BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17793
(397 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7TS68|NSUN6_MOUSE Putative methyltransferase NSUN6 OS=Mus musculus GN=Nsun6 PE=2 SV=2
Length = 476
Score = 179 bits (455), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 113/291 (38%), Positives = 156/291 (53%), Gaps = 38/291 (13%)
Query: 43 FRGVAVEITNVLSQVPNV-ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLT 101
+G+ + +T + P+ + S LQNLPS + H LD QPG+K+LDMCAAPG K T
Sbjct: 191 LKGIGIRMTEPIYLSPSFDNVLPSYIFLQNLPSTVVAHVLDPQPGEKILDMCAAPGGKTT 250
Query: 102 HIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDST---RINTSSQIDIER 158
H A LM D G +IALDK +V KL++ L L SI+ +D+T +++T+ I+
Sbjct: 251 HTAALMQDKGEVIALDKILTKVNKLKQNASLLGLHSIRAFCFDATKALKLDTTDGIEGGP 310
Query: 159 MKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLF 218
L ESFDRI+LDAPCSG GQRP + K++ SY +Q+KLL
Sbjct: 311 PFL-PESFDRIILDAPCSGMGQRPNMACTWTL----KEVTSYQPLQRKLLHVA------- 358
Query: 219 DWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLE 278
+ LLK G+LVY TC++++ ENE +AW L P ++L PQ+G +G+ L
Sbjct: 359 ----VQLLKPGGVLVYSTCTITLAENEEQVAWALRTFPCLQLQPQEPQIGGEGMVGAGLT 414
Query: 279 AEDQAVMQRFGPPLIP-----TDR-------------NTDTIGFFICKLRK 311
E +QRF P ++P TD N D IGFFI K K
Sbjct: 415 LEQLKQLQRFDPSVVPLQNMDTDSLGEARREDMIWLANKDCIGFFIAKFLK 465
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 303 GFFICKLRKKYGEAP-EIYIHPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRG 361
G + +L+K++GE+ + HP L D ++I P+ +++ ++IV C AVLRG
Sbjct: 69 GLLLEELQKQFGESSIPVVQHPALPDVLLI-PMTGPRKNIERQQGEVIVGAQCGNAVLRG 127
Query: 362 ADVFAPGVLA 371
A V+ PG+++
Sbjct: 128 AHVYVPGIVS 137
>sp|Q8TEA1|NSUN6_HUMAN Putative methyltransferase NSUN6 OS=Homo sapiens GN=NSUN6 PE=1 SV=1
Length = 469
Score = 178 bits (452), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 112/292 (38%), Positives = 157/292 (53%), Gaps = 40/292 (13%)
Query: 43 FRGVAVEITNVLSQVPNVALDSSMG---ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNK 99
+G+ + +T + P + DS + LQNLPS L H L+ QPG+K+LD+CAAPG K
Sbjct: 191 LKGMGIRMTEPVYLSP--SFDSVLPRYLFLQNLPSALVSHVLNPQPGEKILDLCAAPGGK 248
Query: 100 LTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERM 159
THIA LM+D G +IALDK +V K+++ L L+SI+ +D T+ ++
Sbjct: 249 TTHIAALMHDQGEVIALDKIFNKVEKIKQNALLLGLNSIRAFCFDGTKAVKLDMVEDTEG 308
Query: 160 K--LQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSL 217
+ ESFDRILLDAPCSG GQRP S K++ SY +Q+KL A
Sbjct: 309 EPPFLPESFDRILLDAPCSGMGQRPNMACTWSV----KEVASYQPLQRKLFTAA------ 358
Query: 218 FDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDL 277
+ LLK +G+LVY TC++++ ENE +AW L + P ++L PQ+G +G+ L
Sbjct: 359 -----VQLLKPEGVLVYSTCTITLAENEEQVAWALTKFPCLQLQPQEPQIGGEGMRGAGL 413
Query: 278 EAEDQAVMQRFGPPLIP---TD---------------RNTDTIGFFICKLRK 311
E +QRF P +P TD N D+IGFFI K K
Sbjct: 414 SCEQLKQLQRFDPSAVPLPDTDMDSLREARREDMLRLANKDSIGFFIAKFVK 465
Score = 40.4 bits (93), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 308 KLRKKY-GEAPEIYIHPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFA 366
+L+K++ G + I HP L D ++I P++ +++ + IV C AVLRGA V+A
Sbjct: 74 ELQKQFNGLSVPILQHPDLQDVLLI-PVIGPRKNIKKQQCEAIVGAQCGNAVLRGAHVYA 132
Query: 367 PGVLA 371
PG+++
Sbjct: 133 PGIVS 137
>sp|O94268|NOP2_SCHPO Putative ribosomal RNA methyltransferase nop2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBP8B7.20c PE=1 SV=1
Length = 608
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 144/311 (46%), Gaps = 58/311 (18%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV +E S+V +S + I P LAGHY L QP +
Sbjct: 283 LINRGVNLEPIGKWSKVGLQVFESQVPIGA-TPEYLAGHYILQAASSFLPVMALAPQPNE 341
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
++LDM +APG K+T++A L +TG + A D +K R L I +L + + YD
Sbjct: 342 RILDMSSAPGGKVTYVAALQKNTGIIFANDSNKARTKALSANIHRLGVRNAIVCNYDG-- 399
Query: 148 INTSSQIDIERMKLQKE---SFDRILLDAPCSGFGQRPMFYNANSFLN--LDKKIKSYAN 202
K E FDR+LLDAPCSG G + Y S ++ + ++
Sbjct: 400 -----------RKFPNEVIGGFDRVLLDAPCSGTG---VIYKDQSVKTNKSERDFDTLSH 445
Query: 203 IQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQ 262
+Q++LL + V+ G G +VY TCS++V+E+EAVI + L + P V+LV
Sbjct: 446 LQRQLLLSAIDSVNADSKTG-------GFIVYSTCSITVDEDEAVIQYALKKRPNVKLVS 498
Query: 263 TLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRKKYGEA 316
T + G +G + +RF P L T R N D GFF+ KL+K +
Sbjct: 499 TGLEFGREGFT--------RFREKRFHPSLKLTRRYYPHVHNID--GFFVAKLKKISDKI 548
Query: 317 PEIYIHPHLND 327
P + + + D
Sbjct: 549 PTVNVADDMKD 559
>sp|P94464|RSMB_BACSU Ribosomal RNA small subunit methyltransferase B OS=Bacillus
subtilis (strain 168) GN=rsmB PE=3 SV=2
Length = 447
Score = 115 bits (288), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 123/248 (49%), Gaps = 40/248 (16%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ S+L LD + + VLD CAAPG K HIA LM + G++ +LD K +V ++E
Sbjct: 235 IQDESSMLVARALDPKSDETVLDACAAPGGKSAHIAELMKNKGSVTSLDLHKHKVKLIKE 294
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP-MF 184
+L L+ I D+ + + + E FDRIL+DAPCSGFG ++P M
Sbjct: 295 AADRLGLTIIHAETMDARKAGET---------FENEQFDRILVDAPCSGFGVIRRKPDMK 345
Query: 185 YNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
Y D + A IQ +L+ + PL+KK G LVY TC++ EN
Sbjct: 346 YTKKP----DDSAR-LAEIQLSILREI-----------APLVKKGGTLVYSTCTMDRTEN 389
Query: 245 EAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
+ VI + HP+ E P L ++ K L + + ++ ++P TD GF
Sbjct: 390 DEVIHAFIQEHPDFE-----PDLSLE----KRLPEKVRPFVRDGRLQILPHYFGTD--GF 438
Query: 305 FICKLRKK 312
FIC +RKK
Sbjct: 439 FICSMRKK 446
>sp|Q60343|TRM4_METJA tRNA (cytosine(48)-C(5))-methyltransferase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=trm4 PE=1 SV=1
Length = 274
Score = 112 bits (279), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 128/242 (52%), Gaps = 36/242 (14%)
Query: 70 QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEET 129
Q++ S++ L+ + +LDMCAAPG K TH+A LM + GT++A++ SK R L+
Sbjct: 68 QSISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSN 127
Query: 130 IKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANS 189
I ++ V ++ IN + + + + FD+ILLDAPCSG + + N
Sbjct: 128 INRM-------GVLNTIIINADMRKYKDYLLKNEIFFDKILLDAPCSG----NIIKDKNR 176
Query: 190 FLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIA 249
N+ ++ Y ++++K L + GI LLKKDG LVY TCS+ VEENE VI
Sbjct: 177 --NVSEEDIKYCSLRQKELIDI----------GIDLLKKDGELVYSTCSMEVEENEEVIK 224
Query: 250 WILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKL 309
+IL + +VEL+ + KG+ K E + ++ F PP P FFI KL
Sbjct: 225 YILQKRNDVELI-IIKANEFKGINIK--EGYIKGTLRVF-PPNEP---------FFIAKL 271
Query: 310 RK 311
RK
Sbjct: 272 RK 273
>sp|Q922K7|NOP2_MOUSE Putative ribosomal RNA methyltransferase NOP2 OS=Mus musculus
GN=Nop2 PE=2 SV=1
Length = 793
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 99/313 (31%), Positives = 143/313 (45%), Gaps = 56/313 (17%)
