Query psy17793
Match_columns 397
No_of_seqs 406 out of 2991
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 23:15:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17793.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17793hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0144 Sun tRNA and rRNA cyto 100.0 8.4E-50 1.8E-54 398.6 25.0 234 44-312 117-354 (355)
2 KOG1122|consensus 100.0 1.6E-50 3.4E-55 396.9 16.6 239 45-313 200-442 (460)
3 PRK11933 yebU rRNA (cytosine-C 100.0 2.3E-47 5E-52 391.5 22.2 215 62-313 88-308 (470)
4 PF01189 Nol1_Nop2_Fmu: NOL1/N 100.0 1.3E-47 2.9E-52 372.0 16.6 215 62-310 62-283 (283)
5 TIGR00446 nop2p NOL1/NOP2/sun 100.0 2.3E-44 5.1E-49 346.4 23.4 214 62-311 48-264 (264)
6 PRK14903 16S rRNA methyltransf 100.0 2.6E-41 5.6E-46 345.7 24.7 214 62-312 214-430 (431)
7 PRK14901 16S rRNA methyltransf 100.0 9.4E-41 2E-45 342.4 22.8 202 62-312 229-433 (434)
8 TIGR00563 rsmB ribosomal RNA s 100.0 8.2E-40 1.8E-44 334.7 24.8 207 62-312 215-426 (426)
9 PRK14904 16S rRNA methyltransf 100.0 8.4E-39 1.8E-43 328.9 24.5 214 62-313 227-444 (445)
10 PRK14902 16S rRNA methyltransf 100.0 5E-38 1.1E-42 323.2 25.1 214 62-312 227-443 (444)
11 PRK10901 16S rRNA methyltransf 100.0 2E-37 4.3E-42 317.2 25.3 204 62-312 221-427 (427)
12 KOG2198|consensus 100.0 7.6E-34 1.7E-38 277.0 12.1 195 53-264 120-325 (375)
13 KOG2360|consensus 100.0 2E-32 4.3E-37 267.0 14.8 216 62-312 190-413 (413)
14 PRK15128 23S rRNA m(5)C1962 me 99.8 7.6E-18 1.7E-22 170.7 17.5 183 43-262 180-368 (396)
15 COG1092 Predicted SAM-dependen 99.8 5.7E-18 1.2E-22 170.1 15.9 201 23-262 159-365 (393)
16 PF10672 Methyltrans_SAM: S-ad 99.7 3.2E-17 6.9E-22 158.9 11.1 178 43-262 83-263 (286)
17 PRK11783 rlmL 23S rRNA m(2)G24 99.6 3.9E-15 8.3E-20 161.4 15.3 164 43-244 498-664 (702)
18 COG4123 Predicted O-methyltran 99.6 1.7E-14 3.6E-19 136.5 14.0 160 64-255 16-185 (248)
19 PF05175 MTS: Methyltransferas 99.6 9E-15 1.9E-19 131.8 11.0 123 71-235 17-139 (170)
20 PF13659 Methyltransf_26: Meth 99.6 8.3E-15 1.8E-19 122.7 8.7 116 86-238 1-117 (117)
21 COG2242 CobL Precorrin-6B meth 99.6 5.9E-14 1.3E-18 126.8 14.0 142 70-264 19-160 (187)
22 COG2226 UbiE Methylase involve 99.6 3.3E-14 7.1E-19 134.3 12.5 123 75-245 41-163 (238)
23 TIGR00537 hemK_rel_arch HemK-r 99.5 1.3E-13 2.9E-18 124.9 15.1 159 70-263 4-163 (179)
24 TIGR03704 PrmC_rel_meth putati 99.5 7.4E-14 1.6E-18 133.7 13.4 138 86-255 87-231 (251)
25 PF01209 Ubie_methyltran: ubiE 99.5 2.1E-14 4.7E-19 135.9 9.0 132 76-255 38-169 (233)
26 PRK00377 cbiT cobalt-precorrin 99.5 7E-13 1.5E-17 122.3 18.0 137 70-256 25-162 (198)
27 TIGR01177 conserved hypothetic 99.5 1E-13 2.2E-18 137.8 12.7 123 77-238 174-296 (329)
28 PF12847 Methyltransf_18: Meth 99.5 1.3E-13 2.7E-18 114.5 11.2 111 85-237 1-112 (112)
29 TIGR03533 L3_gln_methyl protei 99.5 6.9E-13 1.5E-17 129.2 16.1 138 83-255 119-265 (284)
30 PRK14967 putative methyltransf 99.5 1E-12 2.2E-17 123.5 16.5 154 64-255 13-175 (223)
31 TIGR00080 pimt protein-L-isoas 99.5 7.1E-13 1.5E-17 123.8 13.6 91 74-175 66-156 (215)
32 TIGR03534 RF_mod_PrmC protein- 99.4 2E-12 4.3E-17 122.5 15.1 148 85-262 87-238 (251)
33 COG2519 GCD14 tRNA(1-methylade 99.4 2.2E-12 4.7E-17 121.6 14.6 126 62-238 71-198 (256)
34 PRK08287 cobalt-precorrin-6Y C 99.4 3.5E-12 7.6E-17 116.4 15.2 134 69-256 15-148 (187)
35 PRK11805 N5-glutamine S-adenos 99.4 1.7E-12 3.6E-17 127.8 13.9 123 87-235 135-262 (307)
36 PRK07402 precorrin-6B methylas 99.4 6E-12 1.3E-16 115.7 15.7 147 65-263 20-168 (196)
37 PRK14966 unknown domain/N5-glu 99.4 5.3E-12 1.1E-16 127.9 16.5 170 64-262 229-402 (423)
38 TIGR00536 hemK_fam HemK family 99.4 5E-12 1.1E-16 123.1 15.9 139 86-253 115-257 (284)
39 COG2890 HemK Methylase of poly 99.4 5E-12 1.1E-16 122.9 15.5 171 62-262 85-260 (280)
40 PRK04266 fibrillarin; Provisio 99.4 6.6E-12 1.4E-16 118.4 15.7 115 74-235 59-175 (226)
41 PRK13942 protein-L-isoaspartat 99.4 3.3E-12 7.1E-17 119.3 13.1 99 64-173 55-153 (212)
42 PRK09328 N5-glutamine S-adenos 99.4 1.1E-11 2.4E-16 119.3 17.1 145 82-255 105-253 (275)
43 PF13847 Methyltransf_31: Meth 99.4 3.4E-12 7.4E-17 112.4 12.1 111 84-238 2-112 (152)
44 PRK13944 protein-L-isoaspartat 99.4 7.1E-12 1.5E-16 116.3 13.8 89 75-174 62-151 (205)
45 PTZ00146 fibrillarin; Provisio 99.4 1E-11 2.2E-16 120.5 15.2 117 73-235 114-236 (293)
46 TIGR02469 CbiT precorrin-6Y C5 99.4 1.2E-11 2.7E-16 103.8 13.9 111 78-236 12-122 (124)
47 TIGR02752 MenG_heptapren 2-hep 99.4 3.9E-12 8.5E-17 119.5 11.8 116 76-236 36-151 (231)
48 PRK14968 putative methyltransf 99.4 2E-11 4.3E-16 110.4 16.0 156 74-261 12-169 (188)
49 PRK15001 SAM-dependent 23S rib 99.4 6E-12 1.3E-16 126.8 13.1 124 71-236 214-340 (378)
50 TIGR00138 gidB 16S rRNA methyl 99.4 1.3E-11 2.8E-16 112.6 14.1 125 85-264 42-168 (181)
51 PLN02233 ubiquinone biosynthes 99.4 8.2E-12 1.8E-16 120.2 13.2 118 76-238 64-184 (261)
52 PF08704 GCD14: tRNA methyltra 99.4 5.1E-12 1.1E-16 120.3 11.3 97 70-174 25-122 (247)
53 PRK09489 rsmC 16S ribosomal RN 99.4 7.6E-12 1.7E-16 124.9 13.1 129 71-243 182-310 (342)
54 COG2813 RsmC 16S RNA G1207 met 99.3 1.3E-11 2.7E-16 119.4 12.9 125 70-237 143-267 (300)
55 PRK03522 rumB 23S rRNA methylu 99.3 1.1E-11 2.4E-16 122.4 12.8 86 80-178 168-253 (315)
56 KOG1540|consensus 99.3 7.5E-12 1.6E-16 117.5 10.6 138 77-263 92-237 (296)
57 PF01135 PCMT: Protein-L-isoas 99.3 7.4E-12 1.6E-16 116.6 10.4 101 64-175 51-151 (209)
58 PRK00107 gidB 16S rRNA methylt 99.3 2.6E-11 5.6E-16 111.2 13.5 122 84-261 44-165 (187)
59 PRK13168 rumA 23S rRNA m(5)U19 99.3 2.1E-11 4.5E-16 125.9 13.5 89 79-177 291-379 (443)
60 COG2264 PrmA Ribosomal protein 99.3 3.1E-11 6.7E-16 117.2 13.4 138 72-264 147-287 (300)
61 PRK00121 trmB tRNA (guanine-N( 99.3 4.5E-11 9.8E-16 110.7 13.9 117 85-237 40-157 (202)
62 PRK01544 bifunctional N5-gluta 99.3 3.6E-11 7.9E-16 125.9 14.7 139 85-255 138-284 (506)
63 TIGR00479 rumA 23S rRNA (uraci 99.3 2.1E-11 4.6E-16 125.4 12.5 90 78-177 285-374 (431)
64 PRK11873 arsM arsenite S-adeno 99.3 2.7E-11 5.8E-16 116.9 12.4 112 80-236 72-183 (272)
65 COG2518 Pcm Protein-L-isoaspar 99.3 2.3E-11 5.1E-16 112.2 10.7 98 63-174 50-147 (209)
66 COG1041 Predicted DNA modifica 99.3 1.7E-11 3.7E-16 120.6 10.4 127 72-237 184-311 (347)
67 TIGR00091 tRNA (guanine-N(7)-) 99.3 4.1E-11 9E-16 110.2 12.2 141 85-263 16-156 (194)
68 PLN02244 tocopherol O-methyltr 99.3 3.4E-11 7.4E-16 120.2 11.8 108 84-238 117-225 (340)
69 PRK00312 pcm protein-L-isoaspa 99.3 1E-10 2.2E-15 108.8 14.2 96 65-174 58-153 (212)
70 TIGR00438 rrmJ cell division p 99.3 1.1E-10 2.3E-15 106.7 14.0 131 81-250 28-158 (188)
71 COG2265 TrmA SAM-dependent met 99.3 3.7E-11 7.9E-16 123.1 12.1 91 77-178 285-375 (432)
72 PF06325 PrmA: Ribosomal prote 99.2 6.2E-11 1.3E-15 115.8 12.5 135 72-264 146-282 (295)
73 KOG2904|consensus 99.2 9.1E-11 2E-15 111.1 13.0 151 85-256 148-303 (328)
74 PRK10909 rsmD 16S rRNA m(2)G96 99.2 7.2E-11 1.6E-15 109.2 12.2 80 84-175 52-131 (199)
75 PLN02781 Probable caffeoyl-CoA 99.2 9.8E-11 2.1E-15 111.0 13.4 125 72-238 55-180 (234)
76 COG2263 Predicted RNA methylas 99.2 2.3E-10 5E-15 103.4 15.0 139 63-257 21-161 (198)
77 PLN02476 O-methyltransferase 99.2 6.3E-11 1.4E-15 114.6 12.0 129 69-239 102-231 (278)
78 PLN02396 hexaprenyldihydroxybe 99.2 3E-10 6.6E-15 112.4 16.7 106 83-236 129-235 (322)
79 PRK11207 tellurite resistance 99.2 9.8E-11 2.1E-15 108.0 12.1 115 74-235 19-133 (197)
80 PRK11036 putative S-adenosyl-L 99.2 2E-10 4.4E-15 109.9 14.5 108 84-238 43-151 (255)
81 PRK14121 tRNA (guanine-N(7)-)- 99.2 1.6E-10 3.5E-15 116.4 14.3 120 81-238 118-237 (390)
82 TIGR00406 prmA ribosomal prote 99.2 2.4E-10 5.1E-15 111.6 15.0 134 72-262 144-280 (288)
83 PF03602 Cons_hypoth95: Conser 99.2 3.4E-11 7.4E-16 110.0 8.5 82 85-175 42-124 (183)
84 PRK15451 tRNA cmo(5)U34 methyl 99.2 1.7E-10 3.7E-15 110.1 13.4 108 84-237 55-165 (247)
85 PLN02672 methionine S-methyltr 99.2 2.7E-10 5.9E-15 127.0 16.3 173 62-262 91-300 (1082)
86 COG2227 UbiG 2-polyprenyl-3-me 99.2 4.2E-11 9E-16 112.1 8.0 105 84-237 58-162 (243)
87 PRK11188 rrmJ 23S rRNA methylt 99.2 2.2E-10 4.7E-15 106.8 12.9 114 83-235 49-164 (209)
88 PF05958 tRNA_U5-meth_tr: tRNA 99.2 1.4E-10 3.1E-15 116.3 11.6 98 77-178 189-291 (352)
89 TIGR02085 meth_trns_rumB 23S r 99.2 2E-10 4.3E-15 116.2 12.7 84 81-177 229-312 (374)
90 PF01170 UPF0020: Putative RNA 99.2 5.2E-10 1.1E-14 101.9 13.8 118 74-228 17-143 (179)
91 PF08241 Methyltransf_11: Meth 99.2 3.8E-11 8.2E-16 95.6 5.2 95 90-234 1-95 (95)
92 PRK00050 16S rRNA m(4)C1402 me 99.2 5.4E-10 1.2E-14 109.1 14.1 93 78-179 12-104 (296)
93 PRK13943 protein-L-isoaspartat 99.2 3.8E-10 8.3E-15 111.7 13.3 86 77-173 72-157 (322)
94 PRK05031 tRNA (uracil-5-)-meth 99.1 2.6E-10 5.5E-15 114.9 11.9 88 86-177 207-300 (362)
95 PF02353 CMAS: Mycolic acid cy 99.1 1E-10 2.2E-15 113.4 8.6 123 70-240 47-170 (273)
96 PTZ00098 phosphoethanolamine N 99.1 3.9E-10 8.4E-15 108.7 12.6 115 75-237 42-157 (263)
97 COG2230 Cfa Cyclopropane fatty 99.1 4.1E-10 9E-15 108.6 12.6 116 74-238 61-178 (283)
98 PRK08317 hypothetical protein; 99.1 6.3E-10 1.4E-14 103.7 13.6 115 78-238 12-126 (241)
99 PF02475 Met_10: Met-10+ like- 99.1 1.3E-10 2.9E-15 107.4 8.6 79 83-174 99-178 (200)
100 PHA03411 putative methyltransf 99.1 1.6E-09 3.5E-14 104.3 15.5 146 81-262 60-211 (279)
101 COG0742 N6-adenine-specific me 99.1 5.4E-10 1.2E-14 101.6 11.6 82 84-175 42-124 (187)
102 PRK00517 prmA ribosomal protei 99.1 1.5E-09 3.3E-14 103.7 15.1 119 83-263 117-236 (250)
103 COG4122 Predicted O-methyltran 99.1 5.3E-10 1.2E-14 104.4 11.5 124 71-240 45-170 (219)
104 PRK04338 N(2),N(2)-dimethylgua 99.1 4.9E-10 1.1E-14 113.4 11.7 87 76-174 47-134 (382)
105 TIGR00477 tehB tellurite resis 99.1 7.2E-10 1.5E-14 102.1 11.7 113 76-236 21-133 (195)
106 TIGR00095 RNA methyltransferas 99.1 9E-10 2E-14 101.1 12.3 82 85-175 49-131 (189)
107 PRK01683 trans-aconitate 2-met 99.1 9.1E-10 2E-14 105.3 12.7 114 70-235 16-129 (258)
108 TIGR02143 trmA_only tRNA (urac 99.1 5.8E-10 1.3E-14 111.9 11.8 88 87-177 199-291 (353)
109 PRK10258 biotin biosynthesis p 99.1 4.2E-10 9E-15 107.2 10.2 115 69-236 26-140 (251)
110 PRK14103 trans-aconitate 2-met 99.1 5.5E-10 1.2E-14 106.9 10.9 104 78-235 22-125 (255)
111 PF01596 Methyltransf_3: O-met 99.1 4E-10 8.8E-15 104.7 9.3 122 75-238 35-157 (205)
112 TIGR00308 TRM1 tRNA(guanine-26 99.1 8.8E-10 1.9E-14 111.2 11.3 78 87-174 46-123 (374)
113 PLN02336 phosphoethanolamine N 99.1 1.4E-09 3E-14 113.2 12.9 114 77-238 258-371 (475)
114 PF13649 Methyltransf_25: Meth 99.1 8.1E-10 1.7E-14 90.5 8.9 71 89-171 1-73 (101)
115 PHA03412 putative methyltransf 99.1 1.4E-09 2.9E-14 102.6 11.5 112 85-235 49-162 (241)
116 PRK00216 ubiE ubiquinone/menaq 99.1 3.5E-09 7.5E-14 99.1 14.3 117 77-238 43-160 (239)
117 TIGR00740 methyltransferase, p 99.0 3.4E-09 7.4E-14 100.4 13.5 107 84-236 52-161 (239)
118 PRK12335 tellurite resistance 99.0 3.2E-09 7E-14 103.5 12.7 104 84-235 119-222 (287)
119 TIGR01934 MenG_MenH_UbiE ubiqu 99.0 6.9E-09 1.5E-13 96.0 13.1 114 78-238 32-145 (223)
120 PRK04457 spermidine synthase; 99.0 1E-08 2.2E-13 98.9 14.4 132 83-256 64-196 (262)
121 COG0293 FtsJ 23S rRNA methylas 99.0 9.9E-09 2.1E-13 94.7 13.2 133 83-255 43-175 (205)
122 COG2520 Predicted methyltransf 99.0 3.5E-09 7.5E-14 104.9 11.0 101 84-235 187-288 (341)
123 smart00828 PKS_MT Methyltransf 99.0 5.7E-09 1.2E-13 97.5 11.9 104 87-237 1-105 (224)
124 PF09445 Methyltransf_15: RNA 99.0 1.9E-09 4.2E-14 96.3 8.1 81 87-179 1-83 (163)
125 TIGR00452 methyltransferase, p 99.0 1.3E-08 2.9E-13 100.4 14.7 116 80-243 116-232 (314)
126 PLN03075 nicotianamine synthas 99.0 2.5E-09 5.3E-14 104.2 9.2 108 85-236 123-233 (296)
127 KOG1270|consensus 98.9 2.3E-09 5E-14 101.4 8.4 101 84-236 88-195 (282)
128 PRK15068 tRNA mo(5)U34 methylt 98.9 6.7E-09 1.5E-13 103.0 11.7 112 78-237 115-227 (322)
129 PRK05134 bifunctional 3-demeth 98.9 2.5E-08 5.4E-13 93.8 14.4 115 76-238 39-153 (233)
130 PLN02589 caffeoyl-CoA O-methyl 98.9 8.4E-09 1.8E-13 98.5 11.2 126 71-237 65-191 (247)
131 PRK11705 cyclopropane fatty ac 98.9 9.7E-09 2.1E-13 104.2 12.1 112 76-238 158-269 (383)
132 PRK00811 spermidine synthase; 98.9 1.2E-08 2.6E-13 99.4 12.3 112 84-236 75-191 (283)
133 PF03848 TehB: Tellurite resis 98.9 2.9E-08 6.2E-13 91.2 14.0 115 73-236 19-133 (192)
134 PLN02490 MPBQ/MSBQ methyltrans 98.9 1.7E-08 3.7E-13 100.6 13.2 103 84-235 112-214 (340)
135 TIGR02716 C20_methyl_CrtF C-20 98.9 1.9E-08 4E-13 98.9 13.4 123 75-244 139-262 (306)
136 PRK06922 hypothetical protein; 98.9 1.9E-08 4.1E-13 106.7 14.2 124 80-236 413-537 (677)
137 PF02390 Methyltransf_4: Putat 98.9 1.6E-08 3.4E-13 93.4 12.0 138 87-262 19-157 (195)
138 PF08242 Methyltransf_12: Meth 98.9 2.9E-10 6.3E-15 92.6 0.3 99 90-232 1-99 (99)
139 PF02384 N6_Mtase: N-6 DNA Met 98.9 2E-09 4.3E-14 105.9 6.2 167 64-255 25-205 (311)
140 cd02440 AdoMet_MTases S-adenos 98.9 1.6E-08 3.5E-13 80.0 10.5 103 88-235 1-103 (107)
141 TIGR02072 BioC biotin biosynth 98.9 8.2E-09 1.8E-13 96.4 9.7 102 85-236 34-135 (240)
142 smart00650 rADc Ribosomal RNA 98.9 1E-08 2.2E-13 92.1 9.7 82 78-175 6-87 (169)
143 COG2521 Predicted archaeal met 98.9 1.7E-09 3.7E-14 100.5 4.4 115 79-235 128-244 (287)
144 TIGR00417 speE spermidine synt 98.8 2.1E-08 4.6E-13 97.0 11.5 113 85-238 72-188 (270)
145 PF05401 NodS: Nodulation prot 98.8 1.3E-08 2.7E-13 93.2 9.3 121 68-236 26-146 (201)
146 PF01728 FtsJ: FtsJ-like methy 98.8 8E-09 1.7E-13 93.6 7.6 136 84-260 22-161 (181)
147 TIGR01983 UbiG ubiquinone bios 98.8 3.7E-08 8E-13 91.8 11.9 108 84-238 44-151 (224)
148 PRK11727 23S rRNA mA1618 methy 98.8 7.1E-08 1.5E-12 95.4 14.4 87 85-179 114-203 (321)
149 KOG1663|consensus 98.8 4.3E-08 9.3E-13 91.3 11.7 127 68-236 56-183 (237)
150 TIGR00006 S-adenosyl-methyltra 98.8 1.1E-07 2.4E-12 93.2 15.0 92 79-178 14-105 (305)
151 KOG1271|consensus 98.8 1.9E-08 4.2E-13 90.4 8.5 118 87-246 69-191 (227)
152 TIGR02021 BchM-ChlM magnesium 98.8 8.1E-08 1.8E-12 89.7 13.1 72 83-171 53-125 (219)
153 COG0220 Predicted S-adenosylme 98.8 3.1E-08 6.7E-13 93.4 9.3 115 87-237 50-165 (227)
154 PTZ00338 dimethyladenosine tra 98.8 4.1E-08 9E-13 96.2 10.1 98 65-178 15-114 (294)
155 PLN02336 phosphoethanolamine N 98.7 1E-07 2.2E-12 99.2 13.2 119 75-239 27-145 (475)
156 smart00138 MeTrc Methyltransfe 98.7 5.5E-08 1.2E-12 93.9 10.0 109 84-236 98-242 (264)
157 KOG2915|consensus 98.7 2.4E-07 5.1E-12 88.1 14.0 99 65-174 87-186 (314)
158 PRK11088 rrmA 23S rRNA methylt 98.7 6.4E-08 1.4E-12 93.6 10.1 72 84-171 84-157 (272)
159 PRK03612 spermidine synthase; 98.7 1.6E-07 3.4E-12 99.1 13.7 116 84-239 296-418 (521)
160 TIGR03840 TMPT_Se_Te thiopurin 98.7 1.2E-07 2.5E-12 88.8 11.2 111 84-239 33-155 (213)
161 PF13489 Methyltransf_23: Meth 98.7 3.7E-08 8E-13 86.3 7.4 107 74-238 10-117 (161)
162 KOG2187|consensus 98.7 2.5E-08 5.5E-13 102.0 7.0 100 69-177 361-467 (534)
163 TIGR03587 Pse_Me-ase pseudamin 98.7 2.7E-07 5.9E-12 85.8 13.3 72 82-171 40-111 (204)
164 PRK10742 putative methyltransf 98.7 1.1E-07 2.4E-12 90.2 10.4 89 75-176 76-175 (250)
165 PLN02366 spermidine synthase 98.7 2E-07 4.3E-12 91.9 12.3 112 84-235 90-205 (308)
166 PRK14896 ksgA 16S ribosomal RN 98.7 1E-07 2.3E-12 91.6 10.0 85 74-176 18-102 (258)
167 PF01269 Fibrillarin: Fibrilla 98.7 2.3E-07 4.9E-12 86.4 11.7 135 73-253 55-198 (229)
168 PRK01581 speE spermidine synth 98.6 1.5E-07 3.1E-12 94.1 10.5 124 85-250 150-280 (374)
169 COG0275 Predicted S-adenosylme 98.6 9.4E-07 2E-11 85.5 15.6 95 77-178 15-109 (314)
170 PRK00274 ksgA 16S ribosomal RN 98.6 1.2E-07 2.5E-12 92.0 9.0 87 74-177 31-117 (272)
171 KOG3191|consensus 98.6 5.7E-07 1.2E-11 81.0 12.0 137 86-255 44-184 (209)
172 TIGR03438 probable methyltrans 98.6 8.6E-07 1.9E-11 87.2 14.4 65 84-148 62-127 (301)
173 COG4106 Tam Trans-aconitate me 98.6 1.2E-07 2.6E-12 87.5 7.5 111 72-235 18-128 (257)
174 PF07021 MetW: Methionine bios 98.6 2.9E-07 6.3E-12 84.0 10.0 87 83-210 11-97 (193)
175 KOG1541|consensus 98.6 2.8E-07 6.2E-12 85.2 9.8 146 64-254 27-174 (270)
176 PRK05785 hypothetical protein; 98.6 1.8E-07 3.9E-12 88.3 8.4 66 85-171 51-116 (226)
177 PRK13255 thiopurine S-methyltr 98.6 9.1E-07 2E-11 83.1 13.0 108 82-238 34-157 (218)
178 KOG2671|consensus 98.6 3.2E-08 6.9E-13 96.6 3.2 89 74-175 197-294 (421)
179 PRK06202 hypothetical protein; 98.6 1.9E-07 4.1E-12 88.0 8.1 79 79-171 54-135 (232)
180 PRK01544 bifunctional N5-gluta 98.5 5.9E-07 1.3E-11 94.4 12.0 138 85-261 347-484 (506)
181 PF01795 Methyltransf_5: MraW 98.5 2E-07 4.4E-12 91.4 7.5 93 78-178 13-106 (310)
182 TIGR02987 met_A_Alw26 type II 98.5 1.4E-06 3E-11 92.1 14.0 88 86-179 32-126 (524)
183 KOG4589|consensus 98.5 2.4E-06 5.2E-11 77.3 13.1 137 84-259 68-205 (232)
184 PRK07580 Mg-protoporphyrin IX 98.5 1.8E-06 3.9E-11 80.7 12.1 71 84-171 62-133 (230)
185 KOG1596|consensus 98.4 7.3E-07 1.6E-11 83.4 8.3 136 73-254 138-282 (317)
186 COG0116 Predicted N6-adenine-s 98.4 2.3E-06 4.9E-11 85.8 12.3 138 62-236 162-344 (381)
187 PLN02585 magnesium protoporphy 98.4 7.8E-07 1.7E-11 88.0 8.9 70 85-171 144-218 (315)
188 KOG3420|consensus 98.4 2.9E-07 6.4E-12 79.9 5.0 77 84-174 47-123 (185)
189 COG1889 NOP1 Fibrillarin-like 98.4 4.1E-06 8.8E-11 76.7 11.7 129 73-249 58-196 (231)
190 COG4076 Predicted RNA methylas 98.4 4.7E-07 1E-11 81.9 4.8 100 86-233 33-132 (252)
191 KOG2899|consensus 98.3 1.6E-06 3.5E-11 81.4 8.3 48 85-133 58-105 (288)
192 PLN02823 spermine synthase 98.3 8.4E-06 1.8E-10 81.4 13.0 78 86-174 104-185 (336)
193 TIGR00755 ksgA dimethyladenosi 98.3 2.9E-06 6.3E-11 81.2 9.3 82 75-174 19-103 (253)
194 KOG2730|consensus 98.3 5.4E-07 1.2E-11 83.3 3.9 85 85-179 94-179 (263)
195 PF02527 GidB: rRNA small subu 98.3 3E-06 6.4E-11 77.6 8.4 71 88-171 51-121 (184)
196 PRK11783 rlmL 23S rRNA m(2)G24 98.3 8.2E-06 1.8E-10 89.1 13.3 84 84-176 189-314 (702)
197 PF05185 PRMT5: PRMT5 arginine 98.3 3.2E-06 6.9E-11 87.5 9.6 117 86-246 187-309 (448)
198 COG0286 HsdM Type I restrictio 98.2 3.6E-06 7.8E-11 88.1 9.4 110 64-179 165-278 (489)
199 COG0030 KsgA Dimethyladenosine 98.2 5.1E-06 1.1E-10 79.6 9.5 97 65-177 9-107 (259)
200 PF02005 TRM: N2,N2-dimethylgu 98.2 3.3E-06 7E-11 85.5 8.6 78 86-173 50-129 (377)
201 PF03291 Pox_MCEL: mRNA cappin 98.2 3.9E-06 8.4E-11 83.6 8.6 114 85-237 62-187 (331)
202 KOG1499|consensus 98.2 6.3E-06 1.4E-10 81.3 9.9 112 85-241 60-172 (346)
203 KOG1661|consensus 98.2 4.3E-06 9.2E-11 77.0 7.9 86 77-173 72-170 (237)
204 PF10294 Methyltransf_16: Puta 98.2 4E-06 8.6E-11 75.9 6.9 80 83-171 43-125 (173)
205 KOG1099|consensus 98.2 5.5E-06 1.2E-10 77.1 7.8 129 87-255 43-179 (294)
206 PF08003 Methyltransf_9: Prote 98.1 1.8E-05 4E-10 77.0 10.7 119 77-243 107-226 (315)
207 COG0357 GidB Predicted S-adeno 98.1 2.3E-05 5.1E-10 73.2 10.3 73 86-171 68-141 (215)
208 PF01564 Spermine_synth: Sperm 98.1 2.3E-05 5.1E-10 74.9 10.5 127 85-254 76-207 (246)
209 KOG4300|consensus 98.1 5.1E-06 1.1E-10 76.4 5.6 125 81-255 72-198 (252)
210 PF01861 DUF43: Protein of unk 98.0 4.2E-05 9E-10 72.3 11.1 135 85-267 44-180 (243)
211 TIGR02081 metW methionine bios 98.0 2.2E-05 4.8E-10 71.9 9.2 71 84-172 12-82 (194)
212 PRK13256 thiopurine S-methyltr 98.0 3.5E-05 7.7E-10 72.7 10.4 112 83-238 41-165 (226)
213 COG4976 Predicted methyltransf 98.0 8.3E-06 1.8E-10 76.1 5.6 106 85-241 125-230 (287)
214 COG3963 Phospholipid N-methylt 98.0 8.6E-05 1.9E-09 66.3 11.2 118 78-238 41-158 (194)
215 PF05219 DREV: DREV methyltran 98.0 3.7E-05 8E-10 73.3 9.3 94 85-235 94-187 (265)
216 PF05724 TPMT: Thiopurine S-me 98.0 2.4E-05 5.2E-10 73.5 7.9 77 81-170 33-121 (218)
217 PF00891 Methyltransf_2: O-met 97.9 7.6E-05 1.7E-09 70.6 11.2 112 79-244 94-207 (241)
218 PF12147 Methyltransf_20: Puta 97.9 0.0002 4.3E-09 69.4 13.6 130 86-256 136-267 (311)
219 PF04816 DUF633: Family of unk 97.9 0.00029 6.4E-09 65.6 14.5 120 89-262 1-121 (205)
220 PLN02232 ubiquinone biosynthes 97.9 3.9E-05 8.3E-10 68.4 7.6 80 114-238 1-83 (160)
221 KOG0820|consensus 97.9 6.1E-05 1.3E-09 72.0 8.7 82 78-175 51-133 (315)
222 PF13578 Methyltransf_24: Meth 97.9 1.9E-05 4.2E-10 65.0 4.7 101 90-235 1-104 (106)
223 COG1867 TRM1 N2,N2-dimethylgua 97.8 4E-05 8.7E-10 76.2 7.5 77 86-173 53-129 (380)
224 KOG1975|consensus 97.8 0.00018 3.9E-09 70.4 10.6 137 74-255 108-250 (389)
225 KOG3010|consensus 97.7 0.00012 2.7E-09 68.9 8.2 133 74-255 21-156 (261)
226 TIGR00478 tly hemolysin TlyA f 97.7 5.4E-05 1.2E-09 71.6 5.7 40 84-125 74-113 (228)
227 KOG1500|consensus 97.7 0.00021 4.6E-09 70.1 9.7 75 85-174 177-252 (517)
228 PF00398 RrnaAD: Ribosomal RNA 97.7 0.00017 3.7E-09 69.5 9.0 98 65-175 9-107 (262)
229 PF06962 rRNA_methylase: Putat 97.6 0.00015 3.2E-09 63.3 7.1 115 112-261 1-121 (140)
230 KOG1253|consensus 97.6 3E-05 6.4E-10 79.5 3.1 109 84-238 108-217 (525)
231 COG0421 SpeE Spermidine syntha 97.6 0.00013 2.8E-09 71.1 7.3 115 82-238 74-192 (282)
232 TIGR01444 fkbM_fam methyltrans 97.6 0.00024 5.3E-09 61.3 7.8 59 88-147 1-59 (143)
233 PF06080 DUF938: Protein of un 97.6 0.00051 1.1E-08 63.6 10.2 137 86-258 26-168 (204)
234 PF08123 DOT1: Histone methyla 97.6 0.0011 2.5E-08 61.6 12.4 89 79-176 36-133 (205)
235 KOG3115|consensus 97.6 0.00051 1.1E-08 63.2 9.5 140 86-263 61-207 (249)
236 PRK11760 putative 23S rRNA C24 97.5 0.00026 5.6E-09 70.3 7.8 72 83-175 209-280 (357)
237 KOG2361|consensus 97.5 0.00013 2.7E-09 68.8 4.9 111 88-238 74-185 (264)
238 cd00315 Cyt_C5_DNA_methylase C 97.5 0.00019 4.2E-09 69.7 6.2 75 88-179 2-76 (275)
239 KOG1098|consensus 97.4 0.00052 1.1E-08 72.0 8.2 131 83-253 42-172 (780)
240 PRK04148 hypothetical protein; 97.4 0.0027 5.8E-08 55.1 11.2 73 79-171 10-83 (134)
241 PF04445 SAM_MT: Putative SAM- 97.4 0.00056 1.2E-08 64.7 7.6 87 75-174 63-160 (234)
242 KOG1227|consensus 97.4 7.2E-05 1.6E-09 72.4 1.4 107 62-189 162-279 (351)
243 COG3897 Predicted methyltransf 97.3 0.00029 6.3E-09 64.5 4.5 70 85-171 79-148 (218)
244 PRK10611 chemotaxis methyltran 97.2 0.00083 1.8E-08 65.7 7.0 106 87-235 117-261 (287)
245 PF05971 Methyltransf_10: Prot 97.2 0.0016 3.4E-08 63.9 8.8 86 86-179 103-191 (299)
246 PF11599 AviRa: RRNA methyltra 97.2 0.014 3.1E-07 54.4 14.1 63 69-131 32-98 (246)
247 COG1568 Predicted methyltransf 97.2 0.0043 9.4E-08 59.7 11.0 79 85-174 152-230 (354)
248 COG1189 Predicted rRNA methyla 97.1 0.0019 4.1E-08 61.0 8.5 75 84-174 78-153 (245)
249 TIGR03439 methyl_EasF probable 97.1 0.0034 7.4E-08 62.3 10.8 65 84-148 75-144 (319)
250 PRK00536 speE spermidine synth 97.1 0.0056 1.2E-07 59.1 11.6 72 85-173 72-147 (262)
251 PF03059 NAS: Nicotianamine sy 97.1 0.002 4.3E-08 62.6 8.4 105 87-235 122-229 (276)
252 COG1352 CheR Methylase of chem 97.0 0.0017 3.8E-08 62.8 7.2 107 86-235 97-240 (268)
253 KOG1709|consensus 97.0 0.0055 1.2E-07 57.0 9.6 106 84-235 100-205 (271)
254 TIGR00497 hsdM type I restrict 97.0 0.0037 8E-08 65.8 9.7 107 63-178 193-306 (501)
255 PF13679 Methyltransf_32: Meth 96.9 0.0025 5.4E-08 55.5 6.9 51 84-134 24-77 (141)
256 PF01739 CheR: CheR methyltran 96.9 0.0021 4.6E-08 59.4 6.6 108 87-237 33-176 (196)
257 COG4262 Predicted spermidine s 96.8 0.015 3.2E-07 58.1 12.1 80 84-174 288-374 (508)
258 PF04989 CmcI: Cephalosporin h 96.8 0.0017 3.7E-08 60.3 4.8 82 65-148 11-97 (206)
259 PF10354 DUF2431: Domain of un 96.7 0.042 9E-07 49.5 13.3 141 95-265 6-152 (166)
260 PF00145 DNA_methylase: C-5 cy 96.7 0.0041 8.8E-08 60.8 7.0 74 88-179 2-75 (335)
261 PF05891 Methyltransf_PK: AdoM 96.6 0.01 2.2E-07 55.5 8.9 104 86-235 56-160 (218)
262 COG0500 SmtA SAM-dependent met 96.6 0.018 3.8E-07 47.1 9.5 109 89-242 52-161 (257)
263 PF05148 Methyltransf_8: Hypot 96.5 0.018 3.9E-07 53.6 9.4 122 71-261 58-181 (219)
264 COG2384 Predicted SAM-dependen 96.4 0.078 1.7E-06 49.6 13.0 125 84-262 15-140 (226)
265 PF03141 Methyltransf_29: Puta 96.4 0.0016 3.5E-08 67.3 2.0 101 88-240 120-223 (506)
266 PF10237 N6-adenineMlase: Prob 96.3 0.055 1.2E-06 48.5 11.0 139 66-265 5-144 (162)
267 KOG0024|consensus 96.0 0.061 1.3E-06 53.1 10.6 74 62-140 146-220 (354)
268 PF01234 NNMT_PNMT_TEMT: NNMT/ 96.0 0.037 8E-07 53.3 8.9 141 84-263 55-237 (256)
269 PHA01634 hypothetical protein 95.8 0.05 1.1E-06 46.8 7.8 49 85-135 28-76 (156)
270 PF09243 Rsm22: Mitochondrial 95.8 0.033 7.2E-07 54.1 7.8 47 87-133 35-81 (274)
271 COG1064 AdhP Zn-dependent alco 95.7 0.052 1.1E-06 54.3 9.0 51 81-137 162-213 (339)
272 PF01472 PUA: PUA domain; Int 95.5 0.011 2.3E-07 45.9 2.6 31 347-377 2-32 (74)
273 PRK11524 putative methyltransf 95.5 0.023 5.1E-07 55.3 5.7 72 137-235 8-79 (284)
274 KOG2782|consensus 95.4 0.01 2.2E-07 55.4 2.7 99 77-180 35-133 (303)
275 KOG2078|consensus 95.4 0.0089 1.9E-07 60.7 2.3 64 83-149 247-312 (495)
276 TIGR00675 dcm DNA-methyltransf 95.3 0.022 4.7E-07 56.5 4.9 73 89-179 1-73 (315)
277 COG4798 Predicted methyltransf 95.3 0.29 6.3E-06 45.2 11.5 40 80-119 43-82 (238)
278 PRK01747 mnmC bifunctional tRN 95.1 0.15 3.3E-06 55.5 10.8 126 87-263 59-225 (662)
279 COG2016 Predicted RNA-binding 94.9 0.019 4.1E-07 51.0 2.7 32 346-377 77-108 (161)
280 TIGR00451 unchar_dom_2 unchara 94.7 0.023 5E-07 47.2 2.6 33 344-376 29-61 (107)
281 PRK11524 putative methyltransf 94.7 0.064 1.4E-06 52.3 6.0 46 84-132 207-252 (284)
282 COG0270 Dcm Site-specific DNA 94.5 0.077 1.7E-06 52.9 6.2 77 87-178 4-80 (328)
283 KOG3178|consensus 94.4 0.26 5.7E-06 49.1 9.5 107 79-238 167-277 (342)
284 TIGR03684 arCOG00985 arCOG0415 94.2 0.039 8.5E-07 48.7 3.0 33 344-376 68-100 (150)
285 KOG1269|consensus 94.1 0.068 1.5E-06 54.0 4.8 77 82-171 107-184 (364)
286 PRK14560 putative RNA-binding 93.9 0.047 1E-06 48.8 3.0 33 344-376 75-107 (160)
287 PF01555 N6_N4_Mtase: DNA meth 93.8 0.12 2.5E-06 47.5 5.5 43 83-128 189-231 (231)
288 KOG3987|consensus 93.6 0.023 5E-07 52.7 0.4 39 86-127 113-151 (288)
289 PRK13699 putative methylase; P 93.4 0.2 4.3E-06 47.4 6.5 49 83-134 161-209 (227)
290 PRK09880 L-idonate 5-dehydroge 93.4 0.62 1.3E-05 46.1 10.3 51 82-137 166-217 (343)
291 PRK13699 putative methylase; P 92.9 0.12 2.7E-06 48.8 4.3 91 139-262 3-93 (227)
292 PRK10458 DNA cytosine methylas 92.9 0.37 8E-06 50.4 8.2 90 86-179 88-183 (467)
293 COG3129 Predicted SAM-dependen 92.7 0.2 4.2E-06 47.4 5.1 83 85-178 78-166 (292)
294 COG1063 Tdh Threonine dehydrog 92.4 0.38 8.3E-06 48.3 7.3 45 83-128 166-211 (350)
295 KOG1562|consensus 92.2 0.68 1.5E-05 45.4 8.3 124 85-254 121-248 (337)
296 KOG3045|consensus 92.2 0.53 1.1E-05 45.3 7.4 87 81-235 175-263 (325)
297 KOG1501|consensus 91.2 0.44 9.5E-06 48.9 6.0 55 88-144 69-124 (636)
298 PF00107 ADH_zinc_N: Zinc-bind 91.0 0.92 2E-05 37.9 7.1 36 96-137 2-37 (130)
299 PF01555 N6_N4_Mtase: DNA meth 90.6 0.26 5.6E-06 45.1 3.6 79 166-262 1-80 (231)
300 PF07091 FmrO: Ribosomal RNA m 90.6 1 2.2E-05 43.2 7.6 74 84-171 104-177 (251)
301 KOG0822|consensus 90.4 0.5 1.1E-05 49.6 5.7 61 88-149 370-434 (649)
302 PRK05599 hypothetical protein; 90.4 5 0.00011 37.6 12.3 83 88-173 2-85 (246)
303 KOG1331|consensus 90.3 0.53 1.2E-05 45.8 5.5 97 84-235 44-143 (293)
304 KOG3201|consensus 89.8 0.28 6.1E-06 44.0 2.9 48 85-133 29-77 (201)
305 PRK07533 enoyl-(acyl carrier p 89.4 9.4 0.0002 36.0 13.4 86 85-174 9-97 (258)
306 PRK08339 short chain dehydroge 89.2 9.4 0.0002 36.1 13.3 86 85-173 7-93 (263)
307 PRK09424 pntA NAD(P) transhydr 89.2 3 6.5E-05 44.2 10.5 48 83-136 162-210 (509)
308 cd08230 glucose_DH Glucose deh 89.0 2.3 4.9E-05 42.3 9.1 48 83-136 170-221 (355)
309 PRK05867 short chain dehydroge 88.9 6.5 0.00014 36.7 11.8 86 85-174 8-95 (253)
310 PRK06172 short chain dehydroge 88.5 13 0.00029 34.5 13.6 85 85-173 6-92 (253)
311 PRK07677 short chain dehydroge 88.1 11 0.00023 35.2 12.7 86 86-175 1-88 (252)
312 PRK06914 short chain dehydroge 88.0 12 0.00026 35.5 13.1 87 86-175 3-91 (280)
313 PRK06701 short chain dehydroge 88.0 12 0.00026 36.1 13.3 86 85-174 45-133 (290)
314 PRK06940 short chain dehydroge 87.9 12 0.00025 35.8 13.1 81 88-174 4-85 (275)
315 PF04378 RsmJ: Ribosomal RNA s 87.9 1.2 2.7E-05 42.6 6.0 74 92-175 62-135 (245)
316 KOG2352|consensus 87.7 3.2 6.9E-05 43.3 9.3 114 84-237 46-162 (482)
317 PRK08594 enoyl-(acyl carrier p 87.6 14 0.00031 34.8 13.3 88 85-174 6-96 (257)
318 TIGR03451 mycoS_dep_FDH mycoth 87.6 3.5 7.5E-05 41.0 9.5 51 81-136 172-223 (358)
319 PF05430 Methyltransf_30: S-ad 87.6 1.1 2.4E-05 38.4 5.0 78 138-264 33-110 (124)
320 PF05711 TylF: Macrocin-O-meth 87.5 4.2 9.1E-05 39.0 9.5 123 87-256 76-230 (248)
321 PRK07102 short chain dehydroge 87.3 13 0.00028 34.4 12.7 82 88-174 3-85 (243)
322 COG2933 Predicted SAM-dependen 87.2 1.6 3.4E-05 42.2 6.3 70 83-173 209-278 (358)
323 PRK12939 short chain dehydroge 86.9 15 0.00033 33.7 13.0 85 85-173 6-92 (250)
324 PF07279 DUF1442: Protein of u 86.9 4.9 0.00011 37.7 9.2 93 70-173 26-123 (218)
325 PRK07576 short chain dehydroge 86.8 17 0.00036 34.3 13.4 85 85-173 8-94 (264)
326 PRK08945 putative oxoacyl-(acy 86.5 16 0.00034 33.9 12.8 91 83-174 9-101 (247)
327 KOG2940|consensus 86.4 0.52 1.1E-05 44.6 2.6 82 75-171 61-143 (325)
328 PF04672 Methyltransf_19: S-ad 86.4 2.1 4.6E-05 41.5 6.8 62 87-148 70-133 (267)
329 cd08254 hydroxyacyl_CoA_DH 6-h 86.3 6.9 0.00015 37.9 10.6 49 82-136 162-211 (338)
330 PRK07523 gluconate 5-dehydroge 86.2 15 0.00033 34.2 12.6 86 85-174 9-96 (255)
331 KOG1122|consensus 86.0 0.25 5.4E-06 50.4 0.2 60 317-379 90-149 (460)
332 PRK07831 short chain dehydroge 85.8 20 0.00044 33.5 13.3 88 85-174 16-106 (262)
333 PF00106 adh_short: short chai 85.7 21 0.00044 30.7 12.4 84 89-175 3-90 (167)
334 PRK07097 gluconate 5-dehydroge 85.6 22 0.00047 33.4 13.4 87 85-175 9-97 (265)
335 PLN02827 Alcohol dehydrogenase 85.5 4.6 9.9E-05 40.7 9.1 50 81-137 189-241 (378)
336 PF07942 N2227: N2227-like pro 85.2 3.8 8.2E-05 39.8 7.9 42 85-129 56-97 (270)
337 PF11899 DUF3419: Protein of u 84.7 2.4 5.2E-05 43.2 6.7 65 64-131 13-78 (380)
338 PLN03154 putative allyl alcoho 84.7 7.2 0.00016 38.8 10.0 52 81-137 154-207 (348)
339 KOG1197|consensus 84.6 3 6.4E-05 40.3 6.7 65 78-147 139-205 (336)
340 PRK08324 short chain dehydroge 84.5 12 0.00026 41.0 12.5 85 85-174 421-507 (681)
341 PRK07109 short chain dehydroge 84.3 22 0.00048 35.2 13.3 86 85-174 7-94 (334)
342 PRK13534 7-cyano-7-deazaguanin 84.3 0.6 1.3E-05 50.7 2.2 34 345-378 563-596 (639)
343 PRK06124 gluconate 5-dehydroge 84.2 29 0.00063 32.2 13.5 86 85-174 10-97 (256)
344 PF03721 UDPG_MGDP_dh_N: UDP-g 84.1 2.4 5.3E-05 38.6 5.8 34 222-256 106-139 (185)
345 PRK08085 gluconate 5-dehydroge 84.1 27 0.00058 32.5 13.2 87 85-175 8-96 (254)
346 COG5459 Predicted rRNA methyla 83.9 0.96 2.1E-05 45.4 3.2 39 87-125 115-153 (484)
347 PRK10309 galactitol-1-phosphat 83.9 7.1 0.00015 38.5 9.6 51 81-136 156-207 (347)
348 PRK09242 tropinone reductase; 83.6 28 0.0006 32.4 13.1 86 85-173 8-96 (257)
349 PRK12829 short chain dehydroge 83.4 22 0.00047 33.1 12.3 88 81-174 6-95 (264)
350 COG2961 ComJ Protein involved 83.2 9.8 0.00021 36.6 9.5 79 84-175 88-166 (279)
351 PRK06139 short chain dehydroge 83.2 24 0.00052 35.0 13.0 86 85-174 6-93 (330)
352 TIGR02825 B4_12hDH leukotriene 83.1 8.4 0.00018 37.5 9.6 51 81-137 134-186 (325)
353 PRK07326 short chain dehydroge 82.7 25 0.00055 32.1 12.3 60 86-148 6-66 (237)
354 PRK06125 short chain dehydroge 82.7 35 0.00077 31.8 13.5 82 86-173 7-89 (259)
355 cd08281 liver_ADH_like1 Zinc-d 82.7 7.2 0.00016 39.0 9.1 51 81-136 187-238 (371)
356 PRK08415 enoyl-(acyl carrier p 82.6 36 0.00078 32.5 13.7 86 85-174 4-92 (274)
357 PRK07666 fabG 3-ketoacyl-(acyl 82.5 33 0.00072 31.5 13.0 85 86-174 7-93 (239)
358 TIGR03366 HpnZ_proposed putati 82.2 9.7 0.00021 36.4 9.5 51 81-136 116-167 (280)
359 PF05050 Methyltransf_21: Meth 82.2 3.6 7.8E-05 35.5 6.0 43 91-133 1-48 (167)
360 PRK06603 enoyl-(acyl carrier p 82.2 40 0.00086 31.8 13.6 86 85-174 7-95 (260)
361 PRK05786 fabG 3-ketoacyl-(acyl 82.1 25 0.00054 32.1 12.0 85 85-174 4-90 (238)
362 TIGR03206 benzo_BadH 2-hydroxy 82.1 33 0.00072 31.5 12.9 86 86-175 3-90 (250)
363 TIGR02822 adh_fam_2 zinc-bindi 82.1 15 0.00033 36.1 11.1 51 81-137 161-212 (329)
364 PRK15182 Vi polysaccharide bio 82.0 11 0.00024 39.0 10.4 34 94-127 12-45 (425)
365 PRK08159 enoyl-(acyl carrier p 82.0 42 0.00092 31.9 13.9 86 85-174 9-97 (272)
366 PRK13394 3-hydroxybutyrate deh 81.9 32 0.0007 31.9 12.8 86 86-175 7-94 (262)
367 PRK06079 enoyl-(acyl carrier p 81.9 23 0.00049 33.2 11.8 84 85-174 6-92 (252)
368 PRK12937 short chain dehydroge 81.9 35 0.00077 31.2 13.0 85 86-174 5-92 (245)
369 PRK06181 short chain dehydroge 81.8 41 0.00088 31.4 13.5 60 87-148 2-62 (263)
370 PRK07062 short chain dehydroge 81.6 39 0.00084 31.6 13.3 87 85-174 7-96 (265)
371 KOG3350|consensus 81.6 11 0.00024 34.4 8.8 92 62-175 49-145 (217)
372 PRK08862 short chain dehydroge 81.3 41 0.00088 31.2 13.1 86 85-173 4-91 (227)
373 PRK08643 acetoin reductase; Va 81.0 45 0.00098 30.9 13.4 84 86-173 2-87 (256)
374 KOG2651|consensus 80.9 4.9 0.00011 40.9 6.8 52 74-127 142-193 (476)
375 PRK05653 fabG 3-ketoacyl-(acyl 80.8 42 0.00091 30.5 13.0 85 86-174 5-91 (246)
376 PRK08589 short chain dehydroge 80.8 38 0.00082 32.1 13.0 85 85-174 5-91 (272)
377 PRK06949 short chain dehydroge 80.5 35 0.00075 31.6 12.5 87 85-174 8-95 (258)
378 TIGR02818 adh_III_F_hyde S-(hy 80.4 23 0.00049 35.4 11.8 52 81-137 181-233 (368)
379 PRK12429 3-hydroxybutyrate deh 80.3 36 0.00078 31.4 12.5 86 86-174 4-90 (258)
380 TIGR01202 bchC 2-desacetyl-2-h 80.1 8.3 0.00018 37.6 8.4 43 84-127 143-186 (308)
381 PRK08251 short chain dehydroge 80.0 49 0.0011 30.4 13.5 86 86-174 2-90 (248)
382 PRK07889 enoyl-(acyl carrier p 80.0 31 0.00067 32.4 12.0 83 85-173 6-93 (256)
383 cd08294 leukotriene_B4_DH_like 79.9 9.2 0.0002 37.0 8.6 52 80-137 138-191 (329)
384 PRK12859 3-ketoacyl-(acyl-carr 79.9 39 0.00084 31.6 12.6 90 85-177 5-108 (256)
385 PRK07063 short chain dehydroge 79.7 40 0.00086 31.4 12.6 86 85-173 6-94 (260)
386 PRK08213 gluconate 5-dehydroge 79.5 46 0.00099 31.0 13.0 87 85-175 11-99 (259)
387 PRK07806 short chain dehydroge 79.3 49 0.0011 30.5 13.0 85 86-174 6-93 (248)
388 PF06859 Bin3: Bicoid-interact 79.2 1.2 2.7E-05 37.2 1.8 20 205-235 24-43 (110)
389 PRK05876 short chain dehydroge 79.0 43 0.00093 31.9 12.8 86 85-174 5-92 (275)
390 PRK08267 short chain dehydroge 78.8 36 0.00078 31.7 12.1 81 88-174 3-86 (260)
391 PRK06500 short chain dehydroge 78.7 47 0.001 30.4 12.7 82 86-174 6-89 (249)
392 PRK07904 short chain dehydroge 78.6 15 0.00032 34.6 9.3 87 84-173 6-95 (253)
393 PF13561 adh_short_C2: Enoyl-( 78.4 12 0.00027 34.6 8.6 74 96-174 5-82 (241)
394 PRK07890 short chain dehydroge 78.4 56 0.0012 30.2 13.7 85 85-173 4-90 (258)
395 PRK07832 short chain dehydroge 78.2 51 0.0011 31.0 13.0 83 89-173 3-86 (272)
396 PF11968 DUF3321: Putative met 78.1 4.1 8.9E-05 38.3 5.1 131 73-262 31-178 (219)
397 PRK08703 short chain dehydroge 77.8 57 0.0012 29.9 13.1 88 85-174 5-96 (239)
398 PRK09072 short chain dehydroge 77.1 53 0.0012 30.7 12.7 84 86-174 5-89 (263)
399 KOG2912|consensus 77.0 2.6 5.6E-05 41.8 3.6 84 90-178 107-191 (419)
400 PRK08265 short chain dehydroge 76.9 49 0.0011 31.0 12.4 82 86-174 6-89 (261)
401 PRK07478 short chain dehydroge 76.8 63 0.0014 29.9 13.5 86 86-175 6-93 (254)
402 PRK06101 short chain dehydroge 76.8 41 0.00089 31.1 11.7 55 88-148 3-58 (240)
403 PRK07231 fabG 3-ketoacyl-(acyl 76.7 55 0.0012 30.0 12.5 85 86-175 5-91 (251)
404 KOG4174|consensus 76.6 58 0.0012 31.5 12.3 148 85-262 56-214 (282)
405 PRK06935 2-deoxy-D-gluconate 3 76.5 45 0.00098 31.0 12.0 85 85-174 14-100 (258)
406 PRK06198 short chain dehydroge 76.3 52 0.0011 30.5 12.4 86 85-174 5-93 (260)
407 PRK12826 3-ketoacyl-(acyl-carr 76.3 62 0.0014 29.6 13.2 86 86-175 6-93 (251)
408 COG0677 WecC UDP-N-acetyl-D-ma 76.1 26 0.00057 36.0 10.5 36 222-258 114-149 (436)
409 PRK05855 short chain dehydroge 76.1 42 0.00091 35.1 12.8 85 86-174 315-401 (582)
410 PRK12746 short chain dehydroge 76.0 55 0.0012 30.2 12.4 61 86-148 6-68 (254)
411 cd08295 double_bond_reductase_ 75.8 18 0.00038 35.5 9.3 52 81-137 147-200 (338)
412 PRK07024 short chain dehydroge 75.7 56 0.0012 30.4 12.4 82 87-173 3-86 (257)
413 COG3510 CmcI Cephalosporin hyd 75.7 23 0.00051 32.9 9.1 77 68-149 51-131 (237)
414 KOG0022|consensus 75.7 6.4 0.00014 39.2 5.8 57 77-137 184-240 (375)
415 PRK05717 oxidoreductase; Valid 75.5 64 0.0014 30.0 12.7 85 85-176 9-95 (255)
416 cd08283 FDH_like_1 Glutathione 75.5 7.6 0.00017 39.1 6.8 49 80-129 179-228 (386)
417 cd08293 PTGR2 Prostaglandin re 75.2 15 0.00032 35.9 8.6 52 82-137 149-204 (345)
418 PRK06113 7-alpha-hydroxysteroi 75.1 71 0.0015 29.6 13.2 86 85-174 10-97 (255)
419 TIGR01963 PHB_DH 3-hydroxybuty 75.1 68 0.0015 29.4 13.2 83 88-174 3-87 (255)
420 PRK09291 short chain dehydroge 75.0 54 0.0012 30.3 12.1 79 87-174 3-82 (257)
421 smart00359 PUA Putative RNA-bi 74.8 2.7 5.8E-05 31.9 2.5 30 347-376 2-31 (77)
422 cd08237 ribitol-5-phosphate_DH 74.7 5.8 0.00012 39.3 5.5 47 82-128 160-207 (341)
423 PRK05650 short chain dehydroge 74.7 70 0.0015 30.0 12.9 82 88-173 2-85 (270)
424 PLN02740 Alcohol dehydrogenase 74.5 35 0.00076 34.2 11.3 50 81-137 194-246 (381)
425 PRK06505 enoyl-(acyl carrier p 74.4 81 0.0017 30.0 13.6 85 85-173 6-93 (271)
426 PRK07985 oxidoreductase; Provi 74.4 85 0.0018 30.2 13.7 85 85-173 48-136 (294)
427 PRK06194 hypothetical protein; 74.0 58 0.0012 30.8 12.2 86 86-175 6-93 (287)
428 PRK05872 short chain dehydroge 74.0 60 0.0013 31.2 12.4 85 85-174 8-94 (296)
429 PTZ00357 methyltransferase; Pr 73.8 11 0.00024 41.3 7.4 62 88-149 703-776 (1072)
430 KOG2352|consensus 73.8 8 0.00017 40.4 6.4 141 86-256 296-436 (482)
431 PRK12384 sorbitol-6-phosphate 73.7 70 0.0015 29.7 12.5 86 86-174 2-90 (259)
432 PRK12481 2-deoxy-D-gluconate 3 73.7 44 0.00095 31.2 11.1 84 85-174 7-92 (251)
433 cd08239 THR_DH_like L-threonin 73.7 21 0.00046 34.8 9.2 50 81-137 159-211 (339)
434 PRK06128 oxidoreductase; Provi 73.2 91 0.002 30.0 13.8 86 85-174 54-143 (300)
435 TIGR02632 RhaD_aldol-ADH rhamn 72.9 65 0.0014 35.4 13.6 88 85-175 413-503 (676)
436 PRK07814 short chain dehydroge 72.8 81 0.0018 29.5 12.8 85 85-173 9-95 (263)
437 PRK07791 short chain dehydroge 72.6 63 0.0014 31.0 12.1 86 85-174 5-101 (286)
438 TIGR01832 kduD 2-deoxy-D-gluco 72.4 76 0.0017 29.1 12.3 85 85-175 4-90 (248)
439 PRK05875 short chain dehydroge 72.4 86 0.0019 29.4 12.9 86 86-174 7-95 (276)
440 PRK07454 short chain dehydroge 72.3 79 0.0017 28.9 13.0 61 86-148 6-67 (241)
441 PRK12748 3-ketoacyl-(acyl-carr 71.9 78 0.0017 29.4 12.3 86 86-174 5-104 (256)
442 cd08301 alcohol_DH_plants Plan 71.8 44 0.00096 33.2 11.2 49 81-136 183-234 (369)
443 PRK05854 short chain dehydroge 71.8 90 0.0019 30.4 13.2 86 86-174 14-102 (313)
444 PRK05993 short chain dehydroge 71.8 60 0.0013 30.8 11.7 78 86-173 4-84 (277)
445 TIGR03026 NDP-sugDHase nucleot 71.6 26 0.00057 35.8 9.6 34 95-128 7-41 (411)
446 PF07669 Eco57I: Eco57I restri 71.4 10 0.00022 31.3 5.3 69 165-255 2-72 (106)
447 PF02254 TrkA_N: TrkA-N domain 71.2 9.7 0.00021 31.1 5.3 67 94-174 4-71 (116)
448 COG1062 AdhC Zn-dependent alco 71.2 11 0.00023 38.0 6.3 57 77-137 177-233 (366)
449 PLN02989 cinnamyl-alcohol dehy 71.2 67 0.0015 31.1 12.1 80 85-173 4-85 (325)
450 KOG0919|consensus 70.7 3.8 8.2E-05 39.2 2.9 88 87-187 4-94 (338)
451 PRK08628 short chain dehydroge 70.4 91 0.002 28.9 12.6 84 86-174 7-92 (258)
452 KOG1201|consensus 70.1 25 0.00054 34.7 8.5 85 85-173 37-122 (300)
453 TIGR02415 23BDH acetoin reduct 70.0 91 0.002 28.7 12.8 84 89-176 3-88 (254)
454 PRK12743 oxidoreductase; Provi 69.4 97 0.0021 28.8 12.8 84 86-173 2-88 (256)
455 cd08232 idonate-5-DH L-idonate 69.3 39 0.00084 32.8 10.0 49 83-136 163-212 (339)
456 PRK06196 oxidoreductase; Provi 68.8 1E+02 0.0022 29.8 12.9 83 85-175 25-109 (315)
457 PRK13794 hypothetical protein; 68.7 3.5 7.5E-05 43.4 2.5 33 345-377 124-157 (479)
458 cd00401 AdoHcyase S-adenosyl-L 68.5 25 0.00053 36.4 8.6 47 84-135 200-246 (413)
459 cd08278 benzyl_alcohol_DH Benz 68.4 28 0.0006 34.7 8.9 51 81-136 182-233 (365)
460 PRK07984 enoyl-(acyl carrier p 68.4 1.1E+02 0.0024 29.0 13.1 86 85-174 5-93 (262)
461 PF01488 Shikimate_DH: Shikima 68.4 32 0.00069 29.4 8.1 77 84-179 10-86 (135)
462 PRK07792 fabG 3-ketoacyl-(acyl 68.2 1E+02 0.0022 29.9 12.6 85 85-174 11-98 (306)
463 cd05285 sorbitol_DH Sorbitol d 68.1 37 0.00081 33.2 9.6 53 80-137 157-210 (343)
464 PRK07067 sorbitol dehydrogenas 68.1 1E+02 0.0022 28.5 12.5 82 86-174 6-89 (257)
465 PRK13795 hypothetical protein; 67.9 3.6 7.9E-05 44.8 2.5 34 344-377 125-158 (636)
466 PLN03209 translocon at the inn 67.9 40 0.00087 36.4 10.2 83 81-172 75-166 (576)
467 COG0863 DNA modification methy 67.6 13 0.00029 35.7 6.2 49 83-134 220-268 (302)
468 PRK08278 short chain dehydroge 67.2 91 0.002 29.5 11.9 87 85-175 5-100 (273)
469 COG0604 Qor NADPH:quinone redu 67.2 49 0.0011 32.9 10.2 51 81-137 138-190 (326)
470 PRK07370 enoyl-(acyl carrier p 67.0 62 0.0014 30.4 10.6 87 85-174 5-96 (258)
471 PRK08217 fabG 3-ketoacyl-(acyl 67.0 52 0.0011 30.1 9.9 86 85-174 4-91 (253)
472 PRK08303 short chain dehydroge 66.7 1.3E+02 0.0028 29.3 13.6 85 85-173 7-103 (305)
473 PF03141 Methyltransf_29: Puta 66.1 6.4 0.00014 41.3 3.8 19 87-105 367-385 (506)
474 KOG4058|consensus 66.0 12 0.00026 33.3 4.8 64 83-148 70-134 (199)
475 PRK07060 short chain dehydroge 65.9 1E+02 0.0022 28.1 11.6 81 85-177 8-89 (245)
476 PRK06200 2,3-dihydroxy-2,3-dih 65.0 97 0.0021 28.9 11.5 84 85-175 5-90 (263)
477 KOG2793|consensus 64.7 28 0.00062 33.4 7.6 56 76-134 76-132 (248)
478 KOG0023|consensus 64.6 53 0.0011 32.9 9.5 51 83-138 179-230 (360)
479 PRK08063 enoyl-(acyl carrier p 64.6 1.2E+02 0.0025 27.9 13.2 85 86-174 4-91 (250)
480 PRK09135 pteridine reductase; 64.6 1.1E+02 0.0024 27.8 12.8 88 85-174 5-94 (249)
481 PRK08993 2-deoxy-D-gluconate 3 64.5 1.2E+02 0.0026 28.1 12.3 82 86-173 10-93 (253)
482 PLN00015 protochlorophyllide r 64.5 78 0.0017 30.7 11.0 79 93-174 3-84 (308)
483 PLN02586 probable cinnamyl alc 64.3 33 0.00071 34.2 8.5 49 83-136 181-230 (360)
484 PRK05866 short chain dehydroge 64.3 1.4E+02 0.003 28.7 13.6 84 86-173 40-125 (293)
485 PRK06077 fabG 3-ketoacyl-(acyl 64.3 1.2E+02 0.0025 27.8 12.9 87 86-175 6-94 (252)
486 cd08300 alcohol_DH_class_III c 63.6 92 0.002 30.9 11.6 52 81-137 182-234 (368)
487 PLN02780 ketoreductase/ oxidor 63.5 1.6E+02 0.0034 29.0 13.8 61 85-146 52-114 (320)
488 PLN02896 cinnamyl-alcohol dehy 63.2 1.3E+02 0.0028 29.6 12.5 81 86-177 10-91 (353)
489 COG5379 BtaA S-adenosylmethion 62.8 15 0.00032 36.3 5.2 69 62-133 39-108 (414)
490 PLN02353 probable UDP-glucose 62.6 88 0.0019 32.9 11.5 39 89-129 4-45 (473)
491 PRK08264 short chain dehydroge 62.3 1.2E+02 0.0027 27.5 11.6 74 86-173 6-81 (238)
492 PRK06138 short chain dehydroge 62.1 1.3E+02 0.0028 27.6 12.8 85 86-175 5-91 (252)
493 KOG0821|consensus 62.0 16 0.00034 34.7 5.1 62 84-148 49-110 (326)
494 PRK06057 short chain dehydroge 61.8 1.1E+02 0.0024 28.4 11.1 81 85-174 6-88 (255)
495 cd08234 threonine_DH_like L-th 61.6 1.3E+02 0.0028 28.9 12.0 47 80-127 154-201 (334)
496 KOG1205|consensus 61.5 49 0.0011 32.4 8.7 91 85-177 11-103 (282)
497 cd08236 sugar_DH NAD(P)-depend 61.4 1.2E+02 0.0026 29.4 11.8 52 80-136 154-206 (343)
498 PLN02178 cinnamyl-alcohol dehy 61.3 42 0.00091 33.8 8.7 48 84-137 177-226 (375)
499 PRK09186 flagellin modificatio 60.7 1.4E+02 0.003 27.5 12.7 85 86-173 4-91 (256)
500 PRK07035 short chain dehydroge 60.7 1.4E+02 0.003 27.5 13.5 84 86-173 8-93 (252)
No 1
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.4e-50 Score=398.57 Aligned_cols=234 Identities=38% Similarity=0.602 Sum_probs=197.7
Q ss_pred cceEEEEccccccCCCcccCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCc-EEEEEeCCHHH
Q psy17793 44 RGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTG-TLIALDKSKPR 122 (397)
Q Consensus 44 ~gi~v~~~~~~~~~p~~~~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~-~V~avD~s~~r 122 (397)
.++.++...++...|. +..|++++||.+||+++.+|++++|++||||||||||||+|+|++|.+.+ .|+|+|+|+.|
T Consensus 117 ~~~~i~~~~~~~~~~~--~~~G~~~vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~R 194 (355)
T COG0144 117 EVLRIEASGPIGRLPE--FAEGLIYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKR 194 (355)
T ss_pred cEEEecCCCCcccChh--hhceEEEEcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHH
Confidence 3444455555555553 67999999999999999999999999999999999999999999998744 45999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCC---CcccccccCccchHHHHHH
Q psy17793 123 VTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQ---RPMFYNANSFLNLDKKIKS 199 (397)
Q Consensus 123 l~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~---~p~~~~~~s~~~~~~~~~~ 199 (397)
++.+++|++|+|+.|+.+++.|+..+... ....++||+||+||||||+|+ +|+..+.++ ..++..
