTCTIEKIENEQV 389
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E T+ + + L+ E + Q + P TD GF+I
Sbjct: 390 IDKFLKEHPEFEWDTTIKERMPEKLSKYINEGQVQIL-----PHYFATD------GFYIA 438
Query: 308 KLRKK 312
LRKK
Sbjct: 439 CLRKK 443
>gi|406981882|gb|EKE03270.1| hypothetical protein ACD_20C00225G0014 [uncultured bacterium]
Length = 445
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 129/263 (49%), Gaps = 36/263 (13%)
Query: 52 NVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTG 111
N + +P + +Q+ S L LD Q KVLD+CAAPG K THIA LMNDTG
Sbjct: 215 NSVKSIP--GFEEGFWTVQSESSSLVSIVLDPQENGKVLDLCAAPGGKTTHIAALMNDTG 272
Query: 112 TLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILL 171
+ A+D + R+ K++ +L + S++ D+T+ + + +DRIL+
Sbjct: 273 EITAVDINPKRLEKVQNNCLRLGVKSVKIKAADATKYQSDKK------------YDRILI 320
Query: 172 DAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGI 231
DAPCS G +A + + I++ A +Q ++L L+K GI
Sbjct: 321 DAPCSNTGVLIKRIDA-RWKKSPEDIQNLAILQLEILN-----------NAAKLVKSGGI 368
Query: 232 LVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKD---LEAEDQAVMQRF 288
+VY TCS+ EEN+ VI L + + + + +P L K +++ ED+ Q
Sbjct: 369 IVYSTCSIEPEENQQVIEKFLENNRDFQADKIMPYLPWKCETNENPLCSSEEDKGYFQ-- 426
Query: 289 GPPLIPTDRNTDTIGFFICKLRK 311
++ + +N D GFFI +LRK
Sbjct: 427 ---ILQSRQNID--GFFIARLRK 444
>gi|423389828|ref|ZP_17367054.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG1X1-3]
gi|423418228|ref|ZP_17395317.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG3X2-1]
gi|401106501|gb|EJQ14462.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG3X2-1]
gi|401641919|gb|EJS59636.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG1X1-3]
Length = 444
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 120/245 (48%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G +VLD CAAPG K THIA + TG +++LD +V + +
Sbjct: 232 IQDESSMLVARALEPNEGDEVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIRQ 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
+L L +++T D+ ++ + E+FD+IL+DAPCSGFG + +
Sbjct: 292 QADRLGLENVETKALDARKVQEH---------FENETFDKILVDAPCSGFG--VIRRKPD 340
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 341 IKLGKDKGDSERLSTIQFAILEKI-----------APLLKQGGRLVYSTCTIEKIENEQV 389
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E T+ + + L+ E + Q + P TD GF+I
Sbjct: 390 IERFLQEHPEFEWDTTIKERMPEKLSPYIDEGQVQIL-----PHYFATD------GFYIA 438
Query: 308 KLRKK 312
LRKK
Sbjct: 439 CLRKK 443
>gi|426371347|ref|XP_004052608.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 isoform 3
[Gorilla gorilla gorilla]
Length = 628
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 97/301 (32%), Positives = 140/301 (46%), Gaps = 52/301 (17%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+ V DSS+ I P LAGHY L Q
Sbjct: 321 AQALINRGVNLDPLGKWSKTGLVVYDSSVPIGAT-PEYLAGHYMLQGASSMLPVMALAPQ 379
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDMC APG K +++A LM +TG ++A D + R+ + + +L +++ YD
Sbjct: 380 EHERILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYD 439
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANI 203
+ T FDR+LLDAPCSG G + + N D+K I A++
Sbjct: 440 GRQFPTVVG-----------GFDRVLLDAPCSGTGV--ISKDPAVKTNKDEKDILRCAHL 486
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
QK+LL + V+ G G LVYCTCS++VEENE V+ + L + V LV T
Sbjct: 487 QKELLLSAIDSVNATSKTG-------GYLVYCTCSITVEENEWVVDYALKKR-NVRLVPT 538
Query: 264 LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRKKYGEAP 317
G +G + +RF P L T R N D GFFI K +K P
Sbjct: 539 GLDFGQEGFT--------RFRERRFHPSLRSTRRFYPHTHNMD--GFFIAKFKKFSNSIP 588
Query: 318 E 318
+
Sbjct: 589 Q 589
>gi|229019063|ref|ZP_04175901.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH1273]
gi|228742231|gb|EEL92393.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH1273]
Length = 369
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 119/245 (48%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G +VLD CAAPG K THIA + TG +++LD +V + +
Sbjct: 157 IQDESSMLVARALEPNEGDEVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIRQ 216
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
+L L +++T D+ ++ + E+FD+IL+DAPCSGFG + +
Sbjct: 217 QADRLGLENVETKALDARKVQEH---------FENETFDKILVDAPCSGFG--VIRRKPD 265
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 266 IKLGKDKGDSERLSTIQFAILEKI-----------APLLKQGGRLVYSTCTIEKIENEQV 314
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E T+ + + L+ E + Q + F T GF+I
Sbjct: 315 IERFLQEHPEFEWDTTIKERMPEKLSPYIDEGQVQILPHYFA-----------TDGFYIA 363
Query: 308 KLRKK 312
LRKK
Sbjct: 364 CLRKK 368
>gi|206901447|ref|YP_002251151.1| ribosomal RNA small subunit methyltransferase B [Dictyoglomus
thermophilum H-6-12]
gi|206740550|gb|ACI19608.1| ribosomal RNA small subunit methyltransferase B [Dictyoglomus
thermophilum H-6-12]
Length = 430
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 109/197 (55%), Gaps = 28/197 (14%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
++Q+ S+L L+ +PG +V+D+C+APG K TH+A LMN+ G ++++D +K RV +E
Sbjct: 226 VIQSEASMLPALILNPEPGSRVIDLCSAPGLKSTHLAELMNNKGKIVSVDINKNRVKLVE 285
Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMF 184
E K+L +S I+T D + S +FDR+LLDAPCSG G +P
Sbjct: 286 ENAKRLGISIIETLAEDVLNLPDSLN----------GTFDRVLLDAPCSGLGVISHKPEI 335
Query: 185 YNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
+ + I + +Q K+L+ + LLKK G +VY TC+++ EN
Sbjct: 336 ----KWRLKREDIYKLSEMQIKMLE-----------RAGKLLKKGGRMVYSTCTITWHEN 380
Query: 245 EAVIAWILHRHPEVELV 261
E V+ + L R+PE +L+
Sbjct: 381 ENVVLYFLERNPEFKLI 397
>gi|363728317|ref|XP_416502.2| PREDICTED: putative ribosomal RNA methyltransferase NOP2 [Gallus
gallus]
Length = 645
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 97/294 (32%), Positives = 137/294 (46%), Gaps = 53/294 (18%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV ++ S+ V DSS+ I P LAGHY L Q +
Sbjct: 328 LINRGVNLDPLGKWSKTGLVIYDSSVPIGAT-PEYLAGHYMLQGASSLLPVMALAPQENE 386
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
++LDMC APG K ++IA LM +TG ++A D + R+ + + +L +++ D +
Sbjct: 387 RILDMCCAPGGKTSYIAQLMKNTGMILANDSNAERLRSVVGNLHRLGVTNAVVSNCDGRQ 446
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYANIQ 204
L E FDR+LLDAPCSG G + P +K I A++Q
Sbjct: 447 FPKVCSC------LLWEGFDRVLLDAPCSGTGVISKDPAIKTNKD----EKDILRCAHLQ 496
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL 264
K+LL + V+ G G +VYCTCS++VEENE V+ + L + V LV T
Sbjct: 497 KELLLSAIDSVNATSETG-------GYIVYCTCSITVEENEWVVDYALKKR-NVRLVATG 548
Query: 265 PQLGMKGLAH-KDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
G +G KD +RF P L T R N D GFFI KL+K
Sbjct: 549 LDFGKEGFTRFKD---------RRFHPSLKSTRRFYPHTHNMD--GFFIAKLKK 591
>gi|146422021|ref|XP_001486953.1| hypothetical protein PGUG_00331 [Meyerozyma guilliermondii ATCC
6260]
Length = 641
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 132/296 (44%), Gaps = 55/296 (18%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ ++V DS + I P LAGHY L Q
Sbjct: 316 AQRLVNRGVNLQPIGAWTKVGLQIFDSQVPIGAT-PEYLAGHYILQAASSFLPVMALQPQ 374
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDM AAPG K T+I+ LM +TG + A D +K R L I +L + YD
Sbjct: 375 ENERILDMAAAPGGKTTYISALMKNTGCVFANDANKARTKSLIANIHRLGCKNTIVCNYD 434
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANI- 203
+ FDR+LLDAPCSG G + + + + K + I
Sbjct: 435 AREFPKVIG-----------GFDRVLLDAPCSGTG----VIAKDESVKVSRTEKDFMQIP 479
Query: 204 --QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
QK+LL + V G G++VY TCS++V+ENEAV+ + L + P V+LV
Sbjct: 480 HLQKQLLLSAIDSVDANSSTG-------GVIVYSTCSVAVDENEAVVDYALRKRPNVKLV 532
Query: 262 QTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
T Q+G +G + F P L T R N D GFF+ K +K
Sbjct: 533 DTELQIGKEGFT--------SYRGKNFSPKLSLTRRYYPHTYNVD--GFFVAKFKK 578
>gi|440755727|ref|ZP_20934929.1| ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa TAIHU98]
gi|440175933|gb|ELP55302.1| ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa TAIHU98]
Length = 450
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 101/196 (51%), Gaps = 29/196 (14%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
LQ++ + L + LD QPG+ ++D CAAPG K THIA LM D G ++A D++ R+ +LE
Sbjct: 238 LQDISAQLVTYLLDPQPGETIIDACAAPGGKTTHIAELMGDRGRILACDQTPSRLRQLEA 297
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
IK+L L +I+ H+ DS I DR+L+DAPCSG G +RP
Sbjct: 298 NIKRLDLKAIEIHLGDSRDRPQWCGI-----------ADRVLIDAPCSGLGTLHKRPDIR 346
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ NL A Q +LL + +V K GILVY TC+L ENE
Sbjct: 347 WRQTPENL----PVLAKRQGELLASAATWV-----------KPKGILVYATCTLDPLENE 391
Query: 246 AVIAWILHRHPEVELV 261
VI L HP+ ++
Sbjct: 392 RVIEQFLAAHPDWKMA 407
>gi|428771628|ref|YP_007163418.1| sun protein [Cyanobacterium aponinum PCC 10605]
gi|428685907|gb|AFZ55374.1| sun protein [Cyanobacterium aponinum PCC 10605]
Length = 455
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 118/252 (46%), Gaps = 54/252 (21%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ + L H L+ Q G+ ++D CAAPG K THIA LM D G +IA+D R+ K++E
Sbjct: 246 IQDASAQLVTHLLNPQAGETIIDACAAPGGKTTHIAELMGDKGKVIAIDTYAKRLEKIKE 305
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
+L L+ I+ DS+ + + DR+L+D PCSG G + N
Sbjct: 306 NATRLGLTCIEVKEGDSSELTE-----------WENQADRVLVDVPCSGLGT----LHTN 350
Query: 189 SFLNLDKK---IKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ KK I+ +Q+K+L ++V K GILVY TC+L+ +ENE
Sbjct: 351 PDIRWRKKPEEIEKLTRLQQKILTNASKWV-----------KNGGILVYATCTLNQKENE 399
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPP------LIPTDRNT 299
++ L HP+ + L+ ++ + + P + P D N
Sbjct: 400 NIVTEFLANHPQWQ-----------------LDTKNNNFLDNYSLPSKGMIKIFPPDDNM 442
Query: 300 DTIGFFICKLRK 311
D GFFI KL K
Sbjct: 443 D--GFFIAKLIK 452
>gi|300796393|ref|NP_001178714.1| putative ribosomal RNA methyltransferase NOP2 [Rattus norvegicus]
Length = 772
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 100/316 (31%), Positives = 144/316 (45%), Gaps = 56/316 (17%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+ V DSS+ I P LAGHY L Q
Sbjct: 305 AQALINRGVNLDPLGKWSKSGLVVYDSSVPIGAT-PEYLAGHYMLQGASSMLPVMALAPQ 363
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDMC APG K ++IA LM +TG ++A D + R+ + + +L +++ YD
Sbjct: 364 EHERILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIVSHYD 423
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANI 203
+ FDR+LLDAPCSG G + + N D+K I+ A++
Sbjct: 424 GRQFPKVVG-----------GFDRVLLDAPCSGTGV--ISKDPAVKTNKDEKDIQRCAHL 470
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
QK+LL + V+ G G LVYCTCS++VEENE V+ + L + V LV T
Sbjct: 471 QKELLLSAIDSVNAASKTG-------GYLVYCTCSITVEENEWVVDYALKKR-NVRLVPT 522
Query: 264 LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRKKYGEAP 317
G +G + +RF P L T R N D GFFI K +K P
Sbjct: 523 GLDFGQEGFT--------RFRERRFHPTLRATRRFYPHTHNMD--GFFIAKFKKFSNSIP 572
Query: 318 EIYIHPHLNDCIVIGP 333
+ PH + P
Sbjct: 573 Q----PHSGNSAAGTP 584
>gi|361128689|gb|EHL00619.1| putative ribosomal RNA methyltransferase Nop2 [Glarea lozoyensis
74030]
Length = 727
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 92/292 (31%), Positives = 137/292 (46%), Gaps = 47/292 (16%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV +E S++ +S++ L P LAGHY L Q
Sbjct: 315 ATSLINRGVTLEPVGKWSKIGLQVFESAV-PLGATPEYLAGHYILQAASSFLPVMALAPQ 373
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
++VLDM AAPG K TH+A LM +TG + A D +K R L I +L + YD
Sbjct: 374 EHERVLDMAAAPGGKTTHLAALMKNTGVIFANDSNKSRAKGLIGNIHRLGAKNTIVCNYD 433
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY---A 201
+ E K+ FDR+LLDAPCSG G + + +K K +
Sbjct: 434 AR----------EFPKVMG-GFDRVLLDAPCSGTG----VIAKDPSVKTNKTEKDFLMLP 478
Query: 202 NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
++QK+LL + V G G +VY TCS++VEENE V+ + L + P V+LV
Sbjct: 479 HLQKQLLLSAIDSVDHASKTG-------GYIVYSTCSVTVEENEQVVQYALSKRPNVKLV 531
Query: 262 QTLPQLGMKGLAHKDLEAEDQA--VMQRFGPPLIPTDRNTDTIGFFICKLRK 311
+T G +G ++ D++ + +R+ P D GFF+ K +K
Sbjct: 532 ETGLVFGKEGFTSYMGKSFDKSLKMTRRYYPHAYNVD------GFFVSKFKK 577
>gi|168207268|ref|ZP_02633273.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens E str. JGS1987]
gi|169342659|ref|ZP_02629420.2| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens C str. JGS1495]
gi|169299165|gb|EDS81235.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens C str. JGS1495]
gi|170661376|gb|EDT14059.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens E str. JGS1987]
Length = 442
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 126/247 (51%), Gaps = 42/247 (17%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ ++L D++ ++V+D+C+APG K THI LM + G ++A D ++ ++E
Sbjct: 232 VQDESAMLVAPLFDLKGDEQVMDLCSAPGTKATHIGELMMNKGKVVAFDIHDHKLALIKE 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
I +L L++++ + D+T+IN S I+ DR+LLD PCSG G ++P
Sbjct: 292 NIDRLGLTNVEVELGDATKIN-SKYINWA---------DRVLLDVPCSGLGIIRKKPEIK 341
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+L + +K +QK++L+ + + L++ G LVY TC+L+ +ENE
Sbjct: 342 WNKKNNDLTEVVK----VQKEILKNAWNY-----------LREGGELVYSTCTLNKKENE 386
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
VI W + R+ + E+ + L D V G I ++ D GFF
Sbjct: 387 EVIDWFVERNSDCEVEKVF------------LGKADNVVYNDNGSVTILPNKYMD--GFF 432
Query: 306 ICKLRKK 312
I KL+KK
Sbjct: 433 IAKLKKK 439
>gi|168210626|ref|ZP_02636251.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens B str. ATCC 3626]
gi|168214218|ref|ZP_02639843.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens CPE str. F4969]
gi|168217028|ref|ZP_02642653.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens NCTC 8239]
gi|182625836|ref|ZP_02953602.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens D str. JGS1721]
gi|170711319|gb|EDT23501.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens B str. ATCC 3626]
gi|170714316|gb|EDT26498.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens CPE str. F4969]
gi|177908870|gb|EDT71362.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens D str. JGS1721]
gi|182380885|gb|EDT78364.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens NCTC 8239]
Length = 442
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 126/247 (51%), Gaps = 42/247 (17%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ ++L D++ ++V+D+C+APG K THI LM + G ++A D ++ ++E
Sbjct: 232 VQDESAMLVAPLFDLKGDEQVMDLCSAPGTKATHIGELMMNKGKVVAFDIHDHKLALIKE 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
I +L L++++ + D+T+IN S I+ DR+LLD PCSG G ++P
Sbjct: 292 NIDRLGLTNVEVELGDATKIN-SKYINWA---------DRVLLDVPCSGLGIIRKKPEIK 341
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+L + +K +QK++L+ + + L++ G LVY TC+L+ +ENE
Sbjct: 342 WNKKNNDLTEVVK----VQKEILKNAWNY-----------LREGGELVYSTCTLNKKENE 386
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
VI W + R+ + E+ + L D V G I ++ D GFF
Sbjct: 387 EVIDWFVERNSDCEVEKVF------------LGKADNVVYNDNGSVTILPNKYMD--GFF 432
Query: 306 ICKLRKK 312
I KL+KK
Sbjct: 433 IAKLKKK 439
>gi|393245574|gb|EJD53084.1| NOL1/NOP2/sun family putative RNA met [Auricularia delicata
TFB-10046 SS5]
Length = 460
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/291 (30%), Positives = 140/291 (48%), Gaps = 47/291 (16%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV +E + V +SS+ I P LAGHY L Q
Sbjct: 119 AQALINRGVNLEPIGKWTNVGLQVFESSVPIGAT-PEYLAGHYMLQAASSFLPVIALGPQ 177
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
P +++LDM +APG K T+I+ L+ +TG + A D +K R L I +L ++ YD
Sbjct: 178 PNERILDMASAPGGKTTYISALLQNTGLVFANDANKARTKSLTANIHRLGCKNVVVCNYD 237
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY---A 201
E K+ FDR+LLDAPCSG G + ++ + ++K + + +
Sbjct: 238 GR----------EFPKVMG-GFDRVLLDAPCSGTG----VISKDASVKVNKSERDFTLLS 282
Query: 202 NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
++QK+L+ V G GI+VY TCS++V+ENEAV+ + L + P V L+
Sbjct: 283 HLQKQLILCAIDSVDAHSKTG-------GIVVYSTCSVTVDENEAVVDYALRKRPNVRLL 335
Query: 262 QTLPQLGMKGLA--HKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLR 310
T + G +G + ++ + +RF P + N D GFF+ K +
Sbjct: 336 PTGLEFGKEGYTRYRGKVFSDKLNLTRRFYPHV----HNMD--GFFVAKFK 380
>gi|14590913|ref|NP_142986.1| fmu protein [Pyrococcus horikoshii OT3]
gi|3257494|dbj|BAA30177.1| 450aa long hypothetical fmu protein [Pyrococcus horikoshii OT3]
Length = 450
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 122/244 (50%), Gaps = 38/244 (15%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
++Q+L S H L+ +PG++VLD+ AAPG+K H A LM + G ++A+D S R+ K+
Sbjct: 244 VIQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENRGEIVAVDYSYDRLIKMR 303
Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNA 187
E +KKL + +++ ++ Q E KE FD+I+LDAPCS G F
Sbjct: 304 ERMKKLGVKNVKL-------VHADGQSYTE-----KEKFDKIILDAPCSSSGTYRQFPEV 351
Query: 188 NSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
N ++KIK ++Q+ +L YR L G + Y TCS+ ++ENE
Sbjct: 352 KWRFN-EEKIKRVISVQRNMLINAYRN-----------LAGGGEMTYSTCSIRIDENEQN 399
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
+ + + + +ELV + G KG LE D+ F D N+ FFI
Sbjct: 400 VLFAIEKG--LELVDYPFEWGDKGF----LEIGDKV----FRTWTHKHDCNS----FFIA 445
Query: 308 KLRK 311
KLRK
Sbjct: 446 KLRK 449
>gi|422874661|ref|ZP_16921146.1| 16S rRNA methyltransferase B [Clostridium perfringens F262]
gi|380304302|gb|EIA16591.1| 16S rRNA methyltransferase B [Clostridium perfringens F262]
Length = 442
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 126/247 (51%), Gaps = 42/247 (17%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ ++L D++ ++V+D+C+APG K THI LM + G ++A D ++ ++E
Sbjct: 232 VQDESAMLVAPLFDLKGDEQVMDLCSAPGTKATHIGELMMNKGKVVAFDIHDHKLALIKE 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
I +L L++++ + D+T+IN S I+ DR+LLD PCSG G ++P
Sbjct: 292 NIDRLGLTNVEVELGDATKIN-SKYINWA---------DRVLLDVPCSGLGIIRKKPEIK 341
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+L + +K +QK++L+ + + L++ G LVY TC+L+ +ENE
Sbjct: 342 WNKKNNDLTEVVK----VQKEILKNAWNY-----------LREGGELVYSTCTLNKKENE 386
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
VI W + R+ + E+ + L D V G I ++ D GFF
Sbjct: 387 EVIDWFVERNSDCEVEKVF------------LGKADNVVYNDNGSVTILPNKYMD--GFF 432
Query: 306 ICKLRKK 312
I KL+KK
Sbjct: 433 IAKLKKK 439
>gi|190344542|gb|EDK36232.2| hypothetical protein PGUG_00331 [Meyerozyma guilliermondii ATCC
6260]
Length = 641
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 132/296 (44%), Gaps = 55/296 (18%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ ++V DS + I P LAGHY L Q
Sbjct: 316 AQRLVNRGVNLQPIGAWTKVGLQIFDSQVPIGA-TPEYLAGHYILQAASSFLPVMALQPQ 374
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDM AAPG K T+I+ LM +TG + A D +K R L I +L + YD
Sbjct: 375 ENERILDMAAAPGGKTTYISALMKNTGCVFANDANKARTKSLIANIHRLGCKNTIVCNYD 434
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANI- 203
+ FDR+LLDAPCSG G + + + + K + I
Sbjct: 435 AREFPKVIG-----------GFDRVLLDAPCSGTG----VIAKDESVKVSRTEKDFMQIP 479
Query: 204 --QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
QK+LL + V G G++VY TCS++V+ENEAV+ + L + P V+LV
Sbjct: 480 HLQKQLLLSAIDSVDANSSTG-------GVIVYSTCSVAVDENEAVVDYALRKRPNVKLV 532
Query: 262 QTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
T Q+G +G + F P L T R N D GFF+ K +K
Sbjct: 533 DTELQIGKEGFT--------SYRGKNFSPKLSLTRRYYPHTYNVD--GFFVAKFKK 578
>gi|422346411|ref|ZP_16427325.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens WAL-14572]
gi|373225956|gb|EHP48283.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens WAL-14572]
Length = 442
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 126/247 (51%), Gaps = 42/247 (17%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ ++L D++ ++V+D+C+APG K THI LM + G ++A D ++ ++E
Sbjct: 232 VQDESAMLVAPLFDLKGDEQVMDLCSAPGTKATHIGELMMNKGKVVAFDIHDHKLALIKE 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
I +L L++++ + D+T+IN S I+ DR+LLD PCSG G ++P
Sbjct: 292 NIDRLGLTNVEVELGDATKIN-SKYINWA---------DRVLLDVPCSGLGIIRKKPEIK 341
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+L + +K +QK++L+ + + L++ G LVY TC+L+ +ENE
Sbjct: 342 WNKKNNDLTEVVK----VQKEILKNAWNY-----------LREGGELVYSTCTLNKKENE 386
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
VI W + R+ + E+ + L D V G I ++ D GFF
Sbjct: 387 EVIDWFVERNSDCEVEKVF------------LGKADNVVYNDNGSVTILPNKYMD--GFF 432
Query: 306 ICKLRKK 312
I KL+KK
Sbjct: 433 IAKLKKK 439
>gi|50291427|ref|XP_448146.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527457|emb|CAG61097.1| unnamed protein product [Candida glabrata]
Length = 619
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 90/269 (33%), Positives = 126/269 (46%), Gaps = 44/269 (16%)
Query: 55 SQVPNVALDSSMG---ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTG 111
SQVP A + ILQ S L LD Q ++VLDM +APG K T+I+ LM +TG
Sbjct: 315 SQVPIGATPEYLAGNYILQAASSFLPVVALDPQENERVLDMASAPGGKTTYISALMKNTG 374
Query: 112 TLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILL 171
+ A D +K R L I +L ++ YD+ FDR+LL
Sbjct: 375 CVFANDANKKRTKSLIANIHRLGCTNTIVCNYDAREFPKVIG-----------GFDRVLL 423
Query: 172 DAPCSGFGQRPMFYNANSFLNLDKKIKSYANI---QKKLLQAVYRFVSLFDWQGIPLLKK 228
DAPCSG G + + + + K + I QK+LL + V KK
Sbjct: 424 DAPCSGTG----VIGKDQSVKVSRTEKDFIQIPHLQKQLLLSAIDSVDANS-------KK 472
Query: 229 DGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRF 288
G++VY TCS++VEE+EAV+ + L + P V+LV T Q+G +G ++F
Sbjct: 473 GGVIVYSTCSVAVEEDEAVVDYALRKRPNVKLVDTGLQIGKEGFV--------SFRGKKF 524
Query: 289 GPPLIPTDR------NTDTIGFFICKLRK 311
P L T R N D GFF+ K +K
Sbjct: 525 HPSLKLTRRYYPHTYNVD--GFFVAKFQK 551
>gi|407706324|ref|YP_006829909.1| transition state regulatory protein AbrB [Bacillus thuringiensis
MC28]
gi|407384009|gb|AFU14510.1| sun protein [Bacillus thuringiensis MC28]
Length = 444
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 120/245 (48%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G+ VLD CAAPG K THIA + TG +++LD +V +++
Sbjct: 232 IQDESSMLVARALEPNEGETVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQ 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
++L L +I+T D+ ++ E+FD+IL+DAPCSGFG + +
Sbjct: 292 QAERLGLENIETKALDARKVQEH---------FANETFDKILVDAPCSGFG--VIRRKPD 340
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 341 IKLGKDKGDSERLSTIQLAILEKI-----------APLLKQGGRLVYSTCTIEKIENEQV 389
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E T+ + + L+ E + Q + F T GF+I
Sbjct: 390 IDKFLKEHPEFEWDTTIKERMPEKLSPYINEGQVQILPHYFA-----------TDGFYIA 438
Query: 308 KLRKK 312
LRKK
Sbjct: 439 CLRKK 443
>gi|110800441|ref|YP_696427.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens ATCC 13124]
gi|110675088|gb|ABG84075.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens ATCC 13124]
Length = 442
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 126/247 (51%), Gaps = 42/247 (17%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ ++L D++ ++V+D+C+APG K THI LM + G ++A D ++ ++E
Sbjct: 232 VQDESAMLVAPLFDLRGDEQVMDLCSAPGTKATHIGELMMNKGKVVAFDIHDHKLALIKE 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
I +L L++++ + D+T+IN S I+ DR+LLD PCSG G ++P
Sbjct: 292 NIDRLGLTNVEVELGDATKIN-SKYINWA---------DRVLLDVPCSGLGIIRKKPEIK 341
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+L + +K +QK++L+ + + L++ G LVY TC+L+ +ENE
Sbjct: 342 WNKKNNDLTEVVK----VQKEILKNAWNY-----------LREGGELVYSTCTLNKKENE 386
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
VI W + R+ + E+ + L D V G I ++ D GFF
Sbjct: 387 EVIDWFVERNSDCEVEKVF------------LGKADNVVYNDNGSVTILPNKYMD--GFF 432
Query: 306 ICKLRKK 312
I KL+KK
Sbjct: 433 IAKLKKK 439
>gi|341896868|gb|EGT52803.1| CBN-NOL-1 protein [Caenorhabditis brenneri]
Length = 687
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 96/295 (32%), Positives = 143/295 (48%), Gaps = 53/295 (17%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A +++ RG+ V+ ++V V DS + + P LAGHY L Q
Sbjct: 271 AKNLINRGMNVDPAADWTKVGLVVYDSQVPVGA-TPEYLAGHYMIQGLNSLLPVMALAPQ 329
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
PG +VLDMC+APG K +HIA LM ++GTL A D S R + + +L V +
Sbjct: 330 PGDRVLDMCSAPGGKTSHIAALMKNSGTLFANDASFDRCRAIIGNLHRL-------GVNN 382
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANI 203
+ N + E K++ FDRILLDAPCSG G ++ + + + D + ++ +
Sbjct: 383 AVVCNLGGE---EFAKIRPNGFDRILLDAPCSGTG--VIWKDQSVKTSKDSQDVQRRHTV 437
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
Q++L+ + + G G LVY TCS+ VEENEAV+ ++L R ELV T
Sbjct: 438 QRQLILSALDSLDANSPNG-------GYLVYSTCSVLVEENEAVVNFLLERR-HCELVPT 489
Query: 264 LPQLGMKGLAH-KDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
+G+ G +D RF P L T R N D GF++ K++K
Sbjct: 490 GLSIGVDGYTRFRDY---------RFHPSLSMTKRYYPHVHNID--GFYVAKIKK 533
>gi|228966815|ref|ZP_04127859.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar sotto str. T04001]
gi|228792914|gb|EEM40472.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar sotto str. T04001]
Length = 429
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 120/245 (48%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G+ VLD CAAPG K THIA + TG +++LD +V +++
Sbjct: 217 IQDESSMLVARALEPNEGETVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQ 276
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
++L L +++T D+ ++ E+FD+IL+DAPCSGFG + +
Sbjct: 277 QAERLGLENVETKALDARKVQEH---------FSNETFDKILVDAPCSGFG--VIRRKPD 325
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 326 IKLGKDKGDSERLSTIQLAILEKI-----------APLLKQGGRLVYSTCTIEKIENEQV 374
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E T+ + + L+ E + Q + F T GF+I
Sbjct: 375 IDKFLKEHPEFEWDTTIKERMPEKLSPYINEGQVQILPHYFA-----------TDGFYIA 423
Query: 308 KLRKK 312
LRKK
Sbjct: 424 CLRKK 428
>gi|261405800|ref|YP_003242041.1| sun protein [Paenibacillus sp. Y412MC10]
gi|261282263|gb|ACX64234.1| sun protein [Paenibacillus sp. Y412MC10]
Length = 442
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/251 (31%), Positives = 120/251 (47%), Gaps = 45/251 (17%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L + +PG +VLD CAAPG K H+ LMND G+++A D + + +
Sbjct: 228 IQDESSMLVAEAVQPEPGMRVLDCCAAPGGKSAHMGELMNDEGSIVANDIHAHKGKLISD 287
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
+L L DS I T +D+ + + SFDRILLDAPCSG G ++P
Sbjct: 288 QASRLGL--------DSISIVTGDALDLAD-RFEPASFDRILLDAPCSGLGVIRRKPDLK 338
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
S + I A +Q +LL++V LL+ GILVY TC++ ENE
Sbjct: 339 WGKS----QEDIHEIAALQLRLLESVS-----------TLLRPGGILVYSTCTIEPRENE 383
Query: 246 AVIAWILHRHPEVELVQ----TLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDT 301
V++ L H E + + L +LG LA G ++P ++D
Sbjct: 384 GVVSAFLEGHSEFAIAEDGLGALSRLGENSLARGG------------GIQILPQHYHSD- 430
Query: 302 IGFFICKLRKK 312
GF+I +L ++
Sbjct: 431 -GFYIARLGRR 440
>gi|229111336|ref|ZP_04240889.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock1-15]
gi|228672112|gb|EEL27403.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock1-15]
Length = 429
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 118/245 (48%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G VLD CAAPG K THIA + TG +++LD +V +++
Sbjct: 217 IQDESSMLVARALEPNTGDAVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQ 276
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
++L L +++T D+ ++ E+FD+IL+DAPCSGFG + +
Sbjct: 277 QAERLGLENVETKALDARKVQEH---------FSNETFDKILVDAPCSGFG--VIRRKPD 325
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 326 IKLGKDKGDSERLSTIQIAILEKI-----------APLLKQGGRLVYSTCTIEKIENEQV 374
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E TL + + L E + Q + F T GF+I
Sbjct: 375 IEKFLQEHPEFEWDTTLKERMPEKLTPYIDEGQVQILPHYFA-----------TDGFYIA 423
Query: 308 KLRKK 312
LRKK
Sbjct: 424 CLRKK 428
>gi|315231384|ref|YP_004071820.1| tRNA/RNA cytosine-C5-methylase [Thermococcus barophilus MP]
gi|315184412|gb|ADT84597.1| tRNA/RNA cytosine-C5-methylase [Thermococcus barophilus MP]
Length = 451
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 120/245 (48%), Gaps = 37/245 (15%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
++Q+L S H L + G+++LD+ AAPG+K H+A LM +TG +IA+D S R+ K+
Sbjct: 244 VIQDLASAYVAHVLGPEKGERILDLAAAPGSKTFHVAHLMENTGEIIAVDYSLERLNKMR 303
Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNA 187
E +K L + +++ D + +KE FDRI+LDAPCS G F
Sbjct: 304 EKMKILGVRNVKLVHADGMKFK------------EKEEFDRIILDAPCSSSGTYRQFPEV 351
Query: 188 NSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
+ ++KIK +QK +L+ YR L+ G + Y TCS+ ++ENE
Sbjct: 352 KWRFD-ERKIKKVIQVQKAMLRNAYRN-----------LRIGGEMTYSTCSIRIDENEEN 399
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I + +++ ELV G +G LE D+ R L D FFI
Sbjct: 400 IKYAMNKIG-FELVDYPFSWGERGF----LEIGDKVF--RAWTHL------HDCNSFFIA 446
Query: 308 KLRKK 312
KLRK+
Sbjct: 447 KLRKE 451
>gi|381157104|ref|ZP_09866338.1| ribosomal RNA small subunit methyltransferase RsmB [Thiorhodovibrio
sp. 970]
gi|380880967|gb|EIC23057.1| ribosomal RNA small subunit methyltransferase RsmB [Thiorhodovibrio
sp. 970]
Length = 465
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 115/239 (48%), Gaps = 45/239 (18%)
Query: 77 AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS 136
A L +PGQ+VLD CAAPGNK H+ L + L ALD R+ L + +L+L
Sbjct: 269 AAALLGAEPGQRVLDACAAPGNKTAHLQELAGNQLKLWALDHDSSRLQSLATNLARLKLH 328
Query: 137 SIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNL 193
+ + H D+T+ R ++ +DRILLDAPCSG G + P +L
Sbjct: 329 A-EIHQADATQ---------PRGDWAEQDYDRILLDAPCSGTGVIRRHPDI----KWLRR 374
Query: 194 DKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILH 253
D+ I + A+ Q +LL A++ PL++ G ++Y TCSL EEN IA L
Sbjct: 375 DQDIAALADTQARLLDALW-----------PLIRPRGEMLYVTCSLLPEENTQQIAAFLA 423
Query: 254 RHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKK 312
RHP+ + LG++ ++G +P+ +D GFF +L K+
Sbjct: 424 RHPDAREARIPVDLGLEC---------------QYGRQRLPSAHGSD--GFFFARLVKE 465
>gi|388583315|gb|EIM23617.1| NOL1/NOP2/sun family putative RNA met [Wallemia sebi CBS 633.66]
Length = 465
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 140/293 (47%), Gaps = 57/293 (19%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV++E ++V DS++ + P LAGHY LD QP +
Sbjct: 111 LINRGVSLEPIGKWTKVGLQIFDSNVPVGAT-PEYLAGHYMLQSPSSFLPVMALDPQPNE 169
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM +APG K ++++ LM +TG + A D + R L + +L ++ +D +
Sbjct: 170 RVLDMASAPGGKTSYMSALMQNTGVVFANDANAARTKSLSANVHRLGCKNVVVCTHDGRQ 229
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYA---NIQ 204
FDR+LLDAPCSG G + + + ++K + +A ++Q
Sbjct: 230 FPKVIG-----------GFDRVLLDAPCSGTG----VVSKDQSVKVNKTERDFALLSHLQ 274
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL 264
K+L+ ++ G G +VY TCS++V+E+E V+ + L + P V+LV T
Sbjct: 275 KQLILCAIDSINTKSATG-------GFVVYSTCSVTVDEDEGVVDYALKKRPNVKLVDTG 327
Query: 265 PQLGMKGLA-------HKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLR 310
+ G++G HKD+ + +RF P + + GFF+ KL+
Sbjct: 328 LEFGVEGFTNIGGKQFHKDMH-----LTRRFYPHVHNME------GFFVSKLQ 369
>gi|228909690|ref|ZP_04073513.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis IBL 200]
gi|228849979|gb|EEM94810.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis IBL 200]
Length = 429
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 120/245 (48%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G+ VLD CAAPG K THIA + TG +++LD +V +++
Sbjct: 217 IQDESSMLVARALEPNEGEAVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQ 276
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
++L L +++T D+ ++ E+FD+IL+DAPCSGFG + +
Sbjct: 277 QAERLGLENVETKALDARKVQEH---------FSNETFDKILVDAPCSGFG--VIRRKPD 325
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 326 IKLGKDKGDSERLSTIQLAILEKI-----------APLLKQGGRLVYSTCTIEKIENEQV 374
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E T+ + + L+ E + Q + F T GF+I
Sbjct: 375 IDKFLKEHPEFEWDTTIKERMPEKLSPYINEGQVQILPHYFA-----------TDGFYIA 423
Query: 308 KLRKK 312
LRKK
Sbjct: 424 CLRKK 428
>gi|148667388|gb|EDK99804.1| nucleolar protein 1, isoform CRA_a [Mus musculus]
gi|148667389|gb|EDK99805.1| nucleolar protein 1, isoform CRA_a [Mus musculus]
gi|148667390|gb|EDK99806.1| nucleolar protein 1, isoform CRA_a [Mus musculus]
Length = 792
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 102/318 (32%), Positives = 147/318 (46%), Gaps = 62/318 (19%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+ V DSS+ I P LAGHY L Q
Sbjct: 310 AQALINRGVNLDPLGKWSKSGLVVYDSSVPIGAT-PEYLAGHYMLQGASSMLPVMALAPQ 368
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDMC APG K ++IA LM +TG ++A D + R L S+ +++
Sbjct: 369 EHERILDMCCAPGGKTSYIAQLMKNTGVILANDANADR------------LKSVVGNLH- 415
Query: 145 STRINTSSQIDIERMKLQK--ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYA 201
R+ ++ I + + K FDR+LLDAPCSG G + + N D+K I+ A
Sbjct: 416 --RLGVTNTIHYDGRQFPKVVGGFDRVLLDAPCSGTGV--ISKDPAVKTNKDEKDIQRCA 471
Query: 202 NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
++QK+LL + V+ G G LVYCTCS++VEENE V+ + L + V LV
Sbjct: 472 HLQKELLLSAIDSVNAASKTG-------GYLVYCTCSITVEENEWVVDYALKKR-NVRLV 523
Query: 262 QTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRKKYGE 315
T G +G + +RF P L T R N D GFFI K +K
Sbjct: 524 PTGLDFGQEGFT--------RFQARRFHPTLRSTRRFYPHTHNMD--GFFIAKFKKFSNS 573
Query: 316 APEIYIHPHLNDCIVIGP 333
P+ PH + P
Sbjct: 574 IPQ----PHAGNSAAATP 587
>gi|145344001|ref|XP_001416528.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576754|gb|ABO94821.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 485
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 95/297 (31%), Positives = 140/297 (47%), Gaps = 58/297 (19%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+V + DS + I P +AGHY L Q
Sbjct: 213 AESLINRGVNLDPVGKWSKVGLLVYDSRVPIGAT-PEYMAGHYILQSASSFLPCMALAPQ 271
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
G++VLDM AAPG K T++A LM +TG + A + K R+ L +++L ++ YD
Sbjct: 272 EGERVLDMAAAPGGKTTYLAALMRNTGMIFANEYQKKRLNSLVANLQRLGCTNSTVCNYD 331
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK---IKSYA 201
+ DR+LLDAPCSG G +S + K I A
Sbjct: 332 GRALPKVIG-----------HVDRVLLDAPCSGTG----VIAKDSSVKTSKSAEDIAKCA 376
Query: 202 NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
++QK+LL A + D K G +VY TCS++VEENEAV+ +IL R +V++V
Sbjct: 377 HLQKELLVAA---IDCCDANS----KTGGYVVYSTCSIAVEENEAVVDYIL-RKRDVKIV 428
Query: 262 QTLPQLGMKGLA-------HKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
+ + G KG H +E + +RF P + D GFF+CKL+K
Sbjct: 429 SSGLEFGRKGFTSYRGKNFHPSVE-----MARRFYPHVHNMD------GFFVCKLKK 474
>gi|302828600|ref|XP_002945867.1| hypothetical protein VOLCADRAFT_120224 [Volvox carteri f.
nagariensis]
gi|300268682|gb|EFJ52862.1| hypothetical protein VOLCADRAFT_120224 [Volvox carteri f.
nagariensis]
Length = 829
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 95/297 (31%), Positives = 140/297 (47%), Gaps = 56/297 (18%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV+++ S+V V +S + I P +AGHY L Q
Sbjct: 271 AAALIQRGVSLDPIGPWSKVGLVVYESKVPIGAT-PEYMAGHYMLQGASSFMPVMALAPQ 329
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
P + V+DM AAPG K T+IA LM +TGT+ A + SK R+ + + +L +++ YD
Sbjct: 330 PEETVVDMAAAPGGKTTYIAALMRNTGTIFANEISKDRLKSITGNLTRLGVTNTIVCNYD 389
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYA 201
+ L + S DR+LLDAPCSG G + P + S + I
Sbjct: 390 GRELPGV---------LGERSVDRVLLDAPCSGTGVVSKDPTVKTSKS----QQDIWRCG 436
Query: 202 NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
++QK+LL A V G G +VY TCS+ VEE+E +I + L + V++V
Sbjct: 437 HLQKELLLAAIDMVDANSPTG-------GYIVYSTCSVCVEEDEVIINYALRKR-NVKVV 488
Query: 262 QTLPQLGMKGLA-HKDLEAEDQAVMQRFGPPL------IPTDRNTDTIGFFICKLRK 311
T + G +G ++D RF P L P N D GFF+CKL+K
Sbjct: 489 PTGLEFGREGFVRYRDF---------RFHPSLKHARRFYPHAHNLD--GFFVCKLKK 534
>gi|365159358|ref|ZP_09355539.1| ribosomal RNA small subunit methyltransferase B [Bacillus sp.
7_6_55CFAA_CT2]
gi|363625356|gb|EHL76397.1| ribosomal RNA small subunit methyltransferase B [Bacillus sp.
7_6_55CFAA_CT2]
Length = 444
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 120/245 (48%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G VLD CAAPG K THIA + TG +++LD +V +++
Sbjct: 232 IQDESSMLVARALEPNTGDAVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQ 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
++L L +++T D+ ++ E+FD+IL+DAPCSGFG + +
Sbjct: 292 QAERLGLENVETKALDARKVQEH---------FANETFDKILVDAPCSGFG--VIRRKPD 340
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 341 IKLGKDKGDSERLSTIQIAILEKI-----------APLLKQGGRLVYSTCTIEKIENEQV 389
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E TL + + K + D+ +Q P TD GF+I
Sbjct: 390 IEKFLQEHPEFEWDTTLKER----MPEKLIPYIDEGQVQIL-PHYFATD------GFYIA 438
Query: 308 KLRKK 312
LRKK
Sbjct: 439 CLRKK 443
>gi|15615070|ref|NP_243373.1| hypothetical protein BH2507 [Bacillus halodurans C-125]
gi|10175127|dbj|BAB06226.1| BH2507 [Bacillus halodurans C-125]
Length = 450
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 105/199 (52%), Gaps = 27/199 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L + +PG+++LD CAAPG K TH+A M+ GT+++LD + +V +EE
Sbjct: 236 IQDESSMLVARAVAPRPGERILDACAAPGGKSTHMAERMDGEGTIVSLDMHRHKVKLIEE 295
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
K+L L +I+ D+ + R E FDRIL+DAPCSG G ++P
Sbjct: 296 QAKRLGLDNIKAQTLDARKA---------REVFADEPFDRILVDAPCSGLGVIRRKPDI- 345
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ + +K+ N+Q +L +V + L+K G+L+Y TC++ ENE
Sbjct: 346 ---KWTKREADMKAIRNVQLDILSSVAK-----------LVKPGGLLIYSTCTIDQLENE 391
Query: 246 AVIAWILHRHPEVELVQTL 264
VIA + H E + T+
Sbjct: 392 QVIAEFMEAHGEFSIDDTV 410
>gi|359411381|ref|ZP_09203846.1| sun protein [Clostridium sp. DL-VIII]
gi|357170265|gb|EHI98439.1| sun protein [Clostridium sp. DL-VIII]
Length = 438
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 128/247 (51%), Gaps = 42/247 (17%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ +++ L+++ G KV+D+C+APG K THIA ++ +TG ++A D + ++ ++E
Sbjct: 231 VQDESAMVVAPLLELEEGMKVIDLCSAPGGKTTHIAEMLQNTGKVLAFDIHESKLGLIKE 290
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
++L +++++ + D+T++N ES DRIL+D PCSG G ++P
Sbjct: 291 NCERLGITNVEINTNDATKLNPELV----------ESSDRILIDVPCSGIGIIRKKPEIK 340
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ +L + I IQ+++++ +++ L+ GI+VY TC+L+ EENE
Sbjct: 341 WNKTRSDLREIIP----IQREIMENAWQY-----------LRSGGIMVYSTCTLNKEENE 385
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
I W L H + + + + ++ + + G I + N D GFF
Sbjct: 386 ENIDWFLSSHKDCSIKKIF------------IGNQNNLIYNKNGSLTIMPNENMD--GFF 431
Query: 306 ICKLRKK 312
I KL K+
Sbjct: 432 IAKLEKR 438
>gi|315646179|ref|ZP_07899299.1| sun protein [Paenibacillus vortex V453]
gi|315278378|gb|EFU41694.1| sun protein [Paenibacillus vortex V453]
Length = 460
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 123/247 (49%), Gaps = 37/247 (14%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L + +PG +VLD CAAPG K H+ LM D G++IA D + + +
Sbjct: 246 IQDESSMLVAEAIQPEPGMRVLDCCAAPGGKSAHMGELMKDEGSIIANDIHTHKGKLISD 305
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
+L L SI T D+ + + + SFDRILLDAPCSG G ++P
Sbjct: 306 QASRLGLDSIMTVTGDALDLAD---------RFEPASFDRILLDAPCSGLGVIRRKPDLK 356
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
S ++ I A +Q +LL++V LL+ GILVY TC++ ENE
Sbjct: 357 WGKS----EEDIAEIAALQLRLLESVS-----------SLLRPGGILVYSTCTMEPLENE 401
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
V++ L H E + G+ L+ E++++++ G ++P ++D GF+
Sbjct: 402 GVVSAFLEGHAEFAIADD----GLGSLSR----LEEKSLLRGGGVQILPQHYHSD--GFY 451
Query: 306 ICKLRKK 312
I ++ ++
Sbjct: 452 IARISRQ 458
>gi|330915499|ref|XP_003297055.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Pyrenophora teres f. teres
0-1]
gi|311330482|gb|EFQ94850.1| hypothetical protein PTT_07336 [Pyrenophora teres f. teres 0-1]
Length = 745
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/296 (31%), Positives = 137/296 (46%), Gaps = 44/296 (14%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV +E S+V D+ + L P LAGHY L Q
Sbjct: 315 AQTLINRGVQLEPVGKWSKVGLQIFDTQV-PLGATPEYLAGHYILQAASSFLPVMALAPQ 373
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
++VLDM AAPG K TH+A LM +TG + A D +K R L I +L ++ Y
Sbjct: 374 ENERVLDMAAAPGGKTTHLAALMKNTGCIFANDANKDRAKGLIGNIHRLGARNVIVSHY- 432
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLN-LDKKIKSYANI 203
S ++ R+ FDR+LLDAPCSG G + +A+ N + ++
Sbjct: 433 -------SALEFPRV---MGGFDRVLLDAPCSGTGV--IAKDASVKTNKTEADFMKLPHL 480
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
QK+LL A V+ G G +VY TCS+++EENE V+ + L++ P V+LV+T
Sbjct: 481 QKQLLLAAIDSVNHSSKTG-------GYIVYSTCSVTLEENEQVVQYALNKRPNVKLVET 533
Query: 264 LPQLGMKGLA--HKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKKYGEAP 317
G +G + + +R+ P D GFF+ K KK G P
Sbjct: 534 GLTFGKEGFTKIQGKIFHPSMKMTRRYYPHTYNVD------GFFVAKF-KKIGPTP 582
>gi|403217478|emb|CCK71972.1| hypothetical protein KNAG_0I01870 [Kazachstania naganishii CBS
8797]
Length = 629
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 93/296 (31%), Positives = 136/296 (45%), Gaps = 55/296 (18%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ ++V DS + I P LAGHY LD Q
Sbjct: 298 AQSLVNRGVNLQPIGNWTKVGLQIFDSQVPIGAT-PEYLAGHYILQAASSFLPVIALDPQ 356
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDM AAPG K T+I+ +M +TG + A D +K R L I +L ++ YD
Sbjct: 357 ENERILDMAAAPGGKTTYISAMMKNTGCVFANDANKNRTKSLIANIHRLGCTNTIVCNYD 416
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANI- 203
+ FDRILLDAPCSG G + + + + K + I
Sbjct: 417 AREFPKVIG-----------GFDRILLDAPCSGTG----VIGKDQSVKVSRTEKDFIQIP 461
Query: 204 --QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
QK+LL + V KK GI+VY TCS++VEE+EAV+ + L + P V+LV
Sbjct: 462 HLQKQLLLSAIDSVDANS-------KKGGIIVYSTCSVAVEEDEAVVDYALRKRPNVKLV 514
Query: 262 QTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
+T +G +G ++F P + T R N D GFF+ K +K
Sbjct: 515 ETGLLIGKEGFT--------SFRGKKFHPSVKMTRRYYPHTYNVD--GFFVAKFQK 560
>gi|228922619|ref|ZP_04085919.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar huazhongensis BGSC 4BD1]
gi|228837048|gb|EEM82389.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar huazhongensis BGSC 4BD1]
Length = 368
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 118/245 (48%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G VLD CAAPG K THIA + TG +++LD +V +++
Sbjct: 156 IQDESSMLVARALEPNTGDAVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQ 215
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
++L L +++T D+ ++ E+FD+IL+DAPCSGFG + +
Sbjct: 216 QAERLGLENVETKALDARKVQEH---------FANETFDKILVDAPCSGFG--VIRRKPD 264
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 265 IKLGKDKGDSERLSTIQIAILEKIA-----------PLLKQGGRLVYSTCTIEKIENEQV 313
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E TL + + L E + Q + F T GF+I
Sbjct: 314 IEKFLQEHPEFEWDTTLKERMPEKLTPYIDEGQVQILPHYFA-----------TDGFYIA 362
Query: 308 KLRKK 312
LRKK
Sbjct: 363 CLRKK 367
>gi|218899018|ref|YP_002447429.1| sun protein [Bacillus cereus G9842]
gi|402564793|ref|YP_006607517.1| 16S rRNA methyltransferase B [Bacillus thuringiensis HD-771]
gi|423359099|ref|ZP_17336602.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD022]
gi|423561729|ref|ZP_17538005.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
MSX-A1]
gi|218546015|gb|ACK98409.1| sun protein [Bacillus cereus G9842]
gi|401084971|gb|EJP93217.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD022]
gi|401201986|gb|EJR08851.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
MSX-A1]
gi|401793445|gb|AFQ19484.1| 16S rRNA methyltransferase B [Bacillus thuringiensis HD-771]
Length = 444
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 120/245 (48%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G+ VLD CAAPG K THIA + TG +++LD +V +++
Sbjct: 232 IQDESSMLVARALEPNEGETVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQ 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
++L L +++T D+ ++ E+FD+IL+DAPCSGFG + +
Sbjct: 292 QAERLGLENVETKALDARKVQEH---------FSNETFDKILVDAPCSGFG--VIRRKPD 340
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 341 IKLGKDKGDSERLSTIQLAILEKI-----------APLLKQGGRLVYSTCTIEKIENEQV 389
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E T+ + + L+ E + Q + F T GF+I
Sbjct: 390 IDKFLKEHPEFEWDTTIKERMPEKLSPYINEGQVQILPHYFA-----------TDGFYIA 438
Query: 308 KLRKK 312
LRKK
Sbjct: 439 CLRKK 443
>gi|363750754|ref|XP_003645594.1| hypothetical protein Ecym_3284 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889228|gb|AET38777.1| Hypothetical protein Ecym_3284 [Eremothecium cymbalariae
DBVPG#7215]
Length = 606
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 131/293 (44%), Gaps = 49/293 (16%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ ++V DS + I P LAGHY LD Q
Sbjct: 275 AQTLVNRGVNLQPIGTWTKVGLQIFDSQVPIGAT-PEYLAGHYILQAASSFLPVIALDPQ 333
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDM AAPG K T+I+ LM +TG + A D +K R L I +L ++ YD
Sbjct: 334 ENERILDMAAAPGGKTTYISALMKNTGCVFANDANKARTKSLIANIHRLGCTNTIVCNYD 393
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQ 204
+ FDRILLDAPCSG G + + + + K + I
Sbjct: 394 AREFPKVIG-----------GFDRILLDAPCSGTG----VIAKDQSVKVSRTEKDFMQIP 438
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL 264
Q + + D K GI+VY TCS++VEENEAV+ + L + P V+LV +
Sbjct: 439 HLQKQLILSAIDSVDSNS----KTGGIIVYSTCSVAVEENEAVVDYALRKRPNVKLVDSG 494
Query: 265 PQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
+G +G ++F P + T R N D GFF+ K +K
Sbjct: 495 LAIGKEGFT--------SYRGKKFHPSINLTRRYYPHTYNVD--GFFVAKFKK 537
>gi|228954142|ref|ZP_04116170.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar kurstaki str. T03a001]
gi|229071363|ref|ZP_04204586.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
F65185]
gi|229081120|ref|ZP_04213630.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock4-2]
gi|228702164|gb|EEL54640.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock4-2]
gi|228711817|gb|EEL63769.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
F65185]
gi|228805462|gb|EEM52053.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar kurstaki str. T03a001]
Length = 429
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 118/245 (48%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G VLD CAAPG K THIA + TG +++LD +V +++
Sbjct: 217 IQDESSMLVARALEPNTGDAVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQ 276
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
++L L +++T D+ ++ E+FD+IL+DAPCSGFG + +
Sbjct: 277 QAERLGLENVETKALDARKVQEH---------FANETFDKILVDAPCSGFG--VIRRKPD 325
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 326 IKLGKDKGDSERLSTIQIAILEKI-----------APLLKQGGRLVYSTCTIEKIENEQV 374
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E TL + + L E + Q + F T GF+I
Sbjct: 375 IEKFLQEHPEFEWDTTLKERMPEKLTPYIDEGQVQILPHYFA-----------TDGFYIA 423
Query: 308 KLRKK 312
LRKK
Sbjct: 424 CLRKK 428
>gi|427418132|ref|ZP_18908315.1| ribosomal RNA small subunit methyltransferase RsmB [Leptolyngbya
sp. PCC 7375]
gi|425760845|gb|EKV01698.1| ribosomal RNA small subunit methyltransferase RsmB [Leptolyngbya
sp. PCC 7375]
Length = 446
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 110/215 (51%), Gaps = 24/215 (11%)
Query: 47 AVEITNVLSQVPNV-ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIAL 105
A+ I + V + ++ ++Q+ + L + ++ QPG+ V+D C APG K TH+A
Sbjct: 215 AIRIVGPMGNVRQLPGYEAGWWMVQDSSAQLVSYLVNPQPGETVIDACGAPGGKTTHLAE 274
Query: 106 LMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKES 165
+M D G ++ D++ R+ K+ + K+LQL+SI+T + DS I
Sbjct: 275 MMGDQGRVLGCDRTSSRLNKIRQNAKRLQLNSIETVMGDSREHPEFKGI----------- 323
Query: 166 FDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPL 225
DR+LLD PCSG G +A + I +Q++LL+ S DW
Sbjct: 324 ADRVLLDVPCSGLGTLHRHADAR-WRQTPNSIAGLTILQRELLE------SAVDW----- 371
Query: 226 LKKDGILVYCTCSLSVEENEAVIAWILHRHPEVEL 260
+K DG+LVY TC+L +EN+ +I L HP+ ++
Sbjct: 372 VKPDGVLVYSTCTLHPDENQNLIQTFLSDHPDWQI 406
>gi|228960081|ref|ZP_04121745.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar pakistani str. T13001]
gi|229047552|ref|ZP_04193142.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH676]
gi|229146436|ref|ZP_04274807.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BDRD-ST24]
gi|229152064|ref|ZP_04280259.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
m1550]
gi|229192034|ref|ZP_04319004.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
ATCC 10876]
gi|228591585|gb|EEK49434.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
ATCC 10876]
gi|228631413|gb|EEK88047.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
m1550]
gi|228637069|gb|EEK93528.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BDRD-ST24]
gi|228723799|gb|EEL75154.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH676]
gi|228799597|gb|EEM46550.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar pakistani str. T13001]
Length = 429
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 118/245 (48%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G VLD CAAPG K THIA + TG +++LD +V +++
Sbjct: 217 IQDESSMLVARALEPNTGDAVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQ 276
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
++L L +++T D+ ++ E+FD+IL+DAPCSGFG + +
Sbjct: 277 QAERLGLENVETKALDARKVQEH---------FANETFDKILVDAPCSGFG--VIRRKPD 325
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 326 IKLGKDKGDSERLSTIQIAILEKI-----------APLLKQGGRLVYSTCTIEKIENEQV 374
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E TL + + L E + Q + F T GF+I
Sbjct: 375 IEKFLQEHPEFEWDTTLKERMPEKLTPYIDEGQVQILPHYFA-----------TDGFYIA 423
Query: 308 KLRKK 312
LRKK
Sbjct: 424 CLRKK 428
>gi|448084192|ref|XP_004195543.1| Piso0_004938 [Millerozyma farinosa CBS 7064]
gi|359376965|emb|CCE85348.1| Piso0_004938 [Millerozyma farinosa CBS 7064]
Length = 615
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 97/310 (31%), Positives = 137/310 (44%), Gaps = 61/310 (19%)
Query: 24 LPARQRPSLSIYCYALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY--- 80
L AR+R A ++ RGV ++ ++V DS + I P LAGHY
Sbjct: 279 LKARRRD------LAQALVNRGVNLQPIGPWTKVGLQVFDSQVPIGAT-PEYLAGHYILQ 331
Query: 81 ----------LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETI 130
LD Q ++VLDM AAPG K T+I+ LM +TG + A D +K R L I
Sbjct: 332 AASSFLPVMALDPQENERVLDMAAAPGGKTTYISALMKNTGCVFANDANKSRTKSLIANI 391
Query: 131 KKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSF 190
+L + YD+ FDRILLDAPCSG G +
Sbjct: 392 HRLGCKNTIVCNYDAREFPKVIG-----------GFDRILLDAPCSGTG----VIAKDES 436
Query: 191 LNLDKKIKSYANI---QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
+ + + K + I QK+L+ + V G GI+VY TCS++V ENEAV
Sbjct: 437 VKISRTEKDFVQIPHLQKQLILSAIDSVDAHSPTG-------GIIVYSTCSVTVAENEAV 489
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDT 301
+ + L + P V+LV T Q+G +G + F P + T R N D
Sbjct: 490 VDYALRKRPNVKLVSTDLQIGKEGFT--------SYRGKHFNPSISLTRRYYPHTYNVD- 540
Query: 302 IGFFICKLRK 311
GF++ K +K
Sbjct: 541 -GFYVAKFKK 549
>gi|83319809|ref|YP_424196.1| rRNA methyltransferase RsmB (sun protein) [Mycoplasma capricolum
subsp. capricolum ATCC 27343]
gi|83283695|gb|ABC01627.1| rRNA methyltransferase RsmB (sun protein), putative [Mycoplasma
capricolum subsp. capricolum ATCC 27343]
Length = 428
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 129/249 (51%), Gaps = 60/249 (24%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ SIL L+ KVLDMC+APG KLTH+++++ +TG ++A + ++ ++ ++E
Sbjct: 236 IQDKASILVSQILNPSLNTKVLDMCSAPGGKLTHLSMILKNTGNIVANEINESKIKLIKE 295
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
I +L +I D+ +I Q++ FD ILLDAPCSGFG ++P
Sbjct: 296 NITRLNCLNISVINMDARKIK------------QRQEFDYILLDAPCSGFGVFKRKPEIK 343
Query: 186 NANSFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
L D+ ++ S N+Q++LL++ Y LK +G +VY TC+++ +EN
Sbjct: 344 -----LRFDQIQVNSIINLQEELLESAYYN-----------LKNNGEMVYSTCTINQDEN 387
Query: 245 EAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
+ I L++H + +++ Q Q FG + NTD GF
Sbjct: 388 QNQINKFLNKHKD--MIKLYEQ-------------------QIFG-----FEENTD--GF 419
Query: 305 FICKLRKKY 313
+ICKL+K++
Sbjct: 420 YICKLKKQH 428
>gi|423582075|ref|ZP_17558186.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD014]
gi|401212954|gb|EJR19695.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD014]
Length = 444
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 118/245 (48%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G VLD CAAPG K THIA + TG +++LD +V +++
Sbjct: 232 IQDESSMLVARALEPNTGDAVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQ 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
++L L +++T D+ ++ E+FD+IL+DAPCSGFG + +
Sbjct: 292 QAERLGLENVETKALDARKVQEH---------FANETFDKILVDAPCSGFG--VIRRKPD 340
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 341 IKLGKDKGDSERLSTIQIAILEKI-----------APLLKQGGRLVYSTCTIEKIENEQV 389
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E TL + + L E + Q + F T GF+I
Sbjct: 390 IEKFLQEHPEFEWDTTLKERMPEKLTPYIDEGQVQILPHYFA-----------TDGFYIA 438
Query: 308 KLRKK 312
LRKK
Sbjct: 439 CLRKK 443
>gi|304316972|ref|YP_003852117.1| sun protein [Thermoanaerobacterium thermosaccharolyticum DSM 571]
gi|302778474|gb|ADL69033.1| sun protein [Thermoanaerobacterium thermosaccharolyticum DSM 571]
Length = 447
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/254 (29%), Positives = 130/254 (51%), Gaps = 54/254 (21%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ +++ L +PG V+D+C+APG K TH++ LMN+ G ++A D + ++ ++
Sbjct: 235 VQDEGAMIISKVLSPKPGDMVIDVCSAPGGKTTHLSQLMNNKGKIVAFDVYEHKIDLIKR 294
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
++L + ++ V+DST++N S ID D++L D PCSG G ++P
Sbjct: 295 NCRRLGVDNVDAFVFDSTKVN-SEYID---------KADKVLADVPCSGIGIIRKKP--- 341
Query: 186 NANSFLNLDKKIKSYA--------NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC 237
D K+K+Y NIQ ++L + ++V KK G ++Y TC
Sbjct: 342 --------DIKLKNYTKKDFDELNNIQYRILSSSSKYV-----------KKGGYILYSTC 382
Query: 238 SLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR 297
++ EEN ++ L+ + E ++ P L + L H +D+ +Q L+P
Sbjct: 383 TIGKEENINIVDKFLNENKEFKIADIRPFLP-QNLVH---FVDDKGCIQ-----LLPNLN 433
Query: 298 NTDTIGFFICKLRK 311
NTD GFFICKL++
Sbjct: 434 NTD--GFFICKLQR 445
>gi|453084235|gb|EMF12280.1| NOL1/NOP2/sun family putative RNA met [Mycosphaerella populorum
SO2202]
Length = 674
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/296 (31%), Positives = 137/296 (46%), Gaps = 55/296 (18%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV +E S+V + + S L P LAGHY L Q
Sbjct: 302 AHSLINRGVTLEPVGKWSKV-GLQIFESQVPLGATPEYLAGHYILQAASSFLPVMALAPQ 360
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
++VLDM AAPG K TH+A LM +TG + + D +K R L I +L + + Y
Sbjct: 361 EHERVLDMAAAPGGKTTHLAALMRNTGVIFSNDSNKDRAKGLIGNIHRLGVKNTIVCNYS 420
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY---A 201
+ +E K+ FDR+LLDAPCSG G ++ + +K +
Sbjct: 421 A----------LEFPKVMG-GFDRVLLDAPCSGTG----VIAKDASVKTNKTEADFLRLP 465
Query: 202 NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
++QK+LL A V G G +VY TCS++VEENE V+ ++L++ P V+LV
Sbjct: 466 HLQKQLLLAAVDSVDHASKTG-------GYIVYSTCSVTVEENEQVVQYVLNKRPNVKLV 518
Query: 262 QTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
T G +G + +RF P + T R N D GFF+ K +K
Sbjct: 519 PTGLVFGKEGFT--------KFQSKRFYPSMKETRRYYPHAYNVD--GFFVAKFKK 564
>gi|30021953|ref|NP_833584.1| sun protein [Bacillus cereus ATCC 14579]
gi|29897509|gb|AAP10785.1| 16S rRNA m(5)C 967 methyltransferase [Bacillus cereus ATCC 14579]
Length = 444
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 118/245 (48%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G VLD CAAPG K THIA + TG +++LD +V +++
Sbjct: 232 IQDESSMLVARALEPNTGDAVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQ 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
++L L +++T D+ ++ E+FD+IL+DAPCSGFG + +
Sbjct: 292 QAERLGLENVETKALDARKVQEH---------FANETFDKILVDAPCSGFG--VIRRKPD 340
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 341 IKLGKDKGDSERLSTIQIAILEKI-----------APLLKQGGRLVYSTCTIEKIENEQV 389
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E TL + + L E + Q + F T GF+I
Sbjct: 390 IEKFLQEHPEFEWDTTLKERMPEKLTPYIDEGQVQILPHYFA-----------TDGFYIA 438
Query: 308 KLRKK 312
LRKK
Sbjct: 439 CLRKK 443
>gi|206971310|ref|ZP_03232261.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH1134]
gi|218233863|ref|YP_002368666.1| sun protein [Bacillus cereus B4264]
gi|296504360|ref|YP_003666060.1| sun protein [Bacillus thuringiensis BMB171]
gi|423412330|ref|ZP_17389450.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG3O-2]
gi|423431885|ref|ZP_17408889.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG4O-1]
gi|423585726|ref|ZP_17561813.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD045]
gi|423628958|ref|ZP_17604707.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD154]
gi|423641054|ref|ZP_17616672.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD166]
gi|423649728|ref|ZP_17625298.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD169]
gi|423656724|ref|ZP_17632023.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD200]
gi|206734082|gb|EDZ51253.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH1134]
gi|218161820|gb|ACK61812.1| sun protein [Bacillus cereus B4264]
gi|296325412|gb|ADH08340.1| sun protein [Bacillus thuringiensis BMB171]
gi|401104398|gb|EJQ12375.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG3O-2]
gi|401116641|gb|EJQ24479.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG4O-1]
gi|401233072|gb|EJR39568.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD045]
gi|401268503|gb|EJR74551.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD154]
gi|401280115|gb|EJR86037.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD166]
gi|401283008|gb|EJR88905.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD169]
gi|401290465|gb|EJR96159.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD200]
Length = 444
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 118/245 (48%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G VLD CAAPG K THIA + TG +++LD +V +++
Sbjct: 232 IQDESSMLVARALEPNTGDAVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQ 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
++L L +++T D+ ++ E+FD+IL+DAPCSGFG + +
Sbjct: 292 QAERLGLENVETKALDARKVQEH---------FANETFDKILVDAPCSGFG--VIRRKPD 340
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 341 IKLGKDKGDSERLSTIQIAILEKI-----------APLLKQGGRLVYSTCTIEKIENEQV 389
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E TL + + L E + Q + F T GF+I
Sbjct: 390 IEKFLQEHPEFEWDTTLKERMPEKLTPYIDEGQVQILPHYFA-----------TDGFYIA 438
Query: 308 KLRKK 312
LRKK
Sbjct: 439 CLRKK 443
>gi|423635364|ref|ZP_17611017.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD156]
gi|401278115|gb|EJR84051.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD156]
Length = 444
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 118/245 (48%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G VLD CAAPG K THIA + TG +++LD +V +++
Sbjct: 232 IQDESSMLVARALEPNTGDAVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQ 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
++L L +++T D+ ++ E+FD+IL+DAPCSGFG + +
Sbjct: 292 QAERLGLENVETKALDARKVQEH---------FANETFDKILVDAPCSGFG--VIRRKPD 340
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 341 IKLGKDKGDSERLSTIQIAILEKI-----------APLLKQGGRLVYSTCTIEKIENEQV 389
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E TL + + L E + Q + F T GF+I
Sbjct: 390 IEKFLQEHPEFEWDTTLKERMPEKLTPYIDEGQVQILPHYFA-----------TDGFYIA 438
Query: 308 KLRKK 312
LRKK
Sbjct: 439 CLRKK 443
>gi|423426001|ref|ZP_17403032.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG3X2-2]
gi|423437320|ref|ZP_17414301.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG4X12-1]
gi|423503457|ref|ZP_17480049.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HD73]
gi|449090808|ref|YP_007423249.1| ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar kurstaki str. HD73]
gi|401110748|gb|EJQ18647.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG3X2-2]
gi|401120475|gb|EJQ28271.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG4X12-1]
gi|402459678|gb|EJV91415.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HD73]
gi|449024565|gb|AGE79728.1| ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar kurstaki str. HD73]
Length = 444
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 118/245 (48%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G VLD CAAPG K THIA + TG +++LD +V +++
Sbjct: 232 IQDESSMLVARALEPNTGDAVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQ 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
++L L +++T D+ ++ E+FD+IL+DAPCSGFG + +
Sbjct: 292 QAERLGLENVETKALDARKVQEH---------FANETFDKILVDAPCSGFG--VIRRKPD 340
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 341 IKLGKDKGDSERLSTIQIAILEKI-----------APLLKQGGRLVYSTCTIEKIENEQV 389
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E TL + + L E + Q + F T GF+I
Sbjct: 390 IEKFLQEHPEFEWDTTLKERMPEKLTPYIDEGQVQILPHYFA-----------TDGFYIA 438
Query: 308 KLRKK 312
LRKK
Sbjct: 439 CLRKK 443
>gi|373452533|ref|ZP_09544446.1| ribosomal RNA small subunit methyltransferase B [Eubacterium sp.
3_1_31]
gi|371966402|gb|EHO83892.1| ribosomal RNA small subunit methyltransferase B [Eubacterium sp.
