BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17793
(397 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A4T|A Chain A, Crystal Structure Of Atrm4 From M.Jannaschii With
Sinefungin
pdb|3A4T|B Chain B, Crystal Structure Of Atrm4 From M.Jannaschii With
Sinefungin
pdb|3AJD|A Chain A, Crystal Structure Of Atrm4
Length = 274
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 128/242 (52%), Gaps = 36/242 (14%)
Query: 70 QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEET 129
Q++ S++ L+ + +LDMCAAPG K TH+A LM + GT++A++ SK R L+
Sbjct: 68 QSISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSN 127
Query: 130 IKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANS 189
I ++ V ++ IN + + + + FD+ILLDAPCSG + + N
Sbjct: 128 INRM-------GVLNTIIINADMRKYKDYLLKNEIFFDKILLDAPCSG----NIIKDKNR 176
Query: 190 FLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIA 249
N+ ++ Y ++++K L + GI LLKKDG LVY TCS+ VEENE VI
Sbjct: 177 --NVSEEDIKYCSLRQKELIDI----------GIDLLKKDGELVYSTCSMEVEENEEVIK 224
Query: 250 WILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKL 309
+IL + +VEL+ + KG+ K E + ++ F PP P FFI KL
Sbjct: 225 YILQKRNDVELI-IIKANEFKGINIK--EGYIKGTLRVF-PPNEP---------FFIAKL 271
Query: 310 RK 311
RK
Sbjct: 272 RK 273
>pdb|2YXL|A Chain A, Crystal Structure Of Ph0851
Length = 450
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 108/201 (53%), Gaps = 21/201 (10%)
Query: 61 ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSK 120
A + I+Q S +A LD +PG+ V+D+ AAPG K TH+A LM + G + A D K
Sbjct: 235 AFNEGKIIVQEEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDK 294
Query: 121 PRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQ 180
R+ +L++ +K++ + ++ V D+ + + +I + +E D++LLDAPC+ G
Sbjct: 295 MRMKRLKDFVKRMGIKIVKPLVKDARK---APEI------IGEEVADKVLLDAPCTSSGT 345
Query: 181 RPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLS 240
L D KI + +Q++LL++ R L+K G L+Y TCS+
Sbjct: 346 IGKNPELRWRLRED-KINEMSQLQRELLESAAR-----------LVKPGGRLLYTTCSIF 393
Query: 241 VEENEAVIAWILHRHPEVELV 261
EENE I W L+ HPE +LV
Sbjct: 394 KEENEKNIRWFLNVHPEFKLV 414
>pdb|3M6U|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group 43
pdb|3M6U|B Chain B, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group 43
pdb|3M6V|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P2 In Complex With
S-Adenosyl-L- Methionine
pdb|3M6V|B Chain B, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P2 In Complex With
S-Adenosyl-L- Methionine
Length = 464
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 80/185 (43%), Gaps = 27/185 (14%)
Query: 78 GHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS 137
G LD +PG++VLD+ AAPG K TH+A M G L+A + RV L E +++
Sbjct: 94 GVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPL 153
Query: 138 IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLN--LDK 195
T F R+LLDAPCSG G MF
Sbjct: 154 AVTQAPPRALAEAFGTY-----------FHRVLLDAPCSGEG---MFRKDREAARHWGPS 199
Query: 196 KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRH 255
K A +QK LL R LL G+LVY TC+ + EENE V+A L H
Sbjct: 200 APKRMAEVQKALLAQASR-----------LLGPGGVLVYSTCTFAPEENEGVVAHFLKAH 248
Query: 256 PEVEL 260
PE L
Sbjct: 249 PEFRL 253
>pdb|3M6W|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P21212 In Complex
With S-Adenosyl-L- Methionine
Length = 464
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 80/185 (43%), Gaps = 27/185 (14%)
Query: 78 GHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS 137