T Consensus 195 l~~l~~nl~RlG~~nv~~~~~d~~~~~~~--------~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~----~~~i~~ 262 (355)
T COG0144 195 LKRLRENLKRLGVRNVIVVNKDARRLAEL--------LPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRT----PEDIAE 262 (355)
T ss_pred HHHHHHHHHHcCCCceEEEeccccccccc--------ccccCcCcEEEECCCCCCCcccccCccccccCC----HHHHHH
Confidence 99999999999999999999998766321 012235999999999999994 799999999 899999
Q ss_pred HHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCccccHHHHHHHHHHCCCcEEEecCcccCCCCCccCCCch
Q psy17793 200 YANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEA 279 (397)
Q Consensus 200 l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~~~~~~~~~g~~~~~~~~ 279 (397)
++.+|++||.+ |+++|||||+|||||||+++||||+||.++|++++++++++....++. +....+
T Consensus 263 l~~lQ~~iL~~-----------a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~~~~~~~~~~~~~~~~-~~~~~~--- 327 (355)
T COG0144 263 LAKLQKEILAA-----------ALKLLKPGGVLVYSTCSLTPEENEEVVERFLERHPDFELEPVRLPWGP-LFEGLG--- 327 (355)
T ss_pred HHHHHHHHHHH-----------HHHhcCCCCEEEEEccCCchhcCHHHHHHHHHhCCCceeecccccccc-cccccc---
Confidence 99999999999 999999999999999999999999999999999999999987655443 222111
Q ss_pred hhhcceEEeCCCCCCCCCCCCCCcEEEEeeecc
Q psy17793 280 EDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKK 312 (397)
Q Consensus 280 ~~~~~~~r~~P~~~t~~~~~~t~GFFiA~l~K~ 312 (397)
.....+.|++|+ .+.|+|||+|+|+|.
T Consensus 328 ~~~~~~~r~~p~------~~~~dGFFia~l~k~ 354 (355)
T COG0144 328 SELGKTRRLYPH------VHGTDGFFIAKLRKK 354 (355)
T ss_pred cccCCeEEECCC------CCCCCCeEEEEEEeC
Confidence 123467899885 567799999999985
No 2
>KOG1122|consensus
Probab=100.00 E-value=1.6e-50 Score=396.95 Aligned_cols=239 Identities=38% Similarity=0.598 Sum_probs=210.5
Q ss_pred ceEEEEccccccCCCcc-cCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHH
Q psy17793 45 GVAVEITNVLSQVPNVA-LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRV 123 (397)
Q Consensus 45 gi~v~~~~~~~~~p~~~-~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl 123 (397)
++.+.+...++.+|... ++.|++.+|+.+|.+++++|+|+||++||||||||||||+|+|++|+++|.|+|+|.+..|+
T Consensus 200 ~vgl~v~~s~vpigat~e~lag~~~LQ~~sS~Lpv~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~ 279 (460)
T KOG1122|consen 200 KVGLVVFDSVVPIGATPEYLAGHYMLQNASSFLPVMALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRL 279 (460)
T ss_pred cceEEEecCccccCCchhhcccceeeccCcccceeeecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHH
Confidence 46677777788888887 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCC---CcccccccCccchHHHHHHH
Q psy17793 124 TKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQ---RPMFYNANSFLNLDKKIKSY 200 (397)
Q Consensus 124 ~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~---~p~~~~~~s~~~~~~~~~~l 200 (397)
+.+++|+.++|++|..+.+.|...+... .+. ++||+||+||||||+|. .+...+..+ .+.+.++
T Consensus 280 ~~l~~n~~rlGv~ntiv~n~D~~ef~~~--------~~~-~~fDRVLLDAPCSGtgvi~K~~~vkt~k~----~~di~~~ 346 (460)
T KOG1122|consen 280 KSLKANLHRLGVTNTIVSNYDGREFPEK--------EFP-GSFDRVLLDAPCSGTGVISKDQSVKTNKT----VKDILRY 346 (460)
T ss_pred HHHHHHHHHhCCCceEEEccCccccccc--------ccC-cccceeeecCCCCCCcccccccccccchh----HHHHHHh
Confidence 9999999999999999999999876422 133 38999999999999883 344444444 5899999
Q ss_pred HHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCccccHHHHHHHHHHCCCcEEEecCcccCCCCCccCCCchh
Q psy17793 201 ANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAE 280 (397)
Q Consensus 201 ~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~~~~~~~~~g~~~~~~~~~ 280 (397)
..+|++||.+ |++++|+||+|||||||+.++|||+||+++|.++|+++++|..+.+|.+|....+....
T Consensus 347 ~~LQr~Llls-----------Ai~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~K~p~~kL~p~~~~iG~~G~~~~~~~~p 415 (460)
T KOG1122|consen 347 AHLQRELLLS-----------AIDLVKAGGVLVYSTCSITVEENEAVVDYALKKRPEVKLVPTGLDIGGEGRFRGGRFHP 415 (460)
T ss_pred HHHHHHHHHH-----------HHhhccCCcEEEEEeeecchhhhHHHHHHHHHhCCceEeccccccCCCCCcccCcccCc
Confidence 9999999999 99999999999999999999999999999999999999999999999988333333333
Q ss_pred hhcceEEeCCCCCCCCCCCCCCcEEEEeeeccc
Q psy17793 281 DQAVMQRFGPPLIPTDRNTDTIGFFICKLRKKY 313 (397)
Q Consensus 281 ~~~~~~r~~P~~~t~~~~~~t~GFFiA~l~K~~ 313 (397)
..+..+||+|+ .|.++|||+|+|+|..
T Consensus 416 sl~~~~r~yPh------~hnmdgffvaKl~k~s 442 (460)
T KOG1122|consen 416 SLKLTRRFYPH------VHNMDGFFVAKLKKAS 442 (460)
T ss_pred chhheeeecCc------ccCCchHHHHHHHhhc
Confidence 45567899885 7899999999999976
No 3
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=100.00 E-value=2.3e-47 Score=391.55 Aligned_cols=215 Identities=36% Similarity=0.510 Sum_probs=187.1
Q ss_pred cCCCcEEEechhHHHHHhcc--CCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEE
Q psy17793 62 LDSSMGILQNLPSILAGHYL--DVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQ 139 (397)
Q Consensus 62 ~~~g~~~~Qd~~S~l~~~~L--~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~ 139 (397)
+..|+|++||++||+++.+| ++++|++|||+||||||||+|+|++|++.|.|+|+|+++.|++.+++|++++|+.||.
T Consensus 88 ~~~G~~yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~ 167 (470)
T PRK11933 88 HLSGLFYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVA 167 (470)
T ss_pred HHCCcEEEECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEE
Confidence 68999999999999999999 8899999999999999999999999998999999999999999999999999999999
Q ss_pred EEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCC---CCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhc
Q psy17793 140 THVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVS 216 (397)
Q Consensus 140 ~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G---~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~ 216 (397)
+.+.|+..+.. ...+.||+||+||||||+| ++|+..+.|+ .+.+..++.+|++||.+
T Consensus 168 v~~~D~~~~~~----------~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s----~~~v~~l~~lQ~~iL~~------ 227 (470)
T PRK11933 168 LTHFDGRVFGA----------ALPETFDAILLDAPCSGEGTVRKDPDALKNWS----PESNLEIAATQRELIES------ 227 (470)
T ss_pred EEeCchhhhhh----------hchhhcCeEEEcCCCCCCcccccCHHHhhhCC----HHHHHHHHHHHHHHHHH------
Confidence 99999886531 1235799999999999999 4789999999 89999999999999999
Q ss_pred cccccccccccCCcEEEEEecCCCccccHHHHHHHHHHCCC-cEEEecCcccCCCCCccCCCchhhhcceEEeCCCCCCC
Q psy17793 217 LFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPE-VELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPT 295 (397)
Q Consensus 217 ~~~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~-~~l~~~~~~~~~~g~~~~~~~~~~~~~~~r~~P~~~t~ 295 (397)
|+++|||||+|||||||++++|||+||+++|++|++ ++++++...+. +... .. ....+.|++|+
T Consensus 228 -----A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~~~~~~~~~~~~~~~~--~~~~-~~---~~~~~~r~~P~---- 292 (470)
T PRK11933 228 -----AFHALKPGGTLVYSTCTLNREENQAVCLWLKETYPDAVEFEPLGDLFP--GAEK-AL---TEEGFLHVFPQ---- 292 (470)
T ss_pred -----HHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHHCCCcEEecccccccc--cccc-cc---CCCCeEEECCC----
Confidence 999999999999999999999999999999999987 45555532221 1110 00 12246889995
Q ss_pred CCCCCCCcEEEEeeeccc
Q psy17793 296 DRNTDTIGFFICKLRKKY 313 (397)
Q Consensus 296 ~~~~~t~GFFiA~l~K~~ 313 (397)
.++++|||+|+|+|..
T Consensus 293 --~~~~dGfFiA~lrk~~ 308 (470)
T PRK11933 293 --IYDSEGFFVARLRKTA 308 (470)
T ss_pred --CCCCcceeeEEEEecC
Confidence 5789999999999975
No 4
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=100.00 E-value=1.3e-47 Score=372.03 Aligned_cols=215 Identities=40% Similarity=0.606 Sum_probs=188.7
Q ss_pred cCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEE
Q psy17793 62 LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTH 141 (397)
Q Consensus 62 ~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~ 141 (397)
+++|++++||++|++++.+|.+++|+.|||+||||||||+++|++|.+.|.|+|+|+++.|++.+++|++++|+.++.+.
T Consensus 62 ~~~G~~~vQd~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~ 141 (283)
T PF01189_consen 62 FKNGLFYVQDESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVI 141 (283)
T ss_dssp HHTTSEEEHHHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEE
T ss_pred hhCCcEEecccccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEE
Confidence 68999999999999999999999999999999999999999999999899999999999999999999999999999999
Q ss_pred EcccccccccchhhHHHhhhcccCccEEEEcCCCCCCC---CCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccc
Q psy17793 142 VYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLF 218 (397)
Q Consensus 142 ~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G---~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~ 218 (397)
..|++.... ......||+||+||||||+| ++|+..+.++ .+.+..++.+|++||++
T Consensus 142 ~~D~~~~~~---------~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~----~~~~~~l~~~Q~~iL~~-------- 200 (283)
T PF01189_consen 142 NADARKLDP---------KKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRS----PEDIEKLAELQREILDN-------- 200 (283)
T ss_dssp ESHHHHHHH---------HHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-----TTHHHHHHHHHHHHHHH--------
T ss_pred eeccccccc---------cccccccchhhcCCCccchhhhhhccchhhccc----ccccchHHHHHHHHHHH--------
Confidence 888877631 12334699999999999999 4888888888 79999999999999999
Q ss_pred cccccccc----cCCcEEEEEecCCCccccHHHHHHHHHHCCCcEEEecCcccCCCCCccCCCchhhhcceEEeCCCCCC
Q psy17793 219 DWQGIPLL----KKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIP 294 (397)
Q Consensus 219 ~~~a~~lL----kpgG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~r~~P~~~t 294 (397)
|++++ ||||++||||||++++|||+||+++|+++++++++++....+..++... .....+.|++|+
T Consensus 201 ---a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~r~~P~--- 270 (283)
T PF01189_consen 201 ---AAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRHPDFELVPIPLPEPPPGFKSY----PIGEGCLRILPH--- 270 (283)
T ss_dssp ---HHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHSTSEEEECCESSTCEEESSGG----CTGGGSEEESTT---
T ss_pred ---HHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccc----cCCCCEEEeCCC---
Confidence 99999 9999999999999999999999999999999999987655443333221 123457899995
Q ss_pred CCCCCCCCcEEEEeee
Q psy17793 295 TDRNTDTIGFFICKLR 310 (397)
Q Consensus 295 ~~~~~~t~GFFiA~l~ 310 (397)
.++++|||+|+||
T Consensus 271 ---~~~~dGFFiA~lr 283 (283)
T PF01189_consen 271 ---RHGTDGFFIAKLR 283 (283)
T ss_dssp ---TSSSSSEEEEEEE
T ss_pred ---CCCCCCEEEEEeC
Confidence 6899999999996
No 5
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=100.00 E-value=2.3e-44 Score=346.40 Aligned_cols=214 Identities=35% Similarity=0.526 Sum_probs=183.5
Q ss_pred cCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEE
Q psy17793 62 LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTH 141 (397)
Q Consensus 62 ~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~ 141 (397)
+..|++++||.+|++++.+|++++|++|||+|||||+||+++|+++++.+.|+|+|+++.+++.+++|++++|+.+|+++
T Consensus 48 ~~~G~~~~qd~~s~~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~ 127 (264)
T TIGR00446 48 YLSGLYYIQEASSMIPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVT 127 (264)
T ss_pred HhCCeEEEECHHHHHHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEe
Confidence 68999999999999999999999999999999999999999999998888999999999999999999999999999999
Q ss_pred EcccccccccchhhHHHhhhcccCccEEEEcCCCCCCC---CCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccc
Q psy17793 142 VYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLF 218 (397)
Q Consensus 142 ~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G---~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~ 218 (397)
..|+..+. ...+.||+||+||||||+| .+|+..+.++ .+.+..++..|+++|++
T Consensus 128 ~~D~~~~~-----------~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~----~~~~~~l~~~q~~iL~~-------- 184 (264)
T TIGR00446 128 NFDGRVFG-----------AAVPKFDAILLDAPCSGEGVIRKDPSRKKNWS----EEDIQEISALQKELIDS-------- 184 (264)
T ss_pred cCCHHHhh-----------hhccCCCEEEEcCCCCCCcccccChhhhhcCC----HHHHHHHHHHHHHHHHH--------
Confidence 99987652 1234699999999999999 4788888888 79999999999999999
Q ss_pred cccccccccCCcEEEEEecCCCccccHHHHHHHHHHCCCcEEEecCcccCCCCCccCCCchhhhcceEEeCCCCCCCCCC
Q psy17793 219 DWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRN 298 (397)
Q Consensus 219 ~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~r~~P~~~t~~~~ 298 (397)
|+++|||||+|||||||++++|||+||+++|++++++.+.+.. +.+...... .......+.|++|+ .
T Consensus 185 ---a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~r~~P~------~ 251 (264)
T TIGR00446 185 ---AFDALKPGGVLVYSTCSLEPEENEAVVDYLLEKRPDVVEELPK---GDEFFGANK-GKEEVKGALRVFPQ------I 251 (264)
T ss_pred ---HHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHhCCCcEEeccC---Ccccccccc-cccccCCeEEECCC------C
Confidence 9999999999999999999999999999999999988766322 111110000 00012347888885 5
Q ss_pred CCCCcEEEEeeec
Q psy17793 299 TDTIGFFICKLRK 311 (397)
Q Consensus 299 ~~t~GFFiA~l~K 311 (397)
++|+|||+|+|+|
T Consensus 252 ~~~dGfF~a~l~k 264 (264)
T TIGR00446 252 YDCEGFFVAKLRK 264 (264)
T ss_pred CCCCcEEEEEEEC
Confidence 7899999999986
No 6
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=2.6e-41 Score=345.73 Aligned_cols=214 Identities=31% Similarity=0.557 Sum_probs=183.6
Q ss_pred cCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEE
Q psy17793 62 LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTH 141 (397)
Q Consensus 62 ~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~ 141 (397)
+.+|++++||.+|++++.++++++|++|||+|||||+||+++|.+++++++|+|+|+++.|++.+++|++++|++++++.
T Consensus 214 ~~~G~~~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~ 293 (431)
T PRK14903 214 IKDGLATVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIK 293 (431)
T ss_pred HHCCeEEEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEE
Confidence 78999999999999999999999999999999999999999999998889999999999999999999999999889999
Q ss_pred EcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCC---CcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccc
Q psy17793 142 VYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQ---RPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLF 218 (397)
Q Consensus 142 ~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~---~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~ 218 (397)
..|+..+. .+..++||+|++||||||+|. +|+..+.++ .+.+..++.+|+++|.+
T Consensus 294 ~~Da~~l~----------~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~----~~~~~~l~~~Q~~iL~~-------- 351 (431)
T PRK14903 294 IADAERLT----------EYVQDTFDRILVDAPCTSLGTARNHPEVLRRVN----KEDFKKLSEIQLRIVSQ-------- 351 (431)
T ss_pred ECchhhhh----------hhhhccCCEEEECCCCCCCccccCChHHHHhCC----HHHHHHHHHHHHHHHHH--------
Confidence 99987652 123467999999999999994 788888888 79999999999999999
Q ss_pred cccccccccCCcEEEEEecCCCccccHHHHHHHHHHCCCcEEEecCcccCCCCCccCCCchhhhcceEEeCCCCCCCCCC
Q psy17793 219 DWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRN 298 (397)
Q Consensus 219 ~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~r~~P~~~t~~~~ 298 (397)
++++|||||+|||||||++++|||++|+++|++||++++++....+...+.+ +.. ... . .|+.|+
T Consensus 352 ---a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~~~~~~~~~~~~~~~~~~~~--~~~-~~~-~-~~~~P~------- 416 (431)
T PRK14903 352 ---AWKLLEKGGILLYSTCTVTKEENTEVVKRFVYEQKDAEVIDIRDKLEEFEVE--GIW-DGY-G-FLMLPD------- 416 (431)
T ss_pred ---HHHhcCCCCEEEEEECCCChhhCHHHHHHHHHhCCCcEEecccccccccccc--ccc-CCC-c-EEECcC-------
Confidence 9999999999999999999999999999999999999887653211110111 000 011 1 477784
Q ss_pred CCCCcEEEEeeecc
Q psy17793 299 TDTIGFFICKLRKK 312 (397)
Q Consensus 299 ~~t~GFFiA~l~K~ 312 (397)
+.++|||+|+|+|.
T Consensus 417 ~~~dGFf~a~L~k~ 430 (431)
T PRK14903 417 ETLTPFYVSVLRKM 430 (431)
T ss_pred CCCCcEEEEEEEeC
Confidence 36899999999986
No 7
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=9.4e-41 Score=342.36 Aligned_cols=202 Identities=43% Similarity=0.638 Sum_probs=179.8
Q ss_pred cCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEE
Q psy17793 62 LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTH 141 (397)
Q Consensus 62 ~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~ 141 (397)
+.+|++++||++|++++.++++++|++|||+|||||+||+++|.++++.++|+|+|+++.|++.+++|++++|+++|+++
T Consensus 229 f~~g~~~~qd~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~ 308 (434)
T PRK14901 229 YEEGWWTVQDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKIL 308 (434)
T ss_pred HhCCeEEEECHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 67999999999999999999999999999999999999999999988889999999999999999999999999999999
Q ss_pred EcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCC---CcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccc
Q psy17793 142 VYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQ---RPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLF 218 (397)
Q Consensus 142 ~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~---~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~ 218 (397)
+.|+...... ..+..++||+|++||||||+|. +|+..+.++ ++.+..++.+|.++|.+
T Consensus 309 ~~D~~~~~~~-------~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~----~~~~~~l~~~Q~~iL~~-------- 369 (434)
T PRK14901 309 AADSRNLLEL-------KPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQT----PEKIQELAPLQAELLES-------- 369 (434)
T ss_pred eCChhhcccc-------cccccccCCEEEEeCCCCcccccccCcchhhhCC----HHHHHHHHHHHHHHHHH--------
Confidence 9999865311 0012467999999999999993 788888888 79999999999999999
Q ss_pred cccccccccCCcEEEEEecCCCccccHHHHHHHHHHCCCcEEEecCcccCCCCCccCCCchhhhcceEEeCCCCCCCCCC
Q psy17793 219 DWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRN 298 (397)
Q Consensus 219 ~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~r~~P~~~t~~~~ 298 (397)
++++|||||+|||||||++++|||++|.++|++||++++.+. + .+++|+ .
T Consensus 370 ---a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~~~~~~~-------~--------------~~~~P~------~ 419 (434)
T PRK14901 370 ---LAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHPDWKLEPP-------K--------------QKIWPH------R 419 (434)
T ss_pred ---HHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCCcEecCC-------C--------------CccCCC------C
Confidence 999999999999999999999999999999999999886531 0 014564 6
Q ss_pred CCCCcEEEEeeecc
Q psy17793 299 TDTIGFFICKLRKK 312 (397)
Q Consensus 299 ~~t~GFFiA~l~K~ 312 (397)
++|||||+|+|+|.
T Consensus 420 ~~~dGfF~a~l~k~ 433 (434)
T PRK14901 420 QDGDGFFMAVLRKK 433 (434)
T ss_pred CCCCcEEEEEEEeC
Confidence 78999999999986
No 8
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=100.00 E-value=8.2e-40 Score=334.75 Aligned_cols=207 Identities=34% Similarity=0.503 Sum_probs=175.8
Q ss_pred cCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEE-
Q psy17793 62 LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQT- 140 (397)
Q Consensus 62 ~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~- 140 (397)
+.+|++++||.+|++++..|++++|++|||+|||||+||++++.+++ .++|+|+|+++.+++.+++|++++|+. +.+
T Consensus 215 ~~~G~~~~Qd~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~-~~v~ 292 (426)
T TIGR00563 215 FEEGWVTVQDASAQWVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLT-IKAE 292 (426)
T ss_pred hhCCeEEEECHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCC-eEEE
Confidence 78999999999999999999999999999999999999999999885 789999999999999999999999987 444
Q ss_pred -EEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCC---CcccccccCccchHHHHHHHHHHHHHHHHHHhhhhc
Q psy17793 141 -HVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQ---RPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVS 216 (397)
Q Consensus 141 -~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~---~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~ 216 (397)
..+|...... ....++||+|++||||||+|. +|++.+.++ ++++..++.+|+++|.+
T Consensus 293 ~~~~d~~~~~~---------~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~----~~~~~~l~~lQ~~lL~~------ 353 (426)
T TIGR00563 293 TKDGDGRGPSQ---------WAENEQFDRILLDAPCSATGVIRRHPDIKWLRK----PRDIAELAELQSEILDA------ 353 (426)
T ss_pred Eeccccccccc---------cccccccCEEEEcCCCCCCcccccCcchhhcCC----HHHHHHHHHHHHHHHHH------
Confidence 5555543310 013467999999999999994 799988888 79999999999999999
Q ss_pred cccccccccccCCcEEEEEecCCCccccHHHHHHHHHHCCCcEEEecCcccCCCCCccCCCchhhhcceEEeCCCCCCCC
Q psy17793 217 LFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTD 296 (397)
Q Consensus 217 ~~~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~r~~P~~~t~~ 296 (397)
|+++|||||+|||||||++++|||++|+++|++||++.+.... ... .. .....|+.|+
T Consensus 354 -----a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~~~-------~~~-~~----~~~~~~~~P~----- 411 (426)
T TIGR00563 354 -----IWPLLKTGGTLVYATCSVLPEENSEQIKAFLQEHPDFPFEKTG-------TPE-QV----RDGGLQILPH----- 411 (426)
T ss_pred -----HHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHhCCCCeeccCC-------Ccc-cc----CCCcEEECCC-----
Confidence 9999999999999999999999999999999999988764321 000 00 1124688885
Q ss_pred CCCCCCcEEEEeeecc
Q psy17793 297 RNTDTIGFFICKLRKK 312 (397)
Q Consensus 297 ~~~~t~GFFiA~l~K~ 312 (397)
.++|+|||+|+|+|.
T Consensus 412 -~~~~dGff~a~l~k~ 426 (426)
T TIGR00563 412 -AEEGDGFFYAKLIKK 426 (426)
T ss_pred -CCCCCCeEEEEEEeC
Confidence 578999999999873
No 9
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=8.4e-39 Score=328.92 Aligned_cols=214 Identities=34% Similarity=0.464 Sum_probs=184.2
Q ss_pred cCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEE
Q psy17793 62 LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTH 141 (397)
Q Consensus 62 ~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~ 141 (397)
+..|.+++||++|++++.++++.+|++|||+|||||+||+++++.+++.++|+|+|+|+.+++.+++|++++|+.+|++.
T Consensus 227 ~~~G~~~vqd~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~ 306 (445)
T PRK14904 227 LKLGLVSVQNPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETI 306 (445)
T ss_pred HhCcEEEEeCHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEE
Confidence 68999999999999999999999999999999999999999999887778999999999999999999999999899999
Q ss_pred EcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCC---CcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccc
Q psy17793 142 VYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQ---RPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLF 218 (397)
Q Consensus 142 ~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~---~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~ 218 (397)
++|+..+. ..+.||+|++||||||+|. +|+..+.++ .+.+..++..|.++|.+
T Consensus 307 ~~Da~~~~------------~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~----~~~~~~l~~~q~~iL~~-------- 362 (445)
T PRK14904 307 EGDARSFS------------PEEQPDAILLDAPCTGTGVLGRRAELRWKLT----PEKLAELVGLQAELLDH-------- 362 (445)
T ss_pred eCcccccc------------cCCCCCEEEEcCCCCCcchhhcCcchhhcCC----HHHHHHHHHHHHHHHHH--------
Confidence 99997652 2357999999999999993 788888888 79999999999999999
Q ss_pred cccccccccCCcEEEEEecCCCccccHHHHHHHHHHCCCcEEEecCcccCCCCCccCCCchhhhcceEEeCCCCCCCCCC
Q psy17793 219 DWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRN 298 (397)
Q Consensus 219 ~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~r~~P~~~t~~~~ 298 (397)
+.++|||||+|+|+|||++++|||++|+++|++|+++++++....+... +. .... ...+.|++|+ .
T Consensus 363 ---a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~~~~~l~~~-~~-~~~~---~~~~~~~~P~------~ 428 (445)
T PRK14904 363 ---AASLLKPGGVLVYATCSIEPEENELQIEAFLQRHPEFSAEPSPGSLPEP-FH-EVAH---PKGAILTLPG------E 428 (445)
T ss_pred ---HHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCCCCEEeccccccccc-cc-cccC---CCCcEEECCC------C
Confidence 9999999999999999999999999999999999998876643222110 00 0000 1224678885 3
Q ss_pred C-CCCcEEEEeeeccc
Q psy17793 299 T-DTIGFFICKLRKKY 313 (397)
Q Consensus 299 ~-~t~GFFiA~l~K~~ 313 (397)
+ ++||||+|+|+|..
T Consensus 429 ~~~~dGfF~a~l~k~~ 444 (445)
T PRK14904 429 HEGFDGGFAQRLRKNA 444 (445)
T ss_pred CCCCCcEEEEEEEecC
Confidence 4 78999999999974
No 10
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=5e-38 Score=323.16 Aligned_cols=214 Identities=40% Similarity=0.637 Sum_probs=186.2
Q ss_pred cCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEE
Q psy17793 62 LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTH 141 (397)
Q Consensus 62 ~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~ 141 (397)
+.+|.+++||.+|++++.++++++|++|||+|||||++|++++..+++.++|+|+|+++.+++.+++|++++|+.+|+++
T Consensus 227 ~~~G~~~~qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~ 306 (444)
T PRK14902 227 FKDGLITIQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETK 306 (444)
T ss_pred HhCceEEEEChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 68999999999999999999999999999999999999999999887778999999999999999999999999889999
Q ss_pred EcccccccccchhhHHHhhhcccCccEEEEcCCCCCCC---CCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccc
Q psy17793 142 VYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLF 218 (397)
Q Consensus 142 ~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G---~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~ 218 (397)
++|+...... +. +.||+|++||||||+| .+|+..+.++ ...+..+..+|.++|.+
T Consensus 307 ~~D~~~~~~~---------~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~----~~~~~~l~~~q~~iL~~-------- 364 (444)
T PRK14902 307 ALDARKVHEK---------FA-EKFDKILVDAPCSGLGVIRRKPDIKYNKT----KEDIESLQEIQLEILES-------- 364 (444)
T ss_pred eCCcccccch---------hc-ccCCEEEEcCCCCCCeeeccCcchhhcCC----HHHHHHHHHHHHHHHHH--------
Confidence 9999775311 22 6799999999999999 3788888887 78999999999999999
Q ss_pred cccccccccCCcEEEEEecCCCccccHHHHHHHHHHCCCcEEEecCcccCCCCCccCCCchhhhcceEEeCCCCCCCCCC
Q psy17793 219 DWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRN 298 (397)
Q Consensus 219 ~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~r~~P~~~t~~~~ 298 (397)
+.++|||||+|||||||++++|||++|.++++++++++++++....+.. . ... ....+.|++|+ .
T Consensus 365 ---a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~~~~~~~~~~~-~-~~~----~~~~~~r~~P~------~ 429 (444)
T PRK14902 365 ---VAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHPEFELVPLQHEKPDE-L-VYE----VKDGYLQILPN------D 429 (444)
T ss_pred ---HHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCCCcEEeccccccccc-c-ccc----ccCCeEEECCC------C
Confidence 9999999999999999999999999999999999999998865432211 0 000 12346789885 6
Q ss_pred CCCCcEEEEeeecc
Q psy17793 299 TDTIGFFICKLRKK 312 (397)
Q Consensus 299 ~~t~GFFiA~l~K~ 312 (397)
++|+|||+|+|+|.
T Consensus 430 ~~~dGfF~a~l~k~ 443 (444)
T PRK14902 430 YGTDGFFIAKLRKK 443 (444)
T ss_pred CCCCCeEEEEEEEC
Confidence 78999999999986
No 11
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=2e-37 Score=317.17 Aligned_cols=204 Identities=36% Similarity=0.525 Sum_probs=177.6
Q ss_pred cCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEE
Q psy17793 62 LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTH 141 (397)
Q Consensus 62 ~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~ 141 (397)
++.|++++||.+|++++..+++++|++|||+|||||++|+++++.+.+ ++|+|+|+++.+++.+++|++++|+. ++++
T Consensus 221 ~~~G~~~iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~-~~~~ 298 (427)
T PRK10901 221 FAEGWVSVQDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLK-ATVI 298 (427)
T ss_pred hhCceEEEECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCC-eEEE
Confidence 679999999999999999999999999999999999999999998743 79999999999999999999999986 6889
Q ss_pred EcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCC---CcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccc
Q psy17793 142 VYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQ---RPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLF 218 (397)
Q Consensus 142 ~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~---~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~ 218 (397)
++|+..... .+..++||.|++||||||+|. +|++.+.++ ...+..+...|+++|.+
T Consensus 299 ~~D~~~~~~---------~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~----~~~l~~l~~~q~~iL~~-------- 357 (427)
T PRK10901 299 VGDARDPAQ---------WWDGQPFDRILLDAPCSATGVIRRHPDIKWLRR----PEDIAALAALQSEILDA-------- 357 (427)
T ss_pred EcCcccchh---------hcccCCCCEEEECCCCCcccccccCccccccCC----HHHHHHHHHHHHHHHHH--------
Confidence 999876421 123467999999999999993 788877777 78899999999999999
Q ss_pred cccccccccCCcEEEEEecCCCccccHHHHHHHHHHCCCcEEEecCcccCCCCCccCCCchhhhcceEEeCCCCCCCCCC
Q psy17793 219 DWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRN 298 (397)
Q Consensus 219 ~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~r~~P~~~t~~~~ 298 (397)
+.++|||||+++|||||++++|||++|.+++++++++++++... .+ ....|+.|+ .
T Consensus 358 ---a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~~~~----~~-----------~~~~~~~P~------~ 413 (427)
T PRK10901 358 ---LWPLLKPGGTLLYATCSILPEENEQQIKAFLARHPDAELLDTGT----PQ-----------QPGRQLLPG------E 413 (427)
T ss_pred ---HHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHhCCCCEEecCCC----CC-----------CCceEECCC------C
Confidence 99999999999999999999999999999999999998876321 00 112577784 6
Q ss_pred CCCCcEEEEeeecc
Q psy17793 299 TDTIGFFICKLRKK 312 (397)
Q Consensus 299 ~~t~GFFiA~l~K~ 312 (397)
++++|||+|+|+|+
T Consensus 414 ~~~dGff~a~l~k~ 427 (427)
T PRK10901 414 EDGDGFFYALLIKR 427 (427)
T ss_pred CCCCCeEEEEEEEC
Confidence 78999999999985
No 12
>KOG2198|consensus
Probab=100.00 E-value=7.6e-34 Score=276.96 Aligned_cols=195 Identities=33% Similarity=0.456 Sum_probs=157.8
Q ss_pred ccccCCCcc---cCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCC---CcEEEEEeCCHHHHHHH
Q psy17793 53 VLSQVPNVA---LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMND---TGTLIALDKSKPRVTKL 126 (397)
Q Consensus 53 ~~~~~p~~~---~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~---~~~V~avD~s~~rl~~l 126 (397)
++.++|.+- ..-|.++.||.+|++++.+|+++||++|||||||||+||+++.+.+.. .|.|+|+|.+..|+..+
T Consensus 120 ~l~rf~~fl~~e~~vg~i~rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L 199 (375)
T KOG2198|consen 120 PLSRFHGFLKLETGVGNIYRQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNML 199 (375)
T ss_pred chhhcchHhhhhcccccchhhhhhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHH
Confidence 344455543 456889999999999999999999999999999999999999887653 46999999999999999
Q ss_pred HHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCC---Ccccccc-cCccchHHHHHHHHH
Q psy17793 127 EETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQ---RPMFYNA-NSFLNLDKKIKSYAN 202 (397)
Q Consensus 127 ~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~---~p~~~~~-~s~~~~~~~~~~l~~ 202 (397)
...++++...++.+...|+..+......+. .......||+||||+||||.|. .+++... |+ ...-..+..
T Consensus 200 ~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~--~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~----~~~~~~L~~ 273 (375)
T KOG2198|consen 200 VHQLKRLPSPNLLVTNHDASLFPNIYLKDG--NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWK----TQRALGLHA 273 (375)
T ss_pred HHHHhccCCcceeeecccceeccccccccC--chhhhhhcceeEEecccCCCcccccCchHhhhhhh----hhhccCChH
Confidence 999988887778888888766532100010 1123467999999999999994 5555544 55 355578899
Q ss_pred HHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCccccHHHHHHHHHHCCC-cEEEecC
Q psy17793 203 IQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPE-VELVQTL 264 (397)
Q Consensus 203 ~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~-~~l~~~~ 264 (397)
+|.+||.+ ++++||+||+|||||||++|.|||+||+.+|+...+ ++++...
T Consensus 274 LQ~~iL~r-----------gl~lLk~GG~lVYSTCSLnpieNEaVV~~~L~~~~~~~~lv~~~ 325 (375)
T KOG2198|consen 274 LQLRILRR-----------GLRLLKVGGRLVYSTCSLNPIENEAVVQEALQKVGGAVELVDVS 325 (375)
T ss_pred HHHHHHHH-----------HHHHhcCCCEEEEeccCCCchhhHHHHHHHHHHhcCcccceeec
Confidence 99999999 999999999999999999999999999999998864 6666543
No 13
>KOG2360|consensus
Probab=99.98 E-value=2e-32 Score=266.98 Aligned_cols=216 Identities=32% Similarity=0.514 Sum_probs=180.3
Q ss_pred cCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEE
Q psy17793 62 LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTH 141 (397)
Q Consensus 62 ~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~ 141 (397)
++.|.+++||.+|++++++|++.+|..|+|+||+||+||+|+|..+.+.++|+|+|.++.|.+.+++.+...|+++++..
T Consensus 190 y~~g~~ilqd~asclpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~ 269 (413)
T KOG2360|consen 190 YKNGKFILQDKASCLPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESV 269 (413)
T ss_pred cccCceEEechhhcchhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred EcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccc-----cccCccchHHHHHHHHHHHHHHHHHHhhhhc
Q psy17793 142 VYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFY-----NANSFLNLDKKIKSYANIQKKLLQAVYRFVS 216 (397)
Q Consensus 142 ~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~-----~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~ 216 (397)
.+|++..... ..| ..+..||+||+|||+|+..+.. ...+ .++++.+...|..++.+||+||+
T Consensus 270 ~~df~~t~~~-------~~~--~~v~~iL~DpscSgSgm~~r~~~~~~~e~~~----~~rL~~L~~fq~~~~~hal~fp~ 336 (413)
T KOG2360|consen 270 EGDFLNTATP-------EKF--RDVTYILVDPSCSGSGMVSRQDEDPGAETES----PERLENLQSFQIRILKHALTFPN 336 (413)
T ss_pred cccccCCCCc-------ccc--cceeEEEeCCCCCCCccccceeeccCCCccc----HHHHHHHHHHHHHHHHHHhcCCc
Confidence 9999875211 122 4688999999999999632221 2223 58999999999999999999996
Q ss_pred cccccccccccCCcEEEEEecCCCccccHHHHHHHHHHCCC-cEEEe--cCcccCCCCCccCCCchhhhcceEEeCCCCC
Q psy17793 217 LFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPE-VELVQ--TLPQLGMKGLAHKDLEAEDQAVMQRFGPPLI 293 (397)
Q Consensus 217 ~~~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~-~~l~~--~~~~~~~~g~~~~~~~~~~~~~~~r~~P~~~ 293 (397)
+ .+++|||||++.||||+||+..|...|+ +.+.+ +.+.|...|.+.... .+.+.|..|.
T Consensus 337 ~------------k~vvystcs~~reene~vv~d~l~~~p~~~~l~~kK~~p~w~~rg~~~~~~----~e~~lr~~p~-- 398 (413)
T KOG2360|consen 337 L------------KRLVYSTCSLHREENEQVVQEVLQQNPDAKRLAPKKVLPAWPHRGLSTFSG----AEHCLRASPK-- 398 (413)
T ss_pred h------------hheeeecchhhhhhhhHHHHHHHhhChhHhhhchhhcchhhhhcCCccccc----cccceecccC--
Confidence 3 3899999999999999999999999886 44445 566676666443322 3457777774
Q ss_pred CCCCCCCCCcEEEEeeecc
Q psy17793 294 PTDRNTDTIGFFICKLRKK 312 (397)
Q Consensus 294 t~~~~~~t~GFFiA~l~K~ 312 (397)
.+.++|||||.|.+.
T Consensus 399 ----~~~~~gffva~fer~ 413 (413)
T KOG2360|consen 399 ----STLTIGFFVALFERV 413 (413)
T ss_pred ----CCCcceEEEEEeecC
Confidence 578999999988763
No 14
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.77 E-value=7.6e-18 Score=170.74 Aligned_cols=183 Identities=17% Similarity=0.225 Sum_probs=133.6
Q ss_pred ccceEEEEccccccCCCcc-cCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHH
Q psy17793 43 FRGVAVEITNVLSQVPNVA-LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKP 121 (397)
Q Consensus 43 ~~gi~v~~~~~~~~~p~~~-~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~ 121 (397)
+..+.+++.+..|.++-.. +++|+|+.|.....++..+. +|.+|||+|||+|+++++++. .+..+|+++|+|+.
T Consensus 180 ~~~~~v~E~g~~f~vdl~~g~ktG~flDqr~~R~~~~~~~---~g~rVLDlfsgtG~~~l~aa~--~ga~~V~~VD~s~~ 254 (396)
T PRK15128 180 PALLPIEEHGMKLLVDIQGGHKTGYYLDQRDSRLATRRYV---ENKRVLNCFSYTGGFAVSALM--GGCSQVVSVDTSQE 254 (396)
T ss_pred CccEEEEECCEEEEEecccccccCcChhhHHHHHHHHHhc---CCCeEEEeccCCCHHHHHHHh--CCCCEEEEEECCHH
Confidence 3557788888888776555 89999999988777766543 578999999999999876554 45669999999999
Q ss_pred HHHHHHHHHHHhCCC--cEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHH
Q psy17793 122 RVTKLEETIKKLQLS--SIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKS 199 (397)
Q Consensus 122 rl~~l~~n~~~~g~~--~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~ 199 (397)
+++.+++|++.+|++ +++++++|+..+... .....++||+|++|||+..... + .+......
T Consensus 255 al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~-------~~~~~~~fDlVilDPP~f~~~k--------~--~l~~~~~~ 317 (396)
T PRK15128 255 ALDIARQNVELNKLDLSKAEFVRDDVFKLLRT-------YRDRGEKFDVIVMDPPKFVENK--------S--QLMGACRG 317 (396)
T ss_pred HHHHHHHHHHHcCCCCCcEEEEEccHHHHHHH-------HHhcCCCCCEEEECCCCCCCCh--------H--HHHHHHHH
Confidence 999999999999985 699999999876311 0012357999999999754221 0 01122222
Q ss_pred HHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC--CCccccHHHHHHHHHHC-CCcEEEe
Q psy17793 200 YANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS--LSVEENEAVIAWILHRH-PEVELVQ 262 (397)
Q Consensus 200 l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS--~~~eEnE~vV~~~L~~~-~~~~l~~ 262 (397)
+ .+++.. +.++|++||.|+++||| +..++-.+.+....... ..++++.
T Consensus 318 y----~~l~~~-----------a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l~ 368 (396)
T PRK15128 318 Y----KDINML-----------AIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIE 368 (396)
T ss_pred H----HHHHHH-----------HHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 2 566677 99999999999999999 44455556666555544 2455554
No 15
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.77 E-value=5.7e-18 Score=170.14 Aligned_cols=201 Identities=21% Similarity=0.171 Sum_probs=147.9
Q ss_pred ccccccccccccccccccccccceEEEEccccccCCCcc-cCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHH
Q psy17793 23 RLPARQRPSLSIYCYALDILFRGVAVEITNVLSQVPNVA-LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLT 101 (397)
Q Consensus 23 ~~~~~~~~~~~i~~~~~~~~~~gi~v~~~~~~~~~p~~~-~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~ 101 (397)
+..+++........+..+ ++.+.|++.+..+.+.... +++|.|..|..+...+...+. |++|||++|.||++|+
T Consensus 159 r~~~~~~~~~~~~~g~~~--~~~~~i~E~g~kf~v~~~~g~kTGfFlDqR~~R~~l~~~~~---GkrvLNlFsYTGgfSv 233 (393)
T COG1092 159 RRREGLKGRSQYLKGEEA--PEEVVIEENGVKFLVDLVDGLKTGFFLDQRDNRRALGELAA---GKRVLNLFSYTGGFSV 233 (393)
T ss_pred hhhhcccccccccccccC--CCcEEEEeCCeEEEEecCCcccceeeHHhHHHHHHHhhhcc---CCeEEEecccCcHHHH
Confidence 344555566665555333 6889999999888886665 899999999999988887765 9999999999999998
Q ss_pred HHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc--EEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCC
Q psy17793 102 HIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS--IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG 179 (397)
Q Consensus 102 ~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~--v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G 179 (397)
++|. ++..+|++||+|...++.+++|++.+|+.. ++++++|+.++... ..-...+||+|++|||-.+-+
T Consensus 234 ~Aa~--gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~-------~~~~g~~fDlIilDPPsF~r~ 304 (393)
T COG1092 234 HAAL--GGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRK-------AERRGEKFDLIILDPPSFARS 304 (393)
T ss_pred HHHh--cCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHH-------HHhcCCcccEEEECCcccccC
Confidence 8877 566699999999999999999999999853 89999999988632 112345899999999933322
Q ss_pred CCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCcccc--HHHHHHHHHH-CC
Q psy17793 180 QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN--EAVIAWILHR-HP 256 (397)
Q Consensus 180 ~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~eEn--E~vV~~~L~~-~~ 256 (397)
. +...+...--.+|+.. +.++|+|||+++.||||-+-..+ .+.|...+.. ..