3_1_31]
Length = 415
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/250 (30%), Positives = 120/250 (48%), Gaps = 50/250 (20%)
Query: 63 DSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPR 122
+ M +Q+ S L + +D QP +++LD+CAAPG K TH+A LM D G +I D + R
Sbjct: 215 EDGMLSIQDEASQLVAYCVDPQPKERILDVCAAPGTKSTHMAELMQDEGEIICGDIHEHR 274
Query: 123 VTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRP 182
V +++ +LQL SI V D+T++ LQ+ SFDR+L D PCSG+G
Sbjct: 275 VELIQQGADRLQLHSIHPVVMDATKLQG----------LQEASFDRVLCDVPCSGYG--- 321
Query: 183 MFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVE 242
L +K ++Q + + + + + ++K+ GILVY TC+L+ +
Sbjct: 322 ---------VLARKSDIKYHMQSEDMDTLIPLQAAILEKASTMVKQGGILVYSTCTLNKK 372
Query: 243 ENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTI 302
ENE + L +H E LV QR + P + +D
Sbjct: 373 ENEKQVETFLKKHEEFTLVS-----------------------QR---TIFPFEFGSD-- 404
Query: 303 GFFICKLRKK 312
GF+I K+ KK
Sbjct: 405 GFYIAKMEKK 414
>gi|334118913|ref|ZP_08493001.1| sun protein [Microcoleus vaginatus FGP-2]
gi|333459143|gb|EGK87758.1| sun protein [Microcoleus vaginatus FGP-2]
Length = 449
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 95/298 (31%), Positives = 139/298 (46%), Gaps = 59/298 (19%)
Query: 11 LWLDRAGFVSVLRLPA--RQRPSLSIYCYAL--DILFRGVAVEITNV-LSQVPNVA---- 61
LW+++ G +L Q P++ + L I A + N+ S++PN+
Sbjct: 161 LWIEQIGETETEQLCEWFNQSPTIDLRINPLKSSIAQIEAAFKTHNISTSRIPNLPQALR 220
Query: 62 LDSSMGILQNLPSILAG-------------HYLDVQPGQKVLDMCAAPGNKLTHIALLMN 108
L+ S+G +QNLP G H L QPG+ ++D CAAPG K TH A LM
Sbjct: 221 LNGSIGAIQNLPGYSEGWWTIQDSSAQLVTHILGAQPGETIIDACAAPGGKTTHSAELMQ 280
Query: 109 DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDR 168
D GT+ A DK+ R+ KL+E +LQ+ SI+ H DS E + L DR
Sbjct: 281 DEGTIYACDKTASRLKKLKENADRLQMKSIKIHTGDSRHFP-------EFVNLA----DR 329
Query: 169 ILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPL 225
+LLDAPCSG G +RP + + + I+ + +Q +LL FV
Sbjct: 330 VLLDAPCSGLGTLHRRP----DARWRHTPENIQQQSQLQSELLANAATFV---------- 375
Query: 226 LKKDGILVYCTCSLSVEENEAVIAWILHRHPEVEL--------VQTLPQLGMKGLAHK 275
K G+LVY TC++ ENE VI L +P ++ VQ P+ +K H+
Sbjct: 376 -KSGGVLVYATCTIHPLENETVIRSFLDSNPHWQIEPPTIDLPVQPSPEGWVKVWPHR 432
>gi|229129141|ref|ZP_04258114.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BDRD-Cer4]
gi|228654378|gb|EEL10243.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BDRD-Cer4]
Length = 429
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 118/245 (48%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G VLD CAAPG K THIA + TG +++LD +V +++
Sbjct: 217 IQDESSMLVARALEPNTGDAVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQ 276
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
++L L +++T D+ ++ E+FD+IL+DAPCSGFG + +
Sbjct: 277 QAERLGLENVETKALDARKVQEH---------FANETFDKILVDAPCSGFG--VIRRKPD 325
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 326 IKLGKDKGDSERLSTIQIAILEKI-----------APLLKQGGRLVYSTCTIEKIENEQV 374
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E TL + + L E + Q + F T GF+I
Sbjct: 375 IEKFLQEHPEFEWDTTLKERMPEKLTPYIDEGQVQILPHYFA-----------TDGFYIA 423
Query: 308 KLRKK 312
LRKK
Sbjct: 424 CLRKK 428
>gi|326912704|ref|XP_003202687.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
[Meleagris gallopavo]
Length = 613
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 97/294 (32%), Positives = 136/294 (46%), Gaps = 58/294 (19%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV ++ S+ V DSS+ I P LAGHY L Q +
Sbjct: 261 LINRGVNLDPLGKWSKTGLVIYDSSVPIGAT-PEYLAGHYMLQGASSLLPVMALAPQENE 319
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
++LDMC APG K ++IA LM +TG ++A D + R+ + + +L +++
Sbjct: 320 RILDMCCAPGGKTSYIAQLMKNTGMILANDNNAERLRSVVGNLHRLGVTNA--------- 370
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYANIQ 204
S D + FDR+LLDAPCSG G + P +K I A++Q
Sbjct: 371 --VVSNCDGRQFPKVLGGFDRVLLDAPCSGTGVISKDPAIKTNKD----EKDILRCAHLQ 424
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL 264
K+LL + VS G G +VYCTCS++VEENE V+ + L + V LV T
Sbjct: 425 KELLLSAIDSVSATSETG-------GYVVYCTCSITVEENEWVVDYALKKR-NVRLVATG 476
Query: 265 PQLGMKGLAH-KDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
G +G KD +RF P L T R N D GFFI KL+K
Sbjct: 477 LDFGKEGFTRFKD---------RRFHPSLKSTRRFYPHTHNMD--GFFIAKLKK 519
>gi|228987008|ref|ZP_04147134.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|229157441|ref|ZP_04285519.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus ATCC
4342]
gi|228626168|gb|EEK82917.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus ATCC
4342]
gi|228772786|gb|EEM21226.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
Length = 360
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 118/245 (48%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G VLD CAAPG K THIA + TG +++LD +V +++
Sbjct: 148 IQDESSMLVARALEPDEGDVVLDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQ 207
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
++L L +++T D+ ++ E+FD+IL+DAPCSGFG + +
Sbjct: 208 QAERLGLENVETKALDARKVQEH---------FANETFDKILVDAPCSGFG--VIRRKPD 256
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 257 IKLGKDKGDSERLSTIQLAILEKIA-----------PLLKQGGRLVYSTCTIEKIENEQV 305
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E T+ + + L E + Q + F T GF+I
Sbjct: 306 IERFLQEHPEFEWDTTIKERMPEKLGSYIDEGQVQILPHYFA-----------TDGFYIA 354
Query: 308 KLRKK 312
LRKK
Sbjct: 355 CLRKK 359
>gi|226313315|ref|YP_002773209.1| ribosomal RNA small subunit methyltransferase [Brevibacillus brevis
NBRC 100599]
gi|226096263|dbj|BAH44705.1| probable ribosomal RNA small subunit methyltransferase
[Brevibacillus brevis NBRC 100599]
Length = 448
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 131/252 (51%), Gaps = 47/252 (18%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L QPG +VLD CAAPG K THIA +M + G +IA D + +
Sbjct: 235 IQDESSMLVAPALAAQPGMRVLDACAAPGGKTTHIAEMMENRGEIIASDVHPHKRDLIAN 294
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP-MF 184
K+L ++ IQ V D+ +D+ L +FDRILLDAPC+GFG ++P +
Sbjct: 295 AAKRLGITIIQPIVSDA--------LDLPEKALG--TFDRILLDAPCTGFGVIRRKPDLK 344
Query: 185 YNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
+N + +++ A +Q +LL+ + PLL + G++VY TC++ EN
Sbjct: 345 WNKTP-----EDVRAIAQLQYELLKTL-----------APLLAEGGVMVYSTCTIEPAEN 388
Query: 245 EAVIAWILHRHPEV----ELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTD 300
+ ++ + HP+ L Q LP+ ++G H D E A +Q ++P +D
Sbjct: 389 QEIVRRFVEEHPDFVFDDTLAQDLPE-AVRG--HVD---ETGACVQ-----ILPHHFESD 437
Query: 301 TIGFFICKLRKK 312
GFFI +L+++
Sbjct: 438 --GFFIARLKRR 447
>gi|224000816|ref|XP_002290080.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220973502|gb|EED91832.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]
Length = 494
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/261 (32%), Positives = 127/261 (48%), Gaps = 53/261 (20%)
Query: 73 PSILAGHY-------------LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKS 119
P LAGHY L QPG +VLDM AAPG K ++++ LM + G +IA D
Sbjct: 205 PEYLAGHYMLQSAASMCPVMALGPQPGDRVLDMSAAPGGKTSYVSQLMKNKGVVIANDLK 264
Query: 120 KPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG 179
R + +L + ++ T VYD +I +Q+ + SFDRILLDAPCSG G
Sbjct: 265 PERQKATVANLHRLGVRNVVTCVYDGRKI--GNQL--------RNSFDRILLDAPCSGLG 314
Query: 180 QRPMFYNANSFLNLDKKI---KSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT 236
+ + + + + I + A++QK+LL A D K G +VY T
Sbjct: 315 ----VISRDPSVKVQRTIPDVQRCAHLQKELLLAA------IDALNAKSKKGGGCMVYST 364
Query: 237 CSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTD 296
CS++V ENE V+ ++L + +V+LV+T G G + +RF P L T
Sbjct: 365 CSVAVAENEEVVNYLLSKR-DVKLVETGLDFGKPGFTRFE--------HKRFHPSLALTR 415
Query: 297 R------NTDTIGFFICKLRK 311
R N D GF++ K++K
Sbjct: 416 RFYPHVHNMD--GFYVAKIQK 434
>gi|428315935|ref|YP_007113817.1| sun protein [Oscillatoria nigro-viridis PCC 7112]
gi|428239615|gb|AFZ05401.1| sun protein [Oscillatoria nigro-viridis PCC 7112]
Length = 446
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/295 (30%), Positives = 134/295 (45%), Gaps = 53/295 (17%)
Query: 11 LWLDRAGFVSVLRLPA--RQRPSLSIYCYAL--DILFRGVAVEITNV-LSQVPNVA---- 61
LW+++ G +L Q P++ + L I A + N+ S++P++
Sbjct: 161 LWIEQIGETETEQLCEWFNQSPTIDLRINPLKSSIAQIEAAFQTHNISTSRIPHLPQALR 220
Query: 62 LDSSMGILQNLPSILAG-------------HYLDVQPGQKVLDMCAAPGNKLTHIALLMN 108
L+ S+G +QNLP G H L QPG+ ++D CAAPG K TH A LM
Sbjct: 221 LNGSIGAIQNLPGYSEGWWTIQDSSAQLVTHLLAPQPGETIIDACAAPGGKTTHSAELMQ 280
Query: 109 DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDR 168
DTGT+ A DK+ R+ KL+E +LQ+ SI+ H DS E + L DR
Sbjct: 281 DTGTIYACDKTASRLKKLKENADRLQMKSIKIHTGDSRHFP-------EFVNLA----DR 329
Query: 169 ILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKK 228
+LLDAPCSG G L ++ + + +Q + S +K
Sbjct: 330 VLLDAPCSGLG------------TLHRRADARWRHTPENIQQQSQLQSELLANAATFVKS 377
Query: 229 DGILVYCTCSLSVEENEAVIAWILHRHPEVEL--------VQTLPQLGMKGLAHK 275
G+LVY TC++ ENE VI L +P ++ VQ P+ +K H+
Sbjct: 378 GGVLVYATCTIHPLENETVIRSFLDSNPHWQIEPPTIDLPVQPSPEGWVKVWPHR 432
>gi|401426108|ref|XP_003877538.1| putative nucleolar protein [Leishmania mexicana MHOM/GT/2001/U1103]
gi|322493784|emb|CBZ29073.1| putative nucleolar protein [Leishmania mexicana MHOM/GT/2001/U1103]
Length = 625
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 96/296 (32%), Positives = 141/296 (47%), Gaps = 66/296 (22%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RG+ VE S+V +S++ I + LAGHY L Q
Sbjct: 277 LVKRGMNVEPLEKWSKVGLQVFESNVPIAGTI-EYLAGHYMLQAAASFLPVMALAPQEND 335
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM AAPG K T+IA LM +TG L A D S+PR L +++L +++ YD T
Sbjct: 336 RVLDMSAAPGGKTTYIAQLMKNTGVLFANDVSEPRCKSLNANLQRLGVTNCIVTNYDGT- 394
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKS---YANIQ 204
ER+ +FDR+LLDAPCSG G ++ DK IK+ Y +IQ
Sbjct: 395 -------GYERV---MRNFDRVLLDAPCSGTG----------IISRDKSIKTSKQYEDIQ 434
Query: 205 K--KLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQ 262
+ +L +A+ I K G +VY TCS VEE+EA++ + L R ++++V+
Sbjct: 435 RASQLQRALL-------LGAIDACKIGGYVVYSTCSFLVEEDEAIVDFALRRR-DLQVVE 486
Query: 263 TLPQLGMKGLA-------HKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
G G H LE + +R+ P + D GFFICK++K
Sbjct: 487 MGLPFGRPGFTKYRHHRYHNSLE-----LSRRYFPHVHNMD------GFFICKMKK 531
>gi|212639278|ref|YP_002315798.1| Sun, tRNA and rRNA cytosine-C5-methylase fused to uncharacterized
domain [Anoxybacillus flavithermus WK1]
gi|212560758|gb|ACJ33813.1| Sun, tRNA and rRNA cytosine-C5-methylase fused to uncharacterized
domain [Anoxybacillus flavithermus WK1]
Length = 457
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 89/326 (27%), Positives = 147/326 (45%), Gaps = 45/326 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q ++ L PG++VLD+CAAPG K T +A LMN+ G L+A + RV L E
Sbjct: 90 IQEPSAMFVAEVLAPSPGERVLDLCAAPGGKTTQLAALMNNEGFLLANEIHPKRVKALSE 149
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
I++L +++ V + T S + FD+IL+DAPCSG G A
Sbjct: 150 NIERLGITNAV--VTNETPEKLSETFE--------GFFDKILVDAPCSGEGMFRKDEEAI 199
Query: 189 SFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVI 248
F +L+ ++ A Q+ +L Y+ +L + G LVY TC+ S EENE +I
Sbjct: 200 QFWSLE-HVQKCAQTQRHILSCAYK-----------MLSEGGTLVYSTCTFSPEENEQII 247
Query: 249 AWILHRHPEVELVQTLPQLGMK-GLAH-KDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFI 306
W L + ++EL+ + G++ G++H + + A R P + + G F+
Sbjct: 248 DWFLATYEDMELIPIEKKHGIQPGVSHWTNTHRGNIAHTARLWPHHLKGE------GHFV 301
Query: 307 CKLRKKYGEAPEIYIHPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQ------------PC 354
K+RK+ Y + C V + ++ ++H +Q + P
Sbjct: 302 AKMRKR---GSTKYWNGKTVACNVPKVMWHDYETFMNHTIQTTIKGTMYAFGAHLFALPH 358
Query: 355 ALAVLRGADVFAPGVLAMPLGKNSYK 380
+ L G V PG+ KN ++
Sbjct: 359 SCPRLDGLKVVRPGLHIGEWKKNRFE 384
>gi|452841420|gb|EME43357.1| hypothetical protein DOTSEDRAFT_72685 [Dothistroma septosporum
NZE10]
Length = 660
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 96/302 (31%), Positives = 140/302 (46%), Gaps = 56/302 (18%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV +E S+V + + S L P LAGHY L Q
Sbjct: 305 AHSLINRGVTLEPVGKWSKV-GLQIFESQVPLGATPEYLAGHYILQAASSFLPVMALAPQ 363
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
++VLDM AAPG K TH+A LM +TG + + D +K R L I +L +
Sbjct: 364 EHERVLDMAAAPGGKTTHLAALMRNTGCIFSNDANKDRAKGLIGNIHRLGVK-------- 415
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY---A 201
+T + S + R+ FDR+LLDAPCSG G ++ + +K +
Sbjct: 416 NTIVCNYSALQFPRV---MGGFDRVLLDAPCSGTG----VIAKDASVKTNKTEADFLRLP 468
Query: 202 NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
++QK+LL A V G G +VY TCS++VEE+E V+ ++L++ P ++LV
Sbjct: 469 HLQKQLLLAAVDSVDHASKTG-------GFIVYSTCSVTVEEDEQVVQYVLNKRPNIKLV 521
Query: 262 QTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRKKYGE 315
T G +G + +RF P + T R N D GFF+ KL KK G
Sbjct: 522 PTGLVFGKEGFT--------RYQSKRFHPSMKETRRYYPHAYNVD--GFFVAKL-KKTGP 570
Query: 316 AP 317
P
Sbjct: 571 TP 572
>gi|346644842|ref|NP_001231175.1| NOP2 nucleolar protein homolog [Sus scrofa]
Length = 821
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 97/294 (32%), Positives = 137/294 (46%), Gaps = 52/294 (17%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+ V DSS+ I P LAGHY L Q
Sbjct: 324 AQALINRGVNLDPLGKWSKTGLVVYDSSVPIGAT-PEYLAGHYMLQGASSMLPVMALAPQ 382
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDMC APG K ++IA LM +TG ++A D + R+ + + +L +++ YD
Sbjct: 383 EHERILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISNYD 442
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANI 203
+ FDR+LLDAPCSG G + + N D+K I A++
Sbjct: 443 GRQFPKVVG-----------GFDRVLLDAPCSGTGI--ISKDPAVKTNKDEKDILRCAHL 489
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
QK+LL + VS G G LVYCTCS++VEENE V+ + L + V LV T
Sbjct: 490 QKELLLSAIDSVSATSKTG-------GYLVYCTCSITVEENEWVVDYALKKR-NVRLVPT 541
Query: 264 LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
G +G + +RF P L T R N D GFFI K +K
Sbjct: 542 GLDFGQEGFT--------RFRERRFHPTLRSTRRFYPHTHNMD--GFFIAKFKK 585
>gi|20093483|ref|NP_613330.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
gi|19886312|gb|AAM01260.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
Length = 444
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 132/276 (47%), Gaps = 52/276 (18%)
Query: 42 LFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLT 101
L R V EI V ++ A + Q+ S H LD QPG+ V+D+CAAPG K
Sbjct: 214 LLRVVEEEIPIVRTE----AWKEGLVFTQDKASAAVAHVLDPQPGEFVVDLCAAPGGKTL 269
Query: 102 HIALLMNDTGTLIALDKSKPRVTKLEETI--KKLQLSSIQTHVYDSTRINTSSQIDIERM 159
H LM G ++A+DKS R+ + E + +++ ++ D+ I ++D
Sbjct: 270 HALCLMEGEGEILAVDKSDWRLDAMREKLAWQRVPDGVVELRCADAREI--PEELD---- 323
Query: 160 KLQKESFDRILLDAPCSGFG---QRP-MFYNANSFLNLDKKIKSYANIQKKLLQAVYRFV 215
E DR ++D PCSG G +RP +N K+++ YA +Q +LL+A
Sbjct: 324 ----EEADRAIVDPPCSGMGSVQKRPETRWNVTK-----KRVRRYAKLQSELLEA----- 369
Query: 216 SLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHK 275
I ++ GI+VY TC+L++ ENE VI + R+ +V + + Q G +GL
Sbjct: 370 ------AIKTVRPGGIVVYSTCTLTINENENVIRRVARRY-DVTIEKVNLQFGRRGLVPG 422
Query: 276 DLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
+RF P TDR GFFI KLRK
Sbjct: 423 ---------TRRFYP---HTDRCQ---GFFIAKLRK 443
>gi|448454964|ref|ZP_21594366.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum lipolyticum
DSM 21995]
gi|445814344|gb|EMA64309.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum lipolyticum
DSM 21995]
Length = 310
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 122/249 (48%), Gaps = 30/249 (12%)
Query: 74 SILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKL 133
S+L G LD QPG++V D CAAPG+K T IA M+D GT++A D + R++ L ++L
Sbjct: 87 SVLPGLALDPQPGERVWDACAAPGSKTTQIADAMDDEGTVVANDNNLGRLSALRHNAERL 146
Query: 134 QLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNL 193
+++ D+ +T L + FDR L+DAPCS G + L
Sbjct: 147 GITNAIVTNQDARNFSTK--------PLAFDEFDRALVDAPCSCEGTCRKNPDVVDQWTL 198
Query: 194 DKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILH 253
D + + A IQK +L + + + G +VY TC+ + EENEAV+ +L
Sbjct: 199 D-HVHAVAGIQKGILA-----------RAVQATRPGGTVVYSTCTFAPEENEAVLDHVLG 246
Query: 254 RHPEVELVQ-TLPQLGMKGLAHKDLEAEDQAVMQ--RFGPPLIPTDRNTDTIGFFICKLR 310
+ E+V+ LP + G+ D E D++V + R P + DT GFF KLR
Sbjct: 247 EE-DCEIVEFDLPLDTVPGVTEWDGETYDESVTRAHRVYP------HHNDTGGFFCAKLR 299
Query: 311 KKYGEAPEI 319
E E+
Sbjct: 300 VGGDENTEV 308
>gi|333897220|ref|YP_004471094.1| sun protein [Thermoanaerobacterium xylanolyticum LX-11]
gi|333112485|gb|AEF17422.1| sun protein [Thermoanaerobacterium xylanolyticum LX-11]
Length = 447
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 126/246 (51%), Gaps = 38/246 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ +++ L P ++D+C+APG K THI+ LMN+ G +IA D + ++ +
Sbjct: 235 IQDEGAMIISKVLSPNPDDLIIDVCSAPGGKTTHISQLMNNKGKVIAFDIHEHKIDLIRM 294
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
K+L ++++ +V+DST+IN IE+ D++L D PC+G G ++P
Sbjct: 295 NCKRLGVNNVDAYVFDSTKINEKY---IEKA-------DKVLADVPCTGIGIIRKKPDIK 344
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
N D+ IK NIQ +L + ++V KK G ++Y TC++ EEN
Sbjct: 345 LKNY---TDEDIKKLNNIQYNILSSSSKYV-----------KKGGYILYSTCTIGREENM 390
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
+I L + E+ P L K LA + +++ +Q L+P NTD GFF
Sbjct: 391 NIIDRFLGENKNFEISDIRPLLPDK-LAS---QVDNKGYLQ-----LLPNINNTD--GFF 439
Query: 306 ICKLRK 311
ICKL++
Sbjct: 440 ICKLKR 445
>gi|256384049|gb|ACU78619.1| ribosomal RNA small subunit methyltransferase B [Mycoplasma
mycoides subsp. capri str. GM12]
gi|256384881|gb|ACU79450.1| ribosomal RNA small subunit methyltransferase B [Mycoplasma
mycoides subsp. capri str. GM12]
gi|296455325|gb|ADH21560.1| ribosomal RNA small subunit methyltransferase B [synthetic
Mycoplasma mycoides JCVI-syn1.0]
Length = 419
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 128/249 (51%), Gaps = 60/249 (24%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ SIL L+ KVLDMC+APG KLTH+++++ +TG ++ + ++ ++ ++E
Sbjct: 227 IQDKASILVSQILNPSLNTKVLDMCSAPGGKLTHLSMILKNTGNIVGNEINESKIKLIKE 286
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
I +L +I D+ +I QK+ FD ILLDAPCSGFG ++P
Sbjct: 287 NINRLNCLNISVINMDARKIK------------QKQEFDYILLDAPCSGFGVFKRKPEIK 334
Query: 186 NANSFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
L D+ ++ S N+Q++LL++ Y LK +G +VY TC+++ +EN
Sbjct: 335 -----LRFDQIQVNSIINLQEELLESAYYN-----------LKNNGEMVYSTCTINQDEN 378
Query: 245 EAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
+ I L++H + +++ Q Q FG + NTD GF
Sbjct: 379 QNQINKFLNKHKD--MIKLYEQ-------------------QIFG-----FEENTD--GF 410
Query: 305 FICKLRKKY 313
+ICKL+K++
Sbjct: 411 YICKLKKQH 419
>gi|452982279|gb|EME82038.1| hypothetical protein MYCFIDRAFT_165230 [Pseudocercospora fijiensis
CIRAD86]
Length = 658
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 91/289 (31%), Positives = 135/289 (46%), Gaps = 47/289 (16%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V + + S L P LAGHY L Q +
Sbjct: 301 LINRGVTLEPVGKWSKV-GLQIFESQVPLGATPEYLAGHYILQAASSFLPAMALAPQEHE 359
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM AAPG K TH+A LM +TG + + D +K R L I +L + + Y +
Sbjct: 360 RVLDMAAAPGGKTTHLAALMRNTGVIFSNDSNKDRAKGLIGNIHRLGVKNTVVCNYSA-- 417
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY---ANIQ 204
+E K+ FDR+LLDAPCSG G ++ + +K + ++Q
Sbjct: 418 --------LEFPKVMG-GFDRVLLDAPCSGTG----VIAKDASVKTNKTPDDFLRLPHLQ 464
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL 264
K+LL A V G G +VY TCS++VEENE V+ ++L++ P V+LV T
Sbjct: 465 KQLLLAAVDSVDHASKTG-------GYIVYSTCSVTVEENEQVVQYVLNKRPNVKLVPTG 517
Query: 265 PQLGMKGLAHKDLEAEDQAVMQ--RFGPPLIPTDRNTDTIGFFICKLRK 311
G +G + Q++ + R+ P D GFF+ K RK
Sbjct: 518 LAFGKEGFVKYQAKRFHQSMKETRRYYPHAYNVD------GFFVAKFRK 560
>gi|331703221|ref|YP_004399908.1| Sun family protein [Mycoplasma mycoides subsp. capri LC str. 95010]
gi|328801776|emb|CBW53929.1| Sun family protein [Mycoplasma mycoides subsp. capri LC str. 95010]
Length = 423
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/247 (30%), Positives = 127/247 (51%), Gaps = 60/247 (24%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ SIL L+ KVLDMC+APG KLTH+++++ +TG ++A + ++ ++ ++E
Sbjct: 227 IQDKASILVSQILNPSLNTKVLDMCSAPGGKLTHLSMILKNTGNIVANEINESKIKLIKE 286
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
I +L +I D+ +I QK+ FD ILLDAPCSGFG ++P
Sbjct: 287 NINRLNCLNISLTNMDARKIK------------QKQEFDYILLDAPCSGFGVFKRKPEIK 334
Query: 186 NANSFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
L D+ ++ + N+Q++LL++ Y LK +G +VY TC+++ +EN
Sbjct: 335 -----LRFDQTQVNNIINLQEELLESAYYN-----------LKNNGEMVYSTCTINQDEN 378
Query: 245 EAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
+ I L++H + +++ Q Q FG + NTD GF
Sbjct: 379 QNQINKFLNKHKD--MIKLYEQ-------------------QIFG-----FEENTD--GF 410
Query: 305 FICKLRK 311
+ICKL+K
Sbjct: 411 YICKLKK 417
>gi|448079709|ref|XP_004194444.1| Piso0_004938 [Millerozyma farinosa CBS 7064]
gi|359375866|emb|CCE86448.1| Piso0_004938 [Millerozyma farinosa CBS 7064]
Length = 609
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 84/261 (32%), Positives = 117/261 (44%), Gaps = 54/261 (20%)
Query: 73 PSILAGHY-------------LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKS 119
P LAGHY LD Q ++VLDM AAPG K T+I+ LM +TG + A D +
Sbjct: 315 PEYLAGHYILQAASSFLPVMALDPQENERVLDMAAAPGGKTTYISALMKNTGCVFANDAN 374
Query: 120 KPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG 179
K R L I +L + YD+ FDR+LLDAPCSG G
Sbjct: 375 KSRTKSLIANIHRLGCKNTIVCNYDAREFPKVIG-----------GFDRVLLDAPCSGTG 423
Query: 180 QRPMFYNANSFLNLDKKIKSYANI---QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT 236
+ + + + K + I QK+L+ + V G GI+VY T
Sbjct: 424 ----VIAKDESVKISRTEKDFVQIPHLQKQLILSAIDSVDAHSPTG-------GIIVYST 472
Query: 237 CSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTD 296
CS++V ENEAV+ + L + P V+LV T Q+G +G + F P + T
Sbjct: 473 CSVTVAENEAVVDYALRKRPNVKLVSTDLQIGKEGFT--------SYRGKHFNPSISLTR 524
Query: 297 R------NTDTIGFFICKLRK 311
R N D GF++ K +K
Sbjct: 525 RYYPHTYNVD--GFYVAKFKK 543
>gi|426371345|ref|XP_004052607.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 isoform 2
[Gorilla gorilla gorilla]
Length = 808
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 138/294 (46%), Gaps = 52/294 (17%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+ V DSS+ I P LAGHY L Q
Sbjct: 321 AQALINRGVNLDPLGKWSKTGLVVYDSSVPIGAT-PEYLAGHYMLQGASSMLPVMALAPQ 379
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDMC APG K +++A LM +TG ++A D + R+ + + +L +++ YD
Sbjct: 380 EHERILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYD 439
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANI 203
+ T FDR+LLDAPCSG G + + N D+K I A++
Sbjct: 440 GRQFPTVVG-----------GFDRVLLDAPCSGTGV--ISKDPAVKTNKDEKDILRCAHL 486
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
QK+LL + V+ G G LVYCTCS++VEENE V+ + L + V LV T
Sbjct: 487 QKELLLSAIDSVNATSKTG-------GYLVYCTCSITVEENEWVVDYALKKR-NVRLVPT 538
Query: 264 LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
G +G + +RF P L T R N D GFFI K +K
Sbjct: 539 GLDFGQEGFT--------RFRERRFHPSLRSTRRFYPHTHNMD--GFFIAKFKK 582
>gi|404494920|ref|YP_006719026.1| 16S rRNA (5-methyl-C967)-methyltransferase [Geobacter
metallireducens GS-15]
gi|418067574|ref|ZP_12704913.1| sun protein [Geobacter metallireducens RCH3]
gi|78192548|gb|ABB30315.1| 16S rRNA (5-methyl-C967)-methyltransferase [Geobacter
metallireducens GS-15]
gi|373558572|gb|EHP84908.1| sun protein [Geobacter metallireducens RCH3]
Length = 446
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 108/219 (49%), Gaps = 31/219 (14%)
Query: 45 GVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIA 104
GV + ++ +P A + +Q+ S LA +LD QPG+++LD+CAAPG K T++A
Sbjct: 216 GVRILSRTAVTTLPGFA--EGLFTVQDESSQLAAFFLDPQPGERILDVCAAPGGKATYLA 273
Query: 105 LLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE 164
LM + G ++A D S ++ + E +L + I+T D+T+ +
Sbjct: 274 QLMENRGEVLACDISAKKLRLVAEAAARLGIGIIRTMAGDATKPGAG-----------EP 322
Query: 165 SFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQ 221
FDRILLDAPCSGFG + P + + A Q+ +L AV
Sbjct: 323 PFDRILLDAPCSGFGVIRRNP----EGKWWKTPDDLARLAATQRNILAAV---------- 368
Query: 222 GIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVEL 260
P L+ G+L+Y TCS V E+E V+ L RH + L
Sbjct: 369 -APRLRPGGVLLYSTCSTMVAEDEDVVDDFLSRHEDFVL 406
>gi|47569491|ref|ZP_00240171.1| sun protein [Bacillus cereus G9241]
gi|47553820|gb|EAL12191.1| sun protein [Bacillus cereus G9241]
Length = 444
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 119/245 (48%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G VLD CAAPG K THIA + TG +++LD +V +++
Sbjct: 232 IQDESSMLVARALEPDEGDVVLDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQ 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
++L L +++T D+ ++ E+FD+IL+DAPCSGFG + +
Sbjct: 292 QAERLGLENVETKALDARKVQEH---------FANETFDKILVDAPCSGFG--VIRRKPD 340
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 341 IKLGKDKGDSERLSTIQLAILEKI-----------APLLKQGGRLVYSTCTIEKIENEQV 389
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E T+ + + L E + Q + P TD GF+I
Sbjct: 390 IERFLQEHPEFEWDTTIKERMPEKLGSYIDEGQVQIL-----PHYFATD------GFYIA 438
Query: 308 KLRKK 312
LRKK
Sbjct: 439 CLRKK 443
>gi|403386878|ref|ZP_10928935.1| 16S rRNA methyltransferase B [Clostridium sp. JC122]
Length = 442
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 131/269 (48%), Gaps = 44/269 (16%)
Query: 47 AVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALL 106
A+ I N + N +Q+ ++L +++ +VLD+C+APG K THI+ +
Sbjct: 212 AIRIVNGRNIEDNRLFKEGYVTVQDESAMLVAPSMELNSDSRVLDLCSAPGGKTTHISEI 271
Query: 107 MNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESF 166
M++TG ++A D + +++ +++ K+L +++I+ D++ + + + K +
Sbjct: 272 MDNTGEVLAFDIHENKLSLIKDNAKRLNINNIKCETLDAS---------VYKKEFNKYA- 321
Query: 167 DRILLDAPCSGFG---QRPMF-YNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQG 222
DR+L+D PCSG G ++P Y N K++KS IQ+ ++ ++V
Sbjct: 322 DRVLIDVPCSGLGIIRKKPEIKYTKNQ-----KELKSIVEIQRSIMNNAAKYV------- 369
Query: 223 IPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQ 282
KKDG+++Y TC+L+ EENE I W L HP +L D
Sbjct: 370 ----KKDGVILYSTCTLNKEENEKNIQWFLKNHPNFKLEPLF------------FGNVDN 413
Query: 283 AVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
+ G I ++ D GFFI K+R+
Sbjct: 414 IIYGDSGEVTILPNKFMD--GFFIVKIRR 440
>gi|338813384|ref|ZP_08625513.1| 16S rRNA methyltransferase B [Acetonema longum DSM 6540]
gi|337274743|gb|EGO63251.1| 16S rRNA methyltransferase B [Acetonema longum DSM 6540]
Length = 450
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 95/321 (29%), Positives = 140/321 (43%), Gaps = 56/321 (17%)
Query: 12 WLDRAGFVSVLRLPARQR--PSLSIYCYAL-----DILFRGVAVEITN----------VL 54
WL R GF L A P LS+ L D+L R A + T V
Sbjct: 158 WLTRYGFAFCEELCASNNLTPPLSLRTNTLKISRDDLLDRLTAEQATATPSDWTPEGLVC 217
Query: 55 SQVPNVA----LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDT 110
++ P +A L + +Q+ S+L H L QPG+ ++D C APG K THIA LMN++
Sbjct: 218 TEHPALASMPSLQEGLFQVQDESSMLVAHVLGPQPGEFIIDACGAPGGKSTHIAALMNNS 277
Query: 111 GTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRIL 170
G ++A D + ++ + E K+L + ++T D+ ++N+ L K DR+L
Sbjct: 278 GKVLATDLYEHKLALIRENAKRLGIHCLETRQMDAVKLNS----------LYKNQADRVL 327
Query: 171 LDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDG 230
+DAPCSG G L +K S +KLL+A+ S +K G
Sbjct: 328 VDAPCSGLGV------------LRRKPDSRWRKNEKLLRALPDLQSAILHSSADCVKPGG 375
Query: 231 ILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGP 290
ILVY TC++ EEN+ V+ L + L G E M + P
Sbjct: 376 ILVYSTCTIEPEENQDVVNGFLASRRDFVLEHA-------GRLMPVPRPEQPEKMMQLFP 428
Query: 291 PLIPTDRNTDTIGFFICKLRK 311
+ D GFFI +LR+
Sbjct: 429 HIDGVD------GFFIARLRR 443
>gi|448525808|ref|XP_003869206.1| Nop2 protein [Candida orthopsilosis Co 90-125]
gi|380353559|emb|CCG23070.1| Nop2 protein [Candida orthopsilosis]
Length = 626
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 90/269 (33%), Positives = 126/269 (46%), Gaps = 44/269 (16%)
Query: 55 SQVPNVALDSSMG---ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTG 111
SQVP A + ILQ S L LD Q +++LDM AAPG K T+I+ LM +TG
Sbjct: 324 SQVPIGATPEYLAGQYILQAASSFLPVIALDPQENERILDMAAAPGGKTTYISALMKNTG 383
Query: 112 TLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILL 171
+ A D +K R L I +L + YD+ + R+ FDRILL
Sbjct: 384 CVFANDANKARTKSLIANIHRLGCKNTIVCNYDAR--------EFPRV---IGGFDRILL 432
Query: 172 DAPCSGFGQRPMFYNANSFLNLDKKIKSYANI---QKKLLQAVYRFVSLFDWQGIPLLKK 228
DAPCSG G + + + + K + I QK+LL + V G
Sbjct: 433 DAPCSGTG----VIAKDESVKVSRTEKDFMQIPHLQKQLLLSAIDSVDANSSTG------ 482
Query: 229 DGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRF 288
G++VY TCS++VEENEAV+ + L + P V+LV+T +G +G + F
Sbjct: 483 -GVIVYSTCSVAVEENEAVVDYALRKRPNVKLVETGLAIGKEGFT--------SYRGKHF 533
Query: 289 GPPLIPTDR------NTDTIGFFICKLRK 311
P L T R N D GF++ K +K
Sbjct: 534 NPKLSLTRRYYPHIYNVD--GFYVAKFKK 560
>gi|256811186|ref|YP_003128555.1| RNA methylase [Methanocaldococcus fervens AG86]
gi|256794386|gb|ACV25055.1| RNA methylase, NOL1/NOP2/sun family [Methanocaldococcus fervens
AG86]
Length = 265
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 126/242 (52%), Gaps = 36/242 (14%)
Query: 70 QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEET 129
Q++ S++ L+ + +LDMCAAPG K TH+A LM + GT++A++ SK RV L+
Sbjct: 59 QSISSMIPPIVLNPKEQDFILDMCAAPGGKTTHLAQLMKNNGTIVAVEISKTRVKALKSN 118
Query: 130 IKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANS 189
I ++ V ++ IN + + + + FD+ILLDAPCSG + +
Sbjct: 119 INRM-------GVLNTIIINADMRKYKDYLLKNEIFFDKILLDAPCSGNIIK------DK 165
Query: 190 FLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIA 249
N+ K+ Y ++++K L + GI LLK+ G LVY TCS+ +EENE VI
Sbjct: 166 DRNVSKEDIKYCSLRQKELIDI----------GIDLLKEGGELVYSTCSMEIEENEEVIR 215
Query: 250 WILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKL 309
+IL + +VEL++ + + KG+ K E R PP P FFI KL
Sbjct: 216 YILQKRDDVELIK-INKDEFKGINVKSGYIEGTL---RVFPPNEP---------FFIAKL 262
Query: 310 RK 311
RK
Sbjct: 263 RK 264
>gi|336179788|ref|YP_004585163.1| Fmu (Sun) domain-containing protein [Frankia symbiont of Datisca
glomerata]
gi|334860768|gb|AEH11242.1| Fmu (Sun) domain protein [Frankia symbiont of Datisca glomerata]
Length = 326
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 109/237 (45%), Gaps = 38/237 (16%)
Query: 87 QKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDST 146
+ ++D+CAAPG K HIA L+ + L A D PR+ KL ++ + +T + +
Sbjct: 119 ESIIDLCAAPGGKTAHIAALVGNEARLWANDGIAPRLEKLRAVTRQFHVRLAETSCHPAQ 178
Query: 147 RINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKK 206
+ K E FDR+LLDA CSG G + +A ++++ Y +Q+K
Sbjct: 179 YAD----------KFITERFDRVLLDAQCSGEGLVDLRSSAALRYWTEQRVIDYGWLQRK 228
Query: 207 LLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHP------EVEL 260
+L A R LL+ G+LVY TC+ EENEA ++++L HP EV++
Sbjct: 229 MLVAACR-----------LLRPGGVLVYSTCTFGPEENEAPLSYLLRHHPVEVCPIEVDI 277
Query: 261 VQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR---NTDTIGFFICKLRKKYG 314
P GL H E F P L R GFF+CKLRK G
Sbjct: 278 DGFAPDAWRPGLRHWRTET--------FHPALADARRILPGPAFEGFFVCKLRKLPG 326
>gi|426371343|ref|XP_004052606.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 isoform 1
[Gorilla gorilla gorilla]
Length = 812
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 138/294 (46%), Gaps = 52/294 (17%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+ V DSS+ I P LAGHY L Q
Sbjct: 325 AQALINRGVNLDPLGKWSKTGLVVYDSSVPIGAT-PEYLAGHYMLQGASSMLPVMALAPQ 383
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDMC APG K +++A LM +TG ++A D + R+ + + +L +++ YD
Sbjct: 384 EHERILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYD 443
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANI 203
+ T FDR+LLDAPCSG G + + N D+K I A++
Sbjct: 444 GRQFPTVVG-----------GFDRVLLDAPCSGTGV--ISKDPAVKTNKDEKDILRCAHL 490
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
QK+LL + V+ G G LVYCTCS++VEENE V+ + L + V LV T
Sbjct: 491 QKELLLSAIDSVNATSKTG-------GYLVYCTCSITVEENEWVVDYALKKR-NVRLVPT 542
Query: 264 LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
G +G + +RF P L T R N D GFFI K +K
Sbjct: 543 GLDFGQEGFT--------RFRERRFHPSLRSTRRFYPHTHNMD--GFFIAKFKK 586
>gi|294675688|ref|YP_003576303.1| tRNA/rRNA cytosine-C5-methylase [Rhodobacter capsulatus SB 1003]
gi|294474508|gb|ADE83896.1| tRNA/rRNA cytosine-C5-methylase [Rhodobacter capsulatus SB 1003]
Length = 442
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 89/277 (32%), Positives = 127/277 (45%), Gaps = 41/277 (14%)
Query: 45 GVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIA 104
G+ V L+ +P L + +Q+ S L +D +PG +V+D CA G K IA
Sbjct: 198 GIRVSARLSLAHLPG--LKTGEIEIQDEGSQLVALLVDARPGDRVVDFCAGAGGKTLAIA 255
Query: 105 LLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE 164
M + G +IA D ++ R+ + E ++ L + +T + SS+ D +K K
Sbjct: 256 AQMQNKGRIIACDVNEGRLKRCAERARRAGLQNAETRLL-------SSETD-RWVKRHKA 307
Query: 165 SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIP 224
FDR+L+DAPCSG G +A ++ + + A +Q ++L + R V
Sbjct: 308 GFDRVLVDAPCSGTGTWRRNPDARWRSPQEQGLDNLAALQGRILASAARLV--------- 358
Query: 225 LLKKDGILVYCTCSLSVEENEAVIAWILHRHPE---VELVQTLPQLGMKGLAHKDLEAED 281
K G LVY TCSL EENE +A L HPE V L + PQL G AH D +
Sbjct: 359 --KPGGRLVYATCSLLSEENEDRVAAFLAAHPEFSVVPLAEVAPQL--TGSAHPDYLS-- 412
Query: 282 QAVMQRFGPPLIPTDRNTDTIGFFICKL-RKKYGEAP 317
L P +TD GFF L R EAP
Sbjct: 413 ----------LTPARHDTD--GFFAAVLQRAAVAEAP 437
>gi|389633125|ref|XP_003714215.1| nucleolar protein NOP2 [Magnaporthe oryzae 70-15]
gi|351646548|gb|EHA54408.1| nucleolar protein NOP2 [Magnaporthe oryzae 70-15]
gi|440471521|gb|ELQ40524.1| nucleolar protein NOP2 [Magnaporthe oryzae Y34]
gi|440481650|gb|ELQ62210.1| nucleolar protein NOP2 [Magnaporthe oryzae P131]
Length = 678
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 97/299 (32%), Positives = 135/299 (45%), Gaps = 60/299 (20%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V DS++ L P L GHY L Q +
Sbjct: 332 LVNRGVTLEPVGKWSKVGLQIFDSNV-PLGATPEYLGGHYILQAASSFLPVMALCPQENE 390
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM AAPG K TH A LM +TG +IA D +K R L I +L + + YD+
Sbjct: 391 RVLDMSAAPGGKTTHCAALMKNTGVIIANDPNKARSKGLIGNIHRLGVKNSIVCNYDARE 450
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY---ANIQ 204
I FDR+LLDAPCSG G + + + +K K + ++Q
Sbjct: 451 IPNLIG-----------GFDRVLLDAPCSGTG----VISKDPSVKTNKTEKDFMQLPHVQ 495
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL 264
K+LL A I K G +VY TCS++VEENE V+ + L R VEL++T
Sbjct: 496 KQLLLAA-----------IDATKVGGYIVYSTCSVTVEENEQVVNYALSRRSNVELLETG 544
Query: 265 PQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRKKYGEAP 317
G +G + ++F P + T R N D GF++ K KK G P
Sbjct: 545 LPFGKEGFT--------SFMGKKFHPSVKMTRRYYPHTYNVD--GFYVAKF-KKTGPTP 592
>gi|148240114|ref|YP_001225501.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
WH 7803]
gi|147848653|emb|CAK24204.1| Ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
WH 7803]
Length = 447
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/210 (33%), Positives = 99/210 (47%), Gaps = 32/210 (15%)
Query: 65 SMGILQNLPSILAGHY-------------LDVQPGQKVLDMCAAPGNKLTHIALLMNDTG 111
S G L+ P GH+ L V+PGQ+VLD CAAPG K TH+A LM D G
Sbjct: 231 SAGDLRQWPGYEEGHWCVQDRAAQWVAPLLAVEPGQRVLDACAAPGGKATHLAELMGDQG 290
Query: 112 TLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILL 171
+ A+D+S R+ ++ +L I + + +E + SFDRILL
Sbjct: 291 EVWAVDRSGGRLQRVAANAARLGCGCINA-------LAADAAQLLEERPQWRASFDRILL 343
Query: 172 DAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGI 231
DAPCSG G +A ++ + I +Q LL A+ +PLLK G
Sbjct: 344 DAPCSGLGTLARHPDARWRIS-EASIADLVKLQAGLLDAL-----------VPLLKPGGR 391
Query: 232 LVYCTCSLSVEENEAVIAWILHRHPEVELV 261
+VY TC++ EN I L RHP++ L
Sbjct: 392 IVYATCTVHPAENTEQIHGWLQRHPQLVLA 421
>gi|381209846|ref|ZP_09916917.1| hypothetical protein LGrbi_07971 [Lentibacillus sp. Grbi]
Length = 448
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/280 (29%), Positives = 133/280 (47%), Gaps = 49/280 (17%)
Query: 40 DILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNK 99
D +G+ V+ N+L + +Q+ S+L L+ +PG VLD C+APG K
Sbjct: 209 DFSGQGIIVDQGNILR---TRLFEEGYVTIQDQSSMLVTEMLNAEPGMSVLDACSAPGGK 265
Query: 100 LTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERM 159
+TH A M + G++ A D + ++ +L L+ I + D+ ++ +E
Sbjct: 266 VTHTAEKMQNKGSICAYDLHAKKAEQINHKAAELDLTIIDANAGDARKL-------LE-- 316
Query: 160 KLQKESFDRILLDAPCSGFG---QRP-MFYNANSFLNLDKKIKSYANIQKKLLQAVYRFV 215
K +K SFDRIL+DAPCSG G +P + YN + I A IQ +L+ V
Sbjct: 317 KHEKGSFDRILIDAPCSGLGVIRGKPDIKYNKT-----ENDIYRLAQIQTDILENV---- 367
Query: 216 SLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVEL----VQTLPQLGMKG 271
PLLK+ G+L+Y TC++ EN+ V A L ++PE L + LP +
Sbjct: 368 -------APLLKRGGLLIYSTCTVDKTENDEVAANFLTQNPEFMLDRAFFEQLPSMIQHS 420
Query: 272 LAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
H ++ G L P +TD GFF+ ++++
Sbjct: 421 PGHSEI-----------GLQLFPQTFSTD--GFFLTRIKR 447
>gi|50310429|ref|XP_455234.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644370|emb|CAG97942.1| KLLA0F03399p [Kluyveromyces lactis]
Length = 619
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 134/296 (45%), Gaps = 55/296 (18%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ ++V DS + I P LAGHY LD Q
Sbjct: 283 AQTLVNRGVNLQPIGSWTKVGLQIFDSQVPIGAT-PEYLAGHYILQAASSFLPVIALDPQ 341
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDM AAPG K T+I+ +M +TG + A D +K R L I +L ++ YD
Sbjct: 342 ENERILDMAAAPGGKTTYISAMMKNTGCVFANDANKARTKSLIANIHRLGCTNTIVCNYD 401
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANI- 203
+ FDRILLDAPCSG G + + + + K + I
Sbjct: 402 AREFPKVIG-----------GFDRILLDAPCSGTG----VIGKDQSVKVSRTEKDFMQIP 446
Query: 204 --QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
QK+LL + V G G++VY TCS++V+ENEAV+ + L + P V+LV
Sbjct: 447 HLQKQLLLSAIDSVDSNSKTG-------GVIVYSTCSVAVDENEAVVDYALRKRPNVKLV 499
Query: 262 QTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
+T +G +G + F P + T R N D GFF+ K +K
Sbjct: 500 ETKLAIGKEGFT--------SYRGKTFHPSVKMTRRYYPHTYNVD--GFFVAKFQK 545
>gi|332159134|ref|YP_004424413.1| sun protein (fmu protein) [Pyrococcus sp. NA2]
gi|331034597|gb|AEC52409.1| sun protein (fmu protein) [Pyrococcus sp. NA2]
Length = 450
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 116/245 (47%), Gaps = 40/245 (16%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
++Q+L S H L+ +PG++VLD+ AAPG+K H A LM + G ++A+D S R+ K++
Sbjct: 244 VIQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYDRLMKMK 303
Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNA 187
E +K L + +++ D L K+ FD+++LDAPCS G F
Sbjct: 304 ERMKILGVKNVKLVHADGQSF------------LDKDKFDKVILDAPCSSSGTYRQFPEV 351
Query: 188 NSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
+ ++KIK N+Q+ +L YR LK+ G + Y TCS+ ++ENE
Sbjct: 352 KWRFD-EEKIKRIINVQRNMLLNAYR-----------NLKEGGEMTYSTCSIRIDENEEN 399
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPT-DRNTDTIGFFI 306
+ + L + ELV G +G G + T D FFI
Sbjct: 400 VIFALEKG--FELVDYNFSWGDRGFLE-------------IGEKVFRTWTHKHDCNSFFI 444
Query: 307 CKLRK 311
KLRK
Sbjct: 445 AKLRK 449
>gi|313665137|ref|YP_004047008.1| ribosomal RNA small subunit methyltransferase B [Mycoplasma leachii
PG50]
gi|312949207|gb|ADR23803.1| ribosomal RNA small subunit methyltransferase B [Mycoplasma leachii
PG50]
Length = 423
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 125/247 (50%), Gaps = 60/247 (24%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ SIL L+ KVLD+C+APG KLTH+++++ +TG +IA + ++ ++ + E
Sbjct: 227 IQDKASILVSQILNPSLNAKVLDICSAPGGKLTHLSMILKNTGNIIANEINESKIKLIRE 286
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
I +L +I D+ +I QK+ FD ILLDAPCSGFG ++P
Sbjct: 287 NINRLNCLNISVINMDARKIK------------QKQEFDYILLDAPCSGFGVFKRKPEIK 334
Query: 186 NANSFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
L D+ ++ + N+Q++LL++ Y LK +G +VY TC+++ +EN
Sbjct: 335 -----LRFDQTQLNNIINLQEELLESAYYN-----------LKNNGEMVYSTCTINQDEN 378
Query: 245 EAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
+ I L+RH + M L K Q FG + NTD GF
Sbjct: 379 QNQITKFLNRHKD-----------MVKLYEK----------QIFG-----FEENTD--GF 410
Query: 305 FICKLRK 311
+ICKL+K
Sbjct: 411 YICKLKK 417
>gi|296211182|ref|XP_002752299.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 isoform 1
[Callithrix jacchus]
Length = 810
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 97/302 (32%), Positives = 140/302 (46%), Gaps = 52/302 (17%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+ V DSS+ I P LAGHY L Q
Sbjct: 323 AQTLINRGVNLDPLGKWSKTGLVVYDSSVPIGAT-PEYLAGHYMLQGASSMLPVMALAPQ 381
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDMC+APG K ++IA LM +TG ++A D + R+ + + +L +++ YD
Sbjct: 382 EHERILDMCSAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTVISHYD 441
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANI 203
+ FDR+LLDAPCSG G + + N D+K I A++
Sbjct: 442 GRQFPKVVG-----------GFDRVLLDAPCSGTGV--ISKDPAVKTNKDEKDILRCAHL 488
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
QK+LL + V+ G G LVYCTCS+ VEENE V+ + L + V LV T
Sbjct: 489 QKELLLSAIDSVNATSKTG-------GYLVYCTCSIMVEENEWVVDYALKKR-NVRLVPT 540
Query: 264 LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRKKYGEAP 317
G +G + +RF P L T R N D GFFI K +K P
Sbjct: 541 GLDFGQEGFT--------RFRERRFHPSLRSTRRFYPHTHNMD--GFFIAKFKKFSNSIP 590
Query: 318 EI 319
++
Sbjct: 591 QL 592
>gi|392388960|ref|YP_005907369.1| Sun family protein [Mycoplasma leachii 99/014/6]
gi|339276605|emb|CBV67184.1| Sun family protein [Mycoplasma leachii 99/014/6]
Length = 424
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 125/247 (50%), Gaps = 60/247 (24%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ SIL L+ KVLD+C+APG KLTH+++++ +TG +IA + ++ ++ + E
Sbjct: 228 IQDKASILVSQILNPSLNAKVLDICSAPGGKLTHLSMILKNTGNIIANEINESKIKLIRE 287
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
I +L +I D+ +I QK+ FD ILLDAPCSGFG ++P
Sbjct: 288 NINRLNCLNISVINMDARKIK------------QKQEFDYILLDAPCSGFGVFKRKPEIK 335
Query: 186 NANSFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
L D+ ++ + N+Q++LL++ Y LK +G +VY TC+++ +EN
Sbjct: 336 -----LRFDQTQLNNIINLQEELLESAYYN-----------LKNNGEMVYSTCTINQDEN 379
Query: 245 EAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
+ I L+RH + M L K Q FG + NTD GF
Sbjct: 380 QNQITKFLNRHKD-----------MVKLYEK----------QIFG-----FEENTD--GF 411
Query: 305 FICKLRK 311
+ICKL+K
Sbjct: 412 YICKLKK 418
>gi|189190438|ref|XP_001931558.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187973164|gb|EDU40663.1| tRNA (cytosine-5-)-methyltransferase NCL1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 739
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 137/294 (46%), Gaps = 51/294 (17%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV +E S+V D+ + L P LAGHY L Q
Sbjct: 315 AQTLINRGVQLEPVGKWSKVGLQIFDTQV-PLGATPEYLAGHYILQAASSFLPVMALAPQ 373
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
++VLDM AAPG K TH+A LM +TG + A D +K R L I +L ++ Y
Sbjct: 374 ENERVLDMAAAPGGKTTHLAALMKNTGCIFANDANKDRAKGLIGNIHRLGARNVIVSHY- 432
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLN-LDKKIKSYANI 203
S ++ R+ FDR+LLDAPCSG G + +A+ N + ++
Sbjct: 433 -------SALEFPRV---MGGFDRVLLDAPCSGTGV--IAKDASVKTNKTEADFMKLPHL 480
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
QK+LL A V+ G G +VY TCS+++EENE V+ + L++ P V+LV+T
Sbjct: 481 QKQLLLAAIDSVNHSSKTG-------GYIVYSTCSVTLEENEQVVQYALNKRPNVKLVET 533
Query: 264 LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
G +G + + F P + T R N D GFF+ K +K
Sbjct: 534 GLTFGKEGFT--------KIQGKIFHPSMKMTRRYYPHTYNVD--GFFVAKFKK 577
>gi|442805500|ref|YP_007373649.1| ribosomal RNA small subunit methyltransferase B [Clostridium
stercorarium subsp. stercorarium DSM 8532]
gi|442741350|gb|AGC69039.1| ribosomal RNA small subunit methyltransferase B [Clostridium
stercorarium subsp. stercorarium DSM 8532]
Length = 449
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/265 (31%), Positives = 128/265 (48%), Gaps = 45/265 (16%)
Query: 54 LSQVPNV-ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGT 112
+S + N+ A +Q+ S++ LD +PG+K+LD CAAPG K THI LM + G
Sbjct: 221 ISDISNLDAFQKGKITVQDESSMIVARILDPKPGEKILDTCAAPGGKTTHIGQLMQNRGH 280
Query: 113 LIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLD 172
+ A D + ++ + E K+L + IN S Q + + K +DR+L+D
Sbjct: 281 IDAWDVHEHKIALINENAKRLGVEI----------INASQQDALYLLNEAKGVYDRVLVD 330
Query: 173 APCSGFG---QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKD 229
APCSG G ++P + + + + IQKK+L R+V K
Sbjct: 331 APCSGTGIIRRKPDI----KWKRKKEDLSNLVEIQKKILYNAGRYV-----------KPG 375
Query: 230 GILVYCTCSLSVEENEAVIAWILHRHPEVE---LVQTLPQLGMKGLAHKDLEAEDQAVMQ 286
G+LVY TCS+ V ENE V+ + L + + + + + LPQ A K+ D+ M
Sbjct: 376 GVLVYSTCSVDVRENEEVVKFFLAENGDFKRESVKELLPQ------ALKEKAGVDEG-ML 428
Query: 287 RFGPPLIPTDRNTDTIGFFICKLRK 311
R P + TD GFFI ++RK
Sbjct: 429 RLYPHIDGTD------GFFIARMRK 447
>gi|242399529|ref|YP_002994954.1| nucleolar protein I [Thermococcus sibiricus MM 739]
gi|242265923|gb|ACS90605.1| Putative nucleolar protein I [Thermococcus sibiricus MM 739]
Length = 304
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 86/260 (33%), Positives = 128/260 (49%), Gaps = 45/260 (17%)
Query: 62 LDSSMGIL--QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKS 119
++ S+G++ Q S++ LD QPG+ VLDM AAPG K T IA M + G +IA D
Sbjct: 79 IEYSLGLVFPQEASSMIPPVVLDPQPGELVLDMAAAPGAKTTQIAQYMENKGCIIANDMK 138
Query: 120 KPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG 179
K RV L + + + + + V D T +FD+ILLDAPCS G
Sbjct: 139 KWRVNVLIANLNRFGVLNTRVTVKDGTYFGRFEN-----------TFDKILLDAPCSSVG 187
Query: 180 QRPMFYNANSFLN--LDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC 237
M + FL KK+ +Y+NIQKKL+ A Y+ LK G+LVY TC
Sbjct: 188 ---MVRKSFKFLFSWSMKKVITYSNIQKKLIMAAYK-----------ALKPRGVLVYSTC 233
Query: 238 SLSVEENEAVIAWILHRHP------EVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPP 291
++ ENE V+ ++L + ++ L T P L G+ + + E + ++
Sbjct: 234 TIDPLENEGVVDYLLLKTDAKIEKIDLPLHSTPPVLEFDGMKYSE---EVRKCLR----- 285
Query: 292 LIPTDRNTDTIGFFICKLRK 311
+ P D NT+ FF+ K+RK
Sbjct: 286 IHPQDNNTE--AFFVAKIRK 303
>gi|229140511|ref|ZP_04269066.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus
BDRD-ST26]
gi|228643072|gb|EEK99348.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus
BDRD-ST26]
Length = 360
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 119/245 (48%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G VLD CAAPG K THIA + TG +++LD +V +++
Sbjct: 148 IQDESSMLVARALEPDEGDVVLDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQ 207
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
++L L +++T D+ ++ E+FD+IL+DAPCSGFG + +
Sbjct: 208 QAERLGLGNVETKALDARKVQEH---------FANETFDKILVDAPCSGFG--VIRRKPD 256
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 257 IKLGKDKGDSERLSTIQLAILEKIA-----------PLLKQGGRLVYSTCTIEKIENEQV 305
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E T+ + + L+ E + Q + F T GF+I
Sbjct: 306 IERFLQEHPEFEWDTTIKERMPEKLSPYIDEGQVQILPHYFA-----------TDGFYIA 354
Query: 308 KLRKK 312
LRKK
Sbjct: 355 CLRKK 359
>gi|113474586|ref|YP_720647.1| sun protein [Trichodesmium erythraeum IMS101]
gi|110165634|gb|ABG50174.1| sun protein [Trichodesmium erythraeum IMS101]
Length = 443
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 127/270 (47%), Gaps = 44/270 (16%)
Query: 5 QSQCYCLWLDRAGFVSVLRLPARQRPSLSIYCYALDILFRGVAVEITNVLSQVPN-VALD 63
+++ C W + + + + P L ++I + + + ++ +L QVP + L+
Sbjct: 165 EAEKLCYWFNLSPSIDLRINP------LKTSVEEVEIAMKNIGISVSRIL-QVPQALRLN 217
Query: 64 SSMGILQNLPSILAGHY-------------LDVQPGQKVLDMCAAPGNKLTHIALLMNDT 110
++G +Q LP G + L+ QPG+ ++D CAAPG K THI LM D
Sbjct: 218 GAVGQIQKLPGYNEGWWSIQDSSAQLVCYLLNPQPGEIIIDACAAPGGKTTHIGELMGDN 277
Query: 111 GTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRIL 170
G + A+D + R+ KLE ++LQL SI DS N + I+ DR+L
Sbjct: 278 GKIFAIDMTASRLKKLESNTERLQLKSISISRGDSR--NLTEFIN---------QADRVL 326
Query: 171 LDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDG 230
LD PCSG G +A L+ I A +Q +LL+ ++V K G
Sbjct: 327 LDVPCSGLGTLHRRADARWRKTLE-NIGELAKLQGELLENAAKWV-----------KPGG 374
Query: 231 ILVYCTCSLSVEENEAVIAWILHRHPEVEL 260
+LVY TC++ ENE VI L + E E+
Sbjct: 375 VLVYATCTIYPLENEGVIEKFLTNNYEWEI 404
>gi|229197976|ref|ZP_04324690.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus m1293]
gi|228585455|gb|EEK43559.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus m1293]
Length = 360
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 119/245 (48%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G VLD CAAPG K THIA + TG +++LD +V +++
Sbjct: 148 IQDESSMLVARALEPDEGDVVLDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQ 207
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
++L L +++T D+ ++ E+FD+IL+DAPCSGFG + +
Sbjct: 208 QAERLGLGNVETKALDARKVQEH---------FANETFDKILVDAPCSGFG--VIRRKPD 256
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 257 IKLGKDKGDSERLSTIQLAILEKIA-----------PLLKQGGRLVYSTCTIEKIENEQV 305
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E T+ + + L+ E + Q + F T GF+I
Sbjct: 306 IERFLQEHPEFEWDTTIKERMPEKLSPYIDEGQVQILPHYFA-----------TDGFYIA 354
Query: 308 KLRKK 312
LRKK
Sbjct: 355 CLRKK 359
>gi|444510915|gb|ELV09762.1| Putative ribosomal RNA methyltransferase NOP2 [Tupaia chinensis]
Length = 803
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 99/304 (32%), Positives = 139/304 (45%), Gaps = 58/304 (19%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+ V DSS+ I P LAGHY L Q
Sbjct: 321 AQALINRGVNLDPLGKWSKTGLVVYDSSVPIGAT-PEYLAGHYMLQGASSMLPVMALAPQ 379
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDMC APG K ++IA LM +TG ++A D + R+ + + +L +++ YD
Sbjct: 380 EHERILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTILSHYD 439
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMF-YNANSFLNLDKKIKSY 200
R FDR+LLDAPCSG G + P N N +K I
Sbjct: 440 GRRFPKVVG-----------GFDRVLLDAPCSGTGVISKDPAVKTNKN-----EKDILRC 483
Query: 201 ANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVEL 260
A++QK+LL + V+ G G LVYCTCS++VEENE V+ + L + V L
Sbjct: 484 AHLQKELLLSAIDSVNANSKTG-------GYLVYCTCSVTVEENEWVVDYALKKR-NVRL 535
Query: 261 VQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRKKYG 314
V T G +G + +RF P L T R N D GFFI K +K
Sbjct: 536 VPTGLDFGQEGFT--------RFQERRFHPTLRSTRRFYPHTHNMD--GFFIAKFKKFSN 585
Query: 315 EAPE 318
P+
Sbjct: 586 SVPQ 589
>gi|301624894|ref|XP_002941729.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
[Xenopus (Silurana) tropicalis]
Length = 749
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 94/296 (31%), Positives = 139/296 (46%), Gaps = 56/296 (18%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ R V ++ S+ V DSS+ I P LAGHY L Q
Sbjct: 346 AQALINRSVNLDPLGKWSKTGLVIYDSSVPIGAT-PEYLAGHYMLQGASSLLPVIALAPQ 404
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
++VLDMC APG K +++A LM +TG ++A D + R+ + + +L +++ YD
Sbjct: 405 ENERVLDMCCAPGGKTSYMAQLMKNTGIVVANDMNADRLRSVVGNLHRLGVTNCIISNYD 464
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYA 201
+I+ FDR+LLDAPCSG G + P S + ++ A
Sbjct: 465 GRQISKVLG-----------GFDRVLLDAPCSGTGIISKDPAVKTNKSVQD----VQRCA 509
Query: 202 NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
+IQK+L+ + + D Q + G +VYCTCS++VEENE V+ + L + V+LV
Sbjct: 510 HIQKELILSA---IDALDAQS----QTGGFMVYCTCSITVEENECVVDYALKKR-NVKLV 561
Query: 262 QTLPQLGMKGLAHKDLEAEDQAVMQRFGPPL------IPTDRNTDTIGFFICKLRK 311
T G +G + +RF P L P N D GFFI KLRK
Sbjct: 562 PTGLDFGKEGFV--------RFKERRFHPSLRQARRFYPHTHNMD--GFFIAKLRK 607
>gi|296211184|ref|XP_002752300.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 isoform 2
[Callithrix jacchus]
Length = 843
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 97/302 (32%), Positives = 140/302 (46%), Gaps = 52/302 (17%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+ V DSS+ I P LAGHY L Q
Sbjct: 356 AQTLINRGVNLDPLGKWSKTGLVVYDSSVPIGAT-PEYLAGHYMLQGASSMLPVMALAPQ 414
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDMC+APG K ++IA LM +TG ++A D + R+ + + +L +++ YD
Sbjct: 415 EHERILDMCSAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTVISHYD 474
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANI 203
+ FDR+LLDAPCSG G + + N D+K I A++
Sbjct: 475 GRQFPKVVG-----------GFDRVLLDAPCSGTGV--ISKDPAVKTNKDEKDILRCAHL 521
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
QK+LL + V+ G G LVYCTCS+ VEENE V+ + L + V LV T
Sbjct: 522 QKELLLSAIDSVNATSKTG-------GYLVYCTCSIMVEENEWVVDYALKKR-NVRLVPT 573
Query: 264 LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRKKYGEAP 317
G +G + +RF P L T R N D GFFI K +K P
Sbjct: 574 GLDFGQEGFT--------RFRERRFHPSLRSTRRFYPHTHNMD--GFFIAKFKKFSNSIP 623
Query: 318 EI 319
++
Sbjct: 624 QL 625
>gi|254569392|ref|XP_002491806.1| Probable RNA m(5)C methyltransferase [Komagataella pastoris GS115]
gi|238031603|emb|CAY69526.1| Probable RNA m(5)C methyltransferase [Komagataella pastoris GS115]
gi|328351694|emb|CCA38093.1| Putative ribosomal RNA methyltransferase Nop2 [Komagataella
pastoris CBS 7435]
Length = 608
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 83/256 (32%), Positives = 117/256 (45%), Gaps = 44/256 (17%)
Query: 73 PSILAGHY-------------LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKS 119
P LAGHY LD Q +++LDM AAPG K T I+ +M +TG + A D +
Sbjct: 312 PEYLAGHYILQAASSFLPVMALDPQENERILDMAAAPGGKTTFISAMMKNTGCVFANDSN 371
Query: 120 KPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG 179
K R L I +L R S D FDR+LLDAPCSG G
Sbjct: 372 KARTKSLIANIHRL-----------GCRNTVVSNYDAREFPKVIGGFDRVLLDAPCSGTG 420
Query: 180 QRPMFYNANSFLNLDKKIKSYANI---QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT 236
+S + + + K + I Q++LL + V+ G GI+VY T
Sbjct: 421 ----VIAKDSNVKVARTEKDFIQIPYLQRQLLLSAIDSVNANSRSG-------GIIVYST 469
Query: 237 CSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGL-AHKDLEAEDQAVMQRFGPPLIPT 295
CS++VEENEAV+ + L + P V LV T +G G +++ ++ + R P
Sbjct: 470 CSVAVEENEAVVNYALKKRPNVRLVDTGLTIGKPGFTSYRGMKYHPSVNLTR---RYYPH 526
Query: 296 DRNTDTIGFFICKLRK 311
N D GFF+ K +K
Sbjct: 527 TYNVD--GFFVAKFKK 540
>gi|229013049|ref|ZP_04170214.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides
DSM 2048]
gi|228748303|gb|EEL98163.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides
DSM 2048]
Length = 415
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 116/245 (47%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G VLD CAAPG K THIA ++ TG +++LD +V +E+
Sbjct: 203 IQDESSMLVARALEPNKGDTVLDSCAAPGGKTTHIAERLDGTGKVMSLDLHAHKVRLIEQ 262
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
K+L L +++T D+ ++ ESFD+IL+DAPCSG G + +
Sbjct: 263 QAKRLGLENVETMALDARKVQEH---------FANESFDKILVDAPCSGSG--VIRRKPD 311
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 312 IKLGKDKGDSERLSTIQLAILEKI-----------APLLKQGGRLVYSTCTIEKIENEQV 360
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E T+ K + L R P TD GF+I
Sbjct: 361 IKQFLQEHPEFEWDTTI-----KDRMPEKLNPYIDEGQVRILPHYFATD------GFYIA 409
Query: 308 KLRKK 312
LRKK
Sbjct: 410 CLRKK 414
>gi|328850880|gb|EGG00040.1| hypothetical protein MELLADRAFT_45567 [Melampsora larici-populina
98AG31]
Length = 468
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 138/293 (47%), Gaps = 57/293 (19%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +SS+ I P LAG Y L QP +
Sbjct: 104 LINRGVNLEPIGKWSKVGLQVFESSVPIGAT-PEYLAGQYMLQAASSFLPVIALAPQPNE 162
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+ LDM AAPG K T ++ +M +TG L A D SK R L + +L ++ +D+
Sbjct: 163 RCLDMSAAPGGKTTFMSAMMQNTGVLFANDASKNRCKSLMANVTRLGCHNVVICNHDAR- 221
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKS---YANIQ 204
E K+ FDR+LLDAPCSG G + ++ + ++K K +++Q
Sbjct: 222 ---------EFPKVMG-GFDRVLLDAPCSGTG----VISKDASVKVNKSEKDLLLLSHLQ 267
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL 264
K+L+ VS P K G LVY TCS++ EENE+V+ + L + P V+LV++
Sbjct: 268 KQLILCAIDSVS-------PHSVKGGFLVYSTCSVTTEENESVVDYALRKRPNVKLVESG 320
Query: 265 PQLGMKGLA-------HKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLR 310
G +G H L+ + +RF P + D GFF+ KLR
Sbjct: 321 LTFGREGFTNFRGKTFHPSLK-----LTRRFYPHVHNVD------GFFVAKLR 362
>gi|384181679|ref|YP_005567441.1| 16S rRNA methyltransferase B [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|324327763|gb|ADY23023.1| 16S rRNA methyltransferase B [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 444
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 119/245 (48%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G VLD CAAPG K THIA + TG +++LD +V +++
Sbjct: 232 IQDESSMLVARALEPDEGDVVLDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQ 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
++L L +++T D+ ++ E+FD+IL+DAPCSGFG + +
Sbjct: 292 QAERLGLGNVETKALDARKVQEH---------FANETFDKILVDAPCSGFG--VIRRKPD 340
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 341 IKLGKDKGDSERLSTIQLAILEKI-----------APLLKQGGRLVYSTCTIEKIENEQV 389
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E T+ + + L+ E + Q + F T GF+I
Sbjct: 390 IERFLQEHPEFEWDTTIKERMPEKLSPYIDEGQVQILPHYFA-----------TDGFYIA 438
Query: 308 KLRKK 312
LRKK
Sbjct: 439 CLRKK 443
>gi|355707602|gb|AES03006.1| NOP2 nucleolar protein-like protein [Mustela putorius furo]
Length = 604
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 97/301 (32%), Positives = 139/301 (46%), Gaps = 52/301 (17%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+ V DSS+ I P LAGHY L Q
Sbjct: 332 AQALINRGVNLDPLGKWSKTGLVVYDSSVPIGAT-PEYLAGHYMLQGASSMLPVMALAPQ 390
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDMC APG K ++IA LM +TG ++A D + R+ + + +L +++ YD
Sbjct: 391 EHERILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYD 450
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANI 203
+ FDR+LLDAPCSG G + + N D+K I A++
Sbjct: 451 GRQFPKVVG-----------GFDRVLLDAPCSGTGV--ISKDPAVKTNKDEKDILRCAHL 497
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
QK+LL + V+ + K G LVYCTCS+ VEENE V+ + L + V LV T
Sbjct: 498 QKELLLSAIDSVNA-------MSKTGGYLVYCTCSIMVEENEWVVDYALKKR-NVRLVPT 549
Query: 264 LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRKKYGEAP 317
G +G + +RF P L T R N D GFFI K +K P
Sbjct: 550 GLDFGQEGFT--------RFRERRFHPTLRSTRRFYPHTHNMD--GFFIAKFKKFSNSVP 599
Query: 318 E 318
+
Sbjct: 600 Q 600
>gi|71030964|ref|XP_765124.1| nuclear protein [Theileria parva strain Muguga]
gi|68352080|gb|EAN32841.1| nuclear protein, putative [Theileria parva]
Length = 428
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 93/270 (34%), Positives = 123/270 (45%), Gaps = 58/270 (21%)
Query: 73 PSILAGHY-------------LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKS 119
P LAGHY L +P + VLDMCAAPG K THI LMN+TG L A D +
Sbjct: 188 PEYLAGHYILQSASSLIPVLSLAPRPNELVLDMCAAPGGKTTHIGQLMNNTGILFANDSN 247
Query: 120 KPRVTKLEETIKKLQ-LSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGF 178
K R L I +L L+SI + + ++ DRILLDAPCSG
Sbjct: 248 KSRCKSLVSNIHRLGILNSIVCNYKGDELVRVLPKM------------DRILLDAPCSGL 295
Query: 179 G---QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC 235
G + P +L + +N+QK+LL A I L+K +GI+VY
Sbjct: 296 GVISRDPSIKVKRGLKDLQRN----SNLQKQLLTA-----------SINLVKPNGIIVYS 340
Query: 236 TCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAH---KDLEAEDQAVMQRFGPPL 292
TCSLS+EENE VI + + R V+LV ++G + + +RF P
Sbjct: 341 TCSLSIEENEQVIHYAI-RKFNVKLVPLGLEIGTPAFSSFRGRKFHPSIAKFARRFYPHK 399
Query: 293 IPTDRNTDTIGFFICKLRKKYGEAPEIYIH 322
D GFF+ KL K P +IH
Sbjct: 400 HSLD------GFFVAKLIK----LPNSHIH 419
>gi|428181325|gb|EKX50189.1| hypothetical protein GUITHDRAFT_104001 [Guillardia theta CCMP2712]
Length = 536
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 104/203 (51%), Gaps = 36/203 (17%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+QN PSI+ GH LD QPG+++LDMCA+PG K TH A +M G++ A+D+++ + + E
Sbjct: 273 VQNFPSIVVGHVLDPQPGERILDMCASPGGKTTHAAAIMQGEGSVTAIDRTQAKAAVIRE 332
Query: 129 TIKKLQLSSIQTHVYDSTRINT-------SSQIDIERMKLQ--------------KESFD 167
+ L L ++ DS+ I +++++ ++ E FD
Sbjct: 333 NAQHLGLKNVWVLKGDSSSIPPVGGNVPLPEELEVDAVEPSGGGVGGEVKKKIQFDELFD 392
Query: 168 RILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLK 227
RI+LD PC+ G RP + ++ + +Y Q++++ + LLK
Sbjct: 393 RIILDPPCTALGLRPRLAVDIPPIEME-RTPAY---QRRMMHVA-----------VGLLK 437
Query: 228 KDGILVYCTCSLSVEENEAVIAW 250
G LVY TC+++ EENE +AW
Sbjct: 438 TGGRLVYSTCTINPEENECNVAW 460
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 312 KYGEAPEIYIHPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFAPGVLA 371
+YGE + +H + D +VI P ++ ++ +++V + CA AVLRG+ +F PG++
Sbjct: 83 RYGE---VRVHEVIGDAVVIRPDEHDAREILPEGRELVVSRRCAEAVLRGSHIFIPGMMG 139
>gi|402556013|ref|YP_006597284.1| 16S rRNA methyltransferase B [Bacillus cereus FRI-35]
gi|401797223|gb|AFQ11082.1| 16S rRNA methyltransferase B [Bacillus cereus FRI-35]
Length = 444
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 119/245 (48%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G VLD CAAPG K THIA + TG +++LD +V +++
Sbjct: 232 IQDESSMLVARALEPDEGDVVLDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQ 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
++L L +++T D+ ++ E+FD+IL+DAPCSGFG + +
Sbjct: 292 QAERLGLGNVETKALDARKVQEH---------FANETFDKILVDAPCSGFG--VIRRKPD 340
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 341 IKLGKDKGDSERLSTIQLAILEKI-----------APLLKQGGRLVYSTCTIEKIENEQV 389
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E T+ + + L+ E + Q + F T GF+I
Sbjct: 390 IERFLQEHPEFEWDTTIKERMPEKLSPYIDEGQVQILPHYFA-----------TDGFYIA 438
Query: 308 KLRKK 312
LRKK
Sbjct: 439 CLRKK 443
>gi|423574529|ref|ZP_17550648.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
MSX-D12]
gi|423604508|ref|ZP_17580401.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD102]
gi|401212054|gb|EJR18800.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
MSX-D12]
gi|401245128|gb|EJR51486.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD102]
Length = 444
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 119/245 (48%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G VLD CAAPG K THIA + TG +++LD +V +++
Sbjct: 232 IQDESSMLVARALEPDEGDVVLDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQ 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
++L L +++T D+ ++ E+FD+IL+DAPCSGFG + +
Sbjct: 292 QAERLGLGNVETKALDARKVQEH---------FANETFDKILVDAPCSGFG--VIRRKPD 340
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 341 IKLGKDKGDSERLSTIQLAILEKI-----------APLLKQGGRLVYSTCTIEKIENEQV 389
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E T+ + + L+ E + Q + F T GF+I
Sbjct: 390 IERFLQEHPEFEWDTTIKERMPEKLSPYIDEGQVQILPHYFA-----------TDGFYIA 438
Query: 308 KLRKK 312
LRKK
Sbjct: 439 CLRKK 443
>gi|217961285|ref|YP_002339853.1| sun protein [Bacillus cereus AH187]
gi|222097310|ref|YP_002531367.1| sun protein [Bacillus cereus Q1]
gi|375285788|ref|YP_005106227.1| sun protein [Bacillus cereus NC7401]
gi|423353567|ref|ZP_17331194.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
IS075]
gi|423374338|ref|ZP_17351676.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AND1407]
gi|423567240|ref|ZP_17543487.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
MSX-A12]
gi|217064955|gb|ACJ79205.1| sun protein [Bacillus cereus AH187]
gi|221241368|gb|ACM14078.1| sun protein [Bacillus cereus Q1]
gi|358354315|dbj|BAL19487.1| sun protein [Bacillus cereus NC7401]
gi|401089380|gb|EJP97551.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
IS075]
gi|401094250|gb|EJQ02332.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AND1407]
gi|401214328|gb|EJR21058.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
MSX-A12]
Length = 444
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 119/245 (48%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G VLD CAAPG K THIA + TG +++LD +V +++
Sbjct: 232 IQDESSMLVARALEPDEGDVVLDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQ 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
++L L +++T D+ ++ E+FD+IL+DAPCSGFG + +
Sbjct: 292 QAERLGLGNVETKALDARKVQEH---------FANETFDKILVDAPCSGFG--VIRRKPD 340
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 341 IKLGKDKGDSERLSTIQLAILEKI-----------APLLKQGGRLVYSTCTIEKIENEQV 389
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E T+ + + L+ E + Q + F T GF+I
Sbjct: 390 IERFLQEHPEFEWDTTIKERMPEKLSPYIDEGQVQILPHYFA-----------TDGFYIA 438
Query: 308 KLRKK 312
LRKK
Sbjct: 439 CLRKK 443
>gi|293374996|ref|ZP_06621291.1| ribosomal RNA small subunit methyltransferase B [Turicibacter
sanguinis PC909]
gi|325843368|ref|ZP_08167951.1| ribosomal RNA small subunit methyltransferase B [Turicibacter sp.
HGF1]
gi|292646406|gb|EFF64421.1| ribosomal RNA small subunit methyltransferase B [Turicibacter
sanguinis PC909]
gi|325489397|gb|EGC91770.1| ribosomal RNA small subunit methyltransferase B [Turicibacter sp.
HGF1]
Length = 444
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 79/255 (30%), Positives = 125/255 (49%), Gaps = 38/255 (14%)
Query: 61 ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSK 120
A + +Q+ S+L L + KVLD C+APG K TH+A +M TG + A D
Sbjct: 223 AFEQGWFYVQDESSMLVARALKPKHHTKVLDTCSAPGGKTTHVAEMMRQTGMVYAHDIYP 282
Query: 121 PRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG- 179
++ +E+ +K+L L ++ ++ D+T++ ESFD +L+DAPCSG G
Sbjct: 283 HKIKLIEDNVKRLGLKNVVVNLQDATKLTEC---------YPSESFDSVLVDAPCSGLGI 333
Query: 180 --QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC 237
+ P +LD IQK++L+ V L+K G L+Y TC
Sbjct: 334 LRRHPEVKITKKPEDLD----GVMAIQKEILKTV-----------ASLVKYGGTLLYSTC 378
Query: 238 SLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR 297
+++ +EN+ ++ W L HPE +L QTL ++ L E ++Q F P D
Sbjct: 379 TVNRKENDKMVEWFLREHPEFKLDQTL----VERLPEVLNEQASTGMVQLF-----PGDY 429
Query: 298 NTDTIGFFICKLRKK 312
TD GFFI L+++
Sbjct: 430 QTD--GFFIACLKRE 442
>gi|292670256|ref|ZP_06603682.1| RNA methyltransferase Sun [Selenomonas noxia ATCC 43541]
gi|292648208|gb|EFF66180.1| RNA methyltransferase Sun [Selenomonas noxia ATCC 43541]
Length = 448
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 120/250 (48%), Gaps = 37/250 (14%)
Query: 62 LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKP 121
L + +Q+ S+L H L +PG V+D CAAPG K THIA M + G ++A D +
Sbjct: 235 LHEGLAQVQDESSMLVTHVLAPEPGMTVIDACAAPGGKTTHIAQRMENCGRILAFDIYEE 294
Query: 122 RVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQR 181
++ ++E K+L +S I+ V D+ I KE DR+L+DAPCSG G
Sbjct: 295 KIRRIERNAKRLGISIIEAAVLDAREIGAH----------YKEQADRVLVDAPCSGLGVL 344
Query: 182 PMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSV 241
+A + + K+ +Q+++L + + V +K G+LVY TC++
Sbjct: 345 RRKPDARWRKSASDR-KTLPPLQREILASAAQTV-----------RKGGVLVYSTCTMED 392
Query: 242 EENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDT 301
EN AV+ L HP+ L +T L K + + ++ ++P D
Sbjct: 393 CENTAVVEHFLKTHPDFSLEETGAFLPGKKRSEQMVQ-------------IMPETDGPD- 438
Query: 302 IGFFICKLRK 311
GFFI ++R+
Sbjct: 439 -GFFIARMRR 447
>gi|228940953|ref|ZP_04103512.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar berliner ATCC 10792]
gi|228973882|ref|ZP_04134458.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar thuringiensis str. T01001]
gi|228980472|ref|ZP_04140782.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis Bt407]
gi|228779292|gb|EEM27549.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis Bt407]
gi|228785907|gb|EEM33910.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar thuringiensis str. T01001]
gi|228818789|gb|EEM64855.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar berliner ATCC 10792]
Length = 429
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 119/245 (48%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G VLD CAAPG K THIA + TG +++LD +V +++
Sbjct: 217 IQDESSMLVARALEPNTGDAVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQ 276
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
++L L +++T D+ ++ E+FD+IL+DAPCSGFG + +
Sbjct: 277 QAERLGLENVETKALDARKVQEH---------FANETFDKILVDAPCSGFG--VIRRKPD 325
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 326 IKLGKDKGDSERLSTIQLAILEKI-----------APLLKQGGRLVYSTCTIEKIENEQV 374
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E T+ + + L+ E + Q + F T GF+I
Sbjct: 375 IDKFLKEHPEFEWDTTIKERMPEKLSPYINEGQVQILPHYFA-----------TDGFYIA 423
Query: 308 KLRKK 312
LRKK
Sbjct: 424 CLRKK 428
>gi|206976730|ref|ZP_03237634.1| sun protein [Bacillus cereus H3081.97]
gi|206745040|gb|EDZ56443.1| sun protein [Bacillus cereus H3081.97]
Length = 444
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 119/245 (48%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G VLD CAAPG K THIA + TG +++LD +V +++
Sbjct: 232 IQDESSMLVARALEPDEGDVVLDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQ 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
++L L +++T D+ ++ E+FD+IL+DAPCSGFG + +
Sbjct: 292 QAERLGLGNVETKALDARKVQEH---------FANETFDKILVDAPCSGFG--VIRRKPD 340
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 341 IKLGKDKGDSERLSTIQLAILEKI-----------APLLKQGGRLVYSTCTIEKIENEQV 389
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E T+ + + L+ E + Q + F T GF+I
Sbjct: 390 IERFLQEHPEFEWDTTIKERMPEKLSPYIDEGQVQILPHYFA-----------TDGFYIA 438
Query: 308 KLRKK 312
LRKK
Sbjct: 439 CLRKK 443
>gi|14521455|ref|NP_126931.1| proliferating-cell nucleolar antigen P120, [Pyrococcus abyssi GE5]
gi|5458674|emb|CAB50161.1| Sun/NOL1/NOP2 nucleolar protein [Pyrococcus abyssi GE5]
gi|380742059|tpe|CCE70693.1| TPA: proliferating-cell nucleolar antigen P120, putative
[Pyrococcus abyssi GE5]
Length = 449
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 109/205 (53%), Gaps = 27/205 (13%)
Query: 61 ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSK 120
A + I+Q S +A L+ QPG+ ++D+ AAPG K TH+A LM + G + A D K
Sbjct: 235 AFNKGKIIVQEEASAVASLILNPQPGEVIVDLAAAPGGKTTHLAELMKNKGKIYAFDIDK 294
Query: 121 PRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSG--- 177
R+ +L+E + ++ + ++ + D + + +I L +E DR+LLDAPC+
Sbjct: 295 TRMKRLKEFVNRMGIKIVKPIIKDGRK---APEI------LGEEIADRVLLDAPCTSSGT 345
Query: 178 FGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC 237
G+ P + + KIK A +Q++LL++ + L+K G+L+Y TC
Sbjct: 346 IGKNPEL----RWRLRESKIKEMAQLQRELLESAAK-----------LVKPGGLLLYTTC 390
Query: 238 SLSVEENEAVIAWILHRHPEVELVQ 262
SL EENE + W L+ H E +LV
Sbjct: 391 SLFTEENEENVKWFLNNHQEFKLVH 415
>gi|344204967|ref|YP_004790109.1| putative rRNA small subunit methyltransferase B [Mycoplasma
putrefaciens KS1]
gi|343956890|gb|AEM68605.1| putative rRNA small subunit methyltransferase B [Mycoplasma
putrefaciens KS1]
Length = 419
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 122/247 (49%), Gaps = 60/247 (24%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ SIL L+ VLDMCAAPG+K TH++ +MN+TG ++A + SK ++ + E
Sbjct: 228 IQDKASILVSQVLNPSLNANVLDMCAAPGSKTTHLSAIMNNTGMILANEISKNKLGLIAE 287
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
I +L +I+ D+ +I+ ++ FD ILLDAPCSGFG ++P
Sbjct: 288 NISRLGCQNIKLANLDARQIDRTN------------YFDFILLDAPCSGFGVLKRKPEIK 335
Query: 186 NANSFLNLD-KKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
LN D K+IK +Q +LL++ Y LK +G LVY TC+++ EN
Sbjct: 336 -----LNFDFKQIKQTVKLQAELLESAYHN-----------LKSNGELVYSTCTINKNEN 379
Query: 245 EAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
+ I L++H Q +++ + + + NTD GF
Sbjct: 380 QNQIIRFLNKH--------------------------QDMVKIYEKQIFGFEENTD--GF 411
Query: 305 FICKLRK 311
+ICKL+K
Sbjct: 412 YICKLKK 418
>gi|294623688|ref|ZP_06702521.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium U0317]
gi|291596903|gb|EFF28121.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium U0317]
Length = 445
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 119/249 (47%), Gaps = 42/249 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDT--GTLIALDKSKPRVTKL 126
+Q+ S+L + ++P VLD CAAPG K THIA ++ + G ++ALD + +V +
Sbjct: 234 IQDESSMLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDPSCGGEVVALDVHEHKVKLI 293
Query: 127 EETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFY 185
E+ +L +SS + D+ ++ + + E FDRIL+DAPCSG G
Sbjct: 294 EDNAARLGVSSAVYAQKMDAREVSK---------QFEAEQFDRILVDAPCSGLG----LL 340
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ K+ AN+ K L+ + P LK GIL Y TC++ EEN+
Sbjct: 341 RRKPDIRYKKQPDELANLPKIQLEILESCA--------PTLKSSGILTYSTCTILKEENQ 392
Query: 246 AVIAWILHRHPEVELVQTL--PQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIG 303
V++ L RHP+ E + L P L Q+ ++ L P TD G
Sbjct: 393 DVVSAFLERHPDFERIDVLTNPML--------------QSSIEEKMLTLYPHQFYTD--G 436
Query: 304 FFICKLRKK 312
FFIC LRKK
Sbjct: 437 FFICCLRKK 445
>gi|429965868|gb|ELA47865.1| hypothetical protein VCUG_00585 [Vavraia culicis 'floridensis']
Length = 305
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 122/244 (50%), Gaps = 32/244 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q SIL+ LDV+ VLDMCA+PG K T IA +M +TG L ++ + R++ L
Sbjct: 92 IQGASSILSVINLDVKEHMSVLDMCASPGGKSTFIAEMMKNTGMLYLVENNPDRISSLAG 151
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
+ ++ + S I++ ++L+ E DR+LLDAPCSG G A
Sbjct: 152 NLLRMG-------------VQNSVVINMNVLELEIEKVDRVLLDAPCSGTGTISKDGKAK 198
Query: 189 SFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVI 248
+ D ++ YA QKKL+ +G LK +GI++Y TCS+ +ENE V+
Sbjct: 199 TLAEDD--LRRYAETQKKLI-----------LKGFDSLKGNGIMIYSTCSVLADENECVV 245
Query: 249 AWILHRHPEVELVQTLPQLGMKGL-AHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
++L + ++++ +G +G A + + + + ++ + P N D GFF
Sbjct: 246 EYLLRKRKNAKILECEGNVGKRGFTAFRGMFFDAK---MKYARRIFPHIHNMD--GFFFV 300
Query: 308 KLRK 311
K+ K
Sbjct: 301 KILK 304
>gi|423385368|ref|ZP_17362624.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG1X1-2]
gi|401635424|gb|EJS53179.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG1X1-2]
Length = 444
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 119/245 (48%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G VLD CAAPG K THIA + TG +++LD +V +++
Sbjct: 232 IQDESSMLVARALEPNTGDAVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQ 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
++L L +++T D+ ++ E+FD+IL+DAPCSGFG + +
Sbjct: 292 QAERLGLENVETKALDARKVQEH---------FANETFDKILVDAPCSGFG--VIRRKPD 340
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 341 IKLGKDKGDSERLSTIQLAILEKI-----------APLLKQGGRLVYSTCTIEKIENEQV 389
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E T+ + + L+ E + Q + F T GF+I
Sbjct: 390 IDKFLKEHPEFEWDTTIKERMPEKLSPYINEGQVQILPHYFA-----------TDGFYIA 438
Query: 308 KLRKK 312
LRKK
Sbjct: 439 CLRKK 443
>gi|384187925|ref|YP_005573821.1| sun protein [Bacillus thuringiensis serovar chinensis CT-43]
gi|410676239|ref|YP_006928610.1| ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis Bt407]
gi|423528274|ref|ZP_17504719.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuB1-1]
gi|452200304|ref|YP_007480385.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
gi|326941634|gb|AEA17530.1| sun protein [Bacillus thuringiensis serovar chinensis CT-43]
gi|402451937|gb|EJV83756.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuB1-1]
gi|409175368|gb|AFV19673.1| ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis Bt407]
gi|452105697|gb|AGG02637.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
Length = 444
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 119/245 (48%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G VLD CAAPG K THIA + TG +++LD +V +++
Sbjct: 232 IQDESSMLVARALEPNTGDAVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQ 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
++L L +++T D+ ++ E+FD+IL+DAPCSGFG + +
Sbjct: 292 QAERLGLENVETKALDARKVQEH---------FANETFDKILVDAPCSGFG--VIRRKPD 340
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 341 IKLGKDKGDSERLSTIQLAILEKI-----------APLLKQGGRLVYSTCTIEKIENEQV 389
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E T+ + + L+ E + Q + F T GF+I
Sbjct: 390 IDKFLKEHPEFEWDTTIKERMPEKLSPYINEGQVQILPHYFA-----------TDGFYIA 438
Query: 308 KLRKK 312
LRKK
Sbjct: 439 CLRKK 443
>gi|389583837|dbj|GAB66571.1| proliferating-cell nucleolar antigen p120, partial [Plasmodium
cynomolgi strain B]
Length = 329
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 111/207 (53%), Gaps = 24/207 (11%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
++Q+ S++ L+VQP + +LDMCAAPG K T I L + G + A D +K R +E
Sbjct: 111 MIQSASSLIPVLELNVQPNEIILDMCAAPGGKCTFICALQKNKGFVYANDVNKMRCKAIE 170
Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNA 187
++ + ++ +D+ +I E+ Q FD+I+LDAPCSG G + N
Sbjct: 171 ANASRMGIHNLIVTSFDALKIG-------EKWNFQ---FDKIILDAPCSGTG--VVNKNK 218
Query: 188 NSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
+ K+I+ A Q+KLL I L+K GI+VY TCS++VEENE V
Sbjct: 219 GARRKTIKEIRDLAQKQRKLLN-----------NAISLVKNGGIVVYSTCSITVEENEQV 267
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAH 274
I +IL + +V ++ T Q+G G+ H
Sbjct: 268 INYILKKR-DVNVLPTNIQIGDPGITH 293
>gi|318040449|ref|ZP_07972405.1| sun protein [Synechococcus sp. CB0101]
Length = 454
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 111/219 (50%), Gaps = 34/219 (15%)
Query: 59 NVALDSSMGILQNLPSILAGHY-------------LDVQPGQKVLDMCAAPGNKLTHIAL 105
+ L G L LP GH+ LD QPG+++LD CAAPG K TH+A
Sbjct: 232 GITLQGRSGDLSRLPGFGEGHWCVQDRAAQRIAPLLDPQPGERILDACAAPGGKSTHLAE 291
Query: 106 LMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKES 165
M D G ++ALD+ + R+ ++ ++L L SI D+T + E+ +LQ S
Sbjct: 292 WMGDQGMVLALDRGEARLRRVSRNAERLGLRSIAVQHGDATALAQ------EQPELQG-S 344
Query: 166 FDRILLDAPCSGFGQRPMFYNANSFLNLD-KKIKSYANIQKKLLQAVYRFVSLFDWQGIP 224
FDRIL+DAPCSG G + +A++ +D I +Q++LL+ + +
Sbjct: 345 FDRILVDAPCSGLGT--LARHADARWRIDPAAIGELVVLQRQLLEGLLPLL--------- 393
Query: 225 LLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
K G +VY TC++ EN A+I + HP +++ Q+
Sbjct: 394 --KPKGRMVYATCTVHPSENSALIDAFVADHPALQVQQS 430
>gi|293402263|ref|ZP_06646401.1| ribosomal RNA small subunit methyltransferase B
[Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291304370|gb|EFE45621.1| ribosomal RNA small subunit methyltransferase B
[Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 415
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 103/193 (53%), Gaps = 22/193 (11%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S L + +D QP +++LD+CAAPG K TH+A LM D G +I D + RV +++
Sbjct: 221 IQDEASQLVAYCVDPQPKERILDVCAAPGTKSTHMAELMQDEGEIICGDIHEHRVELIQQ 280
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
+LQL SI V D+T ++ LQ+ SFDR+L D PCSG+G
Sbjct: 281 GADRLQLHSIHPIVMDATELHG----------LQEASFDRVLCDVPCSGYG--------- 321
Query: 189 SFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVI 248
L +K ++Q + + + + + ++K+ GILVY TC+L+ +ENE +
Sbjct: 322 ---VLARKSDIKYHMQSEDMDTLIPLQAAILEKASTMVKQGGILVYSTCTLNKKENEKQV 378
Query: 249 AWILHRHPEVELV 261
L +H E LV
Sbjct: 379 EKFLKKHEEFTLV 391
>gi|418002299|ref|ZP_12642420.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
casei UCD174]
gi|410544461|gb|EKQ18787.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
casei UCD174]
Length = 446
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 89/247 (36%), Positives = 124/247 (50%), Gaps = 38/247 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMN--DTGTLIALDKSKPRVTKL 126
+Q+ S+L LD+QPG VLD CAAPG K THIA ++ G + ALD +V +
Sbjct: 234 MQDESSMLVAPSLDIQPGDVVLDACAAPGGKTTHIAQYLDPKQGGQVTALDLHANKVRLI 293
Query: 127 EETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFY 185
+ K+L L+ I V D+ R+ T+ SFD+IL+DAPCSG G
Sbjct: 294 NKNAKRLGLTDRIHAQVLDARRVATT---------FPANSFDKILVDAPCSGLG----LI 340
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ K + A++Q+ L A+ V+ P LK G L Y TC++ EEN+
Sbjct: 341 RRKPEIKYTKTPEDPAHLQQIQL-AILNSVA-------PTLKIGGRLTYSTCTMVKEENQ 392
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
V+A L HPE E V ++P L K L HK A + +Q F P D +TD GFF
Sbjct: 393 DVVAQFLAAHPEFEQV-SVPTL--KPL-HK---AHNAPALQLF-----PDDYDTD--GFF 438
Query: 306 ICKLRKK 312
I L ++
Sbjct: 439 IASLIRR 445
>gi|404370888|ref|ZP_10976204.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp.