G LD +PG++VLD+ AAPG K TH+A M G L+A + RV L E +++
Sbjct: 94 GVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPL 153
Query: 138 IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLN--LDK 195
T F R+LLDAPCSG G MF
Sbjct: 154 AVTQAPPRALAEAFGTY-----------FHRVLLDAPCSGEG---MFRKDREAARHWGPS 199
Query: 196 KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRH 255
K A +QK LL R LL G+LVY TC+ + EENE V+A L H
Sbjct: 200 APKRMAEVQKALLAQASR-----------LLGPGGVLVYSTCTFAPEENEGVVAHFLKAH 248
Query: 256 PEVEL 260
PE L
Sbjct: 249 PEFRL 253
>pdb|1IXK|A Chain A, Crystal Structure Analysis Of Methyltransferase Homolog
Protein From Pyrococcus Horikoshii
Length = 315
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 114/241 (47%), Gaps = 50/241 (20%)
Query: 81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ-LSSIQ 139
LD +PG+ V D AAPG K +++A L + G + A D + R+ + + +L L+ I
Sbjct: 114 LDPKPGEIVADXAAAPGGKTSYLAQLXRNDGVIYAFDVDENRLRETRLNLSRLGVLNVIL 173
Query: 140 THVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLN-LDKKIK 198
H SS + I + ++ FD+ILLDAPC+G G + N N IK
Sbjct: 174 FH---------SSSLHIGELNVE---FDKILLDAPCTGSGT--IHKNPERKWNRTXDDIK 219
Query: 199 SYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEV 258
+Q +LL+ +G+ +LK GILVY TCSL EENE VI W L +V
Sbjct: 220 FCQGLQXRLLE-----------KGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNF-DV 267
Query: 259 ELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNT--------DTIGFFICKLR 310
EL LP L+ + A+ FG L +N +T GFFI K+R
Sbjct: 268 EL---LP-----------LKYGEPALTNPFGIELSEEIKNARRLYPDVHETSGFFIAKIR 313
Query: 311 K 311
K
Sbjct: 314 K 314
>pdb|3M6X|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P21212
Length = 464
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 78/183 (42%), Gaps = 23/183 (12%)
Query: 78 GHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS 137
G LD +PG++VLD+ AAPG K TH+A G L+A + RV L E +++
Sbjct: 94 GVLLDPKPGERVLDLAAAPGGKTTHLAARXGGKGLLLANEVDGKRVRGLLENVERWGAPL 153
Query: 138 IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKI 197
T F R+LLDAPCSG G A
Sbjct: 154 AVTQAPPRALAEAFGTY-----------FHRVLLDAPCSGEGXFRKDREAARHWG-PSAP 201
Query: 198 KSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPE 257
K A +QK LL R LL G+LVY TC+ + EENE V+A L HPE
Sbjct: 202 KRXAEVQKALLAQASR-----------LLGPGGVLVYSTCTFAPEENEGVVAHFLKAHPE 250
Query: 258 VEL 260
L
Sbjct: 251 FRL 253
>pdb|2FRX|A Chain A, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
pdb|2FRX|B Chain B, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
pdb|2FRX|C Chain C, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
pdb|2FRX|D Chain D, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
Length = 479
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 111/237 (46%), Gaps = 35/237 (14%)
Query: 76 LAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL 135
+A + D Q+V D+ AAPG+K T I+ N+ G ++A + S RV L I + +
Sbjct: 108 VAALFADGNAPQRVXDVAAAPGSKTTQISARXNNEGAILANEFSASRVKVLHANISRCGI 167
Query: 136 SSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLD- 194
S++ +D + E FD ILLDAPCSG G + + ++ N
Sbjct: 168 SNVALTHFDGRVFGAAV----------PEXFDAILLDAPCSGEGV--VRKDPDALKNWSP 215
Query: 195 KKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHR 254
+ + A Q++L+ + + L+ G LVY TC+L+ EENEAV W+
Sbjct: 216 ESNQEIAATQRELIDSAFH-----------ALRPGGTLVYSTCTLNQEENEAVCLWLKET 264
Query: 255 HPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