T Consensus 305 k--------------~~~~~~~rdy~~l~~~-----------~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~~~ 359 (393)
T COG1092 305 K--------------KQEFSAQRDYKDLNDL-----------ALRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAAAAGR 359 (393)
T ss_pred c--------------ccchhHHHHHHHHHHH-----------HHHHcCCCCEEEEEecCCccCHHHHHHHHHHHHHhcCC
Confidence 1 1112222222667777 99999999999999999665444 3344443333 33
Q ss_pred CcEEEe
Q psy17793 257 EVELVQ 262 (397)
Q Consensus 257 ~~~l~~ 262 (397)
..+.+.
T Consensus 360 ~~~~~~ 365 (393)
T COG1092 360 RAQEIE 365 (393)
T ss_pred cEEEee
Confidence 444443
No 16
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.71 E-value=3.2e-17 Score=158.86 Aligned_cols=178 Identities=22% Similarity=0.277 Sum_probs=124.5
Q ss_pred ccceEEEEccccccCCCcc-cCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHH
Q psy17793 43 FRGVAVEITNVLSQVPNVA-LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKP 121 (397)
Q Consensus 43 ~~gi~v~~~~~~~~~p~~~-~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~ 121 (397)
++.+.|++.+..|.++... +++|+|..|.....++.... .|.+|||++|.+|+++++++. ++..+|++||.|..
T Consensus 83 ~~~~~v~E~gl~f~v~l~~gqktGlFlDqR~nR~~v~~~~---~gkrvLnlFsYTGgfsv~Aa~--gGA~~v~~VD~S~~ 157 (286)
T PF10672_consen 83 PEFFTVEENGLKFRVDLTDGQKTGLFLDQRENRKWVRKYA---KGKRVLNLFSYTGGFSVAAAA--GGAKEVVSVDSSKR 157 (286)
T ss_dssp SSEEEEEETTEEEEEESSSSSSTSS-GGGHHHHHHHHHHC---TTCEEEEET-TTTHHHHHHHH--TTESEEEEEES-HH
T ss_pred CCceEEEECCEEEEEEcCCCCcceEcHHHHhhHHHHHHHc---CCCceEEecCCCCHHHHHHHH--CCCCEEEEEeCCHH
Confidence 4667889999888887765 89999999999998887764 488999999999999987665 56668999999999
Q ss_pred HHHHHHHHHHHhCCC--cEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHH
Q psy17793 122 RVTKLEETIKKLQLS--SIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKS 199 (397)
Q Consensus 122 rl~~l~~n~~~~g~~--~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~ 199 (397)
.++.+++|++.+|++ .++++..|+.+.... . ...++||+|++|||-..-| ++. + .+.
T Consensus 158 al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~-------~-~~~~~fD~IIlDPPsF~k~-------~~~---~---~~~ 216 (286)
T PF10672_consen 158 ALEWAKENAALNGLDLDRHRFIQGDVFKFLKR-------L-KKGGRFDLIILDPPSFAKS-------KFD---L---ERD 216 (286)
T ss_dssp HHHHHHHHHHHTT-CCTCEEEEES-HHHHHHH-------H-HHTT-EEEEEE--SSEESS-------TCE---H---HHH
T ss_pred HHHHHHHHHHHcCCCccceEEEecCHHHHHHH-------H-hcCCCCCEEEECCCCCCCC-------HHH---H---HHH
Confidence 999999999999975 599999999876421 1 1246899999999943211 111 1 122
Q ss_pred HHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCccccHHHHHHHHHHCCCcEEEe
Q psy17793 200 YANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQ 262 (397)
Q Consensus 200 l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~ 262 (397)
+ .+|+.. +.++|+|||.|+.+|||-+-..+. .++.+.+..++++++.
T Consensus 217 y----~~L~~~-----------a~~ll~~gG~l~~~scs~~i~~~~-l~~~~~~~a~~~~~~~ 263 (286)
T PF10672_consen 217 Y----KKLLRR-----------AMKLLKPGGLLLTCSCSHHISPDF-LLEAVAEAAREVEFIE 263 (286)
T ss_dssp H----HHHHHH-----------HHHTEEEEEEEEEEE--TTS-HHH-HHHHHHHHHHHCEEEE
T ss_pred H----HHHHHH-----------HHHhcCCCCEEEEEcCCcccCHHH-HHHHHHHhCccceEee
Confidence 3 567777 999999999999999996655432 3333333334555543
No 17
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.62 E-value=3.9e-15 Score=161.41 Aligned_cols=164 Identities=19% Similarity=0.166 Sum_probs=125.5
Q ss_pred ccceEEEEccccccCCCcc-cCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHH
Q psy17793 43 FRGVAVEITNVLSQVPNVA-LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKP 121 (397)
Q Consensus 43 ~~gi~v~~~~~~~~~p~~~-~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~ 121 (397)
++-+.+++.+..+.+.... +++|.|+.|.....++..+. +|.+|||+|||+|++++++|.. +..+|+++|+|+.
T Consensus 498 ~~~~~v~e~g~~f~v~~~~~~~tG~flDqr~~R~~~~~~~---~g~rVLDlf~gtG~~sl~aa~~--Ga~~V~~vD~s~~ 572 (702)
T PRK11783 498 GEFLEVTEYGAKLLVNLTDYLDTGLFLDHRPTRRMIGQMA---KGKDFLNLFAYTGTASVHAALG--GAKSTTTVDMSNT 572 (702)
T ss_pred CceEEEEECCEEEEEEcCCCCcceECHHHHHHHHHHHHhc---CCCeEEEcCCCCCHHHHHHHHC--CCCEEEEEeCCHH
Confidence 3456677777777766554 78999999988887776654 4789999999999999998873 4557999999999
Q ss_pred HHHHHHHHHHHhCCC--cEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHH
Q psy17793 122 RVTKLEETIKKLQLS--SIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKS 199 (397)
Q Consensus 122 rl~~l~~n~~~~g~~--~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~ 199 (397)
+++.+++|++.+|++ +++++++|+.++... ..++||+|++|||+.+.+.... .. .....
T Consensus 573 al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~----------~~~~fDlIilDPP~f~~~~~~~----~~----~~~~~- 633 (702)
T PRK11783 573 YLEWAERNFALNGLSGRQHRLIQADCLAWLKE----------AREQFDLIFIDPPTFSNSKRME----DS----FDVQR- 633 (702)
T ss_pred HHHHHHHHHHHhCCCccceEEEEccHHHHHHH----------cCCCcCEEEECCCCCCCCCccc----hh----hhHHH-
Confidence 999999999999986 699999999775311 1468999999999876542100 00 12222
Q ss_pred HHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCcccc
Q psy17793 200 YANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244 (397)
Q Consensus 200 l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~eEn 244 (397)
...+++.. +.++|+|||.+++++|+-+-...
T Consensus 634 ---~y~~l~~~-----------a~~lL~~gG~l~~~~~~~~~~~~ 664 (702)
T PRK11783 634 ---DHVALIKD-----------AKRLLRPGGTLYFSNNKRGFKMD 664 (702)
T ss_pred ---HHHHHHHH-----------HHHHcCCCCEEEEEeCCccCChh
Confidence 23667887 99999999999999998665543
No 18
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.59 E-value=1.7e-14 Score=136.54 Aligned_cols=160 Identities=21% Similarity=0.228 Sum_probs=117.9
Q ss_pred CCcEEEechh-------HHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy17793 64 SSMGILQNLP-------SILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS 136 (397)
Q Consensus 64 ~g~~~~Qd~~-------S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~ 136 (397)
....++|+.. +.+++.+..+....+|||+|||.|..++.+|++..+ .+|++||+++.+.+.+++|++.+++.
T Consensus 16 ~~~~I~q~~~~~~~~~DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~ 94 (248)
T COG4123 16 KQFFIIQDRCGFRYGTDAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLE 94 (248)
T ss_pred cceEEEeCCCccccccHHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcch
Confidence 3444556543 678888888877899999999999999999997643 89999999999999999999999886
Q ss_pred -cEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCC--cccccccCccchHHHHHHHHHHHHHHHHHHhh
Q psy17793 137 -SIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQR--PMFYNANSFLNLDKKIKSYANIQKKLLQAVYR 213 (397)
Q Consensus 137 -~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~--p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~ 213 (397)
+|++++.|+..+... ....+||.|+||||+.-.|.. ++-.... .+.+....+ ..+++.
T Consensus 95 ~ri~v~~~Di~~~~~~---------~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~------Ar~e~~~~l-e~~i~~--- 155 (248)
T COG4123 95 ERIQVIEADIKEFLKA---------LVFASFDLIICNPPYFKQGSRLNENPLRAI------ARHEITLDL-EDLIRA--- 155 (248)
T ss_pred hceeEehhhHHHhhhc---------ccccccCEEEeCCCCCCCccccCcChhhhh------hhhhhcCCH-HHHHHH---
Confidence 499999999887532 233479999999999887743 2111100 111111111 567777
Q ss_pred hhccccccccccccCCcEEEEEecCCCccccHHHHHHHHHHC
Q psy17793 214 FVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRH 255 (397)
Q Consensus 214 f~~~~~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~ 255 (397)
|.++||+||++.+. ++.|.-.-+...+.++
T Consensus 156 --------a~~~lk~~G~l~~V----~r~erl~ei~~~l~~~ 185 (248)
T COG4123 156 --------AAKLLKPGGRLAFV----HRPERLAEIIELLKSY 185 (248)
T ss_pred --------HHHHccCCCEEEEE----ecHHHHHHHHHHHHhc
Confidence 99999999999885 6666554555566665
No 19
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.58 E-value=9e-15 Score=131.82 Aligned_cols=123 Identities=18% Similarity=0.208 Sum_probs=96.8
Q ss_pred chhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccc
Q psy17793 71 NLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINT 150 (397)
Q Consensus 71 d~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~ 150 (397)
|.++.++...+...++.+|||+|||+|..++.++... +..+|+++|+|+.+++.+++|++.+++.++++...|.....
T Consensus 17 d~~t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~- 94 (170)
T PF05175_consen 17 DAGTRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL- 94 (170)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC-
T ss_pred CHHHHHHHHHHhhccCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccc-
Confidence 6778787777776678899999999999999999864 45689999999999999999999999988999999987652
Q ss_pred cchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCc
Q psy17793 151 SSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDG 230 (397)
Q Consensus 151 ~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG 230 (397)
..++||.|++|||....+ ... ....+++++. +.++|||||
T Consensus 95 -----------~~~~fD~Iv~NPP~~~~~--------------~~~----~~~~~~~i~~-----------a~~~Lk~~G 134 (170)
T PF05175_consen 95 -----------PDGKFDLIVSNPPFHAGG--------------DDG----LDLLRDFIEQ-----------ARRYLKPGG 134 (170)
T ss_dssp -----------CTTCEEEEEE---SBTTS--------------HCH----HHHHHHHHHH-----------HHHHEEEEE
T ss_pred -----------cccceeEEEEccchhccc--------------ccc----hhhHHHHHHH-----------HHHhccCCC
Confidence 357899999999932210 111 1233778888 999999999
Q ss_pred EEEEE
Q psy17793 231 ILVYC 235 (397)
Q Consensus 231 ~lvys 235 (397)
.+++.
T Consensus 135 ~l~lv 139 (170)
T PF05175_consen 135 RLFLV 139 (170)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98665
No 20
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.57 E-value=8.3e-15 Score=122.72 Aligned_cols=116 Identities=22% Similarity=0.292 Sum_probs=89.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEEcccccccccchhhHHHhhhccc
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL-SSIQTHVYDSTRINTSSQIDIERMKLQKE 164 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~-~~v~~~~~D~~~~~~~~~~d~~~~~~~~~ 164 (397)
|.+|||+|||+|..+.+++... ..+++++|+++..++.+++++..+++ .+++++++|+.+... .+..+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~---------~~~~~ 69 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPE---------PLPDG 69 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHH---------TCTTT
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchh---------hccCc
Confidence 5789999999999999988874 68999999999999999999999998 469999999977631 24567
Q ss_pred CccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793 165 SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS 238 (397)
Q Consensus 165 ~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS 238 (397)
+||+|++|||+....... .. ..+....++++ +.++|||||.+++.+|.
T Consensus 70 ~~D~Iv~npP~~~~~~~~------------~~---~~~~~~~~~~~-----------~~~~L~~gG~~~~~~~~ 117 (117)
T PF13659_consen 70 KFDLIVTNPPYGPRSGDK------------AA---LRRLYSRFLEA-----------AARLLKPGGVLVFITPA 117 (117)
T ss_dssp -EEEEEE--STTSBTT-------------------GGCHHHHHHHH-----------HHHHEEEEEEEEEEEEG
T ss_pred eeEEEEECCCCccccccc------------hh---hHHHHHHHHHH-----------HHHHcCCCeEEEEEeCC
Confidence 899999999986532110 00 01133567888 99999999999998863
No 21
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.56 E-value=5.9e-14 Score=126.79 Aligned_cols=142 Identities=23% Similarity=0.275 Sum_probs=114.8
Q ss_pred echhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEccccccc
Q psy17793 70 QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRIN 149 (397)
Q Consensus 70 Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~ 149 (397)
..+-..+....|.+++|++++|+|||+|+.|..+| ++++.++|+|+|.++++++..++|++++|++|++++.+|+-..+
T Consensus 19 K~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L 97 (187)
T COG2242 19 KEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEAL 97 (187)
T ss_pred HHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhh
Confidence 34455677778999999999999999999999999 66789999999999999999999999999999999999997764
Q ss_pred ccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCC
Q psy17793 150 TSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKD 229 (397)
Q Consensus 150 ~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpg 229 (397)
.. . .+||+|++ .|+| ++ ..+|+. ++..||+|
T Consensus 98 ~~----------~-~~~daiFI----GGg~------------~i-----------~~ile~-----------~~~~l~~g 128 (187)
T COG2242 98 PD----------L-PSPDAIFI----GGGG------------NI-----------EEILEA-----------AWERLKPG 128 (187)
T ss_pred cC----------C-CCCCEEEE----CCCC------------CH-----------HHHHHH-----------HHHHcCcC
Confidence 22 1 26999998 1111 12 567788 99999999
Q ss_pred cEEEEEecCCCccccHHHHHHHHHHCCCcEEEecC
Q psy17793 230 GILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL 264 (397)
Q Consensus 230 G~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~~~ 264 (397)
|+||.. ....|++......+++.+..+++.+.
T Consensus 129 grlV~n---aitlE~~~~a~~~~~~~g~~ei~~v~ 160 (187)
T COG2242 129 GRLVAN---AITLETLAKALEALEQLGGREIVQVQ 160 (187)
T ss_pred CeEEEE---eecHHHHHHHHHHHHHcCCceEEEEE
Confidence 999986 34478888888888888532665543
No 22
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.56 E-value=3.3e-14 Score=134.31 Aligned_cols=123 Identities=25% Similarity=0.375 Sum_probs=101.6
Q ss_pred HHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchh
Q psy17793 75 ILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQI 154 (397)
Q Consensus 75 ~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~ 154 (397)
......+.+.+|++|||+|||||..+..+++..+ .++|+++|+|+.|++.+++.+...|..+|+++.+|+.+++
T Consensus 41 ~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP----- 114 (238)
T COG2226 41 RALISLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP----- 114 (238)
T ss_pred HHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC-----
Confidence 3455556666999999999999999999999976 8999999999999999999999999888999999999874
Q ss_pred hHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEE
Q psy17793 155 DIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVY 234 (397)
Q Consensus 155 d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvy 234 (397)
|++.+||+|.+ .-.++...+. .+.|++ +.|.|||||+++.
T Consensus 115 ------f~D~sFD~vt~----------------------~fglrnv~d~-~~aL~E-----------~~RVlKpgG~~~v 154 (238)
T COG2226 115 ------FPDNSFDAVTI----------------------SFGLRNVTDI-DKALKE-----------MYRVLKPGGRLLV 154 (238)
T ss_pred ------CCCCccCEEEe----------------------eehhhcCCCH-HHHHHH-----------HHHhhcCCeEEEE
Confidence 78899999997 1233333334 667888 9999999998876
Q ss_pred EecCCCccccH
Q psy17793 235 CTCSLSVEENE 245 (397)
Q Consensus 235 sTCS~~~eEnE 245 (397)
. .++..++.
T Consensus 155 l--e~~~p~~~ 163 (238)
T COG2226 155 L--EFSKPDNP 163 (238)
T ss_pred E--EcCCCCch
Confidence 5 56665664
No 23
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.54 E-value=1.3e-13 Score=124.87 Aligned_cols=159 Identities=17% Similarity=0.108 Sum_probs=111.3
Q ss_pred echhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEccccccc
Q psy17793 70 QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRIN 149 (397)
Q Consensus 70 Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~ 149 (397)
-...+.++...+...++++|||+|||+|..+..++... .+|+++|+|+.+++.+++|++.++. ++++..+|....
T Consensus 4 ~~~d~~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~- 78 (179)
T TIGR00537 4 PAEDSLLLEANLRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKG- 78 (179)
T ss_pred CCccHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEcccccc-
Confidence 34455666677777778899999999999999888852 3899999999999999999998886 588888887654
Q ss_pred ccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccch-HHHHHHHHHHHHHHHHHHhhhhccccccccccccC
Q psy17793 150 TSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNL-DKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKK 228 (397)
Q Consensus 150 ~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~-~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkp 228 (397)
..++||.|++|||+......... ..+. +. ......-.....++|++ +.++|||
T Consensus 79 ------------~~~~fD~Vi~n~p~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~l~~-----------~~~~Lk~ 132 (179)
T TIGR00537 79 ------------VRGKFDVILFNPPYLPLEDDLRR-GDWL--DVAIDGGKDGRKVIDRFLDE-----------LPEILKE 132 (179)
T ss_pred ------------cCCcccEEEECCCCCCCcchhcc-cchh--hhhhhcCCchHHHHHHHHHh-----------HHHhhCC
Confidence 12479999999998543311000 0000 00 00000112234778888 9999999
Q ss_pred CcEEEEEecCCCccccHHHHHHHHHHCCCcEEEec
Q psy17793 229 DGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263 (397)
Q Consensus 229 gG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~~ 263 (397)
||++++.+++.. ++..+...|++. +++...+
T Consensus 133 gG~~~~~~~~~~---~~~~~~~~l~~~-gf~~~~~ 163 (179)
T TIGR00537 133 GGRVQLIQSSLN---GEPDTFDKLDER-GFRYEIV 163 (179)
T ss_pred CCEEEEEEeccC---ChHHHHHHHHhC-CCeEEEE
Confidence 999999876643 455667777776 4665543
No 24
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.54 E-value=7.4e-14 Score=133.68 Aligned_cols=138 Identities=15% Similarity=0.133 Sum_probs=99.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccC
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKES 165 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~ 165 (397)
+.+|||+|||+|..++.++... +..+|+|+|+|+.+++.+++|++.++. +++++|+...... ...++
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A~~N~~~~~~---~~~~~D~~~~l~~---------~~~~~ 153 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCARRNLADAGG---TVHEGDLYDALPT---------ALRGR 153 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC---EEEEeechhhcch---------hcCCC
Confidence 4589999999999999998875 346899999999999999999998873 6788887654211 11357
Q ss_pred ccEEEEcCCCCCCCC----CcccccccCccchHHHH---HHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793 166 FDRILLDAPCSGFGQ----RPMFYNANSFLNLDKKI---KSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS 238 (397)
Q Consensus 166 fD~Il~DpPCSg~G~----~p~~~~~~s~~~~~~~~---~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS 238 (397)
||+|++||||..++. .|+...... ...+ .+-...+++++.. +.++|||||++++.+..
T Consensus 154 fDlVv~NPPy~~~~~~~~~~~e~~~~ep----~~al~gg~dgl~~~~~i~~~-----------a~~~L~~gG~l~l~~~~ 218 (251)
T TIGR03704 154 VDILAANAPYVPTDAIALMPPEARDHEP----RVALDGGADGLDVLRRVAAG-----------APDWLAPGGHLLVETSE 218 (251)
T ss_pred EeEEEECCCCCCchhhhcCCHHHHhCCC----HHHhcCCCcHHHHHHHHHHH-----------HHHhcCCCCEEEEEECc
Confidence 999999999987652 344333322 1111 1223456889999 99999999999998542
Q ss_pred CCccccHHHHHHHHHHC
Q psy17793 239 LSVEENEAVIAWILHRH 255 (397)
Q Consensus 239 ~~~eEnE~vV~~~L~~~ 255 (397)
++.+-+...++++
T Consensus 219 ----~~~~~v~~~l~~~ 231 (251)
T TIGR03704 219 ----RQAPLAVEAFARA 231 (251)
T ss_pred ----chHHHHHHHHHHC
Confidence 3334455666665
No 25
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.53 E-value=2.1e-14 Score=135.89 Aligned_cols=132 Identities=21% Similarity=0.350 Sum_probs=90.3
Q ss_pred HHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhh
Q psy17793 76 LAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQID 155 (397)
Q Consensus 76 l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d 155 (397)
.+...+.+++|++|||+|||+|..+..++..+++.++|+++|+|+.+++.++++++..+..+|+++++|+.+++
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp------ 111 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLP------ 111 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--------
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhc------
Confidence 44556678899999999999999999999888778899999999999999999999999889999999998873
Q ss_pred HHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793 156 IERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC 235 (397)
Q Consensus 156 ~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys 235 (397)
+++++||.|++ +.| +..+.+. .+.|++ +.++|||||+++..
T Consensus 112 -----~~d~sfD~v~~-----~fg-----------------lrn~~d~-~~~l~E-----------~~RVLkPGG~l~il 152 (233)
T PF01209_consen 112 -----FPDNSFDAVTC-----SFG-----------------LRNFPDR-ERALRE-----------MYRVLKPGGRLVIL 152 (233)
T ss_dssp -----S-TT-EEEEEE-----ES------------------GGG-SSH-HHHHHH-----------HHHHEEEEEEEEEE
T ss_pred -----CCCCceeEEEH-----Hhh-----------------HHhhCCH-HHHHHH-----------HHHHcCCCeEEEEe
Confidence 56789999997 111 1122222 556788 99999999999876
Q ss_pred ecCCCccccHHHHHHHHHHC
Q psy17793 236 TCSLSVEENEAVIAWILHRH 255 (397)
Q Consensus 236 TCS~~~eEnE~vV~~~L~~~ 255 (397)
.++..+|. .+..+.+-+
T Consensus 153 --e~~~p~~~-~~~~~~~~y 169 (233)
T PF01209_consen 153 --EFSKPRNP-LLRALYKFY 169 (233)
T ss_dssp --EEEB-SSH-HHHHHHHH-
T ss_pred --eccCCCCc-hhhceeeee
Confidence 44555565 666666555
No 26
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.52 E-value=7e-13 Score=122.27 Aligned_cols=137 Identities=23% Similarity=0.310 Sum_probs=104.7
Q ss_pred echhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEEcccccc
Q psy17793 70 QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL-SSIQTHVYDSTRI 148 (397)
Q Consensus 70 Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~-~~v~~~~~D~~~~ 148 (397)
+.+...+....+++.++++|||+|||+|..+..+|..++..++|+++|+++.+++.+++|++++|+ .++.++.+|+.+.
T Consensus 25 ~~~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~ 104 (198)
T PRK00377 25 KEEIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEI 104 (198)
T ss_pred HHHHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhh
Confidence 334455555667889999999999999999999998876678999999999999999999999994 6799999888654
Q ss_pred cccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccC
Q psy17793 149 NTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKK 228 (397)
Q Consensus 149 ~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkp 228 (397)
.. ...+.||+|+++.. ...+ ..+++. +.++|||
T Consensus 105 l~----------~~~~~~D~V~~~~~-------------------~~~~-------~~~l~~-----------~~~~Lkp 137 (198)
T PRK00377 105 LF----------TINEKFDRIFIGGG-------------------SEKL-------KEIISA-----------SWEIIKK 137 (198)
T ss_pred Hh----------hcCCCCCEEEECCC-------------------cccH-------HHHHHH-----------HHHHcCC
Confidence 21 12357999998432 0111 445666 8899999
Q ss_pred CcEEEEEecCCCccccHHHHHHHHHHCC
Q psy17793 229 DGILVYCTCSLSVEENEAVIAWILHRHP 256 (397)
Q Consensus 229 gG~lvysTCS~~~eEnE~vV~~~L~~~~ 256 (397)
||++++.+|++ ++.+.+...|+++.
T Consensus 138 gG~lv~~~~~~---~~~~~~~~~l~~~g 162 (198)
T PRK00377 138 GGRIVIDAILL---ETVNNALSALENIG 162 (198)
T ss_pred CcEEEEEeecH---HHHHHHHHHHHHcC
Confidence 99999987753 45556666776663
No 27
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.51 E-value=1e-13 Score=137.76 Aligned_cols=123 Identities=21% Similarity=0.265 Sum_probs=97.4
Q ss_pred HHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH
Q psy17793 77 AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI 156 (397)
Q Consensus 77 ~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~ 156 (397)
.+.+..+++|+.|||.|||+|+.+..++.. +..|+|+|+|+.+++.+++|++++|+.++.+..+|+.++.
T Consensus 174 ~~~l~~~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~------- 243 (329)
T TIGR01177 174 MVNLARVTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLP------- 243 (329)
T ss_pred HHHHhCCCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCC-------
Confidence 344556789999999999999998876553 4689999999999999999999999988889999998763
Q ss_pred HHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793 157 ERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT 236 (397)
Q Consensus 157 ~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT 236 (397)
+..+.||.|++||||...... .......++.++|+. +.+.|||||++++.+
T Consensus 244 ----~~~~~~D~Iv~dPPyg~~~~~--------------~~~~~~~l~~~~l~~-----------~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 244 ----LSSESVDAIATDPPYGRSTTA--------------AGDGLESLYERSLEE-----------FHEVLKSEGWIVYAV 294 (329)
T ss_pred ----cccCCCCEEEECCCCcCcccc--------------cCCchHHHHHHHHHH-----------HHHHccCCcEEEEEE
Confidence 234689999999998542110 001123445778888 999999999999987
Q ss_pred cC
Q psy17793 237 CS 238 (397)
Q Consensus 237 CS 238 (397)
++
T Consensus 295 ~~ 296 (329)
T TIGR01177 295 PT 296 (329)
T ss_pred cC
Confidence 76
No 28
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.51 E-value=1.3e-13 Score=114.49 Aligned_cols=111 Identities=23% Similarity=0.275 Sum_probs=84.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEEcccccccccchhhHHHhhhcc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL-SSIQTHVYDSTRINTSSQIDIERMKLQK 163 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~-~~v~~~~~D~~~~~~~~~~d~~~~~~~~ 163 (397)
||.+|||+|||+|..+..+++.. +..+|+|+|+|+.+++.+++++.+.+. .+|++++.|+ .... ...
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~----------~~~ 68 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDP----------DFL 68 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGT----------TTS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCc----------ccC
Confidence 57899999999999999999953 567899999999999999999976665 5799999999 2211 133
Q ss_pred cCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEec
Q psy17793 164 ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC 237 (397)
Q Consensus 164 ~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTC 237 (397)
+.||+|+++- .+. ...- .. +.++++|++ +.++|+|||++++++|
T Consensus 69 ~~~D~v~~~~-~~~--------~~~~-----~~-----~~~~~~l~~-----------~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 69 EPFDLVICSG-FTL--------HFLL-----PL-----DERRRVLER-----------IRRLLKPGGRLVINTC 112 (112)
T ss_dssp SCEEEEEECS-GSG--------GGCC-----HH-----HHHHHHHHH-----------HHHHEEEEEEEEEEE-
T ss_pred CCCCEEEECC-Ccc--------cccc-----ch-----hHHHHHHHH-----------HHHhcCCCcEEEEEEC
Confidence 5799999843 100 0000 11 334677888 9999999999999988
No 29
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.49 E-value=6.9e-13 Score=129.24 Aligned_cols=138 Identities=16% Similarity=0.240 Sum_probs=99.6
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccchhhHHHhhh
Q psy17793 83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQIDIERMKL 161 (397)
Q Consensus 83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~~d~~~~~~ 161 (397)
..++.+|||+|||+|..+..++... +..+|+|+|+|+.+++.+++|++++|+. +|+++.+|+... +
T Consensus 119 ~~~~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~------------~ 185 (284)
T TIGR03533 119 PEPVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA------------L 185 (284)
T ss_pred cCCCCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc------------c
Confidence 3456799999999999999999875 4579999999999999999999999985 599999998643 2
Q ss_pred cccCccEEEEcCCCCCCCCC----cccccccCccchHHHH----HHHHHHHHHHHHHHhhhhccccccccccccCCcEEE
Q psy17793 162 QKESFDRILLDAPCSGFGQR----PMFYNANSFLNLDKKI----KSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILV 233 (397)
Q Consensus 162 ~~~~fD~Il~DpPCSg~G~~----p~~~~~~s~~~~~~~~----~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lv 233 (397)
...+||.|++||||...+.. ++. .... ...+ ..+ ...+.++.. +.++|+|||+++
T Consensus 186 ~~~~fD~Iv~NPPy~~~~~~~~l~~~~-~~ep----~~al~gg~dGl-~~~~~il~~-----------a~~~L~~gG~l~ 248 (284)
T TIGR03533 186 PGRKYDLIVSNPPYVDAEDMADLPAEY-HHEP----ELALASGEDGL-DLVRRILAE-----------AADHLNENGVLV 248 (284)
T ss_pred CCCCccEEEECCCCCCccchhhCCHhh-hcCH----HHHhcCCCcHH-HHHHHHHHH-----------HHHhcCCCCEEE
Confidence 33579999999999876521 111 1111 0111 112 334778888 999999999998
Q ss_pred EEecCCCccccHHHHHHHHHHC
Q psy17793 234 YCTCSLSVEENEAVIAWILHRH 255 (397)
Q Consensus 234 ysTCS~~~eEnE~vV~~~L~~~ 255 (397)
+.+. . +.+.+...+..+
T Consensus 249 ~e~g---~--~~~~v~~~~~~~ 265 (284)
T TIGR03533 249 VEVG---N--SMEALEEAYPDV 265 (284)
T ss_pred EEEC---c--CHHHHHHHHHhC
Confidence 7643 2 223555566554
No 30
>PRK14967 putative methyltransferase; Provisional
Probab=99.49 E-value=1e-12 Score=123.46 Aligned_cols=154 Identities=20% Similarity=0.222 Sum_probs=103.9
Q ss_pred CCcEEEechhHHHHHhcc---CCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEE
Q psy17793 64 SSMGILQNLPSILAGHYL---DVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQT 140 (397)
Q Consensus 64 ~g~~~~Qd~~S~l~~~~L---~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~ 140 (397)
.|.|..+..+ .++...+ ...++++|||+|||+|..+..++.. +.++|+++|+|+.+++.+++|++.+++ ++.+
T Consensus 13 ~g~~~p~~ds-~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~--~~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~ 88 (223)
T PRK14967 13 PGVYRPQEDT-QLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAA--GAGSVTAVDISRRAVRSARLNALLAGV-DVDV 88 (223)
T ss_pred CCCcCCCCcH-HHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHhCC-eeEE
Confidence 4555555544 4443433 4678899999999999999988874 345999999999999999999999987 5788
Q ss_pred EEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCC------CcccccccCccchHHHHHHHHHHHHHHHHHHhhh
Q psy17793 141 HVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQ------RPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRF 214 (397)
Q Consensus 141 ~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~------~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f 214 (397)
+..|+... +..++||+|++|||+..... .+...+... ... ...+..++++
T Consensus 89 ~~~d~~~~------------~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~----~~~----~~~~~~~l~~---- 144 (223)
T PRK14967 89 RRGDWARA------------VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAG----PDG----RAVLDRLCDA---- 144 (223)
T ss_pred EECchhhh------------ccCCCeeEEEECCCCCCCCcccccccChhHhhhCC----CcH----HHHHHHHHHH----
Confidence 88887653 23468999999999654321 111111111 011 1233678888
Q ss_pred hccccccccccccCCcEEEEEecCCCccccHHHHHHHHHHC
Q psy17793 215 VSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRH 255 (397)
Q Consensus 215 ~~~~~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~ 255 (397)
+.++||+||++++.+-+.. +...+...++..
T Consensus 145 -------a~~~Lk~gG~l~~~~~~~~---~~~~~~~~l~~~ 175 (223)
T PRK14967 145 -------APALLAPGGSLLLVQSELS---GVERTLTRLSEA 175 (223)
T ss_pred -------HHHhcCCCcEEEEEEeccc---CHHHHHHHHHHC
Confidence 9999999999988644432 222344555554
No 31
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.46 E-value=7.1e-13 Score=123.76 Aligned_cols=91 Identities=23% Similarity=0.385 Sum_probs=78.1
Q ss_pred HHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccch
Q psy17793 74 SILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQ 153 (397)
Q Consensus 74 S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~ 153 (397)
...+...++++++++|||+|||+|..+..+|.+.+..++|+++|+++.+++.++++++++|+++++++.+|+.....
T Consensus 66 ~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~--- 142 (215)
T TIGR00080 66 VAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE--- 142 (215)
T ss_pred HHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc---
Confidence 34555678889999999999999999999999876668899999999999999999999999999999999875421
Q ss_pred hhHHHhhhcccCccEEEEcCCC
Q psy17793 154 IDIERMKLQKESFDRILLDAPC 175 (397)
Q Consensus 154 ~d~~~~~~~~~~fD~Il~DpPC 175 (397)
....||+|++|+++
T Consensus 143 --------~~~~fD~Ii~~~~~ 156 (215)
T TIGR00080 143 --------PLAPYDRIYVTAAG 156 (215)
T ss_pred --------ccCCCCEEEEcCCc
Confidence 23579999998763
No 32
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.44 E-value=2e-12 Score=122.53 Aligned_cols=148 Identities=17% Similarity=0.148 Sum_probs=102.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhccc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE 164 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~ 164 (397)
.+.+|||+|||+|..+..++... +...++++|+++.+++.++++++.+++.++++..+|+... +..+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~------------~~~~ 153 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEP------------LPGG 153 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhcc------------CcCC
Confidence 34589999999999999999875 4569999999999999999999999998899999998653 2346
Q ss_pred CccEEEEcCCCCCCCC----CcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCC
Q psy17793 165 SFDRILLDAPCSGFGQ----RPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLS 240 (397)
Q Consensus 165 ~fD~Il~DpPCSg~G~----~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~ 240 (397)
+||.|++|||++..+. .+..........+...-..+... ..++.+ +.++|+|||.+++.. +
T Consensus 154 ~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~-~~~i~~-----------~~~~L~~gG~~~~~~-~-- 218 (251)
T TIGR03534 154 KFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFY-RRIIAQ-----------APRLLKPGGWLLLEI-G-- 218 (251)
T ss_pred ceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHH-HHHHHH-----------HHHhcccCCEEEEEE-C--
Confidence 8999999999987652 11111100000000000111112 567888 999999999999862 2
Q ss_pred ccccHHHHHHHHHHCCCcEEEe
Q psy17793 241 VEENEAVIAWILHRHPEVELVQ 262 (397)
Q Consensus 241 ~eEnE~vV~~~L~~~~~~~l~~ 262 (397)
....+.+..+++++ +++.+.
T Consensus 219 -~~~~~~~~~~l~~~-gf~~v~ 238 (251)
T TIGR03534 219 -YDQGEAVRALFEAA-GFADVE 238 (251)
T ss_pred -ccHHHHHHHHHHhC-CCCceE
Confidence 23334566667766 354433
No 33
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=2.2e-12 Score=121.57 Aligned_cols=126 Identities=18% Similarity=0.272 Sum_probs=105.4
Q ss_pred cCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEE
Q psy17793 62 LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQT 140 (397)
Q Consensus 62 ~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~ 140 (397)
++-+--++-.+.+.+++..+++.||++|||+|+|+|..|..||..+++.|+|+.+|+.+..++.+++|++.+|+.+ |..
T Consensus 71 ~~R~tQiIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~ 150 (256)
T COG2519 71 MKRRTQIIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTL 150 (256)
T ss_pred CcCCCceecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEE
Confidence 3444445666677788889999999999999999999999999988889999999999999999999999999987 999
Q ss_pred EEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccc
Q psy17793 141 HVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDW 220 (397)
Q Consensus 141 ~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~ 220 (397)
...|..+.. ....||+|++|-| +. .+.|++
T Consensus 151 ~~~Dv~~~~------------~~~~vDav~LDmp-----------------~P-----------W~~le~---------- 180 (256)
T COG2519 151 KLGDVREGI------------DEEDVDAVFLDLP-----------------DP-----------WNVLEH---------- 180 (256)
T ss_pred Eeccccccc------------cccccCEEEEcCC-----------------Ch-----------HHHHHH----------
Confidence 999988763 2348999999998 12 345666
Q ss_pred cccccccCCcEE-EEEecC
Q psy17793 221 QGIPLLKKDGIL-VYCTCS 238 (397)
Q Consensus 221 ~a~~lLkpgG~l-vysTCS 238 (397)
+.+.|||||.+ +|+.|.
T Consensus 181 -~~~~Lkpgg~~~~y~P~v 198 (256)
T COG2519 181 -VSDALKPGGVVVVYSPTV 198 (256)
T ss_pred -HHHHhCCCcEEEEEcCCH
Confidence 88899999975 676665
No 34
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.43 E-value=3.5e-12 Score=116.36 Aligned_cols=134 Identities=15% Similarity=0.165 Sum_probs=102.9
Q ss_pred EechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccc
Q psy17793 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRI 148 (397)
Q Consensus 69 ~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~ 148 (397)
.++....++...+.+.++.+|||+|||+|..+..++... +.++|+++|+++.+++.+++|++++++.++++..+|+...
T Consensus 15 ~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~ 93 (187)
T PRK08287 15 TKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE 93 (187)
T ss_pred chHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh
Confidence 455555666677788889999999999999999998864 4679999999999999999999999988899988886421
Q ss_pred cccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccC
Q psy17793 149 NTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKK 228 (397)
Q Consensus 149 ~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkp 228 (397)
..++||+|+++.. ...+ ..+++. +.++|||
T Consensus 94 -------------~~~~~D~v~~~~~-------------------~~~~-------~~~l~~-----------~~~~Lk~ 123 (187)
T PRK08287 94 -------------LPGKADAIFIGGS-------------------GGNL-------TAIIDW-----------SLAHLHP 123 (187)
T ss_pred -------------cCcCCCEEEECCC-------------------ccCH-------HHHHHH-----------HHHhcCC
Confidence 1357999998532 0111 345666 8889999
Q ss_pred CcEEEEEecCCCccccHHHHHHHHHHCC
Q psy17793 229 DGILVYCTCSLSVEENEAVIAWILHRHP 256 (397)
Q Consensus 229 gG~lvysTCS~~~eEnE~vV~~~L~~~~ 256 (397)
||++++... ..++.+.+..++++++
T Consensus 124 gG~lv~~~~---~~~~~~~~~~~l~~~g 148 (187)
T PRK08287 124 GGRLVLTFI---LLENLHSALAHLEKCG 148 (187)
T ss_pred CeEEEEEEe---cHhhHHHHHHHHHHCC
Confidence 999998632 3456666777888764
No 35
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.43 E-value=1.7e-12 Score=127.85 Aligned_cols=123 Identities=20% Similarity=0.268 Sum_probs=90.8
Q ss_pred CeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccchhhHHHhhhcccC
Q psy17793 87 QKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQIDIERMKLQKES 165 (397)
Q Consensus 87 ~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~~d~~~~~~~~~~ 165 (397)
.+|||+|||+|..+..++... +..+|+|+|+|+.+++.+++|++++|+. +|+++++|+... ....+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~------------l~~~~ 201 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA------------LPGRR 201 (307)
T ss_pred CEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh------------CCCCC
Confidence 689999999999999999864 4579999999999999999999999985 599999998643 12357
Q ss_pred ccEEEEcCCCCCCCC----CcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793 166 FDRILLDAPCSGFGQ----RPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC 235 (397)
Q Consensus 166 fD~Il~DpPCSg~G~----~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys 235 (397)
||+|++||||.+.+. .++.. ......+...-..+ ...+.++.. +.++|+|||++++.
T Consensus 202 fDlIvsNPPyi~~~~~~~l~~~~~-~eP~~AL~gg~dGl-~~~~~i~~~-----------a~~~L~pgG~l~~E 262 (307)
T PRK11805 202 YDLIVSNPPYVDAEDMADLPAEYR-HEPELALAAGDDGL-DLVRRILAE-----------APDYLTEDGVLVVE 262 (307)
T ss_pred ccEEEECCCCCCccchhhcCHhhc-cCccceeeCCCchH-HHHHHHHHH-----------HHHhcCCCCEEEEE
Confidence 999999999988652 11111 11100000001112 233778888 99999999999875
No 36
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.41 E-value=6e-12 Score=115.73 Aligned_cols=147 Identities=21% Similarity=0.264 Sum_probs=108.1
Q ss_pred CcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcc
Q psy17793 65 SMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144 (397)
Q Consensus 65 g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D 144 (397)
|.-+.|+..+.++...++++++++|||+|||+|..+..++... +.++|+++|+|+.+++.+++|++++++.+++++.+|
T Consensus 20 ~~p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d 98 (196)
T PRK07402 20 GIPLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGS 98 (196)
T ss_pred CCCCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECc
Confidence 4446688888888888898999999999999999999988753 458999999999999999999999999889999999
Q ss_pred cccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccc
Q psy17793 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIP 224 (397)
Q Consensus 145 ~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~ 224 (397)
+..... .....+|.|++|.. ..+ .++++. +.+
T Consensus 99 ~~~~~~----------~~~~~~d~v~~~~~--------------------~~~-------~~~l~~-----------~~~ 130 (196)
T PRK07402 99 APECLA----------QLAPAPDRVCIEGG--------------------RPI-------KEILQA-----------VWQ 130 (196)
T ss_pred hHHHHh----------hCCCCCCEEEEECC--------------------cCH-------HHHHHH-----------HHH
Confidence 854311 11234688877532 001 455666 888
Q ss_pred cccCCcEEEEEecCCCccccHHHHHHHHHHCC--CcEEEec
Q psy17793 225 LLKKDGILVYCTCSLSVEENEAVIAWILHRHP--EVELVQT 263 (397)
Q Consensus 225 lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~--~~~l~~~ 263 (397)
+|+|||++++.+++ .+.-..+...+++.. +++.+.+
T Consensus 131 ~LkpgG~li~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 168 (196)
T PRK07402 131 YLKPGGRLVATASS---LEGLYAISEGLAQLQARNIEVVQA 168 (196)
T ss_pred hcCCCeEEEEEeec---HHHHHHHHHHHHhcCCCCceEEEE
Confidence 99999999999775 222223444455432 4555443
No 37
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.41 E-value=5.3e-12 Score=127.85 Aligned_cols=170 Identities=15% Similarity=0.116 Sum_probs=109.8
Q ss_pred CCcEEEechhHHHHHhccC-CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEE
Q psy17793 64 SSMGILQNLPSILAGHYLD-VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHV 142 (397)
Q Consensus 64 ~g~~~~Qd~~S~l~~~~L~-~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~ 142 (397)
.+.++....+..++..++. ..++.+|||+|||+|..+..++... +..+|+|+|+|+.+++.+++|+++++. +++++.
T Consensus 229 p~vLIPRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~ 306 (423)
T PRK14966 229 PNVLIPRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLGA-RVEFAH 306 (423)
T ss_pred CCccCCCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEE
Confidence 3433333334444444443 3456799999999999999888753 467999999999999999999999886 789999
Q ss_pred cccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCC---cccccccCccchHHHHHHHHHHHHHHHHHHhhhhcccc
Q psy17793 143 YDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQR---PMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFD 219 (397)
Q Consensus 143 ~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~---p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~ 219 (397)
+|...... ...++||.|++|||+...+.. +..........+...-..+.- -++++..
T Consensus 307 gDl~e~~l----------~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~-yr~Ii~~--------- 366 (423)
T PRK14966 307 GSWFDTDM----------PSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSC-IRTLAQG--------- 366 (423)
T ss_pred cchhcccc----------ccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHH-HHHHHHH---------
Confidence 99865310 013479999999999776521 111000000000000011111 2678888
Q ss_pred ccccccccCCcEEEEEecCCCccccHHHHHHHHHHCCCcEEEe
Q psy17793 220 WQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQ 262 (397)
Q Consensus 220 ~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~ 262 (397)
+.++|+|||.+++. + .....+.+..++++. ++..+.
T Consensus 367 --a~~~LkpgG~lilE---i-G~~Q~e~V~~ll~~~-Gf~~v~ 402 (423)
T PRK14966 367 --APDRLAEGGFLLLE---H-GFDQGAAVRGVLAEN-GFSGVE 402 (423)
T ss_pred --HHHhcCCCcEEEEE---E-CccHHHHHHHHHHHC-CCcEEE
Confidence 99999999998775 2 234455677777765 344433
No 38
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.41 E-value=5e-12 Score=123.09 Aligned_cols=139 Identities=19% Similarity=0.197 Sum_probs=98.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccchhhHHHhhhccc
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKE 164 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~~~~ 164 (397)
+.+|||+|||+|..++.++... +..+|+|+|+|+.+++.+++|++++++.+ ++++.+|.... +...
T Consensus 115 ~~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~------------~~~~ 181 (284)
T TIGR00536 115 ILHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP------------LAGQ 181 (284)
T ss_pred CCEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc------------CcCC
Confidence 3689999999999999999875 45799999999999999999999999865 99999998653 2223
Q ss_pred CccEEEEcCCCCCCCC---CcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCc
Q psy17793 165 SFDRILLDAPCSGFGQ---RPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSV 241 (397)
Q Consensus 165 ~fD~Il~DpPCSg~G~---~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~ 241 (397)
.||+|++|||+..... .++.........+...-..+. ..++++.. +.++|+|||.+++.+..
T Consensus 182 ~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~-~~~~ii~~-----------a~~~L~~gG~l~~e~g~--- 246 (284)
T TIGR00536 182 KIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLN-ILRQIIEL-----------APDYLKPNGFLVCEIGN--- 246 (284)
T ss_pred CccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHH-HHHHHHHH-----------HHHhccCCCEEEEEECc---
Confidence 7999999999977652 111111111000001111222 33788888 99999999999987543
Q ss_pred cccHHHHHHHHH
Q psy17793 242 EENEAVIAWILH 253 (397)
Q Consensus 242 eEnE~vV~~~L~ 253 (397)
...+.+..++.
T Consensus 247 -~q~~~~~~~~~ 257 (284)
T TIGR00536 247 -WQQKSLKELLR 257 (284)
T ss_pred -cHHHHHHHHHH
Confidence 23334555555
No 39
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=5e-12 Score=122.92 Aligned_cols=171 Identities=17% Similarity=0.161 Sum_probs=111.5
Q ss_pred cCCCcEEEechhHHHHHhcc-CCCCCC-eEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEE
Q psy17793 62 LDSSMGILQNLPSILAGHYL-DVQPGQ-KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQ 139 (397)
Q Consensus 62 ~~~g~~~~Qd~~S~l~~~~L-~~~~g~-~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~ 139 (397)
..++.++....+-.++-.++ ...... +|||+|||+|..++.+|... +...|+|+|+|+.+++.+++|++++|+.++.
T Consensus 85 v~~~vliPr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~ 163 (280)
T COG2890 85 VDEGVLIPRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALARENAERNGLVRVL 163 (280)
T ss_pred eCCCceecCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHHHHHcCCccEE
Confidence 34555555565655655543 222223 79999999999999999875 3469999999999999999999999987766
Q ss_pred EEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCC---CCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhc
Q psy17793 140 THVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVS 216 (397)
Q Consensus 140 ~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G---~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~ 216 (397)
++..|..... .++||+|++|||+-..- ..|+.........+...-..+.-. ++++..
T Consensus 164 ~~~~dlf~~~-------------~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~-~~i~~~------ 223 (280)
T COG2890 164 VVQSDLFEPL-------------RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVY-RRILGE------ 223 (280)
T ss_pred EEeeeccccc-------------CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHH-HHHHHh------
Confidence 6666765532 24899999999996654 122211111100010111233333 788888
Q ss_pred cccccccccccCCcEEEEEecCCCccccHHHHHHHHHHCCCcEEEe
Q psy17793 217 LFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQ 262 (397)
Q Consensus 217 ~~~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~ 262 (397)
+.++|++||.+++. ++ ....+.|..++.+.+.+..+.
T Consensus 224 -----a~~~l~~~g~l~le-~g---~~q~~~v~~~~~~~~~~~~v~ 260 (280)
T COG2890 224 -----APDILKPGGVLILE-IG---LTQGEAVKALFEDTGFFEIVE 260 (280)
T ss_pred -----hHHHcCCCcEEEEE-EC---CCcHHHHHHHHHhcCCceEEE
Confidence 99999999988875 22 233445666666664344343
No 40
>PRK04266 fibrillarin; Provisional
Probab=99.40 E-value=6.6e-12 Score=118.42 Aligned_cols=115 Identities=19% Similarity=0.297 Sum_probs=86.6
Q ss_pred HHHHHhc--cCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEccccccccc
Q psy17793 74 SILAGHY--LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTS 151 (397)
Q Consensus 74 S~l~~~~--L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~ 151 (397)
+.+++.+ +++++|++|||+|||+|.++.+++..++ .++|+|+|+++.+++.+.+++++. .||.++.+|+......
T Consensus 59 ~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~~~~~ 135 (226)
T PRK04266 59 AAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARKPERY 135 (226)
T ss_pred HHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCCcchh
Confidence 3444433 7788999999999999999999999875 689999999999999988887764 6789999998642100
Q ss_pred chhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcE
Q psy17793 152 SQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGI 231 (397)
Q Consensus 152 ~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~ 231 (397)
..+ .++||+|++|.+ . +.. ...+|++ +.++|||||.
T Consensus 136 -------~~l-~~~~D~i~~d~~--------------~----p~~-------~~~~L~~-----------~~r~LKpGG~ 171 (226)
T PRK04266 136 -------AHV-VEKVDVIYQDVA--------------Q----PNQ-------AEIAIDN-----------AEFFLKDGGY 171 (226)
T ss_pred -------hhc-cccCCEEEECCC--------------C----hhH-------HHHHHHH-----------HHHhcCCCcE
Confidence 012 256999998754 0 010 1335677 8899999999
Q ss_pred EEEE
Q psy17793 232 LVYC 235 (397)
Q Consensus 232 lvys 235 (397)
++.+
T Consensus 172 lvI~ 175 (226)
T PRK04266 172 LLLA 175 (226)
T ss_pred EEEE
Confidence 9984
No 41
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.40 E-value=3.3e-12 Score=119.26 Aligned_cols=99 Identities=22% Similarity=0.321 Sum_probs=82.0
Q ss_pred CCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEc
Q psy17793 64 SSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVY 143 (397)
Q Consensus 64 ~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~ 143 (397)
.|..+.+......+...+++++|++|||+|||+|..|..++.+++..++|+++|+++..++.++++++++|..++++..+
T Consensus 55 ~g~~~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~g 134 (212)
T PRK13942 55 YGQTISAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVG 134 (212)
T ss_pred CCCEeCcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEEC
Confidence 34444454445566677888999999999999999999999987767899999999999999999999999999999999
Q ss_pred ccccccccchhhHHHhhhcccCccEEEEcC
Q psy17793 144 DSTRINTSSQIDIERMKLQKESFDRILLDA 173 (397)
Q Consensus 144 D~~~~~~~~~~d~~~~~~~~~~fD~Il~Dp 173 (397)
|+.... .....||+|+++.
T Consensus 135 d~~~~~-----------~~~~~fD~I~~~~ 153 (212)
T PRK13942 135 DGTLGY-----------EENAPYDRIYVTA 153 (212)
T ss_pred CcccCC-----------CcCCCcCEEEECC
Confidence 987542 1336799999854
No 42
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.40 E-value=1.1e-11 Score=119.32 Aligned_cols=145 Identities=16% Similarity=0.137 Sum_probs=100.9
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhh
Q psy17793 82 DVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKL 161 (397)
Q Consensus 82 ~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~ 161 (397)
...++.+|||+|||+|..+..++... +...|+++|+|+.+++.+++|++.....++.++..|+... .
T Consensus 105 ~~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~------------~ 171 (275)
T PRK09328 105 LLKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP------------L 171 (275)
T ss_pred cccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc------------C
Confidence 34567899999999999999999876 4579999999999999999999844445799999998543 1
Q ss_pred cccCccEEEEcCCCCCCCC----CcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEec
Q psy17793 162 QKESFDRILLDAPCSGFGQ----RPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC 237 (397)
Q Consensus 162 ~~~~fD~Il~DpPCSg~G~----~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTC 237 (397)
..++||+|++||||...+. .++.........+... ..-.....+++.+ +.++||+||.+++.+-
T Consensus 172 ~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g-~~g~~~~~~~~~~-----------~~~~Lk~gG~l~~e~g 239 (275)
T PRK09328 172 PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGG-EDGLDFYRRIIEQ-----------APRYLKPGGWLLLEIG 239 (275)
T ss_pred CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCC-CCHHHHHHHHHHH-----------HHHhcccCCEEEEEEC
Confidence 2468999999999987652 2222211110000000 0112334778888 9999999999998532
Q ss_pred CCCccccHHHHHHHHHHC
Q psy17793 238 SLSVEENEAVIAWILHRH 255 (397)
Q Consensus 238 S~~~eEnE~vV~~~L~~~ 255 (397)
. ...+.+..++++.
T Consensus 240 ---~-~~~~~~~~~l~~~ 253 (275)
T PRK09328 240 ---Y-DQGEAVRALLAAA 253 (275)
T ss_pred ---c-hHHHHHHHHHHhC
Confidence 2 2233466666654
No 43
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.39 E-value=3.4e-12 Score=112.43 Aligned_cols=111 Identities=26% Similarity=0.334 Sum_probs=89.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793 84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK 163 (397)
Q Consensus 84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~ 163 (397)
+.+.+|||+|||+|..+..++..+.+.++++++|+|+.+++.+++++++++++++++.++|+.++. . . +.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~-~-------~-~~- 71 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLP-Q-------E-LE- 71 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGC-G-------C-SS-
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccc-c-------c-cC-
Confidence 467899999999999999999766678899999999999999999999999999999999998852 1 0 22
Q ss_pred cCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793 164 ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS 238 (397)
Q Consensus 164 ~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS 238 (397)
+.||+|+++.++. .. . ....+|+. +.++||+||+++.+.+.