7_2_43FAA]
gi|226912989|gb|EEH98190.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp.
7_2_43FAA]
Length = 439
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 110/196 (56%), Gaps = 30/196 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ ++L LD++ G KVLD+CAAPG K THIA L+ ++G ++A D + +++ +EE
Sbjct: 231 VQDESAMLVAPLLDLKEGDKVLDLCAAPGGKTTHIAELLANSGEVLAFDLHENKLSLIEE 290
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESF-DRILLDAPCSGFG---QRPMF 184
K+L L++I D+T++N+ S+ D++L+D PCSG G ++P
Sbjct: 291 NAKRLGLNNIVCKAMDATKLNSDYI-----------SYGDKVLIDVPCSGLGIIRKKPEI 339
Query: 185 YNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
+ +++K IQ+++++ +++ LK G LVY TC+L+ EEN
Sbjct: 340 ----KWNKTRQQLKDLVPIQREIMENAWQY-----------LKPGGTLVYSTCTLNKEEN 384
Query: 245 EAVIAWILHRHPEVEL 260
E + W L +H + E+
Sbjct: 385 EENLKWFLSKHNDAEI 400
>gi|313891936|ref|ZP_07825537.1| ribosomal RNA small subunit methyltransferase B [Dialister
microaerophilus UPII 345-E]
gi|313119579|gb|EFR42770.1| ribosomal RNA small subunit methyltransferase B [Dialister
microaerophilus UPII 345-E]
Length = 448
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 120/238 (50%), Gaps = 44/238 (18%)
Query: 78 GHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS 137
+ LD +P +KVLDMCAAPG+K T IA LM++ G++ A D ++ +EE I +L +
Sbjct: 252 AYALDPKPYEKVLDMCAAPGSKTTQIAQLMDNKGSIDAWDLYPHKIKLIEENINRLGVKI 311
Query: 138 IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSG---FGQRPMFYNANSFLNLD 194
+ + D+T++ + E +D++LLDAPCSG G +P + +
Sbjct: 312 VTPKLQDATKL----------LPTLNEQYDKVLLDAPCSGLGVLGHKPEL----RWRRTE 357
Query: 195 KKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHR 254
+ I+S + QK LL+ +V KK G LVY TC+L++ ENE V+ W L++
Sbjct: 358 ETIESLISTQKDLLKCASIYV-----------KKGGTLVYSTCTLNINENEKVVDWFLNQ 406
Query: 255 HPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKK 312
E L +A D+ + ++ + P + +D GFFI K +++
Sbjct: 407 KKEFYL---------DSIAVNDIINSENGMLTLW-PDTLKSD------GFFIAKFKRR 448
>gi|449485255|ref|XP_002193312.2| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
[Taeniopygia guttata]
Length = 695
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 96/295 (32%), Positives = 138/295 (46%), Gaps = 54/295 (18%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+ V DS++ I P LAGHY L Q
Sbjct: 338 AQALINRGVNLDPLGKWSKTGLVIYDSTVPIGAT-PEYLAGHYMLQGASSLLPVMALAPQ 396
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDMC APG K ++IA LM +TG ++A D S R+ + + +L +++
Sbjct: 397 ENERILDMCCAPGGKTSYIAQLMKNTGMILANDSSAERLRSVVGNLHRLGVTNA------ 450
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANI 203
S D + FDR+LLDAPCSG G + + N D+K I+ A++
Sbjct: 451 -----VVSNCDGRQFPKVIGGFDRVLLDAPCSGTGV--ISKDPAVKTNKDEKDIQRCAHL 503
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
QK+L+ + V+ G G +VYCTCS+ VEENE V+ + L + V LV T
Sbjct: 504 QKELILSAIDSVNAASETG-------GYIVYCTCSIMVEENECVVDYALKKR-NVRLVAT 555
Query: 264 LPQLGMKGLAH-KDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
G +G KD +RF P L T R N D GFFI K +K
Sbjct: 556 GLDFGKEGFTRFKD---------RRFHPSLKSTRRFYPHTHNMD--GFFIAKFKK 599
>gi|304404144|ref|ZP_07385806.1| sun protein [Paenibacillus curdlanolyticus YK9]
gi|304347122|gb|EFM12954.1| sun protein [Paenibacillus curdlanolyticus YK9]
Length = 521
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 118/248 (47%), Gaps = 35/248 (14%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L G VLD CAAPG K TH+A LM + G +IA D + +E+
Sbjct: 303 IQDESSMLVAQAARPAAGMTVLDCCAAPGGKTTHLAELMGNEGRVIANDVHPHKQALIEQ 362
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
++L L+ ++ D+ + + ESFD +LLDAPCSG G ++P
Sbjct: 363 QAERLGLTCVEAVTGDAAELGE---------RYSSESFDLVLLDAPCSGLGVIARKPEI- 412
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ + I+ A IQKKL+ V L+K DG LVY TC++ +EN+
Sbjct: 413 ---KWTKSEGDIREIAAIQKKLINGV-----------AGLVKPDGRLVYSTCTIDRDEND 458
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGL-AHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
I+ L HPE L P ++ L + ++ E +Q L+P +D GF
Sbjct: 459 RQISQFLKDHPEYTLDAEWPAELLESLRSAGAVQGEFTGALQ-----LLPNHFGSD--GF 511
Query: 305 FICKLRKK 312
+I LRK+
Sbjct: 512 YIATLRKR 519
>gi|326436780|gb|EGD82350.1| hypothetical protein PTSG_03014 [Salpingoeca sp. ATCC 50818]
Length = 880
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 93/283 (32%), Positives = 133/283 (46%), Gaps = 42/283 (14%)
Query: 44 RGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQKVL 90
RGV+++ S+V V +S++ I P L GHY L QP ++VL
Sbjct: 355 RGVSLDSVGNWSKVGLVVFESNVPIGA-TPEYLCGHYIIQSASSFLPVMALAPQPNERVL 413
Query: 91 DMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINT 150
DM AAPG K T+IA LM +TG L A D +K R+ L I +L +++ YD T
Sbjct: 414 DMAAAPGGKTTYIAALMKNTGVLFANDANKARIKSLAANISRLGVTNTVVCNYDGRSFPT 473
Query: 151 SSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQA 210
FDRILLDAPCSG G +A + + + + + +QK+L+ A
Sbjct: 474 VIG-----------GFDRILLDAPCSGSGVISKDASAKNTKD-ETDFRRCSTLQKELILA 521
Query: 211 VYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMK 270
V G G +VY TCS+ V+ENE V+ + L R V+LV T G
Sbjct: 522 AIDSVDANSKTG-------GYIVYSTCSIMVDENEEVVNYAL-RKRNVKLVDTGLTFGRP 573
Query: 271 GL-AHKDLEAEDQ-AVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
G +++ D + +RF P + D GFF+ KL+K
Sbjct: 574 GFKSYRGKHFPDTMQLTRRFYPHVHNMD------GFFVAKLKK 610
>gi|242770399|ref|XP_002341972.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Talaromyces stipitatus ATCC
10500]
gi|218725168|gb|EED24585.1| nucleolar RNA methyltransferase (Nop2), putative [Talaromyces
stipitatus ATCC 10500]
Length = 770
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 92/297 (30%), Positives = 140/297 (47%), Gaps = 50/297 (16%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV ++ S+V +S++ L P LAGHY L Q +
Sbjct: 342 LINRGVVLQPVGKWSKVGLQVFESAV-PLGATPEYLAGHYILQAASSFLPVMALAPQENE 400
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM +APG K T+I+ LM +TG ++A D SK R L I +L + Y++
Sbjct: 401 RVLDMASAPGGKTTYISALMRNTGIVVANDASKARTKGLIGNIHRLGCKNTIVCNYNAQ- 459
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY---ANIQ 204
E FDR+LLDAPC+G G + + + +K + + ++Q
Sbjct: 460 ---------EAFPKILGGFDRVLLDAPCTGTG----VISKDPSVKTNKTERDFLAIPHLQ 506
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT- 263
++LL A G G +VY TCS++VEENE V+ ++L + P V++V T
Sbjct: 507 RQLLLAAIDSTDHHSKTG-------GYIVYSTCSVTVEENEQVVQYVLRKRPNVKIVDTG 559
Query: 264 LPQLGMKGLAH---KDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKKYGEAP 317
L G +G K + E + +R+ P N D GFF+CKL KK G +P
Sbjct: 560 LGSFGSEGFTSYMGKKFD-EKMTLTRRY----FPHRENVD--GFFVCKL-KKTGPSP 608
>gi|45187619|ref|NP_983842.1| ADL254Wp [Ashbya gossypii ATCC 10895]
gi|44982357|gb|AAS51666.1| ADL254Wp [Ashbya gossypii ATCC 10895]
Length = 603
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 86/292 (29%), Positives = 134/292 (45%), Gaps = 47/292 (16%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A +++ RGV ++ ++V DS + + P LAGHY LD
Sbjct: 273 AQNLVNRGVNLQPIGSWTKVGLQIFDSQVPVGAT-PEYLAGHYILQAASSFLPVIALDPH 331
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDM AAPG K T+I+ +M +TG + A D +K R L I +L ++ YD
Sbjct: 332 ENERILDMAAAPGGKTTYISAMMKNTGCVFANDANKARTKSLIANIHRLGCTNTIVCNYD 391
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANI- 203
+ FDRILLDAPCSG G + + +++ K + I
Sbjct: 392 AREFPKVIG-----------GFDRILLDAPCSGTG----VIGKDQSVKVNRTEKDFMQIP 436
Query: 204 --QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
QK+L+ + V G G++VY TCS++VEENEAV+ + L + P V+LV
Sbjct: 437 HLQKQLILSAIDSVDSNSKHG-------GVIVYSTCSVAVEENEAVVDYALRKRPNVKLV 489
Query: 262 QTLPQLGMKGLAHKDLEAEDQAV--MQRFGPPLIPTDRNTDTIGFFICKLRK 311
+T +G +G + + +R+ P D GFF+ K +K
Sbjct: 490 ETGLAIGKEGFTSYRGKKFHHTINLTRRYYPHTYNVD------GFFVAKFQK 535
>gi|381183025|ref|ZP_09891794.1| 16S rRNA methyltransferase B [Listeriaceae bacterium TTU M1-001]
gi|380317083|gb|EIA20433.1| 16S rRNA methyltransferase B [Listeriaceae bacterium TTU M1-001]
Length = 441
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 130/255 (50%), Gaps = 43/255 (16%)
Query: 61 ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSK 120
A + +Q+ S++ + L+++ VLD CAAPG K T IA MN TG+++ALD
Sbjct: 224 AFKTGKCTIQDESSMVVAYALELKDDLDVLDACAAPGGKTTLIAEKMNGTGSVMALDIHA 283
Query: 121 PRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG- 179
+ +E+ ++L L +I+T D+ + T + +++SFDR+L+DAPCSGFG
Sbjct: 284 HKTKLVEQAARRLNLLNIRTLALDARKATT---------EFEEKSFDRVLVDAPCSGFGV 334
Query: 180 --QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC 237
++P + + I + IQ +L V + L+K++GILVY TC
Sbjct: 335 LKRKPDI----KYSKKPEDITRLSEIQLAILDEVSQ-----------LVKENGILVYSTC 379
Query: 238 SLSVEENEAVIAWILHRHPEVELVQ-TLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTD 296
++ EN V+ L+ HPE E++ ++P K L H + Q ++PTD
Sbjct: 380 TIDEMENAEVVQKFLNSHPEFEMLSVSVP----KTLEHLKTGNDLQ---------ILPTD 426
Query: 297 RNTDTIGFFICKLRK 311
+D GF++ ++
Sbjct: 427 FGSD--GFYVASFKR 439
>gi|257882565|ref|ZP_05662218.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
1,231,502]
gi|424797357|ref|ZP_18222955.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium S447]
gi|424952100|ref|ZP_18367138.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium R496]
gi|424957014|ref|ZP_18371766.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium R446]
gi|424967575|ref|ZP_18381268.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium P1140]
gi|424995169|ref|ZP_18407066.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium ERV168]
gi|424999160|ref|ZP_18410800.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium ERV165]
gi|425001027|ref|ZP_18412563.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium ERV161]
gi|425004970|ref|ZP_18416253.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium ERV102]
gi|425011289|ref|ZP_18422198.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E422]
gi|425017691|ref|ZP_18428187.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium C621]
gi|425033033|ref|ZP_18438036.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 515]
gi|431777739|ref|ZP_19565990.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E2560]
gi|431783163|ref|ZP_19571285.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E6012]
gi|431784119|ref|ZP_19572164.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E6045]
gi|257818223|gb|EEV45551.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
1,231,502]
gi|402921204|gb|EJX41663.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium S447]
gi|402927707|gb|EJX47642.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium R496]
gi|402944646|gb|EJX63044.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium R446]
gi|402954065|gb|EJX71720.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium P1140]
gi|402978068|gb|EJX93833.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium ERV168]
gi|402980118|gb|EJX95747.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium ERV165]
gi|402987639|gb|EJY02686.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium ERV161]
gi|402988011|gb|EJY03040.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium ERV102]
gi|402997454|gb|EJY11775.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E422]
gi|403003899|gb|EJY17748.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium C621]
gi|403011440|gb|EJY24750.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 515]
gi|430639032|gb|ELB74923.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E2560]
gi|430645836|gb|ELB81338.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E6012]
gi|430650160|gb|ELB85514.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E6045]
Length = 452
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 119/249 (47%), Gaps = 42/249 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDT--GTLIALDKSKPRVTKL 126
+Q+ S+L + ++P VLD CAAPG K THIA ++ + G ++ALD + +V +
Sbjct: 241 IQDESSMLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDPSCGGEVVALDVHEHKVKLI 300
Query: 127 EETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFY 185
E+ +L +SS + D+ ++ + + E FDRIL+DAPCSG G
Sbjct: 301 EDNAARLGVSSAVYAQKMDAREVSK---------QFEAEQFDRILVDAPCSGLG----LL 347
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ K+ AN+ K L+ + P LK GIL Y TC++ EEN+
Sbjct: 348 RRKPDIRYKKQPDELANLPKIQLEILESCA--------PTLKSSGILTYSTCTILKEENQ 399
Query: 246 AVIAWILHRHPEVELVQTL--PQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIG 303
V++ L RHP+ E + L P L Q+ ++ L P TD G
Sbjct: 400 DVVSAFLERHPDFERIDVLTNPML--------------QSSIEEKMLTLYPHQFYTD--G 443
Query: 304 FFICKLRKK 312
FFIC LRKK
Sbjct: 444 FFICCLRKK 452
>gi|222479906|ref|YP_002566143.1| RNA methylase, NOL1/NOP2/sun family [Halorubrum lacusprofundi ATCC
49239]
gi|222452808|gb|ACM57073.1| RNA methylase, NOL1/NOP2/sun family [Halorubrum lacusprofundi ATCC
49239]
Length = 314
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 117/240 (48%), Gaps = 30/240 (12%)
Query: 74 SILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKL 133
S+L G LD QPG+ V D CAAPG+K T IA MND GT++A D + R++ L ++L
Sbjct: 87 SVLPGLALDPQPGEHVWDACAAPGSKTTQIADAMNDEGTVVANDNNLGRLSALRHNAERL 146
Query: 134 QLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNL 193
+++ D+ +T L + FDR L+DAPCS G + L
Sbjct: 147 GITNAIVTNQDARNFSTK--------PLAFDEFDRALVDAPCSCEGTCRKNLDVVDQWTL 198
Query: 194 DKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILH 253
D + + A IQK +L + + + G +VY TC+ + EENEAV+ +L
Sbjct: 199 D-HVHAVAGIQKGILA-----------RAVQATRSGGTVVYSTCTFAPEENEAVLDHVLG 246
Query: 254 RHPEVELVQ-TLPQLGMKGLAHKDLEAEDQAVMQ--RFGPPLIPTDRNTDTIGFFICKLR 310
+ E+V LP + G+ D E D++V + R P + DT GFF KLR
Sbjct: 247 EE-DCEIVAFDLPLDTVPGVTEWDGETYDESVTRAHRVYP------HHNDTGGFFCAKLR 299
>gi|430821474|ref|ZP_19440082.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E0045]
gi|430827179|ref|ZP_19445343.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E0164]
gi|430906578|ref|ZP_19485013.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1575]
gi|431766092|ref|ZP_19554588.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E4215]
gi|430438427|gb|ELA48858.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E0045]
gi|430444359|gb|ELA54214.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E0164]
gi|430554536|gb|ELA94138.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1575]
gi|430627162|gb|ELB63679.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E4215]
Length = 452
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 119/249 (47%), Gaps = 42/249 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDT--GTLIALDKSKPRVTKL 126
+Q+ S+L + ++P VLD CAAPG K THIA ++ + G ++ALD + +V +
Sbjct: 241 IQDESSMLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDPSRGGEVVALDVHEHKVKLI 300
Query: 127 EETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFY 185
E+ +L +SS + D+ ++ + + E FDRIL+DAPCSG G
Sbjct: 301 EDNAARLGVSSAVYAQKMDAREVSK---------QFEAEQFDRILVDAPCSGLG----LL 347
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ K+ AN+ K L+ + P LK GIL Y TC++ EEN+
Sbjct: 348 RRKPDIRYKKQPDELANLPKIQLEILESCA--------PALKSSGILTYSTCTILKEENQ 399
Query: 246 AVIAWILHRHPEVELVQTL--PQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIG 303
V++ L RHP+ E + L P L Q+ ++ L P TD G
Sbjct: 400 DVVSAFLERHPDFERIDVLTNPML--------------QSSIEEKMLTLYPHQFYTD--G 443
Query: 304 FFICKLRKK 312
FFIC LRKK
Sbjct: 444 FFICCLRKK 452
>gi|374107055|gb|AEY95963.1| FADL254Wp [Ashbya gossypii FDAG1]
Length = 603
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 86/292 (29%), Positives = 134/292 (45%), Gaps = 47/292 (16%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A +++ RGV ++ ++V DS + + P LAGHY LD
Sbjct: 273 AQNLVNRGVNLQPIGSWTKVGLQIFDSQVPVGAT-PEYLAGHYILQAASSFLPVIALDPH 331
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDM AAPG K T+I+ +M +TG + A D +K R L I +L ++ YD
Sbjct: 332 ENERILDMAAAPGGKTTYISAMMKNTGCVFANDANKARTKSLIANIHRLGCTNTIVCNYD 391
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANI- 203
+ FDRILLDAPCSG G + + +++ K + I
Sbjct: 392 AREFPKVIG-----------GFDRILLDAPCSGTG----VIGKDQSVKVNRTEKDFMQIP 436
Query: 204 --QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
QK+L+ + V G G++VY TCS++VEENEAV+ + L + P V+LV
Sbjct: 437 HLQKQLILSAIDSVDSNSKHG-------GVIVYSTCSVAVEENEAVVDYALRKRPNVKLV 489
Query: 262 QTLPQLGMKGLAHKDLEAEDQAV--MQRFGPPLIPTDRNTDTIGFFICKLRK 311
+T +G +G + + +R+ P D GFF+ K +K
Sbjct: 490 ETGLAIGKEGFTSYRGKKFHHTINLTRRYYPHTYNVD------GFFVAKFQK 535
>gi|294618612|ref|ZP_06698151.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1679]
gi|291595131|gb|EFF26469.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1679]
Length = 445
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 119/249 (47%), Gaps = 42/249 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDT--GTLIALDKSKPRVTKL 126
+Q+ S+L + ++P VLD CAAPG K THIA ++ + G ++ALD + +V +
Sbjct: 234 IQDESSMLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDPSCGGEVVALDVHEHKVKLI 293
Query: 127 EETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFY 185
E+ +L +SS + D+ ++ + + E FDRIL+DAPCSG G
Sbjct: 294 EDNAARLGVSSAVYAQKMDAREVSK---------QFEAEQFDRILVDAPCSGLG----LL 340
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ K+ AN+ K L+ + P LK GIL Y TC++ EEN+
Sbjct: 341 RRKPDIRYKKQPDELANLPKIQLEILESCA--------PALKSSGILTYSTCTILKEENQ 392
Query: 246 AVIAWILHRHPEVELVQTL--PQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIG 303
V++ L RHP+ E + L P L Q+ ++ L P TD G
Sbjct: 393 DVVSAFLERHPDFERIDVLTNPML--------------QSSIEEKMLTLYPHQFYTD--G 436
Query: 304 FFICKLRKK 312
FFIC LRKK
Sbjct: 437 FFICCLRKK 445
>gi|348526221|ref|XP_003450619.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
[Oreochromis niloticus]
Length = 740
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 93/293 (31%), Positives = 137/293 (46%), Gaps = 56/293 (19%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV ++ S+V V DSS+ + P LAGHY L Q G+
Sbjct: 329 LINRGVNLDPLGKWSKVGLVIYDSSVPVGAT-PEYLAGHYMLQGASSFLPVMALSPQEGE 387
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
VLDM +APG K T+IA LM +TG ++A D + R+ + I +L +++ YD
Sbjct: 388 LVLDMSSAPGGKTTYIAQLMRNTGVIVANDANAERLKSVVGNIHRLGVTNTVVCNYDGRE 447
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYANIQ 204
FDR+LLDAPCSG G + P + +++++ A++Q
Sbjct: 448 FPKVMG-----------GFDRVLLDAPCSGTGVIAKDPAVKTSKDEVDINR----CAHLQ 492
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL 264
K+L+ + V+ G G LVYCTCS++VEENE V+ + L + V+LV T
Sbjct: 493 KELILSAIDSVNADSPSG-------GYLVYCTCSITVEENEWVVDYALKKR-NVKLVPTG 544
Query: 265 PQLGMKGLAHKDLEAEDQAVMQRFGPPL------IPTDRNTDTIGFFICKLRK 311
G +G + RF P L P N D GFF+ KL+K
Sbjct: 545 LDFGKEGFTN--------FKKFRFHPTLRLTRRFYPHSHNMD--GFFVAKLKK 587
>gi|431758710|ref|ZP_19547335.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E3083]
gi|430617078|gb|ELB53964.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E3083]
Length = 452
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 120/247 (48%), Gaps = 38/247 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDT--GTLIALDKSKPRVTKL 126
+Q+ S+L + ++P VLD CAAPG K THIA ++ + G +IALD + +V +
Sbjct: 241 IQDESSMLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDPSCGGEVIALDVHEHKVKLI 300
Query: 127 EETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFY 185
EE +L +SS + D+ ++ + + E FDRIL+DAPCSG G
Sbjct: 301 EENATRLGVSSAVYAQKMDAREVSK---------QFEPEQFDRILVDAPCSGLG----LL 347
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ K+ AN+ K L+ + P LK GIL Y TC++ EEN+
Sbjct: 348 RRKPDIRYKKQPDELANLPKIQLEILESCA--------PALKSSGILTYSTCTILKEENQ 399
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
V++ L RHP+ E + L ++ +++++ L P TD GFF
Sbjct: 400 DVVSAFLERHPDFERIDVLTNPMLQS-----------SIVEKM-LTLYPHQFYTD--GFF 445
Query: 306 ICKLRKK 312
IC LRKK
Sbjct: 446 ICCLRKK 452
>gi|431761102|ref|ZP_19549689.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E3346]
gi|430622476|gb|ELB59197.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E3346]
Length = 452
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 119/249 (47%), Gaps = 42/249 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDT--GTLIALDKSKPRVTKL 126
+Q+ S+L + ++P VLD CAAPG K THIA ++ + G ++ALD + +V +
Sbjct: 241 IQDESSMLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDPSCGGEVVALDVHEHKVKLI 300
Query: 127 EETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFY 185
E+ +L +SS + D+ ++ + + E FDRIL+DAPCSG G
Sbjct: 301 EDNAARLGVSSAVYAQKMDAREVSK---------QFEAEQFDRILVDAPCSGLG----LL 347
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ K+ AN+ K L+ + P LK GIL Y TC++ EEN+
Sbjct: 348 RRKPDIRYKKQPDELANLPKIQLEILESCA--------PALKSSGILTYSTCTILKEENQ 399
Query: 246 AVIAWILHRHPEVELVQTL--PQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIG 303
V++ L RHP+ E + L P L Q+ ++ L P TD G
Sbjct: 400 DVVSAFLERHPDFERIDVLTNPML--------------QSSIEEKMLTLYPHQFYTD--G 443
Query: 304 FFICKLRKK 312
FFIC LRKK
Sbjct: 444 FFICCLRKK 452
>gi|257888654|ref|ZP_05668307.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
1,141,733]
gi|257824708|gb|EEV51640.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
1,141,733]
Length = 452
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 120/247 (48%), Gaps = 38/247 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDT--GTLIALDKSKPRVTKL 126
+Q+ S+L + ++P VLD CAAPG K THIA ++ + G +IALD + +V +
Sbjct: 241 IQDESSMLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDPSCGGEVIALDVHEHKVKLI 300
Query: 127 EETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFY 185
EE +L +SS + D+ ++ + + E FDRIL+DAPCSG G
Sbjct: 301 EENATRLGVSSAVYAQKMDAREVSK---------QFEPEQFDRILVDAPCSGLG----LL 347
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ K+ AN+ K L+ + P LK GIL Y TC++ EEN+
Sbjct: 348 RRKPDIRYKKQPDELANLPKIQLEILESCA--------PALKSSGILTYSTCTILKEENQ 399
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
V++ L RHP+ E + L ++ +++++ L P TD GFF
Sbjct: 400 DVVSAFLERHPDFERIDVLTNPMLQS-----------SIVEKM-LTLYPHQFYTD--GFF 445
Query: 306 ICKLRKK 312
IC LRKK
Sbjct: 446 ICCLRKK 452
>gi|257886037|ref|ZP_05665690.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
1,231,501]
gi|430854012|ref|ZP_19471734.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1258]
gi|257821893|gb|EEV49023.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
1,231,501]
gi|430539689|gb|ELA79929.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1258]
Length = 452
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 119/249 (47%), Gaps = 42/249 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDT--GTLIALDKSKPRVTKL 126
+Q+ S+L + ++P VLD CAAPG K THIA ++ + G ++ALD + +V +
Sbjct: 241 IQDESSMLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDPSCGGEVVALDVHEHKVKLI 300
Query: 127 EETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFY 185
E+ +L +SS + D+ ++ + + E FDRIL+DAPCSG G
Sbjct: 301 EDNAARLGVSSTVYAQKMDAREVSK---------QFEAEQFDRILVDAPCSGLG----LL 347
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ K+ AN+ K L+ + P LK GIL Y TC++ EEN+
Sbjct: 348 RRKPDIRYKKQPDELANLPKIQLEILESCA--------PALKSSGILTYSTCTILKEENQ 399
Query: 246 AVIAWILHRHPEVELVQTL--PQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIG 303
V++ L RHP+ E + L P L Q+ ++ L P TD G
Sbjct: 400 DVVSAFLERHPDFERIDVLTNPML--------------QSSIEEKMLTLYPHQFYTD--G 443
Query: 304 FFICKLRKK 312
FFIC LRKK
Sbjct: 444 FFICCLRKK 452
>gi|227552686|ref|ZP_03982735.1| RNA methyltransferase [Enterococcus faecium TX1330]
gi|257897390|ref|ZP_05677043.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium Com12]
gi|293378850|ref|ZP_06625005.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium PC4.1]
gi|424762075|ref|ZP_18189601.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium TX1337RF]
gi|431043192|ref|ZP_19492991.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1590]
gi|431753358|ref|ZP_19542032.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E2620]
gi|431763474|ref|ZP_19552024.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E3548]
gi|227178181|gb|EEI59153.1| RNA methyltransferase [Enterococcus faecium TX1330]
gi|257833955|gb|EEV60376.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium Com12]
gi|292642391|gb|EFF60546.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium PC4.1]
gi|402425837|gb|EJV57981.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium TX1337RF]
gi|430561636|gb|ELB00899.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1590]
gi|430612265|gb|ELB49316.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E2620]
gi|430622247|gb|ELB58984.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E3548]
Length = 452
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 120/247 (48%), Gaps = 38/247 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDT--GTLIALDKSKPRVTKL 126
+Q+ S+L + ++P VLD CAAPG K THIA ++ + G +IALD + +V +
Sbjct: 241 IQDESSMLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDPSCGGEVIALDVHEHKVKLI 300
Query: 127 EETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFY 185
EE +L +SS + D+ ++ + + E FDRIL+DAPCSG G
Sbjct: 301 EENATRLGVSSAVYAQKMDAREVSK---------QFEPEQFDRILVDAPCSGLG----LL 347
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ K+ AN+ K L+ + P LK GIL Y TC++ EEN+
Sbjct: 348 RRKPDIRYKKQPDELANLPKIQLEILESCA--------PALKSSGILTYSTCTILKEENQ 399
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
V++ L RHP+ E + L ++ +++++ L P TD GFF
Sbjct: 400 DVVSAFLERHPDFERIDVLTNPMLQS-----------SIVEKM-LTLYPHQFYTD--GFF 445
Query: 306 ICKLRKK 312
IC LRKK
Sbjct: 446 ICCLRKK 452
>gi|431449111|ref|ZP_19513952.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1630]
gi|430585503|gb|ELB23788.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1630]
Length = 452
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 119/249 (47%), Gaps = 42/249 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDT--GTLIALDKSKPRVTKL 126
+Q+ S+L + ++P VLD CAAPG K THIA ++ + G ++ALD + +V +
Sbjct: 241 IQDESSMLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDPSCGGEVVALDVHEHKVKLI 300
Query: 127 EETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFY 185
E+ +L +SS + D+ ++ + + E FDRIL+DAPCSG G
Sbjct: 301 EDNAARLGVSSAVYAQKMDAREVSK---------QFEAEQFDRILVDAPCSGLG----LL 347
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ K+ AN+ K L+ + P LK GIL Y TC++ EEN+
Sbjct: 348 RRKPDIRYKKQPDELANLPKIQLEILESCA--------PALKSSGILTYSTCTILKEENQ 399
Query: 246 AVIAWILHRHPEVELVQTL--PQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIG 303
V++ L RHP+ E + L P L Q+ ++ L P TD G
Sbjct: 400 DVVSAFLERHPDFERIDVLTNPML--------------QSSIEEKMLTLYPHQFYTD--G 443
Query: 304 FFICKLRKK 312
FFIC LRKK
Sbjct: 444 FFICCLRKK 452
>gi|119609186|gb|EAW88780.1| nucleolar protein 1, 120kDa [Homo sapiens]
Length = 606
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 96/301 (31%), Positives = 139/301 (46%), Gaps = 52/301 (17%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+ V DSS+ I P LAGHY L Q
Sbjct: 119 AQALINRGVNLDPLGKWSKTGLVVYDSSVPIGAT-PEYLAGHYMLQGASSMLPVMALAPQ 177
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDMC APG K +++A LM +TG ++A D + R+ + + +L +++ YD
Sbjct: 178 EHERILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYD 237
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANI 203
+ FDR+LLDAPCSG G + + N D+K I A++
Sbjct: 238 GRQFPKVVG-----------GFDRVLLDAPCSGTGV--ISKDPAVKTNKDEKDILRCAHL 284
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
QK+LL + V+ G G LVYCTCS++VEENE V+ + L + V LV T
Sbjct: 285 QKELLLSAIDSVNATSKTG-------GYLVYCTCSITVEENEWVVDYALKKR-NVRLVPT 336
Query: 264 LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRKKYGEAP 317
G +G + +RF P L T R N D GFFI K +K P
Sbjct: 337 GLDFGQEGFT--------RFRERRFHPSLRSTRRFYPHTHNMD--GFFIAKFKKFSNSIP 386
Query: 318 E 318
+
Sbjct: 387 Q 387
>gi|69245428|ref|ZP_00603423.1| Fmu, rRNA SAM-dependent methyltransferase [Enterococcus faecium DO]
gi|257879839|ref|ZP_05659492.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
1,230,933]
gi|257891680|ref|ZP_05671333.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
1,231,410]
gi|257894155|ref|ZP_05673808.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
1,231,408]
gi|260559512|ref|ZP_05831693.1| fmu [Enterococcus faecium C68]
gi|293563686|ref|ZP_06678127.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1162]
gi|293570098|ref|ZP_06681178.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1071]
gi|314938230|ref|ZP_07845530.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium TX0133a04]
gi|314943127|ref|ZP_07849925.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium TX0133C]
gi|314949324|ref|ZP_07852666.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium TX0082]
gi|314952258|ref|ZP_07855272.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium TX0133A]
gi|314992114|ref|ZP_07857564.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium TX0133B]
gi|314996296|ref|ZP_07861352.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium TX0133a01]
gi|383329934|ref|YP_005355818.1| Ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium Aus0004]
gi|389869750|ref|YP_006377173.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium DO]
gi|406579473|ref|ZP_11054704.1| Ribosomal RNA small subunit methyltransferase B [Enterococcus sp.
GMD4E]
gi|406581818|ref|ZP_11056953.1| Ribosomal RNA small subunit methyltransferase B [Enterococcus sp.
GMD3E]
gi|406584220|ref|ZP_11059255.1| Ribosomal RNA small subunit methyltransferase B [Enterococcus sp.
GMD2E]
gi|406589674|ref|ZP_11064102.1| Ribosomal RNA small subunit methyltransferase B [Enterococcus sp.
GMD1E]
gi|410937646|ref|ZP_11369505.1| ribosomal RNA small subunit methyltransferase B [Enterococcus sp.
GMD5E]
gi|415892937|ref|ZP_11550036.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E4453]
gi|416138831|ref|ZP_11599108.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E4452]
gi|424790097|ref|ZP_18216690.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium V689]
gi|424849933|ref|ZP_18274360.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium R501]
gi|424859988|ref|ZP_18283963.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium R499]
gi|424898958|ref|ZP_18322505.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium R497]
gi|424953483|ref|ZP_18368441.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium R494]
gi|424960830|ref|ZP_18375311.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium P1986]
gi|424965095|ref|ZP_18379122.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium P1190]
gi|424970946|ref|ZP_18384420.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium P1139]
gi|424974729|ref|ZP_18387946.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium P1137]
gi|424977459|ref|ZP_18390470.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium P1123]
gi|424979758|ref|ZP_18392592.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium ERV99]
gi|424985891|ref|ZP_18398348.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium ERV69]
gi|424986853|ref|ZP_18399255.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium ERV38]
gi|424992530|ref|ZP_18404587.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium ERV26]
gi|425008269|ref|ZP_18419362.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium ERV1]
gi|425013389|ref|ZP_18424121.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E417]
gi|425020447|ref|ZP_18430752.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium C497]
gi|425030251|ref|ZP_18435445.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium C1904]
gi|425036355|ref|ZP_18441118.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 514]
gi|425039086|ref|ZP_18443651.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 513]
gi|425041968|ref|ZP_18446340.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 511]
gi|425046818|ref|ZP_18450806.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 510]
gi|425048047|ref|ZP_18451972.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 509]
gi|425053657|ref|ZP_18457187.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 506]
gi|425061726|ref|ZP_18464934.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 503]
gi|427397665|ref|ZP_18890147.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
durans FB129-CNAB-4]
gi|430832554|ref|ZP_19450597.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E0333]
gi|430845349|ref|ZP_19463243.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1050]
gi|430847142|ref|ZP_19464989.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1133]
gi|430856282|ref|ZP_19473980.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1392]
gi|430861041|ref|ZP_19478633.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1573]
gi|430964174|ref|ZP_19487622.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1576]
gi|431014797|ref|ZP_19490339.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1578]
gi|431239339|ref|ZP_19503642.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1622]
gi|431265361|ref|ZP_19506063.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1623]
gi|431312202|ref|ZP_19508852.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1626]
gi|431560990|ref|ZP_19519622.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1731]
gi|431747439|ref|ZP_19536233.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E2134]
gi|431749938|ref|ZP_19538668.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E2297]
gi|431756190|ref|ZP_19544828.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E2883]
gi|431768618|ref|ZP_19557053.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1321]
gi|431771744|ref|ZP_19560121.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1644]
gi|431774675|ref|ZP_19562980.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E2369]
gi|431780435|ref|ZP_19568614.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E4389]
gi|447913820|ref|YP_007395232.1| Ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium NRRL B-2354]
gi|68195810|gb|EAN10246.1| Fmu, rRNA SAM-dependent methyltransferase [Enterococcus faecium DO]
gi|257814067|gb|EEV42825.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
1,230,933]
gi|257828040|gb|EEV54666.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
1,231,410]
gi|257830534|gb|EEV57141.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
1,231,408]
gi|260074611|gb|EEW62932.1| fmu [Enterococcus faecium C68]
gi|291587470|gb|EFF19354.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1071]
gi|291604370|gb|EFF33863.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1162]
gi|313589540|gb|EFR68385.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium TX0133a01]
gi|313593328|gb|EFR72173.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium TX0133B]
gi|313595600|gb|EFR74445.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium TX0133A]
gi|313598135|gb|EFR76980.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium TX0133C]
gi|313642426|gb|EFS07006.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium TX0133a04]
gi|313644273|gb|EFS08853.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium TX0082]
gi|364090928|gb|EHM33455.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E4452]
gi|364092975|gb|EHM35290.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E4453]
gi|378939628|gb|AFC64700.1| Ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium Aus0004]
gi|388534999|gb|AFK60191.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium DO]
gi|402916518|gb|EJX37384.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium R501]
gi|402921241|gb|EJX41699.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium V689]
gi|402926066|gb|EJX46134.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium R499]
gi|402931982|gb|EJX51528.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium R497]
gi|402938875|gb|EJX57841.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium R494]
gi|402944975|gb|EJX63354.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium P1190]
gi|402945767|gb|EJX64098.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium P1986]
gi|402955686|gb|EJX73197.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium P1137]
gi|402960439|gb|EJX77583.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium P1139]
gi|402964974|gb|EJX81722.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium ERV69]
gi|402965790|gb|EJX82478.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium P1123]
gi|402968200|gb|EJX84694.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium ERV99]
gi|402973075|gb|EJX89224.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium ERV26]
gi|402975682|gb|EJX91622.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium ERV38]
gi|402993008|gb|EJY07659.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium ERV1]
gi|403001090|gb|EJY15165.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E417]
gi|403003830|gb|EJY17685.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium C1904]
gi|403009253|gb|EJY22712.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium C497]
gi|403014990|gb|EJY27938.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 514]
gi|403017443|gb|EJY30190.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 513]
gi|403023155|gb|EJY35441.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 510]
gi|403024990|gb|EJY37102.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 511]
gi|403029317|gb|EJY41078.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 506]
gi|403031773|gb|EJY43363.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 509]
gi|403040652|gb|EJY51714.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 503]
gi|404455509|gb|EKA02356.1| Ribosomal RNA small subunit methyltransferase B [Enterococcus sp.
GMD4E]
gi|404459006|gb|EKA05379.1| Ribosomal RNA small subunit methyltransferase B [Enterococcus sp.
GMD3E]
gi|404464410|gb|EKA09951.1| Ribosomal RNA small subunit methyltransferase B [Enterococcus sp.
GMD2E]
gi|404470468|gb|EKA15100.1| Ribosomal RNA small subunit methyltransferase B [Enterococcus sp.
GMD1E]
gi|410733779|gb|EKQ75701.1| ribosomal RNA small subunit methyltransferase B [Enterococcus sp.
GMD5E]
gi|425721976|gb|EKU84876.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
durans FB129-CNAB-4]
gi|430479840|gb|ELA57050.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E0333]
gi|430495754|gb|ELA71890.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1050]
gi|430537815|gb|ELA78130.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1133]
gi|430545066|gb|ELA85064.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1392]
gi|430550630|gb|ELA90413.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1573]
gi|430555235|gb|ELA94779.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1576]
gi|430559621|gb|ELA98969.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1578]
gi|430571946|gb|ELB10818.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1622]
gi|430576196|gb|ELB14865.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1623]
gi|430579151|gb|ELB17687.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1626]
gi|430589831|gb|ELB27931.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1731]
gi|430606266|gb|ELB43624.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E2134]
gi|430610889|gb|ELB48019.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E2297]
gi|430615645|gb|ELB52589.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E2883]
gi|430629037|gb|ELB65459.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1321]
gi|430632734|gb|ELB68935.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1644]
gi|430633560|gb|ELB69715.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E2369]
gi|430639847|gb|ELB75702.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E4389]
gi|445189529|gb|AGE31171.1| Ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium NRRL B-2354]
Length = 452
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 119/249 (47%), Gaps = 42/249 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDT--GTLIALDKSKPRVTKL 126
+Q+ S+L + ++P VLD CAAPG K THIA ++ + G ++ALD + +V +
Sbjct: 241 IQDESSMLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDPSCGGEVVALDVHEHKVKLI 300
Query: 127 EETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFY 185
E+ +L +SS + D+ ++ + + E FDRIL+DAPCSG G
Sbjct: 301 EDNAARLGVSSAVYAQKMDAREVSK---------QFEAEQFDRILVDAPCSGLG----LL 347
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ K+ AN+ K L+ + P LK GIL Y TC++ EEN+
Sbjct: 348 RRKPDIRYKKQPDELANLPKIQLEILESCA--------PTLKSSGILTYSTCTILKEENQ 399
Query: 246 AVIAWILHRHPEVELVQTL--PQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIG 303
V++ L RHP+ E + L P L Q+ ++ L P TD G
Sbjct: 400 DVVSAFLERHPDFERIDVLTNPML--------------QSSIEEKMLTLYPHQFYTD--G 443
Query: 304 FFICKLRKK 312
FFIC LRKK
Sbjct: 444 FFICCLRKK 452
>gi|418008220|ref|ZP_12648088.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
casei UW4]
gi|410547164|gb|EKQ21402.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
casei UW4]
Length = 446
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 88/247 (35%), Positives = 124/247 (50%), Gaps = 38/247 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMN--DTGTLIALDKSKPRVTKL 126
+Q+ S+L LD+QPG VLD CAAPG K THIA ++ G + ALD +V +
Sbjct: 234 MQDESSMLVAPSLDIQPGDAVLDACAAPGGKTTHIAQYLDPKQGGQVTALDLHANKVRLI 293
Query: 127 EETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFY 185
+ K+L L+ I V D+ ++ T+ SFD+IL+DAPCSG G
Sbjct: 294 NKNAKRLGLTDRIHAQVLDARKVATT---------FSANSFDKILVDAPCSGLG----LI 340
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ K + A++Q+ L A+ V+ P LK G L Y TC++ EEN+
Sbjct: 341 RRKPEIKYTKTPEDPAHLQQIQL-AILNSVA-------PTLKIGGRLTYSTCTMVKEENQ 392
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
V+A L HPE E V ++P L K L HK A + +Q F P D +TD GFF
Sbjct: 393 DVVAQFLAAHPEFEQV-SVPTL--KPL-HK---AHNAPALQLF-----PDDYDTD--GFF 438
Query: 306 ICKLRKK 312
I L ++
Sbjct: 439 IASLIRR 445
>gi|261206663|ref|ZP_05921361.1| fmu [Enterococcus faecium TC 6]
gi|289565024|ref|ZP_06445478.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium D344SRF]
gi|294614916|ref|ZP_06694807.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1636]
gi|425059192|ref|ZP_18462542.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 504]
gi|430824314|ref|ZP_19442878.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E0120]
gi|430829993|ref|ZP_19448062.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E0269]
gi|430835061|ref|ZP_19453060.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E0679]
gi|430851319|ref|ZP_19469069.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1185]
gi|430867720|ref|ZP_19482618.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1574]
gi|431216453|ref|ZP_19501204.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1620]
gi|431744819|ref|ZP_19533685.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E2071]
gi|260079156|gb|EEW66849.1| fmu [Enterococcus faecium TC 6]
gi|289163231|gb|EFD11077.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium D344SRF]
gi|291592202|gb|EFF23820.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1636]
gi|403036257|gb|EJY47614.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 504]
gi|430441329|gb|ELA51444.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E0120]
gi|430479311|gb|ELA56567.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E0269]
gi|430484729|gb|ELA61691.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E0679]
gi|430534281|gb|ELA74742.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1185]
gi|430550107|gb|ELA89916.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1574]
gi|430569818|gb|ELB08798.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1620]
gi|430604979|gb|ELB42401.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E2071]
Length = 452
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 119/249 (47%), Gaps = 42/249 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDT--GTLIALDKSKPRVTKL 126
+Q+ S+L + ++P VLD CAAPG K THIA ++ + G ++ALD + +V +
Sbjct: 241 IQDESSMLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDPSCGGEVVALDVHEHKVKLI 300
Query: 127 EETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFY 185
E+ +L +SS + D+ ++ + + E FDRIL+DAPCSG G
Sbjct: 301 EDNAARLGVSSAVYAQKMDAREVSK---------QFEAEQFDRILVDAPCSGLG----LL 347
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ K+ AN+ K L+ + P LK GIL Y TC++ EEN+
Sbjct: 348 RRKPDIRYKKQPDELANLPKIQLEILESCA--------PALKSSGILTYSTCTILKEENQ 399
Query: 246 AVIAWILHRHPEVELVQTL--PQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIG 303
V++ L RHP+ E + L P L Q+ ++ L P TD G
Sbjct: 400 DVVSAFLERHPDFERIDVLTNPML--------------QSSIEEKMLTLYPHQFYTD--G 443
Query: 304 FFICKLRKK 312
FFIC LRKK
Sbjct: 444 FFICCLRKK 452
>gi|229092908|ref|ZP_04224042.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus
Rock3-42]
gi|228690530|gb|EEL44313.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus
Rock3-42]
Length = 360
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 119/245 (48%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G +LD CAAPG K THIA + TG +++LD +V +++
Sbjct: 148 IQDESSMLVARALEPDEGDVILDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQ 207
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
++L L +++T D+ ++ E+FD+IL+DAPCSGFG + +
Sbjct: 208 QAERLGLENVETKALDARKVQEH---------FANETFDKILVDAPCSGFG--VIRRKPD 256
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 257 IKLGKDKGDSERLSTIQFAILEKIA-----------PLLKQGGRLVYSTCTIEKIENEQV 305
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E T+ + + L+ E + Q + F T GF+I
Sbjct: 306 IERFLQEHPEFEWDTTIKERMPEKLSPYMDEGQVQILPHYFA-----------TDGFYIA 354
Query: 308 KLRKK 312
LRKK
Sbjct: 355 CLRKK 359
>gi|430837175|ref|ZP_19455150.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E0680]
gi|430839961|ref|ZP_19457897.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E0688]
gi|430859193|ref|ZP_19476808.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1552]
gi|431387248|ref|ZP_19511611.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1627]
gi|431512488|ref|ZP_19515915.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1634]
gi|431668781|ref|ZP_19524143.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1904]
gi|430487605|gb|ELA64325.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E0680]
gi|430490201|gb|ELA66743.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E0688]
gi|430544035|gb|ELA84080.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1552]
gi|430580805|gb|ELB19271.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1627]
gi|430586407|gb|ELB24664.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1634]
gi|430599947|gb|ELB37629.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1904]
Length = 452
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 119/249 (47%), Gaps = 42/249 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDT--GTLIALDKSKPRVTKL 126
+Q+ S+L + ++P VLD CAAPG K THIA ++ + G ++ALD + +V +
Sbjct: 241 IQDESSMLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDPSCGGEVVALDVHEHKVKLI 300
Query: 127 EETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFY 185
E+ +L +SS + D+ ++ + + E FDRIL+DAPCSG G
Sbjct: 301 EDNAARLGVSSAVYAQKMDAREVSK---------QFEAEQFDRILVDAPCSGLG----LL 347
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ K+ AN+ K L+ + P LK GIL Y TC++ EEN+
Sbjct: 348 RRKPDIRYKKQPDELANLPKIQLEILESCA--------PALKSSGILTYSTCTILKEENQ 399
Query: 246 AVIAWILHRHPEVELVQTL--PQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIG 303
V++ L RHP+ E + L P L Q+ ++ L P TD G
Sbjct: 400 DVVSAFLERHPDFERIDVLTNPML--------------QSSIEEKMLTLYPHQFYTD--G 443
Query: 304 FFICKLRKK 312
FFIC LRKK
Sbjct: 444 FFICCLRKK 452
>gi|344278108|ref|XP_003410838.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 [Loxodonta
africana]
Length = 825
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 137/294 (46%), Gaps = 52/294 (17%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+ V DSS+ I P LAGHY L Q
Sbjct: 328 AQALINRGVNLDPLGKWSKTGLVVYDSSVPIGAT-PEYLAGHYMLQGASSMLPVMALAPQ 386
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDMC APG K ++IA LM +TG ++A D + R+ + + +L +++ YD
Sbjct: 387 EHERILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYD 446
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANI 203
+ FDR+LLDAPCSG G + + N D+K I+ A++
Sbjct: 447 GRQFPKVVG-----------GFDRVLLDAPCSGTGV--ISKDPAVKTNKDEKDIQRCAHL 493
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
QK+LL + V+ G G LVYCTCS+ VEENE V+ + L + V LV T
Sbjct: 494 QKELLLSAIDSVNATSKTG-------GYLVYCTCSIMVEENEWVVDYALKKR-NVRLVPT 545
Query: 264 LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
G +G + +RF P L T R N D GFFI K +K
Sbjct: 546 GLDFGQEGFT--------RFRERRFHPSLRSTRRFYPHTHNMD--GFFIAKFKK 589
>gi|169626371|ref|XP_001806586.1| hypothetical protein SNOG_16472 [Phaeosphaeria nodorum SN15]
gi|160705823|gb|EAT76170.2| hypothetical protein SNOG_16472 [Phaeosphaeria nodorum SN15]
Length = 725
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 97/295 (32%), Positives = 137/295 (46%), Gaps = 51/295 (17%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV +E S+V + + S L P LAGHY L Q
Sbjct: 313 AQSLINRGVQLEPVGKWSKV-GLQIFESQVPLGATPEYLAGHYILQAASSFLPVMALAPQ 371
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL-SSIQTHVY 143
++VLDM AAPG K THIA LM +TG + A D +K R L I +L + +S+ H
Sbjct: 372 EHERVLDMTAAPGGKTTHIAALMKNTGCIFANDANKDRAKGLIGNIHRLGVRNSVVCHY- 430
Query: 144 DSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLN-LDKKIKSYAN 202
S ++ R+ FDR+LLDAPCSG G + +A+ N + +
Sbjct: 431 --------SALEFPRV---MGGFDRVLLDAPCSGTGV--IAKDASVKTNKTEADFMKLPH 477
Query: 203 IQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQ 262
+QK+L+ + V G G +VY TCS++VEENE VI + L++ P V+LV+
Sbjct: 478 LQKQLILSAIDSVDHHSKTG-------GYIVYSTCSVTVEENEQVIQYALNKRPNVKLVE 530
Query: 263 TLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKKYGEAP 317
T G +G + A R+ P D GFF+ K KK G P
Sbjct: 531 TGLTFGKEGFTN-------IAGKVRYYPHTYNVD------GFFVAKF-KKIGPTP 571
>gi|385198063|ref|NP_001245239.1| putative ribosomal RNA methyltransferase NOP2 isoform 4 [Homo
sapiens]
gi|116284068|gb|AAH82985.1| NOP2 protein [Homo sapiens]
Length = 628
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 96/301 (31%), Positives = 139/301 (46%), Gaps = 52/301 (17%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+ V DSS+ I P LAGHY L Q
Sbjct: 321 AQALINRGVNLDPLGKWSKTGLVVYDSSVPIGAT-PEYLAGHYMLQGASSMLPVMALAPQ 379
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDMC APG K +++A LM +TG ++A D + R+ + + +L +++ YD
Sbjct: 380 EHERILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYD 439
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANI 203
+ FDR+LLDAPCSG G + + N D+K I A++
Sbjct: 440 GRQFPKVVG-----------GFDRVLLDAPCSGTGV--ISKDPAVKTNKDEKDILRCAHL 486
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
QK+LL + V+ G G LVYCTCS++VEENE V+ + L + V LV T
Sbjct: 487 QKELLLSAIDSVNATSKTG-------GYLVYCTCSITVEENEWVVDYALKKR-NVRLVPT 538
Query: 264 LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRKKYGEAP 317
G +G + +RF P L T R N D GFFI K +K P
Sbjct: 539 GLDFGQEGFT--------RFRERRFHPSLRSTRRFYPHTHNMD--GFFIAKFKKFSNSIP 588
Query: 318 E 318
+
Sbjct: 589 Q 589
>gi|359403639|ref|ZP_09196543.1| putative rRNA small subunit methyltransferase B [Spiroplasma
melliferum KC3]
gi|438119635|ref|ZP_20871755.1| RNA-binding Sun protein [Spiroplasma melliferum IPMB4A]
gi|358832870|gb|EHK51974.1| putative rRNA small subunit methyltransferase B [Spiroplasma
melliferum KC3]
gi|434155383|gb|ELL44336.1| RNA-binding Sun protein [Spiroplasma melliferum IPMB4A]
Length = 423
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 122/246 (49%), Gaps = 55/246 (22%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+ LD Q +VLDMC+APG K TH++ +MN+ G + A D S+ ++ ++
Sbjct: 229 IQDEMSMRIAEILDPQETDRVLDMCSAPGGKATHLSQIMNNKGIIDAYDISEKKINLIKM 288
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG--QRPMFYN 186
+L +++I H+ D+ +IN+ Q +D+IL DAPCSG G +R
Sbjct: 289 NASRLGITNIYPHLLDARKINSEIQ------------YDKILCDAPCSGLGVIKRKPEIK 336
Query: 187 ANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEA 246
++ N +++ + IQ++LL+ Y+ LLK GILVY TC+ EN
Sbjct: 337 YHTLTN--QELANLVEIQEQLLEKAYQ-----------LLKPGGILVYSTCTFGGYENIV 383
Query: 247 VIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFI 306
I L +HP+++++ T Q FG + NTD GF+
Sbjct: 384 QIRNFLAKHPDLKIITT---------------------EQIFG-----YENNTD--GFYY 415
Query: 307 CKLRKK 312
CK+RKK
Sbjct: 416 CKIRKK 421
>gi|386319520|ref|YP_006015683.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
pseudintermedius ED99]
gi|323464691|gb|ADX76844.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
pseudintermedius ED99]
Length = 433
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 118/252 (46%), Gaps = 58/252 (23%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+ Y+++QPG VLD C+APG K H+A ++ND GT++A D ++ ++
Sbjct: 231 IQDKSSMFVAEYMELQPGDAVLDSCSAPGGKACHMAEILNDQGTVLATDVHAHKIQLIDH 290
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
I+KL L+ I+ +D+T + + FD++LLDAPCSG G +P
Sbjct: 291 NIRKLHLTGIRAMQHDAT-------------QPYDQQFDKVLLDAPCSGLGVLRHKPEI- 336
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
++ + +K ++Q +++ V + LK G +VY TC++ EN+
Sbjct: 337 ---KYVITPQDVKGLVDLQLRIIDNVSKH-----------LKAGGTMVYSTCTIEQLEND 382
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPP-----LIPTDRNTD 300
VI L HP+ E D R P L+P D + D
Sbjct: 383 NVIYTFLKSHPDFEF--------------------DPIEDPRTHEPVKTLQLLPQDMHAD 422
Query: 301 TIGFFICKLRKK 312
GFFI ++RKK
Sbjct: 423 --GFFITRVRKK 432
>gi|84994868|ref|XP_952156.1| nucleolar protein [Theileria annulata strain Ankara]
gi|65302317|emb|CAI74424.1| nucleolar protein, putative [Theileria annulata]
Length = 463
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 87/252 (34%), Positives = 125/252 (49%), Gaps = 40/252 (15%)
Query: 73 PSILAGHY-------------LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKS 119
P LAGHY L +P + +LDMCAAPG K THI LMN+TG L A D +
Sbjct: 237 PEYLAGHYILQSASSLIPVLSLSPKPNEMILDMCAAPGGKTTHIGQLMNNTGILFANDSN 296
Query: 120 KPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG 179
K R L I +L + +S N + E +K+ + DRILLDAPCSG G
Sbjct: 297 KQRCKSLVSNIHRLG-------ILNSIVCNYKGE---ELLKVLPK-MDRILLDAPCSGLG 345
Query: 180 QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSL 239
+ NL K ++ +N+QK+LL I L+K +GI+VY TCSL
Sbjct: 346 VISRDPSIKIKRNL-KDLQRNSNLQKQLLSV-----------SINLVKPNGIIVYSTCSL 393
Query: 240 SVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNT 299
S+EENE V+ + L + ++L+ ++G +++ + ++ +F P N
Sbjct: 394 SIEENEQVLHYCLKKF-NIKLLPLGLEIGSPAISNFRGKKFHPSI-SKFARRFYPHKHNL 451
Query: 300 DTIGFFICKLRK 311
D GFFI K+ K
Sbjct: 452 D--GFFIAKIIK 461
>gi|342320777|gb|EGU12716.1| Nucleolar protein NOP2 [Rhodotorula glutinis ATCC 204091]
Length = 749
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 123/253 (48%), Gaps = 46/253 (18%)
Query: 73 PSILAGHY-------------LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKS 119
P LAGHY LD QP ++ LDM AAPG K T+++ LM +TG + A D S
Sbjct: 440 PEYLAGHYILQAASSFLPVMALDPQPHERCLDMSAAPGGKTTYMSALMGNTGEVWANDSS 499
Query: 120 KPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG 179
+ R+ L + +L ++ + +D FDR+LLDAPCSG G
Sbjct: 500 RGRIKGLGGNVARLGCRNV-----------VITNVDGREFPKIMGGFDRVLLDAPCSGTG 548
Query: 180 QRPMFYNANSFLNLDKKIKSY---ANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT 236
+ + + ++K + + +++QK+LL VS P +K G + Y T
Sbjct: 549 ----VISKDPSVKVNKTERDFMLLSHLQKQLLLCAIDSVS-------PNSEKGGYVCYST 597
Query: 237 CSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGL-AHKDLE-AEDQAVMQRFGPPLIP 294
CS++VEENEAV+++ L + P V+LV T G G ++K E + + +RF P +
Sbjct: 598 CSVTVEENEAVVSYALRKRPHVKLVDTGLPFGKPGFKSYKGKEFGKGIELTRRFYPHVAN 657
Query: 295 TDRNTDTIGFFIC 307
D GFF+
Sbjct: 658 VD------GFFVS 664
>gi|449301057|gb|EMC97068.1| hypothetical protein BAUCODRAFT_68561 [Baudoinia compniacensis UAMH
10762]
Length = 663
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 95/305 (31%), Positives = 138/305 (45%), Gaps = 68/305 (22%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V + + S L P LAG Y L Q +
Sbjct: 312 LINRGVTLEPVGKWSKV-GLQIFESQVPLGATPEYLAGQYILQAASSFLPVMALAPQEHE 370
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+ LDM AAPG K TH+A LM +TG + A D +K R L I ++ + +T
Sbjct: 371 RCLDMAAAPGGKTTHMAALMRNTGCIFANDANKSRAKALIGNIHRMGVK--------NTI 422
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYA------ 201
+ S ++ R+ FDR+LLDAPCSG G + D +K++
Sbjct: 423 VCNYSALEFPRV---MGGFDRVLLDAPCSGTG----------VIAKDASVKTHKTPEDFL 469
Query: 202 ---NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEV 258
++QK+LL + V G G +VY TCS++VEENE V+ ++L++ P V
Sbjct: 470 RLPHLQKQLLLSAIDSVDHASKTG-------GYIVYSTCSVTVEENEQVVQYVLNKRPNV 522
Query: 259 ELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRKK 312
LV T G +G + + +RF P + T R N D GFF+ KL KK
Sbjct: 523 RLVSTGLVFGREGFV--------KYMGKRFHPSMKETRRFYPHAYNVD--GFFVAKL-KK 571
Query: 313 YGEAP 317
G P
Sbjct: 572 TGPTP 576
>gi|344304004|gb|EGW34253.1| hypothetical protein SPAPADRAFT_59678, partial [Spathaspora
passalidarum NRRL Y-27907]
Length = 581
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 93/296 (31%), Positives = 132/296 (44%), Gaps = 55/296 (18%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ ++V DS + I P LAGHY L Q
Sbjct: 269 AQKLVNRGVNLQPIGSWTKVGLQIFDSQVPIGAT-PEYLAGHYILQAASSFLPVMALAPQ 327
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
++VLDM AAPG K T+I+ LM +TG + A D +K R L I +L + YD
Sbjct: 328 ENERVLDMAAAPGGKTTYISALMKNTGCVFANDANKARTKSLIANIHRLGCKNTIVCNYD 387
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANI- 203
+ FDR+LLDAPCSG G + + + + K + I
Sbjct: 388 AREFPKVIG-----------GFDRVLLDAPCSGTG----VIAKDEGVKVRRTEKDFIQIP 432
Query: 204 --QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
QK+LL + V G GI+VY TCS++V+ENE+V+ + L + P V+LV
Sbjct: 433 HLQKQLLLSAIDSVDANSPTG-------GIIVYSTCSVAVDENESVVDYALRKRPNVKLV 485
Query: 262 QTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
T Q+G +G + F P L T R N D GFF+ K +K
Sbjct: 486 DTELQIGKEGFT--------SYRGKHFNPKLSLTRRYYPHTYNVD--GFFVAKFKK 531
>gi|424813754|ref|ZP_18238937.1| NOL1/NOP2/sun family protein [Candidatus Nanosalina sp. J07AB43]
gi|339758480|gb|EGQ43736.1| NOL1/NOP2/sun family protein [Candidatus Nanosalina sp. J07AB43]
Length = 222
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 102/187 (54%), Gaps = 30/187 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q + L L+ +PG+KVLDMCAAPG K T IA MN+ G +IA DK+ R+ L
Sbjct: 10 VQEESAALPVQVLNPEPGEKVLDMCAAPGGKTTQIASKMNNKGIVIANDKNPKRLKSLHA 69
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQ--RPMFYN 186
I + ++ YD RI ++ +D+IL+DAPCSG G R F +
Sbjct: 70 NIYRTGSTAANVVNYDGRRI------------PKELKYDKILVDAPCSGEGNNSRRSFKS 117
Query: 187 ANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEA 246
A+ ++++K+ +N+Q+KLL+ + LLK+DG +VY TC+ + EENE+
Sbjct: 118 AS-----EQELKTLSNVQQKLLENAEK-----------LLKEDGRIVYSTCTFAPEENES 161
Query: 247 VIAWILH 253
V+ L
Sbjct: 162 VVEKTLE 168
>gi|425055273|ref|ZP_18458754.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 505]
gi|403034215|gb|EJY45679.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 505]
Length = 452
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 120/247 (48%), Gaps = 38/247 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDT--GTLIALDKSKPRVTKL 126
+Q+ S+L + ++P VLD CAAPG K THIA ++ + G +IALD + +V +
Sbjct: 241 IQDESSMLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDPSCGGEVIALDVHEHKVKLI 300
Query: 127 EETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFY 185
EE +L +SS + D+ ++ + + E FDRIL+DAPCSG G
Sbjct: 301 EENATRLGVSSAVYAQKMDAREVSK---------QFEPEQFDRILVDAPCSGLG----LL 347
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ K+ AN+ K L+ + P LK GIL Y TC++ EEN+
Sbjct: 348 RRKPDIRYKKQPDELANLPKIQLEILESCA--------PALKSSGILTYSTCTILKEENQ 399
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
V++ L RHP+ E + L ++ +++++ L P TD GFF
Sbjct: 400 DVVSAFLERHPDFERIDVLTDPMLQS-----------SIVEKM-LTLYPHQFYTD--GFF 445
Query: 306 ICKLRKK 312
IC LRKK
Sbjct: 446 ICCLRKK 452
>gi|254576911|ref|XP_002494442.1| ZYRO0A01562p [Zygosaccharomyces rouxii]
gi|238937331|emb|CAR25509.1| ZYRO0A01562p [Zygosaccharomyces rouxii]
Length = 617
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 88/269 (32%), Positives = 125/269 (46%), Gaps = 44/269 (16%)
Query: 55 SQVPNVALDSSMG---ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTG 111
SQVP A + ILQ S L LD Q +++LDM AAPG K T+I+ LM +TG
Sbjct: 313 SQVPIGATPEYLAGNYILQAASSFLPVIALDPQENERILDMAAAPGGKTTYISALMKNTG 372
Query: 112 TLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILL 171
+ A D +K R L I +L ++ YD+ FDRILL
Sbjct: 373 CVFANDANKSRTKSLVANIHRLGCTNTIVCNYDAREFPRVIG-----------GFDRILL 421
Query: 172 DAPCSGFGQRPMFYNANSFLNLDKKIKSYANI---QKKLLQAVYRFVSLFDWQGIPLLKK 228
DAPCSG G + + + + K + I QK+LL + V G
Sbjct: 422 DAPCSGTG----VIGKDQSVKVSRTEKDFMQIPHLQKQLLLSAIDSVDSHSKTG------ 471
Query: 229 DGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRF 288
GI+VY TCS++VEE+E V+ + L + P ++L++T +G +G A ++F
Sbjct: 472 -GIIVYSTCSVAVEEDEQVVDYALRKRPNIKLIETGLAIGKEGFA--------SYRGKKF 522
Query: 289 GPPLIPTDR------NTDTIGFFICKLRK 311
P L T R N D GFF+ K +K
Sbjct: 523 HPSLKLTRRYYPHTYNVD--GFFVAKFQK 549
>gi|238754203|ref|ZP_04615561.1| Ribosomal RNA small subunit methyltransferase B [Yersinia ruckeri
ATCC 29473]
gi|238707699|gb|EEQ00059.1| Ribosomal RNA small subunit methyltransferase B [Yersinia ruckeri
ATCC 29473]
Length = 429
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 108/201 (53%), Gaps = 31/201 (15%)
Query: 81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQT 140
LD Q G+++LD+CAAPG K THI L ++A+D + R+++++E +++LQL + T
Sbjct: 242 LDPQNGEQILDLCAAPGGKTTHI-LEAAPKSHVLAVDIDEQRLSRVKENLQRLQLHATVT 300
Query: 141 HVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKI 197
V D + + FDRILLDAPCS G + P +L D I
Sbjct: 301 -VGDGRAPDKWCG---------NQLFDRILLDAPCSATGVIRRHPDI----KWLRRDSDI 346
Query: 198 KSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPE 257
A +Q ++L+A++ P LKKDG++VY TCS+ EEN+ IA L RHPE
Sbjct: 347 AELAQLQSEILEAIW-----------PKLKKDGVMVYATCSILPEENQQQIANFLQRHPE 395
Query: 258 VELVQ--TLPQLGMKGLAHKD 276
LV+ T Q G + L H +
Sbjct: 396 ARLVETGTPAQPGKQNLPHPE 416
>gi|229031495|ref|ZP_04187495.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH1271]
gi|228729784|gb|EEL80764.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH1271]
Length = 402
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 117/247 (47%), Gaps = 38/247 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L LD G VLD CAAPG K THIA + TG +++LD +V +++
Sbjct: 190 IQDESSMLVARALDPNEGDVVLDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQ 249
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
++L L +++T D+ ++ E+FD+IL+DAPCSGFG ++P
Sbjct: 250 QAERLGLENVETKALDARKVQEH---------FANETFDKILVDAPCSGFGVIRRKPDIK 300
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ + ++ + IQ +L+ + PLLK+ G LVY TC++ ENE
Sbjct: 301 LGKNKGDSER----LSTIQLAILEKI-----------APLLKQGGRLVYSTCTIEKIENE 345
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
VI L HPE E T+ K + L R P TD GF+
Sbjct: 346 QVIKQFLQEHPEFEWDTTI-----KNRMPEKLNPYIDEGQVRILPHYFATD------GFY 394
Query: 306 ICKLRKK 312
I LRKK
Sbjct: 395 IACLRKK 401
>gi|423395834|ref|ZP_17373035.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG2X1-1]
gi|401653576|gb|EJS71120.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG2X1-1]
Length = 444
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 117/245 (47%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G VLD CAAPG K THIA + TG +++LD +V +++
Sbjct: 232 IQDESSMLVARALEPDEGDVVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQ 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
+L L +++T D+ ++ ESFD+IL+DAPCSGFG + +
Sbjct: 292 QADRLGLENVETKALDARKVQEH---------FANESFDKILVDAPCSGFG--VIRRKPD 340
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 341 IKLGKDKGDSERLSTIQLAILEKI-----------APLLKQGGRLVYSTCTIEKIENEQV 389
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E T+ + L+ E + R P TD GF+I
Sbjct: 390 IKQFLQEHPEFEWDTTIKDRMPEKLSPYIDEGQ-----VRILPHYFATD------GFYIA 438
Query: 308 KLRKK 312
LRKK
Sbjct: 439 CLRKK 443
>gi|417993140|ref|ZP_12633490.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
casei CRF28]
gi|410532052|gb|EKQ06763.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
casei CRF28]
Length = 329
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 90/248 (36%), Positives = 125/248 (50%), Gaps = 39/248 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMN--DTGTLIALDKSKPRVTKL 126
+Q+ S+L LD+QPG VLD CAAPG K THIA ++ G + ALD +V +
Sbjct: 117 MQDESSMLVAPSLDIQPGDVVLDACAAPGGKTTHIAQYLDPKQGGQVTALDLHANKVRLI 176
Query: 127 EETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFY 185
+ K+L L+ I V D+ ++ T+ SFD+IL+DAPCSG G
Sbjct: 177 NKNAKRLGLTDRIHAQVLDARKVATT---------FSANSFDKILVDAPCSGLG----LI 223
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ K + A++Q+ L A+ V+ P LK G L Y TC++ EEN+
Sbjct: 224 RRKPEIKYTKTPEDPAHLQQIQL-AILNSVA-------PTLKIGGRLTYSTCTMVKEENQ 275
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
V+A L HPE E V ++P L K L HK A + +Q F P D +TD GFF
Sbjct: 276 DVVAQFLAAHPEFEQV-SVPTL--KPL-HK---AHNAPALQLF-----PDDYDTD--GFF 321
Query: 306 ICKL-RKK 312
I L R+K
Sbjct: 322 IASLIRRK 329
>gi|229180141|ref|ZP_04307485.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
172560W]
gi|228603350|gb|EEK60827.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
172560W]
Length = 429
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 117/245 (47%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G VLD CAAPG K HIA + TG +++LD +V +++
Sbjct: 217 IQDESSMLVARALEPNTGDAVLDSCAAPGGKTAHIAERLKGTGKVMSLDLHAHKVRLIKQ 276
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
++L L +++T D+ ++ E+FD+IL+DAPCSGFG + +
Sbjct: 277 QAERLGLENVETKALDARKVQEH---------FANETFDKILVDAPCSGFG--VIRRKPD 325
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 326 IKLGKDKGDSERLSTIQIAILEKI-----------APLLKQGGRLVYSTCTIEKIENEQV 374
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E TL + + L E + Q + F T GF+I
Sbjct: 375 IEKFLQEHPEFEWDTTLKERMPEKLTPYIDEGQVQILPHYFA-----------TDGFYIA 423
Query: 308 KLRKK 312
LRKK
Sbjct: 424 CLRKK 428
>gi|345560409|gb|EGX43534.1| hypothetical protein AOL_s00215g270 [Arthrobotrys oligospora ATCC
24927]
Length = 745
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 91/288 (31%), Positives = 132/288 (45%), Gaps = 45/288 (15%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +S + L P LAGHY L Q +
Sbjct: 334 LINRGVTLEPVGKWSKVGLQVFESQV-PLGATPEYLAGHYILQAASSFLPVMALAPQENE 392
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+ LDM AAPG K T++A LM +TG + A D +K R L I +L + + YD+
Sbjct: 393 RCLDMAAAPGGKTTYMAALMKNTGCIFANDANKNRAKGLIGNIHRLGVKNTIVCNYDARE 452
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY---ANIQ 204
FDR+LLDAPCSG G ++ + +K K + ++Q
Sbjct: 453 FPKVIG-----------GFDRVLLDAPCSGTG----VIAKDASVKTNKTEKDFLKLPHLQ 497
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL 264
K+LL A V G G +VY TCS++VEENE V+ + L + P V+LV T
Sbjct: 498 KQLLLAAIDSVDHNSKTG-------GYIVYSTCSVTVEENEGVVEYALKKRPNVKLVDTG 550
Query: 265 PQLGMKG-LAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
G++G ++ + D+ M R P N D GF++ K RK
Sbjct: 551 LTFGVEGFVSFRGKTFNDKMKMTRR---YYPHKYNVD--GFYVAKFRK 593
>gi|363891855|ref|ZP_09319030.1| ribosomal RNA small subunit methyltransferase B [Eubacteriaceae
bacterium CM2]
gi|361964850|gb|EHL17856.1| ribosomal RNA small subunit methyltransferase B [Eubacteriaceae
bacterium CM2]
Length = 436
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 121/245 (49%), Gaps = 55/245 (22%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+ A L +P + VLD+CAAPG K +A LM + G++ +LD S ++ LEE
Sbjct: 241 VQDYASMKAVLALSPEPFENVLDICAAPGGKSVFMAELMGNKGSITSLDISSKKLKLLEE 300
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG--QRPMFYN 186
K+L ++ I+T+V D+T + K FD++L D PCSG G +R
Sbjct: 301 QAKRLGINIIKTYVNDATIYKSE----------YKNKFDKVLCDVPCSGIGILRRKPEIR 350
Query: 187 ANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEA 246
F + I++ ++QK++L+ SL+ LKKDGILVY TC+L EEN
Sbjct: 351 YKKF----EDIQNIIDVQKQILKN----ASLY-------LKKDGILVYSTCTLGKEENSD 395
Query: 247 VIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFI 306
+I+ L ++ EL+ + + P + TD GFF+
Sbjct: 396 IISEFLSKNINFELI----------------------FQKEYYPHIDSTD------GFFV 427
Query: 307 CKLRK 311
CK+RK
Sbjct: 428 CKMRK 432
>gi|434398098|ref|YP_007132102.1| sun protein [Stanieria cyanosphaera PCC 7437]
gi|428269195|gb|AFZ35136.1| sun protein [Stanieria cyanosphaera PCC 7437]
Length = 453
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 127/263 (48%), Gaps = 41/263 (15%)
Query: 54 LSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTL 113
++Q+P ++ ++Q+ + L H LD QPG+ ++D CAAPG K THIA L+ D G +
Sbjct: 229 INQLP--GYEAGWWMVQDSSAQLVTHLLDPQPGETIVDACAAPGGKTTHIAELIKDQGVI 286
Query: 114 IALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDA 173
A D S+ R+ K++E ++LQL SI+ DS N + Q + K DR+LLDA
Sbjct: 287 YACDLSEKRLNKVQENAQRLQLKSIKICPGDSR--NRTVQCN------SKFLVDRVLLDA 338