+P+ V+ LP + A+K L E + F P I D GFF+ +LRK
Sbjct: 265 YPDA--VEFLPLGDLFPGANKALTEE--GFLHVF--PQI-----YDCEGFFVARLRK 310
>pdb|1SQF|A Chain A, The Crystal Structure Of E. Coli Fmu Binary Complex With
S- Adenosylmethionine At 2.1 A Resolution
pdb|1SQG|A Chain A, The Crystal Structure Of The E. Coli Fmu Apoenzyme At 1.65
A Resolution
Length = 429
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 95/190 (50%), Gaps = 35/190 (18%)
Query: 80 YLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQ 139
+L Q G+ +LD+CAAPG K THI L + ++A+D + R++++ + +K+L + +
Sbjct: 241 WLAPQNGEHILDLCAAPGGKTTHI-LEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKA-- 297
Query: 140 THVYDSTRINTSSQIDIERMKLQ---KESFDRILLDAPCSGFG---QRPMFYNANSFLNL 193
T Q D R Q ++ FDRILLDAPCS G + P +L
Sbjct: 298 ----------TVKQGD-GRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDI----KWLRR 342
Query: 194 DKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILH 253
D+ I A +Q ++L A++ P LK G LVY TCS+ EEN I L
Sbjct: 343 DRDIPELAQLQSEILDAIW-----------PHLKTGGTLVYATCSVLPEENSLQIKAFLQ 391
Query: 254 RHPEVELVQT 263
R + EL +T
Sbjct: 392 RTADAELCET 401
>pdb|3M4X|A Chain A, Structure Of A Ribosomal Methyltransferase
Length = 456
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 95/201 (47%), Gaps = 30/201 (14%)
Query: 70 QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEET 129
Q + + G +PG+KVLD+CAAPG K T +A G L+ + R L E
Sbjct: 90 QEPSAXIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQXKGKGLLVTNEIFPKRAKILSEN 149
Query: 130 IKKLQLS-SIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
I++ +S +I T+ + + S FDRI++DAPCSG G + N
Sbjct: 150 IERWGVSNAIVTNHAPAELVPHFSGF-----------FDRIVVDAPCSGEGX--FRKDPN 196
Query: 189 SFLNLDKKIKSYANI-QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
+ ++ Y Q+++L + I LK G L+Y TC+ + EENE +
Sbjct: 197 AIKEWTEESPLYCQKRQQEILSSA-----------IKXLKNKGQLIYSTCTFAPEENEEI 245
Query: 248 IAWILHRHP----EVELVQTL 264
I+W++ +P E+ L Q++
Sbjct: 246 ISWLVENYPVTIEEIPLTQSV 266
>pdb|2B9E|A Chain A, Human Nsun5 Protein
Length = 309
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 88/208 (42%), Gaps = 22/208 (10%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
ILQ+ S L LD PG V+D CAAPGNK +H+A L+ + G + A D R+ +
Sbjct: 85 ILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMA 144
Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRP-MFYN 186
+ + +S + D ++ S + ILLD CSG G
Sbjct: 145 TLLARAGVSCCELAEEDFLAVSPSDP--------RYHEVHYILLDPSCSGSGMPSRQLEE 196
Query: 187 ANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEA 246
+ ++ + A Q++ L F SL LVY TCSL EENE
Sbjct: 197 PGAGTPSPVRLHALAGFQQRALCHALTFPSL------------QRLVYSTCSLCQEENED 244
Query: 247 VIAWILHRHP-EVELVQTLPQLGMKGLA 273
V+ L ++P L LP +GL+
Sbjct: 245 VVRDALQQNPGAFRLAPALPAWPHRGLS 272
>pdb|4FP9|A Chain A, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|C Chain C, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|D Chain D, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|F Chain F, Human Mterf4-Nsun4 Protein Complex
Length = 360
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/256 (28%), Positives = 117/256 (45%), Gaps = 39/256 (15%)
Query: 2 RDIQSQCYCLW-LDRAGFVSVLRLPARQRPSLSIYCYALDILFRGVAVEITNVLSQVPNV 60
+D ++ W L G S PA S ++ C+ D RG +S+ P
Sbjct: 72 KDFVNEAISHWELQSEGGQSAAPSPASWACSPNLRCFTFD---RGD-------ISRFPP- 120
Query: 61 ALDSSMGILQ----NLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTG---TL 113