T Consensus 72 ~~~D~I~~~~~l~----------~~------~-------~~~~~l~~-----------~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 72 EKFDIIISNGVLH----------HF------P-------DPEKVLKN-----------IIRLLKPGGILIISDPN 112 (152)
T ss_dssp TTEEEEEEESTGG----------GT------S-------HHHHHHHH-----------HHHHEEEEEEEEEEEEE
T ss_pred CCeeEEEEcCchh----------hc------c-------CHHHHHHH-----------HHHHcCCCcEEEEEECC
Confidence 6899999976630 00 1 11456667 89999999999988776
No 44
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.38 E-value=7.1e-12 Score=116.34 Aligned_cols=89 Identities=18% Similarity=0.275 Sum_probs=75.2
Q ss_pred HHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccch
Q psy17793 75 ILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQ 153 (397)
Q Consensus 75 ~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~ 153 (397)
......++++++++|||+|||+|..+..++.+++..++|+++|+++.+++.+++|++++++. ++++..+|+....
T Consensus 62 ~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~---- 137 (205)
T PRK13944 62 AMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGL---- 137 (205)
T ss_pred HHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCC----
Confidence 34456678889999999999999999999998766789999999999999999999999986 4899999987642
Q ss_pred hhHHHhhhcccCccEEEEcCC
Q psy17793 154 IDIERMKLQKESFDRILLDAP 174 (397)
Q Consensus 154 ~d~~~~~~~~~~fD~Il~DpP 174 (397)
....+||+|+++..
T Consensus 138 -------~~~~~fD~Ii~~~~ 151 (205)
T PRK13944 138 -------EKHAPFDAIIVTAA 151 (205)
T ss_pred -------ccCCCccEEEEccC
Confidence 12358999999754
No 45
>PTZ00146 fibrillarin; Provisional
Probab=99.38 E-value=1e-11 Score=120.50 Aligned_cols=117 Identities=24% Similarity=0.335 Sum_probs=86.4
Q ss_pred hHHHHHhc------cCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccc
Q psy17793 73 PSILAGHY------LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDST 146 (397)
Q Consensus 73 ~S~l~~~~------L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~ 146 (397)
-|.|++.+ +.+++|++|||+|||||.+|.++|..+++.++|+|+|+++.+++.+.+.+++. .||.++..|++
T Consensus 114 rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~ 191 (293)
T PTZ00146 114 RSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDAR 191 (293)
T ss_pred ccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCcc
Confidence 36666555 45789999999999999999999999987899999999988877776665543 57889999986
Q ss_pred cccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccc
Q psy17793 147 RINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLL 226 (397)
Q Consensus 147 ~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lL 226 (397)
.... .....++||+|++|.. .| . ..+.++.+ +.++|
T Consensus 192 ~p~~--------y~~~~~~vDvV~~Dva------~p------------d-------q~~il~~n-----------a~r~L 227 (293)
T PTZ00146 192 YPQK--------YRMLVPMVDVIFADVA------QP------------D-------QARIVALN-----------AQYFL 227 (293)
T ss_pred Chhh--------hhcccCCCCEEEEeCC------Cc------------c-------hHHHHHHH-----------HHHhc
Confidence 4310 0112357999999874 00 1 01234446 78899
Q ss_pred cCCcEEEEE
Q psy17793 227 KKDGILVYC 235 (397)
Q Consensus 227 kpgG~lvys 235 (397)
||||.++.+
T Consensus 228 KpGG~~vI~ 236 (293)
T PTZ00146 228 KNGGHFIIS 236 (293)
T ss_pred cCCCEEEEE
Confidence 999999884
No 46
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.37 E-value=1.2e-11 Score=103.77 Aligned_cols=111 Identities=19% Similarity=0.260 Sum_probs=88.3
Q ss_pred HhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHH
Q psy17793 78 GHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIE 157 (397)
Q Consensus 78 ~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~ 157 (397)
...+.+.++++|||+|||+|..+..++...+ .++|+++|.++.+++.++++++.+++.++++...|+.....
T Consensus 12 ~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~------- 83 (124)
T TIGR02469 12 LSKLRLRPGDVLWDIGAGSGSITIEAARLVP-NGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALE------- 83 (124)
T ss_pred HHHcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccCh-------
Confidence 3455677788999999999999999998764 47999999999999999999999998889998888764321
Q ss_pred HhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793 158 RMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT 236 (397)
Q Consensus 158 ~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT 236 (397)
....+||.|+++.+ ... ..++++. +.++|||||+++...
T Consensus 84 ---~~~~~~D~v~~~~~-------------------~~~-------~~~~l~~-----------~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 84 ---DSLPEPDRVFIGGS-------------------GGL-------LQEILEA-----------IWRRLRPGGRIVLNA 122 (124)
T ss_pred ---hhcCCCCEEEECCc-------------------chh-------HHHHHHH-----------HHHHcCCCCEEEEEe
Confidence 12357999998542 111 1367777 999999999998863
No 47
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.37 E-value=3.9e-12 Score=119.46 Aligned_cols=116 Identities=18% Similarity=0.280 Sum_probs=92.1
Q ss_pred HHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhh
Q psy17793 76 LAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQID 155 (397)
Q Consensus 76 l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d 155 (397)
.....+.++++++|||+|||+|..+..++...++.++|+++|+++.+++.+++++++.+.++++++.+|+....
T Consensus 36 ~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------ 109 (231)
T TIGR02752 36 DTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP------ 109 (231)
T ss_pred HHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC------
Confidence 34456678889999999999999999999887667899999999999999999999988888999999987652
Q ss_pred HHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793 156 IERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC 235 (397)
Q Consensus 156 ~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys 235 (397)
+..++||.|+++-.. ..... . .++|++ +.++|||||.++..
T Consensus 110 -----~~~~~fD~V~~~~~l-------------------~~~~~---~-~~~l~~-----------~~~~Lk~gG~l~~~ 150 (231)
T TIGR02752 110 -----FDDNSFDYVTIGFGL-------------------RNVPD---Y-MQVLRE-----------MYRVVKPGGKVVCL 150 (231)
T ss_pred -----CCCCCccEEEEeccc-------------------ccCCC---H-HHHHHH-----------HHHHcCcCeEEEEE
Confidence 345689999974320 00001 1 356777 89999999999876
Q ss_pred e
Q psy17793 236 T 236 (397)
Q Consensus 236 T 236 (397)
+
T Consensus 151 ~ 151 (231)
T TIGR02752 151 E 151 (231)
T ss_pred E
Confidence 3
No 48
>PRK14968 putative methyltransferase; Provisional
Probab=99.37 E-value=2e-11 Score=110.40 Aligned_cols=156 Identities=17% Similarity=0.146 Sum_probs=106.4
Q ss_pred HHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc--EEEEEccccccccc
Q psy17793 74 SILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS--IQTHVYDSTRINTS 151 (397)
Q Consensus 74 S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~--v~~~~~D~~~~~~~ 151 (397)
+.++...+...++.+|||+|||+|..+..++.. ...|+++|+|+.+++.+++++..++..+ +.+...|..+.
T Consensus 12 ~~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~--- 85 (188)
T PRK14968 12 SFLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP--- 85 (188)
T ss_pred HHHHHHhhhccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc---
Confidence 455556666678889999999999999999885 4789999999999999999999998866 88888887653
Q ss_pred chhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcE
Q psy17793 152 SQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGI 231 (397)
Q Consensus 152 ~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~ 231 (397)
+....||.|++|||+...+........+.. ...... .-......++++ +.++|||||.
T Consensus 86 ---------~~~~~~d~vi~n~p~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~i~~-----------~~~~Lk~gG~ 143 (188)
T PRK14968 86 ---------FRGDKFDVILFNPPYLPTEEEEEWDDWLNY-ALSGGK-DGREVIDRFLDE-----------VGRYLKPGGR 143 (188)
T ss_pred ---------ccccCceEEEECCCcCCCCchhhhhhhhhh-hhccCc-ChHHHHHHHHHH-----------HHHhcCCCeE
Confidence 233479999999998654321111000000 000000 001223567888 9999999999
Q ss_pred EEEEecCCCccccHHHHHHHHHHCCCcEEE
Q psy17793 232 LVYCTCSLSVEENEAVIAWILHRHPEVELV 261 (397)
Q Consensus 232 lvysTCS~~~eEnE~vV~~~L~~~~~~~l~ 261 (397)
+++..+++.. .+-+..++++. +++..
T Consensus 144 ~~~~~~~~~~---~~~l~~~~~~~-g~~~~ 169 (188)
T PRK14968 144 ILLLQSSLTG---EDEVLEYLEKL-GFEAE 169 (188)
T ss_pred EEEEEcccCC---HHHHHHHHHHC-CCeee
Confidence 9888766532 23445566665 45544
No 49
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.36 E-value=6e-12 Score=126.82 Aligned_cols=124 Identities=11% Similarity=0.106 Sum_probs=96.0
Q ss_pred chhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC---cEEEEEccccc
Q psy17793 71 NLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS---SIQTHVYDSTR 147 (397)
Q Consensus 71 d~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~---~v~~~~~D~~~ 147 (397)
|..+.+....+....+.+|||+|||+|..++.++... +..+|+++|+|+.+++.+++|++.++.. ++++...|+..
T Consensus 214 D~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~ 292 (378)
T PRK15001 214 DIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS 292 (378)
T ss_pred ChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc
Confidence 6778877777776666799999999999999998874 5679999999999999999999988753 67888888754
Q ss_pred ccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhcccccccccccc
Q psy17793 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLK 227 (397)
Q Consensus 148 ~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLk 227 (397)
. ....+||.|++|||+.- |. ..+ .. .-.+++.. +.++||
T Consensus 293 ~------------~~~~~fDlIlsNPPfh~-~~------~~~-----~~------ia~~l~~~-----------a~~~Lk 331 (378)
T PRK15001 293 G------------VEPFRFNAVLCNPPFHQ-QH------ALT-----DN------VAWEMFHH-----------ARRCLK 331 (378)
T ss_pred c------------CCCCCEEEEEECcCccc-Cc------cCC-----HH------HHHHHHHH-----------HHHhcc
Confidence 3 23357999999999532 10 011 11 12467888 999999
Q ss_pred CCcEEEEEe
Q psy17793 228 KDGILVYCT 236 (397)
Q Consensus 228 pgG~lvysT 236 (397)
|||.|++..
T Consensus 332 pGG~L~iV~ 340 (378)
T PRK15001 332 INGELYIVA 340 (378)
T ss_pred cCCEEEEEE
Confidence 999998874
No 50
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.36 E-value=1.3e-11 Score=112.57 Aligned_cols=125 Identities=22% Similarity=0.253 Sum_probs=95.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhccc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE 164 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~ 164 (397)
+|.+|||+|||+|..+..+|.. .+.++|+|+|.|+.+++.++++++++++++++++++|+..+. ..+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~-~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~------------~~~ 108 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIA-RPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ------------HEE 108 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHH-CCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc------------ccC
Confidence 4889999999999999988865 456799999999999999999999999988999999987652 236
Q ss_pred CccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCcccc
Q psy17793 165 SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244 (397)
Q Consensus 165 ~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~eEn 244 (397)
+||.|+++. +..+ ..+++. +.++|||||+++.. +....
T Consensus 109 ~fD~I~s~~-----------------------~~~~----~~~~~~-----------~~~~LkpgG~lvi~----~~~~~ 146 (181)
T TIGR00138 109 QFDVITSRA-----------------------LASL----NVLLEL-----------TLNLLKVGGYFLAY----KGKKY 146 (181)
T ss_pred CccEEEehh-----------------------hhCH----HHHHHH-----------HHHhcCCCCEEEEE----cCCCc
Confidence 899999742 1111 234555 78899999999975 44555
Q ss_pred HHHHHHHHHHCC--CcEEEecC
Q psy17793 245 EAVIAWILHRHP--EVELVQTL 264 (397)
Q Consensus 245 E~vV~~~L~~~~--~~~l~~~~ 264 (397)
+..+..+.++.- +++.++..
T Consensus 147 ~~~~~~~~e~~~~~~~~~~~~~ 168 (181)
T TIGR00138 147 LDEIEEAKRKCQVLGVEPLEVP 168 (181)
T ss_pred HHHHHHHHHhhhhcCceEeecc
Confidence 666666666643 45555543
No 51
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.36 E-value=8.2e-12 Score=120.23 Aligned_cols=118 Identities=19% Similarity=0.260 Sum_probs=90.0
Q ss_pred HHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH---hCCCcEEEEEcccccccccc
Q psy17793 76 LAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKK---LQLSSIQTHVYDSTRINTSS 152 (397)
Q Consensus 76 l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~---~g~~~v~~~~~D~~~~~~~~ 152 (397)
.+...+.+.++++|||+|||+|..+..++...+..++|+|+|+|+.+++.++++... .+..++++.++|+..+.
T Consensus 64 ~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp--- 140 (261)
T PLN02233 64 MAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP--- 140 (261)
T ss_pred HHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC---
Confidence 344566778899999999999999998888766667999999999999999877642 23457999999987763
Q ss_pred hhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEE
Q psy17793 153 QIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGIL 232 (397)
Q Consensus 153 ~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~l 232 (397)
+.+++||.|++.- + +..+.+. .++|++ +.++|||||++
T Consensus 141 --------~~~~sfD~V~~~~-----~-----------------l~~~~d~-~~~l~e-----------i~rvLkpGG~l 178 (261)
T PLN02233 141 --------FDDCYFDAITMGY-----G-----------------LRNVVDR-LKAMQE-----------MYRVLKPGSRV 178 (261)
T ss_pred --------CCCCCEeEEEEec-----c-----------------cccCCCH-HHHHHH-----------HHHHcCcCcEE
Confidence 4567899998611 1 1111111 557778 99999999999
Q ss_pred EEEecC
Q psy17793 233 VYCTCS 238 (397)
Q Consensus 233 vysTCS 238 (397)
+.++.+
T Consensus 179 ~i~d~~ 184 (261)
T PLN02233 179 SILDFN 184 (261)
T ss_pred EEEECC
Confidence 998554
No 52
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.35 E-value=5.1e-12 Score=120.31 Aligned_cols=97 Identities=21% Similarity=0.309 Sum_probs=74.9
Q ss_pred echhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccc
Q psy17793 70 QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRI 148 (397)
Q Consensus 70 Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~ 148 (397)
-.+...++...+++.||++||++|+|+|+.|..+|..+++.|+|+.+|..+++++.+++|++++|+. +|++...|....
T Consensus 25 YpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~ 104 (247)
T PF08704_consen 25 YPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEE 104 (247)
T ss_dssp -HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG
T ss_pred eCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecc
Confidence 3344456667899999999999999999999999999999999999999999999999999999996 699999998643
Q ss_pred cccchhhHHHhhhcccCccEEEEcCC
Q psy17793 149 NTSSQIDIERMKLQKESFDRILLDAP 174 (397)
Q Consensus 149 ~~~~~~d~~~~~~~~~~fD~Il~DpP 174 (397)
... ......||.|++|-|
T Consensus 105 g~~--------~~~~~~~DavfLDlp 122 (247)
T PF08704_consen 105 GFD--------EELESDFDAVFLDLP 122 (247)
T ss_dssp --S--------TT-TTSEEEEEEESS
T ss_pred ccc--------ccccCcccEEEEeCC
Confidence 100 012357999999998
No 53
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.35 E-value=7.6e-12 Score=124.87 Aligned_cols=129 Identities=19% Similarity=0.138 Sum_probs=98.0
Q ss_pred chhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccc
Q psy17793 71 NLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINT 150 (397)
Q Consensus 71 d~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~ 150 (397)
|..|.+....+......+|||+|||+|..+..++... +..+|+++|+|+.+++.+++|++++++. .++...|....
T Consensus 182 D~gt~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l~-~~~~~~D~~~~-- 257 (342)
T PRK09489 182 DVGSQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGLE-GEVFASNVFSD-- 257 (342)
T ss_pred CHHHHHHHHhccccCCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEcccccc--
Confidence 5677777776765556689999999999999998863 4568999999999999999999999875 46677776542
Q ss_pred cchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCc
Q psy17793 151 SSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDG 230 (397)
Q Consensus 151 ~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG 230 (397)
..++||.|++|||.- .|. .... . .-.++++. +.++|||||
T Consensus 258 -----------~~~~fDlIvsNPPFH-~g~-------------~~~~---~-~~~~~i~~-----------a~~~LkpgG 297 (342)
T PRK09489 258 -----------IKGRFDMIISNPPFH-DGI-------------QTSL---D-AAQTLIRG-----------AVRHLNSGG 297 (342)
T ss_pred -----------cCCCccEEEECCCcc-CCc-------------cccH---H-HHHHHHHH-----------HHHhcCcCC
Confidence 236799999999931 000 0111 1 11667888 999999999
Q ss_pred EEEEEecCCCccc
Q psy17793 231 ILVYCTCSLSVEE 243 (397)
Q Consensus 231 ~lvysTCS~~~eE 243 (397)
.+++.+.++.+.+
T Consensus 298 ~L~iVan~~l~y~ 310 (342)
T PRK09489 298 ELRIVANAFLPYP 310 (342)
T ss_pred EEEEEEeCCCChH
Confidence 9999988877654
No 54
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=1.3e-11 Score=119.43 Aligned_cols=125 Identities=18% Similarity=0.134 Sum_probs=100.6
Q ss_pred echhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEccccccc
Q psy17793 70 QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRIN 149 (397)
Q Consensus 70 Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~ 149 (397)
-|..|.++...|....+.+|||+|||-|-.++.+|... +..+|+-+|+|..+++.+++|++.+++++.+++..|.....
T Consensus 143 lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v 221 (300)
T COG2813 143 LDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPV 221 (300)
T ss_pred cChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccc
Confidence 47889999999998888899999999999999999985 47899999999999999999999999988766666665431
Q ss_pred ccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCC
Q psy17793 150 TSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKD 229 (397)
Q Consensus 150 ~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpg 229 (397)
. ++||.|++|||-. ....-...+-.+|+.. |.+.|++|
T Consensus 222 ------------~-~kfd~IisNPPfh------------------~G~~v~~~~~~~~i~~-----------A~~~L~~g 259 (300)
T COG2813 222 ------------E-GKFDLIISNPPFH------------------AGKAVVHSLAQEIIAA-----------AARHLKPG 259 (300)
T ss_pred ------------c-ccccEEEeCCCcc------------------CCcchhHHHHHHHHHH-----------HHHhhccC
Confidence 2 3899999999921 1111111222678888 99999999
Q ss_pred cEEEEEec
Q psy17793 230 GILVYCTC 237 (397)
Q Consensus 230 G~lvysTC 237 (397)
|.|....-
T Consensus 260 GeL~iVan 267 (300)
T COG2813 260 GELWIVAN 267 (300)
T ss_pred CEEEEEEc
Confidence 99988744
No 55
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.33 E-value=1.1e-11 Score=122.44 Aligned_cols=86 Identities=23% Similarity=0.312 Sum_probs=71.9
Q ss_pred ccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHh
Q psy17793 80 YLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERM 159 (397)
Q Consensus 80 ~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~ 159 (397)
.++..++.+|||+|||+|..+..+|.. ..+|+|+|+++.+++.+++|++.+|+++++++++|+..+..
T Consensus 168 ~l~~~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~--------- 235 (315)
T PRK03522 168 WVRELPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFAT--------- 235 (315)
T ss_pred HHHhcCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHH---------
Confidence 344446789999999999999999983 46899999999999999999999999889999999976521
Q ss_pred hhcccCccEEEEcCCCCCC
Q psy17793 160 KLQKESFDRILLDAPCSGF 178 (397)
Q Consensus 160 ~~~~~~fD~Il~DpPCSg~ 178 (397)
...+.||.|++|||++|.
T Consensus 236 -~~~~~~D~Vv~dPPr~G~ 253 (315)
T PRK03522 236 -AQGEVPDLVLVNPPRRGI 253 (315)
T ss_pred -hcCCCCeEEEECCCCCCc
Confidence 123469999999997763
No 56
>KOG1540|consensus
Probab=99.33 E-value=7.5e-12 Score=117.46 Aligned_cols=138 Identities=20% Similarity=0.313 Sum_probs=106.8
Q ss_pred HHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCC-----cEEEEEeCCHHHHHHHHHHHHHhCCC---cEEEEEcccccc
Q psy17793 77 AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDT-----GTLIALDKSKPRVTKLEETIKKLQLS---SIQTHVYDSTRI 148 (397)
Q Consensus 77 ~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~-----~~V~avD~s~~rl~~l~~n~~~~g~~---~v~~~~~D~~~~ 148 (397)
.+..|.|.+|.++||+|+|+|-.|..+....... ++|+.+|+|+.++...+++.++.++. .++++++|+.++
T Consensus 92 ~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L 171 (296)
T KOG1540|consen 92 FVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL 171 (296)
T ss_pred hhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC
Confidence 4556788899999999999999999999887653 89999999999999999999887764 388999999887
Q ss_pred cccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccC
Q psy17793 149 NTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKK 228 (397)
Q Consensus 149 ~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkp 228 (397)
+ |...+||...+ +.| ++..... .+.|++ |.+.|||
T Consensus 172 p-----------Fdd~s~D~yTi-----afG-----------------IRN~th~-~k~l~E-----------AYRVLKp 206 (296)
T KOG1540|consen 172 P-----------FDDDSFDAYTI-----AFG-----------------IRNVTHI-QKALRE-----------AYRVLKP 206 (296)
T ss_pred C-----------CCCCcceeEEE-----ecc-----------------eecCCCH-HHHHHH-----------HHHhcCC
Confidence 3 77889999876 222 2222223 456777 9999999
Q ss_pred CcEEEEEecCCCccccHHHHHHHHHHCCCcEEEec
Q psy17793 229 DGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263 (397)
Q Consensus 229 gG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~~ 263 (397)
||++. |--.+.+|.+.+.++.+.+ .+..+|.
T Consensus 207 GGrf~---cLeFskv~~~~l~~fy~~y-sf~Vlpv 237 (296)
T KOG1540|consen 207 GGRFS---CLEFSKVENEPLKWFYDQY-SFDVLPV 237 (296)
T ss_pred CcEEE---EEEccccccHHHHHHHHhh-hhhhhch
Confidence 99987 4444455544888888877 4666554
No 57
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.32 E-value=7.4e-12 Score=116.64 Aligned_cols=101 Identities=19% Similarity=0.340 Sum_probs=79.0
Q ss_pred CCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEc
Q psy17793 64 SSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVY 143 (397)
Q Consensus 64 ~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~ 143 (397)
.|..+.|-..-......|++++|++|||+|||+|..|..+|.+.+..++|+++|+++...+.+++++++++..||.+..+
T Consensus 51 ~~~~is~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~g 130 (209)
T PF01135_consen 51 CGQTISAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVG 130 (209)
T ss_dssp TTEEE--HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES
T ss_pred ceeechHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEc
Confidence 34444444444556677889999999999999999999999999888899999999999999999999999999999999
Q ss_pred ccccccccchhhHHHhhhcccCccEEEEcCCC
Q psy17793 144 DSTRINTSSQIDIERMKLQKESFDRILLDAPC 175 (397)
Q Consensus 144 D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPC 175 (397)
|...-.. ....||+|++.+.|
T Consensus 131 dg~~g~~-----------~~apfD~I~v~~a~ 151 (209)
T PF01135_consen 131 DGSEGWP-----------EEAPFDRIIVTAAV 151 (209)
T ss_dssp -GGGTTG-----------GG-SEEEEEESSBB
T ss_pred chhhccc-----------cCCCcCEEEEeecc
Confidence 9875431 23579999997653
No 58
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.32 E-value=2.6e-11 Score=111.15 Aligned_cols=122 Identities=20% Similarity=0.235 Sum_probs=92.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793 84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK 163 (397)
Q Consensus 84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~ 163 (397)
+++.+|||+|||+|..+..+|... +.++|+++|+++.+++.+++++++++++++++..+|+.... . .
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~-----------~-~ 110 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFG-----------Q-E 110 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCC-----------C-C
Confidence 348899999999999999888764 56899999999999999999999999988999999987652 2 4
Q ss_pred cCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCccc
Q psy17793 164 ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEE 243 (397)
Q Consensus 164 ~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~eE 243 (397)
++||+|+++.= .++ ..+++. +.++|||||++++.... .
T Consensus 111 ~~fDlV~~~~~----------------~~~-----------~~~l~~-----------~~~~LkpGG~lv~~~~~----~ 148 (187)
T PRK00107 111 EKFDVVTSRAV----------------ASL-----------SDLVEL-----------CLPLLKPGGRFLALKGR----D 148 (187)
T ss_pred CCccEEEEccc----------------cCH-----------HHHHHH-----------HHHhcCCCeEEEEEeCC----C
Confidence 68999998420 011 345666 88999999999987544 2
Q ss_pred cHHHHHHHHHHCCCcEEE
Q psy17793 244 NEAVIAWILHRHPEVELV 261 (397)
Q Consensus 244 nE~vV~~~L~~~~~~~l~ 261 (397)
.+..+..+.+.. ++.+.
T Consensus 149 ~~~~l~~~~~~~-~~~~~ 165 (187)
T PRK00107 149 PEEEIAELPKAL-GGKVE 165 (187)
T ss_pred hHHHHHHHHHhc-CceEe
Confidence 333444444444 45543
No 59
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.30 E-value=2.1e-11 Score=125.92 Aligned_cols=89 Identities=25% Similarity=0.387 Sum_probs=74.1
Q ss_pred hccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHH
Q psy17793 79 HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIER 158 (397)
Q Consensus 79 ~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~ 158 (397)
..+.+.++++|||+|||+|..+..+|.. ..+|+|+|+|+.+++.+++|++.+|++++++.++|+......
T Consensus 291 ~~l~~~~~~~VLDlgcGtG~~sl~la~~---~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~------- 360 (443)
T PRK13168 291 EWLDPQPGDRVLDLFCGLGNFTLPLARQ---AAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTD------- 360 (443)
T ss_pred HHhcCCCCCEEEEEeccCCHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhh-------
Confidence 3456678899999999999999999885 368999999999999999999999999999999998754211
Q ss_pred hhhcccCccEEEEcCCCCC
Q psy17793 159 MKLQKESFDRILLDAPCSG 177 (397)
Q Consensus 159 ~~~~~~~fD~Il~DpPCSg 177 (397)
.++..++||+|++|||++|
T Consensus 361 ~~~~~~~fD~Vi~dPPr~g 379 (443)
T PRK13168 361 QPWALGGFDKVLLDPPRAG 379 (443)
T ss_pred hhhhcCCCCEEEECcCCcC
Confidence 1123457999999999776
No 60
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=3.1e-11 Score=117.24 Aligned_cols=138 Identities=20% Similarity=0.241 Sum_probs=99.7
Q ss_pred hhHHHHHhccC--CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccc
Q psy17793 72 LPSILAGHYLD--VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRI 148 (397)
Q Consensus 72 ~~S~l~~~~L~--~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~ 148 (397)
++..++..+|+ .++|.+|||+|||+|..++.++.+ +..+|+|+|+|+.+++.+++|+++++++. +.....+....
T Consensus 147 pTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kL--GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~ 224 (300)
T COG2264 147 PTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKL--GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEV 224 (300)
T ss_pred hhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHc--CCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhh
Confidence 45566666665 468999999999999999766664 67889999999999999999999999875 22222222221
Q ss_pred cccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccC
Q psy17793 149 NTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKK 228 (397)
Q Consensus 149 ~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkp 228 (397)
...++||+|++|- +++.-.++... +.++|||
T Consensus 225 ------------~~~~~~DvIVANI--------------------------LA~vl~~La~~-----------~~~~lkp 255 (300)
T COG2264 225 ------------PENGPFDVIVANI--------------------------LAEVLVELAPD-----------IKRLLKP 255 (300)
T ss_pred ------------cccCcccEEEehh--------------------------hHHHHHHHHHH-----------HHHHcCC
Confidence 1336899999832 22222445555 8899999
Q ss_pred CcEEEEEecCCCccccHHHHHHHHHHCCCcEEEecC
Q psy17793 229 DGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL 264 (397)
Q Consensus 229 gG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~~~ 264 (397)
||+++.| -+..+. ++.|...+++. ++++++..
T Consensus 256 gg~lIlS--GIl~~q-~~~V~~a~~~~-gf~v~~~~ 287 (300)
T COG2264 256 GGRLILS--GILEDQ-AESVAEAYEQA-GFEVVEVL 287 (300)
T ss_pred CceEEEE--eehHhH-HHHHHHHHHhC-CCeEeEEE
Confidence 9999998 466555 56666667665 68887764
No 61
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.29 E-value=4.5e-11 Score=110.74 Aligned_cols=117 Identities=21% Similarity=0.218 Sum_probs=87.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEccc-ccccccchhhHHHhhhcc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDS-TRINTSSQIDIERMKLQK 163 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~-~~~~~~~~~d~~~~~~~~ 163 (397)
++.+|||+|||+|..+..++... +..+|+|+|+|+.+++.++++++..++.+++++++|+ ..+. ..+..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~---------~~~~~ 109 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLL---------DMFPD 109 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHH---------HHcCc
Confidence 57799999999999999999875 4568999999999999999999999988899999998 4431 01345
Q ss_pred cCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEec
Q psy17793 164 ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC 237 (397)
Q Consensus 164 ~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTC 237 (397)
++||.|+++.|. |..... ..... ..+..+|++ +.++|||||.++++|+
T Consensus 110 ~~~D~V~~~~~~------p~~~~~-------~~~~~--~~~~~~l~~-----------i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 110 GSLDRIYLNFPD------PWPKKR-------HHKRR--LVQPEFLAL-----------YARKLKPGGEIHFATD 157 (202)
T ss_pred cccceEEEECCC------CCCCcc-------ccccc--cCCHHHHHH-----------HHHHcCCCCEEEEEcC
Confidence 689999996541 110000 00000 023667788 9999999999999854
No 62
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.29 E-value=3.6e-11 Score=125.93 Aligned_cols=139 Identities=17% Similarity=0.238 Sum_probs=99.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccchhhHHHhhhcc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQIDIERMKLQK 163 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~~d~~~~~~~~ 163 (397)
++.+|||+|||+|..+..++... +..+|+|+|+|+.+++.+++|++++++. ++.++.+|+... ...
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~------------~~~ 204 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN------------IEK 204 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh------------CcC
Confidence 34689999999999999888865 4579999999999999999999999985 588999987543 223
Q ss_pred cCccEEEEcCCCCCCCCCccc----ccccCccch---HHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793 164 ESFDRILLDAPCSGFGQRPMF----YNANSFLNL---DKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT 236 (397)
Q Consensus 164 ~~fD~Il~DpPCSg~G~~p~~----~~~~s~~~~---~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT 236 (397)
++||+|++|||+......+.. ........+ ...+..+ ++++.. +.++|+|||.+++.
T Consensus 205 ~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~----~~il~~-----------a~~~L~~gG~l~lE- 268 (506)
T PRK01544 205 QKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAY----FIIAEN-----------AKQFLKPNGKIILE- 268 (506)
T ss_pred CCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHH----HHHHHH-----------HHHhccCCCEEEEE-
Confidence 579999999999876532211 111110000 1222222 778888 99999999999875
Q ss_pred cCCCccccHHHHHHHHHHC
Q psy17793 237 CSLSVEENEAVIAWILHRH 255 (397)
Q Consensus 237 CS~~~eEnE~vV~~~L~~~ 255 (397)
+. ....+.|..++++.
T Consensus 269 ig---~~q~~~v~~~~~~~ 284 (506)
T PRK01544 269 IG---FKQEEAVTQIFLDH 284 (506)
T ss_pred EC---CchHHHHHHHHHhc
Confidence 22 23444566666665
No 63
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.29 E-value=2.1e-11 Score=125.39 Aligned_cols=90 Identities=16% Similarity=0.171 Sum_probs=73.9
Q ss_pred HhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHH
Q psy17793 78 GHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIE 157 (397)
Q Consensus 78 ~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~ 157 (397)
...+.+.++++|||+|||+|..++.+|.. ..+|+|+|+++.+++.+++|++.+|++|++++.+|+......
T Consensus 285 ~~~l~~~~~~~vLDl~cG~G~~sl~la~~---~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~------ 355 (431)
T TIGR00479 285 LEALELQGEELVVDAYCGVGTFTLPLAKQ---AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPK------ 355 (431)
T ss_pred HHHhccCCCCEEEEcCCCcCHHHHHHHHh---CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHH------
Confidence 34456678899999999999999999885 358999999999999999999999999999999998764211
Q ss_pred HhhhcccCccEEEEcCCCCC
Q psy17793 158 RMKLQKESFDRILLDAPCSG 177 (397)
Q Consensus 158 ~~~~~~~~fD~Il~DpPCSg 177 (397)
..+...+||+|++|||.+|
T Consensus 356 -~~~~~~~~D~vi~dPPr~G 374 (431)
T TIGR00479 356 -QPWAGQIPDVLLLDPPRKG 374 (431)
T ss_pred -HHhcCCCCCEEEECcCCCC
Confidence 1122357999999999765
No 64
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.29 E-value=2.7e-11 Score=116.89 Aligned_cols=112 Identities=18% Similarity=0.289 Sum_probs=89.0
Q ss_pred ccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHh
Q psy17793 80 YLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERM 159 (397)
Q Consensus 80 ~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~ 159 (397)
...+.+|++|||+|||+|..+..++..++..++|+++|+++.+++.++++.+.+++.++++..+|+..+.
T Consensus 72 ~~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~---------- 141 (272)
T PRK11873 72 LAELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALP---------- 141 (272)
T ss_pred hccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCC----------
Confidence 3456789999999999999888888877667899999999999999999999999989999999886642
Q ss_pred hhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793 160 KLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT 236 (397)
Q Consensus 160 ~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT 236 (397)
+..+.||+|+++.-. .+. .. . .+++++ +.++|||||+|+++.
T Consensus 142 -~~~~~fD~Vi~~~v~-----------~~~----~d-------~-~~~l~~-----------~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 142 -VADNSVDVIISNCVI-----------NLS----PD-------K-ERVFKE-----------AFRVLKPGGRFAISD 183 (272)
T ss_pred -CCCCceeEEEEcCcc-----------cCC----CC-------H-HHHHHH-----------HHHHcCCCcEEEEEE
Confidence 345689999975310 000 00 0 456777 999999999999874
No 65
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=2.3e-11 Score=112.16 Aligned_cols=98 Identities=16% Similarity=0.324 Sum_probs=84.1
Q ss_pred CCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEE
Q psy17793 63 DSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHV 142 (397)
Q Consensus 63 ~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~ 142 (397)
..|.++.|-.--.....+|++++|++||++|||+|..|..+|++. ++|+++|+++.-.+.+++|++.+|..||.+.+
T Consensus 50 ~~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~ 126 (209)
T COG2518 50 GCGQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYENVTVRH 126 (209)
T ss_pred CCCceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEE
Confidence 466666676666677789999999999999999999999999985 49999999999999999999999999999999
Q ss_pred cccccccccchhhHHHhhhcccCccEEEEcCC
Q psy17793 143 YDSTRINTSSQIDIERMKLQKESFDRILLDAP 174 (397)
Q Consensus 143 ~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpP 174 (397)
+|...-.. ....||+|++.+-
T Consensus 127 gDG~~G~~-----------~~aPyD~I~Vtaa 147 (209)
T COG2518 127 GDGSKGWP-----------EEAPYDRIIVTAA 147 (209)
T ss_pred CCcccCCC-----------CCCCcCEEEEeec
Confidence 99976531 2368999998553
No 66
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.27 E-value=1.7e-11 Score=120.60 Aligned_cols=127 Identities=20% Similarity=0.243 Sum_probs=99.1
Q ss_pred hhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEc-ccccccc
Q psy17793 72 LPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVY-DSTRINT 150 (397)
Q Consensus 72 ~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~-D~~~~~~ 150 (397)
.-|...+.+..+++|+.|||-.||||++...+.- + +.+++|+|++..+++-++.|++.+|++...+... |++++.
T Consensus 184 ~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl-~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp- 259 (347)
T COG1041 184 RLARAMVNLARVKRGELVLDPFCGTGGILIEAGL-M--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP- 259 (347)
T ss_pred HHHHHHHHHhccccCCEeecCcCCccHHHHhhhh-c--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCC-
Confidence 3355667777899999999999999999976544 3 5799999999999999999999999988766666 998873
Q ss_pred cchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCc
Q psy17793 151 SSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDG 230 (397)
Q Consensus 151 ~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG 230 (397)
+...+||.|++|||+--+-. .....+.++-.++|+. +.+.||+||
T Consensus 260 ----------l~~~~vdaIatDPPYGrst~--------------~~~~~l~~Ly~~~le~-----------~~evLk~gG 304 (347)
T COG1041 260 ----------LRDNSVDAIATDPPYGRSTK--------------IKGEGLDELYEEALES-----------ASEVLKPGG 304 (347)
T ss_pred ----------CCCCccceEEecCCCCcccc--------------cccccHHHHHHHHHHH-----------HHHHhhcCc
Confidence 45557999999999622110 1111234445778888 999999999
Q ss_pred EEEEEec
Q psy17793 231 ILVYCTC 237 (397)
Q Consensus 231 ~lvysTC 237 (397)
++|+.+-
T Consensus 305 ~~vf~~p 311 (347)
T COG1041 305 RIVFAAP 311 (347)
T ss_pred EEEEecC
Confidence 9999843
No 67
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.27 E-value=4.1e-11 Score=110.21 Aligned_cols=141 Identities=18% Similarity=0.240 Sum_probs=99.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhccc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE 164 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~ 164 (397)
...+|||+|||+|..+..+|... +...|+|+|+++.+++.+++++++.++.|++++++|+..+... .+..+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~--------~~~~~ 86 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDK--------FFPDG 86 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHh--------hCCCC
Confidence 45699999999999999999874 5679999999999999999999999999999999999765311 12345
Q ss_pred CccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCcccc
Q psy17793 165 SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244 (397)
Q Consensus 165 ~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~eEn 244 (397)
.||.|+++.| .|....... ...+ .+..+++. +.++|||||.|.++|-. ..-.
T Consensus 87 ~~d~v~~~~p------dpw~k~~h~----~~r~-----~~~~~l~~-----------~~r~LkpgG~l~~~td~--~~~~ 138 (194)
T TIGR00091 87 SLSKVFLNFP------DPWPKKRHN----KRRI-----TQPHFLKE-----------YANVLKKGGVIHFKTDN--EPLF 138 (194)
T ss_pred ceeEEEEECC------CcCCCCCcc----cccc-----CCHHHHHH-----------HHHHhCCCCEEEEEeCC--HHHH
Confidence 8999999876 222111110 0111 12567777 89999999999987522 1112
Q ss_pred HHHHHHHHHHCCCcEEEec
Q psy17793 245 EAVIAWILHRHPEVELVQT 263 (397)
Q Consensus 245 E~vV~~~L~~~~~~~l~~~ 263 (397)
+ .+...+..+++++....
T Consensus 139 ~-~~~~~~~~~~~f~~~~~ 156 (194)
T TIGR00091 139 E-DMLKVLSENDLFENTSK 156 (194)
T ss_pred H-HHHHHHHhCCCeEeccc
Confidence 2 23344555666666543
No 68
>PLN02244 tocopherol O-methyltransferase
Probab=99.26 E-value=3.4e-11 Score=120.23 Aligned_cols=108 Identities=13% Similarity=0.156 Sum_probs=86.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccchhhHHHhhhc
Q psy17793 84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQIDIERMKLQ 162 (397)
Q Consensus 84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~~d~~~~~~~ 162 (397)
+++++|||+|||+|+.+..++... +.+|+|+|+|+.+++.+++++++.|+. ++++..+|+.... +.
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~-----------~~ 183 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQP-----------FE 183 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCC-----------CC
Confidence 678899999999999999999864 469999999999999999999998874 6999999997652 45
Q ss_pred ccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793 163 KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS 238 (397)
Q Consensus 163 ~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS 238 (397)
.++||+|++.- .+.++.+. .+++++ +.++|||||+|+.+++.
T Consensus 184 ~~~FD~V~s~~----------------------~~~h~~d~-~~~l~e-----------~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 184 DGQFDLVWSME----------------------SGEHMPDK-RKFVQE-----------LARVAAPGGRIIIVTWC 225 (340)
T ss_pred CCCccEEEECC----------------------chhccCCH-HHHHHH-----------HHHHcCCCcEEEEEEec
Confidence 67899999721 11111111 467777 89999999999998753
No 69
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.26 E-value=1e-10 Score=108.83 Aligned_cols=96 Identities=22% Similarity=0.303 Sum_probs=76.8
Q ss_pred CcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcc
Q psy17793 65 SMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144 (397)
Q Consensus 65 g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D 144 (397)
|..+.+......+...+.++++++|||+|||+|..+..++.+. ++|+++|+++.+++.++++++++++.++++..+|
T Consensus 58 ~~~~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d 134 (212)
T PRK00312 58 GQTISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGD 134 (212)
T ss_pred CCeeCcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECC
Confidence 3333444444455667888999999999999999999888763 4899999999999999999999999999999999
Q ss_pred cccccccchhhHHHhhhcccCccEEEEcCC
Q psy17793 145 STRINTSSQIDIERMKLQKESFDRILLDAP 174 (397)
Q Consensus 145 ~~~~~~~~~~d~~~~~~~~~~fD~Il~DpP 174 (397)
+.... ...+.||+|+++++
T Consensus 135 ~~~~~-----------~~~~~fD~I~~~~~ 153 (212)
T PRK00312 135 GWKGW-----------PAYAPFDRILVTAA 153 (212)
T ss_pred cccCC-----------CcCCCcCEEEEccC
Confidence 85432 12367999999875
No 70
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.26 E-value=1.1e-10 Score=106.73 Aligned_cols=131 Identities=21% Similarity=0.231 Sum_probs=85.9
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhh
Q psy17793 81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMK 160 (397)
Q Consensus 81 L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~ 160 (397)
-.+++|++|||+|||||+.+.+++......++|+++|+|+.+ ...++++++.|+...... +.-...
T Consensus 28 ~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~---~~l~~~ 93 (188)
T TIGR00438 28 KLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVL---NKIRER 93 (188)
T ss_pred cccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHH---HHHHHH
Confidence 345789999999999999999999887667799999999864 234678888887653100 000011
Q ss_pred hcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCC
Q psy17793 161 LQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLS 240 (397)
Q Consensus 161 ~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~ 240 (397)
+..++||+|++|+++...|. |+ ....... ..+.++|.. +.++|+|||+++... +.
T Consensus 94 ~~~~~~D~V~~~~~~~~~g~-------~~----~~~~~~~-~~~~~~l~~-----------~~~~LkpgG~lvi~~--~~ 148 (188)
T TIGR00438 94 VGDDKVDVVMSDAAPNISGY-------WD----IDHLRSI-DLVELALDI-----------AKEVLKPKGNFVVKV--FQ 148 (188)
T ss_pred hCCCCccEEEcCCCCCCCCC-------cc----ccHHHHH-HHHHHHHHH-----------HHHHccCCCEEEEEE--cc
Confidence 33457999999975332221 22 1111111 235778888 999999999999863 33
Q ss_pred ccccHHHHHH
Q psy17793 241 VEENEAVIAW 250 (397)
Q Consensus 241 ~eEnE~vV~~ 250 (397)
.++-++++..
T Consensus 149 ~~~~~~~l~~ 158 (188)
T TIGR00438 149 GEEIDEYLNE 158 (188)
T ss_pred CccHHHHHHH
Confidence 3443445543
No 71
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=3.7e-11 Score=123.12 Aligned_cols=91 Identities=18% Similarity=0.230 Sum_probs=77.4
Q ss_pred HHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH
Q psy17793 77 AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI 156 (397)
Q Consensus 77 ~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~ 156 (397)
+...++..++++|||+.||.|++|+++|. ...+|+|+|+++.+++.+++|++.+|++|+.+..+|+..+...
T Consensus 285 a~~~~~~~~~~~vlDlYCGvG~f~l~lA~---~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~----- 356 (432)
T COG2265 285 ALEWLELAGGERVLDLYCGVGTFGLPLAK---RVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPA----- 356 (432)
T ss_pred HHHHHhhcCCCEEEEeccCCChhhhhhcc---cCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhh-----
Confidence 45566778889999999999999999996 4579999999999999999999999999999999999877422
Q ss_pred HHhhhcccCccEEEEcCCCCCC
Q psy17793 157 ERMKLQKESFDRILLDAPCSGF 178 (397)
Q Consensus 157 ~~~~~~~~~fD~Il~DpPCSg~ 178 (397)
+.....+|.|++|||-+|.
T Consensus 357 ---~~~~~~~d~VvvDPPR~G~ 375 (432)
T COG2265 357 ---WWEGYKPDVVVVDPPRAGA 375 (432)
T ss_pred ---ccccCCCCEEEECCCCCCC
Confidence 1123579999999997664
No 72
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.24 E-value=6.2e-11 Score=115.75 Aligned_cols=135 Identities=24% Similarity=0.288 Sum_probs=93.4
Q ss_pred hhHHHHHhccC--CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEccccccc
Q psy17793 72 LPSILAGHYLD--VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRIN 149 (397)
Q Consensus 72 ~~S~l~~~~L~--~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~ 149 (397)
++..++..+|. ..+|++|||+|||+|..++..+.+ +..+|+|+|+|+.+++.+++|++.+|+.. ++.......
T Consensus 146 ~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~kl--GA~~v~a~DiDp~Av~~a~~N~~~N~~~~-~~~v~~~~~-- 220 (295)
T PF06325_consen 146 PTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKL--GAKKVVAIDIDPLAVEAARENAELNGVED-RIEVSLSED-- 220 (295)
T ss_dssp HHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHT--TBSEEEEEESSCHHHHHHHHHHHHTT-TT-CEEESCTSC--
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHHcCCCe-eEEEEEecc--
Confidence 44555555554 568899999999999999766554 56799999999999999999999999976 332222111
Q ss_pred ccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCC
Q psy17793 150 TSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKD 229 (397)
Q Consensus 150 ~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpg 229 (397)
...++||+|++|== ...+ ..++.. ..++|+||
T Consensus 221 -----------~~~~~~dlvvANI~-------------------~~vL-------~~l~~~-----------~~~~l~~~ 252 (295)
T PF06325_consen 221 -----------LVEGKFDLVVANIL-------------------ADVL-------LELAPD-----------IASLLKPG 252 (295)
T ss_dssp -----------TCCS-EEEEEEES--------------------HHHH-------HHHHHH-----------CHHHEEEE
T ss_pred -----------cccccCCEEEECCC-------------------HHHH-------HHHHHH-----------HHHhhCCC
Confidence 13378999998431 2333 334444 78899999
Q ss_pred cEEEEEecCCCccccHHHHHHHHHHCCCcEEEecC
Q psy17793 230 GILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL 264 (397)
Q Consensus 230 G~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~~~ 264 (397)
|.++.| -+..++.+++++.+ ++ +++++...
T Consensus 253 G~lIlS--GIl~~~~~~v~~a~-~~--g~~~~~~~ 282 (295)
T PF06325_consen 253 GYLILS--GILEEQEDEVIEAY-KQ--GFELVEER 282 (295)
T ss_dssp EEEEEE--EEEGGGHHHHHHHH-HT--TEEEEEEE
T ss_pred CEEEEc--cccHHHHHHHHHHH-HC--CCEEEEEE
Confidence 999998 66766666666554 54 68876543
No 73
>KOG2904|consensus
Probab=99.24 E-value=9.1e-11 Score=111.13 Aligned_cols=151 Identities=17% Similarity=0.168 Sum_probs=105.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccchhhHHHhhhcc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQK 163 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~~~ 163 (397)
.+..+||+|||+|..++.++.-++ .++|+|+|+|+.++..+.+|++++++.+ +.+++.+...-... + .+...
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~----~--~~l~~ 220 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASD----E--HPLLE 220 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccccccc----c--ccccc
Confidence 355899999999999999999875 7899999999999999999999999876 77775543221000 0 01245
Q ss_pred cCccEEEEcCCCCCCC----CCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCC
Q psy17793 164 ESFDRILLDAPCSGFG----QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSL 239 (397)
Q Consensus 164 ~~fD~Il~DpPCSg~G----~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~ 239 (397)
++.|++++|||+-..- ..|++......+.+......+..+ ..++.- |.++|++||.+++.+-.
T Consensus 221 ~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~-~~~~~~-----------a~R~Lq~gg~~~le~~~- 287 (328)
T KOG2904|consen 221 GKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNL-VHYWLL-----------ATRMLQPGGFEQLELVE- 287 (328)
T ss_pred CceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHH-HHHHHh-----------hHhhcccCCeEEEEecc-
Confidence 7899999999997764 355554444422332333333322 455555 99999999999998542
Q ss_pred CccccHHHHHHHHHHCC
Q psy17793 240 SVEENEAVIAWILHRHP 256 (397)
Q Consensus 240 ~~eEnE~vV~~~L~~~~ 256 (397)
..+....|..++...+
T Consensus 288 -~~~~~~lv~~~m~s~~ 303 (328)
T KOG2904|consen 288 -RKEHSYLVRIWMISLK 303 (328)
T ss_pred -cccCcHHHHHHHHhch
Confidence 2455567777766543
No 74
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.24 E-value=7.2e-11 Score=109.24 Aligned_cols=80 Identities=11% Similarity=0.113 Sum_probs=67.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793 84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK 163 (397)
Q Consensus 84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~ 163 (397)
.++.+|||+|||+|..++.+++. ...+|+++|+++..++.+++|++.+|+++++++++|+..... ...
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr--~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~----------~~~ 119 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSR--YAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLA----------QPG 119 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHh----------hcC
Confidence 56789999999999999865553 357999999999999999999999999899999999876421 123
Q ss_pred cCccEEEEcCCC
Q psy17793 164 ESFDRILLDAPC 175 (397)
Q Consensus 164 ~~fD~Il~DpPC 175 (397)
+.||+|++|||+
T Consensus 120 ~~fDlV~~DPPy 131 (199)
T PRK10909 120 TPHNVVFVDPPF 131 (199)
T ss_pred CCceEEEECCCC
Confidence 469999999994
No 75
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.24 E-value=9.8e-11 Score=111.04 Aligned_cols=125 Identities=19% Similarity=0.203 Sum_probs=96.2
Q ss_pred hhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccc
Q psy17793 72 LPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINT 150 (397)
Q Consensus 72 ~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~ 150 (397)
....++..++...+..+|||+|+|+|.-++.+|..+.+.++|+++|+++++++.+++|++++|+. +|+++.+|+.+...
T Consensus 55 ~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~ 134 (234)
T PLN02781 55 DEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALD 134 (234)
T ss_pred HHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHH
Confidence 34456666666777889999999999999999998877899999999999999999999999986 49999999977531
Q ss_pred cchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCc
Q psy17793 151 SSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDG 230 (397)
Q Consensus 151 ~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG 230 (397)
.. ......++||.|++|++ +... ..++.. +.++|||||
T Consensus 135 ~l-----~~~~~~~~fD~VfiDa~-------------------k~~y-------~~~~~~-----------~~~ll~~GG 172 (234)
T PLN02781 135 QL-----LNNDPKPEFDFAFVDAD-------------------KPNY-------VHFHEQ-----------LLKLVKVGG 172 (234)
T ss_pred HH-----HhCCCCCCCCEEEECCC-------------------HHHH-------HHHHHH-----------HHHhcCCCe
Confidence 10 00011358999999986 2222 234555 888999999
Q ss_pred EEEEEecC
Q psy17793 231 ILVYCTCS 238 (397)
Q Consensus 231 ~lvysTCS 238 (397)
.|+...+-
T Consensus 173 ~ii~dn~l 180 (234)
T PLN02781 173 IIAFDNTL 180 (234)
T ss_pred EEEEEcCC
Confidence 99876543
No 76
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=2.3e-10 Score=103.42 Aligned_cols=139 Identities=16% Similarity=0.230 Sum_probs=99.2
Q ss_pred CCCcEEEechhHHHHH--hccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEE
Q psy17793 63 DSSMGILQNLPSILAG--HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQT 140 (397)
Q Consensus 63 ~~g~~~~Qd~~S~l~~--~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~ 140 (397)
++.|-..-+.++.++. +....-.|..|+|+|||+|..++..+.+ +..+|+|+|+|+++++.+++|++++ ..+|++
T Consensus 21 LEQY~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~l--Ga~~V~~vdiD~~a~ei~r~N~~~l-~g~v~f 97 (198)
T COG2263 21 LEQYRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALL--GASRVLAVDIDPEALEIARANAEEL-LGDVEF 97 (198)
T ss_pred ceecCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhc--CCcEEEEEecCHHHHHHHHHHHHhh-CCceEE
Confidence 3333334444554433 3334557889999999999999755543 6789999999999999999999994 457999
Q ss_pred EEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccc
Q psy17793 141 HVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDW 220 (397)
Q Consensus 141 ~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~ 220 (397)
.++|+..+ ...||.+++|||--.- . +. .+ +.+|..
T Consensus 98 ~~~dv~~~--------------~~~~dtvimNPPFG~~---------~------rh-aD-----r~Fl~~---------- 132 (198)
T COG2263 98 VVADVSDF--------------RGKFDTVIMNPPFGSQ---------R------RH-AD-----RPFLLK---------- 132 (198)
T ss_pred EEcchhhc--------------CCccceEEECCCCccc---------c------cc-CC-----HHHHHH----------
Confidence 99999875 3679999999992110 0 00 11 344444
Q ss_pred cccccccCCcEEEEEecCCCccccHHHHHHHHHHCCC
Q psy17793 221 QGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPE 257 (397)
Q Consensus 221 ~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~ 257 (397)
|++. +.+||| +|..-+++-+.+..+.+++
T Consensus 133 -Ale~----s~vVYs---iH~a~~~~f~~~~~~~~G~ 161 (198)
T COG2263 133 -ALEI----SDVVYS---IHKAGSRDFVEKFAADLGG 161 (198)
T ss_pred -HHHh----hheEEE---eeccccHHHHHHHHHhcCC
Confidence 3332 378895 9999999999999988864
No 77
>PLN02476 O-methyltransferase
Probab=99.24 E-value=6.3e-11 Score=114.60 Aligned_cols=129 Identities=12% Similarity=0.184 Sum_probs=100.0
Q ss_pred EechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEccccc
Q psy17793 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTR 147 (397)
Q Consensus 69 ~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~ 147 (397)
+......+...++......+|||+|++.|..|+++|..+++.++|+++|.++++.+.+++|++++|+. +|+++.+|+..