Query: 174 PCSGFG---QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDG 230
PCSG G +RP + ++ I + W +K G
Sbjct: 339 PCSGLGTLHKRPDI----------RWRQTLTKIGELSQLQQQLLNQAATW-----VKPGG 383
Query: 231 ILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGP 290
I+VY TC+L+ ENE VI L HPE ++ ++ D A A +
Sbjct: 384 IIVYATCTLNRLENEVVIESFLQSHPEWQIESSV----------FDSPANHFATFPGW-I 432
Query: 291 PLIPTDRNTDTIGFFICKLRKKY 313
+ P N D GFF+ KL++++
Sbjct: 433 KVFPHKHNMD--GFFMVKLQREF 453
>gi|392948710|ref|ZP_10314313.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
pentosus KCA1]
gi|392435987|gb|EIW13908.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
pentosus KCA1]
Length = 447
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 89/258 (34%), Positives = 131/258 (50%), Gaps = 44/258 (17%)
Query: 61 ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIA--LLMNDTGTLIALDK 118
A+ M +Q+ + L L+ QPG +VLD CAAPG K T IA L + G ++ALD
Sbjct: 228 AMRYGMFTVQDESAQLVVPALNPQPGDRVLDACAAPGGKTTQIAAELDADAGGEVVALDI 287
Query: 119 SKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ--KESFDRILLDAPCS 176
+V + + ++ HV D ++++D +++ Q ESFDRIL+DAPCS
Sbjct: 288 HANKVRLIGQNAARM-------HVADRV---AATELDARKVQTQFDDESFDRILVDAPCS 337
Query: 177 GFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT 236
G G + +K+++ N+QK L A+ V+ P LKK GI+ Y T
Sbjct: 338 GLG----LMRRKPEIRYEKQLQDSLNLQKIQL-AILTAVA-------PTLKKGGIMTYST 385
Query: 237 CSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAE--DQAVMQRFGPPLIP 294
C++ +EN+ VI L HPE EL QT P +DL+A+ D+ + + P
Sbjct: 386 CTILQQENQDVIVKFLADHPEFEL-QTTP-------TEQDLKADRTDKTL------SIYP 431
Query: 295 TDRNTDTIGFFICKLRKK 312
D +D GFFI LRKK
Sbjct: 432 DDYLSD--GFFIACLRKK 447
>gi|326203177|ref|ZP_08193043.1| sun protein [Clostridium papyrosolvens DSM 2782]
gi|325986823|gb|EGD47653.1| sun protein [Clostridium papyrosolvens DSM 2782]
Length = 467
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 133/249 (53%), Gaps = 43/249 (17%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+LAG LD + G+ V+D+C+APG K THIA +MN+ GT++A D + ++ +E+
Sbjct: 256 VQDESSMLAGKILDPKEGETVIDVCSAPGGKATHIAQIMNNNGTVLARDIYEHKLNLIEQ 315
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
+ ++L + I+T ++D+ DI+ + K DR+L+DAPCSG G ++P
Sbjct: 316 SCRRLGIDIIKTEIHDAC--------DIDENLIGKA--DRVLIDAPCSGLGIIRKKPDI- 364
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ + ++K ++Q+K+L R+ LK G L+Y TC++ +EN
Sbjct: 365 ---KYSRTENELKEITDLQQKILNIAARY-----------LKVGGYLIYSTCTIQPQENL 410
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGL--AHKDLEAEDQAVMQRFGPPLIPTDRNTDTIG 303
++ L ++ +L G + L + D+ + ++ +Q L P TD G
Sbjct: 411 EIVQDFLAKNAGFKLS------GFRELMPSALDISSSEEGYIQ-----LYPNINQTD--G 457
Query: 304 FFICKLRKK 312
FFI K++++
Sbjct: 458 FFISKIKRE 466
>gi|118444654|ref|YP_878315.1| sun protein [Clostridium novyi NT]
gi|118135110|gb|ABK62154.1| sun protein [Clostridium novyi NT]
Length = 443
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 122/246 (49%), Gaps = 42/246 (17%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ ++L +D + G VLD+C+APG K THI+ +MN+TG + A D + +++ ++E
Sbjct: 235 VQDESAMLVAPSIDAKEGATVLDLCSAPGGKTTHISEIMNNTGIVKAFDIHENKLSLVKE 294
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
K+L + +I D+++ N K + S D +L+D PCSG G ++P
Sbjct: 295 NAKRLGIDNISCAEMDASKFN----------KELENSADMVLIDVPCSGLGIIRKKPEI- 343
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ K K IQKK+++ ++V KK+G L+Y TC+++ EENE
Sbjct: 344 ---KYTKDIKSTKDIVAIQKKIMENAAKYV-----------KKEGTLLYSTCTINKEENE 389
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
I W + + PE + V+ L M + + G I ++ D GFF
Sbjct: 390 KNINWFIKKFPEYK-VEPLFYGNMSNI-----------IYNENGTVTILPNKYMD--GFF 435
Query: 306 ICKLRK 311
I KL+K
Sbjct: 436 IAKLKK 441
>gi|354545845|emb|CCE42574.1| hypothetical protein CPAR2_202170 [Candida parapsilosis]
Length = 629
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 89/269 (33%), Positives = 123/269 (45%), Gaps = 44/269 (16%)
Query: 55 SQVPNVALDSSMG---ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTG 111
SQVP A + ILQ S L LD + +++LDM AAPG K T+I+ LM +TG
Sbjct: 327 SQVPIGATPEYLAGQYILQAASSFLPVIALDPKENERILDMAAAPGGKTTYISALMKNTG 386
Query: 112 TLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILL 171
+ A D +K R L I +L + YD+ FDRILL
Sbjct: 387 CVFANDANKARTKSLIANIHRLGCKNTIVCNYDAREFPKVIG-----------GFDRILL 435
Query: 172 DAPCSGFGQRPMFYNANSFLNLDKKIKSYANI---QKKLLQAVYRFVSLFDWQGIPLLKK 228
DAPCSG G + + + + K + I QK+LL + V G
Sbjct: 436 DAPCSGTG----VIAKDESVKVSRTEKDFMQIPHLQKQLLLSAIDSVDANSSTG------ 485
Query: 229 DGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRF 288
GI+VY TCS++VEENEAV+ + L + P V+LV+T +G +G + F
Sbjct: 486 -GIIVYSTCSVAVEENEAVVDYALRKRPNVKLVETGLAIGKEGFT--------SYRGRHF 536
Query: 289 GPPLIPTDR------NTDTIGFFICKLRK 311
P L T R N D GF++ K +K
Sbjct: 537 NPKLNLTRRYYPHIYNVD--GFYVAKFKK 563
>gi|268316267|ref|YP_003289986.1| RNA methylase [Rhodothermus marinus DSM 4252]
gi|262333801|gb|ACY47598.1| RNA methylase, NOL1/NOP2/sun family [Rhodothermus marinus DSM 4252]
Length = 321
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 79/255 (30%), Positives = 129/255 (50%), Gaps = 45/255 (17%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+L S+L L +P +VLD+CAAPG+K +A LM G + A++ +PR +L+
Sbjct: 93 VQDLASMLPPLVLAPEPDARVLDLCAAPGSKTLQLACLMQGRGEIAAVEVVRPRFYRLKA 152
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
++ +++ ++ D TR+ + + ESFD +L+DAPCS G R + +
Sbjct: 153 NVQAYGAPNVRLYLQDGTRVG----------RYRPESFDYVLVDAPCSSEG-RFHLSDPD 201
Query: 189 SFLNLD-KKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
+F +KI+ A Q +LL + + L+ G+LVY TC+++ EENEAV
Sbjct: 202 TFAYWSPRKIREMARKQYRLLVS-----------AVQSLRPGGVLVYATCTMAPEENEAV 250
Query: 248 IAWILHRHPEVELVQT--------LPQL-GMKGLA-HKDLEAEDQAVMQRFGPPLIPTDR 297
+ +L V V+ LP L +G + H DL R ++PT
Sbjct: 251 LDRLLRTFDGVLTVEPLDLPVSNQLPGLESWEGRSFHPDL---------RHARRILPT-- 299
Query: 298 NTDTIGFFICKLRKK 312
T+ GFF+C+LRK+
Sbjct: 300 -TEMEGFFLCRLRKR 313
>gi|52141623|ref|YP_085206.1| sun protein [Bacillus cereus E33L]
gi|51975092|gb|AAU16642.1| sun protein [Bacillus cereus E33L]
Length = 444
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 118/245 (48%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G VLD CAAPG K THIA + TG +++LD +V +++
Sbjct: 232 IQDESSMLVARALEPDEGDVVLDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQ 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
++L L +++T D+ ++ E+FD+IL+DAPCSGFG + +
Sbjct: 292 QAERLGLENVETKALDARKVQEH---------FANETFDKILVDAPCSGFG--VIRRKPD 340
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 341 IKLGKDKGDSERLSTIQFAILEKI-----------APLLKQGGRLVYSTCTIEKIENEQV 389
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E T+ + L+ E + Q + F T GF+I
Sbjct: 390 IERFLQEHPEFEWDTTIKDRMPEKLSPYMDEGQVQILPHYFA-----------TDGFYIA 438
Query: 308 KLRKK 312
LRKK
Sbjct: 439 CLRKK 443
>gi|308159767|gb|EFO62287.1| Nucleolar protein NOP2 [Giardia lamblia P15]
Length = 502
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 126/249 (50%), Gaps = 32/249 (12%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
++Q+ S L L+ +PG+++LDM AAPG K TH+ LM D+G ++A D ++ R+ L+
Sbjct: 281 MIQDAASFLPPMALNPKPGERILDMSAAPGGKTTHLGALMQDSGMILANDMNRDRIPALQ 340
Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG--QRPMFY 185
+ ++ ++ D+ + + +FDR+LLDAPC+G G +
Sbjct: 341 ANLARMGVTCAVISCSDARELTQCTG-----------NFDRVLLDAPCTGLGVVSKDASI 389
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
AN + + +++QK+LL + +S P L + Y TCS+++ ENE
Sbjct: 390 KANRTFD---DMHRLSHLQKELLNHAFDLLS--KHPSSPRL-----VCYSTCSVTLSENE 439
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAV--MQRFGPPLIPTDRNTDTIG 303
AVI +ILH+ VE+V G G+ + + A+ +RF P + +T G
Sbjct: 440 AVIDYILHKR-NVEVVDLPFSFGKPGITRFNGMSYHPAIRKARRFYPHI------HNTHG 492
Query: 304 FFICKLRKK 312
FFIC LR K
Sbjct: 493 FFICLLRLK 501
>gi|218778410|ref|YP_002429728.1| sun protein [Desulfatibacillum alkenivorans AK-01]
gi|218759794|gb|ACL02260.1| sun protein [Desulfatibacillum alkenivorans AK-01]
Length = 455
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 126/247 (51%), Gaps = 40/247 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S + LD +PG+KVLD CA G+K +HIA LM +TG ++A D ++ KLEE
Sbjct: 245 VQDAASQMTALCLDPRPGEKVLDACAGLGSKTSHIAQLMENTGEILAADLEPGKLKKLEE 304
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG--QRPMFYN 186
+ +L++S ++TH D TR + L+ + FD++L+DAPC+G G +R
Sbjct: 305 EMARLKVSIVKTHALDFTR----------ELSLEPQGFDKVLVDAPCTGLGVIRRNPDSK 354
Query: 187 ANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEA 246
+ LN I +A +Q +L + L++ G+++Y CS+ EE +
Sbjct: 355 WSKTLN---SIHKHAKLQGMILS-----------RAAELVRPGGLILYSVCSMEPEETDG 400
Query: 247 VIAWILHRHPEVELVQT-LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
VI L + + L + LP+ G + + ++Q M+ F P + D GFF
Sbjct: 401 VIKAFLRNNEDFTLEPSPLPKDGDQTM------LDEQGCMRTF-----PHRQGMD--GFF 447
Query: 306 ICKLRKK 312
++R++
Sbjct: 448 AARMRRR 454
>gi|42782957|ref|NP_980204.1| sun protein [Bacillus cereus ATCC 10987]
gi|42738884|gb|AAS42812.1| sun protein [Bacillus cereus ATCC 10987]
Length = 444
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 119/245 (48%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G VLD CAAPG K THIA + TG +++LD +V +++
Sbjct: 232 IQDESSMLVARALEPDEGDVVLDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQ 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
++L L +++T D+ ++ E+FD+IL+DAPCSGFG + +
Sbjct: 292 QAERLGLGNVETKALDARKVQEH---------FANETFDKILVDAPCSGFG--VIRRKPD 340
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 341 IKLGKDKGDSERLSTIQLAILEKI-----------APLLKQGGRLVYSTCTIEKIENEQV 389
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E T+ + + L+ E + Q + F T GF+I
Sbjct: 390 IERFLQEHPEFEWDTTIKERMPEKLSPYIDEGQVQILPHYFA-----------TDGFYIA 438
Query: 308 KLRKK 312
LRK+
Sbjct: 439 CLRKR 443
>gi|416406060|ref|ZP_11688032.1| Ribosomal RNA small subunit methyltransferase B [Crocosphaera
watsonii WH 0003]
gi|357261147|gb|EHJ10449.1| Ribosomal RNA small subunit methyltransferase B [Crocosphaera
watsonii WH 0003]
Length = 452
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 88/322 (27%), Positives = 145/322 (45%), Gaps = 58/322 (18%)
Query: 12 WLDRAGFVSVLRLPA--RQRPSLSIYCYALDILFRGVAVEITNV------LSQVP-NVAL 62
WL + G + ++ Q P++ I L + ++T+ L + P + L
Sbjct: 166 WLQKWGEETTEKMCHWFNQSPNIDIRVNPLKTNLETLQTQLTSAGVNVTPLGRFPCALRL 225
Query: 63 DSSMGILQNLPSILAGH-------------YLDVQPGQKVLDMCAAPGNKLTHIALLMND 109
+G + LP GH +LD QPG+ ++D CAAPG K THIA LM D
Sbjct: 226 KGKIGTIPTLPGFSQGHWTVQDTSAQLVSYFLDPQPGETIIDACAAPGGKTTHIAELMGD 285
Query: 110 TGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRI 169
GT+ A D++ R+ K++E ++L+L+ I+T V DS + Q I + DR+
Sbjct: 286 QGTIFACDRTPSRLKKVQENAQRLELNCIETVVGDSRYL----QQFINKG-------DRV 334
Query: 170 LLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKD 229
L+D PCSG G + + + I+ ++Q ++L ++V K
Sbjct: 335 LVDVPCSGLGTLHRHPDIR-WRQTPENIRELTSLQLEILNQAAQWV-----------KPQ 382
Query: 230 GILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFG 289
G LVY TC+L+ EN+ +I L H ++ P A Q +
Sbjct: 383 GTLVYSTCTLNPPENQEIIQTFLSTHSHWKIEPPNPH-----WAFSPFVTSSQWIQ---- 433
Query: 290 PPLIPTDRNTDTIGFFICKLRK 311
++P +++D GFF+ KL+K
Sbjct: 434 --MLPHKQDSD--GFFMVKLKK 451
>gi|189422|gb|AAA36398.1| proliferating cell nuclear protein P120, partial [Homo sapiens]
Length = 869
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 95/294 (32%), Positives = 137/294 (46%), Gaps = 52/294 (17%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+ V DSS+ I P LAGHY L Q
Sbjct: 339 AQALINRGVNLDPLGKWSKTGLVVYDSSVPIGAT-PEYLAGHYMLQGASSMLPVMALAPQ 397
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDMC APG K +++A LM +TG ++A D + R+ + + +L +++ YD
Sbjct: 398 EHERILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYD 457
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANI 203
+ FDR+LLDAPCSG G + + N D+K I A++
Sbjct: 458 GRQFPKVVG-----------GFDRVLLDAPCSGTGV--ISKDPAVKTNKDEKDILRCAHL 504
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
QK+LL + V+ G G LVYCTCS++VEENE V+ + L + V LV T
Sbjct: 505 QKELLLSAIDSVNATSKTG-------GYLVYCTCSITVEENEWVVDYALKKR-NVRLVPT 556
Query: 264 LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
G +G + +RF P L T R N D GFFI K +K
Sbjct: 557 GLDFGQEGFT--------RFRERRFHPSLRSTRRFYPHTHNMD--GFFIAKFKK 600
>gi|67924848|ref|ZP_00518244.1| Fmu, rRNA SAM-dependent methyltransferase [Crocosphaera watsonii WH
8501]
gi|67853307|gb|EAM48670.1| Fmu, rRNA SAM-dependent methyltransferase [Crocosphaera watsonii WH
8501]
Length = 452
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 88/322 (27%), Positives = 145/322 (45%), Gaps = 58/322 (18%)
Query: 12 WLDRAGFVSVLRLPA--RQRPSLSIYCYALDILFRGVAVEITNV------LSQVP-NVAL 62
WL + G + ++ Q P++ I L + ++T+ L + P + L
Sbjct: 166 WLQKWGEETTEKMCHWFNQSPNIDIRVNPLKTNLETLQTQLTSAGVNVTPLGRFPCALRL 225
Query: 63 DSSMGILQNLPSILAGH-------------YLDVQPGQKVLDMCAAPGNKLTHIALLMND 109
+G + LP GH +LD QPG+ ++D CAAPG K THIA LM D
Sbjct: 226 KGKIGTIPTLPGFSQGHWTVQDTSAQLVSYFLDPQPGETIIDACAAPGGKTTHIAELMGD 285
Query: 110 TGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRI 169
GT+ A D++ R+ K++E ++L+L+ I+T V DS + Q I + DR+
Sbjct: 286 QGTIFACDRTPSRLKKVQENAQRLELNCIETVVGDSRYL----QQFINKG-------DRV 334
Query: 170 LLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKD 229
L+D PCSG G + + + I+ ++Q ++L ++V K
Sbjct: 335 LVDVPCSGLGTLHRHPDIR-WRQTPENIRELTSLQLEILNQAAQWV-----------KPQ 382
Query: 230 GILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFG 289
G LVY TC+L+ EN+ +I L H ++ P A Q +
Sbjct: 383 GTLVYSTCTLNPPENQEIIQTFLSTHSHWKIEPPNPH-----WAFSPFVTSSQWIQ---- 433
Query: 290 PPLIPTDRNTDTIGFFICKLRK 311
++P +++D GFF+ KL+K
Sbjct: 434 --MLPHKQDSD--GFFMVKLKK 451
>gi|297583987|ref|YP_003699767.1| sun protein [Bacillus selenitireducens MLS10]
gi|297142444|gb|ADH99201.1| sun protein [Bacillus selenitireducens MLS10]
Length = 457
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 78/251 (31%), Positives = 122/251 (48%), Gaps = 44/251 (17%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S++ LD +PG +VLD CAAPG K +HIA MND G L A+D K ++ ++
Sbjct: 240 IQDEGSMMVTGLLDPKPGMRVLDSCAAPGGKTSHIAERMNDEGELYAMDIHKHKIKLIDA 299
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
++L LS + D+ + +L++ESFD IL+DAPCSG G ++P
Sbjct: 300 QAERLGLSVVHGLKGDAR---------LAGEQLEEESFDCILVDAPCSGLGVIQRKPDLK 350
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
S ++ I+ IQ ++L+ V+ PLLK G LVY TC++ EENE
Sbjct: 351 WTKS----ERDIERLTVIQGEILKQVW-----------PLLKPGGRLVYSTCTIDYEENE 395
Query: 246 AVIAWILHRHP----EVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDT 301
+ ++ E + + LP+ + + + G LIP TD
Sbjct: 396 GQVTHFVNETADADFEADFLNRLPE-----------PVQTSSFANQSGIQLIPGQYGTD- 443
Query: 302 IGFFICKLRKK 312
GFF+ + K+
Sbjct: 444 -GFFMTSIVKR 453
>gi|392576504|gb|EIW69635.1| hypothetical protein TREMEDRAFT_30413 [Tremella mesenterica DSM
1558]
Length = 678
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 139/287 (48%), Gaps = 51/287 (17%)
Query: 44 RGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQKVL 90
RGV +E S+V +S + + P LAGHY L QP +++L
Sbjct: 346 RGVVLEPIGKWSKVGLQVFESPVPVGAT-PEYLAGHYMLQSASSFLPVIALAPQPEERIL 404
Query: 91 DMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINT 150
DM +APG K T+I+ LM +TG + A D +K R L + +L ++ YD+
Sbjct: 405 DMASAPGGKTTYISALMQNTGIVFANDSNKQRTKSLTANVHRLGCKNVVVCNYDAR---- 460
Query: 151 SSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY---ANIQKKL 207
E K+ FDR+LLDAPCSG G + + + ++K + + A++QK+L
Sbjct: 461 ------EFPKVLG-GFDRVLLDAPCSGTG----VISKDQSVKVNKTERDFQLLAHLQKQL 509
Query: 208 LQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQL 267
L V+ P G +VY TCS++V+ENEAV+ + L + P +LV T +
Sbjct: 510 LLCALDSVN-------PNSTTGGYVVYSTCSVTVDENEAVVDYALRKRPHCKLVDTGLEF 562
Query: 268 GMKGLAHKDLEA----EDQAVMQRFGPPLIPTDRNTDTIGFFICKLR 310
G++G K E ++ ++ +R+ P N D GFF+ K +
Sbjct: 563 GVEGF--KAFEGKTFHDNLSLTRRY----YPHKHNMD--GFFVAKFK 601
>gi|152976231|ref|YP_001375748.1| sun protein [Bacillus cytotoxicus NVH 391-98]
gi|152024983|gb|ABS22753.1| sun protein [Bacillus cytotoxicus NVH 391-98]
Length = 444
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 76/247 (30%), Positives = 121/247 (48%), Gaps = 38/247 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L ++ G +LD CAAPG K TH+A + TG +++LD +V +++
Sbjct: 232 IQDESSMLVARAVEPSKGDMILDSCAAPGGKTTHMAERLRGTGKVMSLDLHDHKVRLIKQ 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
+L L +++T D+ ++ Q ESFD+IL+DAPCSGFG ++P
Sbjct: 292 QANRLGLENVETKALDARKVQEH---------FQNESFDKILVDAPCSGFGVIRRKPDIK 342
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ ++ + IQ+ +L V PLLK G LVY TC++ ENE
Sbjct: 343 LGKEKGDSER----LSTIQQTILDKV-----------APLLKTGGRLVYSTCTIEKIENE 387
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
V+A L +HPE E T+ + + L + + + ++P TD GF+
Sbjct: 388 QVVANFLQKHPEFEWDTTMQERMPEKL---------RPYINKGQVQILPHYFATD--GFY 436
Query: 306 ICKLRKK 312
I LRKK
Sbjct: 437 IACLRKK 443
>gi|287723|emb|CAA39119.1| P120 antigen [Homo sapiens]
Length = 855
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 95/294 (32%), Positives = 137/294 (46%), Gaps = 52/294 (17%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+ V DSS+ I P LAGHY L Q
Sbjct: 325 AQALINRGVNLDPLGKWSKTGLVVYDSSVPIGAT-PEYLAGHYMLQGASSMLPVMALAPQ 383
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDMC APG K +++A LM +TG ++A D + R+ + + +L +++ YD
Sbjct: 384 EHERILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYD 443
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANI 203
+ FDR+LLDAPCSG G + + N D+K I A++
Sbjct: 444 GRQFPKVVG-----------GFDRVLLDAPCSGTGV--ISKDPAVKTNKDEKDILRCAHL 490
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
QK+LL + V+ G G LVYCTCS++VEENE V+ + L + V LV T
Sbjct: 491 QKELLLSAIDSVNATSKTG-------GYLVYCTCSITVEENEWVVDYALKKR-NVRLVPT 542
Query: 264 LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
G +G + +RF P L T R N D GFFI K +K
Sbjct: 543 GLDFGQEGFT--------RFRERRFHPSLRSTRRFYPHTHNMD--GFFIAKFKK 586
>gi|417404787|gb|JAA49130.1| Putative trna and rrna cytosine-c5-methylase nucleolar protein
nol1/nop2 [Desmodus rotundus]
Length = 814
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 97/308 (31%), Positives = 138/308 (44%), Gaps = 56/308 (18%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+ V DSS+ I P LAGHY L Q
Sbjct: 327 AQALINRGVNLDPLGKWSKTGLVVYDSSVPIGAT-PEYLAGHYMLQGASSMLPVMALAPQ 385
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDMC APG K ++IA LM +TG ++A D S R+ + + +L +++ YD
Sbjct: 386 EHERILDMCCAPGGKTSYIAQLMKNTGVILANDASAERLKSVVGNLHRLGVTNTIISHYD 445
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY---A 201
+ FDR+LLDAPCSG G + + + +K K A
Sbjct: 446 GRQFPKVIG-----------GFDRVLLDAPCSGTG----IISKDPAVKTNKDEKDVLRCA 490
Query: 202 NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
++QK+LL + V+ G G LVYCTCS+ VEENE V+ + L + V LV
Sbjct: 491 HLQKELLLSAIDSVNATSKTG-------GYLVYCTCSIMVEENEWVVDYALKKR-NVRLV 542
Query: 262 QTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRKKYGE 315
T G +G + +RF P L T R N D GFFI K +K
Sbjct: 543 PTGLDFGQEGFT--------RFRERRFHPTLRSTRRFYPHTHNMD--GFFIAKFKKFSNS 592
Query: 316 APEIYIHP 323
P+ P
Sbjct: 593 IPQSQAAP 600
>gi|406882171|gb|EKD30032.1| hypothetical protein ACD_78C00178G0001, partial [uncultured
bacterium (gcode 4)]
Length = 301
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 84/252 (33%), Positives = 132/252 (52%), Gaps = 36/252 (14%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q L S L LD++ +V D+ AAP +K T IA LM +TG ++A +K + R KL
Sbjct: 79 VQWLASQLPATLLDLEKNMQVFDVTAAPWSKTTQIAALMGNTGKIVACEKHQIRHDKLLH 138
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQ-RPMFYNA 187
+ ++++T D+ ++ +L++ SFD ILLD PCS G+ R +
Sbjct: 139 NLALQGATNVETFKMDALKLCE---------ELEQGSFDAILLDVPCSAEGRIRANDERS 189
Query: 188 NSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
F ++ + I+ A +QK LL AV +PLLKK G+LVY TC+L+ EENE V
Sbjct: 190 YGFWSV-RNIEEKAILQKSLLDAV-----------LPLLKKGGVLVYSTCTLAPEENEGV 237
Query: 248 IAWILHR--HPEVELVQTLPQL-GMKGLAHKDLEAEDQAVMQRFGPPLIPTDR---NTDT 301
I+ IL++ H +E ++ L + M GL+ D + P + T R + +
Sbjct: 238 ISEILNKNLHLSLEKIEGLEGVSAMSGLS--DFNG------TTYHPDISSTIRILPSAEM 289
Query: 302 IGFFICKLRKKY 313
GF+I K+RK +
Sbjct: 290 EGFYIAKIRKNF 301
>gi|403303158|ref|XP_003942211.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 [Saimiri
boliviensis boliviensis]
Length = 812
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 137/294 (46%), Gaps = 52/294 (17%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+ V DSS+ I P LAGHY L Q
Sbjct: 325 AQALINRGVNLDPLGKWSKTGLVVYDSSVPIGAT-PEYLAGHYMLQGASSMLPVMALAPQ 383
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDMC+APG K ++IA LM +TG ++A D + R+ + + +L +++ YD
Sbjct: 384 EHERILDMCSAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTVISHYD 443
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANI 203
+ FDR+LLDAPCSG G + + N D+K I A++
Sbjct: 444 GRQFPKVVG-----------GFDRVLLDAPCSGTGV--ISKDPAVKTNKDEKDILRCAHL 490
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
QK+LL + V+ G G LVYCTCS+ VEENE V+ + L + V LV T
Sbjct: 491 QKELLLSAIDSVNATSKTG-------GYLVYCTCSVMVEENEWVVDYALKKR-NVRLVPT 542
Query: 264 LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
G +G + +RF P L T R N D GFFI K +K
Sbjct: 543 GLDFGQEGFT--------RFRERRFHPSLRSTRRFYPHTHNMD--GFFIAKFKK 586
>gi|444320603|ref|XP_004180958.1| hypothetical protein TBLA_0E03850 [Tetrapisispora blattae CBS 6284]
gi|387514001|emb|CCH61439.1| hypothetical protein TBLA_0E03850 [Tetrapisispora blattae CBS 6284]
Length = 632
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 88/290 (30%), Positives = 131/290 (45%), Gaps = 49/290 (16%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV ++ ++V DS + I P LAG+Y LD Q +
Sbjct: 303 LVNRGVNLQPIGAWTKVGLQIFDSQVPIGAT-PEYLAGNYILQAASSFLPVIALDPQENE 361
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM +APG K T+I+ LM +TG + A D +K R L I +L ++ YD+
Sbjct: 362 RVLDMASAPGGKTTYISALMKNTGCIFANDANKARTKSLIANIHRLGCTNTIVCNYDARE 421
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKL 207
FDRILLDAPCSG G + + + + K + I
Sbjct: 422 FPKVIG-----------GFDRILLDAPCSGTG----VIGKDQSVKVSRTEKDFIQIPHLQ 466
Query: 208 LQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQL 267
Q + + D K G+LVY TCS++VEE+EAV+ + L + P V+LV+T +
Sbjct: 467 KQLILSAIDSLDSNS----KNGGVLVYSTCSVAVEEDEAVVDYALRKRPNVKLVETGLAI 522
Query: 268 GMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
G +G ++F P + T R N D GFF+ K +K
Sbjct: 523 GKEGFTS--------YRGKKFHPSVKLTRRYYPHTYNVD--GFFVAKFQK 562
>gi|162420599|ref|YP_001605204.1| 16S rRNA methyltransferase B [Yersinia pestis Angola]
gi|162353414|gb|ABX87362.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
Angola]
Length = 435
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 102/186 (54%), Gaps = 29/186 (15%)
Query: 81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQT 140
LD Q G+++LD+CAAPG K THI L ++A+D + R+++++E +++LQL ++
Sbjct: 248 LDPQNGEQILDLCAAPGGKTTHI-LEAAPKAHVLAVDIDEQRLSRVKENLQRLQLQAV-V 305
Query: 141 HVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKI 197
V D +T + FDRILLDAPCS G + P +L D+ I
Sbjct: 306 RVGDGRAPDTWCG---------DQQFDRILLDAPCSATGVIRRHPDI----KWLRRDRDI 352
Query: 198 KSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPE 257
A +Q ++++A++ P LK G+LVY TCS+ EEN+ IA L RHPE
Sbjct: 353 SELAQLQSEIIEAIW-----------PKLKHGGVLVYATCSILPEENQQQIAAFLQRHPE 401
Query: 258 VELVQT 263
+L +T
Sbjct: 402 AQLTET 407
>gi|167521191|ref|XP_001744934.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776548|gb|EDQ90167.1| predicted protein [Monosiga brevicollis MX1]
Length = 585
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 98/304 (32%), Positives = 137/304 (45%), Gaps = 58/304 (19%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQ------------- 84
A ++ RGV+++ S+V V +SS+ I P LAGHYL VQ
Sbjct: 193 AQALINRGVSLDPVGKWSKVGLVIFESSVPIGAT-PEYLAGHYL-VQSASSFLPVMALSP 250
Query: 85 -PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVY 143
P +KVLDM AAPG K TH+A +M +TG ++ D +K R L I +L ++ Y
Sbjct: 251 LPNEKVLDMAAAPGGKTTHMAAMMKNTGMVVVNDFNKARTKSLFGNIHRLGCTNTVICNY 310
Query: 144 DSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSY 200
D FDR+LLDAPCSG G + P N S +
Sbjct: 311 DGREFPKVLG-----------GFDRVLLDAPCSGSGVIAKDPGAKNNKS----EDDFMRC 355
Query: 201 ANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVEL 260
+ +QK+L+ + V G G +VY TCS+ V+ENE+V+ + L R V+L
Sbjct: 356 STLQKELILSAIDSVDANSKTG-------GFIVYSTCSIMVDENESVVDYAL-RKRNVKL 407
Query: 261 VQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRKKYG 314
V T G G + +RF P L T R N D GF++ KL+K
Sbjct: 408 VDTGLDFGRPGFTN--------FRGKRFHPTLEKTRRYYPHAHNMD--GFYVAKLQKLSN 457
Query: 315 EAPE 318
E P+
Sbjct: 458 EIPK 461
>gi|224493303|sp|A9R925.2|RSMB_YERPG RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
Length = 429
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 102/186 (54%), Gaps = 29/186 (15%)
Query: 81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQT 140
LD Q G+++LD+CAAPG K THI L ++A+D + R+++++E +++LQL ++
Sbjct: 242 LDPQNGEQILDLCAAPGGKTTHI-LEAAPKAHVLAVDIDEQRLSRVKENLQRLQLQAV-V 299
Query: 141 HVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKI 197
V D +T + FDRILLDAPCS G + P +L D+ I
Sbjct: 300 RVGDGRAPDTWCG---------DQQFDRILLDAPCSATGVIRRHPDI----KWLRRDRDI 346
Query: 198 KSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPE 257
A +Q ++++A++ P LK G+LVY TCS+ EEN+ IA L RHPE
Sbjct: 347 SELAQLQSEIIEAIW-----------PKLKHGGVLVYATCSILPEENQQQIAAFLQRHPE 395
Query: 258 VELVQT 263
+L +T
Sbjct: 396 AQLTET 401
>gi|227529123|ref|ZP_03959172.1| tRNA/rRNA methyltransferase [Lactobacillus vaginalis ATCC 49540]
gi|227350967|gb|EEJ41258.1| tRNA/rRNA methyltransferase [Lactobacillus vaginalis ATCC 49540]
Length = 455
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 110/222 (49%), Gaps = 26/222 (11%)
Query: 51 TNVLSQVPNVALDSSMGIL--QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMN 108
T QV +LD G + Q ++ G +D QPG++VLD+CAAPG K TH+ LM
Sbjct: 60 TGYYGQVNGKSLDHVTGWVYSQEPSAMYVGEVVDPQPGERVLDLCAAPGGKSTHLISLMK 119
Query: 109 DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ-KESFD 167
D G L+A + + R L E +++ TR + E+++ Q + FD
Sbjct: 120 DQGLLVANEIFRKRALILAENLERW-----------GTRNTVVTNESPEKLEKQFPKFFD 168
Query: 168 RILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLK 227
RIL+DAPCSG G + N D + AN Q+K++ + I +LK
Sbjct: 169 RILIDAPCSGEGMFRKEPAGIEYWNTDYPAEC-ANRQQKIIASA-----------IKMLK 216
Query: 228 KDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGM 269
GILVY TC+ + EE+E +WIL + E+++ + GM
Sbjct: 217 PGGILVYSTCTFAPEEDEQNASWILKNYSEMQMEEVKAYPGM 258
>gi|432111851|gb|ELK34893.1| Putative ribosomal RNA methyltransferase NOP2 [Myotis davidii]
Length = 825
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 98/306 (32%), Positives = 139/306 (45%), Gaps = 52/306 (16%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+ V DSS+ I P LAGHY L Q
Sbjct: 334 AQALINRGVNLDPLGKWSKTGLVVYDSSVPIGAT-PEYLAGHYMLQGASSMLPVMALAPQ 392
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDMC APG K ++IA LM +TG ++A D + R+ + + +L +++ YD
Sbjct: 393 EHERILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYD 452
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANI 203
+ FDR+LLDAPCSG G + + N D+K I A++
Sbjct: 453 GRQFPKVVG-----------GFDRVLLDAPCSGTGV--ISKDPAVKTNKDEKDILRCAHL 499
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
QK+LL + V+ G G LVYCTCS+ VEENE V+ + L + V LV T
Sbjct: 500 QKELLLSAIDSVNATSKTG-------GYLVYCTCSIMVEENEWVVDYALKKR-NVRLVPT 551
Query: 264 LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRKKYGEAP 317
G +G + +RF P L T R N D GFFI K +K P
Sbjct: 552 GLDFGQEGFT--------RFRERRFHPTLRSTRRFYPHTHNMD--GFFIAKFKKFSNSIP 601
Query: 318 EIYIHP 323
+ P
Sbjct: 602 QSQTAP 607
>gi|301773766|ref|XP_002922311.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
[Ailuropoda melanoleuca]
Length = 820
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 136/294 (46%), Gaps = 52/294 (17%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+ V DSS+ I P LAGHY L Q
Sbjct: 328 AQALINRGVNLDPLGKWSKTGLVVYDSSVPIGAT-PEYLAGHYMLQGASSMLPVMALAPQ 386
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDMC APG K ++IA LM +TG ++A D + R+ + + +L +++ YD
Sbjct: 387 EHERILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYD 446
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANI 203
+ FDR+LLDAPCSG G + + N D+K I A++
Sbjct: 447 GRQFPKVVG-----------GFDRVLLDAPCSGTGV--ISKDPAVKTNKDEKDILRCAHL 493
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
QK+LL + V+ G G LVYCTCS+ VEENE V+ + L + V LV T
Sbjct: 494 QKELLLSAIDSVNAMSKTG-------GYLVYCTCSIMVEENEWVVDYALKKR-NVRLVPT 545
Query: 264 LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
G +G + +RF P L T R N D GFFI K +K
Sbjct: 546 GLDFGQEGFT--------RFRERRFHPTLRSTRRFYPHTHNMD--GFFIAKFKK 589
>gi|165936548|ref|ZP_02225116.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Orientalis str. IP275]
gi|166213307|ref|ZP_02239342.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Antiqua str. B42003004]
gi|167399475|ref|ZP_02304999.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Antiqua str. UG05-0454]
gi|167419402|ref|ZP_02311155.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Orientalis str. MG05-1020]
gi|167425618|ref|ZP_02317371.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Mediaevalis str. K1973002]
gi|270488262|ref|ZP_06205336.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
KIM D27]
gi|294502314|ref|YP_003566376.1| hypothetical protein YPZ3_0204 [Yersinia pestis Z176003]
gi|384120798|ref|YP_005503418.1| hypothetical protein YPD4_0206 [Yersinia pestis D106004]
gi|384124680|ref|YP_005507294.1| hypothetical protein YPD8_0211 [Yersinia pestis D182038]
gi|165915664|gb|EDR34273.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Orientalis str. IP275]
gi|166205605|gb|EDR50085.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Antiqua str. B42003004]
gi|166963396|gb|EDR59417.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Orientalis str. MG05-1020]
gi|167051979|gb|EDR63387.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Antiqua str. UG05-0454]
gi|167055308|gb|EDR65102.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Mediaevalis str. K1973002]
gi|262360394|gb|ACY57115.1| hypothetical protein YPD4_0206 [Yersinia pestis D106004]
gi|262364344|gb|ACY60901.1| hypothetical protein YPD8_0211 [Yersinia pestis D182038]
gi|270336766|gb|EFA47543.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
KIM D27]
gi|294352773|gb|ADE63114.1| hypothetical protein YPZ3_0204 [Yersinia pestis Z176003]
Length = 431
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 102/186 (54%), Gaps = 29/186 (15%)
Query: 81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQT 140
LD Q G+++LD+CAAPG K THI L ++A+D + R+++++E +++LQL ++
Sbjct: 244 LDPQNGEQILDLCAAPGGKTTHI-LEAAPKAHVLAVDIDEQRLSRVKENLQRLQLQAV-V 301
Query: 141 HVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKI 197
V D +T + FDRILLDAPCS G + P +L D+ I
Sbjct: 302 RVGDGRAPDTWCG---------DQQFDRILLDAPCSATGVIRRHPDI----KWLRRDRDI 348
Query: 198 KSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPE 257
A +Q ++++A++ P LK G+LVY TCS+ EEN+ IA L RHPE
Sbjct: 349 SELAQLQSEIIEAIW-----------PKLKHGGVLVYATCSILPEENQQQIAAFLQRHPE 397
Query: 258 VELVQT 263
+L +T
Sbjct: 398 AQLTET 403
>gi|45434953|gb|AAS60514.1| tRNA and rRNA cytosine-C5-methylases [Yersinia pestis biovar
Microtus str. 91001]
Length = 435
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 102/186 (54%), Gaps = 29/186 (15%)
Query: 81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQT 140
LD Q G+++LD+CAAPG K THI L ++A+D + R+++++E +++LQL ++
Sbjct: 248 LDPQNGEQILDLCAAPGGKTTHI-LEAAPKAHVLAVDIDEQRLSRVKENLQRLQLQAV-V 305
Query: 141 HVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKI 197
V D +T + FDRILLDAPCS G + P +L D+ I
Sbjct: 306 RVGDGRAPDTWCG---------DQQFDRILLDAPCSATGVIRRHPDI----KWLRRDRDI 352
Query: 198 KSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPE 257
A +Q ++++A++ P LK G+LVY TCS+ EEN+ IA L RHPE
Sbjct: 353 SELAQLQSEIIEAIW-----------PKLKHGGVLVYATCSILPEENQQQIAAFLQRHPE 401
Query: 258 VELVQT 263
+L +T
Sbjct: 402 AQLTET 407
>gi|339253414|ref|XP_003371930.1| putative RNA methyltransferase NOL1 [Trichinella spiralis]
gi|316967738|gb|EFV52125.1| putative RNA methyltransferase NOL1 [Trichinella spiralis]
Length = 472
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 93/272 (34%), Positives = 126/272 (46%), Gaps = 41/272 (15%)
Query: 55 SQVPNVALDSSMG---ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTG 111
SQVP A M ILQ S + LD Q +K+LD+CAAPG K ++I+ +M +TG
Sbjct: 205 SQVPIGATPEYMCGFYILQGASSFMPVLALDPQEDEKILDLCAAPGGKSSYISAMMKNTG 264
Query: 112 TLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILL 171
LIA D S+ R + +L + + D ++ FDR+LL
Sbjct: 265 ILIANDVSRDRCKAITSNFHRLGVRNAMVTCLDGRH-------------FKQILFDRVLL 311
Query: 172 DAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGI 231
DAPCSG G + NL I+ A +QK+L+ A + D + K I
Sbjct: 312 DAPCSGSGVISKDVSVKVSKNL-LDIQRCATLQKELILAA---IDRLDARS----PKGSI 363
Query: 232 LVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPP 291
LVY TCS+ VEENEAVI + L R V+LV T G++G + RF P
Sbjct: 364 LVYSTCSIFVEENEAVIDYAL-RKRNVKLVDTGLPFGIEGFV--------RFREYRFHPT 414
Query: 292 L------IPTDRNTDTIGFFICKLRKKYGEAP 317
+ P N D GFF+ KL+K E P
Sbjct: 415 MKYCRRFYPHKHNMD--GFFVAKLKKFSNEVP 444
>gi|134025020|gb|AAI35007.1| Si:dkey-91i17.1 protein [Danio rerio]
Length = 676
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 95/293 (32%), Positives = 134/293 (45%), Gaps = 56/293 (19%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV ++ S+V V DSS+ I P LAGHY L Q G+
Sbjct: 326 LINRGVNLDPLGKWSKVGLVIYDSSVPIGAT-PEYLAGHYMLQGASSFLPVMALSPQEGE 384
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
VLDM AAPG K T++A LM +TG ++A D + R+ + I +L +++ YD +
Sbjct: 385 SVLDMSAAPGGKTTYMAQLMRNTGMIVANDANVDRLKSVVGNIHRLGVTNAVICNYDGRQ 444
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYANIQ 204
FDR+LLDAPCSG G + P + I A++Q
Sbjct: 445 FPKVMG-----------GFDRVLLDAPCSGTGVISKDPAVKTGKD----EADILRSAHLQ 489
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL 264
K+L+ + V+ G G LVYCTCS+ VEENE V+ + L + V+LV T
Sbjct: 490 KELILSAIDSVNADSQTG-------GYLVYCTCSIMVEENEWVVDYALKKR-NVKLVPTG 541
Query: 265 PQLGMKGLAHKDLEAEDQAVMQRFGPPL------IPTDRNTDTIGFFICKLRK 311
G +G + +RF P L P N D GFF+ KL+K
Sbjct: 542 LDFGKEGFT--------RFKEKRFHPSLKLSRRFYPHSHNMD--GFFVAKLKK 584
>gi|22127891|ref|NP_671314.1| 16S rRNA methyltransferase GidB [Yersinia pestis KIM10+]
gi|51597957|ref|YP_072148.1| 16S rRNA methyltransferase GidB [Yersinia pseudotuberculosis IP
32953]
gi|108809224|ref|YP_653140.1| 16S rRNA methyltransferase B [Yersinia pestis Antiqua]
gi|108813989|ref|YP_649756.1| 16S rRNA methyltransferase B [Yersinia pestis Nepal516]
gi|145597481|ref|YP_001161556.1| 16S rRNA methyltransferase B [Yersinia pestis Pestoides F]
gi|150260712|ref|ZP_01917440.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis CA88-4125]
gi|153947745|ref|YP_001402832.1| 16S rRNA methyltransferase B [Yersinia pseudotuberculosis IP 31758]
gi|161511468|ref|NP_991637.2| 16S rRNA methyltransferase GidB [Yersinia pestis biovar Microtus
str. 91001]
gi|165927896|ref|ZP_02223728.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Orientalis str. F1991016]
gi|166010534|ref|ZP_02231432.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Antiqua str. E1979001]
gi|167468244|ref|ZP_02332948.1| 16S rRNA methyltransferase B [Yersinia pestis FV-1]
gi|170022575|ref|YP_001719080.1| 16S rRNA methyltransferase B [Yersinia pseudotuberculosis YPIII]
gi|186897153|ref|YP_001874265.1| 16S rRNA methyltransferase B [Yersinia pseudotuberculosis PB1/+]
gi|218927446|ref|YP_002345321.1| 16S rRNA methyltransferase GidB [Yersinia pestis CO92]
gi|229836278|ref|ZP_04456445.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis Pestoides A]
gi|229840098|ref|ZP_04460257.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229842180|ref|ZP_04462335.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis biovar
Orientalis str. India 195]
gi|229904520|ref|ZP_04519631.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis Nepal516]
gi|384137783|ref|YP_005520485.1| 16S rRNA methyltransferase B [Yersinia pestis A1122]
gi|384412869|ref|YP_005622231.1| 16S rRNA methyltransferase B [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|420544668|ref|ZP_15042874.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-01]
gi|420549966|ref|ZP_15047612.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-02]
gi|420555423|ref|ZP_15052467.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-03]
gi|420561069|ref|ZP_15057380.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-04]
gi|420566104|ref|ZP_15061921.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-05]
gi|420571725|ref|ZP_15067026.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-06]
gi|420577062|ref|ZP_15071849.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-07]
gi|420582425|ref|ZP_15076736.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-08]
gi|420587556|ref|ZP_15081374.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-09]
gi|420592870|ref|ZP_15086154.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-10]
gi|420598558|ref|ZP_15091254.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-11]
gi|420604095|ref|ZP_15096181.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-12]
gi|420609431|ref|ZP_15101031.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-13]
gi|420614675|ref|ZP_15105710.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-14]
gi|420620109|ref|ZP_15110441.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-15]
gi|420625176|ref|ZP_15115030.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-16]
gi|420630337|ref|ZP_15119720.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-19]
gi|420635467|ref|ZP_15124306.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-25]
gi|420641087|ref|ZP_15129371.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-29]
gi|420646224|ref|ZP_15134086.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-32]
gi|420651870|ref|ZP_15139142.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-34]
gi|420657290|ref|ZP_15144036.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-36]
gi|420662645|ref|ZP_15148813.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-42]
gi|420667636|ref|ZP_15153323.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-45]
gi|420672962|ref|ZP_15158167.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-46]
gi|420678457|ref|ZP_15163170.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-47]
gi|420683687|ref|ZP_15167872.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-48]
gi|420688852|ref|ZP_15172463.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-52]
gi|420694629|ref|ZP_15177518.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-53]
gi|420699899|ref|ZP_15182139.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-54]
gi|420706071|ref|ZP_15187007.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-55]
gi|420711362|ref|ZP_15191815.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-56]
gi|420716724|ref|ZP_15196573.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-58]
gi|420722375|ref|ZP_15201380.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-59]
gi|420728003|ref|ZP_15206376.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-60]
gi|420733127|ref|ZP_15210991.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-61]
gi|420738589|ref|ZP_15215927.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-63]
gi|420743830|ref|ZP_15220623.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-64]
gi|420749713|ref|ZP_15225556.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-65]
gi|420754755|ref|ZP_15230087.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-66]
gi|420760885|ref|ZP_15234944.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-71]
gi|420766044|ref|ZP_15239617.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-72]
gi|420771080|ref|ZP_15244122.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-76]
gi|420776425|ref|ZP_15248948.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-88]
gi|420781883|ref|ZP_15253739.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-89]
gi|420787340|ref|ZP_15258516.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-90]
gi|420792784|ref|ZP_15263423.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-91]
gi|420797914|ref|ZP_15268028.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-92]
gi|420803308|ref|ZP_15272884.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-93]
gi|420808486|ref|ZP_15277574.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-94]
gi|420814279|ref|ZP_15282752.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-95]
gi|420819406|ref|ZP_15287411.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-96]
gi|420824501|ref|ZP_15291961.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-98]
gi|420830323|ref|ZP_15297222.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-99]
gi|420835134|ref|ZP_15301557.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-100]
gi|420840260|ref|ZP_15306201.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-101]
gi|420845873|ref|ZP_15311283.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-102]
gi|420851196|ref|ZP_15316045.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-103]
gi|420856800|ref|ZP_15320755.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-113]
gi|421761664|ref|ZP_16198464.1| 16S rRNA methyltransferase B [Yersinia pestis INS]
gi|46396984|sp|Q8ZJ81.1|RSMB_YERPE RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|81638254|sp|Q664V2.1|RSMB_YERPS RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|122979388|sp|Q1C2X7.1|RSMB_YERPA RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|122979880|sp|Q1CCX4.1|RSMB_YERPN RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|224493292|sp|A7FNK4.1|RSMB_YERP3 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|224493293|sp|B2K506.1|RSMB_YERPB RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|224493294|sp|A4TH21.1|RSMB_YERPP RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|224493295|sp|B1JJH6.1|RSMB_YERPY RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|21961028|gb|AAM87565.1|AE014004_3 hypothetical protein y4021 [Yersinia pestis KIM10+]
gi|51591239|emb|CAH22905.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
32953]
gi|108777637|gb|ABG20156.1| hypothetical protein YPN_3829 [Yersinia pestis Nepal516]
gi|108781137|gb|ABG15195.1| hypothetical protein YPA_3233 [Yersinia pestis Antiqua]
gi|115346057|emb|CAL18923.1| conserved hypothetical protein [Yersinia pestis CO92]
gi|145209177|gb|ABP38584.1| hypothetical protein YPDSF_0162 [Yersinia pestis Pestoides F]
gi|149290120|gb|EDM40197.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis CA88-4125]
gi|152959240|gb|ABS46701.1| ribosomal RNA small subunit methyltransferase B [Yersinia
pseudotuberculosis IP 31758]
gi|165920172|gb|EDR37473.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Orientalis str. F1991016]
gi|165990624|gb|EDR42925.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Antiqua str. E1979001]
gi|169749109|gb|ACA66627.1| sun protein [Yersinia pseudotuberculosis YPIII]
gi|186700179|gb|ACC90808.1| sun protein [Yersinia pseudotuberculosis PB1/+]
gi|229678638|gb|EEO74743.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis Nepal516]
gi|229690490|gb|EEO82544.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis biovar
Orientalis str. India 195]
gi|229696464|gb|EEO86511.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229706346|gb|EEO92353.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis Pestoides A]
gi|320013373|gb|ADV96944.1| 16S rRNA methyltransferase B [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|342852912|gb|AEL71465.1| 16S rRNA methyltransferase B [Yersinia pestis A1122]
gi|391433129|gb|EIQ94498.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-01]
gi|391434056|gb|EIQ95300.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-02]
gi|391436791|gb|EIQ97716.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-03]
gi|391449124|gb|EIR08873.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-04]
gi|391449705|gb|EIR09403.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-05]
gi|391451930|gb|EIR11386.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-06]
gi|391465073|gb|EIR23296.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-07]
gi|391466641|gb|EIR24697.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-08]
gi|391468789|gb|EIR26631.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-09]
gi|391482538|gb|EIR38980.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-10]
gi|391483086|gb|EIR39481.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-12]
gi|391483447|gb|EIR39806.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-11]
gi|391497329|gb|EIR52199.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-13]
gi|391498333|gb|EIR53114.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-15]
gi|391501871|gb|EIR56231.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-14]
gi|391512937|gb|EIR66209.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-16]
gi|391514595|gb|EIR67687.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-19]
gi|391516192|gb|EIR69109.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-25]
gi|391528546|gb|EIR80351.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-29]
gi|391531485|gb|EIR82977.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-34]
gi|391532642|gb|EIR84003.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-32]
gi|391545647|gb|EIR95713.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-36]
gi|391547340|gb|EIR97244.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-42]
gi|391548058|gb|EIR97894.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-45]
gi|391561705|gb|EIS10211.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-46]
gi|391562825|gb|EIS11203.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-47]
gi|391564902|gb|EIS13062.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-48]
gi|391577032|gb|EIS23505.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-52]
gi|391577905|gb|EIS24246.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-53]
gi|391589064|gb|EIS34005.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-55]
gi|391592618|gb|EIS37014.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-54]
gi|391593183|gb|EIS37515.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-56]
gi|391606017|gb|EIS48799.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-60]
gi|391608007|gb|EIS50545.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-58]
gi|391608700|gb|EIS51165.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-59]
gi|391620658|gb|EIS61791.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-61]
gi|391621568|gb|EIS62596.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-63]
gi|391629940|gb|EIS69782.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-64]
gi|391632105|gb|EIS71670.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-65]
gi|391643391|gb|EIS81568.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-71]
gi|391646143|gb|EIS83934.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-72]
gi|391649499|gb|EIS86880.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-66]
gi|391655941|gb|EIS92624.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-76]
gi|391662855|gb|EIS98753.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-88]
gi|391667903|gb|EIT03182.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-89]
gi|391669457|gb|EIT04587.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-90]
gi|391673084|gb|EIT07839.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-91]
gi|391687122|gb|EIT20468.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-93]
gi|391688708|gb|EIT21903.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-92]
gi|391690002|gb|EIT23078.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-94]
gi|391701249|gb|EIT33273.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-95]
gi|391704389|gb|EIT36051.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-96]
gi|391705044|gb|EIT36644.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-98]
gi|391715923|gb|EIT46422.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-99]
gi|391720697|gb|EIT50697.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-100]
gi|391721254|gb|EIT51208.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-101]
gi|391731700|gb|EIT60369.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-102]
gi|391734364|gb|EIT62627.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-103]
gi|391737532|gb|EIT65409.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-113]
gi|411177986|gb|EKS47998.1| 16S rRNA methyltransferase B [Yersinia pestis INS]
Length = 429
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 102/186 (54%), Gaps = 29/186 (15%)
Query: 81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQT 140
LD Q G+++LD+CAAPG K THI L ++A+D + R+++++E +++LQL ++
Sbjct: 242 LDPQNGEQILDLCAAPGGKTTHI-LEAAPKAHVLAVDIDEQRLSRVKENLQRLQLQAV-V 299
Query: 141 HVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKI 197
V D +T + FDRILLDAPCS G + P +L D+ I
Sbjct: 300 RVGDGRAPDTWCG---------DQQFDRILLDAPCSATGVIRRHPDI----KWLRRDRDI 346
Query: 198 KSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPE 257
A +Q ++++A++ P LK G+LVY TCS+ EEN+ IA L RHPE
Sbjct: 347 SELAQLQSEIIEAIW-----------PKLKHGGVLVYATCSILPEENQQQIAAFLQRHPE 395
Query: 258 VELVQT 263
+L +T
Sbjct: 396 AQLTET 401
>gi|373124969|ref|ZP_09538807.1| NOL1/NOP2/sun family putative RNA methylase [Erysipelotrichaceae
bacterium 21_3]
gi|371658190|gb|EHO23472.1| NOL1/NOP2/sun family putative RNA methylase [Erysipelotrichaceae
bacterium 21_3]
Length = 442
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 85/258 (32%), Positives = 122/258 (47%), Gaps = 49/258 (18%)
Query: 69 LQNLPSILAGHY-------------LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIA 115
L N P+ LAG + LDVQ VLDMCAAPG K T IA + D G L++
Sbjct: 71 LGNHPAHLAGLFYMQEPSAASAVEVLDVQRNDWVLDMCAAPGGKSTQIAAKLQDRGFLVS 130
Query: 116 LDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPC 175
+ R L +++L S NT Q + M FDR+L+DAPC
Sbjct: 131 NEIESRRAQILLSNMERLGFSRCMI-------TNTRPQQIAKEMS---GWFDRVLVDAPC 180
Query: 176 SGFGQRPMFYNANSFLN--LDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILV 233
SG G MF + ++ ++ + + A Q +L + Y LK+DG LV
Sbjct: 181 SGEG---MFKKHSKAMDDWSEEHVLACAQRQLHILDSAY-----------AALKEDGTLV 226
Query: 234 YCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLI 293
Y TC+ S+EENE V+ + +HP++ELV G +GL + DL+ E ++R +
Sbjct: 227 YSTCTYSMEENEQVVYAFMKQHPDMELVDCGVTFGRRGLPYLDLDTEK---LRR----IF 279
Query: 294 PTDRNTDTIGFFICKLRK 311
P D+ G F+ K RK
Sbjct: 280 PMDQGE---GHFVAKFRK 294
>gi|297690949|ref|XP_002822861.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 isoform 2
[Pongo abelii]
Length = 814
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 95/294 (32%), Positives = 137/294 (46%), Gaps = 52/294 (17%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+ V DSS+ I P LAGHY L Q
Sbjct: 327 AQALINRGVNLDPLGKWSKTGLVVYDSSVPIGAT-PEYLAGHYILQGASSMLPVMALAPQ 385
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDMC APG K +++A LM +TG ++A D + R+ + + +L +++ YD
Sbjct: 386 EHERILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTVISHYD 445
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANI 203
+ FDR+LLDAPCSG G + + N D+K I A++
Sbjct: 446 GRQFPKVVG-----------GFDRVLLDAPCSGTGV--ISKDPAVKTNKDEKDILRCAHL 492
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
QK+LL + V+ G G LVYCTCS++VEENE V+ + L + V LV T
Sbjct: 493 QKELLLSAIDSVNATSKTG-------GYLVYCTCSITVEENEWVVDYALKKR-NVRLVPT 544
Query: 264 LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
G +G + +RF P L T R N D GFFI K +K
Sbjct: 545 GLDFGQEGFT--------RFRERRFHPSLRSTRRFYPHTHNMD--GFFIAKFKK 588
>gi|168186789|ref|ZP_02621424.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum C str. Eklund]
gi|169295225|gb|EDS77358.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum C str. Eklund]
Length = 443
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 123/246 (50%), Gaps = 42/246 (17%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ ++L +D + G VLD+C+APG K THI+ +MN+TG + A D +++ ++E
Sbjct: 235 VQDESAMLVAPSIDAKEGATVLDLCSAPGGKTTHISEIMNNTGIVKAFDIHDNKISLVKE 294
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
K+L +++I D+ + N K + S D +L+D PCSG G ++P
Sbjct: 295 NAKRLGINNIACAEMDACKFN----------KELENSADMVLIDVPCSGLGIIRKKPEI- 343
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ K K IQKK+++ ++V +K+G LVY TC+++ +ENE
Sbjct: 344 ---KYTKDVKSTKDIVAIQKKIMENAAKYV-----------RKEGTLVYSTCTINKDENE 389
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
I W + + PE + V+ L M + + ED V ++P N GFF
Sbjct: 390 KNINWFIKKFPEYK-VEPLFYGNMNNIIYN----EDGTV------TILP---NKYMDGFF 435
Query: 306 ICKLRK 311
I KL+K
Sbjct: 436 IAKLKK 441
>gi|418005334|ref|ZP_12645329.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
casei UW1]
gi|410547263|gb|EKQ21500.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
casei UW1]
Length = 446
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/247 (35%), Positives = 124/247 (50%), Gaps = 38/247 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMN--DTGTLIALDKSKPRVTKL 126
+Q+ S+L LD+QPG VLD CAAPG K THIA ++ G + ALD +V +
Sbjct: 234 MQDESSMLVAPSLDIQPGDVVLDACAAPGGKTTHIAQYLDPKQGGQVTALDLHANKVRLI 293
Query: 127 EETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFY 185
+ K+L L+ I V D+ ++ T+ SFD+IL+DAPCSG G
Sbjct: 294 NKNAKRLGLTDRIHAQVLDARKVATT---------FSANSFDKILVDAPCSGLG----LI 340
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ K + A++Q+ L A+ V+ P LK G L Y TC++ EEN+
Sbjct: 341 RRKPEIKYTKTPEDPAHLQQIQL-AILNSVA-------PTLKIGGRLTYSTCTMVKEENQ 392
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
V+A L HPE E V ++P L K L HK A + +Q F P D +TD GFF
Sbjct: 393 DVVAQFLAAHPEFEQV-SVPTL--KPL-HK---AHNAPALQLF-----PDDYDTD--GFF 438
Query: 306 ICKLRKK 312
I L ++
Sbjct: 439 IASLIRR 445
>gi|417996491|ref|ZP_12636770.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
casei M36]
gi|418013111|ref|ZP_12652764.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
casei Lpc-37]
gi|410535337|gb|EKQ09962.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
casei M36]
gi|410556058|gb|EKQ29980.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
casei Lpc-37]
Length = 446
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/247 (35%), Positives = 124/247 (50%), Gaps = 38/247 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMN--DTGTLIALDKSKPRVTKL 126
+Q+ S+L LD+QPG VLD CAAPG K THIA ++ G + ALD +V +
Sbjct: 234 MQDESSMLVAPSLDIQPGDVVLDACAAPGGKTTHIAQYLDPKQGGQVTALDLHANKVRLI 293
Query: 127 EETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFY 185
+ K+L L+ I V D+ ++ T+ SFD+IL+DAPCSG G
Sbjct: 294 NKNAKRLGLTDRIHAQVLDARKVATT---------FSANSFDKILVDAPCSGLG----LI 340
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ K + A++Q+ L A+ V+ P LK G L Y TC++ EEN+
Sbjct: 341 RRKPEIKYTKTPEDPAHLQQIQL-AILNSVA-------PTLKIGGRLTYSTCTMVKEENQ 392
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
V+A L HPE E V ++P L K L HK A + +Q F P D +TD GFF
Sbjct: 393 DVVAQFLAAHPEFEQV-SVPTL--KPL-HK---AHNAPALQLF-----PDDYDTD--GFF 438
Query: 306 ICKLRKK 312
I L ++
Sbjct: 439 IASLIRR 445
>gi|396080811|gb|AFN82432.1| NOL1/NOL2/sun tRNA/rRNA cytosine-C5-methylase [Encephalitozoon
romaleae SJ-2008]
Length = 306
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 85/289 (29%), Positives = 135/289 (46%), Gaps = 52/289 (17%)
Query: 42 LFRGVAVEITNV-LSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
L RG V++ ++ + V SS+ I P LAG+Y ++++ G
Sbjct: 51 LLRGRGVDLDDLSWTDSGCVVFKSSVPIGAT-PEYLAGYYCLQGAASMLPVLNMELKEGL 109
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
V+D+CAAPG K THIA LM +TG + A D ++ R+ L+ I+++ + + D +
Sbjct: 110 TVVDLCAAPGGKTTHIAALMENTGIIYANDVNEDRMAGLKSNIQRMGVRNCIVMNMDGRK 169
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYANIQ 204
+N DR+LLDAPCSG G + P + +D+ A +Q
Sbjct: 170 VNVG-------------KVDRVLLDAPCSGTGVISKDPSVKTTRTRSEIDR----MATLQ 212
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL 264
K+L+ G +L+ GIL+Y TCS+ V+ENE V+ ++L + P ++ Q
Sbjct: 213 KELI-----------LHGFEMLRPGGILMYSTCSVLVKENEEVVNYLLTKCPSAKMAQCE 261
Query: 265 PQLGMKG-LAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKK 312
+G G ++ K M R + P N D GFF K+ KK
Sbjct: 262 VDIGKDGFMSFKGRNYNGSLKMAR---RIYPHVHNMD--GFFYAKIVKK 305
>gi|313899981|ref|ZP_07833481.1| NOL1/NOP2/sun family protein [Clostridium sp. HGF2]
gi|312955033|gb|EFR36701.1| NOL1/NOP2/sun family protein [Clostridium sp. HGF2]
Length = 442
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 85/258 (32%), Positives = 122/258 (47%), Gaps = 49/258 (18%)
Query: 69 LQNLPSILAGHY-------------LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIA 115
L N P+ LAG + LDVQ VLDMCAAPG K T IA + D G L++
Sbjct: 71 LGNHPAHLAGLFYMQEPSAASAVEVLDVQRNDWVLDMCAAPGGKSTQIAAKLQDRGFLVS 130
Query: 116 LDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPC 175
+ R L +++L S NT Q + M FDR+L+DAPC
Sbjct: 131 NEIESRRAQILLSNMERLGFSRCMI-------TNTRPQQIAKEMS---GWFDRVLVDAPC 180
Query: 176 SGFGQRPMFYNANSFLN--LDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILV 233
SG G MF + ++ ++ + + A Q +L + Y LK+DG LV
Sbjct: 181 SGEG---MFKKHSKAMDDWSEEHVLACAQRQLHILDSAY-----------AALKEDGTLV 226
Query: 234 YCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLI 293
Y TC+ S+EENE V+ + +HP++ELV G +GL + DL+ E ++R +
Sbjct: 227 YSTCTYSMEENEQVVYAFMKQHPDMELVDCGVTFGRRGLPYLDLDTEK---LRR----IF 279
Query: 294 PTDRNTDTIGFFICKLRK 311
P D+ G F+ K RK
Sbjct: 280 PMDQGE---GHFVAKFRK 294
>gi|449669945|ref|XP_002159649.2| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
[Hydra magnipapillata]
Length = 715
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 94/295 (31%), Positives = 134/295 (45%), Gaps = 44/295 (14%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV ++ S+V V DSS+ I P LAGHY L Q +
Sbjct: 284 LINRGVNLDPIGKWSKVGLVVYDSSVPIGA-TPEYLAGHYMIQGASSMLPVIALSPQENE 342
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
++LDMC+APG K T+I LM +TG ++A D R+ L I +L +++ YD
Sbjct: 343 RILDMCSAPGGKTTYIGSLMKNTGVIVANDAKAERLKSLIGNIHRLGITNTIVCNYDGRS 402
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFG--QRPMFYNANSFLNLDKKIKSYANIQK 205
FDR+LLDAPCSG G + N +K I+ +++QK
Sbjct: 403 FPKVMG-----------GFDRVLLDAPCSGTGVISKDEQVKTNKS---EKDIQRCSHVQK 448
Query: 206 KLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLP 265
+LL A V G G +VY TCS+ VEENE V+ + L R V+LV T
Sbjct: 449 ELLLAAIDSVDAKSKTG-------GYIVYSTCSIMVEENEWVVDYALSRR-NVKLVPTGI 500
Query: 266 QLGMKGLA-HKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKKYGEAPEI 319
G +G ++D + R P N D GFF+ KL+K + P +
Sbjct: 501 DFGKEGYTRYRDKRFHHTMNLTR---RFYPHTHNMD--GFFVAKLKKFANKIPNV 550
>gi|169349816|ref|ZP_02866754.1| hypothetical protein CLOSPI_00554 [Clostridium spiroforme DSM 1552]
gi|169293384|gb|EDS75517.1| ribosomal RNA small subunit methyltransferase B [Clostridium
spiroforme DSM 1552]
Length = 481
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 128/247 (51%), Gaps = 58/247 (23%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S L L VLDMC APG+K TH+A LMN+ G +IA D + ++ ++E
Sbjct: 287 IQDESSQLVAPLLSPSEDDLVLDMCCAPGSKTTHLAALMNNKGKIIACDLFEHKIKLVKE 346
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP-MF 184
+K+L +S+++ H D+T + + K + +FD+ILLDAPCSG G ++P +
Sbjct: 347 NLKRLNISNVELHAIDATTL---------KEKYLEGTFDKILLDAPCSGLGVMKRKPEIK 397
Query: 185 YNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
Y+ +S ++ + +Q KLL Y LLK +G +VY TC+++ +EN
Sbjct: 398 YHDSSVMD------TIIPLQAKLLDNAYY-----------LLKNNGKMVYSTCTINKKEN 440
Query: 245 EAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
E +I L ++P++++V E++ ++ P + D+ GF
Sbjct: 441 EQMIKKFLDKYPDMKIV------------------EERKIL-----PFV-----YDSDGF 472
Query: 305 FICKLRK 311
++CKL K
Sbjct: 473 YMCKLEK 479
>gi|423401293|ref|ZP_17378466.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG2X1-2]
gi|423457952|ref|ZP_17434749.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG5X2-1]
gi|423478003|ref|ZP_17454718.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG6X1-1]
gi|401148336|gb|EJQ55829.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG5X2-1]
gi|401654283|gb|EJS71826.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG2X1-2]
gi|402428165|gb|EJV60262.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG6X1-1]
Length = 444
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 118/247 (47%), Gaps = 38/247 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G +VLD CAAPG K THIA + TG +++LD +V +++
Sbjct: 232 IQDESSMLVARALEPNEGDEVLDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQ 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
++L L +++T D+ ++ E+FD+IL+DAPCSGFG ++P
Sbjct: 292 QAERLGLENVETKALDARKVQEH---------FANETFDKILVDAPCSGFGVIRRKPDIK 342
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ + ++ + IQ +L+ + PLLK+ G LVY TC++ ENE
Sbjct: 343 LGKNKGDSER----LSTIQLAILEKI-----------APLLKQGGRLVYSTCTIEKIENE 387
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
VI L HPE E T+ K + L R P TD GF+
Sbjct: 388 QVIKQFLQEHPEFEWDTTI-----KDRMPEKLNPYIDEGQVRILPHYFATD------GFY 436
Query: 306 ICKLRKK 312
I LRKK
Sbjct: 437 IACLRKK 443
>gi|399924362|ref|ZP_10781720.1| 16S rRNA methyltransferase B [Peptoniphilus rhinitidis 1-13]
Length = 432
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 122/264 (46%), Gaps = 46/264 (17%)
Query: 18 FVSVLRLPARQRPSLSIYCYALDILFRGVAVEITNVLSQVPNVALDSSMGIL-------- 69
F L ++PS +I L + +TN ++ + +++ IL
Sbjct: 163 FTKKLLKANNEKPSFTIRVNTLKTNREELIKSLTNDGFEIEDTNFKNAINILNPRGIIDT 222
Query: 70 ----------QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKS 119
Q+L SIL +L+ KVLD+CAAPG K TH+A +M +TG ++A DKS
Sbjct: 223 KYFENGEFYVQDLGSILVSTFLNPSKDSKVLDLCAAPGGKSTHLAEIMENTGEIVACDKS 282
Query: 120 KPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG 179
K ++ +EE ++L + +I+T V D+ +N + FD +L+DAPCSG G
Sbjct: 283 KKKIKLIEENARRLGVKNIKTFVNDAEILNKDFL----------DKFDYVLVDAPCSGTG 332
Query: 180 QRPMFYNANSFLNLDKKIKSYAN---IQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT 236
Y + +K IK N IQ K+L+ + LK G LVY T
Sbjct: 333 ----LYRKKPDIKWNKDIKDLKNLSEIQLKILENAKNY-----------LKLGGHLVYST 377
Query: 237 CSLSVEENEAVIAWILHRHPEVEL 260
CSLS ENE V+ L + ++
Sbjct: 378 CSLSKIENEDVVYKFLEENENFKI 401
>gi|354467281|ref|XP_003496098.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2
[Cricetulus griseus]
gi|344242424|gb|EGV98527.1| Putative ribosomal RNA methyltransferase NOP2 [Cricetulus griseus]
Length = 790
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 99/316 (31%), Positives = 143/316 (45%), Gaps = 56/316 (17%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+ V DSS+ I P LAGHY L Q
Sbjct: 307 AQALINRGVNLDPLGKWSKSGLVVYDSSVPIGAT-PEYLAGHYMLQGASSMLPVMALAPQ 365
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDMC APG K ++IA LM +TG ++A D + R+ + + +L +++ YD
Sbjct: 366 EHERILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYD 425
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANI 203
+ FDR+LLDAPCSG G + + N D+K + A++
Sbjct: 426 GRQFPKVVG-----------GFDRVLLDAPCSGTGV--ISKDPAVKTNKDEKDVLRCAHL 472
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
QK+LL + V+ G G LVYCTCS++VEENE V+ + L + V LV T
Sbjct: 473 QKELLLSAIDSVNAASKTG-------GYLVYCTCSITVEENEWVVDYALKKR-NVRLVPT 524
Query: 264 LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRKKYGEAP 317
G +G + +RF P L T R N D GFFI K +K P
Sbjct: 525 GLDFGQEGFT--------RFRERRFHPSLRSTRRFYPHTHNMD--GFFIAKFKKFSNSIP 574
Query: 318 EIYIHPHLNDCIVIGP 333
+ PH + P
Sbjct: 575 Q----PHTGNVAAAIP 586
>gi|229174531|ref|ZP_04302063.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
MM3]
gi|228609091|gb|EEK66381.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
MM3]
Length = 402
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 118/247 (47%), Gaps = 38/247 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G +VLD CAAPG K THIA + TG +++LD +V +++
Sbjct: 190 IQDESSMLVARALEPNEGDEVLDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQ 249
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
++L L +++T D+ ++ E+FD+IL+DAPCSGFG ++P
Sbjct: 250 QAERLGLENVETKALDARKVQEH---------FANETFDKILVDAPCSGFGVIRRKPDIK 300
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ + ++ + IQ +L+ + PLLK+ G LVY TC++ ENE
Sbjct: 301 LGKNKGDSER----LSTIQLAILEKI-----------APLLKQGGRLVYSTCTIEKIENE 345
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
VI L HPE E T+ K + L R P TD GF+
Sbjct: 346 QVIKQFLQEHPEFEWDTTI-----KDRMPEKLNPYIDEGQVRILPHYFATD------GFY 394
Query: 306 ICKLRKK 312
I LRKK
Sbjct: 395 IACLRKK 401
>gi|409997469|ref|YP_006751870.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
casei W56]
gi|406358481|emb|CCK22751.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
casei W56]
Length = 342
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 90/248 (36%), Positives = 125/248 (50%), Gaps = 39/248 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMN--DTGTLIALDKSKPRVTKL 126
+Q+ S+L LD+QPG VLD CAAPG K THIA ++ G + ALD +V +
Sbjct: 130 MQDESSMLVAPSLDIQPGDVVLDACAAPGGKTTHIAQYLDPKQGGQVTALDLHANKVRLI 189
Query: 127 EETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFY 185
+ K+L L+ I V D+ ++ T+ SFD+IL+DAPCSG G
Sbjct: 190 NKNAKRLGLTDRIHAQVLDARKVATT---------FPANSFDKILVDAPCSGLG----LI 236
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ K + A++Q+ L A+ V+ P LK G L Y TC++ EEN+
Sbjct: 237 RRKPEIKYTKTPEDPAHLQQIQL-AILNSVA-------PTLKIGGRLTYSTCTMVKEENQ 288
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
V+A L HPE E V ++P L K L HK A + +Q F P D +TD GFF
Sbjct: 289 DVVAQFLAAHPEFEQV-SVPTL--KPL-HK---AHNAPALQLF-----PDDYDTD--GFF 334
Query: 306 ICKL-RKK 312
I L R+K
Sbjct: 335 IASLIRRK 342
>gi|228916502|ref|ZP_04080068.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228928913|ref|ZP_04091945.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228935179|ref|ZP_04098006.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228947584|ref|ZP_04109874.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|229123379|ref|ZP_04252583.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus 95/8201]
gi|229186105|ref|ZP_04313274.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus BGSC
6E1]
gi|228597281|gb|EEK54932.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus BGSC
6E1]
gi|228660155|gb|EEL15791.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus 95/8201]
gi|228812104|gb|EEM58435.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228824544|gb|EEM70349.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228830720|gb|EEM76325.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228843081|gb|EEM88163.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
Length = 360
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 119/245 (48%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G +LD CAAPG K THIA + TG +++LD +V +++
Sbjct: 148 IQDESSMLVARALEPDEGDVILDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQ 207
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
++L L +++T D+ ++ E+FD+IL+DAPCSGFG + +
Sbjct: 208 QAERLGLENVETKALDARKVQEH---------FANETFDKILVDAPCSGFG--VIRRKPD 256
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 257 IKLGKDKGDSERLSMIQFAILEKIA-----------PLLKQGGRLVYSTCTIEKIENEQV 305
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E T+ + + L+ E + Q + F T GF+I
Sbjct: 306 IERFLQEHPEFEWDTTIKERMPEKLSPYMDEGQVQILPHYFA-----------TDGFYIA 354
Query: 308 KLRKK 312
LRKK
Sbjct: 355 CLRKK 359
>gi|395743839|ref|XP_002822860.2| PREDICTED: putative ribosomal RNA methyltransferase NOP2 isoform 1
[Pongo abelii]
Length = 810
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 95/294 (32%), Positives = 137/294 (46%), Gaps = 52/294 (17%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+ V DSS+ I P LAGHY L Q
Sbjct: 323 AQALINRGVNLDPLGKWSKTGLVVYDSSVPIGAT-PEYLAGHYILQGASSMLPVMALAPQ 381
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDMC APG K +++A LM +TG ++A D + R+ + + +L +++ YD
Sbjct: 382 EHERILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTVISHYD 441
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANI 203
+ FDR+LLDAPCSG G + + N D+K I A++
Sbjct: 442 GRQFPKVVG-----------GFDRVLLDAPCSGTGV--ISKDPAVKTNKDEKDILRCAHL 488
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
QK+LL + V+ G G LVYCTCS++VEENE V+ + L + V LV T
Sbjct: 489 QKELLLSAIDSVNATSKTG-------GYLVYCTCSITVEENEWVVDYALKKR-NVRLVPT 540
Query: 264 LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
G +G + +RF P L T R N D GFFI K +K
Sbjct: 541 GLDFGQEGFT--------RFRERRFHPSLRSTRRFYPHTHNMD--GFFIAKFKK 584
>gi|427736995|ref|YP_007056539.1| ribosomal RNA small subunit methyltransferase RsmB [Rivularia sp.
PCC 7116]
gi|427372036|gb|AFY55992.1| ribosomal RNA small subunit methyltransferase RsmB [Rivularia sp.