Query: 41 ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
++ RGV ++ S+ V DSS+ I P LAGHY L Q +
Sbjct: 313 LINRGVNLDPLGKWSKSGLVVYDSSVPIGAT-PEYLAGHYMLQGASSMLPVMALAPQEHE 371
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
++LDMC APG K ++IA LM +TG ++A D + R+ + + +L +++ YD +
Sbjct: 372 RILDMCCAPGGKTSYIAQLMKNTGVILANDANADRLKSVVGNLHRLGVTNTIISHYDGRQ 431
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANIQKK 206
FDR+LLDAPCSG G + + N D+K I+ A++QK+
Sbjct: 432 FPKVVG-----------GFDRVLLDAPCSGTGV--ISKDPAVKTNKDEKDIQRCAHLQKE 478
Query: 207 LLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQ 266
LL + V+ G G LVYCTCS++VEENE V+ + L + V LV T
Sbjct: 479 LLLSAIDSVNAASKTG-------GYLVYCTCSITVEENEWVVDYALKKR-NVRLVPTGLD 530
Query: 267 LGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRKKYGEAPEIY 320
G +G + +RF P L T R N D GFFI K +K P+
Sbjct: 531 FGQEGFT--------RFQARRFHPTLRSTRRFYPHTHNMD--GFFIAKFKKFSNSIPQ-- 578
Query: 321 IHPHLNDCIVIGP 333
PH + P
Sbjct: 579 --PHAGNSAAATP 589
>sp|A9R925|RSMB_YERPG Ribosomal RNA small subunit methyltransferase B OS=Yersinia pestis
bv. Antiqua (strain Angola) GN=rsmB PE=3 SV=2
Length = 429
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 102/186 (54%), Gaps = 29/186 (15%)
Query: 81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQT 140
LD Q G+++LD+CAAPG K THI L ++A+D + R+++++E +++LQL ++
Sbjct: 242 LDPQNGEQILDLCAAPGGKTTHI-LEAAPKAHVLAVDIDEQRLSRVKENLQRLQLQAV-V 299
Query: 141 HVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKI 197
V D +T + FDRILLDAPCS G + P +L D+ I
Sbjct: 300 RVGDGRAPDTWCG---------DQQFDRILLDAPCSATGVIRRHPDI----KWLRRDRDI 346
Query: 198 KSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPE 257
A +Q ++++A++ P LK G+LVY TCS+ EEN+ IA L RHPE
Sbjct: 347 SELAQLQSEIIEAIW-----------PKLKHGGVLVYATCSILPEENQQQIAAFLQRHPE 395
Query: 258 VELVQT 263
+L +T
Sbjct: 396 AQLTET 401
>sp|B1JJH6|RSMB_YERPY Ribosomal RNA small subunit methyltransferase B OS=Yersinia
pseudotuberculosis serotype O:3 (strain YPIII) GN=rsmB
PE=3 SV=1
Length = 429
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 102/186 (54%), Gaps = 29/186 (15%)
Query: 81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQT 140
LD Q G+++LD+CAAPG K THI L ++A+D + R+++++E +++LQL ++
Sbjct: 242 LDPQNGEQILDLCAAPGGKTTHI-LEAAPKAHVLAVDIDEQRLSRVKENLQRLQLQAV-V 299
Query: 141 HVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKI 197
V D +T + FDRILLDAPCS G + P +L D+ I
Sbjct: 300 RVGDGRAPDTWCG---------DQQFDRILLDAPCSATGVIRRHPDI----KWLRRDRDI 346
Query: 198 KSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPE 257
A +Q ++++A++ P LK G+LVY TCS+ EEN+ IA L RHPE
Sbjct: 347 SELAQLQSEIIEAIW-----------PKLKHGGVLVYATCSILPEENQQQIAAFLQRHPE 395
Query: 258 VELVQT 263
+L +T
Sbjct: 396 AQLTET 401
>sp|Q664V2|RSMB_YERPS Ribosomal RNA small subunit methyltransferase B OS=Yersinia
pseudotuberculosis serotype I (strain IP32953) GN=rsmB
PE=3 SV=1
Length = 429
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 102/186 (54%), Gaps = 29/186 (15%)
Query: 81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQT 140
LD Q G+++LD+CAAPG K THI L ++A+D + R+++++E +++LQL ++
Sbjct: 242 LDPQNGEQILDLCAAPGGKTTHI-LEAAPKAHVLAVDIDEQRLSRVKENLQRLQLQAV-V 299
Query: 141 HVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKI 197
V D +T + FDRILLDAPCS G + P +L D+ I
Sbjct: 300 RVGDGRAPDTWCG---------DQQFDRILLDAPCSATGVIRRHPDI----KWLRRDRDI 346
Query: 198 KSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPE 257
A +Q ++++A++ P LK G+LVY TCS+ EEN+ IA L RHPE
Sbjct: 347 SELAQLQSEIIEAIW-----------PKLKHGGVLVYATCSILPEENQQQIAAFLQRHPE 395
Query: 258 VELVQT 263
+L +T
Sbjct: 396 AQLTET 401
>sp|A4TH21|RSMB_YERPP Ribosomal RNA small subunit methyltransferase B OS=Yersinia pestis
(strain Pestoides F) GN=rsmB PE=3 SV=1
Length = 429
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 102/186 (54%), Gaps = 29/186 (15%)
Query: 81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQT 140
LD Q G+++LD+CAAPG K THI L ++A+D + R+++++E +++LQL ++
Sbjct: 242 LDPQNGEQILDLCAAPGGKTTHI-LEAAPKAHVLAVDIDEQRLSRVKENLQRLQLQAV-V 299
Query: 141 HVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKI 197
V D +T + FDRILLDAPCS G + P +L D+ I
Sbjct: 300 RVGDGRAPDTWCG---------DQQFDRILLDAPCSATGVIRRHPDI----KWLRRDRDI 346
Query: 198 KSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPE 257
A +Q ++++A++ P LK G+LVY TCS+ EEN+ IA L RHPE
Sbjct: 347 SELAQLQSEIIEAIW-----------PKLKHGGVLVYATCSILPEENQQQIAAFLQRHPE 395
Query: 258 VELVQT 263
+L +T
Sbjct: 396 AQLTET 401
>sp|Q1CCX4|RSMB_YERPN Ribosomal RNA small subunit methyltransferase B OS=Yersinia pestis
bv. Antiqua (strain Nepal516) GN=rsmB PE=3 SV=1
Length = 429
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 102/186 (54%), Gaps = 29/186 (15%)
Query: 81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQT 140
LD Q G+++LD+CAAPG K THI L ++A+D + R+++++E +++LQL ++
Sbjct: 242 LDPQNGEQILDLCAAPGGKTTHI-LEAAPKAHVLAVDIDEQRLSRVKENLQRLQLQAV-V 299
Query: 141 HVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKI 197
V D +T + FDRILLDAPCS G + P +L D+ I
Sbjct: 300 RVGDGRAPDTWCG---------DQQFDRILLDAPCSATGVIRRHPDI----KWLRRDRDI 346
Query: 198 KSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPE 257
A +Q ++++A++ P LK G+LVY TCS+ EEN+ IA L RHPE
Sbjct: 347 SELAQLQSEIIEAIW-----------PKLKHGGVLVYATCSILPEENQQQIAAFLQRHPE 395
Query: 258 VELVQT 263
+L +T
Sbjct: 396 AQLTET 401
>sp|Q8ZJ81|RSMB_YERPE Ribosomal RNA small subunit methyltransferase B OS=Yersinia pestis
GN=rsmB PE=3 SV=1
Length = 429
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 102/186 (54%), Gaps = 29/186 (15%)
Query: 81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQT 140
LD Q G+++LD+CAAPG K THI L ++A+D + R+++++E +++LQL ++
Sbjct: 242 LDPQNGEQILDLCAAPGGKTTHI-LEAAPKAHVLAVDIDEQRLSRVKENLQRLQLQAV-V 299
Query: 141 HVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKI 197
V D +T + FDRILLDAPCS G + P +L D+ I
Sbjct: 300 RVGDGRAPDTWCG---------DQQFDRILLDAPCSATGVIRRHPDI----KWLRRDRDI 346
Query: 198 KSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPE 257
A +Q ++++A++ P LK G+LVY TCS+ EEN+ IA L RHPE
Sbjct: 347 SELAQLQSEIIEAIW-----------PKLKHGGVLVYATCSILPEENQQQIAAFLQRHPE 395
Query: 258 VELVQT 263
+L +T
Sbjct: 396 AQLTET 401
>sp|B2K506|RSMB_YERPB Ribosomal RNA small subunit methyltransferase B OS=Yersinia
pseudotuberculosis serotype IB (strain PB1/+) GN=rsmB
PE=3 SV=1
Length = 429
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 102/186 (54%), Gaps = 29/186 (15%)
Query: 81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQT 140
LD Q G+++LD+CAAPG K THI L ++A+D + R+++++E +++LQL ++
Sbjct: 242 LDPQNGEQILDLCAAPGGKTTHI-LEAAPKAHVLAVDIDEQRLSRVKENLQRLQLQAV-V 299
Query: 141 HVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKI 197
V D +T + FDRILLDAPCS G + P +L D+ I
Sbjct: 300 RVGDGRAPDTWCG---------DQQFDRILLDAPCSATGVIRRHPDI----KWLRRDRDI 346