T Consensus 102 v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e 181 (278)
T PLN02476 102 VSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAE 181 (278)
T ss_pred cCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence 34445566666677777889999999999999999998877889999999999999999999999997 59999999987
Q ss_pred ccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhcccccccccccc
Q psy17793 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLK 227 (397)
Q Consensus 148 ~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLk 227 (397)
.+... ......++||.|++|++ +... ...++. +.++|+
T Consensus 182 ~L~~l-----~~~~~~~~FD~VFIDa~-------------------K~~Y-------~~y~e~-----------~l~lL~ 219 (278)
T PLN02476 182 SLKSM-----IQNGEGSSYDFAFVDAD-------------------KRMY-------QDYFEL-----------LLQLVR 219 (278)
T ss_pred HHHHH-----HhcccCCCCCEEEECCC-------------------HHHH-------HHHHHH-----------HHHhcC
Confidence 64210 00011357999999997 3333 334455 888999
Q ss_pred CCcEEEEEecCC
Q psy17793 228 KDGILVYCTCSL 239 (397)
Q Consensus 228 pgG~lvysTCS~ 239 (397)
+||.|+.-..-+
T Consensus 220 ~GGvIV~DNvL~ 231 (278)
T PLN02476 220 VGGVIVMDNVLW 231 (278)
T ss_pred CCcEEEEecCcc
Confidence 999998865533
No 78
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.23 E-value=3e-10 Score=112.43 Aligned_cols=106 Identities=19% Similarity=0.153 Sum_probs=84.7
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEEcccccccccchhhHHHhhh
Q psy17793 83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL-SSIQTHVYDSTRINTSSQIDIERMKL 161 (397)
Q Consensus 83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~-~~v~~~~~D~~~~~~~~~~d~~~~~~ 161 (397)
+.+|.+|||+|||+|..+..+|. .+.+|+|+|.++++++.++++++..+. .+|+++++|+..+. +
T Consensus 129 ~~~g~~ILDIGCG~G~~s~~La~---~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~-----------~ 194 (322)
T PLN02396 129 PFEGLKFIDIGCGGGLLSEPLAR---MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLA-----------D 194 (322)
T ss_pred CCCCCEEEEeeCCCCHHHHHHHH---cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhh-----------h
Confidence 45678999999999999998886 356899999999999999988776554 46899999886652 3
Q ss_pred cccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793 162 QKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT 236 (397)
Q Consensus 162 ~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT 236 (397)
..++||+|++ ...+.++.+. ..+|++ ..++|||||.++++|
T Consensus 195 ~~~~FD~Vi~----------------------~~vLeHv~d~-~~~L~~-----------l~r~LkPGG~liist 235 (322)
T PLN02396 195 EGRKFDAVLS----------------------LEVIEHVANP-AEFCKS-----------LSALTIPNGATVLST 235 (322)
T ss_pred ccCCCCEEEE----------------------hhHHHhcCCH-HHHHHH-----------HHHHcCCCcEEEEEE
Confidence 4568999997 3445544444 567888 889999999999985
No 79
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.22 E-value=9.8e-11 Score=108.05 Aligned_cols=115 Identities=19% Similarity=0.127 Sum_probs=86.6
Q ss_pred HHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccch
Q psy17793 74 SILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQ 153 (397)
Q Consensus 74 S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~ 153 (397)
+..+...+...++.+|||+|||+|..+.++|+. +.+|+|+|+|+.+++.++++++..++.++++...|+....
T Consensus 19 ~~~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~---- 91 (197)
T PRK11207 19 HSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLT---- 91 (197)
T ss_pred hHHHHHhcccCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCC----
Confidence 344455666677889999999999999999984 4689999999999999999999999888898888886542
Q ss_pred hhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEE
Q psy17793 154 IDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILV 233 (397)
Q Consensus 154 ~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lv 233 (397)
+ .+.||.|++.-. ..... .. ....++++ +.++|||||.++
T Consensus 92 -------~-~~~fD~I~~~~~----------~~~~~----~~-------~~~~~l~~-----------i~~~LkpgG~~~ 131 (197)
T PRK11207 92 -------F-DGEYDFILSTVV----------LMFLE----AK-------TIPGLIAN-----------MQRCTKPGGYNL 131 (197)
T ss_pred -------c-CCCcCEEEEecc----------hhhCC----HH-------HHHHHHHH-----------HHHHcCCCcEEE
Confidence 2 357999997221 00001 11 12567777 899999999976
Q ss_pred EE
Q psy17793 234 YC 235 (397)
Q Consensus 234 ys 235 (397)
+.
T Consensus 132 ~~ 133 (197)
T PRK11207 132 IV 133 (197)
T ss_pred EE
Confidence 54
No 80
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.22 E-value=2e-10 Score=109.92 Aligned_cols=108 Identities=21% Similarity=0.223 Sum_probs=84.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccchhhHHHhhhc
Q psy17793 84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQIDIERMKLQ 162 (397)
Q Consensus 84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~~d~~~~~~~ 162 (397)
.++.+|||+|||+|..+..++.. +.+|+++|+|+.+++.++++++..|+. +++++++|+..+. .+.
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~----------~~~ 109 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIA----------QHL 109 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHh----------hhc
Confidence 45679999999999999999884 468999999999999999999999874 6899999987652 134
Q ss_pred ccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793 163 KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS 238 (397)
Q Consensus 163 ~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS 238 (397)
.++||+|++.. .+..+.+. ..+|++ +.++|||||+++.....
T Consensus 110 ~~~fD~V~~~~----------------------vl~~~~~~-~~~l~~-----------~~~~LkpgG~l~i~~~n 151 (255)
T PRK11036 110 ETPVDLILFHA----------------------VLEWVADP-KSVLQT-----------LWSVLRPGGALSLMFYN 151 (255)
T ss_pred CCCCCEEEehh----------------------HHHhhCCH-HHHHHH-----------HHHHcCCCeEEEEEEEC
Confidence 56899999732 22222222 467778 99999999999876433
No 81
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.22 E-value=1.6e-10 Score=116.36 Aligned_cols=120 Identities=19% Similarity=0.298 Sum_probs=96.2
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhh
Q psy17793 81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMK 160 (397)
Q Consensus 81 L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~ 160 (397)
+....+..+||+|||+|..++++|... +...++|+|+++.+++.+.+++.+.|++||.++.+|+..+.. .
T Consensus 118 ~~~~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~---------~ 187 (390)
T PRK14121 118 ISKNQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLE---------L 187 (390)
T ss_pred hcCCCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhh---------h
Confidence 344567799999999999999999985 567999999999999999999999999999999999976531 2
Q ss_pred hcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793 161 LQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS 238 (397)
Q Consensus 161 ~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS 238 (397)
+..++||.|++.-|+ |+. .. .. +++ .+..+|+. +.++|++||.+.+.|.+
T Consensus 188 ~~~~s~D~I~lnFPd------PW~---Kk-----rH-RRl--v~~~fL~e-----------~~RvLkpGG~l~l~TD~ 237 (390)
T PRK14121 188 LPSNSVEKIFVHFPV------PWD---KK-----PH-RRV--ISEDFLNE-----------ALRVLKPGGTLELRTDS 237 (390)
T ss_pred CCCCceeEEEEeCCC------Ccc---cc-----ch-hhc--cHHHHHHH-----------HHHHcCCCcEEEEEEEC
Confidence 456789999998763 221 11 11 222 24778888 99999999999999876
No 82
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.22 E-value=2.4e-10 Score=111.62 Aligned_cols=134 Identities=16% Similarity=0.159 Sum_probs=93.5
Q ss_pred hhHHHHHhccC--CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccc
Q psy17793 72 LPSILAGHYLD--VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRI 148 (397)
Q Consensus 72 ~~S~l~~~~L~--~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~ 148 (397)
++..+...++. ..+|++|||+|||+|..+..++.+ +..+|+|+|+|+.+++.+++|++.+++.+ +.+...|...
T Consensus 144 ~tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~--g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~- 220 (288)
T TIGR00406 144 PTTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKL--GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ- 220 (288)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc-
Confidence 44445444443 457899999999999999877653 45699999999999999999999998864 5555555322
Q ss_pred cccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccC
Q psy17793 149 NTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKK 228 (397)
Q Consensus 149 ~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkp 228 (397)
...++||+|++|.. ...+ .+++.+ +.++|||
T Consensus 221 ------------~~~~~fDlVvan~~-------------------~~~l-------~~ll~~-----------~~~~Lkp 251 (288)
T TIGR00406 221 ------------PIEGKADVIVANIL-------------------AEVI-------KELYPQ-----------FSRLVKP 251 (288)
T ss_pred ------------ccCCCceEEEEecC-------------------HHHH-------HHHHHH-----------HHHHcCC
Confidence 13468999998653 1221 356666 8899999
Q ss_pred CcEEEEEecCCCccccHHHHHHHHHHCCCcEEEe
Q psy17793 229 DGILVYCTCSLSVEENEAVIAWILHRHPEVELVQ 262 (397)
Q Consensus 229 gG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~ 262 (397)
||+++.|. +..++ .+.+...++++ ++++.
T Consensus 252 gG~li~sg--i~~~~-~~~v~~~~~~~--f~~~~ 280 (288)
T TIGR00406 252 GGWLILSG--ILETQ-AQSVCDAYEQG--FTVVE 280 (288)
T ss_pred CcEEEEEe--CcHhH-HHHHHHHHHcc--Cceee
Confidence 99999984 33333 33445555553 55554
No 83
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.21 E-value=3.4e-11 Score=110.01 Aligned_cols=82 Identities=23% Similarity=0.370 Sum_probs=62.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccchhhHHHhhhcc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQK 163 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~~~ 163 (397)
+|.+|||+|||+|..++..+++ +..+|+.||.|+..++.+++|++.+++.+ +++++.|+...... .....
T Consensus 42 ~g~~vLDLFaGSGalGlEALSR--GA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~-------~~~~~ 112 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSR--GAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLK-------LAKKG 112 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHH-------HHHCT
T ss_pred CCCeEEEcCCccCccHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHh-------hcccC
Confidence 6889999999999999988774 67799999999999999999999999986 99999998765421 11235
Q ss_pred cCccEEEEcCCC
Q psy17793 164 ESFDRILLDAPC 175 (397)
Q Consensus 164 ~~fD~Il~DpPC 175 (397)
..||+|++|||+
T Consensus 113 ~~fDiIflDPPY 124 (183)
T PF03602_consen 113 EKFDIIFLDPPY 124 (183)
T ss_dssp S-EEEEEE--ST
T ss_pred CCceEEEECCCc
Confidence 789999999995
No 84
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.21 E-value=1.7e-10 Score=110.08 Aligned_cols=108 Identities=20% Similarity=0.270 Sum_probs=84.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccchhhHHHhhh
Q psy17793 84 QPGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQIDIERMKL 161 (397)
Q Consensus 84 ~~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~~d~~~~~~ 161 (397)
.++.+|||+|||+|..+..++..+ .+.++|+|+|.|+.+++.+++++++++.. +++++++|+....
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~------------ 122 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA------------ 122 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC------------
Confidence 567899999999999998888754 35689999999999999999999998875 5999999987652
Q ss_pred cccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHH-HHHHHHHHHHhhhhccccccccccccCCcEEEEEec
Q psy17793 162 QKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYA-NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC 237 (397)
Q Consensus 162 ~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~-~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTC 237 (397)
...+|.|++.- .+..+. .....++++ +.+.|||||.++.+.-
T Consensus 123 -~~~~D~vv~~~----------------------~l~~l~~~~~~~~l~~-----------i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 123 -IENASMVVLNF----------------------TLQFLEPSERQALLDK-----------IYQGLNPGGALVLSEK 165 (247)
T ss_pred -CCCCCEEehhh----------------------HHHhCCHHHHHHHHHH-----------HHHhcCCCCEEEEEEe
Confidence 23589988621 111111 122577888 9999999999999863
No 85
>PLN02672 methionine S-methyltransferase
Probab=99.20 E-value=2.7e-10 Score=127.03 Aligned_cols=173 Identities=15% Similarity=0.122 Sum_probs=114.5
Q ss_pred cCCCcEEEechhHHHHHhccCCC-----CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-
Q psy17793 62 LDSSMGILQNLPSILAGHYLDVQ-----PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL- 135 (397)
Q Consensus 62 ~~~g~~~~Qd~~S~l~~~~L~~~-----~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~- 135 (397)
+..|.++..+.+-.++-. |... ++.+|||+|||+|..++.++... +..+|+|+|+|+.+++.+++|++++++
T Consensus 91 V~p~VLIPRpeTE~lve~-L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~~A~~Na~~n~l~ 168 (1082)
T PLN02672 91 EIPSIFIPEDWSFTFYEG-LNRHPDSIFRDKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVKVAWINLYLNALD 168 (1082)
T ss_pred eCCCcccCchhHHHHHHH-HHhcccccCCCCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCcc
Confidence 445555555555445433 5432 24689999999999999999875 346999999999999999999998754
Q ss_pred ---------------CcEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCC----Cccccccc--------
Q psy17793 136 ---------------SSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQ----RPMFYNAN-------- 188 (397)
Q Consensus 136 ---------------~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~----~p~~~~~~-------- 188 (397)
.+|+++++|....... ...+||+|+.|||+-..+. .++.....
T Consensus 169 ~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~----------~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~ 238 (1082)
T PLN02672 169 DDGLPVYDGEGKTLLDRVEFYESDLLGYCRD----------NNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSL 238 (1082)
T ss_pred cccccccccccccccccEEEEECchhhhccc----------cCCceEEEEECCCcCCCcchhhcChhhhhcccccccccc
Confidence 3589999998754210 1136999999999987762 23322110
Q ss_pred -CccchHH---HHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCccccHHHHHHHHHHCCCcEEEe
Q psy17793 189 -SFLNLDK---KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQ 262 (397)
Q Consensus 189 -s~~~~~~---~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~ 262 (397)
....+.. +-..+.-. ++++.. +.++|||||.+++- +.....+++.+.++++. +++...
T Consensus 239 ~p~~AL~g~~~g~dGL~~y-r~i~~~-----------a~~~L~pgG~l~lE---iG~~q~~~v~~~l~~~~-gf~~~~ 300 (1082)
T PLN02672 239 SNYCALQGFVEDQFGLGLI-ARAVEE-----------GISVIKPMGIMIFN---MGGRPGQAVCERLFERR-GFRITK 300 (1082)
T ss_pred CccccccCCCCCCcHHHHH-HHHHHH-----------HHHhccCCCEEEEE---ECccHHHHHHHHHHHHC-CCCeeE
Confidence 0011100 01222222 788898 99999999999875 55555555554677765 354443
No 86
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.19 E-value=4.2e-11 Score=112.13 Aligned_cols=105 Identities=20% Similarity=0.245 Sum_probs=86.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793 84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK 163 (397)
Q Consensus 84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~ 163 (397)
.+|.+|||+|||-|..+..+|.+ +..|+|+|++++.++.++..+.+.|+. |......+.++. ...
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv~-i~y~~~~~edl~-----------~~~ 122 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGVN-IDYRQATVEDLA-----------SAG 122 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhcccc-ccchhhhHHHHH-----------hcC
Confidence 46889999999999999999985 489999999999999999999998875 445444444432 233
Q ss_pred cCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEec
Q psy17793 164 ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC 237 (397)
Q Consensus 164 ~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTC 237 (397)
++||+|+| -+.+++++.. ..++++ +.+++||||.++.||=
T Consensus 123 ~~FDvV~c----------------------mEVlEHv~dp-~~~~~~-----------c~~lvkP~G~lf~STi 162 (243)
T COG2227 123 GQFDVVTC----------------------MEVLEHVPDP-ESFLRA-----------CAKLVKPGGILFLSTI 162 (243)
T ss_pred CCccEEEE----------------------hhHHHccCCH-HHHHHH-----------HHHHcCCCcEEEEecc
Confidence 79999998 4888888777 568999 9999999999999953
No 87
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.19 E-value=2.2e-10 Score=106.82 Aligned_cols=114 Identities=20% Similarity=0.180 Sum_probs=78.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhc
Q psy17793 83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ 162 (397)
Q Consensus 83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~ 162 (397)
.++|.+|||+|||||..+..+++..+..+.|+|+|+++. ..+.+++++++|+...... +.-..++.
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~~v~~i~~D~~~~~~~---~~i~~~~~ 114 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIVGVDFLQGDFRDELVL---KALLERVG 114 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCCCcEEEecCCCChHHH---HHHHHHhC
Confidence 367889999999999999999998877789999999981 2345789999998764200 00001234
Q ss_pred ccCccEEEEcC-C-CCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793 163 KESFDRILLDA-P-CSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC 235 (397)
Q Consensus 163 ~~~fD~Il~Dp-P-CSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys 235 (397)
.++||.|++|+ | ++|. . ..+......+...+|+. +.++|||||.++..
T Consensus 115 ~~~~D~V~S~~~~~~~g~---------~-----~~d~~~~~~~~~~~L~~-----------~~~~LkpGG~~vi~ 164 (209)
T PRK11188 115 DSKVQVVMSDMAPNMSGT---------P-----AVDIPRAMYLVELALDM-----------CRDVLAPGGSFVVK 164 (209)
T ss_pred CCCCCEEecCCCCccCCC---------h-----HHHHHHHHHHHHHHHHH-----------HHHHcCCCCEEEEE
Confidence 57899999986 3 1110 0 01111111123567777 99999999999986
No 88
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=99.18 E-value=1.4e-10 Score=116.32 Aligned_cols=98 Identities=21% Similarity=0.326 Sum_probs=63.1
Q ss_pred HHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccch--h
Q psy17793 77 AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQ--I 154 (397)
Q Consensus 77 ~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~--~ 154 (397)
+..+++..++ +|||++||.|++|+.+|.. ..+|+|+|+++.+++.+++|++.+|++|++++.+++.++..... .
T Consensus 189 ~~~~l~~~~~-~vlDlycG~G~fsl~la~~---~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r 264 (352)
T PF05958_consen 189 ALEWLDLSKG-DVLDLYCGVGTFSLPLAKK---AKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAR 264 (352)
T ss_dssp HHHHCTT-TT-EEEEES-TTTCCHHHHHCC---SSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-
T ss_pred HHHHhhcCCC-cEEEEeecCCHHHHHHHhh---CCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhH
Confidence 4455666665 8999999999999999884 46899999999999999999999999999999988765421100 0
Q ss_pred hH---HHhhhcccCccEEEEcCCCCCC
Q psy17793 155 DI---ERMKLQKESFDRILLDAPCSGF 178 (397)
Q Consensus 155 d~---~~~~~~~~~fD~Il~DpPCSg~ 178 (397)
+. .........+|.|++|||-+|.
T Consensus 265 ~~~~~~~~~~~~~~~d~vilDPPR~G~ 291 (352)
T PF05958_consen 265 EFNRLKGIDLKSFKFDAVILDPPRAGL 291 (352)
T ss_dssp GGTTGGGS-GGCTTESEEEE---TT-S
T ss_pred HHHhhhhhhhhhcCCCEEEEcCCCCCc
Confidence 00 0000112368999999997774
No 89
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.18 E-value=2e-10 Score=116.21 Aligned_cols=84 Identities=18% Similarity=0.254 Sum_probs=69.5
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhh
Q psy17793 81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMK 160 (397)
Q Consensus 81 L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~ 160 (397)
++..++.+|||+|||+|..++.+|.. ..+|+|+|+|+.+++.+++|++.++++++++.++|+..+...
T Consensus 229 l~~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~--------- 296 (374)
T TIGR02085 229 VREIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATA--------- 296 (374)
T ss_pred HHhcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHh---------
Confidence 33346789999999999999988863 468999999999999999999999998999999999765310
Q ss_pred hcccCccEEEEcCCCCC
Q psy17793 161 LQKESFDRILLDAPCSG 177 (397)
Q Consensus 161 ~~~~~fD~Il~DpPCSg 177 (397)
....||+|++|||..|
T Consensus 297 -~~~~~D~vi~DPPr~G 312 (374)
T TIGR02085 297 -QMSAPELVLVNPPRRG 312 (374)
T ss_pred -cCCCCCEEEECCCCCC
Confidence 1245999999999543
No 90
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.17 E-value=5.2e-10 Score=101.87 Aligned_cols=118 Identities=23% Similarity=0.302 Sum_probs=82.0
Q ss_pred HHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCc--------EEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcc
Q psy17793 74 SILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTG--------TLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYD 144 (397)
Q Consensus 74 S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~--------~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D 144 (397)
+..+..+.++++|+.|||-+||+|+..+..|....+.. .++|+|+++++++.+++|++.+|+.. |.+...|
T Consensus 17 A~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D 96 (179)
T PF01170_consen 17 AAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWD 96 (179)
T ss_dssp HHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--
T ss_pred HHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecc
Confidence 44455666788999999999999999988877654433 49999999999999999999999875 8899999
Q ss_pred cccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccc
Q psy17793 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIP 224 (397)
Q Consensus 145 ~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~ 224 (397)
++.+. +..+++|.|++|||+ |.+ ...-.....+-.+++++ +.+
T Consensus 97 ~~~l~-----------~~~~~~d~IvtnPPy---G~r------------~~~~~~~~~ly~~~~~~-----------~~~ 139 (179)
T PF01170_consen 97 ARELP-----------LPDGSVDAIVTNPPY---GRR------------LGSKKDLEKLYRQFLRE-----------LKR 139 (179)
T ss_dssp GGGGG-----------GTTSBSCEEEEE--S---TTS------------HCHHHHHHHHHHHHHHH-----------HHC
T ss_pred hhhcc-----------cccCCCCEEEECcch---hhh------------ccCHHHHHHHHHHHHHH-----------HHH
Confidence 98873 345689999999994 211 11222234444778888 888
Q ss_pred cccC
Q psy17793 225 LLKK 228 (397)
Q Consensus 225 lLkp 228 (397)
.|++
T Consensus 140 ~l~~ 143 (179)
T PF01170_consen 140 VLKP 143 (179)
T ss_dssp HSTT
T ss_pred HCCC
Confidence 8998
No 91
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.16 E-value=3.8e-11 Score=95.62 Aligned_cols=95 Identities=18% Similarity=0.247 Sum_probs=72.4
Q ss_pred EEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccCccEE
Q psy17793 90 LDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRI 169 (397)
Q Consensus 90 LDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~I 169 (397)
||+|||+|..+..+++. +...|+++|+++.+++.++++....+ +.+...|+..+. +++++||.|
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~---~~~~~~d~~~l~-----------~~~~sfD~v 64 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEG---VSFRQGDAEDLP-----------FPDNSFDVV 64 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTST---EEEEESBTTSSS-----------S-TT-EEEE
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccC---chheeehHHhCc-----------ccccccccc
Confidence 89999999999999996 57899999999999999998876544 558889988763 567899999
Q ss_pred EEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEE
Q psy17793 170 LLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVY 234 (397)
Q Consensus 170 l~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvy 234 (397)
++. ..+..+ +.+.+++++ +.++|||||++++
T Consensus 65 ~~~----------------------~~~~~~-~~~~~~l~e-----------~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 65 FSN----------------------SVLHHL-EDPEAALRE-----------IYRVLKPGGRLVI 95 (95)
T ss_dssp EEE----------------------SHGGGS-SHHHHHHHH-----------HHHHEEEEEEEEE
T ss_pred ccc----------------------cceeec-cCHHHHHHH-----------HHHHcCcCeEEeC
Confidence 971 112222 233778888 9999999999974
No 92
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=99.16 E-value=5.4e-10 Score=109.14 Aligned_cols=93 Identities=18% Similarity=0.204 Sum_probs=76.2
Q ss_pred HhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHH
Q psy17793 78 GHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIE 157 (397)
Q Consensus 78 ~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~ 157 (397)
...|.+++|+.+||++||.|+.|..++..+++.++|+|+|.|+.+++.++++++. .++++++..|+.++...
T Consensus 12 l~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~------ 83 (296)
T PRK00050 12 VDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEV------ 83 (296)
T ss_pred HHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHH------
Confidence 3456678999999999999999999999876678999999999999999998876 46799999999876311
Q ss_pred HhhhcccCccEEEEcCCCCCCC
Q psy17793 158 RMKLQKESFDRILLDAPCSGFG 179 (397)
Q Consensus 158 ~~~~~~~~fD~Il~DpPCSg~G 179 (397)
......+||.|++|.=+|+.-
T Consensus 84 -l~~~~~~vDgIl~DLGvSs~Q 104 (296)
T PRK00050 84 -LAEGLGKVDGILLDLGVSSPQ 104 (296)
T ss_pred -HHcCCCccCEEEECCCccccc
Confidence 000112799999999999863
No 93
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.16 E-value=3.8e-10 Score=111.66 Aligned_cols=86 Identities=12% Similarity=0.258 Sum_probs=72.7
Q ss_pred HHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH
Q psy17793 77 AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI 156 (397)
Q Consensus 77 ~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~ 156 (397)
....++++++++|||+|||+|..+..+|...+..+.|+++|+++.+++.++++++++|++++.++.+|+.....
T Consensus 72 ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~------ 145 (322)
T PRK13943 72 FMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVP------ 145 (322)
T ss_pred HHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccc------
Confidence 33456688999999999999999999999876567899999999999999999999999999999999865421
Q ss_pred HHhhhcccCccEEEEcC
Q psy17793 157 ERMKLQKESFDRILLDA 173 (397)
Q Consensus 157 ~~~~~~~~~fD~Il~Dp 173 (397)
....||+|+++.
T Consensus 146 -----~~~~fD~Ii~~~ 157 (322)
T PRK13943 146 -----EFAPYDVIFVTV 157 (322)
T ss_pred -----ccCCccEEEECC
Confidence 225699999864
No 94
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.15 E-value=2.6e-10 Score=114.90 Aligned_cols=88 Identities=20% Similarity=0.321 Sum_probs=67.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHh---h--
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERM---K-- 160 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~---~-- 160 (397)
+.+|||+|||+|..++.++.. ..+|+|+|+++.+++.+++|++.+|++|++++.+|+.++..... ..... .
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~---~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~-~~~~~~~~~~~ 282 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARN---FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMN-GVREFNRLKGI 282 (362)
T ss_pred CCeEEEEeccccHHHHHHHhh---CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHh-hcccccccccc
Confidence 357999999999999988874 35899999999999999999999999999999999977531100 00000 0
Q ss_pred -hcccCccEEEEcCCCCC
Q psy17793 161 -LQKESFDRILLDAPCSG 177 (397)
Q Consensus 161 -~~~~~fD~Il~DpPCSg 177 (397)
....+||+|++|||.+|
T Consensus 283 ~~~~~~~D~v~lDPPR~G 300 (362)
T PRK05031 283 DLKSYNFSTIFVDPPRAG 300 (362)
T ss_pred cccCCCCCEEEECCCCCC
Confidence 00125899999999654
No 95
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.15 E-value=1e-10 Score=113.36 Aligned_cols=123 Identities=23% Similarity=0.267 Sum_probs=85.3
Q ss_pred echhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccc
Q psy17793 70 QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRI 148 (397)
Q Consensus 70 Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~ 148 (397)
|...-..+...+++++|++|||+|||.|+.+.++|+.. +.+|+++.+|+...+.+++++++.|+.+ +++...|.+++
T Consensus 47 Q~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~ 124 (273)
T PF02353_consen 47 QERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL 124 (273)
T ss_dssp HHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc
Confidence 33334456777889999999999999999999999975 5799999999999999999999999875 99999998765
Q ss_pred cccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccC
Q psy17793 149 NTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKK 228 (397)
Q Consensus 149 ~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkp 228 (397)
. .+||+|+. -++..+.. . +.+ ..+++. +.++|||
T Consensus 125 ~--------------~~fD~IvS----------i~~~Ehvg----~---~~~----~~~f~~-----------~~~~Lkp 158 (273)
T PF02353_consen 125 P--------------GKFDRIVS----------IEMFEHVG----R---KNY----PAFFRK-----------ISRLLKP 158 (273)
T ss_dssp ----------------S-SEEEE----------ESEGGGTC----G---GGH----HHHHHH-----------HHHHSET
T ss_pred C--------------CCCCEEEE----------EechhhcC----h---hHH----HHHHHH-----------HHHhcCC
Confidence 2 38999986 01111111 0 112 456677 8999999
Q ss_pred CcEEEEEecCCC
Q psy17793 229 DGILVYCTCSLS 240 (397)
Q Consensus 229 gG~lvysTCS~~ 240 (397)
||+++..+.+..
T Consensus 159 gG~~~lq~i~~~ 170 (273)
T PF02353_consen 159 GGRLVLQTITHR 170 (273)
T ss_dssp TEEEEEEEEEE-
T ss_pred CcEEEEEecccc
Confidence 999988766543
No 96
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.15 E-value=3.9e-10 Score=108.72 Aligned_cols=115 Identities=19% Similarity=0.201 Sum_probs=87.1
Q ss_pred HHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchh
Q psy17793 75 ILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQI 154 (397)
Q Consensus 75 ~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~ 154 (397)
.-+...+.+.++.+|||+|||+|..+..++... +.+|+++|+|+.+++.++++... ..++.+...|+....
T Consensus 42 ~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~~~~~----- 112 (263)
T PTZ00098 42 TKILSDIELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD--KNKIEFEANDILKKD----- 112 (263)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc--CCceEEEECCcccCC-----
Confidence 334456788899999999999999999888753 46999999999999999987654 246889999987542
Q ss_pred hHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHH-HHHHHHHHHHhhhhccccccccccccCCcEEE
Q psy17793 155 DIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYA-NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILV 233 (397)
Q Consensus 155 d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~-~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lv 233 (397)
++.++||+|++- ..+..+. .-..++|++ +.++|||||+++
T Consensus 113 ------~~~~~FD~V~s~----------------------~~l~h~~~~d~~~~l~~-----------i~r~LkPGG~lv 153 (263)
T PTZ00098 113 ------FPENTFDMIYSR----------------------DAILHLSYADKKKLFEK-----------CYKWLKPNGILL 153 (263)
T ss_pred ------CCCCCeEEEEEh----------------------hhHHhCCHHHHHHHHHH-----------HHHHcCCCcEEE
Confidence 455789999971 1121211 122677888 999999999999
Q ss_pred EEec
Q psy17793 234 YCTC 237 (397)
Q Consensus 234 ysTC 237 (397)
.+.-
T Consensus 154 i~d~ 157 (263)
T PTZ00098 154 ITDY 157 (263)
T ss_pred EEEe
Confidence 8743
No 97
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.15 E-value=4.1e-10 Score=108.60 Aligned_cols=116 Identities=20% Similarity=0.233 Sum_probs=93.3
Q ss_pred HHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccc
Q psy17793 74 SILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSS 152 (397)
Q Consensus 74 S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~ 152 (397)
-..+...|.++||++|||+|||-|+.+.++|+.. +.+|+|+++|++..+.++++++..|++ +|++...|...+.
T Consensus 61 ~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~--- 135 (283)
T COG2230 61 LDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE--- 135 (283)
T ss_pred HHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---
Confidence 3456677889999999999999999999999975 589999999999999999999999998 7999999987752
Q ss_pred hhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHH-HHHHHHHHHhhhhccccccccccccCCcE
Q psy17793 153 QIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYAN-IQKKLLQAVYRFVSLFDWQGIPLLKKDGI 231 (397)
Q Consensus 153 ~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~-~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~ 231 (397)
+.||+|+. -...+.+.. .-...++. +.++|+|||+
T Consensus 136 -----------e~fDrIvS----------------------vgmfEhvg~~~~~~ff~~-----------~~~~L~~~G~ 171 (283)
T COG2230 136 -----------EPFDRIVS----------------------VGMFEHVGKENYDDFFKK-----------VYALLKPGGR 171 (283)
T ss_pred -----------cccceeee----------------------hhhHHHhCcccHHHHHHH-----------HHhhcCCCce
Confidence 45999985 122222221 01456666 9999999999
Q ss_pred EEEEecC
Q psy17793 232 LVYCTCS 238 (397)
Q Consensus 232 lvysTCS 238 (397)
++.-|-+
T Consensus 172 ~llh~I~ 178 (283)
T COG2230 172 MLLHSIT 178 (283)
T ss_pred EEEEEec
Confidence 9888544
No 98
>PRK08317 hypothetical protein; Provisional
Probab=99.14 E-value=6.3e-10 Score=103.72 Aligned_cols=115 Identities=22% Similarity=0.328 Sum_probs=87.1
Q ss_pred HhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHH
Q psy17793 78 GHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIE 157 (397)
Q Consensus 78 ~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~ 157 (397)
...+.+.++.+|||+|||+|..+..++..+++.++++++|.++.+++.++++... ...++.+...|+....
T Consensus 12 ~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~d~~~~~-------- 82 (241)
T PRK08317 12 FELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-LGPNVEFVRGDADGLP-------- 82 (241)
T ss_pred HHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC-CCCceEEEecccccCC--------
Confidence 3456778899999999999999999999875567999999999999999888332 3356888888886542
Q ss_pred HhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEec
Q psy17793 158 RMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC 237 (397)
Q Consensus 158 ~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTC 237 (397)
+..+.||.|+++-- +..+.. ...++++ +.++|||||.+++..+
T Consensus 83 ---~~~~~~D~v~~~~~----------------------~~~~~~-~~~~l~~-----------~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 83 ---FPDGSFDAVRSDRV----------------------LQHLED-PARALAE-----------IARVLRPGGRVVVLDT 125 (241)
T ss_pred ---CCCCCceEEEEech----------------------hhccCC-HHHHHHH-----------HHHHhcCCcEEEEEec
Confidence 34568999997321 111111 1556777 8899999999998876
Q ss_pred C
Q psy17793 238 S 238 (397)
Q Consensus 238 S 238 (397)
.
T Consensus 126 ~ 126 (241)
T PRK08317 126 D 126 (241)
T ss_pred C
Confidence 4
No 99
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.14 E-value=1.3e-10 Score=107.42 Aligned_cols=79 Identities=29% Similarity=0.399 Sum_probs=60.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccchhhHHHhhh
Q psy17793 83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKL 161 (397)
Q Consensus 83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~ 161 (397)
.++|+.|+||+||-|.+++.+|.. .....|+|+|++|.+++.+++|++.+++++ |.++++|++.+.
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~-~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~------------ 165 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKH-GKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL------------ 165 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHH-T-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG--------------
T ss_pred CCcceEEEEccCCccHHHHHHhhh-cCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc------------
Confidence 578999999999999999999885 356789999999999999999999999986 889999998874
Q ss_pred cccCccEEEEcCC
Q psy17793 162 QKESFDRILLDAP 174 (397)
Q Consensus 162 ~~~~fD~Il~DpP 174 (397)
....||+|+++.|
T Consensus 166 ~~~~~drvim~lp 178 (200)
T PF02475_consen 166 PEGKFDRVIMNLP 178 (200)
T ss_dssp -TT-EEEEEE--T
T ss_pred CccccCEEEECCh
Confidence 2468999999988
No 100
>PHA03411 putative methyltransferase; Provisional
Probab=99.12 E-value=1.6e-09 Score=104.25 Aligned_cols=146 Identities=12% Similarity=0.120 Sum_probs=96.3
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhh
Q psy17793 81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMK 160 (397)
Q Consensus 81 L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~ 160 (397)
+.+..+.+|||+|||+|..+..++... +..+|+++|+|+.+++.+++++ .+++++++|+..+.
T Consensus 60 ~~~~~~grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~~----------- 122 (279)
T PHA03411 60 IDAHCTGKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEFE----------- 122 (279)
T ss_pred hccccCCeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhhc-----------
Confidence 445566799999999999998887764 2468999999999999998763 46788999987652
Q ss_pred hcccCccEEEEcCCCCCCCCC---cccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEE--EEE
Q psy17793 161 LQKESFDRILLDAPCSGFGQR---PMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGIL--VYC 235 (397)
Q Consensus 161 ~~~~~fD~Il~DpPCSg~G~~---p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~l--vys 235 (397)
...+||.|++|||....... ....++-. ....+.+ .+ .+++.. +..+|+|+|.+ +|+
T Consensus 123 -~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG----~~g~~~l-~~-~~~l~~-----------v~~~L~p~G~~~~~ys 184 (279)
T PHA03411 123 -SNEKFDVVISNPPFGKINTTDTKDVFEYTGG----EFEFKVM-TL-GQKFAD-----------VGYFIVPTGSAGFAYS 184 (279)
T ss_pred -ccCCCcEEEEcCCccccCchhhhhhhhhccC----ccccccc-cH-HHHHhh-----------hHheecCCceEEEEEe
Confidence 23579999999997553310 00000000 0000000 01 355565 78899999965 455
Q ss_pred ecCC-CccccHHHHHHHHHHCCCcEEEe
Q psy17793 236 TCSL-SVEENEAVIAWILHRHPEVELVQ 262 (397)
Q Consensus 236 TCS~-~~eEnE~vV~~~L~~~~~~~l~~ 262 (397)
+-.+ |.--..+....+|+.+ ++.+.+
T Consensus 185 s~~~y~~sl~~~~y~~~l~~~-g~~~~~ 211 (279)
T PHA03411 185 GRPYYDGTMKSNKYLKWSKQT-GLVTYA 211 (279)
T ss_pred ccccccccCCHHHHHHHHHhc-CcEecC
Confidence 4322 4444566777888888 576654
No 101
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.12 E-value=5.4e-10 Score=101.60 Aligned_cols=82 Identities=26% Similarity=0.370 Sum_probs=67.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccchhhHHHhhhc
Q psy17793 84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQIDIERMKLQ 162 (397)
Q Consensus 84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~~d~~~~~~~ 162 (397)
-.|.++||++||+|+.++..+++ +..+++.+|.|...+..+++|++.+++. +.+++..|+..++.. . -.
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSR--GA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~-------~-~~ 111 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSR--GAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQ-------L-GT 111 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhC--CCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHh-------c-CC
Confidence 46889999999999999988885 6789999999999999999999999964 588999998855321 0 01
Q ss_pred ccCccEEEEcCCC
Q psy17793 163 KESFDRILLDAPC 175 (397)
Q Consensus 163 ~~~fD~Il~DpPC 175 (397)
.+.||+|++|||+
T Consensus 112 ~~~FDlVflDPPy 124 (187)
T COG0742 112 REPFDLVFLDPPY 124 (187)
T ss_pred CCcccEEEeCCCC
Confidence 1249999999994
No 102
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.12 E-value=1.5e-09 Score=103.72 Aligned_cols=119 Identities=19% Similarity=0.162 Sum_probs=83.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccchhhHHHhhh
Q psy17793 83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQIDIERMKL 161 (397)
Q Consensus 83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~~d~~~~~~ 161 (397)
..++.+|||+|||+|..+..++.. +..+|+|+|+|+.+++.+++|++++++. .+.+..+
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~--g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~------------------ 176 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKL--GAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQG------------------ 176 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccC------------------
Confidence 467899999999999888766553 3457999999999999999999999873 2322111
Q ss_pred cccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCc
Q psy17793 162 QKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSV 241 (397)
Q Consensus 162 ~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~ 241 (397)
..+||+|++|.. ...+ ..++.. +.++|||||+++++.. ..
T Consensus 177 -~~~fD~Vvani~-------------------~~~~-------~~l~~~-----------~~~~LkpgG~lilsgi--~~ 216 (250)
T PRK00517 177 -DLKADVIVANIL-------------------ANPL-------LELAPD-----------LARLLKPGGRLILSGI--LE 216 (250)
T ss_pred -CCCcCEEEEcCc-------------------HHHH-------HHHHHH-----------HHHhcCCCcEEEEEEC--cH
Confidence 126999998542 1212 445666 8899999999999843 33
Q ss_pred cccHHHHHHHHHHCCCcEEEec
Q psy17793 242 EENEAVIAWILHRHPEVELVQT 263 (397)
Q Consensus 242 eEnE~vV~~~L~~~~~~~l~~~ 263 (397)
+..+-+...++++ +++++..
T Consensus 217 -~~~~~v~~~l~~~-Gf~~~~~ 236 (250)
T PRK00517 217 -EQADEVLEAYEEA-GFTLDEV 236 (250)
T ss_pred -hhHHHHHHHHHHC-CCEEEEE
Confidence 3444555666666 5666543
No 103
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.12 E-value=5.3e-10 Score=104.42 Aligned_cols=124 Identities=20% Similarity=0.340 Sum_probs=100.8
Q ss_pred chhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEE-cccccc
Q psy17793 71 NLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHV-YDSTRI 148 (397)
Q Consensus 71 d~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~-~D~~~~ 148 (397)
...-.++..++......+||++|++.|.-|+.+|..+...++++++|+++++.+.+++|+++.|+.+ |+++. +|+...
T Consensus 45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~ 124 (219)
T COG4122 45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV 124 (219)
T ss_pred hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH
Confidence 5666777778888888999999999999999999998768899999999999999999999999987 77887 587765
Q ss_pred cccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccC
Q psy17793 149 NTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKK 228 (397)
Q Consensus 149 ~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkp 228 (397)
... ...++||.|++|+- +... .+.++. +.++|+|
T Consensus 125 l~~---------~~~~~fDliFIDad-------------------K~~y-------p~~le~-----------~~~lLr~ 158 (219)
T COG4122 125 LSR---------LLDGSFDLVFIDAD-------------------KADY-------PEYLER-----------ALPLLRP 158 (219)
T ss_pred HHh---------ccCCCccEEEEeCC-------------------hhhC-------HHHHHH-----------HHHHhCC
Confidence 421 24589999999985 1221 455666 8899999
Q ss_pred CcEEEEEecCCC
Q psy17793 229 DGILVYCTCSLS 240 (397)
Q Consensus 229 gG~lvysTCS~~ 240 (397)
||.+|.-.-.+.
T Consensus 159 GGliv~DNvl~~ 170 (219)
T COG4122 159 GGLIVADNVLFG 170 (219)
T ss_pred CcEEEEeecccC
Confidence 999987654444
No 104
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.10 E-value=4.9e-10 Score=113.45 Aligned_cols=87 Identities=18% Similarity=0.195 Sum_probs=70.5
Q ss_pred HHHhccCCC-CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchh
Q psy17793 76 LAGHYLDVQ-PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQI 154 (397)
Q Consensus 76 l~~~~L~~~-~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~ 154 (397)
+++..+... ++.+|||++||+|..++.+|...+ ...|+++|+++.+++.+++|++.++++++++.+.|+..+..
T Consensus 47 ~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~---- 121 (382)
T PRK04338 47 LVLRAFGPKLPRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLH---- 121 (382)
T ss_pred HHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHh----
Confidence 333444333 457999999999999999988653 45899999999999999999999999988899999876531
Q ss_pred hHHHhhhcccCccEEEEcCC
Q psy17793 155 DIERMKLQKESFDRILLDAP 174 (397)
Q Consensus 155 d~~~~~~~~~~fD~Il~DpP 174 (397)
....||+|++|||
T Consensus 122 -------~~~~fD~V~lDP~ 134 (382)
T PRK04338 122 -------EERKFDVVDIDPF 134 (382)
T ss_pred -------hcCCCCEEEECCC
Confidence 0356999999998
No 105
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.10 E-value=7.2e-10 Score=102.12 Aligned_cols=113 Identities=14% Similarity=0.167 Sum_probs=82.2
Q ss_pred HHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhh
Q psy17793 76 LAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQID 155 (397)
Q Consensus 76 l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d 155 (397)
.+...+...++.+|||+|||+|..+..+|.. +..|+|+|+|+.+++.++++++..|++ +.+...|.....
T Consensus 21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~-v~~~~~d~~~~~------ 90 (195)
T TIGR00477 21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLP-LRTDAYDINAAA------ 90 (195)
T ss_pred HHHHHhccCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCC-ceeEeccchhcc------
Confidence 3335566666779999999999999999884 469999999999999999999988875 777777765431
Q ss_pred HHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793 156 IERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC 235 (397)
Q Consensus 156 ~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys 235 (397)
+ .++||.|++..... ... ... ...+++. +.++|||||++++.
T Consensus 91 -----~-~~~fD~I~~~~~~~----------~~~----~~~-------~~~~l~~-----------~~~~LkpgG~lli~ 132 (195)
T TIGR00477 91 -----L-NEDYDFIFSTVVFM----------FLQ----AGR-------VPEIIAN-----------MQAHTRPGGYNLIV 132 (195)
T ss_pred -----c-cCCCCEEEEecccc----------cCC----HHH-------HHHHHHH-----------HHHHhCCCcEEEEE
Confidence 2 35799999743310 001 111 1456777 88999999996655
Q ss_pred e
Q psy17793 236 T 236 (397)
Q Consensus 236 T 236 (397)
+
T Consensus 133 ~ 133 (195)
T TIGR00477 133 A 133 (195)
T ss_pred E
Confidence 3
No 106
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.10 E-value=9e-10 Score=101.15 Aligned_cols=82 Identities=16% Similarity=0.134 Sum_probs=66.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccchhhHHHhhhcc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQIDIERMKLQK 163 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~~d~~~~~~~~ 163 (397)
+|.+|||+|||+|..++.++.+ +...|+++|.++..++.+++|++.+++. ++++++.|+...... .....
T Consensus 49 ~g~~vLDLfaGsG~lglea~sr--ga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~-------~~~~~ 119 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSR--GAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKF-------LAKKP 119 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHH-------hhccC
Confidence 5789999999999999988885 4568999999999999999999999986 689999999665311 00011
Q ss_pred cCccEEEEcCCC
Q psy17793 164 ESFDRILLDAPC 175 (397)
Q Consensus 164 ~~fD~Il~DpPC 175 (397)
..||+|++|||+
T Consensus 120 ~~~dvv~~DPPy 131 (189)
T TIGR00095 120 TFDNVIYLDPPF 131 (189)
T ss_pred CCceEEEECcCC
Confidence 248999999995
No 107
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.10 E-value=9.1e-10 Score=105.27 Aligned_cols=114 Identities=16% Similarity=0.204 Sum_probs=85.2
Q ss_pred echhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEccccccc
Q psy17793 70 QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRIN 149 (397)
Q Consensus 70 Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~ 149 (397)
|...+.-+...+.+.++.+|||+|||+|..+..++... +.++|+|+|+|+.+++.+++++ .++.+..+|+..+.
T Consensus 16 ~~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~~ 89 (258)
T PRK01683 16 RTRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL-----PDCQFVEADIASWQ 89 (258)
T ss_pred hhcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhccC
Confidence 44344444455667788999999999999999999875 4579999999999999998763 46788888886552
Q ss_pred ccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCC
Q psy17793 150 TSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKD 229 (397)
Q Consensus 150 ~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpg 229 (397)
...+||+|+++... ..+.. +.++|++ +.+.||||
T Consensus 90 ------------~~~~fD~v~~~~~l-------------------~~~~d----~~~~l~~-----------~~~~Lkpg 123 (258)
T PRK01683 90 ------------PPQALDLIFANASL-------------------QWLPD----HLELFPR-----------LVSLLAPG 123 (258)
T ss_pred ------------CCCCccEEEEccCh-------------------hhCCC----HHHHHHH-----------HHHhcCCC
Confidence 23589999985430 11111 2567777 89999999
Q ss_pred cEEEEE
Q psy17793 230 GILVYC 235 (397)
Q Consensus 230 G~lvys 235 (397)
|.++.+
T Consensus 124 G~~~~~ 129 (258)
T PRK01683 124 GVLAVQ 129 (258)
T ss_pred cEEEEE
Confidence 999886
No 108
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.10 E-value=5.8e-10 Score=111.93 Aligned_cols=88 Identities=17% Similarity=0.273 Sum_probs=66.2
Q ss_pred CeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchh--hH---HHhhh
Q psy17793 87 QKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQI--DI---ERMKL 161 (397)
Q Consensus 87 ~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~--d~---~~~~~ 161 (397)
++|||+|||+|.+++.++.. ...|+|+|+++.+++.+++|++.+|++|++++.+|+.++...... .. .....
T Consensus 199 ~~vlDl~~G~G~~sl~la~~---~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 275 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQN---FRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDL 275 (353)
T ss_pred CcEEEEeccccHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccc
Confidence 47999999999999988885 358999999999999999999999999999999999775311000 00 00000
Q ss_pred cccCccEEEEcCCCCC
Q psy17793 162 QKESFDRILLDAPCSG 177 (397)
Q Consensus 162 ~~~~fD~Il~DpPCSg 177 (397)
....||.|++|||-+|
T Consensus 276 ~~~~~d~v~lDPPR~G 291 (353)
T TIGR02143 276 KSYNCSTIFVDPPRAG 291 (353)
T ss_pred ccCCCCEEEECCCCCC
Confidence 0124899999999544
No 109
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.10 E-value=4.2e-10 Score=107.25 Aligned_cols=115 Identities=17% Similarity=0.120 Sum_probs=85.4
Q ss_pred EechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccc
Q psy17793 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRI 148 (397)
Q Consensus 69 ~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~ 148 (397)
+|...+..+...+...++.+|||+|||+|..+..++.. ..+|+++|+|+.+++.++++.. .+.++++|+..+
T Consensus 26 ~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~~ 97 (251)
T PRK10258 26 LQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA-----ADHYLAGDIESL 97 (251)
T ss_pred HHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC-----CCCEEEcCcccC
Confidence 57666666666776667789999999999999888763 4689999999999999887642 235677887654
Q ss_pred cccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccC
Q psy17793 149 NTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKK 228 (397)
Q Consensus 149 ~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkp 228 (397)
. +..++||+|+++.+ ..| ... ...+|.+ +.++|||
T Consensus 98 ~-----------~~~~~fD~V~s~~~-----------l~~--------~~d----~~~~l~~-----------~~~~Lk~ 132 (251)
T PRK10258 98 P-----------LATATFDLAWSNLA-----------VQW--------CGN----LSTALRE-----------LYRVVRP 132 (251)
T ss_pred c-----------CCCCcEEEEEECch-----------hhh--------cCC----HHHHHHH-----------HHHHcCC
Confidence 2 45568999997432 111 111 1567777 8999999
Q ss_pred CcEEEEEe
Q psy17793 229 DGILVYCT 236 (397)
Q Consensus 229 gG~lvysT 236 (397)
||.++++|
T Consensus 133 gG~l~~~~ 140 (251)
T PRK10258 133 GGVVAFTT 140 (251)
T ss_pred CeEEEEEe
Confidence 99999985
No 110
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.09 E-value=5.5e-10 Score=106.88 Aligned_cols=104 Identities=18% Similarity=0.194 Sum_probs=79.6
Q ss_pred HhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHH
Q psy17793 78 GHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIE 157 (397)
Q Consensus 78 ~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~ 157 (397)
...+...++.+|||+|||+|..+..++... +..+|+|+|+|+.+++.++++ ++++..+|+..+.
T Consensus 22 l~~l~~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~-------- 85 (255)
T PRK14103 22 LARVGAERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARER-------GVDARTGDVRDWK-------- 85 (255)
T ss_pred HHhCCCCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhCC--------
Confidence 345666788999999999999999999875 457999999999999988653 4678888886542
Q ss_pred HhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793 158 RMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC 235 (397)
Q Consensus 158 ~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys 235 (397)
..++||+|+++.. +..+.. +.+++++ +.+.|||||.++..
T Consensus 86 ----~~~~fD~v~~~~~----------------------l~~~~d-~~~~l~~-----------~~~~LkpgG~l~~~ 125 (255)
T PRK14103 86 ----PKPDTDVVVSNAA----------------------LQWVPE-HADLLVR-----------WVDELAPGSWIAVQ 125 (255)
T ss_pred ----CCCCceEEEEehh----------------------hhhCCC-HHHHHHH-----------HHHhCCCCcEEEEE
Confidence 2368999998443 111111 2567777 89999999999876
No 111
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.08 E-value=4e-10 Score=104.71 Aligned_cols=122 Identities=16% Similarity=0.281 Sum_probs=91.0
Q ss_pred HHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccch
Q psy17793 75 ILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQ 153 (397)
Q Consensus 75 ~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~ 153 (397)
.++..++......+||++|++.|.-|+++|..+++.++|+++|+++.+.+.+++++++.|+. +|+++.+|+.......
T Consensus 35 ~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l- 113 (205)
T PF01596_consen 35 QLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPEL- 113 (205)
T ss_dssp HHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHH-
T ss_pred HHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHH-
Confidence 34444444444569999999999999999998888899999999999999999999999986 5999999998764210
Q ss_pred hhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEE
Q psy17793 154 IDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILV 233 (397)
Q Consensus 154 ~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lv 233 (397)
......+.||.|++|+. +... ...++. +.++|++||.|+
T Consensus 114 ----~~~~~~~~fD~VFiDa~-------------------K~~y-------~~y~~~-----------~~~ll~~ggvii 152 (205)
T PF01596_consen 114 ----ANDGEEGQFDFVFIDAD-------------------KRNY-------LEYFEK-----------ALPLLRPGGVII 152 (205)
T ss_dssp ----HHTTTTTSEEEEEEEST-------------------GGGH-------HHHHHH-----------HHHHEEEEEEEE
T ss_pred ----HhccCCCceeEEEEccc-------------------ccch-------hhHHHH-----------HhhhccCCeEEE
Confidence 00011357999999996 2222 233444 778999999999
Q ss_pred EEecC
Q psy17793 234 YCTCS 238 (397)
Q Consensus 234 ysTCS 238 (397)
.-..-
T Consensus 153 ~DN~l 157 (205)
T PF01596_consen 153 ADNVL 157 (205)
T ss_dssp EETTT
T ss_pred Ecccc
Confidence 87543
No 112
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=99.06 E-value=8.8e-10 Score=111.17 Aligned_cols=78 Identities=15% Similarity=0.188 Sum_probs=67.8
Q ss_pred CeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccCc
Q psy17793 87 QKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESF 166 (397)
Q Consensus 87 ~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~f 166 (397)
-+|||++||+|..++.++....+...|+++|+|+.+++.+++|++.+++.++++++.|+..+... ....|
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~----------~~~~f 115 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRY----------RNRKF 115 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHH----------hCCCC
Confidence 48999999999999999986545578999999999999999999999998899999999876421 23579
Q ss_pred cEEEEcCC
Q psy17793 167 DRILLDAP 174 (397)
Q Consensus 167 D~Il~DpP 174 (397)
|+|.+||+
T Consensus 116 DvIdlDPf 123 (374)
T TIGR00308 116 HVIDIDPF 123 (374)
T ss_pred CEEEeCCC
Confidence 99999996
No 113
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.06 E-value=1.4e-09 Score=113.18 Aligned_cols=114 Identities=24% Similarity=0.237 Sum_probs=85.4
Q ss_pred HHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH
Q psy17793 77 AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI 156 (397)
Q Consensus 77 ~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~ 156 (397)
+...+.+.++.+|||+|||+|..+..++... +.+|+|+|+|+.+++.++++....+ .++++..+|+....
T Consensus 258 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~-~~v~~~~~d~~~~~------- 327 (475)
T PLN02336 258 FVDKLDLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRK-CSVEFEVADCTKKT------- 327 (475)
T ss_pred HHHhcCCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCC-CceEEEEcCcccCC-------
Confidence 3344556788999999999999999998864 4689999999999999998876443 35889999987642
Q ss_pred HHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793 157 ERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT 236 (397)
Q Consensus 157 ~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT 236 (397)
++.++||+|++.- .+..+.+. .++|++ +.++|||||+|+.++
T Consensus 328 ----~~~~~fD~I~s~~----------------------~l~h~~d~-~~~l~~-----------~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 328 ----YPDNSFDVIYSRD----------------------TILHIQDK-PALFRS-----------FFKWLKPGGKVLISD 369 (475)
T ss_pred ----CCCCCEEEEEECC----------------------cccccCCH-HHHHHH-----------HHHHcCCCeEEEEEE
Confidence 3456899999721 11111111 467777 999999999999886
Q ss_pred cC
Q psy17793 237 CS 238 (397)
Q Consensus 237 CS 238 (397)
-.
T Consensus 370 ~~ 371 (475)
T PLN02336 370 YC 371 (475)
T ss_pred ec
Confidence 43
No 114
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.05 E-value=8.1e-10 Score=90.52 Aligned_cols=71 Identities=14% Similarity=0.213 Sum_probs=58.2
Q ss_pred EEEEcCCCChHHHHHHHHc--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccCc
Q psy17793 89 VLDMCAAPGNKLTHIALLM--NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESF 166 (397)
Q Consensus 89 VLDlcagpG~kt~~lA~~~--~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~f 166 (397)
|||+|||+|..+..++... +...+++++|+|+.+++.++++.+..+. ++++++.|+.++. +..++|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~-----------~~~~~~ 68 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLP-----------FSDGKF 68 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHH-----------HHSSSE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCc-----------ccCCCe
Confidence 7999999999999999886 2237999999999999999999998777 7899999998763 345689
Q ss_pred cEEEE
Q psy17793 167 DRILL 171 (397)
Q Consensus 167 D~Il~ 171 (397)
|.|++
T Consensus 69 D~v~~ 73 (101)
T PF13649_consen 69 DLVVC 73 (101)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 99997
No 115
>PHA03412 putative methyltransferase; Provisional
Probab=99.05 E-value=1.4e-09 Score=102.60 Aligned_cols=112 Identities=12% Similarity=0.173 Sum_probs=80.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHcC--CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLMN--DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ 162 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~~--~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~ 162 (397)
.+.+|||+|||+|..+..++..+. ....|+|+|+|+.+++.+++|+. ++.+...|+.... .