A S+G+++ + S+L L +QPG VLD+CAAPG K +ALL TG L
Sbjct: 121 ARPGSLGVMEYYLMDAASLLPVLALGLQPGDIVLDLCAAPGGKT--LALL--QTGCCRNL 176
Query: 114 IALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDA 173
A D S R+ +L++ + S + + D ++ +S + +L+ +++DR+L+D
Sbjct: 177 AANDLSPSRIARLQKILH----SYVPEEIRDGNQVRVTSWDGRKWGELEGDTYDRVLVDV 232
Query: 174 PCSGFGQRPMFYNANSFLNLDKKIKSYANI-QKKLLQAVYRFVSLFDWQGIPLLKKDGIL 232
PC+ N F KK + + Q +LL A G+ K G +
Sbjct: 233 PCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAA-----------GLLATKPGGHV 281
Query: 233 VYCTCSLSVEENEAVI 248
VY TCSLS +NE V+
Sbjct: 282 VYSTCSLSHLQNEYVV 297
>pdb|4FZV|A Chain A, Crystal Structure Of The Human Mterf4:nsun4:sam Ternary
Complex
Length = 359
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/256 (29%), Positives = 116/256 (45%), Gaps = 39/256 (15%)
Query: 2 RDIQSQCYCLW-LDRAGFVSVLRLPARQRPSLSIYCYALDILFRGVAVEITNVLSQVPNV 60
+D ++ W L G S PA S ++ C+ D RG +S+ P
Sbjct: 71 KDFVNEAISHWELQSEGGQSAAPSPASWACSPNLRCFTFD---RGD-------ISRFPP- 119
Query: 61 ALDSSMGI----LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTG---TL 113
A S+G+ L + S+L L +QPG VLD+CAAPG K +ALL TG L
Sbjct: 120 ARPGSLGVXEYYLXDAASLLPVLALGLQPGDIVLDLCAAPGGKT--LALLQ--TGCCRNL 175
Query: 114 IALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDA 173
A D S R+ +L++ + S + + D ++ +S + +L+ +++DR+L+D
Sbjct: 176 AANDLSPSRIARLQKILH----SYVPEEIRDGNQVRVTSWDGRKWGELEGDTYDRVLVDV 231
Query: 174 PCSGFGQRPMFYNANSFLNLDKKIKSYANI-QKKLLQAVYRFVSLFDWQGIPLLKKDGIL 232
PC+ N F KK + + Q +LL A G+ K G +
Sbjct: 232 PCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAA-----------GLLATKPGGHV 280
Query: 233 VYCTCSLSVEENEAVI 248
VY TCSLS +NE V+
Sbjct: 281 VYSTCSLSHLQNEYVV 296
>pdb|2AS0|A Chain A, Crystal Structure Of Ph1915 (Apc 5817): A Hypothetical Rna
Methyltransferase
pdb|2AS0|B Chain B, Crystal Structure Of Ph1915 (Apc 5817): A Hypothetical Rna
Methyltransferase
Length = 396
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 71/162 (43%), Gaps = 37/162 (22%)
Query: 83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHV 142
VQPG +VLD+ G H A+ D +I +DKS PR + + KL V
Sbjct: 215 VQPGDRVLDVFTYTGGFAIHAAIAGADE--VIGIDKS-PRAIETAKENAKL------NGV 265
Query: 143 YDSTRINTSSQIDIERMKLQK--ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY 200
D + S + E KLQK E FD ++LD P F Q +L +++Y
Sbjct: 266 EDRXKFIVGSAFE-EXEKLQKKGEKFDIVVLDPPA--FVQHEK--------DLKAGLRAY 314
Query: 201 ANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVE 242
N+ ++ G+ L+K GILV C+CS V+
Sbjct: 315 FNV---------------NFAGLNLVKDGGILVTCSCSQHVD 341
>pdb|2CWW|A Chain A, Crystal Structure Of Thermus Thermophilus Ttha1280, A
Putative Sam- Dependent Rna Methyltransferase, In
Complex With S-Adenosyl-L- Homocysteine
pdb|2CWW|B Chain B, Crystal Structure Of Thermus Thermophilus Ttha1280, A
Putative Sam- Dependent Rna Methyltransferase, In
Complex With S-Adenosyl-L- Homocysteine
Length = 382
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 70/165 (42%), Gaps = 37/165 (22%)
Query: 80 YLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQ 139
Y++ G++ LD+ + G H+AL + ++A+D S + + EE + L ++
Sbjct: 204 YMERFRGERALDVFSYAGGFALHLALGFRE---VVAVDSSAEALRRAEENARLNGLGNV- 259
Query: 140 THVYDSTRINTSSQIDI-ERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIK 198
R+ ++ D+ R++ + E FD ++LD P G
Sbjct: 260 -------RVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKG------------------- 293
Query: 199 SYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEE 243