Query: 198 KSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPE 257
A +Q ++++A++ P LK G+LVY TCS+ EEN+ IA L RHPE
Sbjct: 347 SELAQLQSEIIEAIW-----------PKLKHGGVLVYATCSILPEENQQQIAAFLQRHPE 395
Query: 258 VELVQT 263
+L +T
Sbjct: 396 AQLTET 401
>sp|Q1C2X7|RSMB_YERPA Ribosomal RNA small subunit methyltransferase B OS=Yersinia pestis
bv. Antiqua (strain Antiqua) GN=rsmB PE=3 SV=1
Length = 429
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 102/186 (54%), Gaps = 29/186 (15%)
Query: 81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQT 140
LD Q G+++LD+CAAPG K THI L ++A+D + R+++++E +++LQL ++
Sbjct: 242 LDPQNGEQILDLCAAPGGKTTHI-LEAAPKAHVLAVDIDEQRLSRVKENLQRLQLQAV-V 299
Query: 141 HVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKI 197
V D +T + FDRILLDAPCS G + P +L D+ I
Sbjct: 300 RVGDGRAPDTWCG---------DQQFDRILLDAPCSATGVIRRHPDI----KWLRRDRDI 346
Query: 198 KSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPE 257
A +Q ++++A++ P LK G+LVY TCS+ EEN+ IA L RHPE
Sbjct: 347 SELAQLQSEIIEAIW-----------PKLKHGGVLVYATCSILPEENQQQIAAFLQRHPE 395
Query: 258 VELVQT 263
+L +T
Sbjct: 396 AQLTET 401
>sp|A7FNK4|RSMB_YERP3 Ribosomal RNA small subunit methyltransferase B OS=Yersinia
pseudotuberculosis serotype O:1b (strain IP 31758)
GN=rsmB PE=3 SV=1
Length = 429
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 102/186 (54%), Gaps = 29/186 (15%)
Query: 81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQT 140
LD Q G+++LD+CAAPG K THI L ++A+D + R+++++E +++LQL ++
Sbjct: 242 LDPQNGEQILDLCAAPGGKTTHI-LEAAPKAHVLAVDIDEQRLSRVKENLQRLQLQAV-V 299
Query: 141 HVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKI 197
V D +T + FDRILLDAPCS G + P +L D+ I
Sbjct: 300 RVGDGRAPDTWCG---------DQQFDRILLDAPCSATGVIRRHPDI----KWLRRDRDI 346
Query: 198 KSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPE 257
A +Q ++++A++ P LK G+LVY TCS+ EEN+ IA L RHPE
Sbjct: 347 SELAQLQSEIIEAIW-----------PKLKHGGVLVYATCSILPEENQQQIAAFLQRHPE 395
Query: 258 VELVQT 263
+L +T
Sbjct: 396 AQLTET 401
>sp|P46087|NOP2_HUMAN Putative ribosomal RNA methyltransferase NOP2 OS=Homo sapiens
GN=NOP2 PE=1 SV=2
Length = 812
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 95/294 (32%), Positives = 137/294 (46%), Gaps = 52/294 (17%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ S+ V DSS+ I P LAGHY L Q
Sbjct: 325 AQALINRGVNLDPLGKWSKTGLVVYDSSVPIGAT-PEYLAGHYMLQGASSMLPVMALAPQ 383
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDMC APG K +++A LM +TG ++A D + R+ + + +L +++ YD
Sbjct: 384 EHERILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYD 443
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANI 203
+ FDR+LLDAPCSG G + + N D+K I A++
Sbjct: 444 GRQFPKVVG-----------GFDRVLLDAPCSGTGV--ISKDPAVKTNKDEKDILRCAHL 490
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263
QK+LL + V+ G G LVYCTCS++VEENE V+ + L + V LV T
Sbjct: 491 QKELLLSAIDSVNATSKTG-------GYLVYCTCSITVEENEWVVDYALKKR-NVRLVPT 542
Query: 264 LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRK 311
G +G + +RF P L T R N D GFFI K +K
Sbjct: 543 GLDFGQEGFT--------RFRERRFHPSLRSTRRFYPHTHNMD--GFFIAKFKK 586
>sp|P40991|NOP2_YEAST Putative ribosomal RNA methyltransferase Nop2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NOP2 PE=1
SV=1
Length = 618
Score = 105 bits (261), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 132/296 (44%), Gaps = 55/296 (18%)
Query: 38 ALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQ 84
A ++ RGV ++ ++V DS + I P LAGHY LD
Sbjct: 286 AQTLVNRGVNLQPIGSWTKVGLQIFDSQVPIGAT-PEYLAGHYILQAASSFLPVIALDPH 344
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
+++LDM AAPG K T+I+ +M +TG + A D +K R L I +L ++ YD
Sbjct: 345 ENERILDMAAAPGGKTTYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNTIVCNYD 404
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANI- 203
+ FDRILLDAPCSG G + + + + K + I
Sbjct: 405 AREFPKVIG-----------GFDRILLDAPCSGTG----VIGKDQSVKVSRTEKDFIQIP 449
Query: 204 --QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
QK+LL + V G G++VY TCS++VEE+EAVI + L + P V+LV
Sbjct: 450 HLQKQLLLSAIDSVDCNSKHG-------GVIVYSTCSVAVEEDEAVIDYALRKRPNVKLV 502
Query: 262 QTLPQLGMKGLAHKDLEAEDQAVMQRFGPPL------IPTDRNTDTIGFFICKLRK 311
T +G EA ++F P + P N D GFF+ K +K
Sbjct: 503 DTGLAIGK--------EAFTSYRGKKFHPSVKLARRYYPHTYNVD--GFFVAKFQK 548
>sp|A1JRZ3|RSMB_YERE8 Ribosomal RNA small subunit methyltransferase B OS=Yersinia
enterocolitica serotype O:8 / biotype 1B (strain 8081)
GN=rsmB PE=3 SV=1
Length = 429
Score = 103 bits (256), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 107/201 (53%), Gaps = 31/201 (15%)
Query: 81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQT 140
LD Q G+++LD+CAAPG K THI L ++A+D + R+++++E +++L+L +
Sbjct: 242 LDPQDGEQILDLCAAPGGKTTHI-LEAAPKVHVLAVDIDEQRLSRVKENLQRLRLHA--- 297
Query: 141 HVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKI 197
R+ D + FDRILLDAPCS G + P +L D I
Sbjct: 298 ----DVRVGDGRTPD---EWCGDQQFDRILLDAPCSATGVIRRHPDI----KWLRRDSDI 346
Query: 198 KSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPE 257
A +Q ++++A++ P LKK G++VY TCS+ EEN+ IA L RH E
Sbjct: 347 AELAQLQSEIIEAIW-----------PKLKKGGVMVYATCSILPEENQQQIATFLQRHSE 395
Query: 258 VELVQ--TLPQLGMKGLAHKD 276
+LV+ T+ LG + L H +
Sbjct: 396 ADLVETGTVSALGRQNLPHPE 416
>sp|Q12MJ8|RSMF_SHEDO Ribosomal RNA small subunit methyltransferase F OS=Shewanella
denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)
GN=rsmF PE=3 SV=1
Length = 505
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/278 (30%), Positives = 124/278 (44%), Gaps = 38/278 (13%)
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLDM +APG+K T +A LMN+ G LIA + S RV L + ++ +S+ +D
Sbjct: 118 RVLDMASAPGSKTTQMAALMNNNGLLIANEYSASRVKVLHANVLRMGVSNCALTHFDGRV 177
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKL 207
+ Q E+FD +LLDAPC G G NA LD I + A+ QK L
Sbjct: 178 FG----------EYQYEAFDAVLLDAPCGGEGTVRKDQNALKEWQLDDVI-AIADTQKDL 226
Query: 208 LQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQL 267
++A + LK G LVY TC+LS EN+A+ +L R+PE ++L L
Sbjct: 227 IEAAFL-----------ALKPGGALVYSTCTLSQLENQAICQHLLSRYPEAVAFESLATL 275
Query: 268 GMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKKYGEAPEIYIHPHLND 327
G A E V + D+ GFF+ K+RK P I P
Sbjct: 276 -FDGAAKACTEEGFLHVWPQI----------YDSEGFFVAKMRKT-ASVPRIKSQPKAQK 323
Query: 328 CIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVF 365
P + + + +Q Q AL++ GA V+
Sbjct: 324 NFPFSPAPEKQIAALQDYIQ----QSFALSLPPGAQVY 357
>sp|P72943|RSMB_SYNY3 Ribosomal RNA small subunit methyltransferase B OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=rsmB PE=3 SV=1
Length = 446
Score = 99.8 bits (247), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 101/208 (48%), Gaps = 25/208 (12%)
Query: 51 TNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDT 110