PCC 7116]
Length = 459
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 93/326 (28%), Positives = 146/326 (44%), Gaps = 58/326 (17%)
Query: 11 LWLDRAGFVSVLRLPA--RQRPSLSIYCYALDILFRGVAVEITN--VLSQ-VPNV----A 61
+W+++ GF +L Q P++ + L V + N + SQ +PN+
Sbjct: 170 IWVEQFGFSETEKLCEWMNQTPNIDLRVNQLCSSIEEVETALKNQGISSQRIPNLPQALR 229
Query: 62 LDSSMGILQNLPSILAGHY-------------LDVQPGQKVLDMCAAPGNKLTHIALLMN 108
L +S G ++NLP G + L+ QP + ++D CAAPG K THIA LM
Sbjct: 230 LLNSPGAIKNLPGFNEGWWTVQDSSAQLVSYLLNPQPHEVIIDACAAPGGKTTHIAELMG 289
Query: 109 DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDR 168
DTG + A D+++ R+ KL++ ++L L S++ + DS + +Q + +S D+
Sbjct: 290 DTGQIYACDRTESRLRKLQQNTQRLNLKSVEVCLGDSRSL---TQFE--------KSADK 338
Query: 169 ILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKK 228
+LLD PCSG G +A + IK +Q +LL FV K
Sbjct: 339 VLLDVPCSGLGTLHRHADAR-WRQTPDNIKELCVLQAELLLHSSTFV-----------KD 386
Query: 229 DGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRF 288
G LVY TC+L +ENE I L + E+ + A +
Sbjct: 387 SGSLVYSTCTLHPDENEGAIKSFLESNSNWEIQ-----------SPDTYSAIHEYATSEG 435
Query: 289 GPPLIPTDRNTDTIGFFICKLRKKYG 314
++P N D GFF+ +LRKK+
Sbjct: 436 WIKVLPHKHNMD--GFFMVRLRKKHN 459
>gi|14521110|ref|NP_126585.1| sun protein (fmu protein) [Pyrococcus abyssi GE5]
gi|5458327|emb|CAB49816.1| Sun/NOL1/NOP nucleolar protein [Pyrococcus abyssi GE5]
gi|380741676|tpe|CCE70310.1| TPA: sun protein (fmu protein) [Pyrococcus abyssi GE5]
Length = 450
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 124/244 (50%), Gaps = 38/244 (15%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
++Q+L S H L+ +PG++VLD+ AAPG+K H A LM + G ++A+D S R+ K++
Sbjct: 244 VIQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYDRLMKMK 303
Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNA 187
E +K+L + +++ ++ Q I+R E F++I+LDAPCS G F
Sbjct: 304 ERMKRLGVKNVKL-------VHADGQSFIDR-----EGFEKIILDAPCSSSGTYRQFPEV 351
Query: 188 NSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
+ ++KIK ++Q+ +L YR L+ G + Y TCS+ ++ENE
Sbjct: 352 KWRFD-EEKIKRVISVQRNMLLNAYR-----------NLRSGGEMTYSTCSIRIDENEEN 399
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
+ + L + E+V + G KG LE ++ F D N+ FFI
Sbjct: 400 VIFALEKG--FEIVDYPFEWGDKGF----LEIGEKV----FRAWTHKHDCNS----FFIA 445
Query: 308 KLRK 311
KLRK
Sbjct: 446 KLRK 449
>gi|415886521|ref|ZP_11548301.1| sun protein [Bacillus methanolicus MGA3]
gi|387587208|gb|EIJ79531.1| sun protein [Bacillus methanolicus MGA3]
Length = 446
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/256 (32%), Positives = 125/256 (48%), Gaps = 40/256 (15%)
Query: 61 ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSK 120
A + + +Q+ S+L + L+++ +LD AAPG K THIA +N TG +I+LD +
Sbjct: 226 AFKNGLITIQDESSMLVAYALNIEENFTILDAAAAPGGKSTHIAEKLNQTGKVISLDLHE 285
Query: 121 PRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG- 179
+V + ++L L +I+ V DS + ESFDRILLDAPCSG G
Sbjct: 286 HKVKLIGRAAERLGLDNIELKVLDSR---------LAPEHFAAESFDRILLDAPCSGLGV 336
Query: 180 --QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC 237
++P + ++ + +Q+ LL++V PLLKK GILVY TC
Sbjct: 337 MRRKPDL----KYTKTEEDVYKLKQVQQDLLKSV-----------APLLKKGGILVYSTC 381
Query: 238 SLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAED-QAVMQRFGPPLIPTD 296
++ EEN V+ L + E TL KD E + ++ F ++P D
Sbjct: 382 TVDREENHEVVESFLKGNNLFEGDATL----------KDRMPEAVKPLVDDFMLQILPQD 431
Query: 297 RNTDTIGFFICKLRKK 312
+D GF+I LRKK
Sbjct: 432 FGSD--GFYIACLRKK 445
>gi|30263868|ref|NP_846245.1| sun protein [Bacillus anthracis str. Ames]
gi|47529294|ref|YP_020643.1| sun protein [Bacillus anthracis str. 'Ames Ancestor']
gi|49186715|ref|YP_029967.1| sun protein [Bacillus anthracis str. Sterne]
gi|49478421|ref|YP_037926.1| sun protein [Bacillus thuringiensis serovar konkukian str. 97-27]
gi|118479087|ref|YP_896238.1| sun protein [Bacillus thuringiensis str. Al Hakam]
gi|165872297|ref|ZP_02216934.1| sun protein [Bacillus anthracis str. A0488]
gi|167636414|ref|ZP_02394713.1| sun protein [Bacillus anthracis str. A0442]
gi|167641141|ref|ZP_02399396.1| sun protein [Bacillus anthracis str. A0193]
gi|170688847|ref|ZP_02880050.1| sun protein [Bacillus anthracis str. A0465]
gi|170708813|ref|ZP_02899249.1| sun protein [Bacillus anthracis str. A0389]
gi|177654922|ref|ZP_02936639.1| sun protein [Bacillus anthracis str. A0174]
gi|190565749|ref|ZP_03018668.1| sun protein [Bacillus anthracis str. Tsiankovskii-I]
gi|196035830|ref|ZP_03103232.1| sun protein [Bacillus cereus W]
gi|196047441|ref|ZP_03114653.1| sun protein [Bacillus cereus 03BB108]
gi|218904995|ref|YP_002452829.1| sun protein [Bacillus cereus AH820]
gi|227813227|ref|YP_002813236.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
str. CDC 684]
gi|229603771|ref|YP_002868102.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
str. A0248]
gi|254683426|ref|ZP_05147286.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
str. CNEVA-9066]
gi|254721397|ref|ZP_05183186.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
str. A1055]
gi|254739848|ref|ZP_05197541.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
str. Kruger B]
gi|254751038|ref|ZP_05203077.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
str. Vollum]
gi|254756703|ref|ZP_05208732.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
str. Australia 94]
gi|301055356|ref|YP_003793567.1| sun protein [Bacillus cereus biovar anthracis str. CI]
gi|376267761|ref|YP_005120473.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
F837/76]
gi|386737687|ref|YP_006210868.1| Sun protein [Bacillus anthracis str. H9401]
gi|421507405|ref|ZP_15954325.1| 16S rRNA methyltransferase B [Bacillus anthracis str. UR-1]
gi|421639620|ref|ZP_16080211.1| 16S rRNA methyltransferase B [Bacillus anthracis str. BF1]
gi|423550386|ref|ZP_17526713.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
ISP3191]
gi|30258512|gb|AAP27731.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
str. Ames]
gi|47504442|gb|AAT33118.1| sun protein [Bacillus anthracis str. 'Ames Ancestor']
gi|49180642|gb|AAT56018.1| sun protein [Bacillus anthracis str. Sterne]
gi|49329977|gb|AAT60623.1| sun protein [Bacillus thuringiensis serovar konkukian str. 97-27]
gi|118418312|gb|ABK86731.1| sun protein [Bacillus thuringiensis str. Al Hakam]
gi|164711973|gb|EDR17513.1| sun protein [Bacillus anthracis str. A0488]
gi|167510921|gb|EDR86312.1| sun protein [Bacillus anthracis str. A0193]
gi|167528156|gb|EDR90943.1| sun protein [Bacillus anthracis str. A0442]
gi|170126298|gb|EDS95189.1| sun protein [Bacillus anthracis str. A0389]
gi|170667202|gb|EDT17962.1| sun protein [Bacillus anthracis str. A0465]
gi|172080433|gb|EDT65520.1| sun protein [Bacillus anthracis str. A0174]
gi|190562668|gb|EDV16634.1| sun protein [Bacillus anthracis str. Tsiankovskii-I]
gi|195991479|gb|EDX55445.1| sun protein [Bacillus cereus W]
gi|196021749|gb|EDX60444.1| sun protein [Bacillus cereus 03BB108]
gi|218535394|gb|ACK87792.1| sun protein [Bacillus cereus AH820]
gi|227005311|gb|ACP15054.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
str. CDC 684]
gi|229268179|gb|ACQ49816.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
str. A0248]
gi|300377525|gb|ADK06429.1| sun protein [Bacillus cereus biovar anthracis str. CI]
gi|364513561|gb|AEW56960.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
F837/76]
gi|384387539|gb|AFH85200.1| Sun protein [Bacillus anthracis str. H9401]
gi|401190002|gb|EJQ97052.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
ISP3191]
gi|401822539|gb|EJT21689.1| 16S rRNA methyltransferase B [Bacillus anthracis str. UR-1]
gi|403393285|gb|EJY90530.1| 16S rRNA methyltransferase B [Bacillus anthracis str. BF1]
Length = 444
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 119/245 (48%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G +LD CAAPG K THIA + TG +++LD +V +++
Sbjct: 232 IQDESSMLVARALEPDEGDVILDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQ 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
++L L +++T D+ ++ E+FD+IL+DAPCSGFG + +
Sbjct: 292 QAERLGLENVETKALDARKVQEH---------FANETFDKILVDAPCSGFG--VIRRKPD 340
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 341 IKLGKDKGDSERLSMIQFAILEKI-----------APLLKQGGRLVYSTCTIEKIENEQV 389
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E T+ + + L+ E + Q + F T GF+I
Sbjct: 390 IERFLQEHPEFEWDTTIKERMPEKLSPYMDEGQVQILPHYFA-----------TDGFYIA 438
Query: 308 KLRKK 312
LRKK
Sbjct: 439 CLRKK 443
>gi|50425343|ref|XP_461265.1| DEHA2F21054p [Debaryomyces hansenii CBS767]
gi|49656934|emb|CAG89654.1| DEHA2F21054p [Debaryomyces hansenii CBS767]
Length = 611
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 86/269 (31%), Positives = 122/269 (45%), Gaps = 44/269 (16%)
Query: 55 SQVPNVALDSSMG---ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTG 111
SQVP A + ILQ S L LD Q +++LDM AAPG K T+I+ +M +TG
Sbjct: 310 SQVPIGATPEYLAGQYILQAASSFLPVMALDPQENERILDMAAAPGGKTTYISAMMKNTG 369
Query: 112 TLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILL 171
+ A D +K R L I +L + YD+ FDRILL
Sbjct: 370 CVFANDANKARTKSLIANIHRLGCKNTIVCNYDAREFPKVIG-----------GFDRILL 418
Query: 172 DAPCSGFGQRPMFYNANSFLNLDKKIKSYANI---QKKLLQAVYRFVSLFDWQGIPLLKK 228
DAPCSG G + + + + K + I QK+LL + V G
Sbjct: 419 DAPCSGTG----VIAKDETVKVSRTEKDFMQIPHLQKQLLLSAIDSVDANSATG------ 468
Query: 229 DGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRF 288
G++VY TCS++VEENE+V+ + L + P V+LV Q+G +G + F
Sbjct: 469 -GVIVYSTCSVAVEENESVVDYALRKRPNVKLVDAGLQIGKEGFT--------SYRGKHF 519
Query: 289 GPPLIPTDR------NTDTIGFFICKLRK 311
P + T R N D GF++ K +K
Sbjct: 520 SPSISLTRRYYPHTYNVD--GFYVAKFKK 546
>gi|441670405|ref|XP_004092201.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 [Nomascus
leucogenys]
Length = 629
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 96/301 (31%), Positives = 138/301 (45%), Gaps = 52/301 (17%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+ V DSS+ I P LAGHY L Q
Sbjct: 322 AQALINRGVNLDPLGKWSKTGLVVYDSSVPIGAT-PEYLAGHYMLQGASSMLPVMALAPQ 380
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDMC APG K +++A LM +TG ++A D + R+ + + +L +++ YD
Sbjct: 381 EHERILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTVISHYD 440
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANI 203
+ FDR+LLDAPCSG G + + N D+K I A++
Sbjct: 441 GRQFPKVVG-----------GFDRVLLDAPCSGTGV--ISKDPAVKTNKDEKDILRCAHL 487
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
QK+LL + V+ G G LVYCTCS+ VEENE V+ + L + V LV T
Sbjct: 488 QKELLLSAIDSVNATSKTG-------GYLVYCTCSIMVEENEWVVDYALKKR-NVRLVPT 539
Query: 264 LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRKKYGEAP 317
G +G + +RF P L T R N D GFFI K +K P
Sbjct: 540 GLDFGQEGFT--------RFRERRFHPTLRSTRRFYPHTHNMD--GFFIAKFKKFSNSIP 589
Query: 318 E 318
+
Sbjct: 590 Q 590
>gi|254735904|ref|ZP_05193610.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
str. Western North America USA6153]
Length = 444
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 120/245 (48%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G +LD CAAPG K THIA + TG +++LD +V +++
Sbjct: 232 IQDESSMLVARALEPDEGDVILDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQ 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
++L L +++T D+ ++ E+FD+IL+DAPCSGFG + +
Sbjct: 292 QAERLGLENVETKALDARKVQEH---------FANETFDKILVDAPCSGFG--VIRRKPD 340
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 341 IKLGKDKGDSERLSMIQFAILEKI-----------APLLKQGGRLVYSTCTIEKIENEQV 389
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E T+ + + L+ E + Q + P TD GF+I
Sbjct: 390 IERFLQEHPEFEWDTTIKERMPEKLSPYMDEGQVQIL-----PHYFATD------GFYIA 438
Query: 308 KLRKK 312
LRKK
Sbjct: 439 CLRKK 443
>gi|114643067|ref|XP_001162313.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 isoform 2
[Pan troglodytes]
gi|397499214|ref|XP_003820354.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 isoform 2
[Pan paniscus]
gi|410211964|gb|JAA03201.1| NOP2 nucleolar protein homolog [Pan troglodytes]
gi|410259618|gb|JAA17775.1| NOP2 nucleolar protein homolog [Pan troglodytes]
gi|410259622|gb|JAA17777.1| NOP2 nucleolar protein homolog [Pan troglodytes]
gi|410300872|gb|JAA29036.1| NOP2 nucleolar protein homolog [Pan troglodytes]
gi|410300874|gb|JAA29037.1| NOP2 nucleolar protein homolog [Pan troglodytes]
gi|410348608|gb|JAA40908.1| NOP2 nucleolar protein homolog [Pan troglodytes]
Length = 808
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 95/294 (32%), Positives = 137/294 (46%), Gaps = 52/294 (17%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+ V DSS+ I P LAGHY L Q
Sbjct: 321 AQALINRGVNLDPLGKWSKTGLVVYDSSVPIGAT-PEYLAGHYMLQGASSMLPVMALAPQ 379
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDMC APG K +++A LM +TG ++A D + R+ + + +L +++ YD
Sbjct: 380 EHERILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYD 439
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANI 203
+ FDR+LLDAPCSG G + + N D+K I A++
Sbjct: 440 GRQFPKVVG-----------GFDRVLLDAPCSGTGV--ISKDPAVKTNKDEKDILRCAHL 486
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
QK+LL + V+ G G LVYCTCS++VEENE V+ + L + V LV T
Sbjct: 487 QKELLLSAIDSVNATSKTG-------GYLVYCTCSITVEENEWVVDYALKKR-NVRLVPT 538
Query: 264 LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
G +G + +RF P L T R N D GFFI K +K
Sbjct: 539 GLDFGQEGFT--------RFQERRFHPSLRSTRRFYPHTHNMD--GFFIAKFKK 582
>gi|196038686|ref|ZP_03105994.1| sun protein [Bacillus cereus NVH0597-99]
gi|196030409|gb|EDX69008.1| sun protein [Bacillus cereus NVH0597-99]
Length = 444
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 119/245 (48%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G +LD CAAPG K THIA + TG +++LD +V +++
Sbjct: 232 IQDESSMLVARALEPDEGDVILDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQ 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
++L L +++T D+ ++ E+FD+IL+DAPCSGFG + +
Sbjct: 292 QAERLGLENVETKALDARKVQEH---------FANETFDKILVDAPCSGFG--VIRRKPD 340
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 341 IKLGKDKGDSERLSMIQFAILEKI-----------APLLKQGGRLVYSTCTIEKIENEQV 389
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E T+ + + L+ E + Q + F T GF+I
Sbjct: 390 IERFLQEHPEFEWDTTIKERMPEKLSPYMDEGQVQILPHYFA-----------TDGFYIA 438
Query: 308 KLRKK 312
LRKK
Sbjct: 439 CLRKK 443
>gi|418011058|ref|ZP_12650826.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
casei Lc-10]
gi|410553050|gb|EKQ27060.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
casei Lc-10]
Length = 446
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/247 (35%), Positives = 123/247 (49%), Gaps = 38/247 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMN--DTGTLIALDKSKPRVTKL 126
+Q+ S+L LD+QPG VLD CAAPG K THIA ++ G + ALD +V +
Sbjct: 234 MQDESSMLVAPSLDIQPGDAVLDACAAPGGKTTHIAQYLDPKQGGQVTALDLHANKVRLI 293
Query: 127 EETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFY 185
+ K+L L+ I V D+ ++ T+ SFD+IL+DAPCSG G
Sbjct: 294 NKNAKRLGLTDRIHAQVLDARKVATT---------FPANSFDKILVDAPCSGLG----LI 340
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ K A++Q+ L A+ V+ P LK G L Y TC++ EEN+
Sbjct: 341 RRKPEIKYTKTPDDPAHLQQIQL-AILNSVA-------PTLKIGGRLTYSTCTMVKEENQ 392
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
V+A L HPE E V ++P L K L HK A + +Q F P D +TD GFF
Sbjct: 393 DVVAQFLAAHPEFEQV-SVPTL--KPL-HK---AHNAPALQLF-----PDDYDTD--GFF 438
Query: 306 ICKLRKK 312
I L ++
Sbjct: 439 IASLIRR 445
>gi|156842997|ref|XP_001644568.1| hypothetical protein Kpol_1003p15 [Vanderwaltozyma polyspora DSM
70294]
gi|156115214|gb|EDO16710.1| hypothetical protein Kpol_1003p15 [Vanderwaltozyma polyspora DSM
70294]
Length = 633
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 126/275 (45%), Gaps = 56/275 (20%)
Query: 55 SQVPNVALDSSMG---ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTG 111
SQVP A + ILQ S L LD Q ++VLDM AAPG K T+I+ LM +TG
Sbjct: 327 SQVPIGATSEYLAGQYILQAASSFLPVVALDPQENERVLDMAAAPGGKTTYISALMKNTG 386
Query: 112 TLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILL 171
+ A D +K R L I +L ++ YD+ FDRILL
Sbjct: 387 CVFANDANKARTKSLIANIHRLGCTNTIVCNYDAREFPKVIG-----------GFDRILL 435
Query: 172 DAPCSGFGQRPMFYNANSFLNLDKKIKSYA---------NIQKKLLQAVYRFVSLFDWQG 222
DAPCSG G + D+ +KS ++QK+LL + V G
Sbjct: 436 DAPCSGTG----------VIGKDQSVKSSRTEKDFIQIPHLQKQLLLSAIDSVDANSKTG 485
Query: 223 IPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQ 282
G++VY TCS++VEE+EAV+ + L + P V+LV++ +G +G
Sbjct: 486 -------GVIVYSTCSVAVEEDEAVVDYALRKRPNVKLVESGLAIGKEGFT--------S 530
Query: 283 AVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
++F P L T R N D GF++ K +K
Sbjct: 531 FRGKKFHPSLKLTRRYYPHTYNVD--GFYVAKFQK 563
>gi|401623874|gb|EJS41955.1| nop2p [Saccharomyces arboricola H-6]
Length = 618
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 89/296 (30%), Positives = 133/296 (44%), Gaps = 55/296 (18%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ ++V DS + I P LAGHY LD
Sbjct: 286 AQTLVNRGVNLQPIGSWTKVGLQIFDSQVPIGAT-PEYLAGHYILQAASSFLPVIALDPH 344
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDM AAPG K T+I+ +M +TG + A D +K R L I +L ++ YD
Sbjct: 345 ENERILDMAAAPGGKTTYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNTIVCNYD 404
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANI- 203
+ FDRILLDAPCSG G + + + + K + I
Sbjct: 405 AREFPKVIG-----------GFDRILLDAPCSGTG----VIGKDQSVKVSRTEKDFIQIP 449
Query: 204 --QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
QK+LL + V G G++VY TCS++VEE+EAV+ + L + P V+LV
Sbjct: 450 HLQKQLLLSAIDSVDCNSKHG-------GVIVYSTCSVAVEEDEAVVDYALRKRPNVKLV 502
Query: 262 QTLPQLGMKGLAHKDLEAEDQAVMQRFGPPL------IPTDRNTDTIGFFICKLRK 311
+T +G +G ++F P + P N D GFF+ K +K
Sbjct: 503 ETGLAIGKEGFT--------SYRGKKFHPSVKLARRYYPHTYNVD--GFFVAKFQK 548
>gi|385198059|ref|NP_001245237.1| putative ribosomal RNA methyltransferase NOP2 isoform 2 [Homo
sapiens]
gi|146289861|sp|P46087.2|NOP2_HUMAN RecName: Full=Putative ribosomal RNA methyltransferase NOP2;
AltName: Full=Nucleolar protein 1; AltName:
Full=Nucleolar protein 2 homolog; AltName:
Full=Proliferating-cell nucleolar antigen p120; AltName:
Full=Proliferation-associated nucleolar protein p120
gi|12653741|gb|AAH00656.1| NOP2 protein [Homo sapiens]
gi|118764015|gb|AAI28184.1| NOP2 protein [Homo sapiens]
Length = 812
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 95/294 (32%), Positives = 137/294 (46%), Gaps = 52/294 (17%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+ V DSS+ I P LAGHY L Q
Sbjct: 325 AQALINRGVNLDPLGKWSKTGLVVYDSSVPIGAT-PEYLAGHYMLQGASSMLPVMALAPQ 383
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDMC APG K +++A LM +TG ++A D + R+ + + +L +++ YD
Sbjct: 384 EHERILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYD 443
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANI 203
+ FDR+LLDAPCSG G + + N D+K I A++
Sbjct: 444 GRQFPKVVG-----------GFDRVLLDAPCSGTGV--ISKDPAVKTNKDEKDILRCAHL 490
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
QK+LL + V+ G G LVYCTCS++VEENE V+ + L + V LV T
Sbjct: 491 QKELLLSAIDSVNATSKTG-------GYLVYCTCSITVEENEWVVDYALKKR-NVRLVPT 542
Query: 264 LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
G +G + +RF P L T R N D GFFI K +K
Sbjct: 543 GLDFGQEGFT--------RFRERRFHPSLRSTRRFYPHTHNMD--GFFIAKFKK 586
>gi|423615874|ref|ZP_17591708.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD115]
gi|401260411|gb|EJR66584.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD115]
Length = 444
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 119/245 (48%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G+ VLD CAAPG K THIA + TG +++LD +V +++
Sbjct: 232 IQDESSMLVARALEPNEGETVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQ 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
++L L +++ D+ ++ E+FD+IL+DAPCSGFG + +
Sbjct: 292 QAERLGLENVEIKALDARKVQEH---------FANETFDKILVDAPCSGFG--VIRRKPD 340
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 341 IKLGKDKGDSERLSTIQLAILEKI-----------APLLKQGGRLVYSTCTIEKIENEQV 389
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E T+ + + L+ E + Q + F T GF+I
Sbjct: 390 IDKFLKEHPEFEWDTTIKERMPEKLSPYINEGQVQILPHYFA-----------TDGFYIA 438
Query: 308 KLRKK 312
LRKK
Sbjct: 439 CLRKK 443
>gi|227534879|ref|ZP_03964928.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus paracasei
subsp. paracasei ATCC 25302]
gi|227187635|gb|EEI67702.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus paracasei
subsp. paracasei ATCC 25302]
Length = 446
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/247 (35%), Positives = 124/247 (50%), Gaps = 38/247 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMN--DTGTLIALDKSKPRVTKL 126
+Q+ S+L LD+QPG VLD CAAPG K THIA ++ G + ALD +V +
Sbjct: 234 MQDESSMLVAPSLDIQPGDVVLDACAAPGGKTTHIAQYLDPKQGGQVTALDLHANKVRLI 293
Query: 127 EETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFY 185
+ K+L L+ I V D+ ++ T+ SFD+IL+DAPCSG G
Sbjct: 294 NKNAKRLGLTDRIHAQVLDARKVATT---------FPANSFDKILVDAPCSGLG----LI 340
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ K + A++Q+ L A+ V+ P LK G L Y TC++ EEN+
Sbjct: 341 RRKPEIKYTKTPEDPAHLQQIQL-AILNSVA-------PTLKIGGRLTYSTCTMVKEENQ 392
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
V+A L HPE E V ++P L K L HK A + +Q F P D +TD GFF
Sbjct: 393 DVVAQFLAAHPEFEQV-SVPTL--KPL-HK---AHNAPALQLF-----PDDYDTD--GFF 438
Query: 306 ICKLRKK 312
I L ++
Sbjct: 439 IASLIRR 445
>gi|416350348|ref|ZP_11680855.1| 16S rRNA methyltransferase B [Clostridium botulinum C str.
Stockholm]
gi|338196305|gb|EGO88506.1| 16S rRNA methyltransferase B [Clostridium botulinum C str.
Stockholm]
Length = 443
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 132/247 (53%), Gaps = 44/247 (17%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ ++L +D++ G VLD+C+APG K THI+ +MN+TG ++A D + +++ +++
Sbjct: 235 VQDESAMLVAATMDIKEGSLVLDLCSAPGGKTTHISEIMNNTGKVMAFDIHENKLSLVKD 294
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP-MF 184
K+L +++I+ D+++ N E++ KE+ D +L+D PCSG G ++P +
Sbjct: 295 NAKRLGINNIECSKLDASKFN-------EKL---KETADAVLIDVPCSGLGIIRKKPEIK 344
Query: 185 YNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
Y N + +K NIQK++++ R+V K G L+Y TC+++ +EN
Sbjct: 345 YTKNM-----ESVKDIVNIQKEIMKNAARYV-----------KVGGTLLYSTCTINKKEN 388
Query: 245 EAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
E I W + PE V+ + M + + E++ V ++P N GF
Sbjct: 389 EQNIDWFIRNFPEY-TVEPIFYGEMDNIIYN----ENRTV------TILP---NKYMDGF 434
Query: 305 FICKLRK 311
FI KL++
Sbjct: 435 FIAKLKR 441
>gi|293401629|ref|ZP_06645771.1| NOL1/NOP2/sun family protein [Erysipelotrichaceae bacterium
5_2_54FAA]
gi|291304887|gb|EFE46134.1| NOL1/NOP2/sun family protein [Erysipelotrichaceae bacterium
5_2_54FAA]
Length = 442
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 85/261 (32%), Positives = 128/261 (49%), Gaps = 46/261 (17%)
Query: 69 LQNLPSILAGHY-------------LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIA 115
L N P+ LAG + LDVQ G VLDMCAAPG K T IA + +G L++
Sbjct: 71 LGNHPAHLAGLFYMQEPSASSAVEVLDVQEGDWVLDMCAAPGGKSTQIAAKLQHSGLLVS 130
Query: 116 LDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPC 175
+ R L +++L S + T+++ D E K FD++L+DAPC
Sbjct: 131 NEIEAKRAAVLMSNMERLGFSEC---------MITNARPD-ELAKEMGGWFDKVLVDAPC 180
Query: 176 SGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC 235
SG G A +++ + S A QK +L++ Y LK++GILVY
Sbjct: 181 SGEGMFKKHAKAMDDWSVEH-VASCAMRQKLILESAYE-----------TLKEEGILVYS 228
Query: 236 TCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPT 295
TC+ S+EENE V+ L H ++EL+ G G +++DL D ++R + P
Sbjct: 229 TCTYSMEENEEVVYEFLKHHDDMELLDCQVNFGRSGFSYRDL---DVTKVRR----IFPM 281
Query: 296 DRNTDTIGFFICKLRKKYGEA 316
D+ G F+ K+ KK+G+A
Sbjct: 282 DQGE---GHFVAKM-KKHGQA 298
>gi|253682518|ref|ZP_04863315.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum D str. 1873]
gi|253562230|gb|EES91682.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum D str. 1873]
Length = 443
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 132/247 (53%), Gaps = 44/247 (17%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ ++L +D++ G VLD+C+APG K THI+ +MN+TG ++A D + +++ +++
Sbjct: 235 VQDESAMLVAATMDIKEGSLVLDLCSAPGGKTTHISEIMNNTGKVMAFDIHENKLSLVKD 294
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP-MF 184
K+L +++I+ D+++ N E++ KE+ D +L+D PCSG G ++P +
Sbjct: 295 NAKRLGINNIECSKLDASKFN-------EKL---KETADAVLIDVPCSGLGIIRKKPEIK 344
Query: 185 YNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
Y N + +K NIQK++++ R+V K G L+Y TC+++ +EN
Sbjct: 345 YTKNM-----ESVKDIVNIQKEIMKNAARYV-----------KVGGTLLYSTCTINKKEN 388
Query: 245 EAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
E I W + PE V+ + M + + E++ V ++P N GF
Sbjct: 389 EQNIDWFIRNFPEY-TVEPIFYGEMDNIIYN----ENRTV------TILP---NKYMDGF 434
Query: 305 FICKLRK 311
FI KL++
Sbjct: 435 FIAKLKR 441
>gi|154342166|ref|XP_001567031.1| putative nucleolar protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134064360|emb|CAM42450.1| putative nucleolar protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 625
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/256 (33%), Positives = 125/256 (48%), Gaps = 52/256 (20%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
+LQ S L L Q ++VLDM AAPG K T+IA LM +TG L A D S+PR L
Sbjct: 311 MLQAAASFLPVMALAPQEHERVLDMSAAPGGKTTYIAQLMKNTGVLFANDVSEPRCKSLN 370
Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNA 187
+++L +++ YD T ER+ +FDR+LLDAPCSG G
Sbjct: 371 SNLQRLGVTNCIVTNYDGT--------GYERV---MRNFDRVLLDAPCSGTG-------- 411
Query: 188 NSFLNLDKKI---KSYANIQK--KLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVE 242
++ DK I K Y +IQ+ +L +A+ I + G +VY TCS VE
Sbjct: 412 --IISRDKSIKMGKQYEDIQRASQLQRALL-------LSAIDACRVAGYVVYSTCSFLVE 462
Query: 243 ENEAVIAWILHRHPEVELVQTLPQLGMKGLA-------HKDLEAEDQAVMQRFGPPLIPT 295
E+EA++ + L R +V++V+ G G H LE + +R+ P +
Sbjct: 463 EDEAIVDFALKRR-DVQVVEMGLPFGRPGFTKYRHHRYHDSLE-----LSRRYFPHVHNM 516
Query: 296 DRNTDTIGFFICKLRK 311
D GFF+CKL+K
Sbjct: 517 D------GFFVCKLKK 526
>gi|432908758|ref|XP_004078019.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
[Oryzias latipes]
Length = 758
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 93/293 (31%), Positives = 138/293 (47%), Gaps = 56/293 (19%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV ++ S+V V DSS+ + P LAGHY L Q G+
Sbjct: 350 LINRGVNLDPIGKWSKVGLVIYDSSVPVGAT-PEYLAGHYMLQGASSFLPVMALSPQEGE 408
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
VLDM +APG K T+IA LM +TG ++A D + R+ + I +L +++ YD +
Sbjct: 409 MVLDMSSAPGGKTTYIAQLMRNTGVIVANDANSERLKSVVGNIHRLGVTNTVVCNYDGRQ 468
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYANIQ 204
FDR+LLDAPCSG G + P + ++ ++S A++Q
Sbjct: 469 FPKVMG-----------GFDRVLLDAPCSGTGVIAKDPAVKTSKDEADI---LRS-AHLQ 513
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL 264
K+L+ + V+ G G +VYCTCS++VEENE V+ + L + V+LV T
Sbjct: 514 KELILSAIDSVNAESPSG-------GYVVYCTCSITVEENEWVVDYALKKR-NVKLVPTG 565
Query: 265 PQLGMKGLAHKDLEAEDQAVMQRFGPPL------IPTDRNTDTIGFFICKLRK 311
G +G + RF P L P N D GFF+ KL+K
Sbjct: 566 LDFGKEGFTN--------FKQFRFHPSLKLTRRFYPHSHNMD--GFFVAKLKK 608
>gi|191638611|ref|YP_001987777.1| RRNA methylase () [Lactobacillus casei BL23]
gi|385820326|ref|YP_005856713.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
casei LC2W]
gi|385823520|ref|YP_005859862.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
casei BD-II]
gi|190712913|emb|CAQ66919.1| RRNA methylase (Putative) [Lactobacillus casei BL23]
gi|327382653|gb|AEA54129.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
casei LC2W]
gi|327385847|gb|AEA57321.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
casei BD-II]
Length = 446
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/247 (35%), Positives = 124/247 (50%), Gaps = 38/247 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMN--DTGTLIALDKSKPRVTKL 126
+Q+ S+L LD+QPG VLD CAAPG K THIA ++ G + ALD +V +
Sbjct: 234 MQDESSMLVAPSLDIQPGDVVLDACAAPGGKTTHIAQYLDPKQGGQVTALDLHANKVRLI 293
Query: 127 EETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFY 185
+ K+L L+ I V D+ ++ T+ SFD+IL+DAPCSG G
Sbjct: 294 NKNAKRLGLTDRIHAQVLDARKVATT---------FPANSFDKILVDAPCSGLG----LI 340
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ K + A++Q+ L A+ V+ P LK G L Y TC++ EEN+
Sbjct: 341 RRKPEIKYTKTPEDPAHLQQIQL-AILNSVA-------PTLKIGGRLTYSTCTMVKEENQ 392
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
V+A L HPE E V ++P L K L HK A + +Q F P D +TD GFF
Sbjct: 393 DVVAQFLAAHPEFEQV-SVPTL--KPL-HK---AHNAPALQLF-----PDDYDTD--GFF 438
Query: 306 ICKLRKK 312
I L ++
Sbjct: 439 IASLIRR 445
>gi|282882115|ref|ZP_06290756.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus
lacrimalis 315-B]
gi|281298145|gb|EFA90600.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus
lacrimalis 315-B]
Length = 430
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 122/247 (49%), Gaps = 52/247 (21%)
Query: 70 QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEET 129
Q+ SI L+ + +LD+CAAPG K TH+ ++ +TG ++A DKS ++ +++
Sbjct: 233 QDFSSIKVSQILNPKKNSTILDLCAAPGGKSTHLGAILENTGQIVACDKSLYKLDLIKDN 292
Query: 130 IKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYN 186
K+L +S+I+ + D+++ N D E + FD L+DAPCS G ++P
Sbjct: 293 AKRLGVSNIKVSINDASKYNN----DFE------DKFDYCLVDAPCSAIGLYRKKPDIKW 342
Query: 187 ANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEA 246
S + IK+ A IQK ++ R+V KK G+L+Y TCSLS ENE
Sbjct: 343 NRSL----EDIKNLAQIQKNIINNAGRYV-----------KKGGVLIYSTCSLSYSENEG 387
Query: 247 VIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFI 306
VI L R+ +K L E + +++ L P D N D GF I
Sbjct: 388 VIKEFLDRNKN----------------YKILTIEGKDILK-----LFPFD-NYD--GFSI 423
Query: 307 CKLRKKY 313
CKL++ Y
Sbjct: 424 CKLQRLY 430
>gi|397499212|ref|XP_003820353.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 isoform 1
[Pan paniscus]
gi|410046166|ref|XP_003952139.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 [Pan
troglodytes]
gi|410211966|gb|JAA03202.1| NOP2 nucleolar protein homolog [Pan troglodytes]
gi|410259620|gb|JAA17776.1| NOP2 nucleolar protein homolog [Pan troglodytes]
gi|410300876|gb|JAA29038.1| NOP2 nucleolar protein homolog [Pan troglodytes]
gi|410348610|gb|JAA40909.1| NOP2 nucleolar protein homolog [Pan troglodytes]
Length = 812
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 95/294 (32%), Positives = 137/294 (46%), Gaps = 52/294 (17%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+ V DSS+ I P LAGHY L Q
Sbjct: 325 AQALINRGVNLDPLGKWSKTGLVVYDSSVPIGAT-PEYLAGHYMLQGASSMLPVMALAPQ 383
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDMC APG K +++A LM +TG ++A D + R+ + + +L +++ YD
Sbjct: 384 EHERILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYD 443
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANI 203
+ FDR+LLDAPCSG G + + N D+K I A++
Sbjct: 444 GRQFPKVVG-----------GFDRVLLDAPCSGTGV--ISKDPAVKTNKDEKDILRCAHL 490
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
QK+LL + V+ G G LVYCTCS++VEENE V+ + L + V LV T
Sbjct: 491 QKELLLSAIDSVNATSKTG-------GYLVYCTCSITVEENEWVVDYALKKR-NVRLVPT 542
Query: 264 LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
G +G + +RF P L T R N D GFFI K +K
Sbjct: 543 GLDFGQEGFT--------RFQERRFHPSLRSTRRFYPHTHNMD--GFFIAKFKK 586
>gi|385198061|ref|NP_001245238.1| putative ribosomal RNA methyltransferase NOP2 isoform 3 [Homo
sapiens]
gi|76779860|gb|AAI06073.1| NOP2 protein [Homo sapiens]
Length = 845
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 95/294 (32%), Positives = 137/294 (46%), Gaps = 52/294 (17%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+ V DSS+ I P LAGHY L Q
Sbjct: 358 AQALINRGVNLDPLGKWSKTGLVVYDSSVPIGAT-PEYLAGHYMLQGASSMLPVMALAPQ 416
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDMC APG K +++A LM +TG ++A D + R+ + + +L +++ YD
Sbjct: 417 EHERILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYD 476
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANI 203
+ FDR+LLDAPCSG G + + N D+K I A++
Sbjct: 477 GRQFPKVVG-----------GFDRVLLDAPCSGTGV--ISKDPAVKTNKDEKDILRCAHL 523
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
QK+LL + V+ G G LVYCTCS++VEENE V+ + L + V LV T
Sbjct: 524 QKELLLSAIDSVNATSKTG-------GYLVYCTCSITVEENEWVVDYALKKR-NVRLVPT 575
Query: 264 LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
G +G + +RF P L T R N D GFFI K +K
Sbjct: 576 GLDFGQEGFT--------RFRERRFHPSLRSTRRFYPHTHNMD--GFFIAKFKK 619
>gi|116495106|ref|YP_806840.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus casei ATCC 334]
gi|116105256|gb|ABJ70398.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus casei ATCC 334]
Length = 446
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/247 (35%), Positives = 124/247 (50%), Gaps = 38/247 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMN--DTGTLIALDKSKPRVTKL 126
+Q+ S+L LD+QPG VLD CAAPG K THIA ++ G + ALD +V +
Sbjct: 234 MQDESSMLVAPSLDIQPGDVVLDACAAPGGKTTHIAQYLDPKQGGQVTALDLHANKVRLI 293
Query: 127 EETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFY 185
+ K+L L+ I V D+ ++ T+ SFD+IL+DAPCSG G
Sbjct: 294 NKNAKRLGLTDRIHAQVLDARKVATT---------FPANSFDKILVDAPCSGLG----LI 340
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ K + A++Q+ L A+ V+ P LK G L Y TC++ EEN+
Sbjct: 341 RRKPEIKYTKTPEDPAHLQQIQL-AILNSVA-------PTLKIGGRLTYSTCTMVKEENQ 392
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
V+A L HPE E V ++P L K L HK A + +Q F P D +TD GFF
Sbjct: 393 DVVAQFLAAHPEFEQV-SVPTL--KPL-HK---AHNAPALQLF-----PDDYDTD--GFF 438
Query: 306 ICKLRKK 312
I L ++
Sbjct: 439 IASLIRR 445
>gi|417989898|ref|ZP_12630395.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
casei A2-362]
gi|417999358|ref|ZP_12639568.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
casei T71499]
gi|410536893|gb|EKQ11479.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
casei A2-362]
gi|410539378|gb|EKQ13911.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
casei T71499]
Length = 446
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/247 (35%), Positives = 123/247 (49%), Gaps = 38/247 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMN--DTGTLIALDKSKPRVTKL 126
+Q+ S+L LD+QPG VLD CAAPG K THIA ++ G + ALD +V +
Sbjct: 234 MQDESSMLVAPSLDIQPGDAVLDACAAPGGKTTHIAQYLDPKQGGQVTALDLHANKVRLI 293
Query: 127 EETIKKLQL-SSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFY 185
+ K+L L I V D+ ++ T+ SFD+IL+DAPCSG G
Sbjct: 294 NKNAKRLGLMDRIHAQVLDARKVATT---------FPANSFDKILVDAPCSGLG----LI 340
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ K + A++Q+ L A+ V+ P LK G L Y TC++ EEN+
Sbjct: 341 RRKPEIKYTKTPEDPAHLQQIQL-AILNSVA-------PTLKIGGRLTYSTCTMVKEENQ 392
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
V+A L HPE E V ++P L K L HK A + +Q F P D +TD GFF
Sbjct: 393 DVVAQFLAAHPEFEQV-SVPTL--KPL-HK---AHNAPALQLF-----PDDYDTD--GFF 438
Query: 306 ICKLRKK 312
I L ++
Sbjct: 439 IASLIRR 445
>gi|253741386|gb|EES98257.1| Nucleolar protein NOP2 [Giardia intestinalis ATCC 50581]
Length = 497
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 126/249 (50%), Gaps = 32/249 (12%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
++Q+ S L L+ +PG+++LDM AAPG K TH+ LM D+G ++A D ++ R+ L+
Sbjct: 276 MIQDAASFLPPMALNPKPGERILDMSAAPGGKTTHLGALMQDSGMILANDMNRDRIPALQ 335
Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG--QRPMFY 185
+ ++ ++ D+ + + +FDR+LLDAPCSG G +
Sbjct: 336 ANLARMGVTCAVISCSDARELAQCTG-----------NFDRVLLDAPCSGLGVVSKDASI 384
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
AN + I +++QK+LL + F L P L + Y TCS+++ ENE
Sbjct: 385 KANRTF---EDIHRLSHLQKELLN--HAFDLLAKHPSNPRL-----VCYSTCSVTLSENE 434
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQ--RFGPPLIPTDRNTDTIG 303
AVI +ILH+ VE+V G G+ + + ++ + RF P + +T G
Sbjct: 435 AVIDYILHKR-NVEVVDLPFSFGKPGITKFNGMSYHPSIQKARRFYPHI------HNTHG 487
Query: 304 FFICKLRKK 312
FFIC LR K
Sbjct: 488 FFICLLRLK 496
>gi|189529666|ref|XP_001922354.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 [Danio
rerio]
Length = 739
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 96/296 (32%), Positives = 138/296 (46%), Gaps = 56/296 (18%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+V V DSS+ I P LAGHY L Q
Sbjct: 323 AQALINRGVNLDPLGKWSKVGLVIYDSSVPIGAT-PEYLAGHYMLQGASSFLPVMALSPQ 381
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
G+ VLDM AAPG K T++A LM +TG ++A D + R+ + I +L +++ YD
Sbjct: 382 EGESVLDMSAAPGGKTTYMAQLMRNTGMIVANDANVDRLKSVVGNIHRLGVTNAVICNYD 441
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYA 201
+ FDR+LLDAPCSG G + P ++ ++S A
Sbjct: 442 GRQFPKVMG-----------GFDRVLLDAPCSGTGVISKDPAVKTGKDEADI---LRS-A 486
Query: 202 NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
++QK+L+ + V+ G G LVYCTCS+ VEENE V+ + L + V+LV
Sbjct: 487 HLQKELILSAIDSVNADSQTG-------GYLVYCTCSIMVEENEWVVDYALKKR-NVKLV 538
Query: 262 QTLPQLGMKGLAHKDLEAEDQAVMQRFGPPL------IPTDRNTDTIGFFICKLRK 311
T G +G + +RF P L P N D GFF+ KL+K
Sbjct: 539 PTGLDFGKEGFT--------RFKEKRFHPSLKLSRRFYPHSHNMD--GFFVAKLKK 584
>gi|14590712|ref|NP_142782.1| fmu protein [Pyrococcus horikoshii OT3]
gi|186972907|pdb|2YXL|A Chain A, Crystal Structure Of Ph0851
gi|3257262|dbj|BAA29945.1| 450aa long hypothetical fmu protein [Pyrococcus horikoshii OT3]
Length = 450
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 108/201 (53%), Gaps = 21/201 (10%)
Query: 61 ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSK 120
A + I+Q S +A LD +PG+ V+D+ AAPG K TH+A LM + G + A D K
Sbjct: 235 AFNEGKIIVQEEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDK 294
Query: 121 PRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQ 180
R+ +L++ +K++ + ++ V D+ + + +I + +E D++LLDAPC+ G
Sbjct: 295 MRMKRLKDFVKRMGIKIVKPLVKDARK---APEI------IGEEVADKVLLDAPCTSSGT 345
Query: 181 RPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLS 240
L D KI + +Q++LL++ R L+K G L+Y TCS+
Sbjct: 346 IGKNPELRWRLRED-KINEMSQLQRELLESAAR-----------LVKPGGRLLYTTCSIF 393
Query: 241 VEENEAVIAWILHRHPEVELV 261
EENE I W L+ HPE +LV
Sbjct: 394 KEENEKNIRWFLNVHPEFKLV 414
>gi|402839079|ref|ZP_10887572.1| ribosomal RNA small subunit methyltransferase B [Eubacteriaceae
bacterium OBRC8]
gi|402270618|gb|EJU19876.1| ribosomal RNA small subunit methyltransferase B [Eubacteriaceae
bacterium OBRC8]
Length = 436
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 120/245 (48%), Gaps = 55/245 (22%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+ A L +P + VLD+CAAPG K +A LM + G++ +LD S ++ LEE
Sbjct: 241 VQDYASMKAVLALSPEPFENVLDICAAPGGKSVFMAELMGNKGSITSLDISSKKLKLLEE 300
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG--QRPMFYN 186
K+L ++ I+T+V D+T + K FD++L D PCSG G +R
Sbjct: 301 QAKRLGINIIKTYVNDATIYKSE----------YKNKFDKVLCDVPCSGIGILRRKPEIR 350
Query: 187 ANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEA 246
F + I++ ++QK+ L+ SL+ LKKDGILVY TC+L EEN
Sbjct: 351 YKKF----EDIQNIIDVQKQTLKN----TSLY-------LKKDGILVYSTCTLGKEENSD 395
Query: 247 VIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFI 306
+I+ L ++ EL+ + + P + TD GFF+
Sbjct: 396 IISEFLSKNINFELI----------------------FQKEYYPHIDSTD------GFFV 427
Query: 307 CKLRK 311
CK+RK
Sbjct: 428 CKMRK 432
>gi|257877736|ref|ZP_05657389.1| sun protein [Enterococcus casseliflavus EC20]
gi|257811902|gb|EEV40722.1| sun protein [Enterococcus casseliflavus EC20]
Length = 452
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/250 (33%), Positives = 122/250 (48%), Gaps = 44/250 (17%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMN--DTGTLIALDKSKPRVTKL 126
+Q+ S+L L V +VLD CAAPG K THIA ++ + G + ALD +V +
Sbjct: 241 IQDESSMLVAPVLQVARDHQVLDACAAPGGKTTHIAAFLSAAEGGKVTALDIHAHKVKLI 300
Query: 127 EETIKKLQLSSI-QTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP 182
++ ++L + ++ +T V D+ + E FDRIL+DAPCSG G ++P
Sbjct: 301 QQNAQRLGVEAVVETRVMDARETAQT---------FAPEQFDRILVDAPCSGLGLMRRKP 351
Query: 183 MFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVE 242
+ + + IQ+++L++ P LKK GI+VY TC++ E
Sbjct: 352 DI----KYSKTEADFQRLPQIQREILES-----------AAPTLKKSGIMVYSTCTILAE 396
Query: 243 ENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTI 302
EN+ V+A L HPE E +P LA L AE +Q + P D TD
Sbjct: 397 ENQQVVAAFLADHPEFE---QMP------LAVGPLAAE---AVQEDMLTIYPQDFMTD-- 442
Query: 303 GFFICKLRKK 312
GFFI LRKK
Sbjct: 443 GFFISCLRKK 452
>gi|212541847|ref|XP_002151078.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Talaromyces marneffei ATCC
18224]
gi|210065985|gb|EEA20078.1| nucleolar RNA methyltransferase (Nop2), putative [Talaromyces
marneffei ATCC 18224]
Length = 764
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 92/297 (30%), Positives = 139/297 (46%), Gaps = 50/297 (16%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV ++ S+V +S++ L P LAGHY L Q +
Sbjct: 340 LINRGVVLQPVGKWSKVGLQVFESAV-PLGATPEYLAGHYILQAASSFLPVMALAPQENE 398
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM +APG K T+I+ LM +TG ++A D SK R L I +L + Y+
Sbjct: 399 RVLDMASAPGGKTTYISALMRNTGIVVANDASKVRTKGLIGNIHRLGCKNTIVCNYNGQ- 457
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY---ANIQ 204
E FDR+LLDAPC+G G + + + +K + + ++Q
Sbjct: 458 ---------EAFPKILGGFDRVLLDAPCTGTG----VISKDPSVKTNKTERDFLAIPHMQ 504
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT- 263
++LL A G G +VY TCS++VEENE V+ ++L + P V++V T
Sbjct: 505 RQLLLAAIDSTDHHSKTG-------GYIVYSTCSVTVEENEQVVQYVLRKRPNVKIVDTG 557
Query: 264 LPQLGMKGLAH---KDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKKYGEAP 317
L G +G K + E + +R+ P N D GFF+CKL KK G +P
Sbjct: 558 LGSFGSEGFTSYMGKKFD-EKMTLTRRY----FPHRENVD--GFFVCKL-KKTGPSP 606
>gi|125973090|ref|YP_001037000.1| sun protein [Clostridium thermocellum ATCC 27405]
gi|256004593|ref|ZP_05429571.1| sun protein [Clostridium thermocellum DSM 2360]
gi|281417285|ref|ZP_06248305.1| sun protein [Clostridium thermocellum JW20]
gi|385779009|ref|YP_005688174.1| sun protein [Clostridium thermocellum DSM 1313]
gi|419721504|ref|ZP_14248667.1| sun protein [Clostridium thermocellum AD2]
gi|419725128|ref|ZP_14252181.1| sun protein [Clostridium thermocellum YS]
gi|125713315|gb|ABN51807.1| sun protein [Clostridium thermocellum ATCC 27405]
gi|255991465|gb|EEU01569.1| sun protein [Clostridium thermocellum DSM 2360]
gi|281408687|gb|EFB38945.1| sun protein [Clostridium thermocellum JW20]
gi|316940689|gb|ADU74723.1| sun protein [Clostridium thermocellum DSM 1313]
gi|380771449|gb|EIC05316.1| sun protein [Clostridium thermocellum YS]
gi|380782444|gb|EIC12079.1| sun protein [Clostridium thermocellum AD2]
Length = 455
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 80/252 (31%), Positives = 132/252 (52%), Gaps = 49/252 (19%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L LD +PG+ +LD+C+APG K THIA +M + GT+I+ D + ++ +E+
Sbjct: 243 VQDESSMLVAKVLDPKPGETILDVCSAPGGKSTHIAQIMKNRGTVISRDIHEHKIKLIEQ 302
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP-MF 184
++L L I+T V+D+ ++ KL E DR+L+DAPC+GFG ++P +
Sbjct: 303 AKERLGLEIIKTEVFDAAVLDG---------KLI-EKIDRVLVDAPCTGFGIIRRKPDIK 352
Query: 185 YNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
++ NS DK ++Q K+L ++V K G+LVY TC+L EEN
Sbjct: 353 WSKNS---EDK--AEIVSLQHKILSTASKYV-----------KDGGVLVYSTCTLEPEEN 396
Query: 245 EAVIAWILHRHPEV---ELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDT 301
E + + + + ++ + LP K E+ + +Q L P N D
Sbjct: 397 EKAVERFIEENKDFYLEDITEFLPDALRK-------ESAGKGYIQ-----LYP---NIDG 441
Query: 302 I-GFFICKLRKK 312
I GFFI ++RK+
Sbjct: 442 IDGFFIARMRKR 453
>gi|17536757|ref|NP_493742.1| Protein NOL-1 [Caenorhabditis elegans]
gi|351050956|emb|CCD73642.1| Protein NOL-1 [Caenorhabditis elegans]
Length = 664
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 97/296 (32%), Positives = 138/296 (46%), Gaps = 55/296 (18%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A +++ RG+ V+ ++V V DS + + P LAGHY L Q
Sbjct: 246 AKNLINRGMNVDPAADWTKVGLVVYDSQVPVGA-TPEYLAGHYMIQGLNSLLPVMALAPQ 304
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
PG +VLDMC+APG K +HIA LM ++G L A D + R + + +L V +
Sbjct: 305 PGDRVLDMCSAPGGKTSHIAALMKNSGVLFANDANFTRCRAIIGNLHRL-------GVNN 357
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQ 204
+ N + E K++ FDRILLDAPCSG G + + S K K ++Q
Sbjct: 358 TVVCNLGGE---EFSKIRPNGFDRILLDAPCSGTG---VIWKDQSV----KTSKDSQDVQ 407
Query: 205 KKLLQAVYRFVSLFDW--QGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQ 262
++ +S D P G LVY TCS+ VEENEAV+ ++L R ELV
Sbjct: 408 RRHTMQRQLILSALDSLDANSP---NGGYLVYSTCSVLVEENEAVVNFLLERR-HCELVP 463
Query: 263 TLPQLGMKGLAH-KDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
T +G+ G +D RF P L T R N D GF++ K++K
Sbjct: 464 TGLSIGVDGYTRFRDY---------RFHPSLSMTKRYYPHVHNID--GFYVAKIKK 508
>gi|373452623|ref|ZP_09544535.1| NOL1/NOP2/sun family putative RNA methylase [Eubacterium sp.
3_1_31]
gi|371965873|gb|EHO83367.1| NOL1/NOP2/sun family putative RNA methylase [Eubacterium sp.
3_1_31]
Length = 442
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 85/261 (32%), Positives = 128/261 (49%), Gaps = 46/261 (17%)
Query: 69 LQNLPSILAGHY-------------LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIA 115
L N P+ LAG + LDVQ G VLDMCAAPG K T IA + +G L++
Sbjct: 71 LGNHPAHLAGLFYMQEPSASSAVEVLDVQEGDWVLDMCAAPGGKSTQIAAKLQHSGLLVS 130
Query: 116 LDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPC 175
+ R L +++L S + T+++ D E K FD++L+DAPC
Sbjct: 131 NEIEAKRAAVLMSNMERLGFSEC---------MITNARPD-ELAKEMGGWFDKVLVDAPC 180
Query: 176 SGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC 235
SG G A +++ + S A QK +L++ Y LK++GILVY
Sbjct: 181 SGEGMFKKHAKAMDDWSVEH-VASCAMRQKLILESAYE-----------TLKEEGILVYS 228
Query: 236 TCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPT 295
TC+ S+EENE V+ L H ++EL+ G G +++DL D ++R + P
Sbjct: 229 TCTYSMEENEEVVYEFLKHHDDMELLDCQVNFGRSGFSYRDL---DVTKVRR----IFPM 281
Query: 296 DRNTDTIGFFICKLRKKYGEA 316
D+ G F+ K+ KK+G+A
Sbjct: 282 DQGE---GHFVAKM-KKHGQA 298
>gi|405955425|gb|EKC22548.1| Putative ribosomal RNA methyltransferase NOP2 [Crassostrea gigas]
Length = 651
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/294 (31%), Positives = 139/294 (47%), Gaps = 52/294 (17%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+V V DS + L P LAGHY L Q
Sbjct: 289 AQALINRGVNLDPIGKWSKVGLVVYDSQV-PLGATPEYLAGHYIIQGGSSFLPVMALAPQ 347
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDM +APG K THIA LM +TG + A D +K R + + ++ +++ YD
Sbjct: 348 ENERILDMSSAPGGKTTHIASLMKNTGVIFANDANKDRAKAIVGNVHRMGITNTVICNYD 407
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANI 203
+ + FDR+LLDAPCSG G + + +N D+K I+ +++
Sbjct: 408 GRKFPSVMH-----------GFDRVLLDAPCSGTG--VIAKDTEVKMNKDEKDIQRCSHL 454
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
Q++LL A G G +VY TCS+ V+ENE+VI + L++ V+LV T
Sbjct: 455 QRELLLAAIDCCDAKSSTG-------GYIVYSTCSILVDENESVIEYALNKR-NVKLVPT 506
Query: 264 LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
G +G + + RF P + T R N D GFF+ KL+K
Sbjct: 507 GLDFGKEGYVNFE--------RHRFHPNMKLTRRFYPHTHNLD--GFFVAKLKK 550
>gi|397905926|ref|ZP_10506759.1| Ribosomal RNA small subunit methyltransferase B [Caloramator
australicus RC3]
gi|397161029|emb|CCJ34094.1| Ribosomal RNA small subunit methyltransferase B [Caloramator
australicus RC3]
Length = 314
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 129/248 (52%), Gaps = 37/248 (14%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
LQNL S++ LD + G+KVLD+ AAPG+K T +A +M + G ++A + K R +L+
Sbjct: 99 LQNLSSMIPPIILDPKEGEKVLDVAAAPGSKTTQMAAMMKNMGFILANEADKIRAERLKY 158
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG----QRPMF 184
+K +Q R+ +I E E FD++LLD PCSG G + P
Sbjct: 159 NLK------LQGVEIAEVRVGKGEKIGEE----YPEFFDKVLLDVPCSGEGIISIKDPKT 208
Query: 185 YNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
Y S K+++ + +QKKL ++ Y+ LKK GI+VY TC+L+ +EN
Sbjct: 209 YRGWSL----KEVERLSRLQKKLFESAYK-----------ALKKGGIMVYSTCTLNRKEN 253
Query: 245 EAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
E +I W L+ +++++ + +L L D+ D+ + +IP N GF
Sbjct: 254 EEIIDWALNNF-DIKIM-NIDRLDNNFLNGIDIGLSDEV---KKCIRVIP---NEVYEGF 305
Query: 305 FICKLRKK 312
F+CK++KK
Sbjct: 306 FVCKIKKK 313
>gi|253580147|ref|ZP_04857414.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251848666|gb|EES76629.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 450
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 122/249 (48%), Gaps = 44/249 (17%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q++ S+L D Q G V+DMCAAPG K H+A M D GT+ A D S+ +V +EE
Sbjct: 241 VQDVSSMLVAEIADPQKGDYVIDMCAAPGGKSLHVADKMGDYGTVDARDISQYKVDMIEE 300
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGF---GQRPMFY 185
I + ++Q HV D+T + S++ D +L D PCSG+ G++P
Sbjct: 301 NIHRTDCINVQAHVMDATVFDVDSEL----------KADVVLADVPCSGYGVIGKKPEI- 349
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ +K + +Q+ +L +V K G+LV+ TC+++ EENE
Sbjct: 350 ---KYRVTAQKQEEIVILQRTILDNAAEYV-----------KPGGVLVFSTCTIAKEENE 395
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAV--MQRFGPPLIPTDRNTDTIG 303
+ W ++ HP +L P L ++L +E A+ +Q L+P TD G
Sbjct: 396 ENMLWFMNNHP-FKLESIDPYLP------EELHSETTALGYLQ-----LLPGVHKTD--G 441
Query: 304 FFICKLRKK 312
FFI K R+K
Sbjct: 442 FFIAKFRRK 450
>gi|410963633|ref|XP_003988368.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 [Felis
catus]
Length = 820
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 136/294 (46%), Gaps = 52/294 (17%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+ V DSS+ I P LAGHY L Q
Sbjct: 330 AQALINRGVNLDPLGKWSKTGLVVYDSSVPIGAT-PEYLAGHYMLQGASSMLPVMALAPQ 388
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDMC APG K ++IA LM +TG ++A D + R+ + + +L +++ YD
Sbjct: 389 EHERILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYD 448
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANI 203
+ FDR+LLDAPCSG G + + N D+K I A++
Sbjct: 449 GRQFPKVVG-----------GFDRVLLDAPCSGTGV--ISKDPAVKTNKDEKDILRCAHL 495
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
QK+LL + V+ G G LVYCTCS+ VEENE V+ + L + V LV T
Sbjct: 496 QKELLLSAIDSVNATSKTG-------GYLVYCTCSIMVEENEWVVDYALKKR-NVRLVPT 547
Query: 264 LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
G +G + +RF P L T R N D GFFI K +K
Sbjct: 548 GLDFGQEGFT--------RFRERRFHPTLRSTRRFYPHTHNMD--GFFIAKFKK 591
>gi|428223826|ref|YP_007107923.1| sun protein [Geitlerinema sp. PCC 7407]
gi|427983727|gb|AFY64871.1| sun protein [Geitlerinema sp. PCC 7407]
Length = 446
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 88/295 (29%), Positives = 130/295 (44%), Gaps = 62/295 (21%)
Query: 42 LFRGVAVEITNVLSQ-------VPNVA----LDSSMGILQNLPSILAGHY---------- 80
L R + L+Q VP V L S G + LP G +
Sbjct: 187 LLRSTPEAVQTALAQAGIVAEPVPGVPQALRLQGSPGTISELPGFKEGWWTVQDSSAQLV 246
Query: 81 ---LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS 137
LD +PG+ V+D CAAPG K TH+A LM D GT+ A D+ R+ K+ + +++L L S
Sbjct: 247 SQVLDPRPGETVIDACAAPGGKTTHLAELMGDRGTIWACDRYPSRLRKVTQNLQRLGLQS 306
Query: 138 IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKI 197
++ DS D+ + + Q DR+L+DAPCSG G +A +
Sbjct: 307 VRLQAGDSR--------DLSQFRQQA---DRVLVDAPCSGLGTLNRHADAR-WRQTPDTA 354
Query: 198 KSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPE 257
+ A +Q+++L +V K G LVY TC+L+ ENE+V+ L +PE
Sbjct: 355 RELAALQQEILAEAATWV-----------KPQGHLVYATCTLNPLENESVVTAFLQAYPE 403
Query: 258 VELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKK 312
+ LP+ G+ G A+ L P D GFFI LR++
Sbjct: 404 WAIA-PLPE-GLPG-----------AIAPEGWLKLWPHLHRMD--GFFIAALRRQ 443
>gi|366089306|ref|ZP_09455779.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus acidipiscis
KCTC 13900]
Length = 448
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 122/248 (49%), Gaps = 42/248 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ + L+ +++QP +VLDMCAAPG K T IA +ND G + ALD K ++ ++
Sbjct: 238 VQDESASLSVESMNIQPDDQVLDMCAAPGGKTTQIAEHLNDNGHVEALDIHKNKLRLIQR 297
Query: 129 TIKKLQLS-SIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMF 184
+ ++ LS S+ T D+ + K +E+FD++L+DAPCSG G ++P
Sbjct: 298 NVDRMHLSESVTTRALDARK---------SPEKYSRETFDKVLVDAPCSGLGLLRRKPEI 348
Query: 185 YNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
S + K A +Q +LQA PL+ K G L Y TC++ EN
Sbjct: 349 KYEKSLADTTK----LAQVQLSILQA-----------AAPLVAKGGQLTYSTCTIISTEN 393
Query: 245 EAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
+AV+ L +P+ V+T + +K D+ Q + P D ++D GF
Sbjct: 394 QAVVDKFLTANPDFVQVKTTTKYHLK----------DE--RQSLSLTIYPDDYDSD--GF 439
Query: 305 FICKLRKK 312
FI L K+
Sbjct: 440 FIATLFKQ 447
>gi|239631985|ref|ZP_04675016.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|301066670|ref|YP_003788693.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus casei str.
Zhang]
gi|417980353|ref|ZP_12621033.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
casei 12A]
gi|417983642|ref|ZP_12624278.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
casei 21/1]
gi|239526450|gb|EEQ65451.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|300439077|gb|ADK18843.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus casei str.
Zhang]
gi|410524676|gb|EKP99583.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
casei 12A]
gi|410527911|gb|EKQ02773.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
casei 21/1]
Length = 446
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 88/247 (35%), Positives = 123/247 (49%), Gaps = 38/247 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMN--DTGTLIALDKSKPRVTKL 126
+Q+ S+L LD+QPG VLD CAAPG K THIA ++ G + ALD +V +
Sbjct: 234 MQDESSMLVAPSLDIQPGDVVLDACAAPGGKTTHIAQYLDPKQGGQVTALDLHANKVRLI 293
Query: 127 EETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFY 185
+ K+L L+ I V D+ ++ T+ SFD+IL+DAPCSG G
Sbjct: 294 NKNAKRLGLTDRIHAQVLDARKVATT---------FSANSFDKILVDAPCSGLG----LI 340
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ K + A++Q+ L A+ V+ P LK G L Y TC++ EEN+
Sbjct: 341 RRKPEIKYTKTPEDPAHLQQIQL-AILNSVA-------PTLKIGGRLTYSTCTMVKEENQ 392
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
V+A L HPE E V ++P L K L HK A +Q F P D +TD GFF
Sbjct: 393 DVVAQFLAAHPEFEQV-SVPTL--KPL-HK---AHSAPALQLF-----PDDYDTD--GFF 438
Query: 306 ICKLRKK 312
I L ++
Sbjct: 439 IASLIRR 445
>gi|76150623|ref|NP_006161.2| putative ribosomal RNA methyltransferase NOP2 isoform 1 [Homo
sapiens]
gi|76150625|ref|NP_001028886.1| putative ribosomal RNA methyltransferase NOP2 isoform 1 [Homo
sapiens]
gi|112180609|gb|AAH65257.1| NOP2 nucleolar protein homolog (yeast) [Homo sapiens]
gi|193786365|dbj|BAG51648.1| unnamed protein product [Homo sapiens]
Length = 808
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 95/294 (32%), Positives = 137/294 (46%), Gaps = 52/294 (17%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+ V DSS+ I P LAGHY L Q
Sbjct: 321 AQALINRGVNLDPLGKWSKTGLVVYDSSVPIGAT-PEYLAGHYMLQGASSMLPVMALAPQ 379
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDMC APG K +++A LM +TG ++A D + R+ + + +L +++ YD
Sbjct: 380 EHERILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYD 439
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANI 203
+ FDR+LLDAPCSG G + + N D+K I A++
Sbjct: 440 GRQFPKVVG-----------GFDRVLLDAPCSGTGV--ISKDPAVKTNKDEKDILRCAHL 486
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
QK+LL + V+ G G LVYCTCS++VEENE V+ + L + V LV T
Sbjct: 487 QKELLLSAIDSVNATSKTG-------GYLVYCTCSITVEENEWVVDYALKKR-NVRLVPT 538
Query: 264 LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
G +G + +RF P L T R N D GFFI K +K
Sbjct: 539 GLDFGQEGFT--------RFRERRFHPSLRSTRRFYPHTHNMD--GFFIAKFKK 582
>gi|354595948|ref|ZP_09013965.1| Ribosomal RNA small subunit methyltransferase B [Brenneria sp.
EniD312]
gi|353673883|gb|EHD19916.1| Ribosomal RNA small subunit methyltransferase B [Brenneria sp.
EniD312]
Length = 429
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/237 (33%), Positives = 114/237 (48%), Gaps = 50/237 (21%)
Query: 79 HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSI 138
H+LD G+ +LD+CAAPG K THI L ++A+D + R++++ E +++LQL +
Sbjct: 240 HWLDPHNGETILDLCAAPGGKTTHI-LEAAPQSQVLAVDIDESRLSRIRENLQRLQLHA- 297
Query: 139 QTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDK 195
Q + D + + SQ +FDRILLDAPCS G + P +L D
Sbjct: 298 QVVLGDGRQPESWSQ---------GRTFDRILLDAPCSATGVVRRHPDI----KWLRRDS 344
Query: 196 KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRH 255
I A +QK++L+AV+ P LK G LVY TCS+ EEN+ +A L RH
Sbjct: 345 DIAELALLQKEILEAVW-----------PYLKPGGTLVYATCSIMPEENQQQVAGFLERH 393
Query: 256 PEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKK 312
+ LV T QR G +P+ + D GFF KL K
Sbjct: 394 ADATLVGT-------------------GSPQRPGIQKLPSPDDGD--GFFYAKLVKN 429
>gi|225865846|ref|YP_002751224.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
03BB102]
gi|225787241|gb|ACO27458.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
03BB102]
Length = 444
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 119/245 (48%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G +LD CAAPG K THIA + TG +++LD +V +++
Sbjct: 232 IQDESSMLIARALEPDEGDVILDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQ 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
++L L +++T D+ ++ E+FD+IL+DAPCSGFG + +
Sbjct: 292 QAERLGLENVETKALDARKVQEH---------FANETFDKILVDAPCSGFG--VIRRKPD 340
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 341 IKLGKDKGDSERLSMIQFAILEKI-----------APLLKQGGRLVYSTCTIEKIENEQV 389
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E T+ + + L+ E + Q + F T GF+I
Sbjct: 390 IERFLQEHPEFEWDTTIKERMPEKLSPYMDEGQVQILPHYFA-----------TDGFYIA 438
Query: 308 KLRKK 312
LRKK
Sbjct: 439 CLRKK 443
>gi|448821134|ref|YP_007414296.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus plantarum
ZJ316]
gi|448274631|gb|AGE39150.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus plantarum
ZJ316]
Length = 447
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/256 (33%), Positives = 129/256 (50%), Gaps = 40/256 (15%)
Query: 61 ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMN--DTGTLIALDK 118
A+ M I+Q+ + L L++QP +VLD CAAPG K T IA ++ GT++ALD
Sbjct: 228 AMRYGMFIVQDESAQLVVPALNLQPSDRVLDACAAPGGKTTQIAASLDAEQGGTVVALDI 287
Query: 119 SKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ--KESFDRILLDAPCS 176
+V + + ++ HV D ++++D +++ Q ESFDRIL+DAPCS
Sbjct: 288 HANKVKLIGQNAARM-------HVADRVE---ATELDARKVETQFNAESFDRILVDAPCS 337
Query: 177 GFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT 236
G G + +K+++ N+Q+ L A+ V+ P LKK GI+ Y T
Sbjct: 338 GLG----LMRRKPEIRYEKQLQDSLNLQRIQL-AILTAVA-------PTLKKGGIMTYST 385
Query: 237 CSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTD 296
C++ +EN+ VI L HP+ EL QT P +DL+ + + P D
Sbjct: 386 CTILQQENQDVITKFLADHPDFEL-QTTP-------TERDLKTDRTEKTL----SIYPDD 433
Query: 297 RNTDTIGFFICKLRKK 312
+D GFFI LRKK
Sbjct: 434 YLSD--GFFIACLRKK 447
>gi|149712409|ref|XP_001496238.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 [Equus
caballus]
Length = 810
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 135/296 (45%), Gaps = 56/296 (18%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+ V DSS+ I P LAGHY L Q
Sbjct: 322 AQALINRGVNLDPLGKWSKTGLVVYDSSVPIGAT-PEYLAGHYMLQGASSMLPVMALAPQ 380
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
++VLDMC APG K ++IA LM +TG ++A D + R+ + + +L +++ YD
Sbjct: 381 EHERVLDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIVSHYD 440
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY---A 201
+ FDR+LLDAPCSG G + + + +K K A
Sbjct: 441 GRQFPKVVG-----------GFDRVLLDAPCSGTG----IISKDPAVKTNKDEKDVLRCA 485
Query: 202 NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
++QK+LL + V+ G G LVYCTCS+ VEENE V+ + L + V LV
Sbjct: 486 HLQKELLLSAIDSVNATSKTG-------GYLVYCTCSIMVEENEWVVDYALKKR-NVRLV 537
Query: 262 QTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
T G +G + +RF P L T R N D GFFI K +K
Sbjct: 538 PTGLDFGQEGFT--------RFRERRFHPTLRSTRRFYPHTHNMD--GFFIAKFKK 583
>gi|384252054|gb|EIE25531.1| NOL1/NOP2/sun family putative RNA met [Coccomyxa subellipsoidea
C-169]
Length = 461
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 93/297 (31%), Positives = 143/297 (48%), Gaps = 56/297 (18%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+V V +S++ + P +AGHY L Q
Sbjct: 122 AAALINRGVNLDPIGKWSKVGLVVYESNVPVGAT-PEYMAGHYMLQGASSFLPVMALAPQ 180
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
G++VLDM AAPG K T+IA LM ++G + A + + R+ ++ ++++ +++ YD
Sbjct: 181 EGEQVLDMAAAPGGKTTYIAALMRNSGIVFANEVNPLRLKSIQGNLQRMGVTNTIVSNYD 240
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYA 201
D+ +M + S DR LLDAPCSG G + P S +I A
Sbjct: 241 GR--------DLPKM-MGTNSVDRALLDAPCSGTGVVSKDPTVKANKS----QAEIWKCA 287
Query: 202 NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
++QK+LL A V G G +VY TCS+ VEENE V+ ++L R V++V
Sbjct: 288 HLQKQLLLAAIDLVDAGSKTG-------GYIVYSTCSIMVEENENVVNYVL-RKRHVKVV 339
Query: 262 QTLPQLGMKG-LAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
T G G + +++ RF P L + R N D GFF+CKL+K
Sbjct: 340 PTGLDFGRPGYMRYREF---------RFHPSLAESRRFYPHVHNLD--GFFVCKLKK 385
>gi|374607065|ref|ZP_09679871.1| 16S rRNA methyltransferase B [Paenibacillus dendritiformis C454]
gi|374387337|gb|EHQ58853.1| 16S rRNA methyltransferase B [Paenibacillus dendritiformis C454]
Length = 445
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 119/253 (47%), Gaps = 42/253 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L +PG +VLD CAAPG K THIA M D G + A D +V +EE
Sbjct: 222 VQDESSMLVVEALRPEPGMRVLDCCAAPGGKSTHIAERMGDMGEVTANDIHAHKVALIEE 281
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
+L L+S++ D+ + + L + SFD +LLDAPC+GFG ++P
Sbjct: 282 QAARLGLTSMRVMSVDAAELGQA---------LPQASFDVVLLDAPCTGFGVIRRKPDI- 331
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ ++ + + A++Q++LL R V + G LVY TC++ EEN
Sbjct: 332 ---KWAKREEDVAAIASLQERLLTEAARMV-----------RPGGRLVYSTCTVEPEENG 377
Query: 246 AVIAWILHRHP----EVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDT 301
+ L R P + LPQ + L ++Q ++P D +D
Sbjct: 378 DAVRRFLERTPGWTLDASWTSALPQNALDAA----LRRSPAGMLQ-----VLPQDAGSD- 427
Query: 302 IGFFICKLRKKYG 314
GFFI L++ G
Sbjct: 428 -GFFIACLQRADG 439
>gi|419648601|ref|ZP_14179936.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
LMG 9217]
gi|380626191|gb|EIB44683.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
LMG 9217]
Length = 292
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 89/280 (31%), Positives = 137/280 (48%), Gaps = 44/280 (15%)
Query: 32 LSIYCYALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLD 91
++ YCY D + + LS + A + + +QN S L L+V+ GQ VLD
Sbjct: 55 INAYCYLFDAKDKAI-------LSSMK--AFNEAYFYIQNYSSYLCALNLEVKAGQSVLD 105
Query: 92 MCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTS 151
MCAAPG K ++A M +TG L + S+ R L++ +K +++ + + D I
Sbjct: 106 MCAAPGGKSINLANFMQNTGYLACNEMSRDRFFILQKNLKNYGVNA-KVFMKDGKNIGNL 164
Query: 152 SQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAV 211
+ FD+ILLDAPCS F + F S+ K+IK+ A IQKKLL +
Sbjct: 165 CPL----------KFDKILLDAPCSTFA-KIGFDLEKSY----KEIKNIAKIQKKLLHS- 208
Query: 212 YRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKG 271
+ LK G LVY TC+ + EENE VI L ++EL+ + ++
Sbjct: 209 ----------ALKALKIGGELVYSTCTFTKEENEEVIENALKSEFKLELL----DIDLEN 254
Query: 272 LAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
+ K ++E+ A + + ++P+ D GFFI KLRK
Sbjct: 255 IEAKAGQSEEFAEISK-CRRILPS---LDYDGFFIAKLRK 290
>gi|422328107|ref|ZP_16409134.1| NOL1/NOP2/sun family putative RNA methylase [Erysipelotrichaceae
bacterium 6_1_45]
gi|371661890|gb|EHO27108.1| NOL1/NOP2/sun family putative RNA methylase [Erysipelotrichaceae
bacterium 6_1_45]
Length = 442
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/258 (32%), Positives = 122/258 (47%), Gaps = 49/258 (18%)
Query: 69 LQNLPSILAGHY-------------LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIA 115
L N P+ LAG + LDVQ VLDMCAAPG K T IA + D G L++
Sbjct: 71 LGNHPAHLAGLFYMQEPSAASAVEVLDVQRDDWVLDMCAAPGGKSTQIAAKLQDRGFLVS 130
Query: 116 LDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPC 175
+ R L +++L S NT Q + M+ FDR+L+DAPC
Sbjct: 131 NEIESRRAQILLSNMERLGFSRCMI-------TNTHPQQIAKEMR---GWFDRVLVDAPC 180
Query: 176 SGFGQRPMFYNANSFLN--LDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILV 233
SG G MF + ++ ++ + + A Q +L + Y LK+DG LV
Sbjct: 181 SGEG---MFKKHSKAMDDWSEEHVLACAQRQLHILDSAY-----------AALKEDGTLV 226
Query: 234 YCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLI 293
Y TC+ S+EENE V+ + +HP++ELV G +GL + DL D ++R +
Sbjct: 227 YSTCTYSMEENEQVVYAFMKQHPDMELVDCGVTFGRRGLPYLDL---DTKKLRR----IF 279
Query: 294 PTDRNTDTIGFFICKLRK 311
P D+ G F+ K RK
Sbjct: 280 PMDQGE---GHFVAKFRK 294
>gi|332159509|ref|YP_004424788.1| fmu protein [Pyrococcus sp. NA2]
gi|331034972|gb|AEC52784.1| fmu protein [Pyrococcus sp. NA2]
Length = 451
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 109/195 (55%), Gaps = 23/195 (11%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
I+Q S +A L+ QPG+ V+D+ AAPG K TH+A LM + G + A D K R+ +L+
Sbjct: 244 IVQEEASAVASIVLNPQPGEIVVDLAAAPGGKTTHMAELMKNKGKIYAFDIDKMRMKRLK 303
Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNA 187
E ++++ + ++ + D+ + + +I + +E D++LLDAPC+ G + N
Sbjct: 304 EFVQRMGIKIVKPIIKDARK---APEI------IGEEVADKVLLDAPCTSSGT--IGKNP 352
Query: 188 NSFLNL-DKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEA 246
L ++KIK A +Q++LL++ + L+K G L+Y TCS+ EENE
Sbjct: 353 ELRWRLREEKIKEMAELQRELLESAAK-----------LVKPGGRLLYTTCSIFKEENEE 401
Query: 247 VIAWILHRHPEVELV 261
I W L HPE +LV
Sbjct: 402 NIKWFLANHPEFKLV 416
>gi|387929415|ref|ZP_10132092.1| hypothetical protein PB1_13404 [Bacillus methanolicus PB1]
gi|387586233|gb|EIJ78557.1| hypothetical protein PB1_13404 [Bacillus methanolicus PB1]
Length = 457
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 123/245 (50%), Gaps = 30/245 (12%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q ++ LD + +KVLD+CAAPG K T +A LMN+ G L+A + R L E
Sbjct: 86 IQEPSAMFVAEQLDPKGTEKVLDLCAAPGGKTTQLAGLMNNKGLLLANEIHPKRAKALSE 145
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
I++L ++ ++ N + + ER FD+IL+DAPCSG G A
Sbjct: 146 NIERLGIT-------NTVVTNETPEKLAERF---PGYFDKILVDAPCSGEGMFRKDEEAI 195
Query: 189 SFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVI 248
F + ++ +++ A Q+K++ + Y+ +LK+ G+LVY TC+ S EENE VI
Sbjct: 196 EFWS-EQHVEACALQQRKIMDSAYK-----------MLKEGGVLVYSTCTFSPEENEQVI 243
Query: 249 AWILHRHPEVEL--VQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFI 306
+ + ++P++EL +Q P + A + + A R P + + G F
Sbjct: 244 EYFIEKYPDMELIDIQKPPGVDNGNPAWSKTKNSELAHTARLWPHHLKGE------GHFA 297
Query: 307 CKLRK 311
KLRK
Sbjct: 298 AKLRK 302
>gi|138895319|ref|YP_001125772.1| tRNA and rRNA cytosine-C5-methylase [Geobacillus
thermodenitrificans NG80-2]
gi|134266832|gb|ABO67027.1| tRNA and rRNA cytosine-C5-methylase [Geobacillus
thermodenitrificans NG80-2]
Length = 457
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 123/249 (49%), Gaps = 33/249 (13%)
Query: 73 PSILA-GHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIK 131
PS +A L PG+ VLD+CAAPG K T + +M + G L+A + RV L E ++
Sbjct: 91 PSAMAVAEALRPAPGETVLDLCAAPGGKTTQLGAMMENKGLLVANEIHPKRVKALAENVE 150
Query: 132 KLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFL 191
+L L+ ++ +N + + ER FD+IL+DAPCSG G A SF
Sbjct: 151 RLGLT-------NTVVVNETPEALAERF---PGFFDKILVDAPCSGEGMFRKEEEAASFW 200
Query: 192 NLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWI 251
+ ++ A Q+++LQ+ Y +LK+ GILVY TC+ S EENE I W+
Sbjct: 201 S-QAYVEECAARQRRILQSAY-----------AMLKEGGILVYSTCTFSPEENEQTIEWL 248
Query: 252 LHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQ---RFGPPLIPTDRNTDTIGFFICK 308
L + ++ +V G++ + ++A ++ R P + + G FI K
Sbjct: 249 LQTYDDLRMVPIEKTGGIE-PGRPEWTKTNRAELEHAARLWPHRVKGE------GHFIAK 301
Query: 309 LRKKYGEAP 317
L+K+ AP
Sbjct: 302 LQKQRPTAP 310
>gi|448474110|ref|ZP_21602078.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum aidingense
JCM 13560]
gi|445818390|gb|EMA68249.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum aidingense
JCM 13560]
Length = 310
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 119/249 (47%), Gaps = 30/249 (12%)
Query: 74 SILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKL 133
S+L G LD QPG++V D CAAPG+K T IA M+D GT++A D + R++ L ++L
Sbjct: 87 SVLPGLALDPQPGERVWDACAAPGSKTTQIADAMDDDGTVVANDNNLGRLSALRHNAERL 146
Query: 134 QLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNL 193
+++ D+ +T L + FDR L+DAPCS G + L
Sbjct: 147 GVTNAIVTNQDARNFSTK--------PLAFDEFDRALVDAPCSCEGTCRKNPDVVDQWTL 198
Query: 194 DKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILH 253
D + A IQK +L + + + G +VY TC+ + EENEAV+ +L
Sbjct: 199 D-HVHGVAGIQKGILA-----------RAVQATRPGGTVVYSTCTFAPEENEAVLDHVLA 246
Query: 254 RHPEVELVQT-LPQLGMKGLAHKDLEAEDQAVMQ--RFGPPLIPTDRNTDTIGFFICKLR 310
+ E+V LP + G+ D E D +V + R P + DT GFF KLR
Sbjct: 247 NE-DCEIVDVDLPLDTVPGVTEWDGETFDDSVTRAHRIYP------HHNDTGGFFCAKLR 299
Query: 311 KKYGEAPEI 319
E E+
Sbjct: 300 VGGEENTEV 308
>gi|353237259|emb|CCA69236.1| probable NOP2-nucleolar protein [Piriformospora indica DSM 11827]
Length = 683
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/288 (30%), Positives = 134/288 (46%), Gaps = 51/288 (17%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+ +SS+ I P LAGHY LD +P +
Sbjct: 353 LINRGVNLEPIGKWSKEGLQVFESSVPIGAT-PEYLAGHYMLQSASSFLPVLALDPKPNE 411
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM +APG K T+I+ LM +TG + A D +K R L + +L ++ YD
Sbjct: 412 RVLDMASAPGGKTTYISALMQNTGLVFANDATKARTKSLSANVHRLGCKNVIVCNYDGRE 471
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY---ANIQ 204
FDR+LLDAPCSG G + + + ++K + + +++Q
Sbjct: 472 FPKVIG-----------GFDRVLLDAPCSGTG----VISKDPSVKINKSERDFVLLSHLQ 516
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL 264
K+L+ V K I+VY TCS+ EE+EAV+A+ L + P V+LV T
Sbjct: 517 KQLILCAIDSVD---------PKTAAIVVYSTCSIMPEEDEAVVAYALRKRPHVKLVPTG 567
Query: 265 PQLGMKGLAH---KDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKL 309
+ G +G + K E + +RF P + D GF++ KL
Sbjct: 568 LEFGKEGFTNFRGKQF-GESLKLTRRFYPHVHNMD------GFYVAKL 608
>gi|387592440|gb|EIJ87464.1| nucleolar protein [Nematocida parisii ERTm3]
gi|387596924|gb|EIJ94544.1| nucleolar protein [Nematocida parisii ERTm1]
Length = 415
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/251 (31%), Positives = 122/251 (48%), Gaps = 40/251 (15%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
ILQ+ S LA LD Q + ++DMCAAPG K THIA LMN+TGT+ A D S+ R L
Sbjct: 128 ILQSPSSSLAVIALDPQENEVIVDMCAAPGGKTTHIAALMNNTGTIYANDVSEERALSLA 187
Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNA 187
++++ +S+ V L + +R+LLDAPCSG G +
Sbjct: 188 ANLQRMGVSNTIVTVMGG-------------RGLPYTNVNRVLLDAPCSGTG----VLSK 230
Query: 188 NSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
+ +K K +Q K + + + + + + + ILVY TCS+ VEENE +
Sbjct: 231 DPAAKRNKDAKVIKQLQYKQMALILKAFDMLNPKN-----PESILVYSTCSILVEENEYI 285
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLA-------HKDLEAEDQAVMQRFGPPLIPTDRNTD 300
+ ++L + ++++T +G +G H L+ +RF P + TD
Sbjct: 286 VDYLLKKRKNAKVIETNLPIGKEGFKSYRGWVFHPSLKN-----TRRFYPHIHNTD---- 336
Query: 301 TIGFFICKLRK 311
GFF+ K+RK
Sbjct: 337 --GFFVAKIRK 345
>gi|404330247|ref|ZP_10970695.1| RNA methylase [Sporolactobacillus vineae DSM 21990 = SL153]
Length = 460
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 124/251 (49%), Gaps = 34/251 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q ++ LD +PG++VLD+CAAPG K T IA M++ G L++ + R L E
Sbjct: 85 IQEPSAMFVAETLDARPGERVLDLCAAPGGKSTQIAGAMHNQGLLVSNEPYPKRAKALSE 144
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
I+++ +++ T V + T + +FDR+L+DAPCSG G +A
Sbjct: 145 NIERMGITN--TLVTNETPERLADYF--------PGNFDRVLVDAPCSGEGMFRKDPDAA 194
Query: 189 SFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVI 248
+ + + A +QK++L+ Q I +L+ G+LVY TC+ S EE+E I
Sbjct: 195 QYWS-PAHVTECAALQKEILE-----------QAITMLRPGGVLVYSTCTFSPEEDERQI 242
Query: 249 AWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR----NTDTIGF 304
+L HPE+ELV + G++ + E+ + P L T R + G
Sbjct: 243 EQVLQNHPEMELVPIVKSGGIEDGRPEWTESGN--------PQLRRTARLWPHQLEGEGH 294
Query: 305 FICKLRKKYGE 315
F+ KLRK G+
Sbjct: 295 FVAKLRKSQGD 305
>gi|319892211|ref|YP_004149086.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
pseudintermedius HKU10-03]
gi|317161907|gb|ADV05450.1| Ribosomal RNA small subunit methyltransferase B [Staphylococcus
pseudintermedius HKU10-03]
Length = 433
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 117/252 (46%), Gaps = 58/252 (23%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+ Y+++QPG VLD C+APG K HIA ++N GT++A D ++ ++
Sbjct: 231 IQDKSSMFVAEYMELQPGDAVLDSCSAPGGKACHIAEILNGQGTVLATDVHAHKIQLIDH 290
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
I+KL L+ I+ +D+T + + FD++LLDAPCSG G +P
Sbjct: 291 NIRKLHLTGIRAMQHDAT-------------QPYDQQFDKVLLDAPCSGLGVLRHKPEI- 336
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
++ + +K ++Q +++ V + LK G +VY TC++ EN+
Sbjct: 337 ---KYVITPQDVKGLVDLQLRIIDNVSKH-----------LKAGGTMVYSTCTIEQLEND 382
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPP-----LIPTDRNTD 300
VI L HP+ E D R P L+P D + D
Sbjct: 383 NVIYTFLKSHPDFEF--------------------DPIEDPRTHEPVKTLQLLPQDMHAD 422
Query: 301 TIGFFICKLRKK 312
GFFI ++RKK
Sbjct: 423 --GFFITRVRKK 432
>gi|354807034|ref|ZP_09040511.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
curvatus CRL 705]
gi|354514539|gb|EHE86509.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
curvatus CRL 705]
Length = 447
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/257 (31%), Positives = 122/257 (47%), Gaps = 56/257 (21%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDT--GTLIALDKSKPRVTK 125
I+Q+ S+L L +QP ++LD CAAPG K TH+A ++ + G + ALD + +V
Sbjct: 234 IIQDESSMLVAPSLQLQPSDRILDACAAPGGKTTHMATYLDASQGGQITALDIHEHKVRL 293
Query: 126 LEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QR 181
+E+ K+L ++ I D+ ++ + + E+FD+IL+DAPCSG G ++
Sbjct: 294 IEQNAKRLHVADVIDARALDARKVGE---------QFEPETFDKILVDAPCSGLGLMRRK 344
Query: 182 PMF---YNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS 238
P A LNL K IQ +L+AV P LK G L Y TC+
Sbjct: 345 PEIKYGRQAADLLNLQK-------IQLAILEAV-----------APTLKVGGQLTYSTCT 386
Query: 239 LSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLI---PT 295
+ EEN+ V+A + HPE E+V A D+ + P + P
Sbjct: 387 IVPEENQQVVAAFVANHPEFEIVPV---------------ALDKPLPANQATPFVQIYPD 431
Query: 296 DRNTDTIGFFICKLRKK 312
D TD GFFI L ++
Sbjct: 432 DYQTD--GFFIACLTRR 446
>gi|196249240|ref|ZP_03147939.1| RNA methylase, NOL1/NOP2/sun family [Geobacillus sp. G11MC16]
gi|196211469|gb|EDY06229.1| RNA methylase, NOL1/NOP2/sun family [Geobacillus sp. G11MC16]
Length = 454
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 123/249 (49%), Gaps = 33/249 (13%)
Query: 73 PSILA-GHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIK 131
PS +A L PG+ VLD+CAAPG K T + +M + G L+A + RV L E ++
Sbjct: 88 PSAMAVAEALRPAPGETVLDLCAAPGGKTTQLGAMMENKGLLVANEIHPKRVKALAENVE 147
Query: 132 KLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFL 191
+L L+ ++ +N + + ER FD+IL+DAPCSG G A SF
Sbjct: 148 RLGLT-------NTVVVNETPEALAERF---PGFFDKILVDAPCSGEGMFRKEEEAASFW 197
Query: 192 NLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWI 251
+ ++ A Q+++LQ+ Y +LK+ GILVY TC+ S EENE I W+
Sbjct: 198 S-QAYVEECAARQRRILQSAY-----------AMLKEGGILVYSTCTFSPEENEQTIEWL 245
Query: 252 LHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQ---RFGPPLIPTDRNTDTIGFFICK 308
L + ++ +V G++ + ++A ++ R P + + G FI K
Sbjct: 246 LQTYDDLRMVPIEKTGGIE-PGRPEWTKTNRAELEHAARLWPHRVKGE------GHFIAK 298
Query: 309 LRKKYGEAP 317
L+K+ AP
Sbjct: 299 LQKQRPTAP 307
>gi|423406710|ref|ZP_17383859.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG2X1-3]
gi|401660000|gb|EJS77483.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG2X1-3]
Length = 444
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 116/245 (47%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G VLD CAAPG K THIA + TG +++LD +V +++
Sbjct: 232 IQDESSMLVARALEPDEGDVVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQ 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
+L L +++T D+ ++ ESFD+IL+DAPCSGFG + +
Sbjct: 292 QADRLGLENVETKALDARKVQEH---------FANESFDKILVDAPCSGFG--VIRRKPD 340
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE
Sbjct: 341 IKLGKDKGDSERLSTIQLAILEKI-----------APLLKQGGRLVYSTCTIEKIENEQA 389
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L HPE E T+ + L+ E + R P TD GF+I
Sbjct: 390 IKQFLQEHPEFEWDTTIKDRMPEKLSPYIDEGQ-----VRILPHYFATD------GFYIA 438
Query: 308 KLRKK 312
LRKK
Sbjct: 439 CLRKK 443
>gi|419662195|ref|ZP_14192502.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
2008-831]
gi|380638722|gb|EIB56258.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
2008-831]
Length = 292
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 137/283 (48%), Gaps = 50/283 (17%)
Query: 32 LSIYCYALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLD 91
+++YCY D + + LS + A + + +QN S L L+V+ GQ VLD
Sbjct: 55 INVYCYLFDAKDKAI-------LSSMK--AFNEAHFYIQNYSSYLCALNLEVKAGQSVLD 105
Query: 92 MCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTS 151
MCAAPG K ++A M +TG L + S+ R L++ +K +++ + + D I
Sbjct: 106 MCAAPGGKSINLANFMQNTGYLACNEMSRDRFFILQKNLKNYGVNA-KVFMKDGKNIGNL 164
Query: 152 SQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLD---KKIKSYANIQKKLL 208
+ FD+ILLDAPCS F + NL+ K+IK+ A QKKLL
Sbjct: 165 CPL----------KFDKILLDAPCSTFAKIG--------FNLEKSYKEIKNIAKTQKKLL 206
Query: 209 QAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLG 268
+ + LK G LVY TC+ + EENE VI L ++EL+ +
Sbjct: 207 HS-----------ALKALKIGGELVYSTCTFTKEENEEVIENALKSEFKLELL----DID 251
Query: 269 MKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
++ + K ++E+ A + + ++P+ D GFFI KLRK
Sbjct: 252 LENVEAKAGQSEEFAEISK-CRRILPS---LDYDGFFIAKLRK 290
>gi|410083445|ref|XP_003959300.1| hypothetical protein KAFR_0J00970 [Kazachstania africana CBS 2517]
gi|372465891|emb|CCF60165.1| hypothetical protein KAFR_0J00970 [Kazachstania africana CBS 2517]
Length = 610
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/269 (32%), Positives = 125/269 (46%), Gaps = 44/269 (16%)
Query: 55 SQVPNVALDSSMG---ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTG 111
SQVP A + ILQ S L LD Q +++LDM +APG K T+I+ LM +TG
Sbjct: 307 SQVPIGATPEYLAGQYILQAASSFLPVIALDPQENERILDMASAPGGKTTYISALMKNTG 366
Query: 112 TLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILL 171
+ A D +K R L I +L ++ YD+ FDRILL
Sbjct: 367 CVFANDANKNRTKSLIANIHRLGCTNTIVCNYDAREFPKVIG-----------GFDRILL 415
Query: 172 DAPCSGFGQRPMFYNANSFLNLDKKIKSYANI---QKKLLQAVYRFVSLFDWQGIPLLKK 228
DAPCSG G + + + + K + I QK+LL + V G
Sbjct: 416 DAPCSGTG----VIGKDQSVKVSRTEKDFIQIPHLQKQLLLSAIDSVDANSKSG------ 465
Query: 229 DGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRF 288
G++VY TCS++VEE+EAV+ + L + P V+LV+T +G +G ++F
Sbjct: 466 -GVIVYSTCSVAVEEDEAVVDYALRKRPNVKLVETNLAIGKEGFT--------SFRGKKF 516
Query: 289 GPPLIPTDR------NTDTIGFFICKLRK 311
P L T R N D GF++ K +K
Sbjct: 517 HPSLKLTRRYYPHTYNVD--GFYVAKFQK 543
>gi|164687800|ref|ZP_02211828.1| hypothetical protein CLOBAR_01444 [Clostridium bartlettii DSM
16795]
gi|164603075|gb|EDQ96540.1| ribosomal RNA small subunit methyltransferase B [Clostridium
bartlettii DSM 16795]
Length = 441
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 135/272 (49%), Gaps = 43/272 (15%)
Query: 43 FRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTH 102
F A+++ N+ + N + +Q++ S+L G L+ Q KVLD+C+APG K TH
Sbjct: 208 FMDEAIKVNNLKNIENNELYKKGLFTVQDISSMLVGKILNPQKDTKVLDVCSAPGGKTTH 267
Query: 103 IALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ 162
IA LM ++G +I+ D + ++ ++ ++ +L L ++ ++D+ ++ S ID
Sbjct: 268 IATLMENSGQVISRDIFEHKIKLIQNSVNRLGLKNVDVQLFDALNLDKDS-ID------- 319
Query: 163 KESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFD 219
FD +L D PCSG G ++P ++IK +QK++LQ ++V
Sbjct: 320 --KFDSVLADVPCSGLGIIKRKPEIKYKEK-----EEIKDLPKLQKQILQNAAKYV---- 368
Query: 220 WQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEA 279
K G L+Y TC++ +EN V+ L + +L + + + + DLE
Sbjct: 369 -------KVGGTLIYSTCTIQDDENIEVVESFLQSNKRFKL-EKIENINI------DLEN 414
Query: 280 EDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
ED+ ++ + P + D GFFI KL++
Sbjct: 415 EDKGYLKIY-PNVHGMD------GFFIAKLKR 439
>gi|428162505|gb|EKX31642.1| hypothetical protein GUITHDRAFT_82915 [Guillardia theta CCMP2712]
Length = 444
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 140/293 (47%), Gaps = 49/293 (16%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ + S V V DSS+ + P LAGHY L
Sbjct: 113 ATALIARGVNLDPIDRWSSVGLVVYDSSVPVGAT-PEYLAGHYMLQSASSFLPVMALSAG 171
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+KVLDMCA+PG K T+IA +M + G +++ D ++ R+ L I+++ + + YD
Sbjct: 172 EHEKVLDMCASPGGKTTYIAAMMKNAGMIVSNDANEKRLKSLVGNIQRMGVRNAVVTNYD 231
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDK---KIKSYA 201
+ + SFDR+LLDAPCSG G + + + + K I+ +
Sbjct: 232 GRLLPSVFS-----------SFDRVLLDAPCSGLG----VISKDPTVRMQKDEGDIQRCS 276
Query: 202 NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
+QK+L+ A V G GI+VY TC+++VEENEAVI + L + V+L+
Sbjct: 277 ALQKELILAAIDCVDASSKTG-------GIIVYSTCTITVEENEAVIDYALKKR-HVKLL 328
Query: 262 QTLP-QLGMKGLAHKDLEAEDQAV--MQRFGPPLIPTDRNTDTIGFFICKLRK 311
T G+ G + +V +RF P + D GFF+ KL+K
Sbjct: 329 DTAGLDFGVPGYGRYRGKQFHPSVSLTRRFYPHVHNMD------GFFVAKLKK 375
>gi|149239082|ref|XP_001525417.1| nucleolar protein NOP2 [Lodderomyces elongisporus NRRL YB-4239]
gi|146450910|gb|EDK45166.1| nucleolar protein NOP2 [Lodderomyces elongisporus NRRL YB-4239]
Length = 637
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/269 (32%), Positives = 123/269 (45%), Gaps = 44/269 (16%)
Query: 55 SQVPNVALDSSMG---ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTG 111
SQVP A + ILQ S L LD Q +++LDM AAPG K T+I+ +M +TG
Sbjct: 329 SQVPIGATPEYLAGQYILQAASSFLPVMALDPQENERILDMAAAPGGKTTYISAMMKNTG 388
Query: 112 TLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILL 171
+ A D +K R L I +L + YD+ FDRILL
Sbjct: 389 CIFANDANKARTKSLIANIHRLGCRNTIVCNYDAREFPKVIG-----------GFDRILL 437
Query: 172 DAPCSGFGQRPMFYNANSFLNLDKKIKSYANI---QKKLLQAVYRFVSLFDWQGIPLLKK 228
DAPCSG G + + + + K + I QK+LL + V G
Sbjct: 438 DAPCSGTG----VIAKDESVKVSRTEKDFIQIPHLQKQLLLSAIDSVDANSPTG------ 487
Query: 229 DGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRF 288
G++VY TCS++V+ENEAV+ + L + P V+LV+T +G +G + F
Sbjct: 488 -GVIVYSTCSVAVDENEAVVDYALRKRPNVKLVETGLAIGKEGFT--------SYRGKHF 538
Query: 289 GPPLIPTDR------NTDTIGFFICKLRK 311
P L T R N D GF++ K +K
Sbjct: 539 NPKLNLTRRYYPHTYNVD--GFYVAKFKK 565
>gi|60416136|gb|AAH90742.1| Si:dkey-91i17.1 protein [Danio rerio]
Length = 658
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 134/293 (45%), Gaps = 56/293 (19%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV ++ S+V V DSS+ I P LAGHY L Q G+
Sbjct: 321 LINRGVNLDPLGKWSKVGLVIYDSSVPIGAT-PEYLAGHYMLQGASSFLPVMALSPQEGE 379
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+LDM AAPG K T++A LM +TG ++A D + R+ + I +L +++ YD +
Sbjct: 380 SMLDMSAAPGGKTTYMAQLMRNTGMIVANDANVDRLKSVVGNIHRLGVTNAVICNYDGRQ 439
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYANIQ 204
FDR+LLDAPCSG G + P + I A++Q
Sbjct: 440 FPKVMG-----------GFDRVLLDAPCSGTGVISKDPAVKTGKD----EADILRSAHLQ 484
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL 264
K+L+ + V+ G G LVYCTCS+ VEENE V+ + L + V+LV T
Sbjct: 485 KELILSAIDSVNADSQTG-------GYLVYCTCSIMVEENEWVVDYALKKR-NVKLVPTG 536
Query: 265 PQLGMKGLAHKDLEAEDQAVMQRFGPPL------IPTDRNTDTIGFFICKLRK 311
G +G + +RF P L P N D GFF+ KL+K
Sbjct: 537 LDFGKEGFT--------RFKEKRFHPSLKLSRRFYPHSHNMD--GFFVAKLKK 579
>gi|134299563|ref|YP_001113059.1| sun protein [Desulfotomaculum reducens MI-1]
gi|134052263|gb|ABO50234.1| sun protein [Desulfotomaculum reducens MI-1]
Length = 453
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 126/248 (50%), Gaps = 40/248 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L H L+ G KVLD+ +APG K TH+A LM D+G +IA D ++ + +
Sbjct: 239 VQDESSMLVAHVLNPSSGAKVLDVASAPGGKTTHLAQLMGDSGQIIAFDIYSHKLDLIMD 298
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
++L + SIQ V D+ ++ Q D +L+DAPCSG G +RP
Sbjct: 299 NCRRLGIQSIQAEVADARDLHKKYQ----------GWADYVLVDAPCSGLGVLRRRP--- 345
Query: 186 NANSFLNLD-KKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
+S D ++ +QK++LQ+ + L+ G+LVY TC+++ EEN
Sbjct: 346 --DSRWRKDPSQLPGIVRLQKEILQSAAQ-----------CLRPGGVLVYSTCTITKEEN 392
Query: 245 EAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
V+ L HPE ++ L QL GL + ++ ++ +Q L+P D GF
Sbjct: 393 IGVVEEFLKNHPEF-IMGDLRQLLPPGLDEE--KSAEKGYIQ-----LLPHVHGMD--GF 442
Query: 305 FICKLRKK 312
FI +LRKK
Sbjct: 443 FIARLRKK 450
>gi|420264395|ref|ZP_14767026.1| sun protein [Enterococcus sp. C1]
gi|394768368|gb|EJF48296.1| sun protein [Enterococcus sp. C1]
Length = 452
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/250 (33%), Positives = 122/250 (48%), Gaps = 44/250 (17%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMN--DTGTLIALDKSKPRVTKL 126
+Q+ S+L L V +VLD CAAPG K THIA ++ + G + ALD +V +
Sbjct: 241 IQDESSMLVAPVLQVARNHQVLDACAAPGGKTTHIAAFLSAAEGGKVTALDIHAHKVKLI 300
Query: 127 EETIKKLQLSSI-QTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP 182
++ ++L + ++ +T V D+ + E FDRIL+DAPCSG G ++P
Sbjct: 301 QQNAQRLGVEAVVETRVMDARETAQT---------FAPEQFDRILVDAPCSGLGLMRRKP 351
Query: 183 MFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVE 242
+ + + IQ+++L++ P LKK GI+VY TC++ E
Sbjct: 352 DI----KYSKTEADFQRLPQIQREILES-----------AAPTLKKSGIMVYSTCTILEE 396
Query: 243 ENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTI 302
EN+ V+A L HPE E +P LA L AE +Q + P D TD
Sbjct: 397 ENQQVVAAFLADHPEFE---QMP------LAVGPLAAE---AVQEDMLTIYPQDFMTD-- 442
Query: 303 GFFICKLRKK 312
GFFI LRKK
Sbjct: 443 GFFISCLRKK 452
>gi|430749697|ref|YP_007212605.1| tRNA/rRNA cytosine-C5-methylase [Thermobacillus composti KWC4]
gi|430733662|gb|AGA57607.1| tRNA/rRNA cytosine-C5-methylase [Thermobacillus composti KWC4]
Length = 521
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 129/263 (49%), Gaps = 47/263 (17%)
Query: 73 PSILA-GHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIK 131
PS +A L+VQPG +VLD+CAAPG K + IA + G L+A D ++ R L +
Sbjct: 92 PSAMAPAELLNVQPGHRVLDLCAAPGGKSSQIAAKLKGHGLLVANDNARERTKAL---AR 148
Query: 132 KLQLSSIQTHVYDSTRINTSSQIDIERM-KLQKESFDRILLDAPCSGFGQRPMFYNANSF 190
L+L+ ++ V +N + ER+ + + FDRIL+DAPCSG G MF S
Sbjct: 149 NLELAGVRNAVV----LNE----EPERLVPVFRAFFDRILVDAPCSGEG---MFRKDESM 197
Query: 191 LN--LDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVI 248
+ L + ++Q+++L+ +L G+LVY TC+ S EENE I
Sbjct: 198 IADWLRHPAAHWTSMQREILR-----------HAAEMLAPGGVLVYSTCTFSPEENEERI 246
Query: 249 AWILHRHPEVELVQTLPQLG----------MKGLAHKDLEAEDQAVMQRFGPPLIPTDRN 298
A +L P+ E+V P G ++G+ H+ +EA V R P I
Sbjct: 247 AELLAERPDFEVVPVPPAHGWAPGRPDWVSLEGIEHRHVEAVAGTV--RLWPHRI----- 299
Query: 299 TDTIGFFICKLRKKYGEAPEIYI 321
+ G + LR++ G++P + +
Sbjct: 300 -EGEGHYAAVLRRQGGDSPGLNV 321
>gi|332638217|ref|ZP_08417080.1| 16S rRNA methyltransferase B [Weissella cibaria KACC 11862]
Length = 457
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/258 (31%), Positives = 119/258 (46%), Gaps = 44/258 (17%)
Query: 61 ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDT--GTLIALDK 118
A + LQ+ ++L LD+ P +VLD AAPG K T IA +N T G + ALD
Sbjct: 237 AFKDGLVTLQDESAMLMAPSLDIHPDMQVLDAAAAPGGKTTQIATYLNATEGGIVEALDI 296
Query: 119 SKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSG 177
+V + + ++L ++ + D+ +++ + E FDRIL+DAPCSG
Sbjct: 297 HDHKVGLINQNAERLHVADRVHARTLDARKVDEA---------FADEQFDRILVDAPCSG 347
Query: 178 FGQRPMFYNANSFLNLDKKIKSYANIQK---KLLQAVYRFVSLFDWQGIPLLKKDGILVY 234
FG + DK + ++QK +L+A P LK G +VY
Sbjct: 348 FG----LLRRKPEIRYDKTMADSLSLQKIQLGILEA-----------AAPKLKAGGRMVY 392
Query: 235 CTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIP 294
TC++ ENE V+ L HP+ ELV T DLEA+D M + P
Sbjct: 393 GTCTILQSENEDVVDQFLAEHPDFELVPTYTAY--------DLEAQDDRGMVH----MFP 440
Query: 295 TDRNTDTIGFFICKLRKK 312
D +D GFFI L+KK
Sbjct: 441 DDFESD--GFFIATLQKK 456
>gi|407922983|gb|EKG16073.1| Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p [Macrophomina
phaseolina MS6]
Length = 786
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 94/303 (31%), Positives = 136/303 (44%), Gaps = 58/303 (19%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV +E S+V +S + I P LAGHY L Q
Sbjct: 357 AQALINRGVTLEPVGKWSKVGLQIFESQVPIGAT-PEYLAGHYILQAASSFLPVMALAPQ 415
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDM +APG K THIA LM +TG + A D +K R L I +L + + YD
Sbjct: 416 ENERILDMASAPGGKTTHIAALMKNTGCIFANDANKDRAKGLIGNIHRLGVKNTIVCNYD 475
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY---A 201
+ ++ R+ FDR+LLDAPCSG G ++ + +K K +
Sbjct: 476 A--------MEFPRV---IGGFDRVLLDAPCSGTG----VIAKDASVKTNKTEKDFMRLP 520
Query: 202 NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
++QK+LL V G G +VY TCS++V+ENE V+ + L + P V+LV
Sbjct: 521 HLQKQLLLHAIDSVDHSSKTG-------GYIVYSTCSVTVDENERVVQYALEKRPNVKLV 573
Query: 262 QTLPQLGMKGLA-------HKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKKYG 314
T G +G H L+ +R+ P D GFF+ K KK G
Sbjct: 574 STGLTFGKEGFTSFQGRQFHHSLKE-----TRRYYPHAYNVD------GFFVAKF-KKIG 621
Query: 315 EAP 317
P
Sbjct: 622 PTP 624
>gi|348555036|ref|XP_003463330.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
[Cavia porcellus]
Length = 800
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 97/304 (31%), Positives = 139/304 (45%), Gaps = 52/304 (17%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+ V DSS+ I P LAGHY L Q
Sbjct: 318 AQALINRGVNLDPLGKWSKTGLVVYDSSVPIGAT-PEYLAGHYMLQGASSMLPVMALAPQ 376
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDMC APG K ++IA LM +TG ++A D + R+ + + +L +++ YD
Sbjct: 377 EHERILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNAIISHYD 436
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANI 203
+ FDR+LLDAPCSG G + + N D+K + A++
Sbjct: 437 GRQFPKVVG-----------GFDRVLLDAPCSGTGV--ISKDPAVKTNKDEKDVLRCAHL 483
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
QK+LL + V+ G G LVYCTCS+ VEENE V+ + L + V LV T
Sbjct: 484 QKELLLSAIDSVNAASKTG-------GYLVYCTCSIMVEENEWVVDYALKKR-NVRLVPT 535
Query: 264 LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRKKYGEAP 317
G +G + +RF P L T R N D GFFI K +K P
Sbjct: 536 GLDFGQEGFT--------RFRERRFHPTLRSTRRFYPHTHNMD--GFFIAKFKKFSNSIP 585
Query: 318 EIYI 321
+ I
Sbjct: 586 QAEI 589
>gi|395847735|ref|XP_003796522.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 [Otolemur
garnettii]
Length = 818
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 95/294 (32%), Positives = 137/294 (46%), Gaps = 52/294 (17%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+ V DSS+ I P LAGHY L Q
Sbjct: 323 AQALINRGVNLDPLGKWSKTGLVIYDSSVPIGAT-PEYLAGHYMLQGASSMLPVMALAPQ 381
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDMC APG K ++IA LM +TG ++A D + R+ + + +L +++ YD
Sbjct: 382 EHERILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYD 441
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANI 203
+ FDR+LLDAPCSG G + + + N D+K I A++
Sbjct: 442 GRQFPKVVG-----------GFDRVLLDAPCSGTGV--ISKDPSVKTNKDEKDILRCAHL 488
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
QK+LL + V+ G G +VYCTCS+ VEENE V+ + L + V LV T
Sbjct: 489 QKELLLSAIDSVNATSKTG-------GYIVYCTCSIMVEENEWVVDYALKKR-NVRLVPT 540
Query: 264 LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
G +G + +RF P L T R N D GFFI K +K
Sbjct: 541 GLDFGQEGFT--------RFRERRFHPSLRSTRRFYPHTHNMD--GFFIAKFKK 584
>gi|258645366|ref|ZP_05732835.1| ribosomal RNA small subunit methyltransferase B [Dialister invisus
DSM 15470]
gi|260402715|gb|EEW96262.1| ribosomal RNA small subunit methyltransferase B [Dialister invisus
DSM 15470]
Length = 454
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 121/256 (47%), Gaps = 40/256 (15%)
Query: 62 LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKP 121
L + + +Q S++ L G VLDMCAAPG+K THIA LM + G++ A D
Sbjct: 238 LQTGLIYIQTASSMIPAKVLGPDAGDHVLDMCAAPGSKTTHIAALMGNRGSIDAWDVYPH 297
Query: 122 RVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQR 181
+V +++ K+L +S I T V DS ++ + E++D++LLDAPCSG G
Sbjct: 298 KVKLIKDNAKRLGISIIHTEVRDS----------VKPLPFLYETYDKVLLDAPCSGLGVL 347
Query: 182 PMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSV 241
+ + + + +QK+L++ ++ K G+LVY TC+L+
Sbjct: 348 GHKVELR-WRRKESDLSVFPPLQKQLIEQAAKYT-----------KTGGVLVYSTCTLNP 395
Query: 242 EENEAVIAWILHRHPEVELVQ-TLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTD 300
+ENE +I L H E + P LG K L M P L+ +D
Sbjct: 396 DENEHIINEFLSLHSEFAPEEFNFPVLG------KSLNG-----MMTLYPDLVRSD---- 440
Query: 301 TIGFFICKLRKKYGEA 316
GFF+ KLRK EA
Sbjct: 441 --GFFVAKLRKVSHEA 454
>gi|329926565|ref|ZP_08280978.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus sp.