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-----~~~~~~~D~~~~~------------~ 111 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-----EATWINADALTTE------------F 111 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-----CCEEEEcchhccc------------c
Confidence 467999999999999999988653 34689999999999999998753 4778888886542 2
Q ss_pred ccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793 163 KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC 235 (397)
Q Consensus 163 ~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys 235 (397)
.++||+|++|||+.-.... +.. -. ... .....++++. |.+++++|+.|+-+
T Consensus 112 ~~~FDlIIsNPPY~~~~~~-d~~--ar----~~g----~~~~~~li~~-----------A~~Ll~~G~~ILP~ 162 (241)
T PHA03412 112 DTLFDMAISNPPFGKIKTS-DFK--GK----YTG----AEFEYKVIER-----------ASQIARQGTFIIPQ 162 (241)
T ss_pred cCCccEEEECCCCCCcccc-ccC--Cc----ccc----cHHHHHHHHH-----------HHHHcCCCEEEeCc
Confidence 3589999999998754321 000 00 011 1223667888 88888888775533
No 116
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.05 E-value=3.5e-09 Score=99.12 Aligned_cols=117 Identities=28% Similarity=0.430 Sum_probs=87.2
Q ss_pred HHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccchhh
Q psy17793 77 AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQID 155 (397)
Q Consensus 77 ~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~~d 155 (397)
....+...++.+|||+|||+|..+..++...+...+++++|+++.+++.+++++...+.. ++.+...|+....
T Consensus 43 ~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~------ 116 (239)
T PRK00216 43 TIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP------ 116 (239)
T ss_pred HHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC------
Confidence 344556677889999999999999999987643579999999999999999998876553 5888888887652
Q ss_pred HHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793 156 IERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC 235 (397)
Q Consensus 156 ~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys 235 (397)
+..+.||+|++.- + +...... ..+|+. +.++|++||.+++.
T Consensus 117 -----~~~~~~D~I~~~~-----~-----------------l~~~~~~-~~~l~~-----------~~~~L~~gG~li~~ 157 (239)
T PRK00216 117 -----FPDNSFDAVTIAF-----G-----------------LRNVPDI-DKALRE-----------MYRVLKPGGRLVIL 157 (239)
T ss_pred -----CCCCCccEEEEec-----c-----------------cccCCCH-HHHHHH-----------HHHhccCCcEEEEE
Confidence 2346799998621 0 0001111 456777 88999999999887
Q ss_pred ecC
Q psy17793 236 TCS 238 (397)
Q Consensus 236 TCS 238 (397)
+-+
T Consensus 158 ~~~ 160 (239)
T PRK00216 158 EFS 160 (239)
T ss_pred Eec
Confidence 544
No 117
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.03 E-value=3.4e-09 Score=100.35 Aligned_cols=107 Identities=18% Similarity=0.277 Sum_probs=81.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEEcccccccccchhhHHHhhh
Q psy17793 84 QPGQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQL-SSIQTHVYDSTRINTSSQIDIERMKL 161 (397)
Q Consensus 84 ~~g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~-~~v~~~~~D~~~~~~~~~~d~~~~~~ 161 (397)
.++.+|||+|||+|..+..++..+. +..+|+++|+|+.+++.++++++..+. .+++++.+|+..+. +
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~ 120 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE-----------I 120 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-----------C
Confidence 5778999999999999999988753 468999999999999999999988764 36899999987652 2
Q ss_pred cccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHH-HHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793 162 QKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYA-NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT 236 (397)
Q Consensus 162 ~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~-~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT 236 (397)
..+|.|++.-. +..+. ....+++++ +.+.|||||.++.+.
T Consensus 121 --~~~d~v~~~~~----------------------l~~~~~~~~~~~l~~-----------i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 121 --KNASMVILNFT----------------------LQFLPPEDRIALLTK-----------IYEGLNPNGVLVLSE 161 (239)
T ss_pred --CCCCEEeeecc----------------------hhhCCHHHHHHHHHH-----------HHHhcCCCeEEEEee
Confidence 35898875211 01111 112567888 999999999999874
No 118
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.01 E-value=3.2e-09 Score=103.54 Aligned_cols=104 Identities=21% Similarity=0.238 Sum_probs=78.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793 84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK 163 (397)
Q Consensus 84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~ 163 (397)
.++.+|||+|||+|..+..+|.. +.+|+|+|+|+.+++.++++++..++ ++++...|+.... ..
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~~------------~~ 182 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSAS------------IQ 182 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhccc------------cc
Confidence 34459999999999999999883 47999999999999999999999988 7888888876542 24
Q ss_pred cCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793 164 ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC 235 (397)
Q Consensus 164 ~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys 235 (397)
++||+|++.... ..+ . .+....++++ +.++|||||++++.
T Consensus 183 ~~fD~I~~~~vl-------------------~~l-~-~~~~~~~l~~-----------~~~~LkpgG~~l~v 222 (287)
T PRK12335 183 EEYDFILSTVVL-------------------MFL-N-RERIPAIIKN-----------MQEHTNPGGYNLIV 222 (287)
T ss_pred CCccEEEEcchh-------------------hhC-C-HHHHHHHHHH-----------HHHhcCCCcEEEEE
Confidence 689999973210 000 0 0112567777 88999999996653
No 119
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.98 E-value=6.9e-09 Score=96.05 Aligned_cols=114 Identities=25% Similarity=0.305 Sum_probs=83.8
Q ss_pred HhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHH
Q psy17793 78 GHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIE 157 (397)
Q Consensus 78 ~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~ 157 (397)
...+...++.+|||+|||+|..+..++......++++++|+++..++.++++.. ...++.+...|+....
T Consensus 32 ~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~-------- 101 (223)
T TIGR01934 32 VKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALP-------- 101 (223)
T ss_pred HHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCC--------
Confidence 334445578899999999999999999876433689999999999999998876 3346888888887652
Q ss_pred HhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEec
Q psy17793 158 RMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC 237 (397)
Q Consensus 158 ~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTC 237 (397)
+..+.||+|++.- + . . ..... ..+|++ +.++|+|||+++..+.
T Consensus 102 ---~~~~~~D~i~~~~---~--~------~-----------~~~~~-~~~l~~-----------~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 102 ---FEDNSFDAVTIAF---G--L------R-----------NVTDI-QKALRE-----------MYRVLKPGGRLVILEF 144 (223)
T ss_pred ---CCCCcEEEEEEee---e--e------C-----------CcccH-HHHHHH-----------HHHHcCCCcEEEEEEe
Confidence 2346799998621 0 0 0 00111 456777 8899999999998765
Q ss_pred C
Q psy17793 238 S 238 (397)
Q Consensus 238 S 238 (397)
+
T Consensus 145 ~ 145 (223)
T TIGR01934 145 S 145 (223)
T ss_pred c
Confidence 5
No 120
>PRK04457 spermidine synthase; Provisional
Probab=98.97 E-value=1e-08 Score=98.85 Aligned_cols=132 Identities=14% Similarity=0.137 Sum_probs=92.8
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEEcccccccccchhhHHHhhh
Q psy17793 83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL-SSIQTHVYDSTRINTSSQIDIERMKL 161 (397)
Q Consensus 83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~-~~v~~~~~D~~~~~~~~~~d~~~~~~ 161 (397)
..++.+|||+|+|.|..+..++... +..+|+++|+|+..++.+++++...+. ++++++.+|+..+...
T Consensus 64 ~~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~---------- 132 (262)
T PRK04457 64 NPRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAV---------- 132 (262)
T ss_pred CCCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHh----------
Confidence 3456789999999999999898875 567999999999999999998765543 5799999999876421
Q ss_pred cccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCc
Q psy17793 162 QKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSV 241 (397)
Q Consensus 162 ~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~ 241 (397)
..++||+|++|+- .+.+. | ..+ ...++++. +.+.|+|||+++....+-.
T Consensus 133 ~~~~yD~I~~D~~-~~~~~-~------------~~l-----~t~efl~~-----------~~~~L~pgGvlvin~~~~~- 181 (262)
T PRK04457 133 HRHSTDVILVDGF-DGEGI-I------------DAL-----CTQPFFDD-----------CRNALSSDGIFVVNLWSRD- 181 (262)
T ss_pred CCCCCCEEEEeCC-CCCCC-c------------ccc-----CcHHHHHH-----------HHHhcCCCcEEEEEcCCCc-
Confidence 2357999999963 22111 0 100 01566777 8899999999998644322
Q ss_pred cccHHHHHHHHHHCC
Q psy17793 242 EENEAVIAWILHRHP 256 (397)
Q Consensus 242 eEnE~vV~~~L~~~~ 256 (397)
....+.++.+-+.++
T Consensus 182 ~~~~~~l~~l~~~F~ 196 (262)
T PRK04457 182 KRYDRYLERLESSFE 196 (262)
T ss_pred hhHHHHHHHHHHhcC
Confidence 223445555544454
No 121
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=9.9e-09 Score=94.67 Aligned_cols=133 Identities=23% Similarity=0.231 Sum_probs=87.6
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhc
Q psy17793 83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ 162 (397)
Q Consensus 83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~ 162 (397)
.++|..|+|+||+||+++..++..++.++.|+|+|+.|-. -+.+|.++.+|++.-... .+. ...+.
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------~~~~V~~iq~d~~~~~~~--~~l-~~~l~ 108 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------PIPGVIFLQGDITDEDTL--EKL-LEALG 108 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------cCCCceEEeeeccCccHH--HHH-HHHcC
Confidence 3678999999999999999999999888899999998754 245689999999865311 010 01123
Q ss_pred ccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCcc
Q psy17793 163 KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVE 242 (397)
Q Consensus 163 ~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~e 242 (397)
...+|+|++|+- |+..-.++ -... .+..+...|+.| |...|++||.++.. .+..+
T Consensus 109 ~~~~DvV~sD~a-------p~~~g~~~----~Dh~-----r~~~L~~~a~~~-------a~~vL~~~G~fv~K--~fqg~ 163 (205)
T COG0293 109 GAPVDVVLSDMA-------PNTSGNRS----VDHA-----RSMYLCELALEF-------ALEVLKPGGSFVAK--VFQGE 163 (205)
T ss_pred CCCcceEEecCC-------CCcCCCcc----ccHH-----HHHHHHHHHHHH-------HHHeeCCCCeEEEE--EEeCC
Confidence 345799999985 33333333 1111 123344445555 88999999999986 34444
Q ss_pred ccHHHHHHHHHHC
Q psy17793 243 ENEAVIAWILHRH 255 (397)
Q Consensus 243 EnE~vV~~~L~~~ 255 (397)
+.+ .+.+.++++
T Consensus 164 ~~~-~~l~~~~~~ 175 (205)
T COG0293 164 DFE-DLLKALRRL 175 (205)
T ss_pred CHH-HHHHHHHHh
Confidence 444 444445443
No 122
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.97 E-value=3.5e-09 Score=104.94 Aligned_cols=101 Identities=28% Similarity=0.392 Sum_probs=83.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccchhhHHHhhhc
Q psy17793 84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQ 162 (397)
Q Consensus 84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~~ 162 (397)
.+|++|+||+||-|.+|+.+|.. +..+|+|+|+||.+++.|++|++.+++.+ |+.+++|++.... .
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~--g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~-----------~ 253 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKK--GRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAP-----------E 253 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhc--CCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhh-----------c
Confidence 56999999999999999999985 44459999999999999999999999988 8999999988741 2
Q ss_pred ccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793 163 KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC 235 (397)
Q Consensus 163 ~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys 235 (397)
.+.+|+|++.-|=+ +.+.+.. |.+++++||.+.|-
T Consensus 254 ~~~aDrIim~~p~~---------------------------a~~fl~~-----------A~~~~k~~g~iHyy 288 (341)
T COG2520 254 LGVADRIIMGLPKS---------------------------AHEFLPL-----------ALELLKDGGIIHYY 288 (341)
T ss_pred cccCCEEEeCCCCc---------------------------chhhHHH-----------HHHHhhcCcEEEEE
Confidence 26799999977611 1334455 88899999998775
No 123
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.96 E-value=5.7e-09 Score=97.52 Aligned_cols=104 Identities=22% Similarity=0.231 Sum_probs=81.4
Q ss_pred CeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccchhhHHHhhhcccC
Q psy17793 87 QKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQIDIERMKLQKES 165 (397)
Q Consensus 87 ~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~~d~~~~~~~~~~ 165 (397)
++|||+|||+|+.+..+++.. +..+|+++|+|+..++.++++++..|+. ++++...|..... + .++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~-----------~-~~~ 67 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDP-----------F-PDT 67 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCC-----------C-CCC
Confidence 379999999999999998875 3578999999999999999999998875 4888888875432 2 357
Q ss_pred ccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEec
Q psy17793 166 FDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC 237 (397)
Q Consensus 166 fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTC 237 (397)
||+|++ ...+..... ...++++ +.++|||||.++.++.
T Consensus 68 fD~I~~----------------------~~~l~~~~~-~~~~l~~-----------~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 68 YDLVFG----------------------FEVIHHIKD-KMDLFSN-----------ISRHLKDGGHLVLADF 105 (224)
T ss_pred CCEeeh----------------------HHHHHhCCC-HHHHHHH-----------HHHHcCCCCEEEEEEc
Confidence 999985 222332222 2677888 9999999999998753
No 124
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.96 E-value=1.9e-09 Score=96.33 Aligned_cols=81 Identities=21% Similarity=0.274 Sum_probs=59.2
Q ss_pred CeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccchhhHHHhhhcccC
Q psy17793 87 QKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQIDIERMKLQKES 165 (397)
Q Consensus 87 ~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~~d~~~~~~~~~~ 165 (397)
+.|+|+|||.||-|+++|.. ..+|+|+|+|+.+++.++.|++-+|+. +|.++++|+.+.... .....
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~---~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~---------~~~~~ 68 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFART---FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKR---------LKSNK 68 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHT---T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGG---------B----
T ss_pred CEEEEeccCcCHHHHHHHHh---CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhh---------ccccc
Confidence 36999999999999999995 458999999999999999999999975 699999999886422 11122
Q ss_pred -ccEEEEcCCCCCCC
Q psy17793 166 -FDRILLDAPCSGFG 179 (397)
Q Consensus 166 -fD~Il~DpPCSg~G 179 (397)
||.|+++||--|-.
T Consensus 69 ~~D~vFlSPPWGGp~ 83 (163)
T PF09445_consen 69 IFDVVFLSPPWGGPS 83 (163)
T ss_dssp --SEEEE---BSSGG
T ss_pred cccEEEECCCCCCcc
Confidence 89999999977644
No 125
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.96 E-value=1.3e-08 Score=100.37 Aligned_cols=116 Identities=16% Similarity=0.109 Sum_probs=79.5
Q ss_pred ccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEEcccccccccchhhHHH
Q psy17793 80 YLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ-LSSIQTHVYDSTRINTSSQIDIER 158 (397)
Q Consensus 80 ~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g-~~~v~~~~~D~~~~~~~~~~d~~~ 158 (397)
.+.+.+|++|||+|||+|..+..++.. +...|+|+|.|+.++..++..-+..+ ..++.+...|+..+.
T Consensus 116 ~l~~~~g~~VLDvGCG~G~~~~~~~~~--g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp--------- 184 (314)
T TIGR00452 116 HLSPLKGRTILDVGCGSGYHMWRMLGH--GAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLH--------- 184 (314)
T ss_pred hcCCCCCCEEEEeccCCcHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCC---------
Confidence 345678899999999999998887764 34589999999999877544333322 235677777765542
Q ss_pred hhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793 159 MKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS 238 (397)
Q Consensus 159 ~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS 238 (397)
. ...||.|++. ..+.+.... ...|.+ +.+.|||||.|+++|..
T Consensus 185 --~-~~~FD~V~s~----------------------gvL~H~~dp-~~~L~e-----------l~r~LkpGG~Lvletl~ 227 (314)
T TIGR00452 185 --E-LYAFDTVFSM----------------------GVLYHRKSP-LEHLKQ-----------LKHQLVIKGELVLETLV 227 (314)
T ss_pred --C-CCCcCEEEEc----------------------chhhccCCH-HHHHHH-----------HHHhcCCCCEEEEEEEE
Confidence 1 2479999961 111111112 456777 89999999999998765
Q ss_pred CCccc
Q psy17793 239 LSVEE 243 (397)
Q Consensus 239 ~~~eE 243 (397)
+...+
T Consensus 228 i~g~~ 232 (314)
T TIGR00452 228 IDGDL 232 (314)
T ss_pred ecCcc
Confidence 54433
No 126
>PLN03075 nicotianamine synthase; Provisional
Probab=98.95 E-value=2.5e-09 Score=104.23 Aligned_cols=108 Identities=13% Similarity=0.081 Sum_probs=82.4
Q ss_pred CCCeEEEEcCCCChHHHHHH-HHcCCCcEEEEEeCCHHHHHHHHHHHHH-hCCCc-EEEEEcccccccccchhhHHHhhh
Q psy17793 85 PGQKVLDMCAAPGNKLTHIA-LLMNDTGTLIALDKSKPRVTKLEETIKK-LQLSS-IQTHVYDSTRINTSSQIDIERMKL 161 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA-~~~~~~~~V~avD~s~~rl~~l~~n~~~-~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~ 161 (397)
+.++|+|+|||||+.|..+. +...++++++++|+|+.+++.+++++++ .|+.+ |++..+|+.+...
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~----------- 191 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE----------- 191 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc-----------
Confidence 67899999999997765443 3445778999999999999999999965 78865 9999999976521
Q ss_pred cccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793 162 QKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT 236 (397)
Q Consensus 162 ~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT 236 (397)
..+.||+|++++ + ..|. .+.+.++|++ ..+.|+|||.+++-+
T Consensus 192 ~l~~FDlVF~~A-L----------i~~d-----------k~~k~~vL~~-----------l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 192 SLKEYDVVFLAA-L----------VGMD-----------KEEKVKVIEH-----------LGKHMAPGALLMLRS 233 (296)
T ss_pred ccCCcCEEEEec-c----------cccc-----------cccHHHHHHH-----------HHHhcCCCcEEEEec
Confidence 135799999963 1 1111 0122677888 899999999999974
No 127
>KOG1270|consensus
Probab=98.94 E-value=2.3e-09 Score=101.35 Aligned_cols=101 Identities=23% Similarity=0.301 Sum_probs=77.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC-CC--c----EEEEEcccccccccchhhH
Q psy17793 84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ-LS--S----IQTHVYDSTRINTSSQIDI 156 (397)
Q Consensus 84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g-~~--~----v~~~~~D~~~~~~~~~~d~ 156 (397)
..|.+|||+|||.|..|.+||.+ +..|+|+|.++.+++.+++. +.+. .. + +++.+.|+...
T Consensus 88 ~~g~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h-~~~dP~~~~~~~y~l~~~~~~~E~~-------- 155 (282)
T KOG1270|consen 88 LLGMKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEH-KKMDPVLEGAIAYRLEYEDTDVEGL-------- 155 (282)
T ss_pred cCCceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHh-hhcCchhccccceeeehhhcchhhc--------
Confidence 34688999999999999999996 47999999999999999998 4432 21 1 33333443332
Q ss_pred HHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793 157 ERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT 236 (397)
Q Consensus 157 ~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT 236 (397)
.+.||.|+| -+.+++.... .+++.. ..++|||||+|+.+|
T Consensus 156 ------~~~fDaVvc----------------------sevleHV~dp-~~~l~~-----------l~~~lkP~G~lfitt 195 (282)
T KOG1270|consen 156 ------TGKFDAVVC----------------------SEVLEHVKDP-QEFLNC-----------LSALLKPNGRLFITT 195 (282)
T ss_pred ------ccccceeee----------------------HHHHHHHhCH-HHHHHH-----------HHHHhCCCCceEeee
Confidence 245999998 4777777666 567787 899999999999994
No 128
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.93 E-value=6.7e-09 Score=103.04 Aligned_cols=112 Identities=18% Similarity=0.135 Sum_probs=80.0
Q ss_pred HhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEEcccccccccchhhH
Q psy17793 78 GHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL-SSIQTHVYDSTRINTSSQIDI 156 (397)
Q Consensus 78 ~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~-~~v~~~~~D~~~~~~~~~~d~ 156 (397)
...+.+.+|.+|||+|||+|..+..++.. +...|+|+|.|+.++...+...+..+. .+|.+..+|+..+.
T Consensus 115 ~~~l~~l~g~~VLDIGCG~G~~~~~la~~--g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp------- 185 (322)
T PRK15068 115 LPHLSPLKGRTVLDVGCGNGYHMWRMLGA--GAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLP------- 185 (322)
T ss_pred HHhhCCCCCCEEEEeccCCcHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCC-------
Confidence 33556667899999999999999988885 345799999999988765544343332 36888888887652
Q ss_pred HHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793 157 ERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT 236 (397)
Q Consensus 157 ~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT 236 (397)
+ .+.||.|++ .+ .+.+.... ..+|++ +.+.|||||.++++|
T Consensus 186 ----~-~~~FD~V~s----~~------------------vl~H~~dp-~~~L~~-----------l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 186 ----A-LKAFDTVFS----MG------------------VLYHRRSP-LDHLKQ-----------LKDQLVPGGELVLET 226 (322)
T ss_pred ----C-cCCcCEEEE----CC------------------hhhccCCH-HHHHHH-----------HHHhcCCCcEEEEEE
Confidence 3 568999996 11 11111111 456777 899999999999886
Q ss_pred c
Q psy17793 237 C 237 (397)
Q Consensus 237 C 237 (397)
-
T Consensus 227 ~ 227 (322)
T PRK15068 227 L 227 (322)
T ss_pred E
Confidence 4
No 129
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.92 E-value=2.5e-08 Score=93.79 Aligned_cols=115 Identities=16% Similarity=0.180 Sum_probs=84.0
Q ss_pred HHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhh
Q psy17793 76 LAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQID 155 (397)
Q Consensus 76 l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d 155 (397)
++...+.+.++.+|||+|||+|..+..++.. ...++++|.++..++.+++++...+. ++.+...|.....
T Consensus 39 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~------ 108 (233)
T PRK05134 39 YIREHAGGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELA------ 108 (233)
T ss_pred HHHHhccCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhh------
Confidence 4444455667889999999999999888774 35799999999999999999988776 5677777765542
Q ss_pred HHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793 156 IERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC 235 (397)
Q Consensus 156 ~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys 235 (397)
....+.||+|++.-. +...... ..+|+. +.++|+|||.++.+
T Consensus 109 ----~~~~~~fD~Ii~~~~----------------------l~~~~~~-~~~l~~-----------~~~~L~~gG~l~v~ 150 (233)
T PRK05134 109 ----AEHPGQFDVVTCMEM----------------------LEHVPDP-ASFVRA-----------CAKLVKPGGLVFFS 150 (233)
T ss_pred ----hhcCCCccEEEEhhH----------------------hhccCCH-HHHHHH-----------HHHHcCCCcEEEEE
Confidence 113468999997221 1111111 456777 88899999999998
Q ss_pred ecC
Q psy17793 236 TCS 238 (397)
Q Consensus 236 TCS 238 (397)
++.
T Consensus 151 ~~~ 153 (233)
T PRK05134 151 TLN 153 (233)
T ss_pred ecC
Confidence 764
No 130
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.91 E-value=8.4e-09 Score=98.49 Aligned_cols=126 Identities=17% Similarity=0.200 Sum_probs=94.7
Q ss_pred chhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEccccccc
Q psy17793 71 NLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRIN 149 (397)
Q Consensus 71 d~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~ 149 (397)
.....++..++....-.+||++|++.|.-|+.+|..++..++|+++|.++.+.+.+++++++.|+. +|+++.+|+...+
T Consensus 65 ~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L 144 (247)
T PLN02589 65 ADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVL 144 (247)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHH
Confidence 445566666666656679999999999999999998877899999999999999999999999975 5999999997764
Q ss_pred ccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCC
Q psy17793 150 TSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKD 229 (397)
Q Consensus 150 ~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpg 229 (397)
.....+ ....++||.|++|+- +.... ..++. +.++|++|
T Consensus 145 ~~l~~~----~~~~~~fD~iFiDad-------------------K~~Y~-------~y~~~-----------~l~ll~~G 183 (247)
T PLN02589 145 DQMIED----GKYHGTFDFIFVDAD-------------------KDNYI-------NYHKR-----------LIDLVKVG 183 (247)
T ss_pred HHHHhc----cccCCcccEEEecCC-------------------HHHhH-------HHHHH-----------HHHhcCCC
Confidence 210000 001258999999984 23222 23344 77899999
Q ss_pred cEEEEEec
Q psy17793 230 GILVYCTC 237 (397)
Q Consensus 230 G~lvysTC 237 (397)
|.|+.-..
T Consensus 184 Gviv~DNv 191 (247)
T PLN02589 184 GVIGYDNT 191 (247)
T ss_pred eEEEEcCC
Confidence 99987543
No 131
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.91 E-value=9.7e-09 Score=104.20 Aligned_cols=112 Identities=21% Similarity=0.253 Sum_probs=82.0
Q ss_pred HHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhh
Q psy17793 76 LAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQID 155 (397)
Q Consensus 76 l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d 155 (397)
.+...+.+++|++|||+|||+|+.+.++|... +.+|+|+|+|+.+++.++++++ ++ ++++...|...+
T Consensus 158 ~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~--~l-~v~~~~~D~~~l------- 225 (383)
T PRK11705 158 LICRKLQLKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCA--GL-PVEIRLQDYRDL------- 225 (383)
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc--cC-eEEEEECchhhc-------
Confidence 44556778899999999999999999998864 4689999999999999999885 33 367777776432
Q ss_pred HHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793 156 IERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC 235 (397)
Q Consensus 156 ~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys 235 (397)
.++||.|++-.. -..+. ... ...+++. +.++|||||+++..
T Consensus 226 -------~~~fD~Ivs~~~-------------------~ehvg-~~~-~~~~l~~-----------i~r~LkpGG~lvl~ 266 (383)
T PRK11705 226 -------NGQFDRIVSVGM-------------------FEHVG-PKN-YRTYFEV-----------VRRCLKPDGLFLLH 266 (383)
T ss_pred -------CCCCCEEEEeCc-------------------hhhCC-hHH-HHHHHHH-----------HHHHcCCCcEEEEE
Confidence 357999986221 01110 001 1456777 89999999999987
Q ss_pred ecC
Q psy17793 236 TCS 238 (397)
Q Consensus 236 TCS 238 (397)
+.+
T Consensus 267 ~i~ 269 (383)
T PRK11705 267 TIG 269 (383)
T ss_pred Ecc
Confidence 543
No 132
>PRK00811 spermidine synthase; Provisional
Probab=98.91 E-value=1.2e-08 Score=99.44 Aligned_cols=112 Identities=17% Similarity=0.267 Sum_probs=82.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC-----CCcEEEEEcccccccccchhhHHH
Q psy17793 84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ-----LSSIQTHVYDSTRINTSSQIDIER 158 (397)
Q Consensus 84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g-----~~~v~~~~~D~~~~~~~~~~d~~~ 158 (397)
...++|||+|+|.|+.+..+++. .+..+|+++|+|+..++.+++.+...+ -.+++++.+|+..+..
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~-~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~-------- 145 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKH-PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVA-------- 145 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcC-CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHh--------
Confidence 34579999999999999888764 245689999999999999999987653 2459999999987642
Q ss_pred hhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793 159 MKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT 236 (397)
Q Consensus 159 ~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT 236 (397)
...++||+|++|.+ .|. . ....+ ...++++. +.+.|+|||+++..+
T Consensus 146 --~~~~~yDvIi~D~~------dp~-----~---~~~~l-----~t~ef~~~-----------~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 146 --ETENSFDVIIVDST------DPV-----G---PAEGL-----FTKEFYEN-----------CKRALKEDGIFVAQS 191 (283)
T ss_pred --hCCCcccEEEECCC------CCC-----C---chhhh-----hHHHHHHH-----------HHHhcCCCcEEEEeC
Confidence 13468999999964 010 0 01111 12566677 888999999998753
No 133
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.91 E-value=2.9e-08 Score=91.21 Aligned_cols=115 Identities=21% Similarity=0.216 Sum_probs=79.4
Q ss_pred hHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc
Q psy17793 73 PSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS 152 (397)
Q Consensus 73 ~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~ 152 (397)
-|.+. .+++.-+..++||+|||.|.-++.+|++ +-.|+|+|+|+..++.+++.+++.+++ |++...|.....
T Consensus 19 hs~v~-~a~~~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~-i~~~~~Dl~~~~--- 90 (192)
T PF03848_consen 19 HSEVL-EAVPLLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLD-IRTRVADLNDFD--- 90 (192)
T ss_dssp -HHHH-HHCTTS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-T-EEEEE-BGCCBS---
T ss_pred cHHHH-HHHhhcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCce-eEEEEecchhcc---
Confidence 34433 4455555679999999999999999994 678999999999999999999999886 999999987652
Q ss_pred hhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEE
Q psy17793 153 QIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGIL 232 (397)
Q Consensus 153 ~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~l 232 (397)
+ .+.||.|++..- .. +++. ... .+++++ ..+.++|||++
T Consensus 91 --------~-~~~yD~I~st~v----------~~---fL~~-~~~-------~~i~~~-----------m~~~~~pGG~~ 129 (192)
T PF03848_consen 91 --------F-PEEYDFIVSTVV----------FM---FLQR-ELR-------PQIIEN-----------MKAATKPGGYN 129 (192)
T ss_dssp ----------TTTEEEEEEESS----------GG---GS-G-GGH-------HHHHHH-----------HHHTEEEEEEE
T ss_pred --------c-cCCcCEEEEEEE----------ec---cCCH-HHH-------HHHHHH-----------HHhhcCCcEEE
Confidence 2 367999986211 00 1111 111 345555 66789999999
Q ss_pred EEEe
Q psy17793 233 VYCT 236 (397)
Q Consensus 233 vysT 236 (397)
++.|
T Consensus 130 li~~ 133 (192)
T PF03848_consen 130 LIVT 133 (192)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8854
No 134
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.90 E-value=1.7e-08 Score=100.55 Aligned_cols=103 Identities=17% Similarity=0.220 Sum_probs=77.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793 84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK 163 (397)
Q Consensus 84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~ 163 (397)
.++.+|||+|||+|..+..++... +..+|+++|.|+.+++.++++.. ..+++++.+|+.... +..
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~lp-----------~~~ 176 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDLP-----------FPT 176 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhCC-----------CCC
Confidence 467899999999999998888865 34789999999999999998754 346788888886542 445
Q ss_pred cCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793 164 ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC 235 (397)
Q Consensus 164 ~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys 235 (397)
++||+|++... +..+.+. .++|++ +.++|||||++++.
T Consensus 177 ~sFDvVIs~~~----------------------L~~~~d~-~~~L~e-----------~~rvLkPGG~LvIi 214 (340)
T PLN02490 177 DYADRYVSAGS----------------------IEYWPDP-QRGIKE-----------AYRVLKIGGKACLI 214 (340)
T ss_pred CceeEEEEcCh----------------------hhhCCCH-HHHHHH-----------HHHhcCCCcEEEEE
Confidence 78999997321 1111111 346778 99999999999875
No 135
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.90 E-value=1.9e-08 Score=98.90 Aligned_cols=123 Identities=11% Similarity=0.122 Sum_probs=90.5
Q ss_pred HHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccch
Q psy17793 75 ILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQ 153 (397)
Q Consensus 75 ~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~ 153 (397)
..+...++..++.+|||+|||+|..+..+++.. +..+++++|. +..++.+++++++.|+. +|+++.+|+.+..
T Consensus 139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~---- 212 (306)
T TIGR02716 139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES---- 212 (306)
T ss_pred HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC----
Confidence 334455667788999999999999999999875 5679999997 78999999999999985 5999999987531
Q ss_pred hhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEE
Q psy17793 154 IDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILV 233 (397)
Q Consensus 154 ~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lv 233 (397)
+ ..+|.|++ + .+...|. .. ...++|++ +.+.|||||+|+
T Consensus 213 -------~--~~~D~v~~----~------~~lh~~~----~~-------~~~~il~~-----------~~~~L~pgG~l~ 251 (306)
T TIGR02716 213 -------Y--PEADAVLF----C------RILYSAN----EQ-------LSTIMCKK-----------AFDAMRSGGRLL 251 (306)
T ss_pred -------C--CCCCEEEe----E------hhhhcCC----hH-------HHHHHHHH-----------HHHhcCCCCEEE
Confidence 2 23698876 0 1112222 11 11567888 999999999998
Q ss_pred EEecCCCcccc
Q psy17793 234 YCTCSLSVEEN 244 (397)
Q Consensus 234 ysTCS~~~eEn 244 (397)
.....+...++
T Consensus 252 i~d~~~~~~~~ 262 (306)
T TIGR02716 252 ILDMVIDDPEN 262 (306)
T ss_pred EEEeccCCCCC
Confidence 88654444433
No 136
>PRK06922 hypothetical protein; Provisional
Probab=98.90 E-value=1.9e-08 Score=106.70 Aligned_cols=124 Identities=22% Similarity=0.262 Sum_probs=86.5
Q ss_pred ccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHh
Q psy17793 80 YLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERM 159 (397)
Q Consensus 80 ~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~ 159 (397)
+++..++.+|||+|||+|..+..++... +.+.|+|+|+|+.+++.+++++...+. ++.++++|+..+..
T Consensus 413 i~d~~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~-~ie~I~gDa~dLp~--------- 481 (677)
T PRK06922 413 ILDYIKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGR-SWNVIKGDAINLSS--------- 481 (677)
T ss_pred HhhhcCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCC-CeEEEEcchHhCcc---------
Confidence 4455578899999999999998888865 567999999999999999998876653 57888899876521
Q ss_pred hhcccCccEEEEcCCCCCCCCCccccccc-CccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793 160 KLQKESFDRILLDAPCSGFGQRPMFYNAN-SFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT 236 (397)
Q Consensus 160 ~~~~~~fD~Il~DpPCSg~G~~p~~~~~~-s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT 236 (397)
.+.+++||+|++.++- ..+ ++... .....-.....++|++ +.+.|||||+++...
T Consensus 482 ~fedeSFDvVVsn~vL----------H~L~syIp~-~g~~f~~edl~kiLre-----------I~RVLKPGGrLII~D 537 (677)
T PRK06922 482 SFEKESVDTIVYSSIL----------HELFSYIEY-EGKKFNHEVIKKGLQS-----------AYEVLKPGGRIIIRD 537 (677)
T ss_pred ccCCCCEEEEEEchHH----------Hhhhhhccc-ccccccHHHHHHHHHH-----------HHHHcCCCcEEEEEe
Confidence 1455789999985531 000 00000 0000000122677888 999999999999874
No 137
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.90 E-value=1.6e-08 Score=93.37 Aligned_cols=138 Identities=21% Similarity=0.278 Sum_probs=95.4
Q ss_pred CeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccCc
Q psy17793 87 QKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESF 166 (397)
Q Consensus 87 ~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~f 166 (397)
..+||+|||.|...+++|..- +...++|+|++..++..+.+.+.+.+++|+.++++|+..+... -+.++++
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~--------~~~~~~v 89 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRR--------LFPPGSV 89 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHH--------HSTTTSE
T ss_pred CeEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhh--------cccCCch
Confidence 389999999999999999985 5679999999999999999999999999999999999875421 1345789
Q ss_pred cEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCccccHH
Q psy17793 167 DRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEA 246 (397)
Q Consensus 167 D~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~eEnE~ 246 (397)
|.|.+.=| +|+.+.+.. ..++ .|..+|.. ..+.|++||.|.+.|-. ++--+
T Consensus 90 ~~i~i~FP------DPWpK~rH~----krRl-----~~~~fl~~-----------~~~~L~~gG~l~~~TD~---~~y~~ 140 (195)
T PF02390_consen 90 DRIYINFP------DPWPKKRHH----KRRL-----VNPEFLEL-----------LARVLKPGGELYFATDV---EEYAE 140 (195)
T ss_dssp EEEEEES-----------SGGGG----GGST-----TSHHHHHH-----------HHHHEEEEEEEEEEES----HHHHH
T ss_pred heEEEeCC------CCCcccchh----hhhc-----CCchHHHH-----------HHHHcCCCCEEEEEeCC---HHHHH
Confidence 99999777 344332222 1111 33667777 88899999999988644 22222
Q ss_pred HHHHHHHH-CCCcEEEe
Q psy17793 247 VIAWILHR-HPEVELVQ 262 (397)
Q Consensus 247 vV~~~L~~-~~~~~l~~ 262 (397)
.+...++. ++.++...
T Consensus 141 ~~~~~~~~~~~~f~~~~ 157 (195)
T PF02390_consen 141 WMLEQFEESHPGFENIE 157 (195)
T ss_dssp HHHHHHHHHSTTEEEE-
T ss_pred HHHHHHHhcCcCeEEcc
Confidence 23333444 56777764
No 138
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.89 E-value=2.9e-10 Score=92.57 Aligned_cols=99 Identities=21% Similarity=0.294 Sum_probs=61.9
Q ss_pred EEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccCccEE
Q psy17793 90 LDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRI 169 (397)
Q Consensus 90 LDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~I 169 (397)
||+|||+|..+..+++.. +..+++++|+|+.+++.+++++...+..+......+....... ...++||.|
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~fD~V 70 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDY---------DPPESFDLV 70 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---C---------CC----SEE
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhc---------cccccccee
Confidence 799999999999999976 5789999999999999999999998866655555554443211 122589999
Q ss_pred EEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEE
Q psy17793 170 LLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGIL 232 (397)
Q Consensus 170 l~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~l 232 (397)
++- ..+..+... ..+|++ +.++|||||.|
T Consensus 71 ~~~----------------------~vl~~l~~~-~~~l~~-----------~~~~L~pgG~l 99 (99)
T PF08242_consen 71 VAS----------------------NVLHHLEDI-EAVLRN-----------IYRLLKPGGIL 99 (99)
T ss_dssp EEE-----------------------TTS--S-H-HHHHHH-----------HTTT-TSS-EE
T ss_pred hhh----------------------hhHhhhhhH-HHHHHH-----------HHHHcCCCCCC
Confidence 971 111112222 577888 99999999986
No 139
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.89 E-value=2e-09 Score=105.88 Aligned_cols=167 Identities=14% Similarity=0.102 Sum_probs=101.8
Q ss_pred CCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHc------CCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793 64 SSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLM------NDTGTLIALDKSKPRVTKLEETIKKLQLSS 137 (397)
Q Consensus 64 ~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~------~~~~~V~avD~s~~rl~~l~~n~~~~g~~~ 137 (397)
.|.|+-...-+.+++.++.+.++++|+|.|||+|++.+.+...+ .....++|+|+++..+..++.|+...|+..
T Consensus 25 ~G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~ 104 (311)
T PF02384_consen 25 LGQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDN 104 (311)
T ss_dssp CGGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHC
T ss_pred cceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccc
Confidence 46677777778888899999999999999999999998887754 246789999999999999999887776543
Q ss_pred --EEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCC-Cccccc--ccCccchHHHHHHHHHHHHHHHHHHh
Q psy17793 138 --IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQ-RPMFYN--ANSFLNLDKKIKSYANIQKKLLQAVY 212 (397)
Q Consensus 138 --v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~-~p~~~~--~~s~~~~~~~~~~l~~~Q~~lL~~~~ 212 (397)
..+...|....... .....||.|++|||.+..+. .+.... ++........ ..+..++.+
T Consensus 105 ~~~~i~~~d~l~~~~~---------~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~Fi~~-- 168 (311)
T PF02384_consen 105 SNINIIQGDSLENDKF---------IKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKS-----NAEYAFIEH-- 168 (311)
T ss_dssp BGCEEEES-TTTSHSC---------TST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTT-----EHHHHHHHH--
T ss_pred cccccccccccccccc---------ccccccccccCCCCccccccccccccccccccccCCCcc-----chhhhhHHH--
Confidence 46778887654211 11468999999999887631 111111 1110000011 111336677
Q ss_pred hhhccccccccccccCCcEEEEEecC--CCccc-cHHHHHHHHHHC
Q psy17793 213 RFVSLFDWQGIPLLKKDGILVYCTCS--LSVEE-NEAVIAWILHRH 255 (397)
Q Consensus 213 ~f~~~~~~~a~~lLkpgG~lvysTCS--~~~eE-nE~vV~~~L~~~ 255 (397)
+++.||+||++++..=+ +.... ...+-+++++++
T Consensus 169 ---------~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~iR~~ll~~~ 205 (311)
T PF02384_consen 169 ---------ALSLLKPGGRAAIILPNGFLFSSSSEKKIRKYLLENG 205 (311)
T ss_dssp ---------HHHTEEEEEEEEEEEEHHHHHGSTHHHHHHHHHHHHE
T ss_pred ---------HHhhcccccceeEEecchhhhccchHHHHHHHHHhhc
Confidence 89999999997666432 22322 233445666664
No 140
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.89 E-value=1.6e-08 Score=79.95 Aligned_cols=103 Identities=22% Similarity=0.296 Sum_probs=79.4
Q ss_pred eEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccCcc
Q psy17793 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFD 167 (397)
Q Consensus 88 ~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD 167 (397)
+|+|+|||+|..+..++. ....+++++|.++..+..+++..+..+..++++...|...... ....+||
T Consensus 1 ~ildig~G~G~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~d 68 (107)
T cd02440 1 RVLDLGCGTGALALALAS--GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP----------EADESFD 68 (107)
T ss_pred CeEEEcCCccHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc----------ccCCceE
Confidence 489999999999988877 3567999999999999999875555555678898888876531 1346799
Q ss_pred EEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793 168 RILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC 235 (397)
Q Consensus 168 ~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys 235 (397)
+|+++++|... ......+++. +.+.|++||.++++
T Consensus 69 ~i~~~~~~~~~----------------------~~~~~~~l~~-----------~~~~l~~~g~~~~~ 103 (107)
T cd02440 69 VIISDPPLHHL----------------------VEDLARFLEE-----------ARRLLKPGGVLVLT 103 (107)
T ss_pred EEEEccceeeh----------------------hhHHHHHHHH-----------HHHHcCCCCEEEEE
Confidence 99999986431 1223566777 88889999999876
No 141
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.88 E-value=8.2e-09 Score=96.40 Aligned_cols=102 Identities=22% Similarity=0.310 Sum_probs=77.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhccc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE 164 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~ 164 (397)
.+.+|||+|||+|..+..++... ...+++++|+++.+++.+++++. .++.++..|+.... +..+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~-----------~~~~ 97 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLP-----------LEDS 97 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCC-----------CCCC
Confidence 34689999999999999999875 45679999999999998887654 36788888886552 3456
Q ss_pred CccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793 165 SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT 236 (397)
Q Consensus 165 ~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT 236 (397)
+||+|+++-. +...... .++|.+ +.++|||||.+++++
T Consensus 98 ~fD~vi~~~~----------------------l~~~~~~-~~~l~~-----------~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 98 SFDLIVSNLA----------------------LQWCDDL-SQALSE-----------LARVLKPGGLLAFST 135 (240)
T ss_pred ceeEEEEhhh----------------------hhhccCH-HHHHHH-----------HHHHcCCCcEEEEEe
Confidence 8999997332 1111111 457777 899999999999874
No 142
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.88 E-value=1e-08 Score=92.13 Aligned_cols=82 Identities=15% Similarity=0.227 Sum_probs=68.8
Q ss_pred HhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHH
Q psy17793 78 GHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIE 157 (397)
Q Consensus 78 ~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~ 157 (397)
+..+++.++++|||+|||+|..|..+++. ..+|+|+|+|+.+++.+++++.. ..+++++.+|+.++.
T Consensus 6 ~~~~~~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~-------- 72 (169)
T smart00650 6 VRAANLRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFD-------- 72 (169)
T ss_pred HHhcCCCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCC--------
Confidence 44566788899999999999999999885 46899999999999999998865 357999999998763
Q ss_pred HhhhcccCccEEEEcCCC
Q psy17793 158 RMKLQKESFDRILLDAPC 175 (397)
Q Consensus 158 ~~~~~~~~fD~Il~DpPC 175 (397)
+....||.|+.|+|+
T Consensus 73 ---~~~~~~d~vi~n~Py 87 (169)
T smart00650 73 ---LPKLQPYKVVGNLPY 87 (169)
T ss_pred ---ccccCCCEEEECCCc
Confidence 233469999999994
No 143
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.87 E-value=1.7e-09 Score=100.52 Aligned_cols=115 Identities=23% Similarity=0.325 Sum_probs=84.5
Q ss_pred hccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC--cEEEEEcccccccccchhhH
Q psy17793 79 HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS--SIQTHVYDSTRINTSSQIDI 156 (397)
Q Consensus 79 ~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~--~v~~~~~D~~~~~~~~~~d~ 156 (397)
....++.|++|||.|.|-|..++..++. +..+|+.+|+|+.-++.++-|=-.-++. .|+++.+|+.....+
T Consensus 128 ~~V~~~~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~----- 200 (287)
T COG2521 128 ELVKVKRGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKD----- 200 (287)
T ss_pred heeccccCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhc-----
Confidence 4556788999999999999999877763 5559999999999998876554322322 479999999877533
Q ss_pred HHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793 157 ERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC 235 (397)
Q Consensus 157 ~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys 235 (397)
+.+++||.|+-|||-. | +...+ ++ .++-++ ..++||+||+++--
T Consensus 201 ----~~D~sfDaIiHDPPRf------------S---~AgeL--Ys---eefY~E-----------l~RiLkrgGrlFHY 244 (287)
T COG2521 201 ----FDDESFDAIIHDPPRF------------S---LAGEL--YS---EEFYRE-----------LYRILKRGGRLFHY 244 (287)
T ss_pred ----CCccccceEeeCCCcc------------c---hhhhH--hH---HHHHHH-----------HHHHcCcCCcEEEE
Confidence 6778999999999921 1 11222 11 455566 78899999998643
No 144
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.85 E-value=2.1e-08 Score=97.02 Aligned_cols=113 Identities=17% Similarity=0.235 Sum_probs=81.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEEcccccccccchhhHHHhh
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ----LSSIQTHVYDSTRINTSSQIDIERMK 160 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g----~~~v~~~~~D~~~~~~~~~~d~~~~~ 160 (397)
..++||++|+|.|+.+..++... ...+|+++|+|+..++.+++++...+ -.++++...|+......
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~--------- 141 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLAD--------- 141 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHh---------
Confidence 34599999999999888777643 35689999999999999999886653 24588888888765321
Q ss_pred hcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793 161 LQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS 238 (397)
Q Consensus 161 ~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS 238 (397)
..++||+|++|++-. .+. ...+ ...+.++. +.++|+|||+++..+++
T Consensus 142 -~~~~yDvIi~D~~~~-~~~-------------~~~l-----~~~ef~~~-----------~~~~L~pgG~lv~~~~~ 188 (270)
T TIGR00417 142 -TENTFDVIIVDSTDP-VGP-------------AETL-----FTKEFYEL-----------LKKALNEDGIFVAQSES 188 (270)
T ss_pred -CCCCccEEEEeCCCC-CCc-------------ccch-----hHHHHHHH-----------HHHHhCCCcEEEEcCCC
Confidence 246899999998621 110 0111 11455666 88899999999998665
No 145
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.85 E-value=1.3e-08 Score=93.16 Aligned_cols=121 Identities=17% Similarity=0.141 Sum_probs=82.8
Q ss_pred EEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEccccc
Q psy17793 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147 (397)
Q Consensus 68 ~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~ 147 (397)
|=|.+-.+++...|.-..-.++||+|||.|..|.+||.+. .+++|+|+++.+++.+++++.. ..+|++...|...
T Consensus 26 YE~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~--~~~V~~~~~dvp~ 100 (201)
T PF05401_consen 26 YERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAG--LPHVEWIQADVPE 100 (201)
T ss_dssp HHHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT---SSEEEEES-TTT
T ss_pred HHHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCC--CCCeEEEECcCCC
Confidence 3454444444445655566799999999999999999863 6899999999999999999874 4789999999976
Q ss_pred ccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhcccccccccccc
Q psy17793 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLK 227 (397)
Q Consensus 148 ~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLk 227 (397)
. .+.+.||+|++ .++.+-++ -...+ +.+++. ....|+
T Consensus 101 ~------------~P~~~FDLIV~----------SEVlYYL~---~~~~L-------~~~l~~-----------l~~~L~ 137 (201)
T PF05401_consen 101 F------------WPEGRFDLIVL----------SEVLYYLD---DAEDL-------RAALDR-----------LVAALA 137 (201)
T ss_dssp ---------------SS-EEEEEE----------ES-GGGSS---SHHHH-------HHHHHH-----------HHHTEE
T ss_pred C------------CCCCCeeEEEE----------ehHhHcCC---CHHHH-------HHHHHH-----------HHHHhC
Confidence 5 35689999997 22333332 01222 445666 788999
Q ss_pred CCcEEEEEe
Q psy17793 228 KDGILVYCT 236 (397)
Q Consensus 228 pgG~lvysT 236 (397)
|||.||..+
T Consensus 138 pgG~LV~g~ 146 (201)
T PF05401_consen 138 PGGHLVFGH 146 (201)
T ss_dssp EEEEEEEEE
T ss_pred CCCEEEEEE
Confidence 999999975
No 146
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.83 E-value=8e-09 Score=93.64 Aligned_cols=136 Identities=26% Similarity=0.259 Sum_probs=77.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhh--
Q psy17793 84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKL-- 161 (397)
Q Consensus 84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~-- 161 (397)
..+.+|||+||||||+|..++...+..++|+|+|+.+. ....++..+.+|.+...... ... ...
T Consensus 22 ~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~~~~i~~d~~~~~~~~--~i~-~~~~~ 87 (181)
T PF01728_consen 22 GKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQNVSFIQGDITNPENIK--DIR-KLLPE 87 (181)
T ss_dssp TTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TTEEBTTGGGEEEEHSH--HGG-GSHGT
T ss_pred ccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccceeeeecccchhhHHH--hhh-hhccc
Confidence 34589999999999999999887655789999999876 23356777778876542110 000 001
Q ss_pred cccCccEEEEcC--CCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCC
Q psy17793 162 QKESFDRILLDA--PCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSL 239 (397)
Q Consensus 162 ~~~~fD~Il~Dp--PCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~ 239 (397)
..+.||+|++|. +|+|.. . ... ..+.+++..++.+ |.++||+||.+|.-+-.
T Consensus 88 ~~~~~dlv~~D~~~~~~g~~---------~----~d~-----~~~~~l~~~~l~~-------a~~~L~~gG~~v~K~~~- 141 (181)
T PF01728_consen 88 SGEKFDLVLSDMAPNVSGDR---------N----IDE-----FISIRLILSQLLL-------ALELLKPGGTFVIKVFK- 141 (181)
T ss_dssp TTCSESEEEE-------SSH---------H----SSH-----HHHHHHHHHHHHH-------HHHHHCTTEEEEEEESS-
T ss_pred cccCcceeccccccCCCCch---------h----hHH-----HHHHHHHHHHHHH-------HHhhhcCCCEEEEEecc-
Confidence 125899999998 444320 0 011 1112223332332 88899999999887443
Q ss_pred CccccHHHHHHHHHHCCCcEE
Q psy17793 240 SVEENEAVIAWILHRHPEVEL 260 (397)
Q Consensus 240 ~~eEnE~vV~~~L~~~~~~~l 260 (397)
..+.++++..+-..+..+.+
T Consensus 142 -~~~~~~~~~~l~~~F~~v~~ 161 (181)
T PF01728_consen 142 -GPEIEELIYLLKRCFSKVKI 161 (181)
T ss_dssp -STTSHHHHHHHHHHHHHEEE
T ss_pred -CccHHHHHHHHHhCCeEEEE
Confidence 33334555544444333333
No 147
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.82 E-value=3.7e-08 Score=91.83 Aligned_cols=108 Identities=22% Similarity=0.270 Sum_probs=82.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793 84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK 163 (397)
Q Consensus 84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~ 163 (397)
..+.+|||+|||+|..+..++.. ...++++|.++.+++.+++++...+..++.+...|+...... ..
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~----------~~ 110 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEK----------GA 110 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcC----------CC
Confidence 34789999999999999888774 356999999999999999999988876788888887655311 23
Q ss_pred cCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793 164 ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS 238 (397)
Q Consensus 164 ~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS 238 (397)
++||+|++. ..+...... ..+|+. +.++|++||.++.+++.
T Consensus 111 ~~~D~i~~~----------------------~~l~~~~~~-~~~l~~-----------~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 111 KSFDVVTCM----------------------EVLEHVPDP-QAFIRA-----------CAQLLKPGGILFFSTIN 151 (224)
T ss_pred CCccEEEeh----------------------hHHHhCCCH-HHHHHH-----------HHHhcCCCcEEEEEecC
Confidence 689999972 122222222 467777 88999999999988764
No 148
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.82 E-value=7.1e-08 Score=95.40 Aligned_cols=87 Identities=18% Similarity=0.208 Sum_probs=65.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh-CCCc-EEEEE-cccccccccchhhHHHhhh
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKL-QLSS-IQTHV-YDSTRINTSSQIDIERMKL 161 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~-g~~~-v~~~~-~D~~~~~~~~~~d~~~~~~ 161 (397)
.+.++||+|||+|.....++... .+.+++|+|+|+.+++.+++|++++ ++.+ |++.. .|...+... ...
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~-------i~~ 185 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKG-------IIH 185 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhc-------ccc
Confidence 46799999999999998888765 3579999999999999999999999 7864 77654 333332110 001
Q ss_pred cccCccEEEEcCCCCCCC
Q psy17793 162 QKESFDRILLDAPCSGFG 179 (397)
Q Consensus 162 ~~~~fD~Il~DpPCSg~G 179 (397)
..+.||.|++|||+-.++
T Consensus 186 ~~~~fDlivcNPPf~~s~ 203 (321)
T PRK11727 186 KNERFDATLCNPPFHASA 203 (321)
T ss_pred cCCceEEEEeCCCCcCcc
Confidence 246899999999986654
No 149
>KOG1663|consensus
Probab=98.81 E-value=4.3e-08 Score=91.26 Aligned_cols=127 Identities=13% Similarity=0.148 Sum_probs=100.6
Q ss_pred EEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccc
Q psy17793 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDST 146 (397)
Q Consensus 68 ~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~ 146 (397)
.+-+...++...++..-...++||+|..+|.-++..|..+..+|+|+++|+++...+...+..++.|+.. |.++.+++.
T Consensus 56 ~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~ 135 (237)
T KOG1663|consen 56 LVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPAL 135 (237)
T ss_pred ecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchh
Confidence 3445566777777777777899999999999999999999999999999999999999999999999865 999999987
Q ss_pred cccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccc
Q psy17793 147 RINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLL 226 (397)
Q Consensus 147 ~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lL 226 (397)
..+... ......+.||.+++|+- +.... ...++ ++++|
T Consensus 136 esLd~l-----~~~~~~~tfDfaFvDad-------------------K~nY~-------~y~e~-----------~l~Ll 173 (237)
T KOG1663|consen 136 ESLDEL-----LADGESGTFDFAFVDAD-------------------KDNYS-------NYYER-----------LLRLL 173 (237)
T ss_pred hhHHHH-----HhcCCCCceeEEEEccc-------------------hHHHH-------HHHHH-----------HHhhc
Confidence 664221 12235578999999884 12221 33455 88999
Q ss_pred cCCcEEEEEe
Q psy17793 227 KKDGILVYCT 236 (397)
Q Consensus 227 kpgG~lvysT 236 (397)
|+||.|++-.