T ++Q+P A +Q+ + L+ QP + + D+CAAPG K THIA LM D
Sbjct: 220 TGAITQLPGFA--EGWWTVQDASAQWVAQILNPQPEETIFDVCAAPGGKTTHIAELMGDQ 277
Query: 111 GTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRIL 170
G + A D+ R+ KL T ++L L+SI+ D T+ +++ DR L
Sbjct: 278 GQIYAGDRHGWRLQKLAVTQQRLGLTSIKIWEGDLTQPGVKPPVEL---------VDRAL 328
Query: 171 LDAPCSGFGQRPMFYNAN-SFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKD 229
LD PCSG G + N + + I + +Q+ LL+A+ PL+K
Sbjct: 329 LDVPCSGLGT--LHRNPDLRWRQTPATIATLLPLQQALLKAI-----------APLVKSG 375
Query: 230 GILVYCTCSLSVEENEAVIAWILHRHPE 257
G LVY TC+L+ ENEA I L H +
Sbjct: 376 GTLVYSTCTLNPAENEAQIERFLQDHED 403
>sp|A6TB06|RSMF_KLEP7 Ribosomal RNA small subunit methyltransferase F OS=Klebsiella
pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH
78578) GN=rsmF PE=3 SV=2
Length = 477
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/251 (31%), Positives = 122/251 (48%), Gaps = 37/251 (14%)
Query: 64 SSMGILQNLPSIL--AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKP 121
S + +Q S+L A + D + ++V+D+ AAPG+K T IA M + G ++A + S
Sbjct: 94 SGLFYIQEASSMLPVAALFADNRQPERVMDVAAAPGSKTTQIAARMGNAGGILANEFSAS 153
Query: 122 RVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQR 181
RV L I + +S++ +D + E+FD ILLDAPCSG G
Sbjct: 154 RVKVLHANISRCGISNVALTHFDGRVFGAA----------LPETFDAILLDAPCSGEGV- 202
Query: 182 PMFYNANSFLNLDKKIK-SYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLS 240
+ +A++ N + A Q++L+ + + L+ G LVY TC+L+
Sbjct: 203 -VRKDADALKNWSPESNLDIAATQRELIDSAFH-----------ALRPGGTLVYSTCTLN 250
Query: 241 VEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTD 300
EEN++VI W+L R+P+ V+ LP + A L AE + F P I D
Sbjct: 251 REENQSVIEWLLSRYPQA--VEILPLGELFPGAADALTAE--GFLHVF--PQI-----YD 299
Query: 301 TIGFFICKLRK 311
GFF+ +LRK
Sbjct: 300 CEGFFVARLRK 310
>sp|B5XQ35|RSMF_KLEP3 Ribosomal RNA small subunit methyltransferase F OS=Klebsiella
pneumoniae (strain 342) GN=rsmF PE=3 SV=1
Length = 477
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 121/251 (48%), Gaps = 37/251 (14%)
Query: 64 SSMGILQNLPSIL--AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKP 121
S + +Q S+L A + D ++V+D+ AAPG+K T IA M + G ++A + S
Sbjct: 94 SGLFYIQEASSMLPVAALFADNPQPERVMDVAAAPGSKTTQIAARMGNAGGILANEFSAS 153
Query: 122 RVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQR 181
RV L I + +S++ +D + E+FD ILLDAPCSG G
Sbjct: 154 RVKVLHANISRCGISNVALTHFDGRVFGAA----------LPEAFDAILLDAPCSGEGV- 202
Query: 182 PMFYNANSFLNLDKKIK-SYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLS 240
+ +A++ N + A Q++L+ + + L+ G LVY TC+L+
Sbjct: 203 -VRKDADALKNWSPESNLDIAATQRELIDSAFH-----------ALRPGGTLVYSTCTLN 250
Query: 241 VEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTD 300
EEN++V+ W+L R+P+ V+ LP + A L AE + F P I D
Sbjct: 251 REENQSVVQWLLSRYPQA--VEILPLGDLFSGAADALTAE--GFLHVF--PQI-----YD 299
Query: 301 TIGFFICKLRK 311
GFF+ +LRK
Sbjct: 300 CEGFFVARLRK 310
>sp|B1J0Q3|RSMF_ECOLC Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain ATCC 8739 / DSM 1576 / Crooks) GN=rsmF PE=3 SV=2
Length = 479
Score = 95.1 bits (235), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 78/251 (31%), Positives = 119/251 (47%), Gaps = 37/251 (14%)
Query: 64 SSMGILQNLPSIL--AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKP 121
S + +Q S+L A + D Q+V+D+ AAPG+K T IA MN+ G ++A + S
Sbjct: 94 SGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGAILANEFSAS 153
Query: 122 RVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQR 181
RV L I + +S++ +D + E FD ILLDAPCSG G
Sbjct: 154 RVKVLHANISRCGISNVALTHFDGRVFGVAV----------PEMFDAILLDAPCSGEGV- 202
Query: 182 PMFYNANSFLNLD-KKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLS 240
+ + ++ N + + A Q++L+ + + L+ G LVY TC+L+
Sbjct: 203 -VRKDPDALKNWSPESNQEIAATQRELIDSAFH-----------ALRPGGTLVYSTCTLN 250
Query: 241 VEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTD 300
EENEAV W+ +P+ V+ LP + A+K L E + F P I D
Sbjct: 251 REENEAVCMWLKETYPDA--VEFLPLGELFPAANKALTEE--GFLHVF--PQI-----YD 299
Query: 301 TIGFFICKLRK 311
GFF+ +LRK
Sbjct: 300 CEGFFVARLRK 310
>sp|A8A133|RSMF_ECOHS Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O9:H4 (strain HS) GN=rsmF PE=3 SV=2
Length = 479
Score = 95.1 bits (235), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 78/251 (31%), Positives = 119/251 (47%), Gaps = 37/251 (14%)
Query: 64 SSMGILQNLPSIL--AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKP 121
S + +Q S+L A + D Q+V+D+ AAPG+K T IA MN+ G ++A + S
Sbjct: 94 SGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGAILANEFSAS 153
Query: 122 RVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQR 181
RV L I + +S++ +D + E FD ILLDAPCSG G
Sbjct: 154 RVKVLHANISRCGISNVALTHFDGRVFGVAV----------PEMFDAILLDAPCSGEGV- 202
Query: 182 PMFYNANSFLNLD-KKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLS 240
+ + ++ N + + A Q++L+ + + L+ G LVY TC+L+
Sbjct: 203 -VRKDPDALKNWSPESNQEIAATQRELIDSAFH-----------ALRPGGTLVYSTCTLN 250
Query: 241 VEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTD 300
EENEAV W+ +P+ V+ LP + A+K L E + F P I D
Sbjct: 251 REENEAVCMWLKETYPDA--VEFLPLGELFPAANKALTEE--GFLHVF--PQI-----YD 299
Query: 301 TIGFFICKLRK 311
GFF+ +LRK
Sbjct: 300 CEGFFVARLRK 310
>sp|B7MVW5|RSMF_ECO81 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O81 (strain ED1a) GN=rsmF PE=3 SV=1
Length = 479
Score = 94.7 bits (234), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 78/251 (31%), Positives = 119/251 (47%), Gaps = 37/251 (14%)
Query: 64 SSMGILQNLPSIL--AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKP 121
S + +Q S+L A + D Q+V+D+ AAPG+K T IA MN+ G ++A + S
Sbjct: 94 SGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGAILANEFSAS 153
Query: 122 RVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQR 181
RV L I + +S++ +D + E FD ILLDAPCSG G
Sbjct: 154 RVKVLHANISRCGISNVALTHFDGRVFGAAV----------PEMFDAILLDAPCSGEGV- 202
Query: 182 PMFYNANSFLNLD-KKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLS 240
+ + ++ N + + A Q++L+ + + L+ G LVY TC+L+
Sbjct: 203 -VRKDPDALKNWSPESNQEIAATQRELIDSAFH-----------ALRPGGTLVYSTCTLN 250
Query: 241 VEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTD 300
EENEAV W+ +P+ V+ LP + A+K L E + F P I D
Sbjct: 251 REENEAVCLWLKETYPDA--VEFLPLGDLFPGANKALTEE--GFLHVF--PQI-----YD 299
Query: 301 TIGFFICKLRK 311
GFF+ +LRK
Sbjct: 300 CEGFFVARLRK 310
>sp|Q321Y0|RSMF_SHIBS Ribosomal RNA small subunit methyltransferase F OS=Shigella boydii
serotype 4 (strain Sb227) GN=rsmF PE=3 SV=2
Length = 479
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/251 (31%), Positives = 119/251 (47%), Gaps = 37/251 (14%)
Query: 64 SSMGILQNLPSIL--AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKP 121
S + +Q S+L A + D Q+V+D+ AAPG+K T IA MN+ G ++A + S
Sbjct: 94 SGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGAILANEFSAS 153