HGF5]
gi|328939106|gb|EGG35469.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus sp.
HGF5]
Length = 442
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/251 (31%), Positives = 119/251 (47%), Gaps = 45/251 (17%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L + +PG +VLD CAAPG K H+ LM D G+++A D + + +
Sbjct: 228 IQDESSMLVAEAVQPEPGMRVLDCCAAPGGKSAHMGELMKDEGSIVANDIHAHKGKLISD 287
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
+L L DS I T +D+ + + SFDRILLDAPCSG G ++P
Sbjct: 288 QASRLGL--------DSISIVTGDALDLAD-RFEPASFDRILLDAPCSGLGVIRRKPDLK 338
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
S + I A +Q +LL++V LL+ GILVY TC++ ENE
Sbjct: 339 WGKS----QEDIHEIAALQLRLLESVS-----------TLLRPGGILVYSTCTIEPMENE 383
Query: 246 AVIAWILHRHPEVELVQ----TLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDT 301
VI+ L H E + + L +LG L+ G ++P ++D
Sbjct: 384 GVISAFLEGHSEFAIAEDGLGALSRLGENSLSRGG------------GIQILPQHYHSD- 430
Query: 302 IGFFICKLRKK 312
GF+I +L ++
Sbjct: 431 -GFYIARLGRR 440
>gi|328874823|gb|EGG23188.1| NOL1/NOP2/Sun family protein [Dictyostelium fasciculatum]
Length = 713
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 84/262 (32%), Positives = 124/262 (47%), Gaps = 57/262 (21%)
Query: 73 PSILAGHY-------------LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKS 119
P LAGHY L+ QPG+++LD+CA+PG K T++A LM +TGTL+A D +
Sbjct: 368 PEYLAGHYIQQSASSFLPVVALEPQPGERILDLCASPGGKTTYVAALMKNTGTLVANDIN 427
Query: 120 KPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG 179
+ R+ L I +L + + S +D FDR L+DAPC G G
Sbjct: 428 EERMRSLVANIHRLGVKNT-----------IVSNLDGREYPKTMGGFDRCLVDAPCVGLG 476
Query: 180 QRPMFYNANSFLNLDKKIKSY---ANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT 236
+ + L K + N+QK+L+ V G GI+VY T
Sbjct: 477 ----VIAKDQQIKLSKSQRDVDLCVNMQKELILHAIDSVDAKSPTG-------GIIVYST 525
Query: 237 CSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGL-AHKDLEAEDQAVMQRFGPPLIPT 295
CSL+VEENE V+ + L R+ +V L+ T + G++G A++ RF P + T
Sbjct: 526 CSLTVEENEGVVDYAL-RNRDVILLDTGVEFGVQGFTAYR---------HHRFHPSVALT 575
Query: 296 DR------NTDTIGFFICKLRK 311
R N D GF++ K +K
Sbjct: 576 KRYYPHTHNMD--GFYVAKFKK 595
>gi|126140362|ref|XP_001386703.1| nucleolar RNA methyltransferase [Scheffersomyces stipitis CBS 6054]
gi|126093987|gb|ABN68674.1| nucleolar RNA methyltransferase [Scheffersomyces stipitis CBS 6054]
Length = 625
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 90/296 (30%), Positives = 132/296 (44%), Gaps = 55/296 (18%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ ++V DS + I P LAGHY L Q
Sbjct: 297 AQTLVNRGVNLQPIGSWTKVGLQVFDSQVPIGAT-PEYLAGHYILQAASSFLPVIALAPQ 355
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
++VLDM AAPG K T+I+ LM +TG + A D +K R L I +L + YD
Sbjct: 356 ENERVLDMAAAPGGKTTYISALMKNTGCVFANDANKARTKSLIANIHRLGCKNTIVCNYD 415
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANI- 203
+ FDR+LLDAPCSG G + + + + K + I
Sbjct: 416 AREFPKVIG-----------GFDRVLLDAPCSGTG----VIAKDESVKVSRTEKDFIQIP 460
Query: 204 --QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
QK+LL + V G GI+VY TCS++V+ENE+V+ + L + P V+L+
Sbjct: 461 HLQKQLLLSAIDSVDANSATG-------GIIVYSTCSIAVDENESVVDYALRKRPNVKLI 513
Query: 262 QTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
+ ++G +G + F P L T R N D GFF+ K +K
Sbjct: 514 EAGLEIGKEGFT--------SYRGKHFNPSLNLTRRYYPHTYNVD--GFFVAKFKK 559
>gi|323141164|ref|ZP_08076065.1| ribosomal RNA small subunit methyltransferase B
[Phascolarctobacterium succinatutens YIT 12067]
gi|322414307|gb|EFY05125.1| ribosomal RNA small subunit methyltransferase B
[Phascolarctobacterium succinatutens YIT 12067]
Length = 453
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 120/245 (48%), Gaps = 41/245 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L QPG +VLDMC+APG K TH+A LM D G +IA D + ++ + E
Sbjct: 248 IQDESSMLVAPVLAPQPGMRVLDMCSAPGGKATHVAQLMQDKGEVIACDIHEHKLELIAE 307
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
+L + S++T D+ ++ S + + FDR+L+DAPCSG G A
Sbjct: 308 NAARLGMKSVKTLQNDALQLR-SEWLGV---------FDRVLVDAPCSGLGVLRRRAEAR 357
Query: 189 SFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVI 248
+ K +K + +Q +L+ ++V K G +VY TC++ EN ++
Sbjct: 358 -WRKQRKDLKLFPPLQLAILKNAAQYV-----------KDGGTMVYSTCTIEQSENHYLV 405
Query: 249 AWILHRHPEVELVQ-TLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
L +HPE + V+ T P L E +Q L+P + D GF+IC
Sbjct: 406 EEFLTQHPEWQRVEFTHP-----------LTGEQVQELQ-----LLPQNDGID--GFYIC 447
Query: 308 KLRKK 312
KL KK
Sbjct: 448 KLMKK 452
>gi|335996622|ref|ZP_08562539.1| 23S rRNA m(5)C methyltransferase [Lactobacillus ruminis SPM0211]
gi|335351692|gb|EGM53183.1| 23S rRNA m(5)C methyltransferase [Lactobacillus ruminis SPM0211]
Length = 458
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 116/218 (53%), Gaps = 24/218 (11%)
Query: 54 LSQVPNVALDSSMGIL--QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTG 111
+ V +L+ G + Q+L ++ G +PG+K+LD+CAAPG K +H+A LMN+ G
Sbjct: 62 VGSVSGNSLEHQTGYVYSQDLSAMYVGEVCGPRPGEKILDLCAAPGGKSSHLASLMNNEG 121
Query: 112 TLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILL 171
L++ + ++ R L E ++++ ++ D T + +K ++ FD+I++
Sbjct: 122 LLVSNEINRKRALILAENMERIGARNVIVTNEDPTGL----------LKTFEQFFDKIVV 171
Query: 172 DAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGI 231
DAPCSG G + A + + D + A ++KL+ A + +LK+ G
Sbjct: 172 DAPCSGEGMFRKDHAATKYWHKDYPNECAA--RQKLILA----------DAMKMLKQGGT 219
Query: 232 LVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGM 269
LVY TC+ + EE+E +I W+L+ +P +ELV GM
Sbjct: 220 LVYSTCTFAPEEDEQIITWLLNEYPYLELVPIKKYSGM 257
>gi|332796458|ref|YP_004457958.1| RNA methylase [Acidianus hospitalis W1]
gi|332694193|gb|AEE93660.1| RNA methylase, NOL1/NOP2/sun family [Acidianus hospitalis W1]
Length = 335
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 123/256 (48%), Gaps = 54/256 (21%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q L S++ + L+ VLDM AAPG K T ++ +MN+ G ++A++KS+ RVT L
Sbjct: 120 IQGLASMVPAYVLNPSSSDTVLDMAAAPGGKTTQLSQIMNNEGLIVAVEKSRLRVTSLLS 179
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
I +L + ++ + D+ ++ SFD+ILLDAPCSG G P +
Sbjct: 180 NISRLGVRNVLLL-----------RSDVRTLEKTTLSFDKILLDAPCSGEGLIPEDQSRK 228
Query: 189 SFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVI 248
+ +LD ++K ++ Q +L+ Y+ LLKK G LVY TCS++ EE+E ++
Sbjct: 229 TKTSLD-ELKRFSFTQLQLIYTAYK-----------LLKKGGELVYSTCSIAPEEDEMIV 276
Query: 249 AWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQ-------------RFGPPLIPT 295
+ + +LGMK + AE+ V RF P
Sbjct: 277 NF------------AIEELGMKAIKISGYPAENGIVEYNGVSFNEEVSNCIRFYP----- 319
Query: 296 DRNTDTIGFFICKLRK 311
T GFFIC L+K
Sbjct: 320 -HKNGTEGFFICHLKK 334
>gi|426225668|ref|XP_004006985.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 isoform 2
[Ovis aries]
Length = 853
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 136/294 (46%), Gaps = 52/294 (17%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+ V DSS+ I P LAGHY L Q
Sbjct: 359 AQALINRGVNLDPLGKWSKTGLVVYDSSVPIGAT-PEYLAGHYMLQGASSMLPVMALAPQ 417
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDMC APG K ++IA LM +TG ++A D + R+ + + +L +++ YD
Sbjct: 418 EHERILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNAIISHYD 477
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANI 203
+ FDR+LLDAPCSG G + + N D+K I A++
Sbjct: 478 GRQFPKVVG-----------GFDRVLLDAPCSGTGV--ISKDPAVKTNKDEKDILRCAHL 524
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
QK+LL + V+ G G LVYCTCS+ VEENE V+ + L + V LV T
Sbjct: 525 QKELLLSAIDSVNASSKTG-------GYLVYCTCSIMVEENEWVVDYALKKR-NVRLVPT 576
Query: 264 LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
G +G + +RF P L T R N D GFFI K +K
Sbjct: 577 GLDFGQEGFT--------RFRERRFHPTLRSTRRFYPHTHNMD--GFFIAKFKK 620
>gi|296487127|tpg|DAA29240.1| TPA: nucleolar protein 1, 120kDa [Bos taurus]
Length = 820
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 136/294 (46%), Gaps = 52/294 (17%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+ V DSS+ I P LAGHY L Q
Sbjct: 326 AQALINRGVNLDPLGKWSKTGLVVYDSSVPIGAT-PEYLAGHYMLQGASSMLPVMALAPQ 384
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDMC APG K ++IA LM +TG ++A D + R+ + + +L +++ YD
Sbjct: 385 EHERILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNAIISHYD 444
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANI 203
+ FDR+LLDAPCSG G + + N D+K I A++
Sbjct: 445 GRQFPKVVG-----------GFDRVLLDAPCSGTGV--ISKDPAVKTNKDEKDILRCAHL 491
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
QK+LL + V+ G G LVYCTCS+ VEENE V+ + L + V LV T
Sbjct: 492 QKELLLSAIDSVNATSKTG-------GYLVYCTCSIMVEENEWVVDYALKKR-NVRLVPT 543
Query: 264 LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
G +G + +RF P L T R N D GFFI K +K
Sbjct: 544 GLDFGQEGFT--------RFRERRFHPTLRSTRRFYPHTHNMD--GFFIAKFKK 587
>gi|440895654|gb|ELR47792.1| Putative ribosomal RNA methyltransferase NOP2 [Bos grunniens mutus]
Length = 823
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 136/294 (46%), Gaps = 52/294 (17%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+ V DSS+ I P LAGHY L Q
Sbjct: 329 AQALINRGVNLDPLGKWSKTGLVVYDSSVPIGAT-PEYLAGHYMLQGASSMLPVMALAPQ 387
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDMC APG K ++IA LM +TG ++A D + R+ + + +L +++ YD
Sbjct: 388 EHERILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNAIISHYD 447
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANI 203
+ FDR+LLDAPCSG G + + N D+K I A++
Sbjct: 448 GRQFPKVVG-----------GFDRVLLDAPCSGTGV--ISKDPAVKTNKDEKDILRCAHL 494
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
QK+LL + V+ G G LVYCTCS+ VEENE V+ + L + V LV T
Sbjct: 495 QKELLLSAIDSVNATSKTG-------GYLVYCTCSIMVEENEWVVDYALKKR-NVRLVPT 546
Query: 264 LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
G +G + +RF P L T R N D GFFI K +K
Sbjct: 547 GLDFGQEGFT--------RFRERRFHPTLRSTRRFYPHTHNMD--GFFIAKFKK 590
>gi|313894854|ref|ZP_07828414.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
oral taxon 137 str. F0430]
gi|312976535|gb|EFR41990.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
oral taxon 137 str. F0430]
Length = 451
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 83/302 (27%), Positives = 135/302 (44%), Gaps = 48/302 (15%)
Query: 11 LWLDRAGFVSVLRLPARQ-RPSLSIYCYALDILFRGVAVEITNVLSQVPNVALDSSMGIL 69
L +DR G + L Q RPS ++ G+ V L + L + +
Sbjct: 196 LRIDREGLLEKLAAAGAQARPSATVP--------DGIVVTSHGTLDAL--APLREGLCQV 245
Query: 70 QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEET 129
Q+ S+L H L PG V+D CAAPG K THIA M + G + A D + ++ ++E
Sbjct: 246 QDESSMLVAHVLGAAPGMTVIDACAAPGGKTTHIAQRMENRGKIYAFDVYEGKIARIENN 305
Query: 130 IKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANS 189
++L + I+T + D+ I + DR+L+DAPCSGFG +A
Sbjct: 306 ARRLGIDIIETWMLDAREIGARC----------AGTADRVLIDAPCSGFGVLRRKPDAR- 354
Query: 190 FLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIA 249
+ +++ + +Q+++L V + G LVY TC++ ENE V+
Sbjct: 355 WRRKPEELGALPKLQQEILAGAAAAV-----------RPGGALVYSTCTMETAENEGVVQ 403
Query: 250 WILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKL 309
L HPE L + A ++ + A++Q F PT+ D GFFI ++
Sbjct: 404 RFLELHPEFVL--------ERAGAFLPVQQTEDAMVQIF-----PTEDGGD--GFFIARM 448
Query: 310 RK 311
++
Sbjct: 449 KR 450
>gi|443478406|ref|ZP_21068164.1| sun protein [Pseudanabaena biceps PCC 7429]
gi|443016313|gb|ELS31003.1| sun protein [Pseudanabaena biceps PCC 7429]
Length = 450
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 79/259 (30%), Positives = 127/259 (49%), Gaps = 37/259 (14%)
Query: 54 LSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTL 113
+SQ+P +Q+ + L + LD QP + V+D CAAPG K THI+ + +TG +
Sbjct: 228 VSQLPK--FKEGWWSVQDASAQLVTYLLDPQPHEIVVDACAAPGGKTTHISDRLKNTGKV 285
Query: 114 IALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDA 173
ALD+ R+ K+E+ +L ++++QT D+ E + + DR+LLD
Sbjct: 286 YALDRLASRLKKVEQNAARLGITNVQTIELDAR----------EFAGIPEGKCDRVLLDV 335
Query: 174 PCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILV 233
PCSG G +A D+ K A Q ++L Q + +K +G++V
Sbjct: 336 PCSGLGTLHRHADARWRQTPDEPYK-LAKTQSEILA-----------QAMQWVKPEGVIV 383
Query: 234 YCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLI 293
Y TC++ ENE VI L HP+ ++V P AH A D+ ++ ++
Sbjct: 384 YSTCTIHPAENEEVIEQFLTHHPDWQIV---PPSAENPAAHF---ASDRGWVK-----VL 432
Query: 294 PTDRNTDTIGFFICKLRKK 312
P + N D GFF+ KL+K+
Sbjct: 433 PHEHNMD--GFFMVKLQKR 449
>gi|431905345|gb|ELK10390.1| Putative ribosomal RNA methyltransferase NOP2 [Pteropus alecto]
Length = 826
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 95/294 (32%), Positives = 136/294 (46%), Gaps = 52/294 (17%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+ V DSS+ I P LAGHY L Q
Sbjct: 338 AQALINRGVNLDPLGKWSKTGLVVYDSSVPIGAT-PEYLAGHYMLQGASSMLPVMALAPQ 396
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDMC APG K ++IA LM +TG ++A D + R+ + + +L +++ YD
Sbjct: 397 EHERILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYD 456
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANI 203
+ FDR+LLDAPCSG G + + N D+K I A++
Sbjct: 457 GRQFPKVVG-----------GFDRVLLDAPCSGTGI--ISKDPAVKTNKDEKDILRCAHL 503
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
QK+LL + V+ G G L+YCTCS+ VEENE V+ + L + V LV T
Sbjct: 504 QKELLLSAIDSVNAASKTG-------GYLIYCTCSIMVEENEWVVDYALKKR-NVRLVPT 555
Query: 264 LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
G +G + +RF P L T R N D GFFI K +K
Sbjct: 556 GLDFGQEGFT--------RFRERRFHPTLRSTRRFYPHTHNMD--GFFIAKFKK 599
>gi|420161006|ref|ZP_14667777.1| tRNA/rRNA methyltransferase [Weissella koreensis KCTC 3621]
gi|394745756|gb|EJF34574.1| tRNA/rRNA methyltransferase [Weissella koreensis KCTC 3621]
Length = 456
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 129/269 (47%), Gaps = 37/269 (13%)
Query: 54 LSQVPNVALDSSMGIL--QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTG 111
+V ++D + G++ Q + L G QP +KVLD+ AAPG K TH+A MN G
Sbjct: 65 FGRVKGHSVDHTTGLIYSQEPSAQLVGEIAHPQPDEKVLDLAAAPGGKTTHLASFMNQKG 124
Query: 112 TLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILL 171
L++ + K R L E +++ + + + ++ E + FDRI+L
Sbjct: 125 LLVSNEIFKKRAQILSENVER----------FGAKNVLVTNHAPAELVPKFAGYFDRIVL 174
Query: 172 DAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGI 231
DAPCSG G +A + ++D + A +Q+++L + + +LK G
Sbjct: 175 DAPCSGEGMFRKDPDAMQYWDVDYPSRC-AKLQREILV-----------EALKMLKSGGE 222
Query: 232 LVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPP 291
L+Y TC+ + EE+E +IAW+L +PE+EL +P KG+ E D P
Sbjct: 223 LIYSTCTFAPEEDEQIIAWLLDSYPELEL---MPIDKPKGVDDGRPEWADG------NPE 273
Query: 292 LIPTDR----NTDTIGFFICKLRKKYGEA 316
L+ T R + D G FI LR K +A
Sbjct: 274 LVKTARLFPHHLDGEGHFIAHLRLKEADA 302
>gi|379719867|ref|YP_005311998.1| hypothetical protein PM3016_1945 [Paenibacillus mucilaginosus 3016]
gi|378568539|gb|AFC28849.1| hypothetical protein PM3016_1945 [Paenibacillus mucilaginosus 3016]
Length = 503
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 96/186 (51%), Gaps = 32/186 (17%)
Query: 81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQT 140
LDVQPG +VLD+CAAPG K T +A + TG + A D RV L +K L+L+ ++
Sbjct: 103 LDVQPGHRVLDLCAAPGGKTTQLAGKLQGTGLVAANDIHSERVKAL---VKNLELNGVRE 159
Query: 141 HVYDSTRINTSSQIDIERMKLQ---KESFDRILLDAPCSGFGQRPMFYNANSFLNL--DK 195
V ++ + KLQ + FDRIL+DAPCSG G MF +
Sbjct: 160 AVV----------LNEDPAKLQEAFRGYFDRILIDAPCSGEG---MFRKEEEMAKAWQED 206
Query: 196 KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRH 255
+ YA++Q+ LL+ Q +LK G LVY TC+ S EENE +IA L H
Sbjct: 207 WTEKYASMQRVLLR-----------QAAVMLKPGGRLVYSTCTFSPEENEQIIAGFLDEH 255
Query: 256 PEVELV 261
P+ E+
Sbjct: 256 PDFEIA 261
>gi|209881801|ref|XP_002142338.1| NOL1/NOP2/sun family protein [Cryptosporidium muris RN66]
gi|209557944|gb|EEA07989.1| NOL1/NOP2/sun family protein [Cryptosporidium muris RN66]
Length = 539
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 92/297 (30%), Positives = 144/297 (48%), Gaps = 43/297 (14%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RG V+ ++V + SS+ I P L+G+Y L Q
Sbjct: 168 AHKLISRGANVDPIGEWTKVGLIVYSSSVPIGA-TPEYLSGYYMIQSASSLIPVMALAPQ 226
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
PG+K+LDM AAPG K T+I LM ++G L A D + R T L + ++ + +
Sbjct: 227 PGEKILDMAAAPGGKTTYIGQLMKNSGILYANDLRRDRCTALIANLHRM-------GICN 279
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYA 201
S IN +D + + DRILLDAPC+G G + P + K++ Y+
Sbjct: 280 SVVIN----MDGKELGKYLPKLDRILLDAPCTGLGIISRDPSVKVKRTI----KELNEYS 331
Query: 202 NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
+QK+LL++ + + D K G +VY TCS+S EENEAV+ +IL + V+LV
Sbjct: 332 LLQKELLKSA---IDMIDANS----KTGGFVVYSTCSISFEENEAVVDYIL-KVRNVKLV 383
Query: 262 QTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKKYGEAPE 318
++G GL+ K E + ++ + P N D GFF+ K +K + P+
Sbjct: 384 PLGIEIGSPGLS-KFRENRLNPTISKYSRRIYPHKNNMD--GFFVAKFKKISNDIPK 437
>gi|323339816|ref|ZP_08080085.1| NOL1/NOP2/sun family protein [Lactobacillus ruminis ATCC 25644]
gi|417974113|ref|ZP_12614937.1| 23S rRNA m(5)C methyltransferase [Lactobacillus ruminis ATCC 25644]
gi|323092689|gb|EFZ35292.1| NOL1/NOP2/sun family protein [Lactobacillus ruminis ATCC 25644]
gi|346329568|gb|EGX97863.1| 23S rRNA m(5)C methyltransferase [Lactobacillus ruminis ATCC 25644]
Length = 458
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 109/200 (54%), Gaps = 22/200 (11%)
Query: 70 QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEET 129
Q+L ++ G +PG+K+LD+CAAPG K +H+A LMN+ G L++ + ++ R L E
Sbjct: 80 QDLSAMYVGEVCGPRPGEKILDLCAAPGGKSSHLASLMNNEGLLVSNEINRKRALILAEN 139
Query: 130 IKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANS 189
++++ ++ D T + +K ++ FD+I++DAPCSG G + A
Sbjct: 140 MERIGARNVIVTNEDPTGL----------LKTFEQFFDKIVVDAPCSGEGMFRKDHAATK 189
Query: 190 FLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIA 249
+ + D + A ++KL+ A + +LK+ G LVY TC+ + EE+E +I
Sbjct: 190 YWHKDYPNECAA--RQKLILA----------DAMKMLKQGGTLVYSTCTFAPEEDEQIIT 237
Query: 250 WILHRHPEVELVQTLPQLGM 269
W+L+ +P +ELV GM
Sbjct: 238 WLLNEYPYLELVPIKKYSGM 257
>gi|426225666|ref|XP_004006984.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 isoform 1
[Ovis aries]
Length = 820
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 136/294 (46%), Gaps = 52/294 (17%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+ V DSS+ I P LAGHY L Q
Sbjct: 326 AQALINRGVNLDPLGKWSKTGLVVYDSSVPIGAT-PEYLAGHYMLQGASSMLPVMALAPQ 384
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDMC APG K ++IA LM +TG ++A D + R+ + + +L +++ YD
Sbjct: 385 EHERILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNAIISHYD 444
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANI 203
+ FDR+LLDAPCSG G + + N D+K I A++
Sbjct: 445 GRQFPKVVG-----------GFDRVLLDAPCSGTGV--ISKDPAVKTNKDEKDILRCAHL 491
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
QK+LL + V+ G G LVYCTCS+ VEENE V+ + L + V LV T
Sbjct: 492 QKELLLSAIDSVNASSKTG-------GYLVYCTCSIMVEENEWVVDYALKKR-NVRLVPT 543
Query: 264 LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
G +G + +RF P L T R N D GFFI K +K
Sbjct: 544 GLDFGQEGFT--------RFRERRFHPTLRSTRRFYPHTHNMD--GFFIAKFKK 587
>gi|304384751|ref|ZP_07367097.1| ribosomal RNA small subunit methyltransferase B [Pediococcus
acidilactici DSM 20284]
gi|304328945|gb|EFL96165.1| ribosomal RNA small subunit methyltransferase B [Pediococcus
acidilactici DSM 20284]
Length = 444
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 118/247 (47%), Gaps = 42/247 (17%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
I Q+ ++L G + + GQKVLD CAAPG K T +A + G +IA D + R ++
Sbjct: 235 IAQDESAMLVGETMQLATGQKVLDACAAPGGKTTQLAQKVGPDGQVIAWDIYESRTRLIQ 294
Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMF 184
+ +++ L++I T V+D+T ++ KE FDRIL+DAPCSG G ++P
Sbjct: 295 QNARRMHLTNIVTEVHDAT--TPCPEL--------KEEFDRILVDAPCSGIGLLRRKP-- 342
Query: 185 YNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
+L K +Q +L V +LK GIL Y TC++ +EN
Sbjct: 343 --ETRYLKSKKDSSDLHRVQLDILDNV-----------ASMLKVGGILTYSTCTMLRKEN 389
Query: 245 EAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
+ I L +HPE EL++T +K DL + P D +D GF
Sbjct: 390 QMTIDEFLTQHPEFELLKTQTDKKVKA-DRTDLSLN-----------IYPDDFGSD--GF 435
Query: 305 FICKLRK 311
FI ++K
Sbjct: 436 FIANMKK 442
>gi|448448406|ref|ZP_21591219.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum litoreum
JCM 13561]
gi|445814822|gb|EMA64780.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum litoreum
JCM 13561]
Length = 309
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 122/249 (48%), Gaps = 31/249 (12%)
Query: 74 SILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKL 133
S+L LD +PG++V D CAAPG+K T IA M+D GT++A D + R++ L ++L
Sbjct: 87 SVLPTLALDPRPGERVWDACAAPGSKTTQIADAMDDEGTVVANDNNLGRLSALRHNAERL 146
Query: 134 QLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNL 193
+++ D+ +T L + FDR L+DAPCS G + L
Sbjct: 147 GITNAIVTNQDARNFSTK--------PLAFDEFDRALVDAPCSCEGTCRKNPDVLDQWTL 198
Query: 194 DKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILH 253
D + + A IQK +L + + + G++VY TC+ + EENEAV+ +L
Sbjct: 199 D-HVHAVAGIQKGVLA-----------RAVQATRPGGVVVYSTCTFAPEENEAVLDHVLD 246
Query: 254 RHPEVELVQ-TLPQLGMKGLAHKDLEAEDQAVM--QRFGPPLIPTDRNTDTIGFFICKLR 310
+ ELV+ LP G+ D EA D++V +R P DT GFF KLR
Sbjct: 247 EE-DCELVEFDLPLDTDPGVTQWDGEAYDESVTRAKRVYP------HRNDTGGFFCAKLR 299
Query: 311 KKYGEAPEI 319
GE E+
Sbjct: 300 VG-GEETEV 307
>gi|427439948|ref|ZP_18924477.1| ribosomal RNA small subunit methyltransferase B [Pediococcus lolii
NGRI 0510Q]
gi|425787780|dbj|GAC45265.1| ribosomal RNA small subunit methyltransferase B [Pediococcus lolii
NGRI 0510Q]
Length = 441
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 116/247 (46%), Gaps = 42/247 (17%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
I Q+ ++L G + + GQKVLD CAAPG K T +A + G +IA D + R ++
Sbjct: 232 IAQDESAMLVGETMQLATGQKVLDACAAPGGKTTQLAQKVGPDGQVIAWDIYESRTRLIQ 291
Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMF 184
+ +++ L++I T V+D+T KE FDRIL+DAPCSG G ++P
Sbjct: 292 QNARRMHLTNIVTEVHDATAPCPEL----------KEEFDRILVDAPCSGIGLLRRKP-- 339
Query: 185 YNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
+L K +Q +L V +LK GIL Y TC++ +EN
Sbjct: 340 --ETRYLKSKKDSSDLHRVQLDILDNV-----------ASMLKVGGILTYSTCTMLRKEN 386
Query: 245 EAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
+ I L +HPE EL++T +K DL + P D +D GF
Sbjct: 387 QMTIDEFLTQHPEFELLKTQTDKKVKA-DRTDLSLN-----------IYPDDFGSD--GF 432
Query: 305 FICKLRK 311
FI ++K
Sbjct: 433 FIANMKK 439
>gi|227544379|ref|ZP_03974428.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus reuteri
CF48-3A]
gi|338202534|ref|YP_004648679.1| RNA methyltransferase Sun [Lactobacillus reuteri SD2112]
gi|227185642|gb|EEI65713.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus reuteri
CF48-3A]
gi|336447774|gb|AEI56389.1| RNA methyltransferase Sun [Lactobacillus reuteri SD2112]
Length = 449
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 120/249 (48%), Gaps = 45/249 (18%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIA-LLMNDTGTLIALDKSKPRVTKLE 127
+Q+ ++LA + ++PG KVLD CAAPG K IA L N+ G + ALD + +V +E
Sbjct: 238 IQDESAMLAVESMHIEPGDKVLDACAAPGGKTVQIAEALTNEDGHVDALDIHQHKVRLIE 297
Query: 128 ETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG--QRPMF 184
+ ++L + + H D+ ++ ESFD++L+DAPCSG G +R
Sbjct: 298 KNARRLGVEKRVTAHALDAREVD---------QLFDDESFDKVLVDAPCSGIGLLRRKPE 348
Query: 185 YNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
LN K++ IQ +L A+ V KK GI+ Y TC++ +EN
Sbjct: 349 IRYTKTLNDSKQLHK---IQLAILNAIAAKV-----------KKGGIITYSTCTILQQEN 394
Query: 245 EAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPL--IPTDRNTDTI 302
+ + L HPE ELV+T +K R P L +P+D ++D
Sbjct: 395 DDTVQAFLAEHPEFELVKTTTARKVKD--------------NRHSPTLTILPSDFDSD-- 438
Query: 303 GFFICKLRK 311
GFF+ L+K
Sbjct: 439 GFFVSSLKK 447
>gi|419653384|ref|ZP_14184359.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
2008-872]
gi|419680683|ref|ZP_14209539.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
140-16]
gi|419686905|ref|ZP_14215324.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
1798]
gi|419692400|ref|ZP_14220489.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
1928]
gi|380632632|gb|EIB50695.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
2008-872]
gi|380659861|gb|EIB75822.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
140-16]
gi|380663323|gb|EIB78971.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
1798]
gi|380669809|gb|EIB85079.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
1928]
Length = 292
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 89/280 (31%), Positives = 137/280 (48%), Gaps = 44/280 (15%)
Query: 32 LSIYCYALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLD 91
++ YCY D + + LS + A + + +QN S L L+V+ GQ VLD
Sbjct: 55 INAYCYLFDAKDKAI-------LSSMK--AFNEAHFYIQNYSSYLCALNLEVKAGQSVLD 105
Query: 92 MCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTS 151
MCAAPG K ++A M +TG L + S+ R L++ +K +++ + + D I
Sbjct: 106 MCAAPGGKSINLANFMQNTGYLACNEMSRDRFFILQKNLKNYGVNA-KVFMKDGKNIGNL 164
Query: 152 SQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAV 211
+ FD+ILLDAPCS F + F S+ K+IK+ A IQKKLL +
Sbjct: 165 CPL----------KFDKILLDAPCSTFA-KIGFDLEKSY----KEIKNIAKIQKKLLHS- 208
Query: 212 YRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKG 271
+ LK G LVY TC+ + EENE VI L ++EL+ + ++
Sbjct: 209 ----------ALKALKIGGELVYSTCTFTKEENEEVIENALKSEFKLELL----DIDLEN 254
Query: 272 LAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
+ K ++E+ A + + ++P+ D GFFI KLRK
Sbjct: 255 VEAKAGQSEEFAEISK-CRRILPS---LDYDGFFIAKLRK 290
>gi|156121159|ref|NP_001095727.1| putative ribosomal RNA methyltransferase NOP2 [Bos taurus]
gi|151554602|gb|AAI49979.1| NOP2 protein [Bos taurus]
gi|154425735|gb|AAI51442.1| NOP2 protein [Bos taurus]
Length = 820
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 136/294 (46%), Gaps = 52/294 (17%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+ V DSS+ I P LAGHY L Q
Sbjct: 326 AQALINRGVNLDPLGKWSKTGLVVYDSSVPIGAT-PEYLAGHYMLQGASSMLPVMALAPQ 384
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDMC APG K ++IA LM +TG ++A D + R+ + + +L +++ YD
Sbjct: 385 EHERILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNAIISHYD 444
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANI 203
+ FDR+LLDAPCSG G + + N D+K I A++
Sbjct: 445 GRQFPKVVG-----------GFDRVLLDAPCSGTGV--ISKDPAVKTNKDEKDILRCAHL 491
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
QK+LL + V+ G G LVYCTCS+ VEENE V+ + L + V LV T
Sbjct: 492 QKELLLSAIDSVNATSKTG-------GYLVYCTCSIMVEENEWVVDYALKKR-NVRLVPT 543
Query: 264 LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
G +G + +RF P L T R N D GFFI K +K
Sbjct: 544 GLDFGQEGFT--------RFRERRFHPTLRSTRRFYPHTHNMD--GFFIAKFKK 587
>gi|323331975|gb|EGA73387.1| Nop2p [Saccharomyces cerevisiae AWRI796]
Length = 485
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 132/296 (44%), Gaps = 55/296 (18%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ ++V DS + I P LAGHY LD
Sbjct: 141 AQTLVNRGVNLQPIGSWTKVGLQIFDSQVPIGAT-PEYLAGHYILQAASSFLPVIALDPH 199
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDM AAPG K T+I+ +M +TG + A D +K R L I +L ++ YD
Sbjct: 200 ENERILDMAAAPGGKTTYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNTIVCNYD 259
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANI- 203
+ FDRILLDAPCSG G + + + + K + I
Sbjct: 260 AREFPKVIG-----------GFDRILLDAPCSGTG----VIGKDQSVKVSRTEKDFIQIP 304
Query: 204 --QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
QK+LL + V G G++VY TCS++VEE+EAVI + L + P V+LV
Sbjct: 305 HLQKQLLLSAIDSVDCNSKHG-------GVIVYSTCSVAVEEDEAVIDYALRKRPNVKLV 357
Query: 262 QTLPQLGMKGLAHKDLEAEDQAVMQRFGPPL------IPTDRNTDTIGFFICKLRK 311
T +G EA ++F P + P N D GFF+ K +K
Sbjct: 358 DTGLAIGK--------EAFTSYRGKKFHPSVKLARRYYPHTYNVD--GFFVAKFQK 403
>gi|350418300|ref|XP_003491816.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
[Bombus impatiens]
Length = 604
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 85/259 (32%), Positives = 123/259 (47%), Gaps = 51/259 (19%)
Query: 73 PSILAGHY-------------LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKS 119
P LAGHY LD + ++VLDMCAAPG K +HIA LM +TG L + D +
Sbjct: 360 PEYLAGHYILQGASSFLPVMALDPKENERVLDMCAAPGGKSSHIAALMKNTGVLFSNDAN 419
Query: 120 KPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG 179
+ R+ + +L +++ YD ++ T + FDR+LLDAPC+G G
Sbjct: 420 EERIKAVVGNFHRLGITNSIVCTYDGRKLPTVIK-----------GFDRVLLDAPCTGTG 468
Query: 180 QRPMFYNANSFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS 238
+ + + N D+ I+ +QK+LL A + G GI+VY TCS
Sbjct: 469 --VVSKDPSVKTNKDEVDIQRCCTLQKELLLAAIDCANARSESG-------GIIVYSTCS 519
Query: 239 LSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR- 297
+ EENE VI + L + +V+L+ T + G +G RF P L T R
Sbjct: 520 ILPEENEWVIDFALKKR-DVKLIPTGLEFGAEGFT--------SYRQYRFHPSLKLTKRF 570
Query: 298 -----NTDTIGFFICKLRK 311
N D GFF+ KL+K
Sbjct: 571 YPHVHNMD--GFFVAKLKK 587
>gi|332249235|ref|XP_003273769.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 isoform 2
[Nomascus leucogenys]
Length = 809
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 95/294 (32%), Positives = 136/294 (46%), Gaps = 52/294 (17%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+ V DSS+ I P LAGHY L Q
Sbjct: 322 AQALINRGVNLDPLGKWSKTGLVVYDSSVPIGAT-PEYLAGHYMLQGASSMLPVMALAPQ 380
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDMC APG K +++A LM +TG ++A D + R+ + + +L +++ YD
Sbjct: 381 EHERILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTVISHYD 440
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANI 203
+ FDR+LLDAPCSG G + + N D+K I A++
Sbjct: 441 GRQFPKVVG-----------GFDRVLLDAPCSGTGV--ISKDPAVKTNKDEKDILRCAHL 487
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
QK+LL + V+ G G LVYCTCS+ VEENE V+ + L + V LV T
Sbjct: 488 QKELLLSAIDSVNATSKTG-------GYLVYCTCSIMVEENEWVVDYALKKR-NVRLVPT 539
Query: 264 LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
G +G + +RF P L T R N D GFFI K +K
Sbjct: 540 GLDFGQEGFT--------RFRERRFHPTLRSTRRFYPHTHNMD--GFFIAKFKK 583
>gi|65321192|ref|ZP_00394151.1| COG0144: tRNA and rRNA cytosine-C5-methylases [Bacillus anthracis
str. A2012]
Length = 444
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 120/247 (48%), Gaps = 38/247 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G +LD CAAPG K THIA + TG +++LD +V +++
Sbjct: 232 IQDESSMLVARALEPDEGDVILDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQ 291
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
++L L +++T D+ ++ E FD+IL+DAPCSGFG ++P
Sbjct: 292 QAERLXLENVETKALDARKVQEH---------FANEXFDKILVDAPCSGFGVIRRKP--- 339
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
D K+ ++L ++ +F L + PLLK+ G LVY TC++ ENE
Sbjct: 340 --------DIKLGKDKGDSERL--SMIQFAIL--EKXAPLLKQGGRLVYSTCTIEKIENE 387
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
VI L HPE E T+ + + L+ E + Q + F T GF+
Sbjct: 388 QVIERFLQEHPEFEWDTTIKERMPEKLSPYMDEGQVQILPHYFA-----------TDGFY 436
Query: 306 ICKLRKK 312
I LRKK
Sbjct: 437 IACLRKK 443
>gi|448478964|ref|ZP_21603970.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum arcis JCM
13916]
gi|445822794|gb|EMA72556.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum arcis JCM
13916]
Length = 309
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 122/249 (48%), Gaps = 31/249 (12%)
Query: 74 SILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKL 133
S+L LD +PG++V D CAAPG+K T IA M+D GT++A D + R++ L ++L
Sbjct: 87 SVLPTLALDPRPGERVWDACAAPGSKTTQIADAMDDEGTVVANDNNLGRLSALRHNAERL 146
Query: 134 QLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNL 193
+++ D+ +T L + FDR L+DAPCS G + L
Sbjct: 147 GITNAIVTNQDARNFSTK--------PLAFDEFDRALVDAPCSCEGTCRKNPDVLDQWTL 198
Query: 194 DKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILH 253
D + + A IQK +L + + + G++VY TC+ + EENEAV+ +L
Sbjct: 199 D-HVHAVAGIQKGVLA-----------RAVQATRPGGVVVYSTCTFAPEENEAVLDHVLD 246
Query: 254 RHPEVELVQ-TLPQLGMKGLAHKDLEAEDQAVM--QRFGPPLIPTDRNTDTIGFFICKLR 310
+ ELV+ LP G+ D EA D++V +R P DT GFF KLR
Sbjct: 247 EE-DCELVEFDLPLDTDPGVTQWDGEAYDESVTRAKRVYP------HRNDTGGFFCAKLR 299
Query: 311 KKYGEAPEI 319
GE E+
Sbjct: 300 VG-GEETEV 307
>gi|156383674|ref|XP_001632958.1| predicted protein [Nematostella vectensis]
gi|156220021|gb|EDO40895.1| predicted protein [Nematostella vectensis]
Length = 415
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 97/302 (32%), Positives = 136/302 (45%), Gaps = 56/302 (18%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+V V DSS+ I P LAGHY L Q
Sbjct: 143 AQALINRGVNLDPVGKWSKVGLVVYDSSVPIGAT-PEYLAGHYMIQGSSSMLPVMALAPQ 201
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
++VLDMCAAPG K T++A LM +TG ++A D K R L I +L +++ YD
Sbjct: 202 EKERVLDMCAAPGGKTTYLAALMKNTGIVVANDAKKERTKALVANIHRLGVTNTVVCNYD 261
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYA 201
FDR LLDAPCSG G + P + +K I +
Sbjct: 262 GRAFPKVMG-----------GFDRTLLDAPCSGTGVISKDPSVKTNKT----EKDILRCS 306
Query: 202 NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
++QK+L+ A V G G +VY TCS+ VEE+E V+ + L + V+LV
Sbjct: 307 HVQKELILAAIDSVDAKSPTG-------GYIVYSTCSIMVEEDEWVVDYALSKR-HVKLV 358
Query: 262 QTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRKKYGE 315
T G +G + + + F P L T R N D GFF+ KL+K +
Sbjct: 359 PTGLDFGREGFS--------KFRGRHFHPSLKLTRRFYAHAHNMD--GFFVAKLKKFSNK 408
Query: 316 AP 317
P
Sbjct: 409 IP 410
>gi|218562286|ref|YP_002344065.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
NCTC 11168 = ATCC 700819]
gi|403055409|ref|YP_006632814.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
NCTC 11168-BN148]
gi|112359992|emb|CAL34781.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
NCTC 11168 = ATCC 700819]
gi|401781061|emb|CCK66758.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
NCTC 11168-BN148]
Length = 279
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 137/280 (48%), Gaps = 44/280 (15%)
Query: 32 LSIYCYALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLD 91
+++YCY D + + LS + A + + +QN S L L+V+ GQ VLD
Sbjct: 42 INVYCYLFDAKDKAI-------LSSMK--AFNEAHFYIQNYSSYLCALNLEVKAGQSVLD 92
Query: 92 MCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTS 151
MCAAPG K ++A M +TG L + S+ R L++ +K +++ + + D I
Sbjct: 93 MCAAPGGKSINLANFMQNTGYLACNEMSRDRFFILQKNLKNYGVNA-KVFMKDGKNIGNL 151
Query: 152 SQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAV 211
+ FD+ILLDAPCS F + F S+ K+IK+ A QKKLL +
Sbjct: 152 CPL----------KFDKILLDAPCSTFA-KIGFDLEKSY----KEIKNIAKTQKKLLHS- 195
Query: 212 YRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKG 271
+ LK G LVY TC+ + EENE VI L ++EL+ + ++
Sbjct: 196 ----------ALKALKIGGELVYSTCTFTKEENEEVIENALKSEFKLELL----DIDLEN 241
Query: 272 LAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
+ K ++E+ A + + ++P+ D GFFI KLRK
Sbjct: 242 VEAKAGQSEEFAEISK-CRRILPS---LDYDGFFIAKLRK 277
>gi|329120994|ref|ZP_08249625.1| RNA methyltransferase Sun [Dialister micraerophilus DSM 19965]
gi|327471156|gb|EGF16610.1| RNA methyltransferase Sun [Dialister micraerophilus DSM 19965]
Length = 448
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 119/238 (50%), Gaps = 44/238 (18%)
Query: 78 GHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS 137
+ LD +P +KVLDMCAAPG+K T IA LM++ G++ A D ++ +EE I +L +
Sbjct: 252 AYALDPKPYEKVLDMCAAPGSKTTQIAQLMDNKGSIDAWDLYPHKIKLIEENINRLGVKI 311
Query: 138 IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSG---FGQRPMFYNANSFLNLD 194
+ + D+T++ + +D++LLDAPCSG G +P + +
Sbjct: 312 VTPKLQDATKL----------LPTLTGQYDKVLLDAPCSGLGVLGHKPEL----RWRRTE 357
Query: 195 KKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHR 254
+ I+S + QK LL+ +V KK G LVY TC+L++ ENE ++ W L++
Sbjct: 358 ETIESLISTQKDLLKCASTYV-----------KKGGTLVYSTCTLNINENEKIVDWFLNQ 406
Query: 255 HPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKK 312
E L +A D+ + ++ + P + +D GFFI K +++
Sbjct: 407 KKEFYL---------DSIAVNDIINSENGMLTLW-PDTLKSD------GFFIAKFKRR 448
>gi|116181006|ref|XP_001220352.1| S-adenosylmethionine-dependent methyltransferase superfamily
domain-containing protein [Chaetomium globosum CBS
148.51]
gi|88185428|gb|EAQ92896.1| hypothetical protein CHGG_01131 [Chaetomium globosum CBS 148.51]
Length = 722
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 95/294 (32%), Positives = 137/294 (46%), Gaps = 55/294 (18%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +S++ L P LAGHY L Q +
Sbjct: 326 LINRGVTLEPVGKWSKVGLQVFESTV-PLGATPEYLAGHYILQAASSFLPVMALCPQENE 384
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+ LDM AAPG K TH++ LM +TG + A D SK R L I +L ++ YD+
Sbjct: 385 RCLDMAAAPGGKTTHMSALMKNTGVVFANDPSKSRAKGLIGNIHRLGARNVIVCNYDAR- 443
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANIQKK 206
+ R+ FDR+LLDAPCSG G + + + N D+K + QK+
Sbjct: 444 -------EFPRV---MGGFDRVLLDAPCSGTGV--IAKDPSVKTNRDEKDFIQLPHTQKQ 491
Query: 207 LLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN--EAVIAWILHRHPEVELVQTL 264
LL A V+ G G +VY TCS+++EEN E V+A+ L R P V+LV+T
Sbjct: 492 LLLAAIDSVNHASKTG-------GYVVYSTCSVAIEENFSEQVVAYALSRRPNVKLVETG 544
Query: 265 PQLGMKGLA-------HKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
G +G H L+ + +R+ P L D GFF+ K +K
Sbjct: 545 LPFGKEGFTSYMGKAFHPSLK-----LTRRYYPHLYNVD------GFFVAKFQK 587
>gi|431600935|ref|ZP_19522420.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1861]
gi|430590092|gb|ELB28177.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1861]
Length = 452
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 119/247 (48%), Gaps = 38/247 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDT--GTLIALDKSKPRVTKL 126
+Q+ S+L + ++P VLD CAAPG K THIA ++ + G +IALD + +V +
Sbjct: 241 IQDESSMLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDPSCGGEVIALDVHEHKVKLI 300
Query: 127 EETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFY 185
EE +L +SS + D+ ++ + + E FDRIL+DAPCSG G
Sbjct: 301 EENATRLGVSSAVYAQKMDAREVSK---------QFEPEQFDRILVDAPCSGLG----LL 347
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ K+ AN+ K L+ + P LK GIL Y TC++ EEN+
Sbjct: 348 RRKPDIRYKKQSDELANLPKIQLEILESCA--------PALKSSGILTYSTCTILKEENQ 399
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
V++ L HP+ E + L ++ +++++ L P TD GFF
Sbjct: 400 DVVSAFLETHPDFERIDVLTDPMLQS-----------SIVEKM-LTLYPHQFYTD--GFF 445
Query: 306 ICKLRKK 312
IC LRKK
Sbjct: 446 ICCLRKK 452
>gi|82596191|ref|XP_726160.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23481450|gb|EAA17725.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 647
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 84/273 (30%), Positives = 130/273 (47%), Gaps = 53/273 (19%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
I+Q+ S++ L+V+ + VLDMCAAPG K T I + + G + A D +K R +E
Sbjct: 311 IIQSSSSLIPVLELNVKENELVLDMCAAPGGKCTFICTIQKNKGIVYANDINKLRCKAIE 370
Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNA 187
++ ++++ +DS +IN K K FD+ILLDAPCSG G + N
Sbjct: 371 AHAARMGINNLIVTSFDSLKIN----------KYFKFKFDKILLDAPCSGTG--VVNKNK 418
Query: 188 NSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
N+ K+I+ A Q+KLL I L+K GI++Y TCS++VEENE V
Sbjct: 419 NARRKTIKEIRDLAQKQRKLLN-----------NAIDLVKNGGIVIYSTCSITVEENEQV 467
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I +IL + +V L+ +G G+ H ++F + +C
Sbjct: 468 INYILKKR-DVNLLPIDINIGDPGITH--------YRKKQFSSKV------------SLC 506
Query: 308 KLRKKYGEAPEIYIHPHLNDCIVIGPLLKLSQS 340
K IY+H H +D + L+K S +
Sbjct: 507 K---------RIYLHKHNHDNFFVAKLVKRSNA 530
>gi|255721331|ref|XP_002545600.1| nucleolar protein NOP2 [Candida tropicalis MYA-3404]
gi|240136089|gb|EER35642.1| nucleolar protein NOP2 [Candida tropicalis MYA-3404]
Length = 623
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 118/261 (45%), Gaps = 54/261 (20%)
Query: 73 PSILAGHY-------------LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKS 119
P LAGHY L+ Q +++LDM AAPG K T+I+ LM +TG + A D +
Sbjct: 329 PEYLAGHYILQAASSFLPVMALEPQENERILDMAAAPGGKTTYISALMKNTGCVFANDAN 388
Query: 120 KPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG 179
K R L I +L + YD+ FDR+LLDAPCSG G
Sbjct: 389 KARTKSLIANIHRLGCKNTIVCNYDAREFPKVIG-----------GFDRVLLDAPCSGTG 437
Query: 180 QRPMFYNANSFLNLDKKIKSYANI---QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT 236
++ + + + K + I QK+LL + V G G++VY T
Sbjct: 438 ----VIAKDASVKVSRTEKDFMQIPHLQKQLLLSAIDSVDANSPTG-------GVIVYST 486
Query: 237 CSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTD 296
CS++V+ENEAV+ + L + P V+LV T +G +G + F P + T
Sbjct: 487 CSIAVDENEAVVDYALRKRPNVKLVDTGLTIGKEGFT--------SYRGKHFNPKIALTR 538
Query: 297 R------NTDTIGFFICKLRK 311
R N D GF++ K +K
Sbjct: 539 RYYPHTYNVD--GFYVAKFKK 557
>gi|229162801|ref|ZP_04290758.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
R309803]
gi|228620683|gb|EEK77552.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
R309803]
Length = 360
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 118/245 (48%), Gaps = 34/245 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L+ G VLD CAAPG K THIA + TG +++LD +V +++
Sbjct: 148 IQDESSMLVARALEPNEGDVVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQ 207
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
+L L +++T D+ ++ E+FD+IL+DAPCSGFG + +
Sbjct: 208 QADRLGLENVETKALDARKVQEH---------FANETFDKILVDAPCSGFG--VIRRKPD 256
Query: 189 SFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
L DK + + IQ +L+ + PLLK+ G LVY TC++ ENE V
Sbjct: 257 IKLGKDKGDSERLSTIQLAILEKIA-----------PLLKQGGRLVYSTCTIEKIENEQV 305
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I L +PE E T+ + + L+ E + Q + F T GF+I
Sbjct: 306 IERFLQENPEFEWDTTIKERMPEKLSPYIDEGQVQILPHYFA-----------TDGFYIA 354
Query: 308 KLRKK 312
LRKK
Sbjct: 355 CLRKK 359
>gi|148544395|ref|YP_001271765.1| sun protein [Lactobacillus reuteri DSM 20016]
gi|184153759|ref|YP_001842100.1| rRNA methylase [Lactobacillus reuteri JCM 1112]
gi|227363180|ref|ZP_03847314.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus reuteri
MM2-3]
gi|325682715|ref|ZP_08162231.1| RNA methyltransferase Sun [Lactobacillus reuteri MM4-1A]
gi|148531429|gb|ABQ83428.1| sun protein [Lactobacillus reuteri DSM 20016]
gi|183225103|dbj|BAG25620.1| rRNA methylase [Lactobacillus reuteri JCM 1112]
gi|227071786|gb|EEI10075.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus reuteri
MM2-3]
gi|324977065|gb|EGC14016.1| RNA methyltransferase Sun [Lactobacillus reuteri MM4-1A]
Length = 449
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 120/249 (48%), Gaps = 45/249 (18%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIA-LLMNDTGTLIALDKSKPRVTKLE 127
+Q+ ++LA + ++PG KVLD CAAPG K IA L ++ G + ALD + +V +E
Sbjct: 238 IQDESAMLAVESMHIEPGDKVLDACAAPGGKTVQIAETLADEDGHVDALDIHQHKVRLIE 297
Query: 128 ETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG--QRPMF 184
+ ++L + + H D+ ++ ESFD+IL+DAPCSG G +R
Sbjct: 298 KNARRLGVEKRVTAHALDAREVD---------QLFDDESFDKILVDAPCSGIGLLRRKPE 348
Query: 185 YNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
LN K++ IQ +L AV V KK GI+ Y TC++ +EN
Sbjct: 349 IRYTKTLNDSKQLHK---IQLAILNAVAAKV-----------KKGGIITYSTCTILRQEN 394
Query: 245 EAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPL--IPTDRNTDTI 302
+ + L HPE ELV+T +K R P L +P+D ++D
Sbjct: 395 DDTVQAFLAEHPEFELVKTTTARKVKD--------------NRHSPTLTILPSDFDSD-- 438
Query: 303 GFFICKLRK 311
GFFI L+K
Sbjct: 439 GFFISSLKK 447
>gi|409095647|ref|ZP_11215671.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus zilligii AN1]
Length = 309
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 88/258 (34%), Positives = 131/258 (50%), Gaps = 50/258 (19%)
Query: 64 SSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRV 123
S + +Q S+ L+ +PG+ V DM AAPG K +++A LM + G + A D + R
Sbjct: 91 SGLLYIQEASSMYPPVALEPKPGETVADMAAAPGGKTSYLAQLMENKGIIYAFDVGEDR- 149
Query: 124 TKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPM 183
L+ET +L LS + +T + SS + IE + ++ FD+ILLDAPC+G G +
Sbjct: 150 --LKET--RLNLSRLGV---TNTVLFHSSSLHIEELGVE---FDKILLDAPCTGSGT--I 197
Query: 184 FYNANSFLNLD-KKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVE 242
N N + +K +Q KLL+ +G+ +LK+ GILVY TCSL E
Sbjct: 198 HKNPERKANRTMEDVKFCQGLQMKLLE-----------KGLSVLKRGGILVYSTCSLEPE 246
Query: 243 ENEAVIAWILH---------RHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLI 293
ENE VI W+L RH E L + +G+ +E+ A +RF P
Sbjct: 247 ENEFVIQWVLDNFEVELLPLRHGEPALTRPF-GIGL---------SEEIAKARRFYP--- 293
Query: 294 PTDRNTDTIGFFICKLRK 311
DR+ T GFF+ K++K
Sbjct: 294 --DRH-GTSGFFVAKIKK 308
>gi|441670400|ref|XP_004092200.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 [Nomascus
leucogenys]
Length = 813
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 95/294 (32%), Positives = 136/294 (46%), Gaps = 52/294 (17%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+ V DSS+ I P LAGHY L Q
Sbjct: 326 AQALINRGVNLDPLGKWSKTGLVVYDSSVPIGAT-PEYLAGHYMLQGASSMLPVMALAPQ 384
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDMC APG K +++A LM +TG ++A D + R+ + + +L +++ YD
Sbjct: 385 EHERILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTVISHYD 444
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANI 203
+ FDR+LLDAPCSG G + + N D+K I A++
Sbjct: 445 GRQFPKVVG-----------GFDRVLLDAPCSGTGV--ISKDPAVKTNKDEKDILRCAHL 491
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
QK+LL + V+ G G LVYCTCS+ VEENE V+ + L + V LV T
Sbjct: 492 QKELLLSAIDSVNATSKTG-------GYLVYCTCSIMVEENEWVVDYALKKR-NVRLVPT 543
Query: 264 LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
G +G + +RF P L T R N D GFFI K +K
Sbjct: 544 GLDFGQEGFT--------RFRERRFHPTLRSTRRFYPHTHNMD--GFFIAKFKK 587
>gi|345304018|ref|YP_004825920.1| RNA methylase, NOL1/NOP2/sun family [Rhodothermus marinus
SG0.5JP17-172]
gi|345113251|gb|AEN74083.1| RNA methylase, NOL1/NOP2/sun family [Rhodothermus marinus
SG0.5JP17-172]
Length = 321
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 126/250 (50%), Gaps = 37/250 (14%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+L S+L L +P +VLD+CAAPG+K +A LM G + A++ +PR +L+
Sbjct: 93 VQDLASMLPPLVLAPEPDARVLDLCAAPGSKTLQLACLMQGRGEIAAVEVVRPRFYRLKA 152
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
++ +++ ++ D TR+ + + E FD +L+DAPCS G R + +
Sbjct: 153 NVQAYGAPNVRLYLQDGTRVG----------RYRPEFFDYVLVDAPCSSEG-RFHLSDPD 201
Query: 189 SFLNLD-KKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
+F +KI+ A Q +LL + + L+ G+LVY TC+++ EENEAV
Sbjct: 202 TFAYWSLRKIREMARKQYRLLVS-----------AVQSLRPGGVLVYATCTMAPEENEAV 250
Query: 248 IAWILHRHPEVELVQTLP-----QL-GMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDT 301
+ +L V V+ L QL G++ + E R ++PT T+
Sbjct: 251 LDRLLRTFDGVLTVEPLDLPVSNQLPGLESWEGRSFHPE-----LRHARRILPT---TEM 302
Query: 302 IGFFICKLRK 311
GFF+C+LRK
Sbjct: 303 EGFFLCRLRK 312
>gi|421894377|ref|ZP_16324866.1| ribosomal RNA small subunit methyltransferase B [Pediococcus
pentosaceus IE-3]
gi|385272681|emb|CCG90238.1| ribosomal RNA small subunit methyltransferase B [Pediococcus
pentosaceus IE-3]
Length = 444
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 122/246 (49%), Gaps = 42/246 (17%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ ++L + ++ GQKVLD CAAPG K T IA ++ +TG + D + RV +++
Sbjct: 236 VQDESAMLVAETMHLEKGQKVLDACAAPGGKTTQIAAMIGETGEVTGWDIYQKRVQLIQD 295
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
+++ L +++T V D+ I +D ESFDRIL+DAPCSG G ++P
Sbjct: 296 NAQRMHLDNVKTEVQDA--IAFREDLD--------ESFDRILVDAPCSGIGLMRRKPEI- 344
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+L K +Q K+L + + +LK G+L Y TC++ +EN+
Sbjct: 345 ---RYLKSKKDSSDLHQLQLKILDNIAK-----------MLKVGGVLTYSTCTILRKENQ 390
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
I L HPE E QL ++ A K + D+ + + P D +D GFF
Sbjct: 391 ETIEKFLAIHPEFE------QLKVE-TAKKIKQNRDELSLN-----IYPDDFESD--GFF 436
Query: 306 ICKLRK 311
I L+K
Sbjct: 437 IANLKK 442
>gi|88597052|ref|ZP_01100288.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
84-25]
gi|317511456|ref|ZP_07968777.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
305]
gi|384447914|ref|YP_005655965.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
IA3902]
gi|407942068|ref|YP_006857710.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
PT14]
gi|419650795|ref|ZP_14182002.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
2008-1025]
gi|419651769|ref|ZP_14182860.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
2008-894]
gi|419654996|ref|ZP_14185861.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
2008-988]
gi|419663968|ref|ZP_14194150.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
1997-4]
gi|419665899|ref|ZP_14195954.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
1997-7]
gi|419675029|ref|ZP_14204306.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
110-21]
gi|419677603|ref|ZP_14206747.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
87330]
gi|419690339|ref|ZP_14218549.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
1893]
gi|88190741|gb|EAQ94714.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
84-25]
gi|284925896|gb|ADC28248.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
IA3902]
gi|315929042|gb|EFV08281.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
305]
gi|380627932|gb|EIB46280.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
2008-1025]
gi|380630853|gb|EIB49071.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
2008-894]
gi|380637798|gb|EIB55406.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
2008-988]
gi|380641914|gb|EIB59222.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
1997-4]
gi|380642348|gb|EIB59620.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
1997-7]
gi|380652275|gb|EIB68770.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
110-21]
gi|380653911|gb|EIB70301.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
87330]
gi|380669016|gb|EIB84316.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
1893]
gi|407905906|gb|AFU42735.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
PT14]
Length = 292
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 137/280 (48%), Gaps = 44/280 (15%)
Query: 32 LSIYCYALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLD 91
+++YCY D + + LS + A + + +QN S L L+V+ GQ VLD
Sbjct: 55 INVYCYLFDAKDKAI-------LSSMK--AFNEAHFYIQNYSSYLCALNLEVKAGQSVLD 105
Query: 92 MCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTS 151
MCAAPG K ++A M +TG L + S+ R L++ +K +++ + + D I
Sbjct: 106 MCAAPGGKSINLANFMQNTGYLACNEMSRDRFFILQKNLKNYGVNA-KVFMKDGKNIGNL 164
Query: 152 SQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAV 211
+ FD+ILLDAPCS F + F S+ K+IK+ A QKKLL +
Sbjct: 165 CPL----------KFDKILLDAPCSTFA-KIGFDLEKSY----KEIKNIAKTQKKLLHS- 208
Query: 212 YRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKG 271
+ LK G LVY TC+ + EENE VI L ++EL+ + ++
Sbjct: 209 ----------ALKALKIGGELVYSTCTFTKEENEEVIENALKSEFKLELL----DIDLEN 254
Query: 272 LAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
+ K ++E+ A + + ++P+ D GFFI KLRK
Sbjct: 255 VEAKAGQSEEFAEISK-CRRILPS---LDYDGFFIAKLRK 290
>gi|116492597|ref|YP_804332.1| tRNA and rRNA cytosine-C5-methylase [Pediococcus pentosaceus ATCC
25745]
gi|116102747|gb|ABJ67890.1| tRNA and rRNA cytosine-C5-methylase [Pediococcus pentosaceus ATCC
25745]
Length = 444
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 122/246 (49%), Gaps = 42/246 (17%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ ++L + ++ GQKVLD CAAPG K T IA ++ +TG + D + RV +++
Sbjct: 236 VQDESAMLVAETMHLEKGQKVLDACAAPGGKTTQIAAMIGETGEVTGWDIYQKRVQLIQD 295
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
+++ L +++T V D+ I +D ESFDRIL+DAPCSG G ++P
Sbjct: 296 NAQRMHLENVKTEVQDA--IAPREDLD--------ESFDRILVDAPCSGIGLMRRKPEI- 344
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+L K +Q K+L + + +LK G+L Y TC++ +EN+
Sbjct: 345 ---RYLKSKKDSSDLHQLQLKILDNIAK-----------MLKVGGVLTYSTCTILRKENQ 390
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
I L HPE E QL ++ A K + D+ + + P D +D GFF
Sbjct: 391 ETIEKFLAIHPEFE------QLKVE-TAKKIKQNRDELSLN-----IYPDDFESD--GFF 436
Query: 306 ICKLRK 311
I L+K
Sbjct: 437 IANLKK 442
>gi|260893130|ref|YP_003239227.1| Fmu (Sun) domain-containing protein [Ammonifex degensii KC4]
gi|260865271|gb|ACX52377.1| Fmu (Sun) domain protein [Ammonifex degensii KC4]
Length = 460
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 98/195 (50%), Gaps = 22/195 (11%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
LQ+ ++LAG LD +PG+ VLD+CAAPG K TH+A + + G L+A D + RVT L
Sbjct: 87 LQDPAAMLAGVLLDPRPGEWVLDLCAAPGGKATHLAARLQNCGVLVANDPNPRRVTVLAR 146
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
++++ ++ + R+ FDR+L+DAPCSG A
Sbjct: 147 NLERIGVTCAVVLQEEPARLAQRF----------AGLFDRVLVDAPCSGEATLAHDPEAR 196
Query: 189 SFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVI 248
+ KK++S A Q ++L R L + G L+Y TC+ + EENE VI
Sbjct: 197 RRWS-PKKLRSMAAWQGRILAEAAR-----------LTRPGGYLLYATCTFAPEENEEVI 244
Query: 249 AWILHRHPEVELVQT 263
A L HPE LV+
Sbjct: 245 ASFLEAHPEFRLVEV 259
>gi|603587|emb|CAA58502.1| Yna1p [Saccharomyces cerevisiae]
Length = 473
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 132/296 (44%), Gaps = 55/296 (18%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ ++V DS + I P LAGHY LD
Sbjct: 141 AQTLVNRGVNLQPIGSWTKVGLQIFDSQVPIGAT-PEYLAGHYILQAASSFLPVIALDPH 199
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDM AAPG K T+I+ +M +TG + A D +K R L I +L ++ YD
Sbjct: 200 ENERILDMAAAPGGKTTYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNTIVCNYD 259
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANI- 203
+ FDRILLDAPCSG G + + + + K + I
Sbjct: 260 AREFPKVIG-----------GFDRILLDAPCSGTG----VIGKDQSVKVSRTEKDFIQIP 304
Query: 204 --QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
QK+LL + V G G++VY TCS++VEE+EAVI + L + P V+LV
Sbjct: 305 HLQKQLLLSAIDSVDCNSKHG-------GVIVYSTCSVAVEEDEAVIDYALRKRPNVKLV 357
Query: 262 QTLPQLGMKGLAHKDLEAEDQAVMQRFGPPL------IPTDRNTDTIGFFICKLRK 311
T +G EA ++F P + P N D GFF+ K +K
Sbjct: 358 DTGLAIGK--------EAFTSYRGKKFHPSVKLARRYYPHTYNVD--GFFVAKFQK 403
>gi|419657212|ref|ZP_14187871.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
1997-1]
gi|380635168|gb|EIB52998.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
1997-1]
Length = 292
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 137/280 (48%), Gaps = 44/280 (15%)
Query: 32 LSIYCYALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLD 91
+++YCY D + + LS + A + + +QN S L L+V+ GQ VLD
Sbjct: 55 INVYCYLFDAKDKAI-------LSSMK--AFNEAHFYIQNYSSYLCALNLEVKAGQSVLD 105
Query: 92 MCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTS 151
MCAAPG K ++A M +TG L + S+ R L++ +K +++ + + D I
Sbjct: 106 MCAAPGGKSINLANFMQNTGYLACNEMSRDRFFILQKNLKNYGVNA-KVFMKDGKNIGNL 164
Query: 152 SQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAV 211
+ FD+ILLDAPCS F + F S+ K+IK+ A QKKLL +
Sbjct: 165 CPL----------KFDKILLDAPCSTFA-KIGFDLEKSY----KEIKNIAKTQKKLLHS- 208
Query: 212 YRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKG 271
+ LK G LVY TC+ + EENE VI L ++EL+ + ++
Sbjct: 209 ----------ALKALKIGGELVYSTCTFTKEENEEVIENALKSEFKLELL----DIDLEN 254
Query: 272 LAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
+ K ++E+ A + + ++P+ D GFFI KLRK
Sbjct: 255 VEAKAGQSEEFAEISK-CRRILPS---LDYDGFFIAKLRK 290
>gi|15895002|ref|NP_348351.1| rRNA methylase [Clostridium acetobutylicum ATCC 824]
gi|337736943|ref|YP_004636390.1| rRNA methylase [Clostridium acetobutylicum DSM 1731]
gi|384458450|ref|YP_005670870.1| rRNA methylase, SUN family [Clostridium acetobutylicum EA 2018]
gi|15024692|gb|AAK79691.1|AE007682_1 Predicted rRNA methylase, SUN family [Clostridium acetobutylicum
ATCC 824]
gi|325509139|gb|ADZ20775.1| rRNA methylase, SUN family [Clostridium acetobutylicum EA 2018]
gi|336293086|gb|AEI34220.1| rRNA methylase [Clostridium acetobutylicum DSM 1731]
Length = 441
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 79/251 (31%), Positives = 126/251 (50%), Gaps = 53/251 (21%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ ++L +D++ + DMC+APG K TH+ L+ +TGT+ A D + ++ + E
Sbjct: 234 VQDESAMLVSECMDIKENLVIFDMCSAPGGKTTHMGELLKNTGTIYAFDLHESKIKLINE 293
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP-MF 184
K+L + +I V D+ +S D DRIL+DAPCSG G ++P +
Sbjct: 294 NAKRLGVENINASVLDA----SSYHDDFVN------KADRILVDAPCSGLGIIRKKPEIK 343
Query: 185 YNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
+N N K +K ++IQK +LQ SL+ LKK+GIL+Y TC+L+ +EN
Sbjct: 344 WNKNI-----KDLKELSDIQKNILQN----ASLY-------LKKEGILLYSTCTLNKDEN 387
Query: 245 EAVIAWILHRHP--EVELVQ--TLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTD 300
E I L +P +VE ++ P L + +G ++P N
Sbjct: 388 EKSIIQFLKNNPNFKVEPIEFGEFPNL----------------IYSPYGVTILP---NEY 428
Query: 301 TIGFFICKLRK 311
GFF+CKL+K
Sbjct: 429 MDGFFMCKLKK 439
>gi|402884916|ref|XP_003905916.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 [Papio
anubis]
Length = 724
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 135/294 (45%), Gaps = 52/294 (17%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+ V DSS+ I P LAGHY L Q
Sbjct: 324 AQALINRGVNLDPLGKWSKTGLVVYDSSVPIGAT-PEYLAGHYMLQGASSMLPVMALAPQ 382
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDMC APG K +++A LM +TG ++A D + R+ + + +L +++ YD
Sbjct: 383 EHERILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTVISHYD 442
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANI 203
+ FDR+LLDAPCSG G + + N D+K I A++
Sbjct: 443 GRQFPKVVG-----------GFDRVLLDAPCSGTGV--ISKDPAVKTNKDEKDILRCAHL 489
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
QK+LL + V+ G G LVYCTCS+ VEENE V+ + L + V LV T
Sbjct: 490 QKELLLSAIDSVNATSKTG-------GYLVYCTCSIMVEENEWVVDYALKKR-NVRLVPT 541
Query: 264 LPQLGMKGLAHKDLEAEDQAVMQRFGPPL------IPTDRNTDTIGFFICKLRK 311
G +G + +RF P L P N D GFFI K +K
Sbjct: 542 GLDFGQEGFT--------RFRERRFHPSLRSARRFYPHTHNMD--GFFIAKFKK 585
>gi|109095234|ref|XP_001105884.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
isoform 2 [Macaca mulatta]
gi|109095236|ref|XP_001106035.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
isoform 4 [Macaca mulatta]
Length = 811
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 135/294 (45%), Gaps = 52/294 (17%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+ V DSS+ I P LAGHY L Q
Sbjct: 324 AQALINRGVNLDPLGKWSKTGLVVYDSSVPIGAT-PEYLAGHYMLQGASSMLPVMALAPQ 382
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDMC APG K +++A LM +TG ++A D + R+ + + +L +++ YD
Sbjct: 383 EHERILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTVISHYD 442
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANI 203
+ FDR+LLDAPCSG G + + N D+K I A++
Sbjct: 443 GRQFPKVVG-----------GFDRVLLDAPCSGTGV--ISKDPTVKTNKDEKDILRCAHL 489
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
QK+LL + V+ G G LVYCTCS+ VEENE V+ + L + V LV T
Sbjct: 490 QKELLLSAIDSVNATSKTG-------GYLVYCTCSIMVEENEWVVDYALKKR-NVRLVPT 541
Query: 264 LPQLGMKGLAHKDLEAEDQAVMQRFGPPL------IPTDRNTDTIGFFICKLRK 311
G +G + +RF P L P N D GFFI K +K
Sbjct: 542 GLDFGQEGFT--------RFRERRFHPSLRSARRFYPHTHNMD--GFFIAKFKK 585
>gi|401842841|gb|EJT44878.1| NOP2-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 619
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 88/292 (30%), Positives = 133/292 (45%), Gaps = 47/292 (16%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ ++V DS + I P LAGHY LD
Sbjct: 287 AQTLVNRGVNLQPIGPWTKVGLQIFDSQVPIGAT-PEYLAGHYILQAASSFLPVIALDPH 345
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDM AAPG K T+I+ +M +TG + A D +K R L I +L ++ YD
Sbjct: 346 ENERILDMAAAPGGKTTYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNTIVCNYD 405
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANI- 203
+ FDRILLDAPCSG G + + + + K + I
Sbjct: 406 AREFPKVIG-----------GFDRILLDAPCSGTG----VIGKDQSVKVSRTEKDFIQIP 450
Query: 204 --QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
QK+LL + V G G++VY TCS++VEE+EAV+ + L + P V+LV
Sbjct: 451 HLQKQLLLSAIDSVDCNSKHG-------GVIVYSTCSVAVEEDEAVVNYALRKRPNVKLV 503
Query: 262 QTLPQLGMKGLAHKDLEAEDQAV--MQRFGPPLIPTDRNTDTIGFFICKLRK 311
+T +G +G + +V +R+ P D GFF+ K +K
Sbjct: 504 ETGLAIGKEGFTSYRGKNFHPSVKLARRYYPHTYNVD------GFFVAKFQK 549
>gi|300121088|emb|CBK21470.2| unnamed protein product [Blastocystis hominis]
Length = 690
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 121/264 (45%), Gaps = 45/264 (17%)
Query: 73 PSILAGHY-------------LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKS 119
P LAGHY L+ QP +++LDMCAAPG K THIA LM +TG L+A D
Sbjct: 253 PEYLAGHYMLQSASSMLPVMALNPQPNERILDMCAAPGGKTTHIAQLMKNTGVLVANDLK 312
Query: 120 KPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG 179
K R+ + +L +++ Y + FDR+LLDAPC+G G
Sbjct: 313 KERLIATVANLHRLGVTNTIVTNYHGCKFPKVMG-----------GFDRVLLDAPCTGLG 361
Query: 180 QRPMFYNANSFLNLDKKIKSY---ANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT 236
+ + + + + +K A +QK L+ A + G G+LVY T