T Consensus 174 r~GGvi~~DN 183 (237)
T KOG1663|consen 174 RVGGVIVVDN 183 (237)
T ss_pred ccccEEEEec
Confidence 9999999964
No 150
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.81 E-value=1.1e-07 Score=93.20 Aligned_cols=92 Identities=17% Similarity=0.209 Sum_probs=75.0
Q ss_pred hccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHH
Q psy17793 79 HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIER 158 (397)
Q Consensus 79 ~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~ 158 (397)
.+|.+++|+.++|+.+|-||.|..++..+++ ++|+|+|.|+.+++.++++++.++ .++.++.+++.++... .
T Consensus 14 ~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l~~~------l 85 (305)
T TIGR00006 14 EGLNIKPDGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANFFEH------L 85 (305)
T ss_pred HhcCcCCCCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHHHHH------H
Confidence 4567889999999999999999999998754 999999999999999999998764 5689999988776311 0
Q ss_pred hhhcccCccEEEEcCCCCCC
Q psy17793 159 MKLQKESFDRILLDAPCSGF 178 (397)
Q Consensus 159 ~~~~~~~fD~Il~DpPCSg~ 178 (397)
......++|.|++|-=+|+.
T Consensus 86 ~~~~~~~vDgIl~DLGvSS~ 105 (305)
T TIGR00006 86 DELLVTKIDGILVDLGVSSP 105 (305)
T ss_pred HhcCCCcccEEEEeccCCHh
Confidence 11122579999999999885
No 151
>KOG1271|consensus
Probab=98.80 E-value=1.9e-08 Score=90.38 Aligned_cols=118 Identities=24% Similarity=0.270 Sum_probs=85.1
Q ss_pred CeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccchhhHHHhhhcccC
Q psy17793 87 QKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKES 165 (397)
Q Consensus 87 ~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~~~~~ 165 (397)
++|||+|||.|.....|+.. +=.+.++++|.|+.+++.++..+++.+++| |++...|.+... +..+.
T Consensus 69 ~~VlDLGtGNG~~L~~L~~e-gf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~-----------~~~~q 136 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKE-GFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPD-----------FLSGQ 136 (227)
T ss_pred cceeeccCCchHHHHHHHHh-cCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCc-----------ccccc
Confidence 49999999999999999885 234669999999999999999999999998 999999987641 45567
Q ss_pred ccEEEE----cCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCc
Q psy17793 166 FDRILL----DAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSV 241 (397)
Q Consensus 166 fD~Il~----DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~ 241 (397)
||+|+= ||= +..|+.. ..++.- -+.. .-++|+|||++|+.+|-+..
T Consensus 137 fdlvlDKGT~DAi----sLs~d~~--------~~r~~~-------Y~d~-----------v~~ll~~~gifvItSCN~T~ 186 (227)
T KOG1271|consen 137 FDLVLDKGTLDAI----SLSPDGP--------VGRLVV-------YLDS-----------VEKLLSPGGIFVITSCNFTK 186 (227)
T ss_pred eeEEeecCceeee----ecCCCCc--------ccceee-------ehhh-----------HhhccCCCcEEEEEecCccH
Confidence 888762 221 0111110 111111 1222 66789999999999998876
Q ss_pred cccHH
Q psy17793 242 EENEA 246 (397)
Q Consensus 242 eEnE~ 246 (397)
.|-.+
T Consensus 187 dELv~ 191 (227)
T KOG1271|consen 187 DELVE 191 (227)
T ss_pred HHHHH
Confidence 65443
No 152
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.79 E-value=8.1e-08 Score=89.67 Aligned_cols=72 Identities=19% Similarity=0.215 Sum_probs=61.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEEcccccccccchhhHHHhhh
Q psy17793 83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL-SSIQTHVYDSTRINTSSQIDIERMKL 161 (397)
Q Consensus 83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~-~~v~~~~~D~~~~~~~~~~d~~~~~~ 161 (397)
..++.+|||+|||+|..+..++.. ..+|+|+|+|+.+++.+++++...+. .++.+...|+...
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~------------- 116 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL------------- 116 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC-------------
Confidence 456889999999999999999874 45899999999999999999988876 4688988887654
Q ss_pred cccCccEEEE
Q psy17793 162 QKESFDRILL 171 (397)
Q Consensus 162 ~~~~fD~Il~ 171 (397)
. ++||+|++
T Consensus 117 ~-~~fD~ii~ 125 (219)
T TIGR02021 117 C-GEFDIVVC 125 (219)
T ss_pred C-CCcCEEEE
Confidence 2 57999986
No 153
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.76 E-value=3.1e-08 Score=93.41 Aligned_cols=115 Identities=23% Similarity=0.329 Sum_probs=93.1
Q ss_pred CeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc-cC
Q psy17793 87 QKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK-ES 165 (397)
Q Consensus 87 ~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~-~~ 165 (397)
..+||+|||.|...+++|.. ++..-++|+|+....+..+.+.+.+.+++|+.+++.|+..+... +.+ ++
T Consensus 50 pi~lEIGfG~G~~l~~~A~~-nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~---------~~~~~s 119 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKK-NPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDY---------LIPDGS 119 (227)
T ss_pred cEEEEECCCCCHHHHHHHHH-CCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHh---------cCCCCC
Confidence 48999999999999999997 46678999999999999999999999999999999999887532 333 48
Q ss_pred ccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEec
Q psy17793 166 FDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC 237 (397)
Q Consensus 166 fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTC 237 (397)
.|.|.++=| +|+...+-. +.++ .|..+|+. ..+.||+||.|.+.|-
T Consensus 120 l~~I~i~FP------DPWpKkRH~----KRRl-----~~~~fl~~-----------~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 120 LDKIYINFP------DPWPKKRHH----KRRL-----TQPEFLKL-----------YARKLKPGGVLHFATD 165 (227)
T ss_pred eeEEEEECC------CCCCCcccc----cccc-----CCHHHHHH-----------HHHHccCCCEEEEEec
Confidence 999999877 355443322 1222 45777777 8899999999999854
No 154
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.75 E-value=4.1e-08 Score=96.16 Aligned_cols=98 Identities=18% Similarity=0.220 Sum_probs=78.3
Q ss_pred CcEEEech-hHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEE
Q psy17793 65 SMGILQNL-PSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ-LSSIQTHV 142 (397)
Q Consensus 65 g~~~~Qd~-~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g-~~~v~~~~ 142 (397)
|..++.|+ ....++..+.+.+++.|||+|||+|..|..++.. ..+|+|+|+|+.+++.++++++..+ ..+++++.
T Consensus 15 GQnFL~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~ 91 (294)
T PTZ00338 15 GQHILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIE 91 (294)
T ss_pred CccccCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 33344443 3345566677889999999999999999999885 4689999999999999999998877 46799999
Q ss_pred cccccccccchhhHHHhhhcccCccEEEEcCCCCCC
Q psy17793 143 YDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGF 178 (397)
Q Consensus 143 ~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~ 178 (397)
+|+.... + ..||.|+.|+|+.-+
T Consensus 92 ~Dal~~~-----------~--~~~d~VvaNlPY~Is 114 (294)
T PTZ00338 92 GDALKTE-----------F--PYFDVCVANVPYQIS 114 (294)
T ss_pred CCHhhhc-----------c--cccCEEEecCCcccC
Confidence 9997652 1 368999999998654
No 155
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.74 E-value=1e-07 Score=99.21 Aligned_cols=119 Identities=22% Similarity=0.212 Sum_probs=83.6
Q ss_pred HHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchh
Q psy17793 75 ILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQI 154 (397)
Q Consensus 75 ~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~ 154 (397)
..+...+...++.+|||+|||+|..+..++.. ..+|+|+|+++.+++.+++... ...++.+++.|+....
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~---~~~v~giD~s~~~l~~a~~~~~--~~~~i~~~~~d~~~~~----- 96 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKK---AGQVIALDFIESVIKKNESING--HYKNVKFMCADVTSPD----- 96 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHhc--cCCceEEEEecccccc-----
Confidence 44445666667889999999999999999985 3589999999999987654211 2357899999986431
Q ss_pred hHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEE
Q psy17793 155 DIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVY 234 (397)
Q Consensus 155 d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvy 234 (397)
.+++.++||+|+++.++. ... ... ..++|.+ +.++|||||++++
T Consensus 97 ----~~~~~~~fD~I~~~~~l~----------~l~----~~~-------~~~~l~~-----------~~r~Lk~gG~l~~ 140 (475)
T PLN02336 97 ----LNISDGSVDLIFSNWLLM----------YLS----DKE-------VENLAER-----------MVKWLKVGGYIFF 140 (475)
T ss_pred ----cCCCCCCEEEEehhhhHH----------hCC----HHH-------HHHHHHH-----------HHHhcCCCeEEEE
Confidence 124557899999854410 001 111 1567777 8899999999988
Q ss_pred EecCC
Q psy17793 235 CTCSL 239 (397)
Q Consensus 235 sTCS~ 239 (397)
...++
T Consensus 141 ~d~~~ 145 (475)
T PLN02336 141 RESCF 145 (475)
T ss_pred EeccC
Confidence 64333
No 156
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.73 E-value=5.5e-08 Score=93.91 Aligned_cols=109 Identities=17% Similarity=0.132 Sum_probs=75.8
Q ss_pred CCCCeEEEEcCCCCh----HHHHHHHHcCC----CcEEEEEeCCHHHHHHHHHHHHH----hC-----------------
Q psy17793 84 QPGQKVLDMCAAPGN----KLTHIALLMND----TGTLIALDKSKPRVTKLEETIKK----LQ----------------- 134 (397)
Q Consensus 84 ~~g~~VLDlcagpG~----kt~~lA~~~~~----~~~V~avD~s~~rl~~l~~n~~~----~g----------------- 134 (397)
.++.+|||+|||+|. .+..+++.... ..+|+|+|+|+.+++.+++.+-. .+
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 345699999999996 44455554332 46899999999999999875410 01
Q ss_pred -----C-CcEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHH-HHHHHH
Q psy17793 135 -----L-SSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYA-NIQKKL 207 (397)
Q Consensus 135 -----~-~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~-~~Q~~l 207 (397)
+ .+|++...|+.... ...++||+|+| ...+..+. +.+.++
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~-----------~~~~~fD~I~c----------------------rnvl~yf~~~~~~~~ 224 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAES-----------PPLGDFDLIFC----------------------RNVLIYFDEPTQRKL 224 (264)
T ss_pred EEChHHhCcCEEeeccCCCCC-----------CccCCCCEEEe----------------------chhHHhCCHHHHHHH
Confidence 1 24777888876642 23568999997 12222222 345688
Q ss_pred HHHHhhhhccccccccccccCCcEEEEEe
Q psy17793 208 LQAVYRFVSLFDWQGIPLLKKDGILVYCT 236 (397)
Q Consensus 208 L~~~~~f~~~~~~~a~~lLkpgG~lvysT 236 (397)
+++ ..+.|+|||.|+...
T Consensus 225 l~~-----------l~~~L~pGG~L~lg~ 242 (264)
T smart00138 225 LNR-----------FAEALKPGGYLFLGH 242 (264)
T ss_pred HHH-----------HHHHhCCCeEEEEEC
Confidence 888 999999999999873
No 157
>KOG2915|consensus
Probab=98.73 E-value=2.4e-07 Score=88.13 Aligned_cols=99 Identities=19% Similarity=0.267 Sum_probs=82.5
Q ss_pred CcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEc
Q psy17793 65 SMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVY 143 (397)
Q Consensus 65 g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~ 143 (397)
...|.-| ..++...|++.||.+|++.|+|+|+.+..+|..+++.|+++.+|....|.+.+.+..++.|+. |+.+..-
T Consensus 87 QI~Yt~D--ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hr 164 (314)
T KOG2915|consen 87 QILYTPD--IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHR 164 (314)
T ss_pred eEEeccc--HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEe
Confidence 3344444 445667899999999999999999999999999999999999999999999999999999985 5888888
Q ss_pred ccccccccchhhHHHhhhcccCccEEEEcCC
Q psy17793 144 DSTRINTSSQIDIERMKLQKESFDRILLDAP 174 (397)
Q Consensus 144 D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpP 174 (397)
|....... .....+|.|++|-|
T Consensus 165 DVc~~GF~---------~ks~~aDaVFLDlP 186 (314)
T KOG2915|consen 165 DVCGSGFL---------IKSLKADAVFLDLP 186 (314)
T ss_pred ecccCCcc---------ccccccceEEEcCC
Confidence 87654211 12468999999998
No 158
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.71 E-value=6.4e-08 Score=93.63 Aligned_cols=72 Identities=21% Similarity=0.266 Sum_probs=57.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHcCCC--cEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhh
Q psy17793 84 QPGQKVLDMCAAPGNKLTHIALLMNDT--GTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKL 161 (397)
Q Consensus 84 ~~g~~VLDlcagpG~kt~~lA~~~~~~--~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~ 161 (397)
..+.+|||+|||+|..+..++...... ..|+|+|+|+.+++.++++ ..++.+..+|+..+. +
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~-----~~~~~~~~~d~~~lp-----------~ 147 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR-----YPQVTFCVASSHRLP-----------F 147 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh-----CCCCeEEEeecccCC-----------C
Confidence 455789999999999999998875432 4799999999999998764 246788888887652 4
Q ss_pred cccCccEEEE
Q psy17793 162 QKESFDRILL 171 (397)
Q Consensus 162 ~~~~fD~Il~ 171 (397)
..++||.|+.
T Consensus 148 ~~~sfD~I~~ 157 (272)
T PRK11088 148 ADQSLDAIIR 157 (272)
T ss_pred cCCceeEEEE
Confidence 5678999985
No 159
>PRK03612 spermidine synthase; Provisional
Probab=98.71 E-value=1.6e-07 Score=99.06 Aligned_cols=116 Identities=19% Similarity=0.230 Sum_probs=82.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHH--HHHhC---C--CcEEEEEcccccccccchhhH
Q psy17793 84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEET--IKKLQ---L--SSIQTHVYDSTRINTSSQIDI 156 (397)
Q Consensus 84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n--~~~~g---~--~~v~~~~~D~~~~~~~~~~d~ 156 (397)
.+.++|||+|+|.|..+..+++. +...+|+++|+|++.++.++++ +...+ . ++++++.+|+.+....
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~----- 369 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK----- 369 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHh-----
Confidence 45679999999999999888763 2236999999999999999984 33221 2 4699999999876421
Q ss_pred HHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793 157 ERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT 236 (397)
Q Consensus 157 ~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT 236 (397)
..++||+|++|+|-.. .| . ...+ ...++++. +.+.|||||.++..+
T Consensus 370 -----~~~~fDvIi~D~~~~~---~~------------~-~~~L--~t~ef~~~-----------~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 370 -----LAEKFDVIIVDLPDPS---NP------------A-LGKL--YSVEFYRL-----------LKRRLAPDGLLVVQS 415 (521)
T ss_pred -----CCCCCCEEEEeCCCCC---Cc------------c-hhcc--chHHHHHH-----------HHHhcCCCeEEEEec
Confidence 2468999999987211 00 0 0001 11456666 888999999999887
Q ss_pred cCC
Q psy17793 237 CSL 239 (397)
Q Consensus 237 CS~ 239 (397)
++.
T Consensus 416 ~~~ 418 (521)
T PRK03612 416 TSP 418 (521)
T ss_pred CCc
Confidence 653
No 160
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.70 E-value=1.2e-07 Score=88.84 Aligned_cols=111 Identities=13% Similarity=0.147 Sum_probs=73.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHH------------HhCCCcEEEEEccccccccc
Q psy17793 84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIK------------KLQLSSIQTHVYDSTRINTS 151 (397)
Q Consensus 84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~------------~~g~~~v~~~~~D~~~~~~~ 151 (397)
.++.+|||+|||.|.-+..+|+. +-.|+|+|+|+.+++.+.+... +..-.+|++.++|+..+...
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~ 109 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA 109 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc
Confidence 46789999999999999999983 5689999999999997633110 00113588899999876311
Q ss_pred chhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcE
Q psy17793 152 SQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGI 231 (397)
Q Consensus 152 ~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~ 231 (397)
..+.||.|+--.- +.+++. ....+.+.. ..++|||||+
T Consensus 110 ----------~~~~fD~i~D~~~---------------~~~l~~------~~R~~~~~~-----------l~~lLkpgG~ 147 (213)
T TIGR03840 110 ----------DLGPVDAVYDRAA---------------LIALPE------EMRQRYAAH-----------LLALLPPGAR 147 (213)
T ss_pred ----------cCCCcCEEEechh---------------hccCCH------HHHHHHHHH-----------HHHHcCCCCe
Confidence 1246888874110 000101 111345666 8889999999
Q ss_pred EEEEecCC
Q psy17793 232 LVYCTCSL 239 (397)
Q Consensus 232 lvysTCS~ 239 (397)
+++.|-+.
T Consensus 148 ~ll~~~~~ 155 (213)
T TIGR03840 148 QLLITLDY 155 (213)
T ss_pred EEEEEEEc
Confidence 88876553
No 161
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.70 E-value=3.7e-08 Score=86.26 Aligned_cols=107 Identities=23% Similarity=0.327 Sum_probs=72.9
Q ss_pred HHHHHhccC-CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc
Q psy17793 74 SILAGHYLD-VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS 152 (397)
Q Consensus 74 S~l~~~~L~-~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~ 152 (397)
+.++..++. ..++.+|||+|||.|..+..++.. +.+++++|+++.+++. .++.....+....
T Consensus 10 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~----------~~~~~~~~~~~~~---- 72 (161)
T PF13489_consen 10 ADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK----------RNVVFDNFDAQDP---- 72 (161)
T ss_dssp HHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH----------TTSEEEEEECHTH----
T ss_pred HHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh----------hhhhhhhhhhhhh----
Confidence 334444553 467889999999999999988774 3499999999999888 2233333332221
Q ss_pred hhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEE
Q psy17793 153 QIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGIL 232 (397)
Q Consensus 153 ~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~l 232 (397)
....++||.|++.- .+..+.+. ..+|++ ..++|||||.+
T Consensus 73 -------~~~~~~fD~i~~~~----------------------~l~~~~d~-~~~l~~-----------l~~~LkpgG~l 111 (161)
T PF13489_consen 73 -------PFPDGSFDLIICND----------------------VLEHLPDP-EEFLKE-----------LSRLLKPGGYL 111 (161)
T ss_dssp -------HCHSSSEEEEEEES----------------------SGGGSSHH-HHHHHH-----------HHHCEEEEEEE
T ss_pred -------hccccchhhHhhHH----------------------HHhhcccH-HHHHHH-----------HHHhcCCCCEE
Confidence 23557899999821 11111122 567788 89999999999
Q ss_pred EEEecC
Q psy17793 233 VYCTCS 238 (397)
Q Consensus 233 vysTCS 238 (397)
+.++=.
T Consensus 112 ~~~~~~ 117 (161)
T PF13489_consen 112 VISDPN 117 (161)
T ss_dssp EEEEEB
T ss_pred EEEEcC
Confidence 998643
No 162
>KOG2187|consensus
Probab=98.70 E-value=2.5e-08 Score=102.00 Aligned_cols=100 Identities=19% Similarity=0.217 Sum_probs=75.6
Q ss_pred EechhHHH------HHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEE
Q psy17793 69 LQNLPSIL------AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHV 142 (397)
Q Consensus 69 ~Qd~~S~l------~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~ 142 (397)
.|.-++.+ +.+.+....+..++|+|||+|.+++.+|. +..+|+++|++++.++.|+.|++.+|++|.++++
T Consensus 361 FQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~---~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~ 437 (534)
T KOG2187|consen 361 FQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALAR---GVKRVIGVEISPDAVEDAEKNAQINGISNATFIV 437 (534)
T ss_pred hccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhc---cccceeeeecChhhcchhhhcchhcCccceeeee
Confidence 46555443 55567788889999999999999998888 4579999999999999999999999999999999
Q ss_pred cccccccccchhhHHHhhhcccCcc-EEEEcCCCCC
Q psy17793 143 YDSTRINTSSQIDIERMKLQKESFD-RILLDAPCSG 177 (397)
Q Consensus 143 ~D~~~~~~~~~~d~~~~~~~~~~fD-~Il~DpPCSg 177 (397)
+-+.++.... ..+.+ .+=+ ++++|||-.|
T Consensus 438 gqaE~~~~sl----~~~~~--~~~~~v~iiDPpR~G 467 (534)
T KOG2187|consen 438 GQAEDLFPSL----LTPCC--DSETLVAIIDPPRKG 467 (534)
T ss_pred cchhhccchh----cccCC--CCCceEEEECCCccc
Confidence 9665543210 00001 1335 8899999433
No 163
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.70 E-value=2.7e-07 Score=85.75 Aligned_cols=72 Identities=15% Similarity=0.174 Sum_probs=57.8
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhh
Q psy17793 82 DVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKL 161 (397)
Q Consensus 82 ~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~ 161 (397)
...++.+|||+|||+|..+..++... +...++|+|+|+.+++.+++++ .++.+..+|+... +
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~~------------~ 101 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFDP------------F 101 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccCC------------C
Confidence 34567899999999999999998865 4578999999999999998764 3456777776552 3
Q ss_pred cccCccEEEE
Q psy17793 162 QKESFDRILL 171 (397)
Q Consensus 162 ~~~~fD~Il~ 171 (397)
..++||+|++
T Consensus 102 ~~~sfD~V~~ 111 (204)
T TIGR03587 102 KDNFFDLVLT 111 (204)
T ss_pred CCCCEEEEEE
Confidence 5578999997
No 164
>PRK10742 putative methyltransferase; Provisional
Probab=98.68 E-value=1.1e-07 Score=90.16 Aligned_cols=89 Identities=13% Similarity=0.072 Sum_probs=74.6
Q ss_pred HHHHhccCCCCCC--eEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh------CC---CcEEEEEc
Q psy17793 75 ILAGHYLDVQPGQ--KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKL------QL---SSIQTHVY 143 (397)
Q Consensus 75 ~l~~~~L~~~~g~--~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~------g~---~~v~~~~~ 143 (397)
..++.++.+++|. +|||++||.|.-+..+|.+ ++.|+++|.++.....+++++++. +. .+++++..
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~ 152 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA 152 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC
Confidence 5667888888988 9999999999999999986 457999999999999999999996 32 56899999
Q ss_pred ccccccccchhhHHHhhhcccCccEEEEcCCCC
Q psy17793 144 DSTRINTSSQIDIERMKLQKESFDRILLDAPCS 176 (397)
Q Consensus 144 D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCS 176 (397)
|+..++.. ....||+|.+|||+-
T Consensus 153 da~~~L~~----------~~~~fDVVYlDPMfp 175 (250)
T PRK10742 153 SSLTALTD----------ITPRPQVVYLDPMFP 175 (250)
T ss_pred cHHHHHhh----------CCCCCcEEEECCCCC
Confidence 98877522 234799999999953
No 165
>PLN02366 spermidine synthase
Probab=98.67 E-value=2e-07 Score=91.94 Aligned_cols=112 Identities=17% Similarity=0.283 Sum_probs=82.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC--C--CcEEEEEcccccccccchhhHHHh
Q psy17793 84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ--L--SSIQTHVYDSTRINTSSQIDIERM 159 (397)
Q Consensus 84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g--~--~~v~~~~~D~~~~~~~~~~d~~~~ 159 (397)
...++||++|+|.|+.+..+++. .+..+|+.+|+|+..++.+++.+...+ + ++++++.+|+......
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~-------- 160 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKN-------- 160 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhh--------
Confidence 44679999999999999888775 334689999999999999999887642 2 3599999999876421
Q ss_pred hhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793 160 KLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC 235 (397)
Q Consensus 160 ~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys 235 (397)
...++||+|++|.+-. .| | ...+ ...++++. +.+.|+|||.++.-
T Consensus 161 -~~~~~yDvIi~D~~dp-~~--~-----------~~~L-----~t~ef~~~-----------~~~~L~pgGvlv~q 205 (308)
T PLN02366 161 -APEGTYDAIIVDSSDP-VG--P-----------AQEL-----FEKPFFES-----------VARALRPGGVVCTQ 205 (308)
T ss_pred -ccCCCCCEEEEcCCCC-CC--c-----------hhhh-----hHHHHHHH-----------HHHhcCCCcEEEEC
Confidence 1245799999997611 00 0 0111 12566777 88999999999764
No 166
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.67 E-value=1e-07 Score=91.56 Aligned_cols=85 Identities=14% Similarity=0.214 Sum_probs=70.9
Q ss_pred HHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccch
Q psy17793 74 SILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQ 153 (397)
Q Consensus 74 S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~ 153 (397)
...++..++..++++|||+|||+|..|..++.. ..+|+|+|+|+.+++.+++++.. ..+++++++|+..+.
T Consensus 18 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~---- 88 (258)
T PRK14896 18 VDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVD---- 88 (258)
T ss_pred HHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCC----
Confidence 345556677888999999999999999999986 35899999999999999988865 467999999998752
Q ss_pred hhHHHhhhcccCccEEEEcCCCC
Q psy17793 154 IDIERMKLQKESFDRILLDAPCS 176 (397)
Q Consensus 154 ~d~~~~~~~~~~fD~Il~DpPCS 176 (397)
+ ..||.|+.|+|+.
T Consensus 89 -------~--~~~d~Vv~NlPy~ 102 (258)
T PRK14896 89 -------L--PEFNKVVSNLPYQ 102 (258)
T ss_pred -------c--hhceEEEEcCCcc
Confidence 2 2489999999964
No 167
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.67 E-value=2.3e-07 Score=86.41 Aligned_cols=135 Identities=24% Similarity=0.299 Sum_probs=91.7
Q ss_pred hHHHHHhcc------CCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccc
Q psy17793 73 PSILAGHYL------DVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDST 146 (397)
Q Consensus 73 ~S~l~~~~L------~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~ 146 (397)
-|.|++.++ .+++|.+||-+||++|..-.|++..++..|.|+|+|.|+...+.+-+.+++- +||..+..|++
T Consensus 55 RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--~NIiPIl~DAr 132 (229)
T PF01269_consen 55 RSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--PNIIPILEDAR 132 (229)
T ss_dssp T-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--TTEEEEES-TT
T ss_pred hhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--CceeeeeccCC
Confidence 466666553 3678999999999999999999999988999999999999999988777765 68999999998
Q ss_pred cccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccc
Q psy17793 147 RINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLL 226 (397)
Q Consensus 147 ~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lL 226 (397)
..... ...-+.+|+|+.|.. + +... +-++.+ +-.+|
T Consensus 133 ~P~~Y--------~~lv~~VDvI~~DVa---------------Q---p~Qa-------~I~~~N-----------a~~fL 168 (229)
T PF01269_consen 133 HPEKY--------RMLVEMVDVIFQDVA---------------Q---PDQA-------RIAALN-----------ARHFL 168 (229)
T ss_dssp SGGGG--------TTTS--EEEEEEE-S---------------S---TTHH-------HHHHHH-----------HHHHE
T ss_pred ChHHh--------hcccccccEEEecCC---------------C---hHHH-------HHHHHH-----------HHhhc
Confidence 76422 112358999999876 0 1111 223444 66799
Q ss_pred cCCcEEEEEe--cCCC-ccccHHHHHHHHH
Q psy17793 227 KKDGILVYCT--CSLS-VEENEAVIAWILH 253 (397)
Q Consensus 227 kpgG~lvysT--CS~~-~eEnE~vV~~~L~ 253 (397)
|+||.++.+- -|+. ..+.+++.+.-.+
T Consensus 169 k~gG~~~i~iKa~siD~t~~p~~vf~~e~~ 198 (229)
T PF01269_consen 169 KPGGHLIISIKARSIDSTADPEEVFAEEVK 198 (229)
T ss_dssp EEEEEEEEEEEHHHH-SSSSHHHHHHHHHH
T ss_pred cCCcEEEEEEecCcccCcCCHHHHHHHHHH
Confidence 9999988764 3343 3445555544443
No 168
>PRK01581 speE spermidine synthase; Validated
Probab=98.65 E-value=1.5e-07 Score=94.13 Aligned_cols=124 Identities=18% Similarity=0.207 Sum_probs=82.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHH--HH---Hh--CCCcEEEEEcccccccccchhhHH
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEET--IK---KL--QLSSIQTHVYDSTRINTSSQIDIE 157 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n--~~---~~--g~~~v~~~~~D~~~~~~~~~~d~~ 157 (397)
...+||++|+|.|+.+..+++. .+..+|+++|+|+.+++.+++. +. +. .-++++++.+|+..+...
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~------ 222 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS------ 222 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh------
Confidence 3469999999999976666653 3457899999999999999962 21 21 234699999999876421
Q ss_pred HhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEec
Q psy17793 158 RMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC 237 (397)
Q Consensus 158 ~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTC 237 (397)
..++||+|++|.|= |.. .....+ ...++++. +.+.|+|||+++...-
T Consensus 223 ----~~~~YDVIIvDl~D------P~~----------~~~~~L--yT~EFy~~-----------~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 223 ----PSSLYDVIIIDFPD------PAT----------ELLSTL--YTSELFAR-----------IATFLTEDGAFVCQSN 269 (374)
T ss_pred ----cCCCccEEEEcCCC------ccc----------cchhhh--hHHHHHHH-----------HHHhcCCCcEEEEecC
Confidence 34679999999861 100 000111 12556666 8889999999887643
Q ss_pred CCCccccHHHHHH
Q psy17793 238 SLSVEENEAVIAW 250 (397)
Q Consensus 238 S~~~eEnE~vV~~ 250 (397)
++....+++..
T Consensus 270 --sp~~~~~~~~~ 280 (374)
T PRK01581 270 --SPADAPLVYWS 280 (374)
T ss_pred --ChhhhHHHHHH
Confidence 33444444333
No 169
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=98.64 E-value=9.4e-07 Score=85.55 Aligned_cols=95 Identities=20% Similarity=0.234 Sum_probs=79.0
Q ss_pred HHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH
Q psy17793 77 AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI 156 (397)
Q Consensus 77 ~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~ 156 (397)
+...|.++++...+|+.-|-||.+..+.+.++..++++|+|.|+.+++.++++++.++ .++.++...+.++...
T Consensus 15 ~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l~~~----- 88 (314)
T COG0275 15 VVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANLAEA----- 88 (314)
T ss_pred HHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHHHHHH-----
Confidence 3467889999999999999999999999998888999999999999999999999987 6789988887766311
Q ss_pred HHhhhcccCccEEEEcCCCCCC
Q psy17793 157 ERMKLQKESFDRILLDAPCSGF 178 (397)
Q Consensus 157 ~~~~~~~~~fD~Il~DpPCSg~ 178 (397)
......+++|.||+|-=-|+.
T Consensus 89 -l~~~~i~~vDGiL~DLGVSS~ 109 (314)
T COG0275 89 -LKELGIGKVDGILLDLGVSSP 109 (314)
T ss_pred -HHhcCCCceeEEEEeccCCcc
Confidence 111234689999999877774
No 170
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.63 E-value=1.2e-07 Score=91.99 Aligned_cols=87 Identities=15% Similarity=0.153 Sum_probs=69.2
Q ss_pred HHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccch
Q psy17793 74 SILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQ 153 (397)
Q Consensus 74 S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~ 153 (397)
...+...+++.++++|||+|||+|..|..++... .+|+|+|+|+.+++.+++++.. ++++++.+|+..+.
T Consensus 31 ~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~~~---- 100 (272)
T PRK00274 31 LDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE---DNLTIIEGDALKVD---- 100 (272)
T ss_pred HHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc---CceEEEEChhhcCC----
Confidence 3445556778889999999999999999999862 3899999999999999987643 57999999998763
Q ss_pred hhHHHhhhcccCccEEEEcCCCCC
Q psy17793 154 IDIERMKLQKESFDRILLDAPCSG 177 (397)
Q Consensus 154 ~d~~~~~~~~~~fD~Il~DpPCSg 177 (397)
+....+|.|+.|||+.-
T Consensus 101 -------~~~~~~~~vv~NlPY~i 117 (272)
T PRK00274 101 -------LSELQPLKVVANLPYNI 117 (272)
T ss_pred -------HHHcCcceEEEeCCccc
Confidence 11111699999999643
No 171
>KOG3191|consensus
Probab=98.60 E-value=5.7e-07 Score=80.98 Aligned_cols=137 Identities=16% Similarity=0.169 Sum_probs=97.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccC
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKES 165 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~ 165 (397)
.+.++++|||+|-.++.+++.+.+.....|.|+++.+++..++.++.+++. +.+++.|...-. ..++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~-~~~V~tdl~~~l------------~~~~ 110 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH-IDVVRTDLLSGL------------RNES 110 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc-cceeehhHHhhh------------ccCC
Confidence 568999999999999999999888888999999999999999999998874 788888876542 4488
Q ss_pred ccEEEEcCCCCCCCCCcc----cccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCc
Q psy17793 166 FDRILLDAPCSGFGQRPM----FYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSV 241 (397)
Q Consensus 166 fD~Il~DpPCSg~G~~p~----~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~ 241 (397)
+|+++.|||+--+.-.|. +...|. ....... .-.++|.. .-.+|.|.|.+...+|.-+
T Consensus 111 VDvLvfNPPYVpt~~~~i~~~~i~~a~a-----GG~~Gr~-v~d~ll~~-----------v~~iLSp~Gv~Ylv~~~~N- 172 (209)
T KOG3191|consen 111 VDVLVFNPPYVPTSDEEIGDEGIASAWA-----GGKDGRE-VTDRLLPQ-----------VPDILSPRGVFYLVALRAN- 172 (209)
T ss_pred ccEEEECCCcCcCCcccchhHHHHHHHh-----cCcchHH-HHHHHHhh-----------hhhhcCcCceEEeeehhhc-
Confidence 999999999865432111 111121 0011111 11445555 7778999999988876522
Q ss_pred cccHHHHHHHHHHC
Q psy17793 242 EENEAVIAWILHRH 255 (397)
Q Consensus 242 eEnE~vV~~~L~~~ 255 (397)
+..-|.++++..
T Consensus 173 --~p~ei~k~l~~~ 184 (209)
T KOG3191|consen 173 --KPKEILKILEKK 184 (209)
T ss_pred --CHHHHHHHHhhc
Confidence 233444577665
No 172
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.60 E-value=8.6e-07 Score=87.15 Aligned_cols=65 Identities=9% Similarity=0.109 Sum_probs=53.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEEcccccc
Q psy17793 84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ-LSSIQTHVYDSTRI 148 (397)
Q Consensus 84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g-~~~v~~~~~D~~~~ 148 (397)
.++.+|||+|||+|.+|..+++.+....+++++|+|+.+++.+++++.... --+|..+++|+...
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~ 127 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQP 127 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccch
Confidence 467799999999999999999876435789999999999999999887643 12477789998763
No 173
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.59 E-value=1.2e-07 Score=87.52 Aligned_cols=111 Identities=17% Similarity=0.202 Sum_probs=82.1
Q ss_pred hhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEccccccccc
Q psy17793 72 LPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTS 151 (397)
Q Consensus 72 ~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~ 151 (397)
++.-+.++ +.+.+-.+|.|+|||||+.|..++.+- +...|+|+|.|+.|++.++++ +.++++..+|...+.
T Consensus 18 Pa~dLla~-Vp~~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~r-----lp~~~f~~aDl~~w~-- 88 (257)
T COG4106 18 PARDLLAR-VPLERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQR-----LPDATFEEADLRTWK-- 88 (257)
T ss_pred cHHHHHhh-CCccccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHh-----CCCCceecccHhhcC--
Confidence 33444433 234566799999999999999999987 578999999999999998654 357788999998873
Q ss_pred chhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcE
Q psy17793 152 SQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGI 231 (397)
Q Consensus 152 ~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~ 231 (397)
+...+|+|+.|+- ..|- ++ .-++|.+ .+..|.|||.
T Consensus 89 ----------p~~~~dllfaNAv-----------lqWl----pd--------H~~ll~r-----------L~~~L~Pgg~ 124 (257)
T COG4106 89 ----------PEQPTDLLFANAV-----------LQWL----PD--------HPELLPR-----------LVSQLAPGGV 124 (257)
T ss_pred ----------CCCccchhhhhhh-----------hhhc----cc--------cHHHHHH-----------HHHhhCCCce
Confidence 4467899998653 2221 11 2455666 7778999999
Q ss_pred EEEE
Q psy17793 232 LVYC 235 (397)
Q Consensus 232 lvys 235 (397)
|..-
T Consensus 125 LAVQ 128 (257)
T COG4106 125 LAVQ 128 (257)
T ss_pred EEEE
Confidence 9875
No 174
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.59 E-value=2.9e-07 Score=84.02 Aligned_cols=87 Identities=16% Similarity=0.238 Sum_probs=67.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhc
Q psy17793 83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ 162 (397)
Q Consensus 83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~ 162 (397)
++||.+|||+|||.|....++.+. .+...+++|++++.+..+.++ | +.++++|+..-+ ..|+
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~r----G---v~Viq~Dld~gL---------~~f~ 72 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVAR----G---VSVIQGDLDEGL---------ADFP 72 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHc----C---CCEEECCHHHhH---------hhCC
Confidence 467999999999999999888874 467899999999998777653 4 457888886543 2378
Q ss_pred ccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHH
Q psy17793 163 KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQA 210 (397)
Q Consensus 163 ~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~ 210 (397)
+++||.|++ ...++.+... .++|++
T Consensus 73 d~sFD~VIl----------------------sqtLQ~~~~P-~~vL~E 97 (193)
T PF07021_consen 73 DQSFDYVIL----------------------SQTLQAVRRP-DEVLEE 97 (193)
T ss_pred CCCccEEeh----------------------HhHHHhHhHH-HHHHHH
Confidence 899999997 4555555544 677777
No 175
>KOG1541|consensus
Probab=98.59 E-value=2.8e-07 Score=85.25 Aligned_cols=146 Identities=21% Similarity=0.160 Sum_probs=95.8
Q ss_pred CCcEEEechhHHHHHhccCCCC--CCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEE
Q psy17793 64 SSMGILQNLPSILAGHYLDVQP--GQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTH 141 (397)
Q Consensus 64 ~g~~~~Qd~~S~l~~~~L~~~~--g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~ 141 (397)
+....||-+-+.-+.++|+..+ ..-|||+|||+|.-+..+.+ .+-..+++|+|+.+++.+.+. .+. -.++
T Consensus 27 sri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~---~Gh~wiGvDiSpsML~~a~~~--e~e---gdli 98 (270)
T KOG1541|consen 27 SRIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSD---SGHQWIGVDISPSMLEQAVER--ELE---GDLI 98 (270)
T ss_pred ceeeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheecc---CCceEEeecCCHHHHHHHHHh--hhh---cCee
Confidence 3456788888877778887665 56899999999988866555 345689999999999999863 221 1456
Q ss_pred EcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhcccccc
Q psy17793 142 VYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQ 221 (397)
Q Consensus 142 ~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~ 221 (397)
.+|.-.- .+|.++.||.+|. -|. -.|- -....++...+++|+.- |-+
T Consensus 99 l~DMG~G----------lpfrpGtFDg~IS---ISA--------vQWL----cnA~~s~~~P~~Rl~~F---F~t----- 145 (270)
T KOG1541|consen 99 LCDMGEG----------LPFRPGTFDGVIS---ISA--------VQWL----CNADKSLHVPKKRLLRF---FGT----- 145 (270)
T ss_pred eeecCCC----------CCCCCCccceEEE---eee--------eeee----cccCccccChHHHHHHH---hhh-----
Confidence 6676543 3578899999884 010 0111 00111111122333222 323
Q ss_pred ccccccCCcEEEEEecCCCccccHHHHHHHHHH
Q psy17793 222 GIPLLKKDGILVYCTCSLSVEENEAVIAWILHR 254 (397)
Q Consensus 222 a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~ 254 (397)
.+..|++|++.|+- ...||++.++.+++.
T Consensus 146 Ly~~l~rg~raV~Q----fYpen~~q~d~i~~~ 174 (270)
T KOG1541|consen 146 LYSCLKRGARAVLQ----FYPENEAQIDMIMQQ 174 (270)
T ss_pred hhhhhccCceeEEE----ecccchHHHHHHHHH
Confidence 77899999999985 457899898887765
No 176
>PRK05785 hypothetical protein; Provisional
Probab=98.57 E-value=1.8e-07 Score=88.28 Aligned_cols=66 Identities=21% Similarity=0.223 Sum_probs=53.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhccc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE 164 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~ 164 (397)
++.+|||+|||+|..+..++... +++|+|+|.|+++++.+++.. ..+++|+..+ ++.++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~--------~~~~~d~~~l-----------p~~d~ 109 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD--------DKVVGSFEAL-----------PFRDK 109 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc--------ceEEechhhC-----------CCCCC
Confidence 47799999999999999998864 469999999999999987631 2356777655 25678
Q ss_pred CccEEEE
Q psy17793 165 SFDRILL 171 (397)
Q Consensus 165 ~fD~Il~ 171 (397)
+||+|++
T Consensus 110 sfD~v~~ 116 (226)
T PRK05785 110 SFDVVMS 116 (226)
T ss_pred CEEEEEe
Confidence 9999997
No 177
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.57 E-value=9.1e-07 Score=83.10 Aligned_cols=108 Identities=13% Similarity=0.122 Sum_probs=73.6
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC---------------CcEEEEEcccc
Q psy17793 82 DVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL---------------SSIQTHVYDST 146 (397)
Q Consensus 82 ~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~---------------~~v~~~~~D~~ 146 (397)
.+.++.+|||+|||.|.-+..+|+ .+..|+|+|+|+.+++.+.+ +.++ .+|++.++|+.
T Consensus 34 ~~~~~~rvL~~gCG~G~da~~LA~---~G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~ 107 (218)
T PRK13255 34 ALPAGSRVLVPLCGKSLDMLWLAE---QGHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFF 107 (218)
T ss_pred CCCCCCeEEEeCCCChHhHHHHHh---CCCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECccc
Confidence 345678999999999999999998 35689999999999998642 2222 35888899988
Q ss_pred cccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHH-HHHHHHHHHHhhhhcccccccccc
Q psy17793 147 RINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYA-NIQKKLLQAVYRFVSLFDWQGIPL 225 (397)
Q Consensus 147 ~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~-~~Q~~lL~~~~~f~~~~~~~a~~l 225 (397)
.+... ....||.|+- ...+..+. +...+.+.. ..++
T Consensus 108 ~l~~~----------~~~~fd~v~D----------------------~~~~~~l~~~~R~~~~~~-----------l~~l 144 (218)
T PRK13255 108 ALTAA----------DLADVDAVYD----------------------RAALIALPEEMRERYVQQ-----------LAAL 144 (218)
T ss_pred CCCcc----------cCCCeeEEEe----------------------hHhHhhCCHHHHHHHHHH-----------HHHH
Confidence 76311 1246888873 01111111 122455666 8889
Q ss_pred ccCCcEEEEEecC
Q psy17793 226 LKKDGILVYCTCS 238 (397)
Q Consensus 226 LkpgG~lvysTCS 238 (397)
|||||++++.|-.
T Consensus 145 L~pgG~~~l~~~~ 157 (218)
T PRK13255 145 LPAGCRGLLVTLD 157 (218)
T ss_pred cCCCCeEEEEEEE
Confidence 9999986655433
No 178
>KOG2671|consensus
Probab=98.57 E-value=3.2e-08 Score=96.60 Aligned_cols=89 Identities=24% Similarity=0.285 Sum_probs=73.1
Q ss_pred HHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHH-------HHHHHHHHhCCCc--EEEEEcc
Q psy17793 74 SILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVT-------KLEETIKKLQLSS--IQTHVYD 144 (397)
Q Consensus 74 S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~-------~l~~n~~~~g~~~--v~~~~~D 144 (397)
|.+.+....++||+.|.|-..|+|+.....|.. ++.|+|.|||-..+. ..+.|++++|... +.+..+|
T Consensus 197 Sli~AN~Amv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D 273 (421)
T KOG2671|consen 197 SLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTAD 273 (421)
T ss_pred HHHHhhhhccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeec
Confidence 566677777899999999999999998766664 689999999988776 4689999999654 7788899
Q ss_pred cccccccchhhHHHhhhcccCccEEEEcCCC
Q psy17793 145 STRINTSSQIDIERMKLQKESFDRILLDAPC 175 (397)
Q Consensus 145 ~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPC 175 (397)
+.+.. ...+..||.|+||||+
T Consensus 274 ~sn~~----------~rsn~~fDaIvcDPPY 294 (421)
T KOG2671|consen 274 FSNPP----------LRSNLKFDAIVCDPPY 294 (421)
T ss_pred ccCcc----------hhhcceeeEEEeCCCc
Confidence 88763 2345689999999996
No 179
>PRK06202 hypothetical protein; Provisional
Probab=98.56 E-value=1.9e-07 Score=88.05 Aligned_cols=79 Identities=15% Similarity=0.113 Sum_probs=57.9
Q ss_pred hccCCCCCCeEEEEcCCCChHHHHHHHHcC---CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhh
Q psy17793 79 HYLDVQPGQKVLDMCAAPGNKLTHIALLMN---DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQID 155 (397)
Q Consensus 79 ~~L~~~~g~~VLDlcagpG~kt~~lA~~~~---~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d 155 (397)
..+...++.+|||+|||+|..+..++.... ...+|+|+|+|+.+++.++++....+ +++...|+..+.
T Consensus 54 ~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~---~~~~~~~~~~l~------ 124 (232)
T PRK06202 54 PALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG---VTFRQAVSDELV------ 124 (232)
T ss_pred HhcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC---CeEEEEeccccc------
Confidence 344445678999999999999998887542 23589999999999999988765443 455555554432
Q ss_pred HHHhhhcccCccEEEE
Q psy17793 156 IERMKLQKESFDRILL 171 (397)
Q Consensus 156 ~~~~~~~~~~fD~Il~ 171 (397)
..+++||+|++
T Consensus 125 -----~~~~~fD~V~~ 135 (232)
T PRK06202 125 -----AEGERFDVVTS 135 (232)
T ss_pred -----ccCCCccEEEE
Confidence 23468999997
No 180
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.54 E-value=5.9e-07 Score=94.40 Aligned_cols=138 Identities=17% Similarity=0.211 Sum_probs=101.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhccc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE 164 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~ 164 (397)
.+..+||+|||.|..++++|... +...++|+|++...+..+.+.+++.|++|+.+++.|+..+.. .++++
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~---------~~~~~ 416 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILN---------DLPNN 416 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHH---------hcCcc
Confidence 46789999999999999999985 567899999999999999999999999999998888764431 25667
Q ss_pred CccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCcccc
Q psy17793 165 SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244 (397)
Q Consensus 165 ~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~eEn 244 (397)
++|.|.++=| +|+.+.+.. +.++ .|..+|+. ..++|||||.|.+.|-. ++-
T Consensus 417 sv~~i~i~FP------DPWpKkrh~----krRl-----~~~~fl~~-----------~~~~Lk~gG~i~~~TD~---~~y 467 (506)
T PRK01544 417 SLDGIYILFP------DPWIKNKQK----KKRI-----FNKERLKI-----------LQDKLKDNGNLVFASDI---ENY 467 (506)
T ss_pred cccEEEEECC------CCCCCCCCc----cccc-----cCHHHHHH-----------HHHhcCCCCEEEEEcCC---HHH
Confidence 8999999877 355443322 1222 34666777 88899999999998643 222
Q ss_pred HHHHHHHHHHCCCcEEE
Q psy17793 245 EAVIAWILHRHPEVELV 261 (397)
Q Consensus 245 E~vV~~~L~~~~~~~l~ 261 (397)
-+.....+++++.++..
T Consensus 468 ~~~~~~~~~~~~~f~~~ 484 (506)
T PRK01544 468 FYEAIELIQQNGNFEII 484 (506)
T ss_pred HHHHHHHHHhCCCeEec
Confidence 22233344566667654
No 181
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=98.52 E-value=2e-07 Score=91.35 Aligned_cols=93 Identities=20% Similarity=0.269 Sum_probs=64.9
Q ss_pred HhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHH
Q psy17793 78 GHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIE 157 (397)
Q Consensus 78 ~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~ 157 (397)
...|.++++..++|+.-|.||.|..+++.+.+ ++|+|+|.|+.+++.++++++.++ .++.++..++.++...
T Consensus 13 l~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~~-~r~~~~~~~F~~l~~~------ 84 (310)
T PF01795_consen 13 LEALNPKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKFD-DRFIFIHGNFSNLDEY------ 84 (310)
T ss_dssp HHHHT--TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCCC-TTEEEEES-GGGHHHH------
T ss_pred HHhhCcCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhcc-ceEEEEeccHHHHHHH------
Confidence 35667899999999999999999999998766 999999999999999998887663 5699999998876321
Q ss_pred Hhhh-cccCccEEEEcCCCCCC
Q psy17793 158 RMKL-QKESFDRILLDAPCSGF 178 (397)
Q Consensus 158 ~~~~-~~~~fD~Il~DpPCSg~ 178 (397)
.... ....+|.||+|-=+|+.
T Consensus 85 l~~~~~~~~~dgiL~DLGvSS~ 106 (310)
T PF01795_consen 85 LKELNGINKVDGILFDLGVSSM 106 (310)
T ss_dssp HHHTTTTS-EEEEEEE-S--HH
T ss_pred HHHccCCCccCEEEEccccCHH
Confidence 1112 23579999999998874
No 182
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.51 E-value=1.4e-06 Score=92.06 Aligned_cols=88 Identities=14% Similarity=0.242 Sum_probs=63.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHcCC-------CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHH
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLMND-------TGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIER 158 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~~~-------~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~ 158 (397)
+.+|||.|||+|++.+.++..+.. ...++|+|+++..+..++.++..++.-.+.+.+.|........
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~------ 105 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLN------ 105 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccc------
Confidence 458999999999999998876631 2568999999999999999998887333556666654321000
Q ss_pred hhhcccCccEEEEcCCCCCCC
Q psy17793 159 MKLQKESFDRILLDAPCSGFG 179 (397)
Q Consensus 159 ~~~~~~~fD~Il~DpPCSg~G 179 (397)
.....+.||+|+.|||+....
T Consensus 106 ~~~~~~~fD~IIgNPPy~~~k 126 (524)
T TIGR02987 106 IESYLDLFDIVITNPPYGRLK 126 (524)
T ss_pred cccccCcccEEEeCCCccccC
Confidence 000125799999999987653
No 183
>KOG4589|consensus
Probab=98.50 E-value=2.4e-06 Score=77.27 Aligned_cols=137 Identities=21% Similarity=0.207 Sum_probs=83.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEc-ccccccccchhhHHHhhhc
Q psy17793 84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVY-DSTRINTSSQIDIERMKLQ 162 (397)
Q Consensus 84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~-D~~~~~~~~~~d~~~~~~~ 162 (397)
.|+++|||+|||||.++...-++.++.|.|.++|+-.- .-...+.++.+ |+++....... ....+
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----------~p~~Ga~~i~~~dvtdp~~~~ki---~e~lp 133 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----------EPPEGATIIQGNDVTDPETYRKI---FEALP 133 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----------cCCCCcccccccccCCHHHHHHH---HHhCC
Confidence 57999999999999999988888889999999998321 12223444444 66554211000 01135
Q ss_pred ccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCcc
Q psy17793 163 KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVE 242 (397)
Q Consensus 163 ~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~e 242 (397)
+..+|+||.|--=-.+|.+ + .+...+. +|..+||.| |+.+++|+|.++.-+ +..+
T Consensus 134 ~r~VdvVlSDMapnaTGvr-----------~-~Dh~~~i----~LC~s~l~~-------al~~~~p~g~fvcK~--w~g~ 188 (232)
T KOG4589|consen 134 NRPVDVVLSDMAPNATGVR-----------I-RDHYRSI----ELCDSALLF-------ALTLLIPNGSFVCKL--WDGS 188 (232)
T ss_pred CCcccEEEeccCCCCcCcc-----------h-hhHHHHH----HHHHHHHHH-------hhhhcCCCcEEEEEE--ecCC
Confidence 5689999998643333321 1 2333333 334444444 899999999998653 3334
Q ss_pred ccHHHHHHHHHHCCCcE
Q psy17793 243 ENEAVIAWILHRHPEVE 259 (397)
Q Consensus 243 EnE~vV~~~L~~~~~~~ 259 (397)
|.....+.+.+.+..++
T Consensus 189 e~~~l~r~l~~~f~~Vk 205 (232)
T KOG4589|consen 189 EEALLQRRLQAVFTNVK 205 (232)
T ss_pred chHHHHHHHHHHhhhcE
Confidence 44445555555554333
No 184
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.47 E-value=1.8e-06 Score=80.69 Aligned_cols=71 Identities=23% Similarity=0.227 Sum_probs=59.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEEcccccccccchhhHHHhhhc
Q psy17793 84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL-SSIQTHVYDSTRINTSSQIDIERMKLQ 162 (397)
Q Consensus 84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~-~~v~~~~~D~~~~~~~~~~d~~~~~~~ 162 (397)
.++.+|||+|||+|..+..++.. ...|+++|+|+.+++.+++++...+. +++.+..+|... .