Query: 122 RVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQR 181
RV L I + +S++ +D + E FD ILLDAPCSG G
Sbjct: 154 RVKVLHANISRCGISNVALTHFDGRVFGAAV----------PEMFDAILLDAPCSGEGV- 202
Query: 182 PMFYNANSFLNLD-KKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLS 240
+ + ++ N + + A Q++L+ + + L+ G LVY TC+L+
Sbjct: 203 -VRKDPDALKNWSPESNQEIAATQRELIDSAFH-----------ALRPGGTLVYSTCTLN 250
Query: 241 VEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTD 300
EENEAV W+ +P+ V+ LP + A+K L E + F P I D
Sbjct: 251 QEENEAVCLWLKETYPDA--VEFLPLGDLFPGANKALTEE--GFLHVF--PQI-----YD 299
Query: 301 TIGFFICKLRK 311
GFF+ +LRK
Sbjct: 300 CEGFFVARLRK 310
>sp|B2U477|RSMF_SHIB3 Ribosomal RNA small subunit methyltransferase F OS=Shigella boydii
serotype 18 (strain CDC 3083-94 / BS512) GN=rsmF PE=3
SV=2
Length = 479
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/251 (31%), Positives = 119/251 (47%), Gaps = 37/251 (14%)
Query: 64 SSMGILQNLPSIL--AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKP 121
S + +Q S+L A + D Q+V+D+ AAPG+K T IA MN+ G ++A + S
Sbjct: 94 SGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGAILANEFSAS 153
Query: 122 RVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQR 181
RV L I + +S++ +D + E FD ILLDAPCSG G
Sbjct: 154 RVKVLHANISRCGISNVALTHFDGRVFGAAV----------PEMFDAILLDAPCSGEGV- 202
Query: 182 PMFYNANSFLNLD-KKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLS 240
+ + ++ N + + A Q++L+ + + L+ G LVY TC+L+
Sbjct: 203 -VRKDPDALKNWSPESNQEIAATQRELIDSAFH-----------ALRPGGTLVYSTCTLN 250
Query: 241 VEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTD 300
EENEAV W+ +P+ V+ LP + A+K L E + F P I D
Sbjct: 251 QEENEAVCLWLKETYPDA--VEFLPLGDLFPGANKALTEE--GFLHVF--PQI-----YD 299
Query: 301 TIGFFICKLRK 311
GFF+ +LRK
Sbjct: 300 CEGFFVARLRK 310
>sp|B1LD37|RSMF_ECOSM Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain SMS-3-5 / SECEC) GN=rsmF PE=3 SV=2
Length = 479
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/251 (31%), Positives = 119/251 (47%), Gaps = 37/251 (14%)
Query: 64 SSMGILQNLPSIL--AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKP 121
S + +Q S+L A + D Q+V+D+ AAPG+K T IA MN+ G ++A + S
Sbjct: 94 SGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGAILANEFSAS 153
Query: 122 RVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQR 181
RV L I + +S++ +D + E FD ILLDAPCSG G
Sbjct: 154 RVKVLHANISRCGISNVALTHFDGRVFGAAV----------PEMFDAILLDAPCSGEGV- 202
Query: 182 PMFYNANSFLNLD-KKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLS 240
+ + ++ N + + A Q++L+ + + L+ G LVY TC+L+
Sbjct: 203 -VRKDPDALKNWSPESNQEIAATQRELIDSAFH-----------ALRPGGTLVYSTCTLN 250
Query: 241 VEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTD 300
EENEAV W+ +P+ V+ LP + A+K L E + F P I D
Sbjct: 251 REENEAVCLWLKETYPDA--VEFLPLGDLFPGANKALTEE--GFLHVF--PQI-----YD 299
Query: 301 TIGFFICKLRK 311
GFF+ +LRK
Sbjct: 300 CEGFFVARLRK 310
>sp|B7USL2|RSMF_ECO27 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O127:H6 (strain E2348/69 / EPEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/251 (31%), Positives = 119/251 (47%), Gaps = 37/251 (14%)
Query: 64 SSMGILQNLPSIL--AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKP 121
S + +Q S+L A + D Q+V+D+ AAPG+K T IA MN+ G ++A + S
Sbjct: 94 SGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGAILANEFSAS 153
Query: 122 RVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQR 181
RV L I + +S++ +D + E FD ILLDAPCSG G
Sbjct: 154 RVKVLHANISRCGISNVALTHFDGRVFGAAV----------PEMFDAILLDAPCSGEGV- 202
Query: 182 PMFYNANSFLNLD-KKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLS 240
+ + ++ N + + A Q++L+ + + L+ G LVY TC+L+
Sbjct: 203 -VRKDPDALKNWSPESNQEIAATQRELIDSAFH-----------ALRPGGTLVYSTCTLN 250
Query: 241 VEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTD 300
EENEAV W+ +P+ V+ LP + A+K L E + F P I D
Sbjct: 251 REENEAVCLWLKETYPDA--VEFLPLGDLFPGANKALTEE--GFLHVF--PQI-----YD 299
Query: 301 TIGFFICKLRK 311
GFF+ +LRK
Sbjct: 300 CEGFFVARLRK 310
>sp|B6IBR3|RSMF_ECOSE Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain SE11) GN=rsmF PE=3 SV=2
Length = 479
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/251 (31%), Positives = 119/251 (47%), Gaps = 37/251 (14%)
Query: 64 SSMGILQNLPSIL--AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKP 121
S + +Q S+L A + D Q+V+D+ AAPG+K T IA MN+ G ++A + S
Sbjct: 94 SGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSKTTQIAARMNNEGAILANEFSAS 153
Query: 122 RVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQR 181
RV L I + +S++ +D + E FD ILLDAPCSG G
Sbjct: 154 RVKVLHANISRCGISNVALTHFDGRVFGAAV----------PEMFDAILLDAPCSGEGV- 202
Query: 182 PMFYNANSFLNLD-KKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLS 240
+ + ++ N + + A Q++L+ + + L+ G LVY TC+L+
Sbjct: 203 -VRKDPDALKNWSPESNQEIAATQRELIDSAFH-----------ALRPGGTLVYSTCTLN 250
Query: 241 VEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTD 300
EENEAV W+ +P+ V+ LP + A+K L E + F P I D
Sbjct: 251 QEENEAVCLWLKETYPDA--VEFLPLGDLFPGANKALTEE--GFLHVF--PQI-----YD 299
Query: 301 TIGFFICKLRK 311
GFF+ +LRK
Sbjct: 300 CEGFFVARLRK 310
>sp|B7M2B1|RSMF_ECO8A Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O8 (strain IAI1) GN=rsmF PE=3 SV=1
Length = 479
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/251 (31%), Positives = 119/251 (47%), Gaps = 37/251 (14%)
Query: 64 SSMGILQNLPSIL--AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKP 121
S + +Q S+L A + D Q+V+D+ AAPG+K T IA MN+ G ++A + S
Sbjct: 94 SGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSKTTQIAARMNNEGAILANEFSAS 153
Query: 122 RVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQR 181
RV L I + +S++ +D + E FD ILLDAPCSG G
Sbjct: 154 RVKVLHANISRCGISNVALTHFDGRVFGAAV----------PEMFDAILLDAPCSGEGV- 202
Query: 182 PMFYNANSFLNLD-KKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLS 240
+ + ++ N + + A Q++L+ + + L+ G LVY TC+L+
Sbjct: 203 -VRKDPDALKNWSPESNQEIAATQRELIDSAFH-----------ALRPGGTLVYSTCTLN 250
Query: 241 VEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTD 300
EENEAV W+ +P+ V+ LP + A+K L E + F P I D
Sbjct: 251 QEENEAVCLWLKETYPDA--VEFLPLGDLFPGANKALTEE--GFLHVF--PQI-----YD 299
Query: 301 TIGFFICKLRK 311
GFF+ +LRK
Sbjct: 300 CEGFFVARLRK 310
>sp|B7L7N7|RSMF_ECO55 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain 55989 / EAEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/251 (31%), Positives = 119/251 (47%), Gaps = 37/251 (14%)
Query: 64 SSMGILQNLPSIL--AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKP 121
S + +Q S+L A + D Q+V+D+ AAPG+K T IA MN+ G ++A + S
Sbjct: 94 SGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSKTTQIAARMNNEGAILANEFSAS 153
Query: 122 RVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQR 181
RV L I + +S++ +D + E FD ILLDAPCSG G
Sbjct: 154 RVKVLHANISRCGISNVALTHFDGRVFGAAV----------PEMFDAILLDAPCSGEGV- 202