Sbjct: 362 ----VISRDPSVKMSRTVKDMVQNAFVQKLLILAAIDSIDANSKSG-------GVLVYST 410
Query: 237 CSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGL-AHKDLEAEDQAVMQRFGPPLIPT 295
CS+SV ENEAV+ + L R V+LV T G G + + + M R P +
Sbjct: 411 CSVSVYENEAVVNYAL-RKRHVKLVDTGLTFGTPGFTSFRQFKYHPSMSMTRRYYPHV-- 467
Query: 296 DRNTDTIGFFICKLRKKYGEAPEI 319
N D GFF+ KL K E P+
Sbjct: 468 -HNMD--GFFVAKLVKLSNEIPKT 488
>gi|126700200|ref|YP_001089097.1| 16S rRNA methyltransferase B [Clostridium difficile 630]
gi|115251637|emb|CAJ69470.1| Ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Clostridium
difficile 630]
Length = 441
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 80/324 (24%), Positives = 149/324 (45%), Gaps = 64/324 (19%)
Query: 12 WLDRAG--FVSVLRLPARQRPSLSIYCYALDILFRGV-------------------AVEI 50
W+D+ G F L ++PS+ I L I + A+++
Sbjct: 156 WIDKFGQEFAEDLLEANNEKPSIYIRTNTLKISREELIEKLSEMGIVCLKVPMVEEAIKV 215
Query: 51 TNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDT 110
+ + N + + +Q++ S++ G ++ + G VLD+C+APG K TH+A LMN+T
Sbjct: 216 EKMKNIEKNELFKAGLFTIQDISSMIVGKVINPKEGSFVLDVCSAPGGKSTHLATLMNNT 275
Query: 111 GTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRIL 170
G ++A D + ++ + T+ +L L ++ +D++ I+ +S FD +L
Sbjct: 276 GQVVARDIFEHKLKLINSTVNRLGLKNVFVERFDASEIDENSI----------SKFDYVL 325
Query: 171 LDAPCSGFG---QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLK 227
D PCSGFG ++P ++++K +IQKK+L+ ++V K
Sbjct: 326 ADVPCSGFGIIRRKPEIK-----YKKEEELKDITSIQKKILENASKYV-----------K 369
Query: 228 KDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQR 287
G LVY TC++ EN ++ + + + E V + DL+ +D+ ++
Sbjct: 370 VGGTLVYSTCTIQDVENINIVTFFVEENHNFEFVPI-------DTVNVDLDNQDKGYLKI 422
Query: 288 FGPPLIPTDRNTDTIGFFICKLRK 311
+ P + D GFFI KL++
Sbjct: 423 Y-PNIHGID------GFFIAKLKR 439
>gi|109095238|ref|XP_001105964.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
isoform 3 [Macaca mulatta]
Length = 807
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 135/294 (45%), Gaps = 52/294 (17%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+ V DSS+ I P LAGHY L Q
Sbjct: 320 AQALINRGVNLDPLGKWSKTGLVVYDSSVPIGAT-PEYLAGHYMLQGASSMLPVMALAPQ 378
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDMC APG K +++A LM +TG ++A D + R+ + + +L +++ YD
Sbjct: 379 EHERILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTVISHYD 438
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANI 203
+ FDR+LLDAPCSG G + + N D+K I A++
Sbjct: 439 GRQFPKVVG-----------GFDRVLLDAPCSGTGV--ISKDPTVKTNKDEKDILRCAHL 485
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
QK+LL + V+ G G LVYCTCS+ VEENE V+ + L + V LV T
Sbjct: 486 QKELLLSAIDSVNATSKTG-------GYLVYCTCSIMVEENEWVVDYALKKR-NVRLVPT 537
Query: 264 LPQLGMKGLAHKDLEAEDQAVMQRFGPPL------IPTDRNTDTIGFFICKLRK 311
G +G + +RF P L P N D GFFI K +K
Sbjct: 538 GLDFGQEGFT--------RFRERRFHPSLRSARRFYPHTHNMD--GFFIAKFKK 581
>gi|365758690|gb|EHN00521.1| Nop2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 619
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 88/292 (30%), Positives = 133/292 (45%), Gaps = 47/292 (16%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ ++V DS + I P LAGHY LD
Sbjct: 287 AQTLVNRGVNLQPIGPWTKVGLQIFDSQVPIGAT-PEYLAGHYILQAASSFLPVIALDPH 345
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDM AAPG K T+I+ +M +TG + A D +K R L I +L ++ YD
Sbjct: 346 ENERILDMAAAPGGKTTYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNTIVCNYD 405
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANI- 203
+ FDRILLDAPCSG G + + + + K + I
Sbjct: 406 AREFPKVIG-----------GFDRILLDAPCSGTG----VIGKDQSVKVSRTEKDFIQIP 450
Query: 204 --QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
QK+LL + V G G++VY TCS++VEE+EAV+ + L + P V+LV
Sbjct: 451 HLQKQLLLSAIDSVDCNSKHG-------GVIVYSTCSVAVEEDEAVVNYALRKRPNVKLV 503
Query: 262 QTLPQLGMKGLAHKDLEAEDQAV--MQRFGPPLIPTDRNTDTIGFFICKLRK 311
+T +G +G + +V +R+ P D GFF+ K +K
Sbjct: 504 ETGLAIGKEGFTSYRGKNFHPSVKLARRYYPHTYNVD------GFFVAKFQK 549
>gi|193638967|ref|XP_001943714.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
[Acyrthosiphon pisum]
Length = 657
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 93/293 (31%), Positives = 139/293 (47%), Gaps = 56/293 (19%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV ++ S+V V +S++ I P LAGHY L Q +
Sbjct: 342 LINRGVNLDPIGNWSKVGLVVYNSTVPIGA-TPEYLAGHYMLQAASSMLPVMALAPQENE 400
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+LDMC+APG K +HIA +M +TG LIA D +K R + ++ +++ YD
Sbjct: 401 LILDMCSAPGGKASHIAAIMKNTGVLIANDVNKNRAKAVIGNFHRMGIANSVISTYDGRH 460
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDK---KIKSYANIQ 204
I +L K +FDR+LLDAPC+G G + +S + + K ++ +Q
Sbjct: 461 I----------PQLFK-NFDRVLLDAPCTGTG----VISKDSGVKMSKDETDLQRCFTLQ 505
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL 264
++LL A ++ G G LVY TCS+ VEENE VI + L + +V+LV T
Sbjct: 506 RELLLAAIDSLNFKSSTG-------GYLVYSTCSVLVEENECVIDYALKKR-DVKLVDTG 557
Query: 265 PQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
G +G + RF P + T R N D GFF+ KL+K
Sbjct: 558 LSFGTEGFTN--------LRQHRFHPTMKLTKRFYPHTHNMD--GFFVAKLKK 600
>gi|109095240|ref|XP_001105811.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
isoform 1 [Macaca mulatta]
Length = 844
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 135/294 (45%), Gaps = 52/294 (17%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+ V DSS+ I P LAGHY L Q
Sbjct: 357 AQALINRGVNLDPLGKWSKTGLVVYDSSVPIGAT-PEYLAGHYMLQGASSMLPVMALAPQ 415
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDMC APG K +++A LM +TG ++A D + R+ + + +L +++ YD
Sbjct: 416 EHERILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTVISHYD 475
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANI 203
+ FDR+LLDAPCSG G + + N D+K I A++
Sbjct: 476 GRQFPKVVG-----------GFDRVLLDAPCSGTGV--ISKDPTVKTNKDEKDILRCAHL 522
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
QK+LL + V+ G G LVYCTCS+ VEENE V+ + L + V LV T
Sbjct: 523 QKELLLSAIDSVNATSKTG-------GYLVYCTCSIMVEENEWVVDYALKKR-NVRLVPT 574
Query: 264 LPQLGMKGLAHKDLEAEDQAVMQRFGPPL------IPTDRNTDTIGFFICKLRK 311
G +G + +RF P L P N D GFFI K +K
Sbjct: 575 GLDFGQEGFT--------RFRERRFHPSLRSARRFYPHTHNMD--GFFIAKFKK 618
>gi|418069023|ref|ZP_12706303.1| tRNA and rRNA cytosine-C5-methylase [Pediococcus acidilactici
MA18/5M]
gi|357537756|gb|EHJ21779.1| tRNA and rRNA cytosine-C5-methylase [Pediococcus acidilactici
MA18/5M]
Length = 444
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 118/247 (47%), Gaps = 42/247 (17%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
I Q+ ++L G + + GQKVLD CAAPG K T +A + G +IA D + R ++
Sbjct: 235 IAQDESAMLVGETMQLATGQKVLDACAAPGGKTTQLAQKVGPDGQVIAWDIYESRTRLIQ 294
Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMF 184
+ +++ L++I T V+D+T ++ KE FDRIL+DAPCSG G ++P
Sbjct: 295 QNAQRMHLTNIVTEVHDAT--TPCPEL--------KEEFDRILVDAPCSGIGLLRRKP-- 342
Query: 185 YNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
+L K +Q +L V +LK GIL Y TC++ +EN
Sbjct: 343 --ETRYLKSKKDSSDLHRVQLDILDNV-----------ASMLKVGGILTYSTCTMLRKEN 389
Query: 245 EAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
+ I L +HPE EL++T +K DL + P D +D GF
Sbjct: 390 QMTIDEFLTQHPEFELLKTQTDKKVKA-DRTDLSLN-----------IYPDDFGSD--GF 435
Query: 305 FICKLRK 311
FI ++K
Sbjct: 436 FIANMKK 442
>gi|419620735|ref|ZP_14154149.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
51494]
gi|419646404|ref|ZP_14177870.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
53161]
gi|419670382|ref|ZP_14200074.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
1997-14]
gi|419673284|ref|ZP_14202758.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
51037]
gi|419684693|ref|ZP_14213279.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
1577]
gi|380598524|gb|EIB18925.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
51494]
gi|380623577|gb|EIB42275.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
53161]
gi|380650762|gb|EIB67377.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
1997-14]
gi|380654067|gb|EIB70446.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
51037]
gi|380666717|gb|EIB82242.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
1577]
Length = 292
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 90/283 (31%), Positives = 136/283 (48%), Gaps = 50/283 (17%)
Query: 32 LSIYCYALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLD 91
+++YCY D + + LS + A + + +QN S L L+V+ GQ VLD
Sbjct: 55 INVYCYLFDAKDKAI-------LSSMK--AFNEAHFYIQNYSSYLCALNLEVKAGQSVLD 105
Query: 92 MCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTS 151
MCAAPG K ++A M +TG L + S+ R L++ +K +++ + + D I
Sbjct: 106 MCAAPGGKSINLANFMQNTGYLACNEMSRDRFFILQKNLKNYGVNA-KVFMKDGKNIGNL 164
Query: 152 SQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAV 211
+ FD+ILLDAPCS F + F S+ K+IK+ A QKKLL +
Sbjct: 165 CPL----------KFDKILLDAPCSTFA-KIGFDLEKSY----KEIKNIAKTQKKLLHS- 208
Query: 212 YRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKG 271
+ LK G LVY TC+ + EENE VI L ++EL+ + ++
Sbjct: 209 ----------ALKALKIGGELVYSTCTFTKEENEEVIENALKSEFKLELL----DIDLEN 254
Query: 272 LAHKDLEAEDQAVM---QRFGPPLIPTDRNTDTIGFFICKLRK 311
+ K ++E+ A + +R P L D GFFI KLRK
Sbjct: 255 VEAKAGQSEEFAEILKCRRILPSL-------DYDGFFIAKLRK 290
>gi|377556134|ref|ZP_09785856.1| tRNA/rRNA methyltransferase [Lactobacillus gastricus PS3]
gi|376168735|gb|EHS87467.1| tRNA/rRNA methyltransferase [Lactobacillus gastricus PS3]
Length = 450
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 84/263 (31%), Positives = 125/263 (47%), Gaps = 29/263 (11%)
Query: 14 DRAGFVSVLRLPA----RQRPSLSIYCYALDILFRG-VAVEITNVLSQVPNVALDSSMGI 68
+ A F++ L+ P+ R P A +G VA T QV +LD G
Sbjct: 18 EAADFLTALQAPSQAGFRSNPLKPALPTATIAQAKGKVAAVPTGYYGQVDGHSLDHVTGW 77
Query: 69 L--QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKL 126
+ Q ++L G + Q G+KVLD+CAAPG K TH+ M D G L+A + R L
Sbjct: 78 VYSQEPSAMLVGEVVAPQAGEKVLDLCAAPGGKSTHLIGKMQDQGLLVANEIFPKRAKIL 137
Query: 127 EETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYN 186
E +++ + Q V + + + Q + FDRIL+DAPCSG G
Sbjct: 138 AENLER--WGANQAVVTSESPDHLAPQF--------PQFFDRILVDAPCSGEGMFRKEPE 187
Query: 187 ANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEA 246
+ + D ++ AN Q+K+L + + +LK G LVY TC+ + EE+E
Sbjct: 188 GIQYWHPDYPLEC-ANRQRKILGSALQ-----------MLKPGGTLVYSTCTFAPEEDEQ 235
Query: 247 VIAWILHRHPEVELVQTLPQLGM 269
VIAW+L + E+ LV+ Q GM
Sbjct: 236 VIAWLLDTYSELSLVEIPKQAGM 258
>gi|70945403|ref|XP_742525.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56521557|emb|CAH82175.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 511
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 82/273 (30%), Positives = 131/273 (47%), Gaps = 53/273 (19%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
I+Q+ S++ L+++ + VLDMCAAPG K T+I + + G + A D +K R +E
Sbjct: 292 IIQSSSSLIPVLELNIKENELVLDMCAAPGGKCTYICTIKKNKGIVYANDINKMRCKAIE 351
Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNA 187
++ ++++ +DS +IN K K FD+ILLDAPCSG G + N
Sbjct: 352 AHAARMGINNLIITSFDSLKIN----------KYFKFKFDKILLDAPCSGTG--VVNKNK 399
Query: 188 NSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
+ K+I+ A Q+KLL I ++K GI++Y TCS++VEENE V
Sbjct: 400 TARRKTIKEIRDLAQKQRKLLN-----------NAIDIVKNGGIVIYSTCSITVEENEQV 448
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I +IL + +V L+ T +G G+ H ++F + +C
Sbjct: 449 INYILKKR-DVNLLPTDINIGDPGIIH--------YRKKQFSSKIA------------LC 487
Query: 308 KLRKKYGEAPEIYIHPHLNDCIVIGPLLKLSQS 340
K IY+H H +D + L+K S +
Sbjct: 488 K---------RIYLHKHNHDNFFVAKLVKRSDA 511
>gi|385806067|ref|YP_005842465.1| Proliferating-cell nucleolar antigen p120-like protein
[Fervidicoccus fontis Kam940]
gi|383795930|gb|AFH43013.1| Proliferating-cell nucleolar antigen p120-like protein
[Fervidicoccus fontis Kam940]
Length = 331
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 81/251 (32%), Positives = 129/251 (51%), Gaps = 39/251 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q + S+LA L KV+DM AAPG K TH+A LM + G ++++D ++ R+ KL
Sbjct: 113 VQGVGSMLASEVLSPVEDDKVVDMAAAPGGKTTHMAQLMKNKGIILSIDINRERIWKLRV 172
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
I++L ++ D+ +IN E FD+++LDAPC+G G + Y
Sbjct: 173 NIERLNAKNVYVLRTDALKINGLD-----------EYFDKVMLDAPCTGEGL--IVYKKE 219
Query: 189 SFLNLDKKIKSYAN---IQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
K I+ Y +Q +L+ ++ LLK+ G ++Y TCS++ EENE
Sbjct: 220 R--KFSKGIEDYKKMIPLQISMLKKAFK-----------LLKRGGKILYSTCSIAPEENE 266
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR---NTD-T 301
VI+ +L+ ++E++ T G+KG ++ L + FG L R NTD T
Sbjct: 267 YVISQVLNELKDIEILPTRYN-GVKG--NEGLPEYNDIF---FGDELKNCLRLYPNTDKT 320
Query: 302 IGFFICKLRKK 312
GFF+C +RKK
Sbjct: 321 EGFFLCLMRKK 331
>gi|293572652|ref|ZP_06683620.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E980]
gi|430842687|ref|ZP_19460599.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1007]
gi|431083419|ref|ZP_19495990.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1604]
gi|431115946|ref|ZP_19497851.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1613]
gi|431739264|ref|ZP_19528202.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1972]
gi|431742272|ref|ZP_19531166.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E2039]
gi|291607238|gb|EFF36592.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E980]
gi|430492911|gb|ELA69252.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1007]
gi|430565240|gb|ELB04409.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1604]
gi|430568552|gb|ELB07595.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1613]
gi|430596241|gb|ELB34084.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1972]
gi|430600274|gb|ELB37927.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E2039]
Length = 452
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 119/247 (48%), Gaps = 38/247 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDT--GTLIALDKSKPRVTKL 126
+Q+ S+L + ++P VLD CAAPG K THIA ++ + G +IALD + +V +
Sbjct: 241 IQDESSMLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDPSCGGEVIALDVHEHKVKLI 300
Query: 127 EETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFY 185
EE +L +SS + D+ ++ + + E FDRIL+DAPCSG G
Sbjct: 301 EENATRLGVSSAVYAQKMDAREVSK---------QFEPEQFDRILVDAPCSGLG----LL 347
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ K+ AN+ K L+ + P LK GIL Y TC++ EEN+
Sbjct: 348 RRKPDIRYKKQPDELANLPKIQLEILESCA--------PALKSSGILTYSTCTILKEENQ 399
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
V++ L HP+ E + L ++ +++++ L P TD GFF
Sbjct: 400 DVVSAFLETHPDFERIDVLTDPMLQS-----------SIVEKM-LTLYPHQFYTD--GFF 445
Query: 306 ICKLRKK 312
IC LRKK
Sbjct: 446 ICCLRKK 452
>gi|357008066|ref|ZP_09073065.1| hypothetical protein PelgB_01210, partial [Paenibacillus elgii B69]
Length = 287
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 104/202 (51%), Gaps = 34/202 (16%)
Query: 73 PSILA-GHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIK 131
PS +A LDV+PG++VLD+CAAPG K T +A + TG ++A D RV L +K
Sbjct: 92 PSAMAPAELLDVRPGERVLDLCAAPGGKTTQLAAKLQGTGLIVANDVHPDRVKAL---VK 148
Query: 132 KLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE---SFDRILLDAPCSGFGQRPMFYNAN 188
++LS ++ V ++ + KL+ FD+IL+DAPCSG G MF
Sbjct: 149 NIELSGVRNAVV----------LNEDPAKLEGTFTGYFDKILIDAPCSGEG---MFRKEE 195
Query: 189 SFLNLDKK--IKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEA 246
+ + + YA +Q+ LL+ R +LK G++VY TC+ S EENEA
Sbjct: 196 DMAKVWRPDWPEKYAEMQRMLLRQAAR-----------MLKPGGLMVYSTCTFSPEENEA 244
Query: 247 VIAWILHRHPEVELVQTLPQLG 268
+IA L HP V+ P G
Sbjct: 245 MIAAFLDEHPAF-AVEPAPAFG 265
>gi|86149856|ref|ZP_01068085.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|157414915|ref|YP_001482171.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
81116]
gi|384441270|ref|YP_005657573.1| NOL1\\NOP2\\sun family protein [Campylobacter jejuni subsp. jejuni
M1]
gi|419632407|ref|ZP_14164949.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
LMG 23264]
gi|419633425|ref|ZP_14165861.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
LMG 23269]
gi|419644042|ref|ZP_14175632.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
LMG 9081]
gi|419666854|ref|ZP_14196843.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
1997-10]
gi|85839674|gb|EAQ56934.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|157385879|gb|ABV52194.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
81116]
gi|307747553|gb|ADN90823.1| NOL1\\NOP2\\sun family protein [Campylobacter jejuni subsp. jejuni
M1]
gi|380608931|gb|EIB28665.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
LMG 23264]
gi|380612286|gb|EIB31817.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
LMG 23269]
gi|380622809|gb|EIB41546.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
LMG 9081]
gi|380647002|gb|EIB63934.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
1997-10]
Length = 292
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 137/280 (48%), Gaps = 44/280 (15%)
Query: 32 LSIYCYALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLD 91
++ YCY D + + LS + A + + +QN S L L+V+ GQ+VLD
Sbjct: 55 INAYCYLFDAKDKAI-------LSSMK--AFNEAHFYIQNYSSYLCALNLEVKAGQRVLD 105
Query: 92 MCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTS 151
MCAAPG K ++A M +TG L + S+ R L++ +K +++ + + D I
Sbjct: 106 MCAAPGGKSINLANFMQNTGYLACNEMSRDRFFILQKNLKNYGVNA-KVFMKDGKNIGNL 164
Query: 152 SQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAV 211
+ FD+ILLDAPCS F + F S+ K+IK+ A QKKLL +
Sbjct: 165 CPL----------KFDKILLDAPCSTFA-KIGFDLEKSY----KEIKNIAKTQKKLLHS- 208
Query: 212 YRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKG 271
+ LK G LVY TC+ + EENE VI L ++EL+ + ++
Sbjct: 209 ----------ALKALKIGGELVYSTCTFTKEENEEVIENALKSEFKLELL----DIDLEN 254
Query: 272 LAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
+ K ++E+ A + + ++P+ D GFFI KLRK
Sbjct: 255 VEAKAGQSEEFAEISK-CRRILPS---LDYDGFFIAKLRK 290
>gi|68476951|ref|XP_717453.1| hypothetical protein CaO19.8131 [Candida albicans SC5314]
gi|68477142|ref|XP_717364.1| hypothetical protein CaO19.501 [Candida albicans SC5314]
gi|46439073|gb|EAK98395.1| hypothetical protein CaO19.501 [Candida albicans SC5314]
gi|46439166|gb|EAK98487.1| hypothetical protein CaO19.8131 [Candida albicans SC5314]
Length = 618
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 85/269 (31%), Positives = 122/269 (45%), Gaps = 44/269 (16%)
Query: 55 SQVPNVALDSSMG---ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTG 111
SQVP A + ILQ S L L+ Q +++LDM AAPG K T+I+ LM +TG
Sbjct: 316 SQVPIGATPEYLAGQYILQAASSFLPVMALEPQENERILDMAAAPGGKTTYISALMKNTG 375
Query: 112 TLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILL 171
+ A D +K R L I +L + YD+ FDR+LL
Sbjct: 376 CVFANDANKARTKSLIANIHRLGCKNTIVCNYDAREFPKVIG-----------GFDRVLL 424
Query: 172 DAPCSGFGQRPMFYNANSFLNLDKKIKSYANI---QKKLLQAVYRFVSLFDWQGIPLLKK 228
DAPCSG G + + + + K + I QK+LL + V G
Sbjct: 425 DAPCSGTG----VIAKDESVKVSRTEKDFMQIPHLQKQLLLSAIDSVDAHSSTG------ 474
Query: 229 DGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRF 288
G++VY TCS++V+ENEAV+ + L + P V+LV T +G +G + F
Sbjct: 475 -GVIVYSTCSIAVDENEAVVDYALRKRPNVKLVDTGLTIGKEGFT--------SYRGKHF 525
Query: 289 GPPLIPTDR------NTDTIGFFICKLRK 311
P + T R N D GF++ K +K
Sbjct: 526 NPKISLTRRYYPHTYNVD--GFYVAKFKK 552
>gi|254415201|ref|ZP_05028963.1| ribosomal RNA small subunit methyltransferase B [Coleofasciculus
chthonoplastes PCC 7420]
gi|196178007|gb|EDX73009.1| ribosomal RNA small subunit methyltransferase B [Coleofasciculus
chthonoplastes PCC 7420]
Length = 448
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 106/226 (46%), Gaps = 37/226 (16%)
Query: 61 ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSK 120
+ +Q+ + L H L+ QP ++D CAAPG K TH+A LM D GT+ A DK+
Sbjct: 233 GFNEGWWTIQDSSAQLVSHLLNPQPHDVIIDACAAPGGKTTHLAELMRDRGTIWACDKAA 292
Query: 121 PRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG- 179
R+ K++ ++LQL SIQ DS +Q D +LLDAPCSG G
Sbjct: 293 SRLKKVKANTQRLQLQSIQICPGDSRDFPQFTQ-----------KADTVLLDAPCSGLGT 341
Query: 180 --QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC 237
+RP + +++ + +Q +LL +V K G+LVY TC
Sbjct: 342 LHRRPDI----RWRCTPARVQELSVLQSELLTQTATWV-----------KPGGVLVYATC 386
Query: 238 SLSVEENEAVIAWILHRH--------PEVELVQTLPQLGMKGLAHK 275
+L +ENEAVI L RH P + PQ +K L H+
Sbjct: 387 TLHPQENEAVIQAFLERHLHWCIDAPPPTLTAFSTPQGWLKVLPHQ 432
>gi|28210910|ref|NP_781854.1| 16S rRNA M(5)C 967 methyltransferase [Clostridium tetani E88]
gi|28203349|gb|AAO35791.1| 16S rRNA M(5)C 967 methyltransferase [Clostridium tetani E88]
Length = 454
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 121/247 (48%), Gaps = 42/247 (17%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ ++L +D++ V+D+C+APG K THI+ +MN+TG ++A D + ++ +++
Sbjct: 246 VQDESAMLVAGAMDLEDNMNVMDLCSAPGGKTTHISEIMNNTGKVLAFDIHENKLDLIKQ 305
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
++L + +I + D T N K E +RIL+DAPCSG G ++P
Sbjct: 306 NKERLGVKNIDLILGDGTLYN----------KKYSEFANRILIDAPCSGLGIIRKKPEI- 354
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ K +KS +IQ+K+L+ G LKK+GIL+Y TC+L+ +EN
Sbjct: 355 ---KYTKSAKDLKSIVHIQRKILE-----------NGAKYLKKNGILLYSTCTLNKKENI 400
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
+ W L P ++ + L D + +G I + D GF+
Sbjct: 401 ENVKWFLKEFPNFKIEKIF------------LGNLDNFIYDEYGTLTILPNEYMD--GFY 446
Query: 306 ICKLRKK 312
I K +K+
Sbjct: 447 IAKFKKQ 453
>gi|238879878|gb|EEQ43516.1| nucleolar protein NOP2 [Candida albicans WO-1]
Length = 618
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 85/269 (31%), Positives = 122/269 (45%), Gaps = 44/269 (16%)
Query: 55 SQVPNVALDSSMG---ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTG 111
SQVP A + ILQ S L L+ Q +++LDM AAPG K T+I+ LM +TG
Sbjct: 316 SQVPIGATPEYLAGQYILQAASSFLPVMALEPQENERILDMAAAPGGKTTYISALMKNTG 375
Query: 112 TLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILL 171
+ A D +K R L I +L + YD+ FDR+LL
Sbjct: 376 CVFANDANKARTKSLIANIHRLGCKNTIVCNYDAREFPKVIG-----------GFDRVLL 424
Query: 172 DAPCSGFGQRPMFYNANSFLNLDKKIKSYANI---QKKLLQAVYRFVSLFDWQGIPLLKK 228
DAPCSG G + + + + K + I QK+LL + V G
Sbjct: 425 DAPCSGTG----VIAKDESVKVSRTEKDFMQIPHLQKQLLLSAIDSVDAHSSTG------ 474
Query: 229 DGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRF 288
G++VY TCS++V+ENEAV+ + L + P V+LV T +G +G + F
Sbjct: 475 -GVIVYSTCSIAVDENEAVVDYALRKRPNVKLVDTGLTIGKEGFT--------SYRGKHF 525
Query: 289 GPPLIPTDR------NTDTIGFFICKLRK 311
P + T R N D GF++ K +K
Sbjct: 526 NPKISLTRRYYPHTYNVD--GFYVAKFKK 552
>gi|238783195|ref|ZP_04627221.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
bercovieri ATCC 43970]
gi|238715991|gb|EEQ07977.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
bercovieri ATCC 43970]
Length = 431
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 100/186 (53%), Gaps = 29/186 (15%)
Query: 81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQT 140
LD Q G+++LD+CAAPG K THI L ++A+D + R+++++E +++LQL ++
Sbjct: 242 LDPQNGEQILDLCAAPGGKTTHI-LEAAPKAHVLAVDIDEQRLSRVKENLQRLQLHAV-- 298
Query: 141 HVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKI 197
R+ + FDRILLDAPCS G + P +L D I
Sbjct: 299 -----VRVGDGR---TPEAWCGDQQFDRILLDAPCSATGVIRRHPDI----KWLRRDSDI 346
Query: 198 KSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPE 257
A +Q ++++A++ P LKK G++VY TCS+ EEN+ IA L RH E
Sbjct: 347 AELAQLQSEIIEAIW-----------PKLKKGGVMVYATCSILPEENQQQIAAFLQRHSE 395
Query: 258 VELVQT 263
ELV+T
Sbjct: 396 AELVET 401
>gi|366085800|ref|ZP_09452285.1| 16S rRNA methyltransferase B [Lactobacillus zeae KCTC 3804]
Length = 446
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 83/249 (33%), Positives = 118/249 (47%), Gaps = 42/249 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLM--NDTGTLIALDKSKPRVTKL 126
+Q+ S+L LD+QPG VLD CAAPG K THIA + + G + ALD ++ +
Sbjct: 234 MQDESSMLVAPSLDIQPGDAVLDACAAPGGKTTHIAQYLDPDQGGHVTALDLHANKIRLI 293
Query: 127 EETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPM 183
++ +L L S R+ + Q+D ESFD+IL+DAPCSG G ++P
Sbjct: 294 QQNANRLGLVD-----RVSARMLDARQVD---ATFAPESFDKILVDAPCSGLGLIRRKPE 345
Query: 184 FYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEE 243
+ + IQ +L +V P LK G L Y TC++ EE
Sbjct: 346 I----KYTKQADDPRHLQQIQLAILNSV-----------APTLKIGGRLTYSTCTMVKEE 390
Query: 244 NEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIG 303
N+ V+A L HPE E V P L +K L +A +Q F P D +TD G
Sbjct: 391 NQDVVAQFLADHPEFEQV---PVLSLKPLT----KAHGAPALQLF-----PDDYDTD--G 436
Query: 304 FFICKLRKK 312
FFI + ++
Sbjct: 437 FFIASMIRR 445
>gi|346316266|ref|ZP_08857772.1| hypothetical protein HMPREF9022_03429 [Erysipelotrichaceae
bacterium 2_2_44A]
gi|345903449|gb|EGX73214.1| hypothetical protein HMPREF9022_03429 [Erysipelotrichaceae
bacterium 2_2_44A]
Length = 442
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 84/258 (32%), Positives = 121/258 (46%), Gaps = 49/258 (18%)
Query: 69 LQNLPSILAGHY-------------LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIA 115
L N P+ LAG + LDVQ VLDMCAAPG K T IA + D G L++
Sbjct: 71 LGNHPAHLAGLFYMQEPSAASAVEVLDVQRDDWVLDMCAAPGGKSTQIAAKLQDRGFLVS 130
Query: 116 LDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPC 175
+ R L +++L S NT Q + M FDR+L+DAPC
Sbjct: 131 NEIESRRAQILLSNMERLGFSRCMI-------TNTHPQQIAKEMS---GWFDRVLVDAPC 180
Query: 176 SGFGQRPMFYNANSFLN--LDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILV 233
SG G MF + ++ ++ + + A Q +L + Y LK+DG LV
Sbjct: 181 SGEG---MFKKHSKAMDDWSEEHVLACAQRQLHILDSAY-----------AALKEDGTLV 226
Query: 234 YCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLI 293
Y TC+ S+EENE V+ + +HP++ELV G GL + DL+ E ++R +
Sbjct: 227 YSTCTYSMEENEQVVYAFMEQHPDMELVDCGVAFGRSGLPYLDLDTEK---LRR----IF 279
Query: 294 PTDRNTDTIGFFICKLRK 311
P D+ G F+ K +K
Sbjct: 280 PMDQGE---GHFVAKFKK 294
>gi|325290449|ref|YP_004266630.1| sun protein [Syntrophobotulus glycolicus DSM 8271]
gi|324965850|gb|ADY56629.1| sun protein [Syntrophobotulus glycolicus DSM 8271]
Length = 461
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 121/246 (49%), Gaps = 37/246 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S L H L V+PG++VLD+C APG K TH+A LMN+ GT+I D +++ + E
Sbjct: 247 VQDESSQLVAHILGVKPGERVLDVCCAPGGKTTHLAQLMNNQGTIIGNDLYPAKLSLVNE 306
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
+++L + IQT D+ + IE FD++L+DAPCSG G +R
Sbjct: 307 LVERLGIGIIQTQAGDAGILE-----GIE------GRFDKVLVDAPCSGLGVIRRRADLR 355
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
S +++IK + IQKK+L FV+ G +VY TC++ EEN
Sbjct: 356 WQKS----EQEIKELSEIQKKILLRAADFVA-----------PGGEMVYSTCTIEPEENF 400
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
V+ P+ V + G + + A D+ + + ++P N D GFF
Sbjct: 401 EVVKVFRAERPDFSSVS------LTGEINFPVTAGDKKQLAKGVFQILPHLYNMD--GFF 452
Query: 306 ICKLRK 311
+ K R+
Sbjct: 453 LAKFRR 458
>gi|291392735|ref|XP_002712919.1| PREDICTED: nucleolar protein 1, 120kDa [Oryctolagus cuniculus]
Length = 809
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 99/316 (31%), Positives = 140/316 (44%), Gaps = 56/316 (17%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+ V DSS+ I P LAGHY L Q
Sbjct: 322 AQALINRGVNLDPLGKWSKTGLVVYDSSVPIGAT-PEYLAGHYMLQGASSMLPVMALAPQ 380
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDMC APG K ++IA LM +TG ++A D + R+ + + +L +++ +D
Sbjct: 381 EHERILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHHD 440
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANI 203
FDR+LLDAPCSG G + + N D+K I A++
Sbjct: 441 GRHFPKVVG-----------GFDRVLLDAPCSGTGV--ISKDPAVKTNKDEKDILRCAHL 487
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
QK+LL + V+ G G LVYCTCS+ VEENE V+ + L + V LV T
Sbjct: 488 QKELLLSAIDSVNAASKTG-------GYLVYCTCSVMVEENEWVVDYALKKR-NVRLVPT 539
Query: 264 LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRKKYGEAP 317
G +G + +RF P L T R N D GFFI K +K P
Sbjct: 540 GLDFGQEGFT--------RFRERRFHPSLRSTRRFYPHTHNMD--GFFIAKFKKFSNSVP 589
Query: 318 EIYIHPHLNDCIVIGP 333
+ P D P
Sbjct: 590 Q----PQPGDSATATP 601
>gi|392952180|ref|ZP_10317735.1| hypothetical protein WQQ_18070 [Hydrocarboniphaga effusa AP103]
gi|391861142|gb|EIT71670.1| hypothetical protein WQQ_18070 [Hydrocarboniphaga effusa AP103]
Length = 432
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 121/230 (52%), Gaps = 34/230 (14%)
Query: 39 LDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGN 98
+D + +A+E + ++P A D + + Q+ + L G LD++ GQ+VLD CAAPG
Sbjct: 197 IDAVPEAIALESAVPVEKLPGFA-DGEVSV-QDASAQLMGQLLDLEDGQRVLDACAAPGG 254
Query: 99 KLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIER 158
K +H AL + D + ALD + R+T++ E +++L LS+ D++R SS D
Sbjct: 255 KTSH-ALELADV-QMTALDIDRDRLTRVNENLRRLGLSA-DVRAADASR--PSSWWD--- 306
Query: 159 MKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFV 215
++ FDRILLDAPCSG G + P +L I +A+ QK LL A++
Sbjct: 307 ----EQPFDRILLDAPCSGSGVIRRHPDI----RWLRRPDDIARFADRQKNLLTALW--- 355
Query: 216 SLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEV--ELVQT 263
PLL G+LVY TCS+ E E V+ L R P+ E++ T
Sbjct: 356 --------PLLAPGGVLVYATCSIFKGEGEDVVKQFLVRIPDAKQEVIDT 397
>gi|118764303|gb|AAI28185.1| NOP2 protein [Homo sapiens]
Length = 812
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 94/295 (31%), Positives = 136/295 (46%), Gaps = 54/295 (18%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+ V DSS+ I P LAGHY L Q
Sbjct: 325 AQALINRGVNLDPLGKWSKTGLVVYDSSVPIGAT-PEYLAGHYMLQGASSMLPVMALAPQ 383
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDMC APG K +++A LM +TG ++A D + R+ + + +L +++ YD
Sbjct: 384 EHERILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYD 443
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANI 203
+ FDR+LLDAPCSG G + + N D+K I A++
Sbjct: 444 GRQFPKVVG-----------GFDRVLLDAPCSGTGV--ISKDPAVKTNKDEKDILRCAHL 490
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
QK+LL + V+ G G LVYCTCS++VEENE V+ + L + V LV T
Sbjct: 491 QKELLLSAIDSVNATSKTG-------GYLVYCTCSITVEENEWVVDYALKKR-NVRLVPT 542
Query: 264 LPQLGMKGLA-------HKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
G +G H L + +RF P N D GFFI K +K
Sbjct: 543 GLDFGQEGFTRFRERRLHPSLRS-----TRRF----YPHTHNMD--GFFIAKFKK 586
>gi|419642574|ref|ZP_14174363.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
ATCC 33560]
gi|380624468|gb|EIB43116.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
ATCC 33560]
Length = 292
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 137/280 (48%), Gaps = 44/280 (15%)
Query: 32 LSIYCYALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLD 91
+++YCY D + + LS + A + + +QN S L L+V+ GQ VLD
Sbjct: 55 INVYCYLFDAKDKAI-------LSSMK--AFNEAHFYIQNYSSYLCALNLEVKAGQSVLD 105
Query: 92 MCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTS 151
MCAAPG K ++A M +TG L + S+ R L++ +K +++ + + D I
Sbjct: 106 MCAAPGGKSINLANFMQNTGYLACNEISRDRFFILQKNLKNYGVNA-KVFMKDGKNIGNL 164
Query: 152 SQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAV 211
+ FD+ILLDAPCS F + F S+ K+IK+ A QKKLL +
Sbjct: 165 CPL----------KFDKILLDAPCSTFA-KIGFDLEKSY----KEIKNIAKTQKKLLHS- 208
Query: 212 YRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKG 271
+ LK G LVY TC+ + EENE VI L ++EL+ + ++
Sbjct: 209 ----------ALKALKIGGELVYSTCTFTKEENEEVIENALKSEFKLELL----DIDLEN 254
Query: 272 LAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
+ K ++E+ A + + ++P+ D GFFI KLRK
Sbjct: 255 VEAKAGQSEEFAEISK-CRRILPS---LDYDGFFIAKLRK 290
>gi|434388910|ref|YP_007099521.1| ribosomal RNA small subunit methyltransferase RsmB [Chamaesiphon
minutus PCC 6605]
gi|428019900|gb|AFY95994.1| ribosomal RNA small subunit methyltransferase RsmB [Chamaesiphon
minutus PCC 6605]
Length = 468
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 101/192 (52%), Gaps = 23/192 (11%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ + L H L QP + V+D CAAPG K THIA LM +TG ++ALDK+ R+ KL++
Sbjct: 253 IQDSSAQLVTHLLAPQPNEIVIDACAAPGGKTTHIAELMGNTGQVLALDKTASRLKKLQQ 312
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
+ +LQLS+I+ DS + + + DR+LLDAPCSG G + A+
Sbjct: 313 NLDRLQLSNIKVITGDSCGFSELTN-----------TADRVLLDAPCSGLGT--LHRRAD 359
Query: 189 SFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVI 248
+ + K+ A I + + W +K G+LVY TC++ ENE VI
Sbjct: 360 A-----RWQKTPAQIHELAQLQAQLLANTATW-----VKPGGVLVYATCTVCPIENEDVI 409
Query: 249 AWILHRHPEVEL 260
L HP+ ++
Sbjct: 410 LPFLKTHPDWQI 421
>gi|283797834|ref|ZP_06346987.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp.
M62/1]
gi|291074522|gb|EFE11886.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp.
M62/1]
Length = 472
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 77/250 (30%), Positives = 120/250 (48%), Gaps = 42/250 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+L S LAG V+ G V+D+C APG K HIA L+N TG + D S+ ++ +E+
Sbjct: 255 VQDLSSSLAGDAAGVKEGSHVIDVCGAPGGKSLHIAELLNGTGMVEVRDLSESKIALVED 314
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGF---GQRP-MF 184
I++ L +I+ V D+ + S+ E+ D ++ D PCSG G++P +
Sbjct: 315 NIRRSGLFNIEARVQDALEFDRDSE----------ETADLLIADLPCSGLGIMGRKPDIR 364
Query: 185 YNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
YN L + A +Q+++L V+R+V K G +VY TC++ EN
Sbjct: 365 YNMTREQTL-----ALAGLQREILSVVWRYV-----------KPGGTMVYSTCTIDRAEN 408
Query: 245 EAVIAWILHRHP--EVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTI 302
E AWIL P V+L + + + K L + + +Q P P D
Sbjct: 409 EENAAWILENLPFEPVDLTERIGEELAKTLCR---DTRKEGYVQLL-PGFYPGD------ 458
Query: 303 GFFICKLRKK 312
GFFI R+K
Sbjct: 459 GFFISVFRRK 468
>gi|222423014|dbj|BAH19490.1| AT5G55920 [Arabidopsis thaliana]
Length = 625
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 136/290 (46%), Gaps = 48/290 (16%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
+L RGV ++ + S+V V DS + I P LAG+Y L + +
Sbjct: 303 LLNRGVNLDPLSKWSKVGLVIYDSQVPIGAT-PEYLAGYYMLQGASSFLPVMALAPRENE 361
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+++D+ AAPG K T+IA LM +TG + A + PR+ L + ++ +++ YD
Sbjct: 362 RIVDVAAAPGGKTTYIAALMKNTGLIYANEMKVPRLKSLTANLHRMGVTNTIVCNYDGRE 421
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKL 207
+ L + + DR+LLDAPCSG G + +D +IK +A++QK+L
Sbjct: 422 LPKV---------LGQNTVDRVLLDAPCSGTGIISKDESVKITKTMD-EIKKFAHLQKQL 471
Query: 208 LQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQL 267
L A V G G +VY TCS+ V ENEAVI + L + +V+LV
Sbjct: 472 LLAAIDMVDANSKTG-------GYIVYSTCSIMVTENEAVIDYALKKR-DVKLVTCGLDF 523
Query: 268 GMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
G KG + RF P L T R N D GFF+ KL+K
Sbjct: 524 GRKGFT--------RFREHRFQPSLDKTRRFYPHVHNMD--GFFVAKLKK 563
>gi|398365157|ref|NP_014338.3| Nop2p [Saccharomyces cerevisiae S288c]
gi|730166|sp|P40991.1|NOP2_YEAST RecName: Full=Putative ribosomal RNA methyltransferase Nop2;
AltName: Full=Nucleolar protein 2
gi|576442|emb|CAA57979.1| Nop2p [Saccharomyces cerevisiae]
gi|1098483|gb|AAA99650.1| Ynl2428p [Saccharomyces cerevisiae]
gi|1301934|emb|CAA95934.1| NOP2 [Saccharomyces cerevisiae]
gi|190409050|gb|EDV12315.1| nucleolar protein NOP2 [Saccharomyces cerevisiae RM11-1a]
gi|207341676|gb|EDZ69664.1| YNL061Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|285814591|tpg|DAA10485.1| TPA: Nop2p [Saccharomyces cerevisiae S288c]
gi|392296931|gb|EIW08032.1| Nop2p [Saccharomyces cerevisiae CEN.PK113-7D]
gi|1093321|prf||2103264A nuclear protein
Length = 618
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 132/296 (44%), Gaps = 55/296 (18%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ ++V DS + I P LAGHY LD
Sbjct: 286 AQTLVNRGVNLQPIGSWTKVGLQIFDSQVPIGAT-PEYLAGHYILQAASSFLPVIALDPH 344
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDM AAPG K T+I+ +M +TG + A D +K R L I +L ++ YD
Sbjct: 345 ENERILDMAAAPGGKTTYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNTIVCNYD 404
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANI- 203
+ FDRILLDAPCSG G + + + + K + I
Sbjct: 405 AREFPKVIG-----------GFDRILLDAPCSGTG----VIGKDQSVKVSRTEKDFIQIP 449
Query: 204 --QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
QK+LL + V G G++VY TCS++VEE+EAVI + L + P V+LV
Sbjct: 450 HLQKQLLLSAIDSVDCNSKHG-------GVIVYSTCSVAVEEDEAVIDYALRKRPNVKLV 502
Query: 262 QTLPQLGMKGLAHKDLEAEDQAVMQRFGPPL------IPTDRNTDTIGFFICKLRK 311
T +G EA ++F P + P N D GFF+ K +K
Sbjct: 503 DTGLAIGK--------EAFTSYRGKKFHPSVKLARRYYPHTYNVD--GFFVAKFQK 548
>gi|323307446|gb|EGA60720.1| Nop2p [Saccharomyces cerevisiae FostersO]
Length = 618
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 132/296 (44%), Gaps = 55/296 (18%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ ++V DS + I P LAGHY LD
Sbjct: 286 AQTLVNRGVNLQPIGSWTKVGLQIFDSQVPIGAT-PEYLAGHYILQAASSFLPVIALDPH 344
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDM AAPG K T+I+ +M +TG + A D +K R L I +L ++ YD
Sbjct: 345 ENERILDMAAAPGGKTTYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNTIVCNYD 404
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANI- 203
+ FDRILLDAPCSG G + + + + K + I
Sbjct: 405 AREFPKVIG-----------GFDRILLDAPCSGTG----VIGKDQSVKVSRTEKDFIQIP 449
Query: 204 --QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
QK+LL + V G G++VY TCS++VEE+EAVI + L + P V+LV
Sbjct: 450 HLQKQLLLSAIDSVDCNSKHG-------GVIVYSTCSVAVEEDEAVIDYALRKRPNVKLV 502
Query: 262 QTLPQLGMKGLAHKDLEAEDQAVMQRFGPPL------IPTDRNTDTIGFFICKLRK 311
T +G EA ++F P + P N D GFF+ K +K
Sbjct: 503 DTGLAIGK--------EAFTSYRGKKFHPSVKLARRYYPHTYNVD--GFFVAKFQK 548
>gi|51013571|gb|AAT93079.1| YNL061W [Saccharomyces cerevisiae]
Length = 618
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 132/296 (44%), Gaps = 55/296 (18%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ ++V DS + I P LAGHY LD
Sbjct: 286 AQTLVNRGVNLQPIGSWTKVGLQIFDSQVPIGAT-PEYLAGHYILQAASSFLPVIALDPH 344
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDM AAPG K T+I+ +M +TG + A D +K R L I +L ++ YD
Sbjct: 345 ENERILDMAAAPGGKTTYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNTIVCNYD 404
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANI- 203
+ FDRILLDAPCSG G + + + + K + I
Sbjct: 405 AREFPKVIG-----------GFDRILLDAPCSGTG----VIGKDQSVKVSRTEKDFIQIP 449
Query: 204 --QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
QK+LL + V G G++VY TCS++VEE+EAVI + L + P V+LV
Sbjct: 450 HLQKQLLLSAIDSVDCNSKHG-------GVIVYSTCSVAVEEDEAVIDYALRKRPNVKLV 502
Query: 262 QTLPQLGMKGLAHKDLEAEDQAVMQRFGPPL------IPTDRNTDTIGFFICKLRK 311
T +G EA ++F P + P N D GFF+ K +K
Sbjct: 503 DTGLAIGK--------EAFTSYRGKKFHPSVKLARRYYPHTYNVD--GFFVAKFQK 548
>gi|428181575|gb|EKX50438.1| hypothetical protein GUITHDRAFT_103672 [Guillardia theta CCMP2712]
Length = 311
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 121/253 (47%), Gaps = 35/253 (13%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+++ P+ L+ + G++VLDMCAAPG K THIA LM D G +++ D+S +V K+++
Sbjct: 82 IESFPAAFTSLLLEPKSGERVLDMCAAPGGKSTHIAQLMKDRGEVVSCDRSSSKVEKIQQ 141
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
+ S+ ++ + D++LLD PCS G RP
Sbjct: 142 LATRYSKSASSPNMPEP---------------------DKVLLDPPCSALGLRPSL---R 177
Query: 189 SFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVI 248
N + +Q L + + Q + LK G LVY TC+L+ +ENE +
Sbjct: 178 VASNSAWSASRSSRLQADSLHQLQLYQRQMIRQAVMALKPGGRLVYSTCTLNPQENEGNV 237
Query: 249 AWILHRHPEVELVQ-TLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDT------ 301
AW+L R+ +V+LV+ L LG+ G++ LE +D + RF P + + DT
Sbjct: 238 AWML-RNFDVQLVEHPLASLGLHGMSCPGLEDDDARKLFRFVPGTLLQLQRIDTNELEDV 296
Query: 302 ---IGFFICKLRK 311
GFF L+K
Sbjct: 297 DLFPGFFAACLQK 309
>gi|419536950|ref|ZP_14076422.1| NOL1/NOP2/sun family protein [Campylobacter coli 111-3]
gi|419540436|ref|ZP_14079672.1| NOL1/NOP2/sun family protein [Campylobacter coli Z163]
gi|419564247|ref|ZP_14101630.1| NOL1/NOP2/sun family protein [Campylobacter coli 1098]
gi|419580040|ref|ZP_14116423.1| NOL1/NOP2/sun family protein [Campylobacter coli 1948]
gi|419582445|ref|ZP_14118643.1| NOL1/NOP2/sun family protein [Campylobacter coli 1961]
gi|419602647|ref|ZP_14137224.1| NOL1/NOP2/sun family protein [Campylobacter coli 151-9]
gi|419614160|ref|ZP_14147947.1| NOL1/NOP2/sun family protein [Campylobacter coli H56]
gi|419616383|ref|ZP_14150031.1| NOL1/NOP2/sun family protein [Campylobacter coli Z156]
gi|380516782|gb|EIA42908.1| NOL1/NOP2/sun family protein [Campylobacter coli Z163]
gi|380517020|gb|EIA43144.1| NOL1/NOP2/sun family protein [Campylobacter coli 111-3]
gi|380542854|gb|EIA67080.1| NOL1/NOP2/sun family protein [Campylobacter coli 1098]
gi|380555637|gb|EIA78939.1| NOL1/NOP2/sun family protein [Campylobacter coli 1948]
gi|380564881|gb|EIA87671.1| NOL1/NOP2/sun family protein [Campylobacter coli 1961]
gi|380580941|gb|EIB02676.1| NOL1/NOP2/sun family protein [Campylobacter coli 151-9]
gi|380593035|gb|EIB13881.1| NOL1/NOP2/sun family protein [Campylobacter coli H56]
gi|380595763|gb|EIB16487.1| NOL1/NOP2/sun family protein [Campylobacter coli Z156]
Length = 291
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 132/284 (46%), Gaps = 44/284 (15%)
Query: 28 QRPSLSIYCYALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQ 87
+ L+ YCY LF+ I + + A + +QN S L LDV+ GQ
Sbjct: 51 EYEKLNEYCY----LFKACDKSILSSMQ-----AFNEFKFYIQNYASYLCALNLDVKAGQ 101
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
VLDMCAAPG K ++A M + G L + SK R L++ +K ++ V+
Sbjct: 102 SVLDMCAAPGGKSINLANFMQNEGYLACNEASKDRFFTLQKNLKNY---GVKARVFMKDG 158
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKL 207
N + ++ FD+ILLDAPCS + + +S K+IK+ A +QKKL
Sbjct: 159 KNIGNLCPLK--------FDKILLDAPCSTLAKMGLELEKSS-----KEIKNIAKLQKKL 205
Query: 208 LQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQL 267
L + + LK G LVY TC+ + EENE VI L ++EL+ +
Sbjct: 206 LHS-----------ALKALKVGGELVYSTCTFTKEENEEVIENALKSDFDIELLDINLE- 253
Query: 268 GMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
LA +E +A+ + ++P + + GFFI KLRK
Sbjct: 254 --NALAKNGQSSEFEAISK--CKRILPCE---EYDGFFIAKLRK 290
>gi|254556524|ref|YP_003062941.1| rRNA methylase () [Lactobacillus plantarum JDM1]
gi|254045451|gb|ACT62244.1| rRNA methylase (putative) [Lactobacillus plantarum JDM1]
Length = 447
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 84/256 (32%), Positives = 128/256 (50%), Gaps = 40/256 (15%)
Query: 61 ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMN--DTGTLIALDK 118
A+ M +Q+ + L L++QP +VLD CAAPG K T IA ++ GT++ALD
Sbjct: 228 AMRYGMFTVQDESAQLVVPALNLQPSDRVLDACAAPGGKTTQIAASLDAEQGGTVVALDI 287
Query: 119 SKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ--KESFDRILLDAPCS 176
+V + + ++ HV D ++++D +++ Q ESFDRIL+DAPCS
Sbjct: 288 HANKVKLIGQNAARM-------HVADRVE---ATELDARKVETQFNAESFDRILVDAPCS 337
Query: 177 GFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT 236
G G + +K+++ N+Q+ L A+ V+ P LKK GI+ Y T
Sbjct: 338 GLG----LMRRKPEIRYEKQLQDSLNLQRIQL-AILTAVA-------PTLKKGGIMTYST 385
Query: 237 CSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTD 296
C++ +EN+ VI L HP+ EL QT P +DL+ + + P D
Sbjct: 386 CTILQQENQDVITKFLADHPDFEL-QTTP-------TERDLKTDRTEKTL----SIYPDD 433
Query: 297 RNTDTIGFFICKLRKK 312
+D GFFI LRKK
Sbjct: 434 YLSD--GFFIACLRKK 447
>gi|151944473|gb|EDN62751.1| nucleolar protein [Saccharomyces cerevisiae YJM789]
gi|349580877|dbj|GAA26036.1| K7_Nop2p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 618
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 132/296 (44%), Gaps = 55/296 (18%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ ++V DS + I P LAGHY LD
Sbjct: 286 AQTLVNRGVNLQPIGSWTKVGLQIFDSQVPIGAT-PEYLAGHYILQAASSFLPVIALDPH 344
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDM AAPG K T+I+ +M +TG + A D +K R L I +L ++ YD
Sbjct: 345 ENERILDMAAAPGGKTTYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNTIVCNYD 404
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANI- 203
+ FDRILLDAPCSG G + + + + K + I
Sbjct: 405 AREFPKVIG-----------GFDRILLDAPCSGTG----VIGKDQSVKVSRTEKDFIQIP 449
Query: 204 --QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
QK+LL + V G G++VY TCS++VEE+EAVI + L + P V+LV
Sbjct: 450 HLQKQLLLSAIDSVDCNSKHG-------GVIVYSTCSVAVEEDEAVIDYALRKRPNVKLV 502
Query: 262 QTLPQLGMKGLAHKDLEAEDQAVMQRFGPPL------IPTDRNTDTIGFFICKLRK 311
T +G EA ++F P + P N D GFF+ K +K
Sbjct: 503 DTGLAIGK--------EAFTSYRGKKFHPSVKLARRYYPHTYNVD--GFFVAKFQK 548
>gi|365763345|gb|EHN04874.1| Nop2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 602
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 132/296 (44%), Gaps = 55/296 (18%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ ++V DS + I P LAGHY LD
Sbjct: 286 AQTLVNRGVNLQPIGSWTKVGLQIFDSQVPIGAT-PEYLAGHYILQAASSFLPVIALDPH 344
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDM AAPG K T+I+ +M +TG + A D +K R L I +L ++ YD
Sbjct: 345 ENERILDMAAAPGGKTTYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNTIVCNYD 404
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANI- 203
+ FDRILLDAPCSG G + + + + K + I
Sbjct: 405 AREFPKVIG-----------GFDRILLDAPCSGTG----VIGKDQSVKVSRTEKDFIQIP 449
Query: 204 --QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
QK+LL + V G G++VY TCS++VEE+EAVI + L + P V+LV
Sbjct: 450 HLQKQLLLSAIDSVDCNSKHG-------GVIVYSTCSVAVEEDEAVIDYALRKRPNVKLV 502
Query: 262 QTLPQLGMKGLAHKDLEAEDQAVMQRFGPPL------IPTDRNTDTIGFFICKLRK 311
T +G EA ++F P + P N D GFF+ K +K
Sbjct: 503 DTGLAIGK--------EAFTSYRGKKFHPSVKLARRYYPHTYNVD--GFFVAKFQK 548
>gi|241958522|ref|XP_002421980.1| RNA m(5)C methyltransferase, putative [Candida dubliniensis CD36]
gi|223645325|emb|CAX39981.1| RNA m(5)C methyltransferase, putative [Candida dubliniensis CD36]
Length = 620
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 85/269 (31%), Positives = 122/269 (45%), Gaps = 44/269 (16%)
Query: 55 SQVPNVALDSSMG---ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTG 111
SQVP A + ILQ S L L+ Q +++LDM AAPG K T+I+ LM +TG
Sbjct: 318 SQVPIGATPEYLAGQYILQAASSFLPVMALEPQENERILDMAAAPGGKTTYISALMKNTG 377
Query: 112 TLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILL 171
+ A D +K R L I +L + YD+ FDR+LL
Sbjct: 378 CVFANDANKARTKSLIANIHRLGCKNTIVCNYDAREFPKVIG-----------GFDRVLL 426
Query: 172 DAPCSGFGQRPMFYNANSFLNLDKKIKSYANI---QKKLLQAVYRFVSLFDWQGIPLLKK 228
DAPCSG G + + + + K + I QK+LL + V G
Sbjct: 427 DAPCSGTG----VIAKDESVKVSRTEKDFMQIPHLQKQLLLSAIDSVDAHSSTG------ 476
Query: 229 DGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRF 288
G++VY TCS++V+ENEAV+ + L + P V+LV T +G +G + F
Sbjct: 477 -GVIVYSTCSIAVDENEAVVDYALRKRPNVKLVDTGLTIGKEGFT--------SYRGKHF 527
Query: 289 GPPLIPTDR------NTDTIGFFICKLRK 311
P + T R N D GF++ K +K
Sbjct: 528 NPKISLTRRYYPHTYNVD--GFYVAKFKK 554
>gi|339635011|ref|YP_004726652.1| rRNA methylase [Weissella koreensis KACC 15510]
gi|338854807|gb|AEJ23973.1| rRNA methylase (putative) [Weissella koreensis KACC 15510]
Length = 454
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 80/262 (30%), Positives = 127/262 (48%), Gaps = 37/262 (14%)
Query: 61 ALDSSMGIL--QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDK 118
++D + G++ Q + L G QP +KVLD+ AAPG K TH+A MN G L++ +
Sbjct: 70 SVDHTTGLIYSQEPSAQLVGEIAHPQPDEKVLDLAAAPGGKTTHLASFMNQKGLLVSNEI 129
Query: 119 SKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGF 178
K R L E +++ + + + ++ E + FDRI+LDAPCSG
Sbjct: 130 FKKRAQILSENVER----------FGAKNVLVTNHAPAELVPKFAGYFDRIVLDAPCSGE 179
Query: 179 GQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS 238
G +A + ++D + A +Q+++L + + +LK G L+Y TC+
Sbjct: 180 GMFRKDPDAMQYWDVDYPSRC-AKLQREILV-----------EALKMLKSGGELIYSTCT 227
Query: 239 LSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR- 297
+ EE+E +IAW+L +PE+EL +P KG+ E D P L+ T R
Sbjct: 228 FAPEEDEQIIAWLLDSYPELEL---MPIDKPKGVDDGRPEWADG------NPELVKTARL 278
Query: 298 ---NTDTIGFFICKLRKKYGEA 316
+ D G FI LR K +A
Sbjct: 279 FPHHLDGEGHFIAHLRLKEADA 300
>gi|340726578|ref|XP_003401633.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
[Bombus terrestris]
Length = 602
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 91/277 (32%), Positives = 129/277 (46%), Gaps = 61/277 (22%)
Query: 55 SQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQKVLDMCAAPGNKLT 101
SQVP MG P LAGHY LD + ++VLDMCAAPG K +
Sbjct: 350 SQVP-------MGAT---PEYLAGHYILQGASSFLPVMALDPKENERVLDMCAAPGGKSS 399
Query: 102 HIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKL 161
HIA LM +TG L + D ++ R+ + +L +++ YD ++ T +
Sbjct: 400 HIAALMKNTGVLFSNDVNEERIKAVVGNFHRLGITNSIVCTYDGRKLPTVIK-------- 451
Query: 162 QKESFDRILLDAPCSGFGQRPMFYNANSFLNLDK-KIKSYANIQKKLLQAVYRFVSLFDW 220
FDR+LLDAPC+G G + + + N D+ I+ +QK+LL A +
Sbjct: 452 ---GFDRVLLDAPCTGTG--VVSKDPSVKTNKDEVDIQRCCTLQKELLLAAIDCANARSE 506
Query: 221 QGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAE 280
G GI+VY TCS+ EENE VI + L + +V+L+ T + G +G
Sbjct: 507 SG-------GIIVYSTCSILPEENEWVIDFALKKR-DVKLIPTGLEFGAEGFT------- 551
Query: 281 DQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
RF P L T R N D GFF+ KL+K
Sbjct: 552 -SYRQYRFHPSLKLTKRFYPHVHNMD--GFFVAKLKK 585
>gi|415746274|ref|ZP_11475429.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
327]
gi|315931834|gb|EFV10789.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
327]
Length = 279
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 137/280 (48%), Gaps = 44/280 (15%)
Query: 32 LSIYCYALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLD 91
++ YCY D + + LS + A + + +QN S L L+V+ GQ+VLD
Sbjct: 42 INAYCYLFDAKDKAI-------LSSMK--AFNEAHFYIQNYSSYLCALNLEVKAGQRVLD 92
Query: 92 MCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTS 151
MCAAPG K ++A M +TG L + S+ R L++ +K +++ + + D I
Sbjct: 93 MCAAPGGKSINLANFMQNTGYLACNEMSRDRFFILQKNLKNYGVNA-KVFMKDGKNIGNL 151
Query: 152 SQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAV 211
+ FD+ILLDAPCS F + F S+ K+IK+ A QKKLL +
Sbjct: 152 CPL----------KFDKILLDAPCSTFA-KIGFDLEKSY----KEIKNIAKTQKKLLHS- 195
Query: 212 YRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKG 271
+ LK G LVY TC+ + EENE VI L ++EL+ + ++
Sbjct: 196 ----------ALKALKIGGELVYSTCTFTKEENEEVIENALKSEFKLELL----DIDLEN 241
Query: 272 LAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
+ K ++E+ A + + ++P+ D GFFI KLRK
Sbjct: 242 VEAKAGQSEEFAEISK-CRRILPS---LDYDGFFIAKLRK 277
>gi|433655119|ref|YP_007298827.1| ribosomal RNA small subunit methyltransferase RsmB
[Thermoanaerobacterium thermosaccharolyticum M0795]
gi|433293308|gb|AGB19130.1| ribosomal RNA small subunit methyltransferase RsmB
[Thermoanaerobacterium thermosaccharolyticum M0795]
Length = 447
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 129/254 (50%), Gaps = 54/254 (21%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ +++ L +P V+D+C+APG K TH++ LMN+ G ++A D + ++ ++
Sbjct: 235 VQDEGAMIISKVLSPKPDDMVMDVCSAPGGKTTHLSQLMNNKGKIVAFDIYEHKIDLIKR 294
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
++L + ++ V+DST++N S ID D++L+D PCSG G ++P
Sbjct: 295 NCRRLGIDNVDAFVFDSTKVN-SEYID---------KADKVLVDVPCSGIGIIRKKP--- 341
Query: 186 NANSFLNLDKKIKSYA--------NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC 237
D K+K+Y NIQ ++L + ++V K+ G ++Y TC
Sbjct: 342 --------DIKLKNYTKKDFEELNNIQYRILSSSSKYV-----------KRGGYILYSTC 382
Query: 238 SLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR 297
++ EEN ++ L+ + E ++ L K ++ D D+ +Q L+P
Sbjct: 383 TIGREENMNIVDKFLNENKEFKISDIRSFLPEKLTSYVD----DRGCIQ-----LLPNIN 433
Query: 298 NTDTIGFFICKLRK 311
NTD GFFICK+++
Sbjct: 434 NTD--GFFICKMQR 445
>gi|419623566|ref|ZP_14156693.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
LMG 23218]
gi|424849560|ref|ZP_18274011.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
D2600]
gi|356487375|gb|EHI17326.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
D2600]
gi|380600684|gb|EIB21012.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
LMG 23218]
Length = 292
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 90/283 (31%), Positives = 136/283 (48%), Gaps = 50/283 (17%)
Query: 32 LSIYCYALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLD 91
++ YCY D + + LS + A + + +QN S L L+V+ GQ+VLD
Sbjct: 55 INAYCYLFDAKDKAI-------LSSMK--AFNEAHFYIQNYSSYLCALNLEVKAGQRVLD 105
Query: 92 MCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTS 151
MCAAPG K ++A M +TG L + S+ R L++ +K +++ + + D I
Sbjct: 106 MCAAPGGKSINLANFMQNTGYLACNEMSRDRFFILQKNLKNYGVNA-KVFMKDGKNIGNL 164
Query: 152 SQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAV 211
+ FD+ILLDAPCS F + F S+ K+IK+ A QKKLL +
Sbjct: 165 CPL----------KFDKILLDAPCSTFA-KIGFDLEKSY----KEIKNIAKTQKKLLHS- 208
Query: 212 YRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKG 271
+ LK G LVY TC+ + EENE VI L ++EL+ + ++
Sbjct: 209 ----------ALKALKIGGELVYSTCTFTKEENEEVIENALKSEFKLELL----DIDLEN 254
Query: 272 LAHKDLEAEDQAVM---QRFGPPLIPTDRNTDTIGFFICKLRK 311
+ K ++E+ A + +R P L D GFFI KLRK
Sbjct: 255 VEAKAGQSEEFAEILKCRRILPSL-------DYDGFFIAKLRK 290
>gi|448470216|ref|ZP_21600413.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum kocurii JCM
14978]
gi|445808294|gb|EMA58366.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum kocurii JCM
14978]
Length = 316
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 84/250 (33%), Positives = 122/250 (48%), Gaps = 33/250 (13%)
Query: 74 SILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKL 133
S+L G LD QPG++V D CAAPG+K T IA M D GT++A D + R++ L ++L
Sbjct: 87 SVLPGLALDPQPGERVWDACAAPGSKTTQIADAMGDEGTVVANDNNLGRLSALRHNAERL 146
Query: 134 QLSSIQTHVYDSTRINTSSQIDIERMK-LQKESFDRILLDAPCSGFGQRPMFYNANSFLN 192
+++ D+ + MK L + FDR L+DAPCS G +
Sbjct: 147 GITNAIVTNQDARNFS---------MKPLAFDEFDRALVDAPCSCEGTCRKNPDVVDQWT 197
Query: 193 LDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWIL 252
LD + + A IQK +L + + + G +VY TC+ + EENEAV+ +L
Sbjct: 198 LD-HVHAVAGIQKGILA-----------RAVQATRPGGTVVYSTCTFAPEENEAVLDHVL 245
Query: 253 HRHPEVELVQ-TLPQLGMKGLAHKDLEAEDQAVMQ--RFGPPLIPTDRNTDTIGFFICKL 309
+ E+V LP + G+ D E D++V + R P + DT GFF KL
Sbjct: 246 AAE-DCEVVAFDLPLDTVPGVTEWDGETYDESVTRAHRVYP------HHNDTGGFFCAKL 298
Query: 310 RKKYGEAPEI 319
R GEA E
Sbjct: 299 RVG-GEAGET 307
>gi|347522574|ref|YP_004780144.1| NOL1/NOP2/sun family RNA methylase [Pyrolobus fumarii 1A]
gi|343459456|gb|AEM37892.1| RNA methylase, NOL1/NOP2/sun family [Pyrolobus fumarii 1A]
Length = 460
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 99/183 (54%), Gaps = 23/183 (12%)
Query: 81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQT 140
LD +PG+ V+DMCAAPG K TH+A LM + G + A D R+ +++ +K++ + +
Sbjct: 262 LDPKPGETVVDMCAAPGGKTTHLAELMKNQGRIYAFDIDDARIKRMKMLLKRMGIKIVTI 321
Query: 141 HVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN-SFLNLDKKIKS 199
+ D+ + DI L +E D++LLDAPC+ G + N + + ++
Sbjct: 322 YKEDAGKAP-----DI----LGEEVADKVLLDAPCTSTGT--IMKNPELRWRVREDGLEE 370
Query: 200 YANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVE 259
Q++LL+A R LLK G L+Y TCSL EENE + W+L RHPE+
Sbjct: 371 IVREQRRLLEAAVR-----------LLKPGGRLLYTTCSLLPEENEENVRWLLKRHPELR 419
Query: 260 LVQ 262
+V+
Sbjct: 420 VVE 422
>gi|205355486|ref|ZP_03222257.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
CG8421]
gi|205346720|gb|EDZ33352.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
CG8421]
Length = 279
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 137/280 (48%), Gaps = 44/280 (15%)
Query: 32 LSIYCYALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLD 91
++ YCY D + + LS + A + + +QN S L L+V+ GQ+VLD
Sbjct: 42 INAYCYLFDAKDKAI-------LSSMK--AFNEAHFYIQNYSSYLCALNLEVKAGQRVLD 92
Query: 92 MCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTS 151
MCAAPG K ++A M +TG L + S+ R L++ +K +++ + + D I
Sbjct: 93 MCAAPGGKSINLANFMQNTGYLACNEMSRDRFFILQKNLKNYGVNA-KVFMKDGKNIGNL 151
Query: 152 SQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAV 211
+ FD+ILLDAPCS F + F S+ K+IK+ A QKKLL +
Sbjct: 152 CPL----------KFDKILLDAPCSTFA-KIGFDLEKSY----KEIKNIAKTQKKLLHS- 195
Query: 212 YRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKG 271
+ LK G LVY TC+ + EENE VI L ++EL+ + ++
Sbjct: 196 ----------ALKALKIGGELVYSTCTFTKEENEEVIENALKSEFKLELL----DIDLEN 241
Query: 272 LAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
+ K ++E+ A + + ++P+ D GFFI KLRK
Sbjct: 242 VEAKAGQSEEFAEISK-CRRILPS---LDYDGFFIAKLRK 277
>gi|375082408|ref|ZP_09729468.1| tRNA/RNA cytosine-C5-methylase [Thermococcus litoralis DSM 5473]
gi|374742901|gb|EHR79279.1| tRNA/RNA cytosine-C5-methylase [Thermococcus litoralis DSM 5473]
Length = 450
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 123/245 (50%), Gaps = 39/245 (15%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
++Q+L S H L + G++VLD+ AAPG+K H+A LM +TG ++A+D S R+ K++
Sbjct: 244 VIQDLASAYVAHVLAPEKGERVLDLAAAPGSKTFHVAHLMENTGKIVAVDYSAERLQKMK 303
Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ-KESFDRILLDAPCSGFGQRPMFYN 186
+K L + +++ + + MK + KE FD+I+LDAPCS G F
Sbjct: 304 AKMKVLGVKNVKL-------------VHADGMKFKDKEPFDKIILDAPCSSSGTYRQFPE 350
Query: 187 ANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEA 246
+ +KKIK +QK +++ Y+ L++ G + Y TCS+ V+ENE
Sbjct: 351 VKWRFD-EKKIKKVIQVQKAMIRNAYK-----------NLREGGEMTYSTCSIRVDENEE 398
Query: 247 VIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFI 306
I + +++ ELV G KG+ E D+ V + F D FFI
Sbjct: 399 NIKYAMNK-VGFELVDYPFSWGEKGVT----EIGDK-VFRSFTHL-------HDCNSFFI 445
Query: 307 CKLRK 311
KL+K
Sbjct: 446 AKLKK 450
>gi|259149299|emb|CAY82541.1| Nop2p [Saccharomyces cerevisiae EC1118]
Length = 618
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 132/296 (44%), Gaps = 55/296 (18%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ ++V DS + I P LAGHY LD
Sbjct: 286 AQTLVNRGVNLQPIGSWTKVGLQIFDSQVPIGAT-PEYLAGHYILQAASSFLPVIALDPH 344
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDM AAPG K T+I+ +M +TG + A D +K R L I +L ++ YD
Sbjct: 345 ENERILDMAAAPGGKTTYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNTIVCNYD 404
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANI- 203
+ FDRILLDAPCSG G + + + + K + I
Sbjct: 405 AREFPKVIG-----------GFDRILLDAPCSGTG----VIGKDQSVKVSRTEKDFIQIP 449
Query: 204 --QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
QK+LL + V G G++VY TCS++VEE+EAVI + L + P V+LV
Sbjct: 450 HLQKQLLLSAIDSVDCNSKHG-------GVIVYSTCSVAVEEDEAVIDYALRKRPNVKLV 502
Query: 262 QTLPQLGMKGLAHKDLEAEDQAVMQRFGPPL------IPTDRNTDTIGFFICKLRK 311
T +G EA ++F P + P N D GFF+ K +K
Sbjct: 503 DTGLAIGK--------EAFTSYRGKKFHPSVKLARRYYPHTYNVD--GFFVAKFQK 548
>gi|391342347|ref|XP_003745482.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
[Metaseiulus occidentalis]
Length = 577
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 92/294 (31%), Positives = 136/294 (46%), Gaps = 59/294 (20%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
+L RGV ++ S+V V +S + I P L+GHY LD + +
Sbjct: 305 LLNRGVNLDPIGEWSKVGLVIYNSQVPIGAT-PEYLSGHYMLQGAASMLPVMALDPKENE 363
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDS-- 145
K+LD+CAAPG K +HI LM +TG L A D R + + +L +++ D
Sbjct: 364 KILDLCAAPGGKTSHIGALMKNTGVLFANDSQPDRCKAVIANLHRLGVTNAVVSTMDGRK 423
Query: 146 -TRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQ 204
T++ T FDR+L+DAPCSG G + + + +K I +++Q
Sbjct: 424 FTKVMT--------------GFDRVLVDAPCSGSGVVSKDEHVKTSKD-EKDILRCSHLQ 468
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWIL-HRHPEVELVQT 263
K+LL A + D G +VY TCS+ EENE VI + L HRH VE+V +
Sbjct: 469 KELLLAA---IDCVDSNSSA-----GFVVYSTCSVLPEENECVIDYALKHRH--VEIVDS 518
Query: 264 LPQLGMKGLAHKDLEAEDQAVMQRFGPPL------IPTDRNTDTIGFFICKLRK 311
+ G +GL + RF P + P N + GFF+CKL+K
Sbjct: 519 SLKFGREGLP--------RYREHRFNPNMNLARRFYPHTHNME--GFFVCKLKK 562
>gi|30696661|ref|NP_850927.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein
[Arabidopsis thaliana]
gi|9758212|dbj|BAB08657.1| nucleolar protein-like [Arabidopsis thaliana]
gi|332009316|gb|AED96699.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein
[Arabidopsis thaliana]
Length = 682
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 136/290 (46%), Gaps = 48/290 (16%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
+L RGV ++ + S+V V DS + I P LAG+Y L + +
Sbjct: 303 LLNRGVNLDPLSKWSKVGLVIYDSQVPIGAT-PEYLAGYYMLQGASSFLPVMALAPRENE 361
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+++D+ AAPG K T+IA LM +TG + A + PR+ L + ++ +++ YD
Sbjct: 362 RIVDVAAAPGGKTTYIAALMKNTGLIYANEMKVPRLKSLTANLHRMGVTNTIVCNYDGRE 421
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKL 207
+ L + + DR+LLDAPCSG G + +D +IK +A++QK+L
Sbjct: 422 LPKV---------LGQNTVDRVLLDAPCSGTGIISKDESVKITKTMD-EIKKFAHLQKQL 471
Query: 208 LQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQL 267
L A V G G +VY TCS+ V ENEAVI + L + +V+LV
Sbjct: 472 LLAAIDMVDANSKTG-------GYIVYSTCSIMVTENEAVIDYALKKR-DVKLVTCGLDF 523
Query: 268 GMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
G KG + RF P L T R N D GFF+ KL+K
Sbjct: 524 GRKGFT--------RFREHRFQPSLDKTRRFYPHVHNMD--GFFVAKLKK 563
>gi|365985658|ref|XP_003669661.1| hypothetical protein NDAI_0D01050 [Naumovozyma dairenensis CBS 421]
gi|343768430|emb|CCD24418.1| hypothetical protein NDAI_0D01050 [Naumovozyma dairenensis CBS 421]