KK ++ YR + + I LLK+ GIL +CS + E
Sbjct: 294 ------KKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTE 332
>pdb|1WXW|A Chain A, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXW|B Chain B, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXW|C Chain C, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXW|D Chain D, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXX|A Chain A, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXX|B Chain B, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXX|C Chain C, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXX|D Chain D, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
Length = 382
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 67/160 (41%), Gaps = 37/160 (23%)
Query: 80 YLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQ 139
Y + G++ LD+ + G H+AL + ++A+D S + + EE + L ++
Sbjct: 204 YXERFRGERALDVFSYAGGFALHLALGFRE---VVAVDSSAEALRRAEENARLNGLGNV- 259
Query: 140 THVYDSTRINTSSQIDI-ERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIK 198
R+ ++ D+ R++ + E FD ++LD P G
Sbjct: 260 -------RVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKG------------------- 293
Query: 199 SYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS 238
KK ++ YR + + I LLK+ GIL +CS
Sbjct: 294 ------KKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 327
>pdb|2YXE|A Chain A, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
pdb|2YXE|B Chain B, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
Length = 215
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 35/66 (53%)
Query: 81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQT 140
LD++PG KVL++ G A ++ + G ++++++ K E T++KL ++
Sbjct: 73 LDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIV 132
Query: 141 HVYDST 146
V D T
Sbjct: 133 IVGDGT 138
>pdb|1NT2|A Chain A, Crystal Structure Of FibrillarinNOP5P COMPLEX
Length = 210
Score = 34.7 bits (78), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 75 ILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKK 132
IL GH L ++ ++VL + AA G ++H+A ++ D G + A++ S KL E +++
Sbjct: 47 ILKGHRLKLRGDERVLYLGAASGTTVSHLADIV-DEGIIYAVEYSAKPFEKLLELVRE 103
>pdb|1YB2|A Chain A, Structure Of A Putative Methyltransferase From
Thermoplasma Acidophilum
Length = 275
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 42/92 (45%), Gaps = 11/92 (11%)
Query: 83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHV 142
++PG +L++ GN ++I +N GTL +++ + + K + + +
Sbjct: 108 LRPGXDILEVGVGSGNXSSYILYALNGKGTLTVVERDEDNLKKAXDNLSEF--------- 158
Query: 143 YDSTRINTSSQIDIERMKLQKESFDRILLDAP 174
YD + TS DI + + +D ++ D P
Sbjct: 159 YDIGNVRTSRS-DIADF-ISDQXYDAVIADIP 188
>pdb|1UWV|A Chain A, Crystal Structure Of Ruma, The Iron-Sulfur Cluster
Containing E. Coli 23s Ribosomal Rna 5-Methyluridine
Methyltransferase
Length = 433
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Query: 79 HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSI 138
+LDVQP +VLD+ GN +A +++ ++ V K ++ + L+ +
Sbjct: 280 EWLDVQPEDRVLDLFCGXGNFTLPLA---TQAASVVGVEGVPALVEKGQQNAR---LNGL 333
Query: 139 QTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSG 177
Q + T + + + D+ + K FD++LLD +G
Sbjct: 334 Q----NVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAG 368
>pdb|2BH2|A Chain A, Crystal Structure Of E. Coli 5-Methyluridine
Methyltransferase Ruma In Complex With Ribosomal Rna
Substrate And S-Adenosylhomocysteine.