Query: 182 PMFYNANSFLNLD-KKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLS 240
+ + ++ N + + A Q++L+ + + L+ G LVY TC+L+
Sbjct: 203 -VRKDPDALKNWSPESNQEIAATQRELIDSAFH-----------ALRPGGTLVYSTCTLN 250
Query: 241 VEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTD 300
EENEAV W+ +P+ V+ LP + A+K L E + F P I D
Sbjct: 251 QEENEAVCLWLKETYPDA--VEFLPLGDLFPGANKALTEE--GFLHVF--PQI-----YD 299
Query: 301 TIGFFICKLRK 311
GFF+ +LRK
Sbjct: 300 CEGFFVARLRK 310
>sp|A7ZMV8|RSMF_ECO24 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O139:H28 (strain E24377A / ETEC) GN=rsmF PE=3 SV=2
Length = 479
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/251 (31%), Positives = 119/251 (47%), Gaps = 37/251 (14%)
Query: 64 SSMGILQNLPSIL--AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKP 121
S + +Q S+L A + D Q+V+D+ AAPG+K T IA MN+ G ++A + S
Sbjct: 94 SGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSKTTQIAARMNNEGAILANEFSAS 153
Query: 122 RVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQR 181
RV L I + +S++ +D + E FD ILLDAPCSG G
Sbjct: 154 RVKVLHANISRCGISNVALTHFDGRVFGAAV----------PEMFDAILLDAPCSGEGV- 202
Query: 182 PMFYNANSFLNLD-KKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLS 240
+ + ++ N + + A Q++L+ + + L+ G LVY TC+L+
Sbjct: 203 -VRKDPDALKNWSPESNQEIAATQRELIDSAFH-----------ALRPGGTLVYSTCTLN 250
Query: 241 VEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTD 300
EENEAV W+ +P+ V+ LP + A+K L E + F P I D
Sbjct: 251 QEENEAVCLWLKETYPDA--VEFLPLGDLFPGANKALTEE--GFLHVF--PQI-----YD 299
Query: 301 TIGFFICKLRK 311
GFF+ +LRK
Sbjct: 300 CEGFFVARLRK 310
>sp|B7NS84|RSMF_ECO7I Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O7:K1 (strain IAI39 / ExPEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/251 (31%), Positives = 119/251 (47%), Gaps = 37/251 (14%)
Query: 64 SSMGILQNLPSIL--AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKP 121
S + +Q S+L A + D Q+V+D+ AAPG+K T IA MN+ G ++A + S
Sbjct: 94 SGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGAILANEFSAS 153
Query: 122 RVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQR 181
RV L I + +S++ +D + E FD ILLDAPCSG G
Sbjct: 154 RVKVLHANISRCGISNVALTHFDGRVFGAA----------LPEMFDAILLDAPCSGEGV- 202
Query: 182 PMFYNANSFLNLD-KKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLS 240
+ + ++ N + + A Q++L+ + + L+ G LVY TC+L+
Sbjct: 203 -VRKDPDALKNWSPESNQEIAATQRELIDSAFH-----------ALRPGGTLVYSTCTLN 250
Query: 241 VEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTD 300
EENEAV W+ +P+ V+ LP + A+K L E + F P I D
Sbjct: 251 REENEAVCLWLKETYPDA--VEFLPLGDLFPGANKALTEE--GFLHVF--PQI-----YD 299
Query: 301 TIGFFICKLRK 311
GFF+ +LRK
Sbjct: 300 CEGFFVARLRK 310
>sp|Q32F19|RSMF_SHIDS Ribosomal RNA small subunit methyltransferase F OS=Shigella
dysenteriae serotype 1 (strain Sd197) GN=rsmF PE=3 SV=2
Length = 479
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/251 (31%), Positives = 119/251 (47%), Gaps = 37/251 (14%)
Query: 64 SSMGILQNLPSIL--AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKP 121
S + +Q S+L A + D Q+V+D+ AAPG+K T IA MN+ GT++A + S
Sbjct: 94 SGLFYIQEASSMLPVAALFADGNAPQRVMDIAAAPGSKTTQIAARMNNEGTILANEFSAS 153
Query: 122 RVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQR 181
RV L I + +S++ +D + E FD ILLDAPCSG G
Sbjct: 154 RVKVLHANISRCGISNVALTHFDGRVFGAAV----------PEMFDAILLDAPCSGEGV- 202
Query: 182 PMFYNANSFLNLD-KKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLS 240
+ + ++ N + + A Q++L+ + + L+ G LVY TC+L+
Sbjct: 203 -VRKDPDALKNWSPESNQEIAATQRELIDSAFH-----------ALRLGGTLVYSTCTLN 250
Query: 241 VEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTD 300
EENEAV W+ +P+ V+ LP + +K L E + F P I D
Sbjct: 251 REENEAVCLWLKETYPDA--VEFLPLGDLFPGTNKALTEE--GFLHVF--PQI-----YD 299
Query: 301 TIGFFICKLRK 311
GFF+ +LRK
Sbjct: 300 CEGFFVARLRK 310
>sp|P45679|RSMB_COXBU Ribosomal RNA small subunit methyltransferase B OS=Coxiella
burnetii (strain RSA 493 / Nine Mile phase I) GN=rsmB
PE=3 SV=1
Length = 430
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 115/243 (47%), Gaps = 31/243 (12%)
Query: 33 SIYCYALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLDM 92
+I LD L + +E + Q+P + +Q+ A + L ++ Q VLD
Sbjct: 188 NISAKPLDFLPAAIQLEKPCSVHQLP--GFNEGYCYIQDAAGQFAAYLLKLENNQTVLDA 245
Query: 93 CAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL--SSIQTHVYDSTRINT 150
CAAPG+K +HI + TL+A+D +K R+ +++E I +L L +Q + D ++I+
Sbjct: 246 CAAPGSKTSHILEVNPHLKTLVAIDNNKQRLNRIKENITRLGLRQEHLQCLLADVSQIDQ 305
Query: 151 SSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYANIQKKL 207
S E FDRILLDAPCS G + P L I Y + +L
Sbjct: 306 WS---------SGELFDRILLDAPCSATGVIRRHPDI----KLLRQPGDISQYHQKKLQL 352
Query: 208 LQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQL 267
L A++ +LK G L+Y TCS+ +ENE VI L H +VEL T
Sbjct: 353 LNALW-----------TVLKAGGFLLYSTCSVLPDENEKVIEEFLSTHDKVELSPTNVHG 401
Query: 268 GMK 270
G++
Sbjct: 402 GLQ 404
>sp|B5YQX9|RSMF_ECO5E Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O157:H7 (strain EC4115 / EHEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 119/251 (47%), Gaps = 37/251 (14%)
Query: 64 SSMGILQNLPSIL--AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKP 121
S + +Q S+L A + D Q+V+D+ AAPG+K T IA MN+ G ++A + S
Sbjct: 94 SGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGAILANEFSAS 153
Query: 122 RVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQR 181
RV L I + +S++ +D + E FD ILLDAPCSG G
Sbjct: 154 RVKVLHANISRCGISNVALTHFDGRVFGAA----------LPEMFDAILLDAPCSGEGV- 202
Query: 182 PMFYNANSFLNLD-KKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLS 240
+ + ++ N + + A Q++L+ + + L+ G LVY TC+L+
Sbjct: 203 -VRKDPDALKNWSPESNQEIAATQRELIDSAFH-----------ALRSGGTLVYSTCTLN 250
Query: 241 VEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTD 300
EENE+V W+ +P+ V+ LP + A+K L E + F P I D
Sbjct: 251 REENESVCLWLKETYPDA--VEFLPLGDLFPGANKALTEE--GFLHVF--PQI-----YD 299
Query: 301 TIGFFICKLRK 311
GFF+ +LRK
Sbjct: 300 CEGFFVARLRK 310
>sp|Q8XCL9|RSMF_ECO57 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O157:H7 GN=rsmF PE=3 SV=2
Length = 479
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 119/251 (47%), Gaps = 37/251 (14%)
Query: 64 SSMGILQNLPSIL--AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKP 121
S + +Q S+L A + D Q+V+D+ AAPG+K T IA MN+ G ++A + S
Sbjct: 94 SGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGAILANEFSAS 153
Query: 122 RVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQR 181
RV L I + +S++ +D + E FD ILLDAPCSG G
Sbjct: 154 RVKVLHANISRCGISNVALTHFDGRVFGAA----------LPEMFDAILLDAPCSGEGV- 202
Query: 182 PMFYNANSFLNLD-KKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLS 240
+ + ++ N + + A Q++L+ + + L+ G LVY TC+L+
Sbjct: 203 -VRKDPDALKNWSPESNQEIAATQRELIDSAFH-----------ALRSGGTLVYSTCTLN 250
Query: 241 VEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTD 300