Length = 625
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 88/269 (32%), Positives = 122/269 (45%), Gaps = 44/269 (16%)
Query: 55 SQVPNVALDSSMG---ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTG 111
SQVP A + ILQ S L LD +++LDM AAPG K T+I+ LM +TG
Sbjct: 319 SQVPIGATPEYLAGNYILQAASSFLPVIALDPHENERILDMAAAPGGKTTYISALMKNTG 378
Query: 112 TLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILL 171
T+ A D +K R L I +L ++ YD+ FDRILL
Sbjct: 379 TVFANDANKNRTKSLIANIHRLGCTNTIVCNYDAREFPKVIG-----------GFDRILL 427
Query: 172 DAPCSGFGQRPMFYNANSFLNLDKKIKSYANI---QKKLLQAVYRFVSLFDWQGIPLLKK 228
DAPCSG G + + + + K + I QK+LL + V G
Sbjct: 428 DAPCSGTG----VIGKDQSVKVSRTEKDFIQIPHLQKQLLLSAIDSVDCNSKHG------ 477
Query: 229 DGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRF 288
GI+VY TCS++VEE+EAV+ + L + P V+LV T +G G + F
Sbjct: 478 -GIIVYSTCSVAVEEDEAVVDYALRKRPNVKLVDTGLAIGKDGFT--------SFRGKNF 528
Query: 289 GPPLIPTDR------NTDTIGFFICKLRK 311
P + T R N D GF++ K +K
Sbjct: 529 HPSIKLTKRYYPHTYNVD--GFYVAKFQK 555
>gi|323335828|gb|EGA77107.1| Nop2p [Saccharomyces cerevisiae Vin13]
Length = 618
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 132/296 (44%), Gaps = 55/296 (18%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ ++V DS + I P LAGHY LD
Sbjct: 286 AQTLVNRGVNLQPIGSWTKVGLQIFDSQVPIGAT-PEYLAGHYILQAASSFLPVIALDPH 344
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDM AAPG K T+I+ +M +TG + A D +K R L I +L ++ YD
Sbjct: 345 ENERILDMAAAPGGKTTYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNTIVCNYD 404
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANI- 203
+ FDRILLDAPCSG G + + + + K + I
Sbjct: 405 AREFPKVIG-----------GFDRILLDAPCSGTG----VIGKDQSVKVSRTEKDFIQIP 449
Query: 204 --QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
QK+LL + V G G++VY TCS++VEE+EAVI + L + P V+LV
Sbjct: 450 HLQKQLLLSAIDSVDCNSKHG-------GVIVYSTCSVAVEEDEAVIDYALRKRPNVKLV 502
Query: 262 QTLPQLGMKGLAHKDLEAEDQAVMQRFGPPL------IPTDRNTDTIGFFICKLRK 311
T +G EA ++F P + P N D GFF+ K +K
Sbjct: 503 DTGLAIGK--------EAFTSYRGKKFHPSVKLARRYYPHTYNVD--GFFVAKFQK 548
>gi|398818322|ref|ZP_10576914.1| ribosomal RNA small subunit methyltransferase RsmB [Brevibacillus
sp. BC25]
gi|398028090|gb|EJL21614.1| ribosomal RNA small subunit methyltransferase RsmB [Brevibacillus
sp. BC25]
Length = 448
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 77/249 (30%), Positives = 127/249 (51%), Gaps = 41/249 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L L +PG +VLD CAAPG K THIA +M + G +IA D + +
Sbjct: 235 IQDESSMLVAPALAAEPGMRVLDACAAPGGKTTHIAEMMGNRGQIIASDVHAHKRDLIAS 294
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP-MF 184
K+L ++ I+ V D+ +D+ L +FDRILLDAPC+GFG ++P +
Sbjct: 295 AAKRLGITIIEPIVSDA--------LDLPEQALG--TFDRILLDAPCTGFGVIRRKPDLK 344
Query: 185 YNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
+N + +++ A +Q +LL+ + +L + G++VY TC++ EN
Sbjct: 345 WNKTP-----EDVRAIAQLQYELLKTL-----------ASMLAQGGVMVYSTCTIEPAEN 388
Query: 245 EAVIAWILHRHPEVELVQTLPQ-LGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIG 303
+ ++ + HP+ L TL Q L H D E A +Q ++P +D G
Sbjct: 389 QEIVRRFVEEHPDFVLDDTLAQDLPEAVRGHVD---ETGACVQ-----ILPHHFESD--G 438
Query: 304 FFICKLRKK 312
FFI +L+++
Sbjct: 439 FFIARLKRR 447
>gi|156098789|ref|XP_001615410.1| proliferating-cell nucleolar antigen p120 [Plasmodium vivax Sal-1]
gi|148804284|gb|EDL45683.1| proliferating-cell nucleolar antigen p120, putative [Plasmodium
vivax]
Length = 615
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 83/274 (30%), Positives = 126/274 (45%), Gaps = 53/274 (19%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
+LQ+ S++ L+V P +LDMCAAPG K T I L + G + A D +K R +E
Sbjct: 290 MLQSASSLIPVLELNVNPEDTILDMCAAPGGKCTFICALQKNRGHVYANDVNKMRCKAIE 349
Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNA 187
+L + ++ +D+ +I ++ Q FD+I+LDAPCSG G + N
Sbjct: 350 ANASRLGIQNLIITSFDALKIG-------KKWTFQ---FDKIILDAPCSGTG--VVNKNK 397
Query: 188 NSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
+ K+I+ A Q+KLL I L+K GI+VY TCS++VEENE V
Sbjct: 398 GARRKTLKEIRELAQKQRKLLS-----------NAISLVKNGGIVVYSTCSITVEENEQV 446
Query: 248 IAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFIC 307
I +IL + +V ++ T Q+G G+ H + V +C
Sbjct: 447 INYILKKR-DVNVLPTDIQIGDPGITHYRKKEFSSKVA--------------------LC 485
Query: 308 KLRKKYGEAPEIYIHPHLNDCIVIGPLLKLSQSV 341
+ IY+H H D + L K S +V
Sbjct: 486 R---------RIYLHKHNQDNFFVAKLWKRSDAV 510
>gi|380813114|gb|AFE78431.1| putative ribosomal RNA methyltransferase NOP2 [Macaca mulatta]
gi|383418655|gb|AFH32541.1| putative ribosomal RNA methyltransferase NOP2 [Macaca mulatta]
gi|384947276|gb|AFI37243.1| putative ribosomal RNA methyltransferase NOP2 [Macaca mulatta]
Length = 807
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 135/294 (45%), Gaps = 52/294 (17%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+ V DSS+ I P LAGHY L Q
Sbjct: 320 AQALINRGVNLDPLGKWSKTGLVVYDSSVPIGAT-PEYLAGHYMLQGASSMLPVMALAPQ 378
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDMC APG K +++A LM +TG ++A D + R+ + + +L +++ YD
Sbjct: 379 EHERILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTVISHYD 438
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANI 203
+ FDR+LLDAPCSG G + + N D+K I A++
Sbjct: 439 GRQFPKVVG-----------GFDRVLLDAPCSGTGV--ISKDPAVKTNKDEKDILRCAHL 485
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
QK+LL + V+ G G LVYCTCS+ VEENE V+ + L + V LV T
Sbjct: 486 QKELLLSAIDSVNATSKTG-------GYLVYCTCSIMVEENEWVVDYALKKR-NVRLVPT 537
Query: 264 LPQLGMKGLAHKDLEAEDQAVMQRFGPPL------IPTDRNTDTIGFFICKLRK 311
G +G + +RF P L P N D GFFI K +K
Sbjct: 538 GLDFGQEGFT--------RFRERRFHPSLRSARRFYPHTHNMD--GFFIAKFKK 581
>gi|390630530|ref|ZP_10258511.1| RNA methyltransferase [Weissella confusa LBAE C39-2]
gi|390484266|emb|CCF30859.1| RNA methyltransferase [Weissella confusa LBAE C39-2]
Length = 458
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 82/258 (31%), Positives = 119/258 (46%), Gaps = 44/258 (17%)
Query: 61 ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMN--DTGTLIALDK 118
A + LQ+ ++L LD+QP +VLD AAPG K T IA +N + G + ALD
Sbjct: 237 AFKDGLVTLQDESAMLMAPSLDIQPDDQVLDAAAAPGGKTTQIATYLNAAEGGHVEALDI 296
Query: 119 SKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSG 177
+V + + ++L ++ I D+ +++ + FDRIL+DAPCSG
Sbjct: 297 HDHKVGLINQNAERLHVADRINARTLDARKVDEA---------FADGQFDRILVDAPCSG 347
Query: 178 FGQRPMFYNANSFLNLDKKIKSYANIQK---KLLQAVYRFVSLFDWQGIPLLKKDGILVY 234
FG + DK I+ ++QK +L+A P LK G +VY
Sbjct: 348 FG----LLRRKPEIRYDKSIEDSLSLQKIQLGILEA-----------AAPKLKAGGRMVY 392
Query: 235 CTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIP 294
TC++ ENE V+ L HP+ ELV T DL+A D M + P
Sbjct: 393 GTCTILRSENEDVVDMFLADHPDFELVPTYTAY--------DLDARDDRGMVH----MFP 440
Query: 295 TDRNTDTIGFFICKLRKK 312
D +D GFFI L+KK
Sbjct: 441 DDFESD--GFFIATLQKK 456
>gi|57167662|ref|ZP_00366802.1| Sun/nucleolar protein family protein VC1502 [Campylobacter coli
RM2228]
gi|305433169|ref|ZP_07402325.1| NOL1/NOP2/sun family protein [Campylobacter coli JV20]
gi|419538997|ref|ZP_14078344.1| NOL1/NOP2/sun family protein [Campylobacter coli 90-3]
gi|419541763|ref|ZP_14080901.1| NOL1/NOP2/sun family protein [Campylobacter coli 2548]
gi|419551184|ref|ZP_14089648.1| NOL1/NOP2/sun family protein [Campylobacter coli 2688]
gi|419551959|ref|ZP_14090282.1| NOL1/NOP2/sun family protein [Campylobacter coli 2692]
gi|419555019|ref|ZP_14093132.1| NOL1/NOP2/sun family protein [Campylobacter coli 2698]
gi|419556430|ref|ZP_14094415.1| NOL1/NOP2/sun family protein [Campylobacter coli 84-2]
gi|419559847|ref|ZP_14097500.1| NOL1/NOP2/sun family protein [Campylobacter coli 86119]
gi|419561685|ref|ZP_14099218.1| NOL1/NOP2/sun family protein [Campylobacter coli 1091]
gi|419566288|ref|ZP_14103549.1| NOL1/NOP2/sun family protein [Campylobacter coli 1148]
gi|419573010|ref|ZP_14109822.1| NOL1/NOP2/sun family protein [Campylobacter coli 1891]
gi|419592673|ref|ZP_14127918.1| NOL1/NOP2/sun family protein [Campylobacter coli LMG 9854]
gi|419600502|ref|ZP_14135258.1| NOL1/NOP2/sun family protein [Campylobacter coli LMG 23344]
gi|419604901|ref|ZP_14139356.1| NOL1/NOP2/sun family protein [Campylobacter coli LMG 9853]
gi|419608134|ref|ZP_14142331.1| NOL1/NOP2/sun family protein [Campylobacter coli H6]
gi|57020784|gb|EAL57448.1| Sun/nucleolar protein family protein VC1502 [Campylobacter coli
RM2228]
gi|304443870|gb|EFM36527.1| NOL1/NOP2/sun family protein [Campylobacter coli JV20]
gi|380516230|gb|EIA42367.1| NOL1/NOP2/sun family protein [Campylobacter coli 90-3]
gi|380524406|gb|EIA50018.1| NOL1/NOP2/sun family protein [Campylobacter coli 2548]
gi|380528927|gb|EIA54134.1| NOL1/NOP2/sun family protein [Campylobacter coli 2688]
gi|380530957|gb|EIA56000.1| NOL1/NOP2/sun family protein [Campylobacter coli 2698]
gi|380532786|gb|EIA57753.1| NOL1/NOP2/sun family protein [Campylobacter coli 2692]
gi|380534704|gb|EIA59465.1| NOL1/NOP2/sun family protein [Campylobacter coli 84-2]
gi|380537924|gb|EIA62456.1| NOL1/NOP2/sun family protein [Campylobacter coli 86119]
gi|380543110|gb|EIA67330.1| NOL1/NOP2/sun family protein [Campylobacter coli 1091]
gi|380546813|gb|EIA70750.1| NOL1/NOP2/sun family protein [Campylobacter coli 1148]
gi|380552550|gb|EIA76107.1| NOL1/NOP2/sun family protein [Campylobacter coli 1891]
gi|380571933|gb|EIA94284.1| NOL1/NOP2/sun family protein [Campylobacter coli LMG 9854]
gi|380579027|gb|EIB00836.1| NOL1/NOP2/sun family protein [Campylobacter coli LMG 9853]
gi|380582905|gb|EIB04500.1| NOL1/NOP2/sun family protein [Campylobacter coli LMG 23344]
gi|380585911|gb|EIB07236.1| NOL1/NOP2/sun family protein [Campylobacter coli H6]
Length = 291
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 132/284 (46%), Gaps = 44/284 (15%)
Query: 28 QRPSLSIYCYALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQ 87
+ L+ YCY LF+ I + + A + +QN S L LDV+ GQ
Sbjct: 51 EYKKLNEYCY----LFKACDKSILSSMQ-----AFNEFKFYIQNYASYLCALNLDVKAGQ 101
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
VLDMCAAPG K ++A M + G L + SK R L++ +K ++ V+
Sbjct: 102 SVLDMCAAPGGKSINLANFMQNEGYLACNEASKDRFFTLQKNLKNY---GVKARVFMKDG 158
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKL 207
N + ++ FD+ILLDAPCS + + +S K+IK+ A +QKKL
Sbjct: 159 KNIGNLCPLK--------FDKILLDAPCSTLAKMGLELEKSS-----KEIKNIAKLQKKL 205
Query: 208 LQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQL 267
L + + LK G LVY TC+ + EENE VI L ++EL+ +
Sbjct: 206 LHS-----------ALKALKVGGELVYSTCTFTKEENEEVIENALKSDFDIELLDINLE- 253
Query: 268 GMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
LA +E +A+ + ++P + + GFFI KLRK
Sbjct: 254 --NALAKNGQSSEFEAISK--CKRILPCE---EYDGFFITKLRK 290
>gi|317059336|ref|ZP_07923821.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 3_1_5R]
gi|313685012|gb|EFS21847.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 3_1_5R]
Length = 440
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 103/199 (51%), Gaps = 31/199 (15%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
I+Q+ S LA L +PG+ VLD C+APG K + +A M + G +++LD ++ ++
Sbjct: 223 IVQDAASYLAAKNLGAKPGEIVLDTCSAPGGKTSVLAEAMKNEGQILSLDIHTHKIKLIQ 282
Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPM- 183
E KKL ++ +Q + ++D + LQ + FDRIL+DAPCSG+G ++P
Sbjct: 283 ENCKKLGITIVQ-----------AVKLDARHLSLQGKKFDRILVDAPCSGYGVLAKKPEG 331
Query: 184 FYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEE 243
YN ++ IK +Q+++L A +LK G +VY TC++ E
Sbjct: 332 LYNKK-----EENIKELVTLQREILMA-----------AAEVLKVGGEMVYSTCTILPAE 375
Query: 244 NEAVIAWILHRHPEVELVQ 262
N+ W L HP E +Q
Sbjct: 376 NQENAKWFLETHPNFESIQ 394
>gi|357048821|ref|ZP_09110055.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
saccharolyticus 30_1]
gi|355384774|gb|EHG31832.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
saccharolyticus 30_1]
Length = 452
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 122/253 (48%), Gaps = 50/253 (19%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDT--GTLIALDKSKPRVTKL 126
+Q+ S+L L + P +VLD CAAPG K THIA ++ G + ALD +V +
Sbjct: 241 IQDESSMLVAPALHIAPEHQVLDACAAPGGKTTHIASFLSAEAGGKVTALDIHPHKVKLI 300
Query: 127 EETIKKLQLSSI-QTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP 182
E ++L +S + Q V D+ + +++ FDRIL+DAPCSG G ++P
Sbjct: 301 TENAERLAVSEVVQAEVMDAREVA---------QHFEEQQFDRILVDAPCSGLGLMRRKP 351
Query: 183 -MFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSV 241
+ YN + ++ IQ +L++ P LK GI++Y TC++ +
Sbjct: 352 DIKYNKQA-----ADLERLPEIQLAILES-----------AAPTLKNSGIMIYSTCTIML 395
Query: 242 EENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEA--EDQAVMQRFGPPLIPTDRNT 299
EEN+AV+ L HPE E + + D+ A DQ + + P D T
Sbjct: 396 EENQAVVEAFLADHPEFERIDV--------SVNADIAANINDQMLT------IYPQDFMT 441
Query: 300 DTIGFFICKLRKK 312
D GFFI LRKK
Sbjct: 442 D--GFFISCLRKK 452
>gi|419698436|ref|ZP_14226147.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
LMG 23211]
gi|380674872|gb|EIB89791.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
LMG 23211]
Length = 292
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 136/280 (48%), Gaps = 44/280 (15%)
Query: 32 LSIYCYALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLD 91
++ YCY D + + LS + A + + +QN S L L+V+ GQ VLD
Sbjct: 55 INAYCYLFDAKDKAI-------LSSMK--AFNEAYFYIQNYSSYLCALNLEVKAGQSVLD 105
Query: 92 MCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTS 151
MCAAPG K ++A M +TG L + S+ R L++ +K +++ + + D I
Sbjct: 106 MCAAPGGKSINLANFMQNTGYLACNEMSRDRFFILQKNLKNYGVNA-KVFMKDGKNIGNL 164
Query: 152 SQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAV 211
+ FD+ILLDAPCS F + F S+ K+IK+ A QKKLL +
Sbjct: 165 CPL----------KFDKILLDAPCSTFA-KIGFDLEKSY----KEIKNIAKTQKKLLHS- 208
Query: 212 YRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKG 271
+ LK G LVY TC+ + EENE VI L ++EL+ + ++
Sbjct: 209 ----------ALKALKIGGELVYSTCTFTKEENEEVIENALKSEFKLELL----DIDLEN 254
Query: 272 LAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
+ K ++E+ A + + ++P+ D GFFI KLRK
Sbjct: 255 IEAKAGQSEEFAEISK-CRRILPS---LDYDGFFIAKLRK 290
>gi|419682267|ref|ZP_14211003.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
1213]
gi|380661712|gb|EIB77592.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
1213]
Length = 292
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 136/280 (48%), Gaps = 44/280 (15%)
Query: 32 LSIYCYALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLD 91
++ YCY D + + LS + A + + +QN S L L+V+ GQ VLD
Sbjct: 55 INAYCYLFDAKDKAI-------LSSMK--AFNEAYFYIQNYSSYLCALNLEVKAGQSVLD 105
Query: 92 MCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTS 151
MCAAPG K ++A M +TG L + S+ R L++ +K +++ + + D I
Sbjct: 106 MCAAPGGKSINLANFMQNTGYLACNEMSRDRFFILQKNLKNYGVNA-KVFMKDGKNIGNL 164
Query: 152 SQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAV 211
+ FD+ILLDAPCS F + F S+ K+IK+ A QKKLL +
Sbjct: 165 CPL----------KFDKILLDAPCSTFA-KIGFDLEKSY----KEIKNIAKTQKKLLHS- 208
Query: 212 YRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKG 271
+ LK G LVY TC+ + EENE VI L ++EL+ + ++
Sbjct: 209 ----------ALKALKIGGELVYSTCTFTKEENEEVIENALKSEFKLELL----DIDLEN 254
Query: 272 LAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
+ K ++E+ A + + ++P+ D GFFI KLRK
Sbjct: 255 IEAKAGQSEEFAEISK-CRRILPS---LDYDGFFIAKLRK 290
>gi|375091698|ref|ZP_09737986.1| ribosomal RNA small subunit methyltransferase B [Helcococcus kunzii
ATCC 51366]
gi|374562585|gb|EHR33912.1| ribosomal RNA small subunit methyltransferase B [Helcococcus kunzii
ATCC 51366]
Length = 422
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 126/250 (50%), Gaps = 58/250 (23%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ SIL L+ + VLD+CAAPG+K TH+ +MN+ G ++A D +K ++ K+++
Sbjct: 225 IQDQSSILVSEILNPKENSSVLDLCAAPGSKSTHLLQIMNNNGKVVANDIAKDKLDKIKD 284
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
++LQLS+ + YD+ + +K + FD +L+DAPCSG G ++P
Sbjct: 285 NFERLQLSNFELTNYDAQKT----------IKQFIDKFDYVLVDAPCSGLGVIKRKPE-- 332
Query: 186 NANSFLNLDKKIK---SYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVE 242
+ L+K I S IQ ++++ Y++ LK G LVY TC+L +
Sbjct: 333 -----IKLNKSIDDIMSLNRIQNEIIEQSYKY-----------LKVGGRLVYSTCTLGRK 376
Query: 243 ENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTI 302
EN ++ + RH +V++ + + + ++P D+N D
Sbjct: 377 ENIDIVNDFISRHNDVKI---------------------EKINDKEYLEILP-DKNND-- 412
Query: 303 GFFICKLRKK 312
GFFIC ++K+
Sbjct: 413 GFFICSMQKQ 422
>gi|257871148|ref|ZP_05650801.1| sun protein [Enterococcus gallinarum EG2]
gi|257805312|gb|EEV34134.1| sun protein [Enterococcus gallinarum EG2]
Length = 458
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 122/253 (48%), Gaps = 50/253 (19%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDT--GTLIALDKSKPRVTKL 126
+Q+ S+L L + P +VLD CAAPG K THIA ++ G + ALD +V +
Sbjct: 247 IQDESSMLVAPALHIAPEHQVLDACAAPGGKTTHIASFLSAEAGGKVTALDIHPHKVKLI 306
Query: 127 EETIKKLQLSSI-QTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP 182
E ++L +S + Q V D+ + +++ FDRIL+DAPCSG G ++P
Sbjct: 307 TENAERLAVSEVVQAEVMDAREVA---------QHFEEQQFDRILVDAPCSGLGLMRRKP 357
Query: 183 -MFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSV 241
+ YN + ++ IQ +L++ P LK GI++Y TC++ +
Sbjct: 358 DIKYNKQA-----ADLERLPEIQLAILES-----------AAPTLKNSGIMIYSTCTIML 401
Query: 242 EENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEA--EDQAVMQRFGPPLIPTDRNT 299
EEN+AV+ L HPE E + + D+ A DQ + + P D T
Sbjct: 402 EENQAVVEAFLADHPEFERIDV--------SVNADIAANINDQMLT------IYPQDFMT 447
Query: 300 DTIGFFICKLRKK 312
D GFFI LRKK
Sbjct: 448 D--GFFISCLRKK 458
>gi|188585963|ref|YP_001917508.1| sun protein [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179350650|gb|ACB84920.1| sun protein [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 462
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 107/192 (55%), Gaps = 20/192 (10%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q++ S++ H D Q G ++D+C+APG+K TH+ L++ G+++A+D + R+ ++E
Sbjct: 239 VQDINSMVVSHLCDPQQGDNIIDLCSAPGSKTTHLVQLIDGQGSILAVDIHEHRLKLVKE 298
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
++LQ++++ D T++ + Q E K K FD L+DAPCSG G +RP
Sbjct: 299 ACRRLQVNNVNVKQADGTKLISRDQ--QENNKQLKGQFDLCLIDAPCSGLGTLRKRPELK 356
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
S ++ + S + +Q KLL+A G L+K G LVY TC+++ +ENE
Sbjct: 357 WTIS----EQDLNSLSTLQGKLLKA-----------GSQLVKPGGTLVYSTCTINPQENE 401
Query: 246 AVIAWILHRHPE 257
I L HP+
Sbjct: 402 DQINDFLKNHPD 413
>gi|419586722|ref|ZP_14122680.1| NOL1/NOP2/sun family protein [Campylobacter coli 67-8]
gi|380565775|gb|EIA88485.1| NOL1/NOP2/sun family protein [Campylobacter coli 67-8]
Length = 291
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 132/284 (46%), Gaps = 44/284 (15%)
Query: 28 QRPSLSIYCYALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQ 87
+ L+ YCY LF+ I + + A + +QN S L LDV+ GQ
Sbjct: 51 EYEKLNEYCY----LFKACDKSILSSMQ-----AFNEFKFYIQNYTSYLCALNLDVKAGQ 101
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
VLDMCAAPG K ++A M + G L + SK R L++ +K ++ V+
Sbjct: 102 SVLDMCAAPGGKSINLANFMQNEGYLACNEASKDRFFTLQKNLKNY---GVKARVFMKDG 158
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKL 207
N + ++ FD+ILLDAPCS + + +S K+IK+ A +QKKL
Sbjct: 159 KNIGNLCPLK--------FDKILLDAPCSTLAKMGLELEKSS-----KEIKNIAKLQKKL 205
Query: 208 LQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQL 267
L + + LK G LVY TC+ + EENE VI L ++EL+ +
Sbjct: 206 LHS-----------ALKALKVGGELVYSTCTFTKEENEEVIENALKSDFDIELLDINLE- 253
Query: 268 GMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
LA +E +A+ + ++P + + GFFI KLRK
Sbjct: 254 --NALAKNGQSSEFEAISK--CKRILPCE---EYDGFFITKLRK 290
>gi|433449238|ref|ZP_20412102.1| rRNA methylase [Weissella ceti NC36]
gi|429538752|gb|ELA06790.1| rRNA methylase [Weissella ceti NC36]
Length = 452
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 105/209 (50%), Gaps = 24/209 (11%)
Query: 55 SQVPNVALDSSMGIL--QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGT 112
QV ++D + G++ Q + L +PGQ+VLD+ AAPG K TH+A M G
Sbjct: 64 GQVNGHSVDHTTGVIYSQEPSAQLVAELAAPKPGQRVLDLAAAPGGKSTHLAAFMQQEGL 123
Query: 113 LIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLD 172
LI+ + S+ R L E +++ + + +D+T + K E FD I+LD
Sbjct: 124 LISNEISRKRAGILSENMERFGVQNALVTNHDATTL----------AKHFPEYFDTIVLD 173
Query: 173 APCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGIL 232
APCSG G ++A + D ++ A+ QK +L I +LK G L
Sbjct: 174 APCSGEGMFRKDHDAVDYWTADYPQEN-ADRQKDILTDT-----------ITMLKPGGTL 221
Query: 233 VYCTCSLSVEENEAVIAWILHRHPEVELV 261
VY TC+ + EE+E VIAW+L +PE +V
Sbjct: 222 VYSTCTFAPEEDEQVIAWLLAEYPEFSVV 250
>gi|347525369|ref|YP_004832117.1| 23S rRNA m(5)C methyltransferase [Lactobacillus ruminis ATCC 27782]
gi|345284328|gb|AEN78181.1| 23S rRNA m(5)C methyltransferase [Lactobacillus ruminis ATCC 27782]
Length = 458
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 115/218 (52%), Gaps = 24/218 (11%)
Query: 54 LSQVPNVALDSSMGIL--QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTG 111
+ V +L+ G + Q+L ++ G +PG+K+LD+CAAPG K +H+A LMN+ G
Sbjct: 62 VGSVSGNSLEHQTGYVYSQDLSAMYVGEVCGPRPGEKILDLCAAPGGKSSHLASLMNNEG 121
Query: 112 TLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILL 171
L++ + ++ R L E ++++ ++ D + +K ++ FD+I++
Sbjct: 122 LLVSNEINRKRALVLAENMERIGARNVIVTNEDPAGL----------LKTFEQFFDKIVV 171
Query: 172 DAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGI 231
DAPCSG G + A + + D + A ++KL+ A + +LK+ G
Sbjct: 172 DAPCSGEGMFRKDHAATKYWHKDYPNECAA--RQKLILA----------DAMKMLKQGGT 219
Query: 232 LVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGM 269
LVY TC+ + EE+E +I W+L+ +P +ELV GM
Sbjct: 220 LVYSTCTFAPEEDEQIITWLLNEYPYLELVPIKKYSGM 257
>gi|315917987|ref|ZP_07914227.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium gonidiaformans
ATCC 25563]
gi|313691862|gb|EFS28697.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium gonidiaformans
ATCC 25563]
Length = 440
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 103/199 (51%), Gaps = 31/199 (15%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
I+Q+ S LA L +PG+ VLD C+APG K + +A M + G +++LD ++ ++
Sbjct: 223 IVQDAASYLAAKNLGAKPGEIVLDTCSAPGGKTSVLAEAMKNEGQILSLDIHTHKIKLIQ 282
Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPM- 183
E KKL ++ +Q + ++D + LQ + FDRIL+DAPCSG+G ++P
Sbjct: 283 ENCKKLGITIVQ-----------AVKLDARHLSLQGKKFDRILVDAPCSGYGVLAKKPEG 331
Query: 184 FYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEE 243
YN ++ IK +Q+++L A +LK G +VY TC++ E
Sbjct: 332 LYNKK-----EENIKELVTLQREILMA-----------AAEVLKVGGEMVYSTCTILPAE 375
Query: 244 NEAVIAWILHRHPEVELVQ 262
N+ W L HP E +Q
Sbjct: 376 NQENAKWFLETHPNFESIQ 394
>gi|410727115|ref|ZP_11365338.1| ribosomal RNA small subunit methyltransferase RsmB [Clostridium sp.
Maddingley MBC34-26]
gi|410599450|gb|EKQ54003.1| ribosomal RNA small subunit methyltransferase RsmB [Clostridium sp.
Maddingley MBC34-26]
Length = 438
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 129/247 (52%), Gaps = 42/247 (17%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ +++ L+++ G VLD+C+APG K THIA ++ +TG ++A D + ++ ++E
Sbjct: 231 VQDESAMIIAPLLELEEGMTVLDLCSAPGGKTTHIAEILQNTGKVLAYDLHESKLGLIKE 290
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
++L +++++ + D+TR+N + DRIL+D PCSG G ++P
Sbjct: 291 NCERLGITNVEVNTNDATRLNPDLI----------AASDRILIDVPCSGLGIIRKKPEIK 340
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ +L + IK IQ+ ++++ + + LK DG+++Y TC+L+ EENE
Sbjct: 341 WNKTRNDLREIIK----IQRDIMESAWMY-----------LKADGVMIYSTCTLNKEENE 385
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
I W ++RH + + + + +D V R G I + N D GFF
Sbjct: 386 ENIEWFVNRHKDCSVKKIF------------IGKQDNLVYNRDGSLTILPNENMD--GFF 431
Query: 306 ICKLRKK 312
+ KL KK
Sbjct: 432 VAKLEKK 438
>gi|419627976|ref|ZP_14160862.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
LMG 23263]
gi|419629504|ref|ZP_14162228.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
60004]
gi|419639010|ref|ZP_14171051.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
86605]
gi|380605933|gb|EIB25876.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
LMG 23263]
gi|380607936|gb|EIB27777.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
60004]
gi|380617506|gb|EIB36676.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
86605]
Length = 292
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 137/280 (48%), Gaps = 44/280 (15%)
Query: 32 LSIYCYALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLD 91
++ YCY D + + LS + A + + +QN S L L+V+ GQ+VLD
Sbjct: 55 INAYCYLFDAKDKAI-------LSSMK--AFNEAHFYIQNYSSYLCALNLEVKAGQRVLD 105
Query: 92 MCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTS 151
MCAAPG K ++A M +TG L + S+ R L++ +K +++ + + D I
Sbjct: 106 MCAAPGGKSINLANFMQNTGYLACNEISRDRFFILQKNLKNYGVNA-KVFMKDGKNIGNL 164
Query: 152 SQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAV 211
+ FD+ILLDAPCS F + F S+ K+IK+ A QKKLL +
Sbjct: 165 CPL----------KFDKILLDAPCSTFA-KIGFDLEKSY----KEIKNIAKTQKKLLHS- 208
Query: 212 YRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKG 271
+ LK G LVY TC+ + EENE VI L ++EL+ + ++
Sbjct: 209 ----------ALKALKIGGELVYSTCTFTKEENEEVIENALKSEFKLELL----DIDLEN 254
Query: 272 LAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
+ K ++E+ A + + ++P+ D GFFI KLRK
Sbjct: 255 VEAKAGQSEEFAEISK-CRRILPS---LDYDGFFIAKLRK 290
>gi|345791651|ref|XP_854432.2| PREDICTED: putative ribosomal RNA methyltransferase NOP2 [Canis
lupus familiaris]
Length = 814
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 95/294 (32%), Positives = 136/294 (46%), Gaps = 52/294 (17%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+ V DSS+ I P LAG+Y L Q
Sbjct: 325 AQALINRGVNLDPLGKWSKTGLVVYDSSVPIGAT-PEYLAGYYMLQGASSMLPVMALAPQ 383
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDMC APG K ++IA LM +TG ++A D + R+ + + +L +++ YD
Sbjct: 384 EHERILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYD 443
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANI 203
+ FDR+LLDAPCSG G + + N D+K I A++
Sbjct: 444 GRQFPKVVG-----------GFDRVLLDAPCSGTGV--ISKDPAVKTNKDEKDILRCAHL 490
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
QK+LL + V+ G G LVYCTCS+ VEENE V+ + L + V LV T
Sbjct: 491 QKELLLSAIDSVNATSKTG-------GYLVYCTCSIMVEENEWVVDYALKKR-NVRLVPT 542
Query: 264 LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
G +G + +RF P L T R N D GFFI K +K
Sbjct: 543 GLDFGQEGFT--------RFRERRFHPTLRSTRRFYPHTHNMD--GFFIAKFKK 586
>gi|256273278|gb|EEU08219.1| Nop2p [Saccharomyces cerevisiae JAY291]
Length = 618
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 132/296 (44%), Gaps = 55/296 (18%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ ++V DS + I P LAGHY LD
Sbjct: 286 AQTLVNRGVNLQPIGSWTKVGLQIFDSQVPIGAT-PEYLAGHYILQAASSFLPVIALDPH 344
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDM AAPG K T+I+ +M +TG + A D +K R L I +L ++ YD
Sbjct: 345 ENERILDMAAAPGGKTTYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNTIVCNYD 404
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANI- 203
+ FDRILLDAPCSG G + + + + K + I
Sbjct: 405 AREFPKVIG-----------GFDRILLDAPCSGTG----VIGKDQSVKVSRTEKDFIQIP 449
Query: 204 --QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
QK+LL + V G G++VY TCS++VEE+EAVI + L + P V+LV
Sbjct: 450 HLQKQLLLSAIDSVDCNSKHG-------GVIVYSTCSVAVEEDEAVIDYALRKRPNVKLV 502
Query: 262 QTLPQLGMKGLAHKDLEAEDQAVMQRFGPPL------IPTDRNTDTIGFFICKLRK 311
T +G EA ++F P + P N D GFF+ K +K
Sbjct: 503 DTGLAIGK--------EAFTSYRGKKFHPSVKLARRYYPHTYNVD--GFFVAKFQK 548
>gi|156085270|ref|XP_001610117.1| nucleolar protein-like protein with NOL1/NOP2/sun family RNA
methylase domain [Babesia bovis T2Bo]
gi|154797369|gb|EDO06549.1| nucleolar protein-like protein with NOL1/NOP2/sun family putative
RNA methylase domain [Babesia bovis]
Length = 515
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 99/311 (31%), Positives = 143/311 (45%), Gaps = 52/311 (16%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RG V+ S+ + + SS + P LAGHY L +
Sbjct: 154 AAALIARGANVDPVGDWSK-EGLVVHSSQVPIGATPEYLAGHYMMQSAASLIPVLALSPK 212
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
G+KVLD+ AAPG K THIA +MN+ G L A D +K R T L I +L +++ YD
Sbjct: 213 DGEKVLDIAAAPGGKTTHIAQMMNNGGILYANDFNKERCTALVANIHRLGITNTIVTNYD 272
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYA 201
+D++ + DR+L DAPCSG G + P + ++L K A
Sbjct: 273 G--------LDLKGI---LPPLDRVLCDAPCSGLGVISKDPSVKVKRTLMDL----KQNA 317
Query: 202 NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
++QK+LL +S+ +KK +VY TCS+SVEENE VI + L R +V+LV
Sbjct: 318 DLQKRLLLCCIDMLSVN-------VKKGNCVVYSTCSISVEENEQVIDYAL-RMRDVKLV 369
Query: 262 QTLPQLGMKGLAH---KDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKKYGEAPE 318
+ G L+ + +RF P L D GFF+ KL K + P
Sbjct: 370 PLGVEAGSPALSSFRGRHFHPSIGQHARRFYPHLHNLD------GFFVAKLVKLSSKIPT 423
Query: 319 I---YIHPHLN 326
+ Y P N
Sbjct: 424 LTKRYREPRRN 434
>gi|419659594|ref|ZP_14190119.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
2008-979]
gi|419679147|ref|ZP_14208165.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
87459]
gi|419695083|ref|ZP_14222983.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
LMG 23210]
gi|380639121|gb|EIB56631.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
2008-979]
gi|380658196|gb|EIB74227.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
87459]
gi|380679870|gb|EIB94708.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
LMG 23210]
Length = 292
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 137/280 (48%), Gaps = 44/280 (15%)
Query: 32 LSIYCYALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLD 91
++ YCY D + + LS + A + + +QN S L L+V+ GQ+VLD
Sbjct: 55 INAYCYLFDAKDKAI-------LSSMK--AFNEAHFYIQNYSSYLCALNLEVKAGQRVLD 105
Query: 92 MCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTS 151
MCAAPG K ++A M +TG L + S+ R L++ +K +++ + + D I
Sbjct: 106 MCAAPGGKSINLANFMQNTGYLACNEMSRDRFFILQKNLKNYGVNA-KVFMKDGKNIGNL 164
Query: 152 SQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAV 211
+ FD+ILLDAPCS F + F S+ K+IK+ A QKKLL +
Sbjct: 165 CPL----------KFDKILLDAPCSTFA-KIGFDLEKSY----KEIKNIAKTQKKLLHS- 208
Query: 212 YRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKG 271
+ LK G LVY TC+ + EENE VI L ++EL+ + ++
Sbjct: 209 ----------ALKALKIGGELVYSTCTFTKEENEEVIENALKSEFKLELL----DIDLEN 254
Query: 272 LAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
+ K ++E+ A + + ++P+ D GFFI KLRK
Sbjct: 255 VEAKVGQSEEFAEISK-CRRILPS---LDYDGFFIAKLRK 290
>gi|419595024|ref|ZP_14130140.1| NOL1/NOP2/sun family protein [Campylobacter coli LMG 23336]
gi|380574635|gb|EIA96733.1| NOL1/NOP2/sun family protein [Campylobacter coli LMG 23336]
Length = 291
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 132/284 (46%), Gaps = 44/284 (15%)
Query: 28 QRPSLSIYCYALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQ 87
+ L+ YCY LF+ I + + A + +QN S L LDV+ GQ
Sbjct: 51 EYKKLNEYCY----LFKACDKSILSSMQ-----AFNEFKFYIQNYASYLCALNLDVKAGQ 101
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
VLDMCAAPG K ++A M + G L + SK R L++ +K ++ V+
Sbjct: 102 SVLDMCAAPGGKSINLANFMQNEGYLACNEASKDRFFTLQKNLKNY---GVKARVFMKDG 158
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKL 207
N + ++ FD+ILLDAPCS + + +S K+IK+ A +QKKL
Sbjct: 159 KNIGNLCPLK--------FDKILLDAPCSTLAKMGLELEKSS-----KEIKNIAKLQKKL 205
Query: 208 LQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQL 267
L + + LK G LVY TC+ + EENE VI L ++EL+ +
Sbjct: 206 LHS-----------ALKALKVGGELVYSTCTFTKEENEEVIENALKSDFDIELLDINLE- 253
Query: 268 GMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
LA +E +A+ + ++P + + GFFI KLRK
Sbjct: 254 --NALAKNGQSSEFEAISK--CKRILPCE---EYDGFFITKLRK 290
>gi|386001458|ref|YP_005919757.1| NOL1/NOP2/sun family putative RNA methylase [Methanosaeta
harundinacea 6Ac]
gi|357209514|gb|AET64134.1| NOL1/NOP2/sun family putative RNA methylase [Methanosaeta
harundinacea 6Ac]
Length = 358
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 77/263 (29%), Positives = 121/263 (46%), Gaps = 37/263 (14%)
Query: 56 QVPNVALDSSMGIL--QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTL 113
+ P L+S MG + Q S+ + L +PG++VLD+CAAPG+K T IA++M + G L
Sbjct: 127 EKPGNLLESLMGQIHIQEEISMASPVVLSPEPGERVLDLCAAPGSKTTQIAMMMENRGLL 186
Query: 114 IALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDA 173
+A D + RV L ++ ++ YD R FDR+L+DA
Sbjct: 187 VANDPANTRVASLRSNCERAGAVNVAVTRYDGRR-------------FPDRGFDRVLVDA 233
Query: 174 PCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILV 233
PC+G G +L + + +Q+ LL+ + + + + G +V
Sbjct: 234 PCTGQGMARKDITVLGRWSLKRSL-GIQRLQRALLR-----------RALQVTRSGGTVV 281
Query: 234 YCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLI 293
Y TC+ + EENE V++W L + V L + ++GLA AE RFG +
Sbjct: 282 YSTCTFAPEENEGVVSWALGQVSGVRLQEA----SVRGLAGSPGLAE--WAGSRFGDEME 335
Query: 294 PTDR----NTDTIGFFICKLRKK 312
R D GFF+ KL K+
Sbjct: 336 LCTRYYPHQNDAGGFFVAKLIKE 358
>gi|448298241|ref|ZP_21488271.1| RNA methylase [Natronorubrum tibetense GA33]
gi|445591782|gb|ELY45979.1| RNA methylase [Natronorubrum tibetense GA33]
Length = 303
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 117/238 (49%), Gaps = 42/238 (17%)
Query: 81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQT 140
LD QPG++V D CAAPG K T IA LM+D GT++A D + R++ L ++L +S+
Sbjct: 94 LDPQPGERVWDCCAAPGGKATQIAALMDDRGTVVANDNNLGRISALRFNAERLGATSLAV 153
Query: 141 HVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDK-KIKS 199
V D+ + ++R + FDR L+DAPCS G + N ++ N + I S
Sbjct: 154 TVDDARNYS------LKRFPFDE--FDRTLVDAPCSCEGT--IRKNPDALDNWSEGHISS 203
Query: 200 YANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHP--- 256
A IQK +L+ + I ++ G +VY TC+ + EENEAV+ L
Sbjct: 204 IAGIQKGILR-----------RAIQATREGGTVVYSTCTFAPEENEAVVQHALEAESCRV 252
Query: 257 ---EVELVQTLPQLGMKGLAHKDLEAEDQAVMQ--RFGPPLIPTDRNTDTIGFFICKL 309
E+EL + GL + E D+++ Q R P DT GFF+ KL
Sbjct: 253 VDFEIELEHS------PGLTEWEGETFDESLKQAIRIYP------HQNDTGGFFVAKL 298
>gi|297530072|ref|YP_003671347.1| RNA methylase, NOL1/NOP2/sun family [Geobacillus sp. C56-T3]
gi|297253324|gb|ADI26770.1| RNA methylase, NOL1/NOP2/sun family [Geobacillus sp. C56-T3]
Length = 454
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 99/190 (52%), Gaps = 23/190 (12%)
Query: 73 PSILA-GHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIK 131
PS +A L PG+ VLD+CAAPG K T + +M + G L+A + RV L E ++
Sbjct: 88 PSAMAVAEALRPAPGETVLDLCAAPGGKTTQLGAMMENKGLLVANEIHPKRVKALAENVE 147
Query: 132 KLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFL 191
+ L+ ++ +N + + ER FD+IL+DAPCSG G A SF
Sbjct: 148 RFGLT-------NTVVVNETPEALAERF---PGFFDKILVDAPCSGEGMFRKDEEAASFW 197
Query: 192 NLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWI 251
+ ++ A Q+++L++ Y +LK+ GILVY TC+ S EENE I W+
Sbjct: 198 S-PAYVEECAARQRRILESAY-----------AMLKEGGILVYSTCTFSPEENEQTIEWL 245
Query: 252 LHRHPEVELV 261
L H ++ L+
Sbjct: 246 LEAHDDLRLL 255
>gi|392529123|ref|ZP_10276260.1| ribosomal RNA small subunit methyltransferase B [Carnobacterium
maltaromaticum ATCC 35586]
gi|414083579|ref|YP_006992287.1| ribosomal RNA small subunit methyltransferase B [Carnobacterium
maltaromaticum LMA28]
gi|412997163|emb|CCO10972.1| ribosomal RNA small subunit methyltransferase B [Carnobacterium
maltaromaticum LMA28]
Length = 462
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 116/246 (47%), Gaps = 38/246 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDT--GTLIALDKSKPRVTKL 126
+Q+ S+L L ++P +VLD CAAPG K THIA ++ G ++ALD K +V +
Sbjct: 250 IQDETSMLVAPALQIEPHHQVLDACAAPGGKTTHIASFLSHEAGGKVVALDLHKHKVKLV 309
Query: 127 EETIKKLQLSSI-QTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFY 185
+E +L + + + V D+ +++ ESFDRIL+DAPCSG G
Sbjct: 310 KENAARLHVDDVVEGVVLDARKVDEV---------FPDESFDRILVDAPCSGLG----LM 356
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ KK + N+QK L+ + P LKK GI+VY TC+++ EENE
Sbjct: 357 RRKPDIKYTKKERDLLNLQKIQLEILESVA--------PKLKKYGIMVYSTCTITEEENE 408
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
+ L HPE E L + Q ++ + P D TD GFF
Sbjct: 409 KTVEQFLALHPEFEKTTVLVGETL------------QPCLKNGFIQIYPHDFETD--GFF 454
Query: 306 ICKLRK 311
I L+K
Sbjct: 455 ISCLKK 460
>gi|374708693|ref|ZP_09713127.1| 16S rRNA methyltransferase B [Sporolactobacillus inulinus CASD]
Length = 451
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 77/263 (29%), Positives = 119/263 (45%), Gaps = 43/263 (16%)
Query: 57 VPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIAL 116
V A +Q+ S+L + + +LD CA PG K TH+ MN+ G +IAL
Sbjct: 223 VATAAFQKGWFTVQDESSMLVADCVGAEDNMLILDACAGPGGKTTHLGERMNNKGKIIAL 282
Query: 117 DKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCS 176
D + +++ +L L +I+T D+ R + +FDR+LLD PCS
Sbjct: 283 DLHPHKTKLIDQAANRLGLENIETRAMDAR---------AARDTFGEAAFDRVLLDVPCS 333
Query: 177 GFG---QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILV 233
G G ++P + + ++I IQ+ +L+ + P++K G L+
Sbjct: 334 GLGVIRRKPEIKWSKTA----EEISGLIPIQRAILE-----------EAAPMVKPGGRLI 378
Query: 234 YCTCSLSVEENEAVIAWILHRHPE----VELVQTLPQLGMKGLAHKDLEAEDQAVMQRFG 289
Y TC++ EENE I L RHPE L + LP + D E+ ++Q F
Sbjct: 379 YSTCTIQKEENEQQILAFLRRHPEYRTDAALFERLP-----SVLSDDRESLKPGMIQIF- 432
Query: 290 PPLIPTDRNTDTIGFFICKLRKK 312
P +TD GFFIC L +K
Sbjct: 433 ----PYQFDTD--GFFICCLERK 449
>gi|20094975|ref|NP_614822.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
gi|19888229|gb|AAM02752.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
Length = 450
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 109/211 (51%), Gaps = 24/211 (11%)
Query: 63 DSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPR 122
+ + ++Q+ + LA L+ +PG+ V+D+CAAPG K TH+A LM G ++A+D + R
Sbjct: 236 EEGLFVIQDEAAALASAVLNPKPGEVVVDLCAAPGGKTTHMAQLMGGEGKIVAIDVDEVR 295
Query: 123 VTKLEETIKKLQ-LSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQR 181
+ +L E +++ L I+TH+ D KL +E D +L+D PCS G
Sbjct: 296 MERLREIAERMGVLDCIETHLMDGREAPE---------KLGREFADAVLVDPPCSADGTI 346
Query: 182 PMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSV 241
P + D +++ Q +LL+A G ++K G L+Y TCS+
Sbjct: 347 PKNPERRWRITPD-ELERLPKFQYELLKA-----------GAEMVKPGGRLLYSTCSMFP 394
Query: 242 EENEAVIAWILHRHPEVELVQTLPQLGMKGL 272
EE+E V+ L HPE EL++ ++G +G
Sbjct: 395 EEDEEVVRRFLDEHPEFELLEV--KVGDQGF 423
>gi|386722464|ref|YP_006188790.1| hypothetical protein B2K_09865 [Paenibacillus mucilaginosus K02]
gi|384089589|gb|AFH61025.1| hypothetical protein B2K_09865 [Paenibacillus mucilaginosus K02]
Length = 391
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 95/186 (51%), Gaps = 32/186 (17%)
Query: 81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQT 140
LDVQPG +VLD+CAAPG K T +A + TG + A D RV L +K L+L+ ++
Sbjct: 87 LDVQPGHRVLDLCAAPGGKTTQLAGKLQGTGLVAANDIHSERVKAL---VKNLELNGVRE 143
Query: 141 HVYDSTRINTSSQIDIERMKLQ---KESFDRILLDAPCSGFGQRPMFYNANSFLNL--DK 195
+ ++ + KLQ + FDRIL+DAPCSG G MF +
Sbjct: 144 AIV----------LNEDPAKLQEAFRGYFDRILIDAPCSGEG---MFRKEEEMAKAWQED 190
Query: 196 KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRH 255
+ YA +Q+ LL+ Q +LK G LVY TC+ S EENE +IA L H
Sbjct: 191 WTEKYAAMQRVLLR-----------QAAVMLKPGGRLVYSTCTFSPEENEQIIAGFLDEH 239
Query: 256 PEVELV 261
P+ E+
Sbjct: 240 PDFEIA 245
>gi|448602998|ref|ZP_21656819.1| tRNA and rRNA cytosine-C5-methylase [Haloferax sulfurifontis ATCC
BAA-897]
gi|445746194|gb|ELZ97656.1| tRNA and rRNA cytosine-C5-methylase [Haloferax sulfurifontis ATCC
BAA-897]
Length = 313
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 125/248 (50%), Gaps = 35/248 (14%)
Query: 74 SILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKL 133
S L LD QPG++V D CAAPG+K T IA +M+D G LI D + R++ L ++L
Sbjct: 87 SALPAIALDPQPGERVWDTCAAPGSKTTQIAAMMDDEGVLIGNDNNLGRLSALRHNAERL 146
Query: 134 QLSSIQTHVYDSTRINTSSQIDIERMKLQKES---FDRILLDAPCSGFG---QRPMFYNA 187
++++ D+ N S + ER + ES FDR+L+DAPCS G + P +
Sbjct: 147 GVTNLVVSNQDAR--NFSMKPYGERTPEKSESFEQFDRVLVDAPCSCEGTCRKNPDVLDE 204
Query: 188 NSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
+ +KS A IQK +L+ + + + K G +VY TC+ + EENEA+
Sbjct: 205 WTM----NHVKSVAGIQKGILR-----------RAVQVTKAGGNVVYSTCTFAPEENEAI 249
Query: 248 IAWILHRHPEVELVQTLPQLGMK---GLAHKDLEAEDQAVMQ--RFGPPLIPTDRNTDTI 302
+ ++L R + E+V+ G + G+ + + D +V + R P + DT
Sbjct: 250 LDFVLERE-DCEVVEWDVPDGFETAPGITEWEGDEYDPSVTKARRVYP------HHNDTG 302
Query: 303 GFFICKLR 310
GFF KL
Sbjct: 303 GFFTAKLE 310
>gi|419544036|ref|ZP_14083004.1| NOL1/NOP2/sun family protein [Campylobacter coli 2553]
gi|380525722|gb|EIA51226.1| NOL1/NOP2/sun family protein [Campylobacter coli 2553]
Length = 291
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 88/285 (30%), Positives = 129/285 (45%), Gaps = 46/285 (16%)
Query: 28 QRPSLSIYCYALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQ 87
+ L+ YCY LF+ I + + A + +QN S L LDV+ GQ
Sbjct: 51 EYKKLNEYCY----LFKACDKSILSSMQ-----AFNEFKFYIQNYASYLCALNLDVKAGQ 101
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
VLDMCAAPG K ++A M + G L + SK R L++ +K ++ V+
Sbjct: 102 SVLDMCAAPGGKSINLANFMQNEGYLACNEASKDRFFTLQKNLKNY---GVKARVFMKDG 158
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKL 207
N + ++ FD+ILLDAPCS + + +S K+IK+ A +QKKL
Sbjct: 159 KNIGNLCPLK--------FDKILLDAPCSTLAKMGLELEKSS-----KEIKNIAKLQKKL 205
Query: 208 LQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQ-TLPQ 266
L + + LK G LVY TC+ + EENE VI L ++EL+ L
Sbjct: 206 LHS-----------ALKALKVGGELVYSTCTFTKEENEEVIENALRSDFDIELLDINLEN 254
Query: 267 LGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
K + EA + ++P + + GFFI KLRK
Sbjct: 255 ALAKNGQSSEFEATSKC------KRILPCE---EYDGFFIAKLRK 290
>gi|257868127|ref|ZP_05647780.1| sun protein [Enterococcus casseliflavus EC30]
gi|257874598|ref|ZP_05654251.1| sun protein [Enterococcus casseliflavus EC10]
gi|257802241|gb|EEV31113.1| sun protein [Enterococcus casseliflavus EC30]
gi|257808762|gb|EEV37584.1| sun protein [Enterococcus casseliflavus EC10]
Length = 452
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 82/250 (32%), Positives = 121/250 (48%), Gaps = 44/250 (17%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMN--DTGTLIALDKSKPRVTKL 126
+Q+ S+L L V +VLD CAAPG K THIA ++ + G + ALD +V +
Sbjct: 241 IQDESSMLVAPVLQVARDHQVLDACAAPGGKTTHIAAFLSAAEGGKVTALDIHAHKVKLI 300
Query: 127 EETIKKLQLSSI-QTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP 182
++ ++L + ++ +T V D+ + E FD IL+DAPCSG G ++P
Sbjct: 301 QQNAQRLGVEAVVETRVMDARETAQT---------FAPEQFDSILVDAPCSGLGLMRRKP 351
Query: 183 MFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVE 242
+ + + IQ+++L++ P LKK GI+VY TC++ E
Sbjct: 352 DI----KYSKTEADFQRLPQIQREILES-----------AAPTLKKSGIMVYSTCTILAE 396
Query: 243 ENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTI 302
EN+ V+A L HPE E +P LA L AE +Q + P D TD
Sbjct: 397 ENQQVVAAFLADHPEFE---QMP------LAVGPLAAE---AVQEDMLTIYPQDFMTD-- 442
Query: 303 GFFICKLRKK 312
GFFI LRKK
Sbjct: 443 GFFISCLRKK 452
>gi|448238022|ref|YP_007402080.1| ribosomal RNA small subunit methyltransferase F [Geobacillus sp.
GHH01]
gi|445206864|gb|AGE22329.1| ribosomal RNA small subunit methyltransferase F [Geobacillus sp.
GHH01]
Length = 454
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 99/190 (52%), Gaps = 23/190 (12%)
Query: 73 PSILA-GHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIK 131
PS +A L PG+ VLD+CAAPG K T + +M + G L+A + RV L E ++
Sbjct: 88 PSAMAVAEALRPAPGETVLDLCAAPGGKTTQLGAMMENKGLLVANEIHPKRVKALAENVE 147
Query: 132 KLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFL 191
+ L+ ++ +N + + ER FD+IL+DAPCSG G A SF
Sbjct: 148 RFGLT-------NTVVVNETPEALAERF---PGFFDKILVDAPCSGEGMFRKDEEAASFW 197
Query: 192 NLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWI 251
+ ++ A Q+++L++ Y +LK+ GILVY TC+ S EENE I W+
Sbjct: 198 S-PAYVEECAARQRRILESAY-----------AMLKEGGILVYSTCTFSPEENEQTIEWL 245
Query: 252 LHRHPEVELV 261
L H ++ L+
Sbjct: 246 LEAHDDLRLL 255
>gi|367000333|ref|XP_003684902.1| hypothetical protein TPHA_0C03150 [Tetrapisispora phaffii CBS 4417]
gi|357523199|emb|CCE62468.1| hypothetical protein TPHA_0C03150 [Tetrapisispora phaffii CBS 4417]
Length = 608
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 88/269 (32%), Positives = 122/269 (45%), Gaps = 44/269 (16%)
Query: 55 SQVPNVALDSSMG---ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTG 111
SQVP A + ILQ S L LD Q ++VLDM AAPG K T+I+ LM +TG
Sbjct: 307 SQVPIGATSEYLAGQYILQAASSFLPVVALDPQLNERVLDMAAAPGGKTTYISALMKNTG 366
Query: 112 TLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILL 171
+ A D +K R L I +L ++ YD+ FDRILL
Sbjct: 367 CVFANDANKARTKSLIANIHRLGCTNTIVCNYDAREFPKVIG-----------GFDRILL 415
Query: 172 DAPCSGFGQRPMFYNANSFLNLDKKIKSYANI---QKKLLQAVYRFVSLFDWQGIPLLKK 228
DAPCSG G + + + + K + I QK+LL + V G
Sbjct: 416 DAPCSGTG----VIGKDQSVKVSRTEKDFIQIPHLQKQLLLSAIDSVDANSKTG------ 465
Query: 229 DGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRF 288
G +VY TCS++VEE+EAV+ + L + P V LV T +G +G ++F
Sbjct: 466 -GFIVYSTCSVAVEEDEAVVDYALRKRPNVRLVDTGLAIGKEGFTS--------FRGKKF 516
Query: 289 GPPLIPTDR------NTDTIGFFICKLRK 311
P + T R N D GF++ K +K
Sbjct: 517 HPSVKLTRRYYPHTYNVD--GFYVAKFQK 543
>gi|241895667|ref|ZP_04782963.1| RNA methyltransferase [Weissella paramesenteroides ATCC 33313]
gi|241871034|gb|EER74785.1| RNA methyltransferase [Weissella paramesenteroides ATCC 33313]
Length = 456
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 87/263 (33%), Positives = 122/263 (46%), Gaps = 54/263 (20%)
Query: 61 ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDT--GTLIALDK 118
A + LQ+ ++L LDV PG KVLD AAPG K T IA + T G ++ALD
Sbjct: 237 AFHDGLLTLQDESAMLMVPSLDVHPGDKVLDAAAAPGGKTTQIATYLEKTQGGHVVALDI 296
Query: 119 SKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSG 177
+ ++E +LQ++ I+T V D+ +++ K + E+FDRIL+DAPCSG
Sbjct: 297 HDHKAKLIKENATRLQVADRIETQVLDARKVDE---------KFKDETFDRILVDAPCSG 347
Query: 178 FGQRPMFYNANSFLNLDKKIKSYANIQK---KLLQAVYRFVSLFDWQGIPLLKKDGILVY 234
FG + +K +K +QK +L AV LKK G LVY
Sbjct: 348 FG----LLRRKPEIRYEKSLKDSYQLQKIQLSILDAVAN-----------KLKKGGRLVY 392
Query: 235 CTCSLSVEENEAVIAWILHRHPEVELVQT-----LPQLGMKGLAHKDLEAEDQAVMQRFG 289
TC++ ENE VI L H + +LV T L L +G+ H
Sbjct: 393 GTCTILSTENEDVINEFLAAHNDFKLVPTKTVNNLDVLDTQGMLH--------------- 437
Query: 290 PPLIPTDRNTDTIGFFICKLRKK 312
+ P D +D GFFI L K+
Sbjct: 438 --VYPDDFGSD--GFFIATLVKQ 456
>gi|433454201|ref|ZP_20413052.1| ribosomal RNA small subunit methyltransferase B [Mycoplasma sp.
G5847]
gi|431933444|gb|ELK20031.1| ribosomal RNA small subunit methyltransferase B [Mycoplasma sp.
G5847]
Length = 419
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 126/249 (50%), Gaps = 60/249 (24%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ SIL L+ KVLDMC+APG KLTH++++MN+TG++I + S+ ++ ++E
Sbjct: 227 IQDKASILVSQILNPSLNTKVLDMCSAPGGKLTHLSMIMNNTGSIIGNELSESKIRLIKE 286
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
I +L +I D+ I QK+ FD ILLDAPCSGFG ++P
Sbjct: 287 NILRLNCLNISLTNMDARDIK------------QKQEFDYILLDAPCSGFGVFKRKPEIK 334
Query: 186 NANSFLNLD-KKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
L D K++KS +Q +LL++ Y LK +G +VY TC+++ EN
Sbjct: 335 -----LRFDQKQVKSIIQLQSELLESAYYN-----------LKTNGEMVYSTCTINQNEN 378
Query: 245 EAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
+ I L++H +V+ Q Q FG + NTD GF
Sbjct: 379 QNQINKFLNKHK--NMVKVFEQ-------------------QIFG-----FEENTD--GF 410
Query: 305 FICKLRKKY 313
+ICKL+K++
Sbjct: 411 YICKLKKQH 419
>gi|414152954|ref|ZP_11409281.1| Sun protein [Desulfotomaculum hydrothermale Lam5 = DSM 18033]
gi|411455336|emb|CCO07183.1| Sun protein [Desulfotomaculum hydrothermale Lam5 = DSM 18033]
Length = 453
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 120/247 (48%), Gaps = 38/247 (15%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L H L+ G +V+D+ AAPG K TH+A LM D+G ++A D ++ + +
Sbjct: 239 VQDESSMLVAHVLNPASGARVIDVAAAPGGKTTHLAQLMGDSGQILAFDLYAHKLDLIND 298
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
++L ++SIQT V D+ I+ Q D +L+DAPCSG G +RP
Sbjct: 299 NCRRLGINSIQTKVADARDIHQEYQ----------GWADYVLVDAPCSGLGVLRRRPDAR 348
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
L +K +QK++L + + L+ G+LVY TC++S EEN
Sbjct: 349 WRKDPCQLPGIVK----LQKEILTSASK-----------CLRPGGVLVYSTCTISHEENL 393
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
V+ L HPE L L Q GL + +A R L+P D GFF
Sbjct: 394 GVVEDFLANHPEFSL-GDLRQFLPPGL-------DREATAARGYLQLLPHVHGMD--GFF 443
Query: 306 ICKLRKK 312
+ +LRKK
Sbjct: 444 LARLRKK 450
>gi|261419971|ref|YP_003253653.1| RNA methylase [Geobacillus sp. Y412MC61]
gi|319766785|ref|YP_004132286.1| RNA methylase [Geobacillus sp. Y412MC52]
gi|261376428|gb|ACX79171.1| RNA methylase, NOL1/NOP2/sun family [Geobacillus sp. Y412MC61]
gi|317111651|gb|ADU94143.1| RNA methylase, NOL1/NOP2/sun family [Geobacillus sp. Y412MC52]
Length = 454
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 99/190 (52%), Gaps = 23/190 (12%)
Query: 73 PSILA-GHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIK 131
PS +A L PG+ VLD+CAAPG K T + +M + G L+A + RV L E ++
Sbjct: 88 PSAMAVAEALRPAPGETVLDLCAAPGGKTTQLGAMMENKGLLVANEIHPKRVKALAENVE 147
Query: 132 KLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFL 191
+ L+ ++ +N + + ER FD+IL+DAPCSG G A SF
Sbjct: 148 RFGLT-------NTVVVNETPEALAERF---PGFFDKILVDAPCSGEGMFRKDEEAASFW 197
Query: 192 NLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWI 251
+ ++ A Q+++L++ Y +LK+ GILVY TC+ S EENE I W+
Sbjct: 198 S-PAYVEECAARQRRILESAY-----------AMLKEGGILVYSTCTFSPEENEQTIEWL 245
Query: 252 LHRHPEVELV 261
L H ++ L+
Sbjct: 246 LEAHDDLRLL 255
>gi|419693276|ref|ZP_14221268.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
LMG 9872]
gi|380672870|gb|EIB88013.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
LMG 9872]
Length = 292
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 136/280 (48%), Gaps = 44/280 (15%)
Query: 32 LSIYCYALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLD 91
++ YCY D + + LS + A + + +QN S L L+V+ GQ VLD
Sbjct: 55 INTYCYLFDAKDKAI-------LSSMK--AFNEAHFYIQNYSSYLCALNLEVKAGQSVLD 105
Query: 92 MCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTS 151
MCAAPG K ++A M +TG L + S+ R L++ +K +++ + + D I
Sbjct: 106 MCAAPGGKSINLANFMQNTGYLACNEMSRDRFFILQKNLKNYGVNA-KVFMKDGKNIGNL 164
Query: 152 SQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAV 211
+ FD+ILLDAPCS F + F S+ K+IK+ A QKKLL +
Sbjct: 165 CPL----------KFDKILLDAPCSTFA-KIGFDLEKSY----KEIKNIAKTQKKLLHS- 208
Query: 212 YRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKG 271
+ LK G LVY TC+ + EENE VI L ++EL+ + ++
Sbjct: 209 ----------ALKALKIGGELVYSTCTFTKEENEEVIENALKSEFKLELL----DIDLEN 254
Query: 272 LAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
+ K ++E+ A + + ++P+ D GFFI KLRK
Sbjct: 255 VEAKAGQSEEFAEISK-CRRILPS---LDYDGFFIAKLRK 290
>gi|419588699|ref|ZP_14124517.1| NOL1/NOP2/sun family protein [Campylobacter coli 317/04]
gi|380569391|gb|EIA91832.1| NOL1/NOP2/sun family protein [Campylobacter coli 317/04]
Length = 291
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 88/285 (30%), Positives = 129/285 (45%), Gaps = 46/285 (16%)
Query: 28 QRPSLSIYCYALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQ 87
+ L+ YCY LF+ I + + A + +QN S L LDV+ GQ
Sbjct: 51 EYEKLNEYCY----LFKACDKSILSSMQ-----AFNEFKFYIQNYASYLCALNLDVKAGQ 101
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
VLDMCAAPG K ++A M + G L + SK R L++ +K ++ V+
Sbjct: 102 SVLDMCAAPGGKSINLANFMQNEGYLACNEASKDRFFTLQKNLKNY---GVKARVFMKDG 158
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKL 207
N + ++ FD+ILLDAPCS + + +S K+IK+ A +QKKL
Sbjct: 159 KNIGNLCPLK--------FDKILLDAPCSTLAKMGLELEKSS-----KEIKNIAKLQKKL 205
Query: 208 LQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQ-TLPQ 266
L + + LK G LVY TC+ + EENE VI L ++EL+ L
Sbjct: 206 LHS-----------ALKALKVGGELVYSTCTFTKEENEEVIENALRSDFDIELLDINLEN 254
Query: 267 LGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
K + EA + ++P + + GFFI KLRK
Sbjct: 255 ALAKNGQSSEFEATSKC------KRILPCE---EYDGFFIAKLRK 290
>gi|159902963|ref|YP_001550307.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9211]
gi|159888139|gb|ABX08353.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9211]
Length = 432
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 108/213 (50%), Gaps = 34/213 (15%)
Query: 62 LDSSMGILQNLPSILAGHY-------------LDVQPGQKVLDMCAAPGNKLTHIALLMN 108
+ S MG L+ P G + L+ +PG ++LD C+APG K TH+A L++
Sbjct: 215 ITSGMGDLRKWPGYEGGEWSVQDRSSQWIAPLLEAEPGDRILDACSAPGGKATHLAELID 274
Query: 109 DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDR 168
D G + A+D+S R+ K+ E +L L+S++ D++ + ++ K F R
Sbjct: 275 DNGEIWAVDRSPKRLQKVSENATRLGLNSLKCLAADASML-------LDCKPHWKGYFQR 327
Query: 169 ILLDAPCSGFGQRPMFYNANSFLNLD-KKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLK 227
IL+DAPCSG G + N ++ + +KI +Q +LL+ V +PLL
Sbjct: 328 ILVDAPCSGLGT--LSRNPDARWRMTPEKIDELIILQARLLRGV-----------LPLLS 374
Query: 228 KDGILVYCTCSLSVEENEAVIAWILHRHPEVEL 260
G +VY TC++ EEN + L HP+V+L
Sbjct: 375 PGGRIVYSTCTMHPEENFKQVGEFLALHPKVKL 407
>gi|356569611|ref|XP_003552992.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like
[Glycine max]
Length = 610
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 93/288 (32%), Positives = 133/288 (46%), Gaps = 37/288 (12%)
Query: 39 LDILFRGVAVEITNVLSQVPNVALDSSMG---ILQNLPSILAGHYLDVQPGQKVLDMCAA 95
LD L + V + SQVP A M +LQ+ S L L Q ++V+DM AA
Sbjct: 244 LDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAA 303
Query: 96 PGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQID 155
PG K T+IA LM +TG + A + PR+ L + ++ +S+ YD + ++
Sbjct: 304 PGGKTTYIAALMKNTGIIFANEMKVPRLKSLTGNLHRMGVSNTVVCNYDGKELPKVLGVN 363
Query: 156 IERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFV 215
+ DR+LLDAPCSG G + + +L+ I+ A++QK+L+ A V
Sbjct: 364 V---------VDRVLLDAPCSGTGVISKDESVKTSKSLE-DIQKCAHLQKELILAAIDMV 413
Query: 216 SLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHK 275
G G +VY TCS+ V ENEAVI + L + +V+LV G G
Sbjct: 414 DANSKSG-------GYIVYSTCSIMVAENEAVIDYALKKR-DVKLVPCGLDFGRPGFT-- 463
Query: 276 DLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRKKYGEAP 317
+ QRF P L T R N D GFF+ KL+K P
Sbjct: 464 ------RFREQRFHPSLEKTRRFYPHVQNMD--GFFVAKLKKMSSSKP 503
>gi|325287453|ref|YP_004263243.1| Fmu (Sun) domain-containing protein [Cellulophaga lytica DSM 7489]
gi|324322907|gb|ADY30372.1| Fmu (Sun) domain protein [Cellulophaga lytica DSM 7489]
Length = 403
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 107/207 (51%), Gaps = 33/207 (15%)
Query: 53 VLSQVPNV----ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMN 108
L++ NV A M +Q+ S L GH+LDV+PGQ+V+D CA G K HIA LM
Sbjct: 188 TLTERANVFRTEAFKKGMFEMQDASSQLVGHFLDVKPGQRVVDTCAGAGGKTLHIAALME 247
Query: 109 DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDR 168
+ G LIALD ++ +L+ K+ +I+T DST++ +K S DR
Sbjct: 248 NKGQLIALDIYGNKLKELKRRAKRDGAHNIETREIDSTKV----------IKKLYNSADR 297
Query: 169 ILLDAPCSGFGQRPMFYNANSFLN---LDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPL 225
+L+DAPC+G G +A L LDK K+ Q+++LQ+ R V
Sbjct: 298 VLIDAPCTGLGVLKRNPDAKWKLQPEFLDKITKT----QQEILQSYSRIV---------- 343
Query: 226 LKKDGILVYCTCS-LSVEENEAVIAWI 251
K G LVY TCS L E N+ +IA++
Sbjct: 344 -KSGGKLVYATCSILPQENNDQIIAFL 369
>gi|121613038|ref|YP_001000337.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
81-176]
gi|121504215|gb|EAQ72967.2| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
81-176]
Length = 279
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 136/280 (48%), Gaps = 44/280 (15%)
Query: 32 LSIYCYALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLD 91
++ YCY D + + LS + A + + +QN S L L+V+ GQ VLD
Sbjct: 42 INAYCYLFDAKDKAI-------LSSMK--AFNEAHFYIQNYSSYLCALNLEVKAGQSVLD 92
Query: 92 MCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTS 151
MCAAPG K ++A M +TG L + S+ R L++ +K +++ + + D I
Sbjct: 93 MCAAPGGKSINLANFMQNTGYLACNEMSRDRFFILQKNLKNYGVNA-KVFMKDGKNIGNL 151
Query: 152 SQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAV 211
+ FD+ILLDAPCS F + F S+ K+IK+ A QKKLL +
Sbjct: 152 CPL----------KFDKILLDAPCSTFA-KIGFDLEKSY----KEIKNIAKTQKKLLHS- 195
Query: 212 YRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKG 271
+ LK G LVY TC+ + EENE VI L ++EL+ + ++
Sbjct: 196 ----------ALKALKIGGELVYSTCTFTKEENEEVIENALKSEFKLELL----DIDLEN 241
Query: 272 LAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
+ K ++E+ A + + ++P+ D GFFI KLRK
Sbjct: 242 VEAKAGQSEEFAEISK-CRRILPS---LDYDGFFIAKLRK 277
>gi|57641870|ref|YP_184348.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus kodakarensis KOD1]
gi|57160194|dbj|BAD86124.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family [Thermococcus
kodakarensis KOD1]
Length = 450
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 101/205 (49%), Gaps = 23/205 (11%)
Query: 58 PNVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALD 117
P + I Q S +A L +PG+ V+D+ AAPG K H+A LM + G + A D
Sbjct: 223 PEWLFNKGYAIAQEEASAVASLVLAPKPGETVVDLAAAPGGKTAHMAELMENRGKIYAFD 282
Query: 118 KSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSG 177
R+ +++E +K+ + + D + ++ L +E DR+LLDAPC+
Sbjct: 283 VDSARIKRMKEVLKRTGVEIAEVIKADG---RNAPEL------LGEEIADRVLLDAPCTS 333
Query: 178 FGQRPMFYNANSFLNL-DKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT 236
G + N L +K I +QK+L+++ ++ LLK G L+Y T
Sbjct: 334 DGT--IAKNPELRWRLREKNIPKVVALQKELMESAWK-----------LLKPGGRLLYST 380
Query: 237 CSLSVEENEAVIAWILHRHPEVELV 261
CS+ EENE V+ W L RHP ELV
Sbjct: 381 CSMLPEENEEVVKWFLERHPGAELV 405
>gi|320530184|ref|ZP_08031254.1| ribosomal RNA small subunit methyltransferase B [Selenomonas
artemidis F0399]
gi|320137617|gb|EFW29529.1| ribosomal RNA small subunit methyltransferase B [Selenomonas
artemidis F0399]
Length = 451
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 82/302 (27%), Positives = 134/302 (44%), Gaps = 48/302 (15%)
Query: 11 LWLDRAGFVSVLRLPARQ-RPSLSIYCYALDILFRGVAVEITNVLSQVPNVALDSSMGIL 69
L +DR G + L Q RPS ++ G+ V +L + L + +
Sbjct: 196 LRIDREGLLKKLAAAGAQARPSATVP--------DGIVVTSHGMLDAL--APLREGLCQV 245
Query: 70 QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEET 129
Q+ S+L H L PG V+D CAAPG K THIA M + G + A D + ++ ++E
Sbjct: 246 QDESSMLVAHVLGAAPGMTVIDACAAPGGKTTHIAQRMENRGKIYAFDVYEGKIARIENN 305
Query: 130 IKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANS 189
++L + I+ + D+ I + DR+L+DAPCSGFG +A
Sbjct: 306 ARRLGIDIIEPRLLDAREIGAH----------YAGTADRVLIDAPCSGFGVLRRKPDAR- 354
Query: 190 FLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIA 249
+ +++ + +Q+++L V + G LVY TC++ ENE V+
Sbjct: 355 WRRKPEELGALPKLQQEILAGAAAAV-----------RPGGALVYSTCTMETAENEGVVQ 403
Query: 250 WILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKL 309
L HPE L + L ++ + ED V + PT+ D GFFI ++
Sbjct: 404 RFLELHPEFVLERAGAFLPVQ-------QTEDAMVQ------IFPTEDGGD--GFFIARM 448
Query: 310 RK 311
++
Sbjct: 449 KR 450
>gi|294887892|ref|XP_002772268.1| Proliferating-cell nucleolar antigen p120, putative [Perkinsus
marinus ATCC 50983]
gi|239876343|gb|EER04084.1| Proliferating-cell nucleolar antigen p120, putative [Perkinsus
marinus ATCC 50983]
Length = 658
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 91/304 (29%), Positives = 138/304 (45%), Gaps = 53/304 (17%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RG VE T ++V +S + I P L+G Y L+ Q
Sbjct: 280 AQQLIARGCQVEPTGEWTKVGLTVKESKVPIGAT-PEYLSGRYMLQSASSFVPVQALNAQ 338
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
PG+ VLDM AAPG K T+I +M + G L A D + R T L + +L LS++
Sbjct: 339 PGETVLDMSAAPGGKTTYIGQMMQNQGVLFANDLREDRCTALIANVHRLGLSNV------ 392
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY---A 201
+ +D ++K DR+LLDAPCSG G + + + + +K + A
Sbjct: 393 -----VVTAMDGRKLKDMLPKLDRVLLDAPCSGSG----IIARDPKIKVKRNVKEFTEHA 443
Query: 202 NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILH-RHPEVEL 260
+Q++LL + V + G++VY TCS++VEE+E VI IL R+ V
Sbjct: 444 ALQRELLLSAIDMVDA----DTKTTGEGGVVVYSTCSMAVEEDEMVIDAILKARNVRVVA 499
Query: 261 VQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRKKYG 314
+ G +G ++F P L + R N D GFF+CKL+K
Sbjct: 500 FDDVVNFGSEGFTS--------FRGKQFHPSLKHSRRFFPHVHNMD--GFFVCKLQKFSN 549
Query: 315 EAPE 318
E P+
Sbjct: 550 EIPQ 553
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.323 0.138 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,075,417,547
Number of Sequences: 23463169
Number of extensions: 248012557
Number of successful extensions: 639386
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5074
Number of HSP's successfully gapped in prelim test: 2925
Number of HSP's that attempted gapping in prelim test: 617811
Number of HSP's gapped (non-prelim): 8987
length of query: 397
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 252
effective length of database: 8,957,035,862
effective search space: 2257173037224
effective search space used: 2257173037224
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 78 (34.7 bits)