pdb|2BH2|B Chain B, Crystal Structure Of E. Coli 5-Methyluridine
Methyltransferase Ruma In Complex With Ribosomal Rna
Substrate And S-Adenosylhomocysteine
Length = 433
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Query: 79 HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSI 138
+LDVQP +VLD+ GN +A +++ ++ V K ++ + L+ +
Sbjct: 280 EWLDVQPEDRVLDLFCGMGNFTLPLA---TQAASVVGVEGVPALVEKGQQNAR---LNGL 333
Query: 139 QTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSG 177
Q + T + + + D+ + K FD++LLD +G
Sbjct: 334 Q----NVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAG 368
>pdb|3D79|A Chain A, Crystal Structure Of Hypothetical Protein Ph0734.1 From
Hyperthermophilic Archaea Pyrococcus Horikoshii Ot3
Length = 179
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 345 PVQIIVDQPCALAVLRGADVFAPGVLAMPLG 375
P +++VD+ +L GADV APG++ G
Sbjct: 94 PRRVVVDEGAVPHILNGADVMAPGIVDADEG 124
>pdb|3DH0|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
pdb|3DH0|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
Length = 219
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 33/66 (50%)
Query: 83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHV 142
++ G VLD+ G L +++ ++ + G + A+D + V E + KL L +++
Sbjct: 35 LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLK 94
Query: 143 YDSTRI 148
+ +I
Sbjct: 95 SEENKI 100
>pdb|2IPX|A Chain A, Human Fibrillarin
Length = 233
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 74 SILAG-HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKS 119
+IL G + ++PG KVL + AA G ++H++ ++ G + A++ S
Sbjct: 65 AILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFS 111
>pdb|1W63|Q Chain Q, Ap1 Clathrin Adaptor Core
pdb|1W63|S Chain S, Ap1 Clathrin Adaptor Core
pdb|1W63|T Chain T, Ap1 Clathrin Adaptor Core
pdb|1W63|U Chain U, Ap1 Clathrin Adaptor Core
pdb|1W63|W Chain W, Ap1 Clathrin Adaptor Core
pdb|1W63|X Chain X, Ap1 Clathrin Adaptor Core
Length = 158
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 198 KSYANIQKKLLQAVY----RFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILH 253
K + ++L+Q V + S +W+ + ++ K +Y C++ ++NE + ++H
Sbjct: 26 KERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNELITLELIH 85
Query: 254 RHPEV 258
R+ E+
Sbjct: 86 RYVEL 90
>pdb|3NBU|A Chain A, Crystal Structure Of Pgi Glucosephosphate Isomerase
pdb|3NBU|B Chain B, Crystal Structure Of Pgi Glucosephosphate Isomerase
pdb|3NBU|C Chain C, Crystal Structure Of Pgi Glucosephosphate Isomerase
pdb|3NBU|D Chain D, Crystal Structure Of Pgi Glucosephosphate Isomerase
pdb|3NBU|E Chain E, Crystal Structure Of Pgi Glucosephosphate Isomerase
pdb|3NBU|F Chain F, Crystal Structure Of Pgi Glucosephosphate Isomerase
Length = 549
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 44/99 (44%), Gaps = 8/99 (8%)
Query: 80 YLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVT-----KLEETIKKLQ 134
+ D + D+ A G++ + + +D + +D SK R+T KL++ K+
Sbjct: 18 HFDEMKDVTIADLFAKDGDRFSKFSATFDDQ---MLVDYSKNRITEETLAKLQDLAKECD 74
Query: 135 LSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDA 173
L+ ++ +IN + + + L+ S IL+D
Sbjct: 75 LAGAIKSMFSGEKINRTENRAVLHVALRNRSNTPILVDG 113
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,484,776
Number of Sequences: 62578
Number of extensions: 463085
Number of successful extensions: 1219
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1170
Number of HSP's gapped (non-prelim): 29
length of query: 397
length of database: 14,973,337
effective HSP length: 101
effective length of query: 296
effective length of database: 8,652,959
effective search space: 2561275864
effective search space used: 2561275864
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)