EENE+V W+ +P+ V+ LP + A+K L E + F P I D
Sbjct: 251 REENESVCLWLKETYPDA--VEFLPLGDLFPGANKALTEE--GFLHVF--PQI-----YD 299
Query: 301 TIGFFICKLRK 311
GFF+ +LRK
Sbjct: 300 CEGFFVARLRK 310
>sp|A8AFL6|RSMF_CITK8 Ribosomal RNA small subunit methyltransferase F OS=Citrobacter
koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
GN=rsmF PE=3 SV=1
Length = 479
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/254 (31%), Positives = 120/254 (47%), Gaps = 43/254 (16%)
Query: 64 SSMGILQNLPSIL--AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKP 121
S + +Q S+L A + + ++++D+ AAPG+K T IA MN+ G ++A + S
Sbjct: 94 SGLFYIQEASSMLPVAALFAEGNTPERIMDVAAAPGSKTTQIAARMNNQGAILANEFSAS 153
Query: 122 RVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG-- 179
RV L I + +S++ +D + E+FD ILLDAPCSG G
Sbjct: 154 RVKVLHANISRCGISNVALTHFDGRVFGAA----------LPETFDAILLDAPCSGEGVV 203
Query: 180 -QRP-MFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC 237
+ P N + NLD A Q++L+ + + L+ G LVY TC
Sbjct: 204 RKDPDALKNWSVESNLD-----IAATQRELIDSAFH-----------ALRPGGTLVYSTC 247
Query: 238 SLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR 297
+L+ EENE+V W+ +PE V+ LP + A + L AE + F P I
Sbjct: 248 TLNREENESVCLWLKETYPEA--VEFLPLGDLFPGAERALTAE--GFLHVF--PQI---- 297
Query: 298 NTDTIGFFICKLRK 311
D GFF+ +LRK
Sbjct: 298 -YDCEGFFVARLRK 310
>sp|P76273|RSMF_ECOLI Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain K12) GN=rsmF PE=1 SV=2
Length = 479
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 119/251 (47%), Gaps = 37/251 (14%)
Query: 64 SSMGILQNLPSIL--AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKP 121
S + +Q S+L A + D Q+V+D+ AAPG+K T I+ MN+ G ++A + S
Sbjct: 94 SGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSAS 153
Query: 122 RVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQR 181
RV L I + +S++ +D + E FD ILLDAPCSG G
Sbjct: 154 RVKVLHANISRCGISNVALTHFDGRVFGAAV----------PEMFDAILLDAPCSGEGV- 202
Query: 182 PMFYNANSFLNLD-KKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLS 240
+ + ++ N + + A Q++L+ + + L+ G LVY TC+L+
Sbjct: 203 -VRKDPDALKNWSPESNQEIAATQRELIDSAFH-----------ALRPGGTLVYSTCTLN 250
Query: 241 VEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTD 300
EENEAV W+ +P+ V+ LP + A+K L E + F P I D
Sbjct: 251 QEENEAVCLWLKETYPDA--VEFLPLGDLFPGANKALTEE--GFLHVF--PQI-----YD 299
Query: 301 TIGFFICKLRK 311
GFF+ +LRK
Sbjct: 300 CEGFFVARLRK 310
>sp|B1XHA3|RSMF_ECODH Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain K12 / DH10B) GN=rsmF PE=3 SV=1
Length = 479
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 119/251 (47%), Gaps = 37/251 (14%)
Query: 64 SSMGILQNLPSIL--AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKP 121
S + +Q S+L A + D Q+V+D+ AAPG+K T I+ MN+ G ++A + S
Sbjct: 94 SGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSAS 153
Query: 122 RVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQR 181
RV L I + +S++ +D + E FD ILLDAPCSG G
Sbjct: 154 RVKVLHANISRCGISNVALTHFDGRVFGAAV----------PEMFDAILLDAPCSGEGV- 202
Query: 182 PMFYNANSFLNLD-KKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLS 240
+ + ++ N + + A Q++L+ + + L+ G LVY TC+L+
Sbjct: 203 -VRKDPDALKNWSPESNQEIAATQRELIDSAFH-----------ALRPGGTLVYSTCTLN 250
Query: 241 VEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTD 300
EENEAV W+ +P+ V+ LP + A+K L E + F P I D
Sbjct: 251 QEENEAVCLWLKETYPDA--VEFLPLGDLFPGANKALTEE--GFLHVF--PQI-----YD 299
Query: 301 TIGFFICKLRK 311
GFF+ +LRK
Sbjct: 300 CEGFFVARLRK 310
>sp|C4ZZJ2|RSMF_ECOBW Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain K12 / MC4100 / BW2952) GN=rsmF PE=3 SV=1
Length = 479
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 119/251 (47%), Gaps = 37/251 (14%)
Query: 64 SSMGILQNLPSIL--AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKP 121
S + +Q S+L A + D Q+V+D+ AAPG+K T I+ MN+ G ++A + S
Sbjct: 94 SGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSAS 153
Query: 122 RVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQR 181
RV L I + +S++ +D + E FD ILLDAPCSG G
Sbjct: 154 RVKVLHANISRCGISNVALTHFDGRVFGAAV----------PEMFDAILLDAPCSGEGV- 202
Query: 182 PMFYNANSFLNLD-KKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLS 240
+ + ++ N + + A Q++L+ + + L+ G LVY TC+L+
Sbjct: 203 -VRKDPDALKNWSPESNQEIAATQRELIDSAFH-----------ALRPGGTLVYSTCTLN 250
Query: 241 VEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTD 300
EENEAV W+ +P+ V+ LP + A+K L E + F P I D
Sbjct: 251 QEENEAVCLWLKETYPDA--VEFLPLGDLFPGANKALTEE--GFLHVF--PQI-----YD 299
Query: 301 TIGFFICKLRK 311
GFF+ +LRK
Sbjct: 300 CEGFFVARLRK 310
>sp|Q3Z2H4|RSMF_SHISS Ribosomal RNA small subunit methyltransferase F OS=Shigella sonnei
(strain Ss046) GN=rsmF PE=3 SV=2
Length = 479
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 119/251 (47%), Gaps = 37/251 (14%)
Query: 64 SSMGILQNLPSIL--AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKP 121
S + +Q S+L A + D Q+V+D+ AAPG+K T I+ MN+ G ++A + S
Sbjct: 94 SGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSAS 153
Query: 122 RVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQR 181
RV L I + +S++ +D + E FD ILLDAPCSG G
Sbjct: 154 RVKVLHANISRCGISNVALTHFDGRVFGAAV----------PEMFDAILLDAPCSGEGV- 202
Query: 182 PMFYNANSFLNLD-KKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLS 240
+ + ++ N + + A Q++L+ + + L+ G LVY TC+L+
Sbjct: 203 -VRKDPDALKNWSPESNQEIAATQRELIDSAFH-----------ALRPGGTLVYSTCTLN 250
Query: 241 VEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTD 300
EENEAV W+ +P+ V+ LP + A+K L E + F P I D
Sbjct: 251 QEENEAVCLWLKETYPDA--VEFLPLGDLFPGANKALTEE--GFLHVF--PQI-----YD 299
Query: 301 TIGFFICKLRK 311
GFF+ +LRK
Sbjct: 300 CEGFFVARLRK 310
>sp|Q0TGZ7|RSMF_ECOL5 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O6:K15:H31 (strain 536 / UPEC) GN=rsmF PE=3 SV=2
Length = 479
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 119/251 (47%), Gaps = 37/251 (14%)
Query: 64 SSMGILQNLPSIL--AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKP 121
S + +Q S+L A + + Q+V+D+ AAPG+K T IA MN+ G ++A + S
Sbjct: 94 SGLFYIQEASSMLPVAALFANGNAPQRVMDVAAAPGSKTTQIAARMNNEGAILANEFSAS 153
Query: 122 RVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQR 181
RV L I + +S++ +D + E FD ILLDAPCSG G
Sbjct: 154 RVKVLHANISRCGISNVALTHFDGRVFGAAV----------PEMFDAILLDAPCSGEGV- 202
Query: 182 PMFYNANSFLNLD-KKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLS 240
+ + ++ N + + A Q++L+ + + L+ G LVY TC+L+
Sbjct: 203 -VRKDPDALKNWSPESNQEIAATQRELIDSAFH-----------ALRPGGTLVYSTCTLN 250
Query: 241 VEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTD 300
EENEAV W+ +P+ V+ LP + A+K L E + F P I D
Sbjct: 251 REENEAVCLWLKETYPDA--VEFLPLGDLFPGANKALTEE--GFLHVF--PQI-----YD 299
Query: 301 TIGFFICKLRK 311
GFF+ +LRK
Sbjct: 300 CEGFFVARLRK 310
>sp|B7LPL0|RSMF_ESCF3 Ribosomal RNA small subunit methyltransferase F OS=Escherichia
fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73)
GN=rsmF PE=3 SV=1
Length = 479
Score = 91.7 bits (226), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 117/251 (46%), Gaps = 37/251 (14%)
Query: 64 SSMGILQNLPSIL--AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKP 121
S + +Q S+L A + D Q+V+D+ AAPG+K T IA MN+ G ++A + S
Sbjct: 94 SGLFYIQEASSMLPVAALFADGNSPQRVMDVAAAPGSKTTQIAARMNNEGAILANEFSAS 153
Query: 122 RVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQR 181
RV L I + + ++ +D + E FD ILLDAPCSG G
Sbjct: 154 RVKVLHANISRCGIRNVALTHFDGRVFGAA----------LPEMFDAILLDAPCSGEGV- 202
Query: 182 PMFYNANSFLNLD-KKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLS 240
+ + ++ N + + A Q++L+ + + L+ G LVY TC+L+
Sbjct: 203 -VRKDPDALKNWSPESNQEIAATQRELIDSAFH-----------ALRPGGTLVYSTCTLN 250
Query: 241 VEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTD 300
EENEAV W+ +P+ V+ LP + A K L E + F P I D
Sbjct: 251 REENEAVCLWLKETYPDA--VEFLPLGDLFPGADKALTEE--GFLHVF--PQI-----YD 299
Query: 301 TIGFFICKLRK 311
GFF+ +LRK
Sbjct: 300 CEGFFVARLRK 310
>sp|Q6D000|RSMB_ERWCT Ribosomal RNA small subunit methyltransferase B OS=Erwinia
carotovora subsp. atroseptica (strain SCRI 1043 / ATCC
BAA-672) GN=rsmB PE=3 SV=1
Length = 429
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 105/205 (51%), Gaps = 35/205 (17%)
Query: 79 HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSI 138
++LD Q G+++LD+CAAPG K THI L ++A+D + R+ +++E + +LQ+ +
Sbjct: 240 YWLDPQDGEQILDLCAAPGGKTTHI-LEAAPKSHVLAVDVDETRLGRVKENLLRLQMHA- 297
Query: 139 QTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDK 195
+ D ++ + + FDRILLDAPCS G + P +L D+
Sbjct: 298 EVKQGDGRYPDSWCEARV---------FDRILLDAPCSATGVIRRHPDI----KWLRRDR 344
Query: 196 KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRH 255
I+ +QK++L A++ P LK G +VY TCS+ +EN + L RH
Sbjct: 345 DIEELVALQKEILDAIW-----------PHLKTGGTMVYATCSILPQENTQQVTGFLSRH 393
Query: 256 PEVELVQT----LPQLGMKGLAHKD 276
+ LV T +P G++ L H D
Sbjct: 394 ADAALVDTGTSEIP--GIQILPHAD 416
>sp|B7NBI3|RSMF_ECOLU Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O17:K52:H18 (strain UMN026 / ExPEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 117/251 (46%), Gaps = 37/251 (14%)
Query: 64 SSMGILQNLPSIL--AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKP 121
S + +Q S+L A + D Q+V+D+ AAPG+K T IA MN+ G ++A + S
Sbjct: 94 SGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGAILANEFSAS 153
Query: 122 RVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQR 181
RV L I + + ++ +D + E FD ILLDAPCSG G
Sbjct: 154 RVKVLHANISRCGIRNVALTHFDGRVFGAA----------LPEMFDAILLDAPCSGEGV- 202
Query: 182 PMFYNANSFLNLD-KKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLS 240
+ + ++ N + + A Q++L+ + + L G LVY TC+L+
Sbjct: 203 -VRKDPDALKNWSPESNQEIAATQRELIDSAFH-----------ALCPGGTLVYSTCTLN 250
Query: 241 VEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTD 300
EENEAV W+ +P+ V+ LP + A+K L E + F P I D
Sbjct: 251 QEENEAVCRWLKETYPDA--VEFLPLGDLFPGANKALTEE--GFLHVF--PQI-----YD 299
Query: 301 TIGFFICKLRK 311
GFF+ +LRK
Sbjct: 300 CEGFFVARLRK 310
>sp|A0KKI5|RSMF_AERHH Ribosomal RNA small subunit methyltransferase F OS=Aeromonas
hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB
9240) GN=rsmF PE=3 SV=2
Length = 475
Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 109/226 (48%), Gaps = 35/226 (15%)
Query: 89 VLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRI 148
+LD AAPG+K T IA LMN+ G L+A + S R+ L +++ ++++ +D+
Sbjct: 121 LLDAAAAPGSKTTQIAALMNNQGMLVANEYSSSRLKVLSANLQRCGVTNVGMTHFDAKVF 180
Query: 149 NTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLD-KKIKSYANIQKKL 207
+ E+FD ILLDAPCSG G + + ++ N + I A +Q+ L
Sbjct: 181 G----------QWLPETFDAILLDAPCSGEGS--VRKDEDALRNWSIESIDEIAAVQQGL 228
Query: 208 LQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQL 267
L++ + LK G+LVY TC+LS++EN+AV +L + +L L
Sbjct: 229 LESAFH-----------ALKPGGVLVYSTCTLSLQENQAVCQSLLDKFGAAFSFDSLADL 277
Query: 268 GMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKKY 313
A +QA + P + D+ GFF+ +LRK Y
Sbjct: 278 ---------FPAAEQACTPEGYLHVWP--QIFDSEGFFVARLRKHY 312
>sp|A7MKH5|RSMF_CROS8 Ribosomal RNA small subunit methyltransferase F OS=Cronobacter
sakazakii (strain ATCC BAA-894) GN=rsmF PE=3 SV=2
Length = 480
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 109/243 (44%), Gaps = 35/243 (14%)
Query: 76 LAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL 135
+A + D +V+D+ AAPG+K T IA LM + G ++A + S RV L I + +
Sbjct: 109 VAALFADGNTPARVMDVAAAPGSKTTQIAALMQNQGFILANEYSASRVKVLHANISRCGI 168
Query: 136 SSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLD- 194
++ +D + E FD ILLDAPCSG G + + ++ N
Sbjct: 169 HNVGLTHFDGRVFGAA----------LPEQFDAILLDAPCSGEGV--VRKDPDALRNWSP 216
Query: 195 KKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHR 254
+ + A Q++L+ + + L G LVY TC+L+ EEN+ + W+L R
Sbjct: 217 QSDQEIAATQRELIDSAFH-----------ALAPGGTLVYSTCTLNREENQETVRWLLAR 265
Query: 255 HPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKKYG 314
+P+ V +L L D ++ + F P I D GFF+ +LRK
Sbjct: 266 YPQAVEVLSLEAL----FPGADAALTEEGFLHVF--PQI-----YDCEGFFVARLRKTAS 314
Query: 315 EAP 317
P
Sbjct: 315 VEP 317
>sp|Q8FGS9|RSMF_ECOL6 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rsmF PE=3
SV=2
Length = 479
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 76/251 (30%), Positives = 118/251 (47%), Gaps = 37/251 (14%)
Query: 64 SSMGILQNLPSIL--AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKP 121
S + +Q S+L A + D Q+V+D+ AAPG+K T IA MN+ G ++A + S
Sbjct: 94 SGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGAILANEFSAS 153
Query: 122 RVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQR 181
RV L I + +S++ +D + E FD ILLDAPCSG G
Sbjct: 154 RVKVLHANISRCGISNVALTHFDGRVFGAAV----------PEMFDAILLDAPCSGEGV- 202
Query: 182 PMFYNANSFLNLD-KKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLS 240
+ + ++ N + + A Q++L+ + + L+ G LVY TC+L+
Sbjct: 203 -VRKDPDALKNWSPESNQEIAATQRELIDSAFH-----------ALRPGGTLVYSTCTLN 250
Query: 241 VEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTD 300
EENEAV W+ + + V+ LP + A+K L + + F P I D
Sbjct: 251 REENEAVCLWLKETYHDA--VEFLPLGDLFPGANKAL--TEDGFLHVF--PQI-----YD 299
Query: 301 TIGFFICKLRK 311
GFF+ +LRK
Sbjct: 300 CEGFFVARLRK 310
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 144,875,012
Number of Sequences: 539616
Number of extensions: 6014138
Number of successful extensions: 16233
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 15553
Number of HSP's gapped (non-prelim): 311
length of query: 397
length of database: 191,569,459
effective HSP length: 120
effective length of query: 277
effective length of database: 126,815,539
effective search space: 35127904303
effective search space used: 35127904303
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)