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--------------~ 124 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES--------------L 124 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh--------------c
Confidence 56789999999999999988874 35799999999999999999998887 468888888321 2
Q ss_pred ccCccEEEE
Q psy17793 163 KESFDRILL 171 (397)
Q Consensus 163 ~~~fD~Il~ 171 (397)
.+.||+|++
T Consensus 125 ~~~fD~v~~ 133 (230)
T PRK07580 125 LGRFDTVVC 133 (230)
T ss_pred cCCcCEEEE
Confidence 367999986
No 185
>KOG1596|consensus
Probab=98.43 E-value=7.3e-07 Score=83.44 Aligned_cols=136 Identities=25% Similarity=0.295 Sum_probs=102.6
Q ss_pred hHHHHHhccC------CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccc
Q psy17793 73 PSILAGHYLD------VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDST 146 (397)
Q Consensus 73 ~S~l~~~~L~------~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~ 146 (397)
-|.|++.++. ++||.+||=+||++|..-.|++..+++.+.|+|+|.|...=+.|..++++- +||..+..|++
T Consensus 138 rSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR--tNiiPIiEDAr 215 (317)
T KOG1596|consen 138 RSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR--TNIIPIIEDAR 215 (317)
T ss_pred HHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc--CCceeeeccCC
Confidence 3667766653 689999999999999999999999999999999999998888888777665 68899999998
Q ss_pred cccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccc
Q psy17793 147 RINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLL 226 (397)
Q Consensus 147 ~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lL 226 (397)
...+. ...-..+|.|+.|.+ +.+.. +-+..+ |..+|
T Consensus 216 hP~KY--------RmlVgmVDvIFaDva-------------------qpdq~------RivaLN-----------A~~FL 251 (317)
T KOG1596|consen 216 HPAKY--------RMLVGMVDVIFADVA-------------------QPDQA------RIVALN-----------AQYFL 251 (317)
T ss_pred Cchhe--------eeeeeeEEEEeccCC-------------------Cchhh------hhhhhh-----------hhhhh
Confidence 76321 123357899999987 11111 222234 77899
Q ss_pred cCCcEEEEE---ecCCCccccHHHHHHHHHH
Q psy17793 227 KKDGILVYC---TCSLSVEENEAVIAWILHR 254 (397)
Q Consensus 227 kpgG~lvys---TCS~~~eEnE~vV~~~L~~ 254 (397)
|+||-+|.| .|+-....+|.+.+.-.++
T Consensus 252 k~gGhfvisikancidstv~ae~vFa~Ev~k 282 (317)
T KOG1596|consen 252 KNGGHFVISIKANCIDSTVFAEAVFAAEVKK 282 (317)
T ss_pred ccCCeEEEEEecccccccccHHHHHHHHHHH
Confidence 999998887 5777777888776554433
No 186
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.43 E-value=2.3e-06 Score=85.77 Aligned_cols=138 Identities=17% Similarity=0.261 Sum_probs=94.7
Q ss_pred cCCCcEEEechhH---HHHHh---ccCCCCCCeEEEEcCCCChHHHHHHHHcCC--------------------------
Q psy17793 62 LDSSMGILQNLPS---ILAGH---YLDVQPGQKVLDMCAAPGNKLTHIALLMND-------------------------- 109 (397)
Q Consensus 62 ~~~g~~~~Qd~~S---~l~~~---~L~~~~g~~VLDlcagpG~kt~~lA~~~~~-------------------------- 109 (397)
.+-||-..+..+. .+++. +.+.++++.++|--||+|.+.+..|.+-.+
T Consensus 162 hkRGyR~~~g~ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~ 241 (381)
T COG0116 162 HKRGYRVYDGPAPLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLR 241 (381)
T ss_pred hhccccccCCCCCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHH
Confidence 4556655554442 23332 334677889999999999999988776432
Q ss_pred -----Cc-------EEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCC
Q psy17793 110 -----TG-------TLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCS 176 (397)
Q Consensus 110 -----~~-------~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCS 176 (397)
.+ .++|+|+|+.+++.++.|+++.|+.. |++...|++.+.. ++ +.+|+|++|||+
T Consensus 242 ~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~---------~~--~~~gvvI~NPPY- 309 (381)
T COG0116 242 EEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKE---------PL--EEYGVVISNPPY- 309 (381)
T ss_pred HHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCC---------CC--CcCCEEEeCCCc-
Confidence 11 47899999999999999999999976 9999999998742 12 689999999995
Q ss_pred CCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793 177 GFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT 236 (397)
Q Consensus 177 g~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT 236 (397)
|.| -.+ ++.+. .+-+.+.+. +.+.++--++.|++|
T Consensus 310 --GeR-----lg~----~~~v~---~LY~~fg~~-----------lk~~~~~ws~~v~tt 344 (381)
T COG0116 310 --GER-----LGS----EALVA---KLYREFGRT-----------LKRLLAGWSRYVFTT 344 (381)
T ss_pred --chh-----cCC----hhhHH---HHHHHHHHH-----------HHHHhcCCceEEEEc
Confidence 211 001 12222 233455555 556777777888874
No 187
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.42 E-value=7.8e-07 Score=87.99 Aligned_cols=70 Identities=20% Similarity=0.166 Sum_probs=57.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC-----CCcEEEEEcccccccccchhhHHHh
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ-----LSSIQTHVYDSTRINTSSQIDIERM 159 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g-----~~~v~~~~~D~~~~~~~~~~d~~~~ 159 (397)
++.+|||+|||+|..+..++.. +.+|+|+|+|+.+++.++++++..+ ..++++...|...+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----------- 209 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----------- 209 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc-----------
Confidence 5789999999999999999874 4689999999999999999988763 23567777776432
Q ss_pred hhcccCccEEEE
Q psy17793 160 KLQKESFDRILL 171 (397)
Q Consensus 160 ~~~~~~fD~Il~ 171 (397)
.++||+|++
T Consensus 210 ---~~~fD~Vv~ 218 (315)
T PLN02585 210 ---SGKYDTVTC 218 (315)
T ss_pred ---CCCcCEEEE
Confidence 367999986
No 188
>KOG3420|consensus
Probab=98.42 E-value=2.9e-07 Score=79.93 Aligned_cols=77 Identities=17% Similarity=0.301 Sum_probs=64.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793 84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK 163 (397)
Q Consensus 84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~ 163 (397)
-+|..++|+|||.|..++ |..+.....|+|+|+++.+++...+|++.+.+. +.+.++|..+.. +..
T Consensus 47 iEgkkl~DLgcgcGmLs~--a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq-idlLqcdildle-----------~~~ 112 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSI--AFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ-IDLLQCDILDLE-----------LKG 112 (185)
T ss_pred ccCcchhhhcCchhhhHH--HhhcCCCceEEeeecCHHHHHHHhhchHHhhhh-hheeeeeccchh-----------ccC
Confidence 368899999999999984 333445678999999999999999999999874 688888887763 345
Q ss_pred cCccEEEEcCC
Q psy17793 164 ESFDRILLDAP 174 (397)
Q Consensus 164 ~~fD~Il~DpP 174 (397)
+.||.++.|||
T Consensus 113 g~fDtaviNpp 123 (185)
T KOG3420|consen 113 GIFDTAVINPP 123 (185)
T ss_pred CeEeeEEecCC
Confidence 78999999999
No 189
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=4.1e-06 Score=76.73 Aligned_cols=129 Identities=26% Similarity=0.318 Sum_probs=94.8
Q ss_pred hHHHHHhccC------CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccc
Q psy17793 73 PSILAGHYLD------VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDST 146 (397)
Q Consensus 73 ~S~l~~~~L~------~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~ 146 (397)
-|.+++.+|. +++|++||=+||++|....|++...+ .|.|+|+|.++...+.+-..+++- +||..+..|++
T Consensus 58 RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R--~Ni~PIL~DA~ 134 (231)
T COG1889 58 RSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKR--PNIIPILEDAR 134 (231)
T ss_pred hhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHhC--CCceeeecccC
Confidence 4666666653 67899999999999999999999986 799999999999999988888764 68899999998
Q ss_pred cccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHH-HHHHHhhhhcccccccccc
Q psy17793 147 RINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKK-LLQAVYRFVSLFDWQGIPL 225 (397)
Q Consensus 147 ~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~-lL~~~~~f~~~~~~~a~~l 225 (397)
..... ...-+.+|+|..|.. .+-|.+ +..+ |-.+
T Consensus 135 ~P~~Y--------~~~Ve~VDviy~DVA--------------------------Qp~Qa~I~~~N-----------a~~F 169 (231)
T COG1889 135 KPEKY--------RHLVEKVDVIYQDVA--------------------------QPNQAEILADN-----------AEFF 169 (231)
T ss_pred CcHHh--------hhhcccccEEEEecC--------------------------CchHHHHHHHH-----------HHHh
Confidence 75321 122357999999875 011233 3345 7789
Q ss_pred ccCCcEE--EEEecCCCcccc-HHHHH
Q psy17793 226 LKKDGIL--VYCTCSLSVEEN-EAVIA 249 (397)
Q Consensus 226 LkpgG~l--vysTCS~~~eEn-E~vV~ 249 (397)
||+||.+ +.-.-|+...+. +++.+
T Consensus 170 Lk~~G~~~i~iKArSIdvT~dp~~vf~ 196 (231)
T COG1889 170 LKKGGYVVIAIKARSIDVTADPEEVFK 196 (231)
T ss_pred cccCCeEEEEEEeecccccCCHHHHHH
Confidence 9999954 455667665544 44444
No 190
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.35 E-value=4.7e-07 Score=81.87 Aligned_cols=100 Identities=18% Similarity=0.200 Sum_probs=79.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccC
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKES 165 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~ 165 (397)
.+.+.|+|||+|..+...|.. .-+|+|+|.+|.+.+.+++|++-.|..|++++.+|++... | ++
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~-----------f--e~ 96 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYD-----------F--EN 96 (252)
T ss_pred hhceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccccc-----------c--cc
Confidence 378999999999999877764 5689999999999999999999999999999999998763 3 46
Q ss_pred ccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEE
Q psy17793 166 FDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILV 233 (397)
Q Consensus 166 fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lv 233 (397)
.|+|+|. + -+..-+.+.|-..+.. ++++||..++++
T Consensus 97 ADvvicE--------------------m-lDTaLi~E~qVpV~n~-----------vleFLr~d~tii 132 (252)
T COG4076 97 ADVVICE--------------------M-LDTALIEEKQVPVINA-----------VLEFLRYDPTII 132 (252)
T ss_pred cceeHHH--------------------H-hhHHhhcccccHHHHH-----------HHHHhhcCCccc
Confidence 7999871 1 2222334566777888 777788887775
No 191
>KOG2899|consensus
Probab=98.34 E-value=1.6e-06 Score=81.36 Aligned_cols=48 Identities=15% Similarity=0.170 Sum_probs=42.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKL 133 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~ 133 (397)
.+..+||+||-+|..|+++|...+ ...|.|+|||+..++.|+++++..
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~-~r~iLGvDID~~LI~~Ark~~r~~ 105 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFG-PRRILGVDIDPVLIQRARKEIRFP 105 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhc-cceeeEeeccHHHHHHHHHhcccc
Confidence 356899999999999999999875 457999999999999999998754
No 192
>PLN02823 spermine synthase
Probab=98.30 E-value=8.4e-06 Score=81.35 Aligned_cols=78 Identities=14% Similarity=0.133 Sum_probs=62.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEEcccccccccchhhHHHhhh
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ----LSSIQTHVYDSTRINTSSQIDIERMKL 161 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g----~~~v~~~~~D~~~~~~~~~~d~~~~~~ 161 (397)
..+||.+|.|.|+.+..+++.- +..+|+++|+|+..++.+++.+...+ -++++++.+|++.+...
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~---------- 172 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK---------- 172 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh----------
Confidence 4689999999999888777642 34689999999999999999876432 24699999999987522
Q ss_pred cccCccEEEEcCC
Q psy17793 162 QKESFDRILLDAP 174 (397)
Q Consensus 162 ~~~~fD~Il~DpP 174 (397)
..++||+|++|.+
T Consensus 173 ~~~~yDvIi~D~~ 185 (336)
T PLN02823 173 RDEKFDVIIGDLA 185 (336)
T ss_pred CCCCccEEEecCC
Confidence 3468999999974
No 193
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.30 E-value=2.9e-06 Score=81.24 Aligned_cols=82 Identities=13% Similarity=0.184 Sum_probs=66.2
Q ss_pred HHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchh
Q psy17793 75 ILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQI 154 (397)
Q Consensus 75 ~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~ 154 (397)
.-+...++..++++|||+|||+|..|..++... ..|+++|+|+.+++.+++++.. ..+++++.+|+....
T Consensus 19 ~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~----- 88 (253)
T TIGR00755 19 QKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVD----- 88 (253)
T ss_pred HHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCC-----
Confidence 334456677889999999999999999999864 4699999999999999987754 357999999998763
Q ss_pred hHHHhhhcccCcc---EEEEcCC
Q psy17793 155 DIERMKLQKESFD---RILLDAP 174 (397)
Q Consensus 155 d~~~~~~~~~~fD---~Il~DpP 174 (397)
+ ..|| .|+.++|
T Consensus 89 ------~--~~~d~~~~vvsNlP 103 (253)
T TIGR00755 89 ------L--PDFPKQLKVVSNLP 103 (253)
T ss_pred ------h--hHcCCcceEEEcCC
Confidence 1 1355 9999998
No 194
>KOG2730|consensus
Probab=98.29 E-value=5.4e-07 Score=83.31 Aligned_cols=85 Identities=18% Similarity=0.257 Sum_probs=70.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccchhhHHHhhhcc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQK 163 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~~~ 163 (397)
.-+.|+|..||-||-|++.|.. ...|+++|+||.++..+++|++-+|+.+ |.++++|+.+.... ..+..
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~---~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~-------lq~~K 163 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ---GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASK-------LKADK 163 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh---CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHH-------Hhhhh
Confidence 3468999999999999998884 4689999999999999999999999976 99999999876422 12333
Q ss_pred cCccEEEEcCCCCCCC
Q psy17793 164 ESFDRILLDAPCSGFG 179 (397)
Q Consensus 164 ~~fD~Il~DpPCSg~G 179 (397)
..+|.|++-||-+|.+
T Consensus 164 ~~~~~vf~sppwggp~ 179 (263)
T KOG2730|consen 164 IKYDCVFLSPPWGGPS 179 (263)
T ss_pred heeeeeecCCCCCCcc
Confidence 4588999999999877
No 195
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.28 E-value=3e-06 Score=77.57 Aligned_cols=71 Identities=23% Similarity=0.259 Sum_probs=59.4
Q ss_pred eEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccCcc
Q psy17793 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFD 167 (397)
Q Consensus 88 ~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD 167 (397)
+++|+|+|.|--++-+|-.. +..+++.+|.+..++.-++.-+.++|++|+++++..+... ....+||
T Consensus 51 ~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~------------~~~~~fd 117 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEP------------EYRESFD 117 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHT------------TTTT-EE
T ss_pred eEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeeccc------------ccCCCcc
Confidence 89999999999998888765 6679999999999999999999999999999999988761 1346899
Q ss_pred EEEE
Q psy17793 168 RILL 171 (397)
Q Consensus 168 ~Il~ 171 (397)
.|++
T Consensus 118 ~v~a 121 (184)
T PF02527_consen 118 VVTA 121 (184)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9997
No 196
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.28 E-value=8.2e-06 Score=89.12 Aligned_cols=84 Identities=17% Similarity=0.255 Sum_probs=67.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHcC-----------------------------------------CCcEEEEEeCCHHH
Q psy17793 84 QPGQKVLDMCAAPGNKLTHIALLMN-----------------------------------------DTGTLIALDKSKPR 122 (397)
Q Consensus 84 ~~g~~VLDlcagpG~kt~~lA~~~~-----------------------------------------~~~~V~avD~s~~r 122 (397)
++++.++|.+||+|.+.+..|.+.. ...+|+|+|+|+.+
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 5678999999999999988776421 12369999999999
Q ss_pred HHHHHHHHHHhCCCc-EEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCC
Q psy17793 123 VTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCS 176 (397)
Q Consensus 123 l~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCS 176 (397)
++.+++|++.+|+.+ |.+..+|+.++.. +...+.||.|++|||+-
T Consensus 269 v~~A~~N~~~~g~~~~i~~~~~D~~~~~~---------~~~~~~~d~IvtNPPYg 314 (702)
T PRK11783 269 IQAARKNARRAGVAELITFEVKDVADLKN---------PLPKGPTGLVISNPPYG 314 (702)
T ss_pred HHHHHHHHHHcCCCcceEEEeCChhhccc---------ccccCCCCEEEECCCCc
Confidence 999999999999975 8899999987631 12235699999999963
No 197
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.28 E-value=3.2e-06 Score=87.45 Aligned_cols=117 Identities=20% Similarity=0.229 Sum_probs=78.7
Q ss_pred CCeEEEEcCCCChHHHHHHHH---cCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccchhhHHHhhh
Q psy17793 86 GQKVLDMCAAPGNKLTHIALL---MNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQIDIERMKL 161 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~---~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~~d~~~~~~ 161 (397)
+..|+|+|||+|..+...+.. .+...+|+|+|.++.+...+++.+++++.. .|+++.+|++.+.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~------------ 254 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVE------------ 254 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSC------------
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCC------------
Confidence 468999999999998655443 234679999999999999999998999984 5999999999883
Q ss_pred cccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC--C
Q psy17793 162 QKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS--L 239 (397)
Q Consensus 162 ~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS--~ 239 (397)
.++++|+|+.-.= .+++. .+ +. .+.|.. +-++|||||+++=+.++ +
T Consensus 255 lpekvDIIVSElL-------------Gsfg~-nE----l~---pE~Lda-----------~~rfLkp~Gi~IP~~~t~yl 302 (448)
T PF05185_consen 255 LPEKVDIIVSELL-------------GSFGD-NE----LS---PECLDA-----------ADRFLKPDGIMIPSSYTSYL 302 (448)
T ss_dssp HSS-EEEEEE----------------BTTBT-TT----SH---HHHHHH-----------GGGGEEEEEEEESSEEEEEE
T ss_pred CCCceeEEEEecc-------------CCccc-cc----cC---HHHHHH-----------HHhhcCCCCEEeCcchhhEE
Confidence 3468999997321 11110 01 11 345666 88999999998644444 3
Q ss_pred CccccHH
Q psy17793 240 SVEENEA 246 (397)
Q Consensus 240 ~~eEnE~ 246 (397)
.|-+.+.
T Consensus 303 aPiss~~ 309 (448)
T PF05185_consen 303 APISSPK 309 (448)
T ss_dssp EEEE-HH
T ss_pred EEeeCHH
Confidence 3444443
No 198
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=98.25 E-value=3.6e-06 Score=88.15 Aligned_cols=110 Identities=17% Similarity=0.145 Sum_probs=88.2
Q ss_pred CCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCC---CcEEEEEeCCHHHHHHHHHHHHHhCCC-cEE
Q psy17793 64 SSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMND---TGTLIALDKSKPRVTKLEETIKKLQLS-SIQ 139 (397)
Q Consensus 64 ~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~---~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~ 139 (397)
.|.|+....-+.+++.++.+++.++|+|-|||+|+.-+..+..+.. ...++|.|+++.....++.|+--.|+. ++.
T Consensus 165 ~GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~ 244 (489)
T COG0286 165 AGEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDAN 244 (489)
T ss_pred CCccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccc
Confidence 3888888889999999999999999999999999999998888743 367999999999999999999999987 355
Q ss_pred EEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCC
Q psy17793 140 THVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG 179 (397)
Q Consensus 140 ~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G 179 (397)
...+|...-+.. + .....++||.|+.+||.|+.+
T Consensus 245 i~~~dtl~~~~~---~---~~~~~~~~D~viaNPPf~~~~ 278 (489)
T COG0286 245 IRHGDTLSNPKH---D---DKDDKGKFDFVIANPPFSGKG 278 (489)
T ss_pred ccccccccCCcc---c---ccCCccceeEEEeCCCCCccc
Confidence 555655433211 0 012346799999999999766
No 199
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.24 E-value=5.1e-06 Score=79.61 Aligned_cols=97 Identities=11% Similarity=0.146 Sum_probs=76.4
Q ss_pred CcEEEechhH-HHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEc
Q psy17793 65 SMGILQNLPS-ILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVY 143 (397)
Q Consensus 65 g~~~~Qd~~S-~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~ 143 (397)
|.-++.|..- .-++...++.+++.||++|+|.|+.|..+++. ..+|+|+|+|+..++.+++.+. ...|++++.+
T Consensus 9 GQnFL~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~ 83 (259)
T COG0030 9 GQNFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLER---AARVTAIEIDRRLAEVLKERFA--PYDNLTVING 83 (259)
T ss_pred ccccccCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh---cCeEEEEEeCHHHHHHHHHhcc--cccceEEEeC
Confidence 3334455442 34566778888999999999999999999995 4679999999999999998876 3468999999
Q ss_pred ccccccccchhhHHHhhhccc-CccEEEEcCCCCC
Q psy17793 144 DSTRINTSSQIDIERMKLQKE-SFDRILLDAPCSG 177 (397)
Q Consensus 144 D~~~~~~~~~~d~~~~~~~~~-~fD~Il~DpPCSg 177 (397)
|+.+.. +..- .++.|+.|-|++=
T Consensus 84 DaLk~d-----------~~~l~~~~~vVaNlPY~I 107 (259)
T COG0030 84 DALKFD-----------FPSLAQPYKVVANLPYNI 107 (259)
T ss_pred chhcCc-----------chhhcCCCEEEEcCCCcc
Confidence 998873 2111 6899999999754
No 200
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=98.24 E-value=3.3e-06 Score=85.54 Aligned_cols=78 Identities=26% Similarity=0.247 Sum_probs=60.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc--EEEEEcccccccccchhhHHHhhhcc
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS--IQTHVYDSTRINTSSQIDIERMKLQK 163 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~--v~~~~~D~~~~~~~~~~d~~~~~~~~ 163 (397)
+-+|||.-||+|.-++..+.-+.+..+|+++|+|+++++.+++|++.++++. +++.+.|+..+.. ...
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~----------~~~ 119 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLY----------SRQ 119 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHC----------HST
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhh----------hcc
Confidence 3489999999999999999987666799999999999999999999999976 8999999977631 145
Q ss_pred cCccEEEEcC
Q psy17793 164 ESFDRILLDA 173 (397)
Q Consensus 164 ~~fD~Il~Dp 173 (397)
..||+|=+||
T Consensus 120 ~~fD~IDlDP 129 (377)
T PF02005_consen 120 ERFDVIDLDP 129 (377)
T ss_dssp T-EEEEEE--
T ss_pred ccCCEEEeCC
Confidence 7899999998
No 201
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.23 E-value=3.9e-06 Score=83.61 Aligned_cols=114 Identities=25% Similarity=0.334 Sum_probs=73.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC----------CcEEEEEcccccccccchh
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL----------SSIQTHVYDSTRINTSSQI 154 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~----------~~v~~~~~D~~~~~~~~~~ 154 (397)
++.+|||+|||-||-..-... .+-..++|+|++...++.++++.+.+.- -...++..|......
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~--~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l---- 135 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQK--AKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESL---- 135 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHH--TT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHH----
T ss_pred CCCeEEEecCCCchhHHHHHh--cCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchh----
Confidence 788999999999998876665 3567999999999999999999954321 124566777653210
Q ss_pred hHHHhhhcc--cCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEE
Q psy17793 155 DIERMKLQK--ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGIL 232 (397)
Q Consensus 155 d~~~~~~~~--~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~l 232 (397)
...+.. ..||+|-| .+..+..+.+ .+.. +.+|.+ +...|||||++
T Consensus 136 ---~~~~~~~~~~FDvVSc-----------QFalHY~Fes-e~~a-------r~~l~N-----------vs~~Lk~GG~F 182 (331)
T PF03291_consen 136 ---REKLPPRSRKFDVVSC-----------QFALHYAFES-EEKA-------RQFLKN-----------VSSLLKPGGYF 182 (331)
T ss_dssp ---HCTSSSTTS-EEEEEE-----------ES-GGGGGSS-HHHH-------HHHHHH-----------HHHTEEEEEEE
T ss_pred ---hhhccccCCCcceeeh-----------HHHHHHhcCC-HHHH-------HHHHHH-----------HHHhcCCCCEE
Confidence 011222 48999987 2222322111 1222 668889 99999999999
Q ss_pred EEEec
Q psy17793 233 VYCTC 237 (397)
Q Consensus 233 vysTC 237 (397)
+-+|-
T Consensus 183 IgT~~ 187 (331)
T PF03291_consen 183 IGTTP 187 (331)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 98753
No 202
>KOG1499|consensus
Probab=98.22 E-value=6.3e-06 Score=81.31 Aligned_cols=112 Identities=19% Similarity=0.131 Sum_probs=81.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccchhhHHHhhhcc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQK 163 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~~~ 163 (397)
.+..|||+|||+|..++..|.. +..+|+|+|.|.-+ +.+++.++.+++++ |+++.+.+..+. .+.
T Consensus 60 ~dK~VlDVGcGtGILS~F~akA--GA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~-----------LP~ 125 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKA--GARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIE-----------LPV 125 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHh--CcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEe-----------cCc
Confidence 5889999999999999877774 57899999987655 99999999999988 788888776652 234
Q ss_pred cCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCc
Q psy17793 164 ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSV 241 (397)
Q Consensus 164 ~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~ 241 (397)
+++|+|+. .|... .-+-..+|+.+|.+ ==++|+|||.+.=++|+++-
T Consensus 126 eKVDiIvS-------------EWMGy-----------~Ll~EsMldsVl~A-------RdkwL~~~G~i~P~~a~l~l 172 (346)
T KOG1499|consen 126 EKVDIIVS-------------EWMGY-----------FLLYESMLDSVLYA-------RDKWLKEGGLIYPDRATLYL 172 (346)
T ss_pred cceeEEee-------------hhhhH-----------HHHHhhhhhhhhhh-------hhhccCCCceEccccceEEE
Confidence 78999986 11111 11112334432222 23799999999988888654
No 203
>KOG1661|consensus
Probab=98.21 E-value=4.3e-06 Score=77.01 Aligned_cols=86 Identities=23% Similarity=0.301 Sum_probs=69.8
Q ss_pred HHhccC--CCCCCeEEEEcCCCChHHHHHHHHcCCCcEE-EEEeCCHHHHHHHHHHHHHhC----------CCcEEEEEc
Q psy17793 77 AGHYLD--VQPGQKVLDMCAAPGNKLTHIALLMNDTGTL-IALDKSKPRVTKLEETIKKLQ----------LSSIQTHVY 143 (397)
Q Consensus 77 ~~~~L~--~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V-~avD~s~~rl~~l~~n~~~~g----------~~~v~~~~~ 143 (397)
+-..|+ ++||..+||+|+|+|..|+.+|.+++..+.+ +++|.-++-++..++|+.+.- ..++.++.+
T Consensus 72 ~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvG 151 (237)
T KOG1661|consen 72 ALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVG 151 (237)
T ss_pred HHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeC
Confidence 334566 7899999999999999999999888766664 999999999999999998764 135788899
Q ss_pred ccccccccchhhHHHhhhcccCccEEEEcC
Q psy17793 144 DSTRINTSSQIDIERMKLQKESFDRILLDA 173 (397)
Q Consensus 144 D~~~~~~~~~~d~~~~~~~~~~fD~Il~Dp 173 (397)
|.+.... ....||+|.+-|
T Consensus 152 Dgr~g~~-----------e~a~YDaIhvGA 170 (237)
T KOG1661|consen 152 DGRKGYA-----------EQAPYDAIHVGA 170 (237)
T ss_pred CccccCC-----------ccCCcceEEEcc
Confidence 9887642 336799999844
No 204
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.17 E-value=4e-06 Score=75.88 Aligned_cols=80 Identities=21% Similarity=0.208 Sum_probs=51.6
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC---CCcEEEEEcccccccccchhhHHHh
Q psy17793 83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ---LSSIQTHVYDSTRINTSSQIDIERM 159 (397)
Q Consensus 83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g---~~~v~~~~~D~~~~~~~~~~d~~~~ 159 (397)
...+.+||++|||.|.-++.+|.+. +..+|++-|.++ .++.++.|++.++ -.++.+...|..... ...
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~-------~~~ 113 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDEL-------DSD 113 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-H-------HHH
T ss_pred hcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcc-------ccc
Confidence 3467899999999999998888763 567999999999 9999999999987 235777777654321 011
Q ss_pred hhcccCccEEEE
Q psy17793 160 KLQKESFDRILL 171 (397)
Q Consensus 160 ~~~~~~fD~Il~ 171 (397)
......||+||.
T Consensus 114 ~~~~~~~D~Ila 125 (173)
T PF10294_consen 114 LLEPHSFDVILA 125 (173)
T ss_dssp HHS-SSBSEEEE
T ss_pred ccccccCCEEEE
Confidence 123468999996
No 205
>KOG1099|consensus
Probab=98.17 E-value=5.5e-06 Score=77.15 Aligned_cols=129 Identities=22% Similarity=0.335 Sum_probs=86.9
Q ss_pred CeEEEEcCCCChHHHHHHHHcCC----Cc----EEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHH
Q psy17793 87 QKVLDMCAAPGNKLTHIALLMND----TG----TLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIER 158 (397)
Q Consensus 87 ~~VLDlcagpG~kt~~lA~~~~~----~~----~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~ 158 (397)
.+|+|+|||||+++..++..+-. .+ .|+|||+.+-. -++.|..+.+|.+...+. ..-.
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI~GV~qlq~DIT~~sta---e~Ii 108 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PIEGVIQLQGDITSASTA---EAII 108 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------ccCceEEeecccCCHhHH---HHHH
Confidence 58999999999999999987643 22 39999986532 456788889999876321 0001
Q ss_pred hhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793 159 MKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS 238 (397)
Q Consensus 159 ~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS 238 (397)
.-|..++-|+|++|-- |+.. -+ .++.++ .|.+||..||.. +...|||||.+|- -
T Consensus 109 ~hfggekAdlVvcDGA-------PDvT------Gl-Hd~DEy--~Q~qLllaAl~i-------~t~Vlk~Gg~FVa---K 162 (294)
T KOG1099|consen 109 EHFGGEKADLVVCDGA-------PDVT------GL-HDLDEY--VQAQLLLAALNI-------ATCVLKPGGSFVA---K 162 (294)
T ss_pred HHhCCCCccEEEeCCC-------CCcc------cc-ccHHHH--HHHHHHHHHHHH-------HhheecCCCeeeh---h
Confidence 1245568999999843 2221 11 334444 567888888877 7889999999986 3
Q ss_pred CCccccHHHHHHHHHHC
Q psy17793 239 LSVEENEAVIAWILHRH 255 (397)
Q Consensus 239 ~~~eEnE~vV~~~L~~~ 255 (397)
+...++-..+-.-|+.+
T Consensus 163 ifRg~~tslLysql~~f 179 (294)
T KOG1099|consen 163 IFRGRDTSLLYSQLRKF 179 (294)
T ss_pred hhccCchHHHHHHHHHH
Confidence 66666665555444443
No 206
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.13 E-value=1.8e-05 Score=77.04 Aligned_cols=119 Identities=18% Similarity=0.120 Sum_probs=74.5
Q ss_pred HHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEE-cccccccccchhh
Q psy17793 77 AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHV-YDSTRINTSSQID 155 (397)
Q Consensus 77 ~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~-~D~~~~~~~~~~d 155 (397)
+...+..-.|.+|||+||+.|..+..++.. +...|+|+|.+..-+...+---+-+|.+...... .-...+
T Consensus 107 l~p~l~~L~gk~VLDIGC~nGY~~frM~~~--GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~L------- 177 (315)
T PF08003_consen 107 LLPHLPDLKGKRVLDIGCNNGYYSFRMLGR--GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDL------- 177 (315)
T ss_pred HHhhhCCcCCCEEEEecCCCcHHHHHHhhc--CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhc-------
Confidence 334444567999999999999999988884 6678999999988776654444444543322211 111111
Q ss_pred HHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793 156 IERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC 235 (397)
Q Consensus 156 ~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys 235 (397)
+. .+.||.|++ .|. .++.+ .- ...|.. ....|++||.||.-
T Consensus 178 ----p~-~~~FDtVF~------MGV----LYHrr-----~P--------l~~L~~-----------Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 178 ----PN-LGAFDTVFS------MGV----LYHRR-----SP--------LDHLKQ-----------LKDSLRPGGELVLE 218 (315)
T ss_pred ----cc-cCCcCEEEE------eee----hhccC-----CH--------HHHHHH-----------HHHhhCCCCEEEEE
Confidence 12 468999996 331 11111 11 233444 66689999999999
Q ss_pred ecCCCccc
Q psy17793 236 TCSLSVEE 243 (397)
Q Consensus 236 TCS~~~eE 243 (397)
|--+..++
T Consensus 219 Tlvi~g~~ 226 (315)
T PF08003_consen 219 TLVIDGDE 226 (315)
T ss_pred EeeecCCC
Confidence 76554443
No 207
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.09 E-value=2.3e-05 Score=73.20 Aligned_cols=73 Identities=16% Similarity=0.223 Sum_probs=62.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccC
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKES 165 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~ 165 (397)
+.+++|+|+|.|--++-+|- +.+..+|+-+|...+|+.-+++..+.+|++|++++++.+.++.. ...
T Consensus 68 ~~~~~DIGSGaGfPGipLAI-~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~------------~~~ 134 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAI-AFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQ------------EKK 134 (215)
T ss_pred CCEEEEeCCCCCCchhhHHH-hccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhccc------------ccc
Confidence 57999999999999998884 34667799999999999999999999999999999998877631 123
Q ss_pred -ccEEEE
Q psy17793 166 -FDRILL 171 (397)
Q Consensus 166 -fD~Il~ 171 (397)
||+|++
T Consensus 135 ~~D~vts 141 (215)
T COG0357 135 QYDVVTS 141 (215)
T ss_pred cCcEEEe
Confidence 999986
No 208
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.08 E-value=2.3e-05 Score=74.91 Aligned_cols=127 Identities=16% Similarity=0.188 Sum_probs=85.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC----CcEEEEEcccccccccchhhHHHhh
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL----SSIQTHVYDSTRINTSSQIDIERMK 160 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~----~~v~~~~~D~~~~~~~~~~d~~~~~ 160 (397)
..++||=+|.|.|+.+..+... .+-.+|+++|+|+..++.+++-+..... ++++++..|+..+...
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~-~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~--------- 145 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKH-PPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKE--------- 145 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTS-TT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHT---------
T ss_pred CcCceEEEcCCChhhhhhhhhc-CCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHh---------
Confidence 4679999999999998877664 2346899999999999999998876543 3699999999887633
Q ss_pred hccc-CccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCC
Q psy17793 161 LQKE-SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSL 239 (397)
Q Consensus 161 ~~~~-~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~ 239 (397)
..+ +||+|++|.+= ..+.. ..+ ..++.++. +.+.|++||.++.-.-+
T Consensus 146 -~~~~~yDvIi~D~~d-p~~~~-------------~~l-----~t~ef~~~-----------~~~~L~~~Gv~v~~~~~- 193 (246)
T PF01564_consen 146 -TQEEKYDVIIVDLTD-PDGPA-------------PNL-----FTREFYQL-----------CKRRLKPDGVLVLQAGS- 193 (246)
T ss_dssp -SSST-EEEEEEESSS-TTSCG-------------GGG-----SSHHHHHH-----------HHHHEEEEEEEEEEEEE-
T ss_pred -ccCCcccEEEEeCCC-CCCCc-------------ccc-----cCHHHHHH-----------HHhhcCCCcEEEEEccC-
Confidence 234 89999999972 11110 000 11455666 88899999999886533
Q ss_pred CccccHHHHHHHHHH
Q psy17793 240 SVEENEAVIAWILHR 254 (397)
Q Consensus 240 ~~eEnE~vV~~~L~~ 254 (397)
+..+++.+..+.+.
T Consensus 194 -~~~~~~~~~~i~~t 207 (246)
T PF01564_consen 194 -PFLHPELFKSILKT 207 (246)
T ss_dssp -TTTTHHHHHHHHHH
T ss_pred -cccchHHHHHHHHH
Confidence 33445555544443
No 209
>KOG4300|consensus
Probab=98.08 E-value=5.1e-06 Score=76.36 Aligned_cols=125 Identities=17% Similarity=0.231 Sum_probs=86.2
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEE-EEEcccccccccchhhHHHh
Q psy17793 81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQ-THVYDSTRINTSSQIDIERM 159 (397)
Q Consensus 81 L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~-~~~~D~~~~~~~~~~d~~~~ 159 (397)
+.......||++|||||.---..-. .+..+|+++|.++.+-+.+.+.+++..-.++. ++.+|+.++.
T Consensus 72 ~gk~~K~~vLEvgcGtG~Nfkfy~~--~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~---------- 139 (252)
T KOG4300|consen 72 LGKSGKGDVLEVGCGTGANFKFYPW--KPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLP---------- 139 (252)
T ss_pred hcccCccceEEecccCCCCcccccC--CCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCc----------
Confidence 3333334689999999975433321 25678999999999999999988887656666 8889988874
Q ss_pred hhcccCccEEEEcC-CCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793 160 KLQKESFDRILLDA-PCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS 238 (397)
Q Consensus 160 ~~~~~~fD~Il~Dp-PCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS 238 (397)
...++++|.|++-- =||- +-+.+.|.+ ..++|||||++++..
T Consensus 140 ~l~d~s~DtVV~TlvLCSv------------------------e~~~k~L~e-----------~~rlLRpgG~iifiE-- 182 (252)
T KOG4300|consen 140 QLADGSYDTVVCTLVLCSV------------------------EDPVKQLNE-----------VRRLLRPGGRIIFIE-- 182 (252)
T ss_pred ccccCCeeeEEEEEEEecc------------------------CCHHHHHHH-----------HHHhcCCCcEEEEEe--
Confidence 24678999998621 1221 112667777 899999999999872
Q ss_pred CCccccHHHHHHHHHHC
Q psy17793 239 LSVEENEAVIAWILHRH 255 (397)
Q Consensus 239 ~~~eEnE~vV~~~L~~~ 255 (397)
|..+.-.-..+++++.
T Consensus 183 -Hva~~y~~~n~i~q~v 198 (252)
T KOG4300|consen 183 -HVAGEYGFWNRILQQV 198 (252)
T ss_pred -cccccchHHHHHHHHH
Confidence 3333333555666654
No 210
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=98.05 E-value=4.2e-05 Score=72.28 Aligned_cols=135 Identities=16% Similarity=0.238 Sum_probs=76.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhccc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE 164 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~ 164 (397)
.|.+||=+| -.-.+...+.+.+...+|+.+|+|+..++.+++.+++.|++ |++...|+++.+.. ...+
T Consensus 44 ~gk~il~lG--DDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~-i~~~~~DlR~~LP~---------~~~~ 111 (243)
T PF01861_consen 44 EGKRILFLG--DDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP-IEAVHYDLRDPLPE---------ELRG 111 (243)
T ss_dssp TT-EEEEES---TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS---T---------TTSS
T ss_pred cCCEEEEEc--CCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc-eEEEEecccccCCH---------HHhc
Confidence 578898555 56555545555566789999999999999999999999997 99999999876522 2357
Q ss_pred CccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCcc-c
Q psy17793 165 SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVE-E 243 (397)
Q Consensus 165 ~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~e-E 243 (397)
+||.++.|||.+ .+.+ .-+|.+ ++..||..|...|-..+..+. -
T Consensus 112 ~fD~f~TDPPyT-----------------~~G~-------~LFlsR-----------gi~~Lk~~g~~gy~~~~~~~~s~ 156 (243)
T PF01861_consen 112 KFDVFFTDPPYT-----------------PEGL-------KLFLSR-----------GIEALKGEGCAGYFGFTHKEASP 156 (243)
T ss_dssp -BSEEEE---SS-----------------HHHH-------HHHHHH-----------HHHTB-STT-EEEEEE-TTT--H
T ss_pred CCCEEEeCCCCC-----------------HHHH-------HHHHHH-----------HHHHhCCCCceEEEEEecCcCcH
Confidence 899999999943 2333 345666 888888777555654443321 1
Q ss_pred cH-HHHHHHHHHCCCcEEEecCccc
Q psy17793 244 NE-AVIAWILHRHPEVELVQTLPQL 267 (397)
Q Consensus 244 nE-~vV~~~L~~~~~~~l~~~~~~~ 267 (397)
.+ ..+++++-+. ++.+..+.+.+
T Consensus 157 ~~~~~~Q~~l~~~-gl~i~dii~~F 180 (243)
T PF01861_consen 157 DKWLEVQRFLLEM-GLVITDIIPDF 180 (243)
T ss_dssp HHHHHHHHHHHTS---EEEEEEEEE
T ss_pred HHHHHHHHHHHHC-CcCHHHHHhhh
Confidence 12 2466666665 67777766544
No 211
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.04 E-value=2.2e-05 Score=71.95 Aligned_cols=71 Identities=18% Similarity=0.197 Sum_probs=52.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793 84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK 163 (397)
Q Consensus 84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~ 163 (397)
.++++|||+|||+|..+..++... ...++++|+++.+++.+++ .+++++..|+.... +++..
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~-------~~~~~~~~d~~~~l---------~~~~~ 73 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVA-------RGVNVIQGDLDEGL---------EAFPD 73 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHH-------cCCeEEEEEhhhcc---------cccCC
Confidence 467899999999999998887642 4578999999999888754 23567777775421 11345
Q ss_pred cCccEEEEc
Q psy17793 164 ESFDRILLD 172 (397)
Q Consensus 164 ~~fD~Il~D 172 (397)
++||.|++.
T Consensus 74 ~sfD~Vi~~ 82 (194)
T TIGR02081 74 KSFDYVILS 82 (194)
T ss_pred CCcCEEEEh
Confidence 689999984
No 212
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.03 E-value=3.5e-05 Score=72.69 Aligned_cols=112 Identities=10% Similarity=0.031 Sum_probs=75.6
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHH------------HHhCCCcEEEEEcccccccc
Q psy17793 83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETI------------KKLQLSSIQTHVYDSTRINT 150 (397)
Q Consensus 83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~------------~~~g~~~v~~~~~D~~~~~~ 150 (397)
+.++.+||+.+||.|--..+||+. +-.|+|+|+|+.+++.+.+.. ++....+|++.++|+..+..
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~ 117 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPK 117 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCc
Confidence 345789999999999999999984 567999999999999985521 11222468999999988731
Q ss_pred cchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccch-HHHHHHHHHHHHHHHHHHhhhhccccccccccccCC
Q psy17793 151 SSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNL-DKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKD 229 (397)
Q Consensus 151 ~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~-~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpg 229 (397)
. .-..+.||.|.= =- .+..+ +..- .+..++ ..++|+||
T Consensus 118 ~--------~~~~~~fD~VyD-ra--------------~~~Alpp~~R-------~~Y~~~-----------l~~lL~pg 156 (226)
T PRK13256 118 I--------ANNLPVFDIWYD-RG--------------AYIALPNDLR-------TNYAKM-----------MLEVCSNN 156 (226)
T ss_pred c--------ccccCCcCeeee-eh--------------hHhcCCHHHH-------HHHHHH-----------HHHHhCCC
Confidence 0 001257999763 00 01111 1222 334445 77899999
Q ss_pred cEEEEEecC
Q psy17793 230 GILVYCTCS 238 (397)
Q Consensus 230 G~lvysTCS 238 (397)
|.++..|-.
T Consensus 157 g~llll~~~ 165 (226)
T PRK13256 157 TQILLLVME 165 (226)
T ss_pred cEEEEEEEe
Confidence 999888643
No 213
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.01 E-value=8.3e-06 Score=76.12 Aligned_cols=106 Identities=20% Similarity=0.276 Sum_probs=69.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhccc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE 164 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~ 164 (397)
+=.++||+|||+|-.+-.+-.+. .+++++|+|.+|++.+.+. |+-. .+...|+..+... ...+
T Consensus 125 ~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eK----g~YD-~L~~Aea~~Fl~~---------~~~e 187 (287)
T COG4976 125 PFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEK----GLYD-TLYVAEAVLFLED---------LTQE 187 (287)
T ss_pred ccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhc----cchH-HHHHHHHHHHhhh---------ccCC
Confidence 34699999999999998877763 5799999999999988764 2211 1222333322211 2347
Q ss_pred CccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCc
Q psy17793 165 SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSV 241 (397)
Q Consensus 165 ~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~ 241 (397)
+||+|.. ...+.-+-.+ ..++.. +..+|+|||.+.+|.-+...
T Consensus 188 r~DLi~A----------------------aDVl~YlG~L-e~~~~~-----------aa~~L~~gGlfaFSvE~l~~ 230 (287)
T COG4976 188 RFDLIVA----------------------ADVLPYLGAL-EGLFAG-----------AAGLLAPGGLFAFSVETLPD 230 (287)
T ss_pred cccchhh----------------------hhHHHhhcch-hhHHHH-----------HHHhcCCCceEEEEecccCC
Confidence 8999874 1222222222 455555 89999999999999655433
No 214
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.98 E-value=8.6e-05 Score=66.27 Aligned_cols=118 Identities=20% Similarity=0.213 Sum_probs=87.3
Q ss_pred HhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHH
Q psy17793 78 GHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIE 157 (397)
Q Consensus 78 ~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~ 157 (397)
+..++++.|.-||++|.|+|-+|-.+.+.......++++|.|++-...+.+.. ..+.++++|+..+.+ .
T Consensus 41 ~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-----p~~~ii~gda~~l~~------~ 109 (194)
T COG3963 41 ASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-----PGVNIINGDAFDLRT------T 109 (194)
T ss_pred HhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-----CCccccccchhhHHH------H
Confidence 34567888999999999999999999998767788999999999999887643 345688888876631 1
Q ss_pred HhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEec
Q psy17793 158 RMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC 237 (397)
Q Consensus 158 ~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTC 237 (397)
...+....||.|++-.| .++++-+. -.++|+. +...|..||.+|--|.
T Consensus 110 l~e~~gq~~D~viS~lP---------------ll~~P~~~------~iaile~-----------~~~rl~~gg~lvqftY 157 (194)
T COG3963 110 LGEHKGQFFDSVISGLP---------------LLNFPMHR------RIAILES-----------LLYRLPAGGPLVQFTY 157 (194)
T ss_pred HhhcCCCeeeeEEeccc---------------cccCcHHH------HHHHHHH-----------HHHhcCCCCeEEEEEe
Confidence 22345567999998666 12221111 1467777 8888999999998877
Q ss_pred C
Q psy17793 238 S 238 (397)
Q Consensus 238 S 238 (397)
+
T Consensus 158 g 158 (194)
T COG3963 158 G 158 (194)
T ss_pred c
Confidence 6
No 215
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.97 E-value=3.7e-05 Score=73.34 Aligned_cols=94 Identities=20% Similarity=0.199 Sum_probs=66.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhccc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE 164 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~ 164 (397)
...++||+|||-|+.|..++... .+|+|.|.|+.|...+++ -|.+ ++.. .++.. .+.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f---~~v~aTE~S~~Mr~rL~~----kg~~---vl~~--~~w~~-----------~~~ 150 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF---KEVYATEASPPMRWRLSK----KGFT---VLDI--DDWQQ-----------TDF 150 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc---ceEEeecCCHHHHHHHHh----CCCe---EEeh--hhhhc-----------cCC
Confidence 35689999999999999999976 469999999998666544 4553 2222 22210 235
Q ss_pred CccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793 165 SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC 235 (397)
Q Consensus 165 ~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys 235 (397)
+||+|.| -..+.+.... ..+|+. +.+.|+|+|+++.+
T Consensus 151 ~fDvIsc----------------------LNvLDRc~~P-~~LL~~-----------i~~~l~p~G~lilA 187 (265)
T PF05219_consen 151 KFDVISC----------------------LNVLDRCDRP-LTLLRD-----------IRRALKPNGRLILA 187 (265)
T ss_pred ceEEEee----------------------hhhhhccCCH-HHHHHH-----------HHHHhCCCCEEEEE
Confidence 7999987 1333333332 678888 89999999999987
No 216
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.96 E-value=2.4e-05 Score=73.50 Aligned_cols=77 Identities=21% Similarity=0.223 Sum_probs=56.4
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH------------hCCCcEEEEEcccccc
Q psy17793 81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKK------------LQLSSIQTHVYDSTRI 148 (397)
Q Consensus 81 L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~------------~g~~~v~~~~~D~~~~ 148 (397)
+...++.+||+.|||.|.-...+|+. +-.|+|+|+|+.+++.+.+.... ....+|++.++|+..+
T Consensus 33 l~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l 109 (218)
T PF05724_consen 33 LALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFEL 109 (218)
T ss_dssp HTTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTG
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccC
Confidence 34677889999999999999999984 56899999999999998432211 1123588999999887
Q ss_pred cccchhhHHHhhhcccCccEEE
Q psy17793 149 NTSSQIDIERMKLQKESFDRIL 170 (397)
Q Consensus 149 ~~~~~~d~~~~~~~~~~fD~Il 170 (397)
... ..++||.|.
T Consensus 110 ~~~----------~~g~fD~iy 121 (218)
T PF05724_consen 110 PPE----------DVGKFDLIY 121 (218)
T ss_dssp GGS----------CHHSEEEEE
T ss_pred Chh----------hcCCceEEE
Confidence 422 235799997
No 217
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.95 E-value=7.6e-05 Score=70.64 Aligned_cols=112 Identities=19% Similarity=0.141 Sum_probs=83.0
Q ss_pred hccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHH
Q psy17793 79 HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIER 158 (397)
Q Consensus 79 ~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~ 158 (397)
...+..+..+|+|+|.|.|..+..++... +..+++.+|. |..++.+++ .++|++..+|+...
T Consensus 94 ~~~d~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f~~---------- 155 (241)
T PF00891_consen 94 EAFDFSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFFDP---------- 155 (241)
T ss_dssp HHSTTTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH------TTTEEEEES-TTTC----------
T ss_pred ccccccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc------ccccccccccHHhh----------
Confidence 34456667799999999999999999885 5679999998 888888877 56899999999832
Q ss_pred hhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCC--cEEEEEe
Q psy17793 159 MKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKD--GILVYCT 236 (397)
Q Consensus 159 ~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpg--G~lvysT 236 (397)
++ . +|+|++ ..+.+.|+ ++.. .+||++ +.+.|+|| |+|+...
T Consensus 156 --~P-~-~D~~~l----------~~vLh~~~----d~~~-------~~iL~~-----------~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 156 --LP-V-ADVYLL----------RHVLHDWS----DEDC-------VKILRN-----------AAAALKPGKDGRLLIIE 199 (241)
T ss_dssp --CS-S-ESEEEE----------ESSGGGS-----HHHH-------HHHHHH-----------HHHHSEECTTEEEEEEE
T ss_pred --hc-c-ccceee----------ehhhhhcc----hHHH-------HHHHHH-----------HHHHhCCCCCCeEEEEe
Confidence 23 3 999998 35556666 3443 678888 99999999 9998886
Q ss_pred cCCCcccc
Q psy17793 237 CSLSVEEN 244 (397)
Q Consensus 237 CS~~~eEn 244 (397)
.-+.....
T Consensus 200 ~~~~~~~~ 207 (241)
T PF00891_consen 200 MVLPDDRT 207 (241)
T ss_dssp EEECSSSS
T ss_pred eccCCCCC
Confidence 65444333
No 218
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.93 E-value=0.0002 Score=69.41 Aligned_cols=130 Identities=18% Similarity=0.205 Sum_probs=90.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcE-EEEEcccccccccchhhHHHhhhcc
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLMND-TGTLIALDKSKPRVTKLEETIKKLQLSSI-QTHVYDSTRINTSSQIDIERMKLQK 163 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~~~-~~~V~avD~s~~rl~~l~~n~~~~g~~~v-~~~~~D~~~~~~~~~~d~~~~~~~~ 163 (397)
.-+|||++||+|.--+-+...... ...|.-.|.|+.-++..++.++..|+.+| ++.++|+.+...- .-..
T Consensus 136 pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l--------~~l~ 207 (311)
T PF12147_consen 136 PVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSL--------AALD 207 (311)
T ss_pred ceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHh--------hccC
Confidence 348999999999998877765443 36899999999999999999999999986 9999999765211 0112
Q ss_pred cCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCccc
Q psy17793 164 ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEE 243 (397)
Q Consensus 164 ~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~eE 243 (397)
...+++++ | |. ..-.. + .+.+ +..|.. ....+.|||+|+|..-.+||.
T Consensus 208 p~P~l~iV----s--GL----~ElF~--D-n~lv-------~~sl~g-----------l~~al~pgG~lIyTgQPwHPQ- 255 (311)
T PF12147_consen 208 PAPTLAIV----S--GL----YELFP--D-NDLV-------RRSLAG-----------LARALEPGGYLIYTGQPWHPQ- 255 (311)
T ss_pred CCCCEEEE----e--cc----hhhCC--c-HHHH-------HHHHHH-----------HHHHhCCCcEEEEcCCCCCcc-
Confidence 34688887 2 21 00000 0 1112 333444 677899999999976566763
Q ss_pred cHHHHHHHHHHCC
Q psy17793 244 NEAVIAWILHRHP 256 (397)
Q Consensus 244 nE~vV~~~L~~~~ 256 (397)
. +.|.++|..|.
T Consensus 256 l-e~IAr~LtsHr 267 (311)
T PF12147_consen 256 L-EMIARVLTSHR 267 (311)
T ss_pred h-HHHHHHHhccc
Confidence 3 37888998885
No 219
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.93 E-value=0.00029 Score=65.55 Aligned_cols=120 Identities=21% Similarity=0.266 Sum_probs=83.1
Q ss_pred EEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccchhhHHHhhhcccCcc
Q psy17793 89 VLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFD 167 (397)
Q Consensus 89 VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD 167 (397)
|.|+||--|.....|++. +...+++|+|+++.-++.++++++++|+.+ |+++.+|...... +.+..|
T Consensus 1 vaDIGtDHgyLpi~L~~~-~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~-----------~~e~~d 68 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKN-GKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLK-----------PGEDVD 68 (205)
T ss_dssp EEEET-STTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG-------------GGG---
T ss_pred CceeccchhHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccC-----------CCCCCC
Confidence 689999999999999884 234579999999999999999999999765 9999999876531 222378
Q ss_pred EEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCccccHHH
Q psy17793 168 RILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247 (397)
Q Consensus 168 ~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~eEnE~v 247 (397)
.|+. +|.| -. +-.+||++ ....++....|+.. |.-+...
T Consensus 69 ~ivI----AGMG--------------G~-------lI~~ILe~-----------~~~~~~~~~~lILq-----P~~~~~~ 107 (205)
T PF04816_consen 69 TIVI----AGMG--------------GE-------LIIEILEA-----------GPEKLSSAKRLILQ-----PNTHAYE 107 (205)
T ss_dssp EEEE----EEE---------------HH-------HHHHHHHH-----------TGGGGTT--EEEEE-----ESS-HHH
T ss_pred EEEE----ecCC--------------HH-------HHHHHHHh-----------hHHHhccCCeEEEe-----CCCChHH
Confidence 8776 2333 11 12678888 66666666677764 4557778
Q ss_pred HHHHHHHCCCcEEEe
Q psy17793 248 IAWILHRHPEVELVQ 262 (397)
Q Consensus 248 V~~~L~~~~~~~l~~ 262 (397)
++.+|.++ +|.++.
T Consensus 108 LR~~L~~~-gf~I~~ 121 (205)
T PF04816_consen 108 LRRWLYEN-GFEIID 121 (205)
T ss_dssp HHHHHHHT-TEEEEE
T ss_pred HHHHHHHC-CCEEEE
Confidence 99999988 687765
No 220
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.89 E-value=3.9e-05 Score=68.44 Aligned_cols=80 Identities=11% Similarity=0.119 Sum_probs=58.0
Q ss_pred EEEeCCHHHHHHHHHHHHHhC---CCcEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCc
Q psy17793 114 IALDKSKPRVTKLEETIKKLQ---LSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSF 190 (397)
Q Consensus 114 ~avD~s~~rl~~l~~n~~~~g---~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~ 190 (397)
+|+|+|+.+++.++++.+..+ ..+|+++.+|+.++. +..++||.|++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp-----------~~~~~fD~v~~~------------------ 51 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLP-----------FDDCEFDAVTMG------------------ 51 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCC-----------CCCCCeeEEEec------------------
Confidence 489999999999987765432 357999999998763 456789999961
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793 191 LNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS 238 (397)
Q Consensus 191 ~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS 238 (397)
..+..+.+. .+.|++ +.++|||||.++....+
T Consensus 52 ----~~l~~~~d~-~~~l~e-----------i~rvLkpGG~l~i~d~~ 83 (160)
T PLN02232 52 ----YGLRNVVDR-LRAMKE-----------MYRVLKPGSRVSILDFN 83 (160)
T ss_pred ----chhhcCCCH-HHHHHH-----------HHHHcCcCeEEEEEECC
Confidence 111111122 567788 99999999999887554
No 221
>KOG0820|consensus
Probab=97.87 E-value=6.1e-05 Score=72.02 Aligned_cols=82 Identities=20% Similarity=0.252 Sum_probs=68.3
Q ss_pred HhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccchhhH
Q psy17793 78 GHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDI 156 (397)
Q Consensus 78 ~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~ 156 (397)
+.-.++++++.||++|-|||+.|..+.+. +.+|+|+|+|+.++..+.++.+-....+ .+++.+|+.+..
T Consensus 51 ~~ka~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d------- 120 (315)
T KOG0820|consen 51 VEKADLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD------- 120 (315)
T ss_pred HhccCCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC-------
Confidence 34456789999999999999999988884 5799999999999999999887554433 899999998762
Q ss_pred HHhhhcccCccEEEEcCCC
Q psy17793 157 ERMKLQKESFDRILLDAPC 175 (397)
Q Consensus 157 ~~~~~~~~~fD~Il~DpPC 175 (397)
...||.++.|-|+
T Consensus 121 ------~P~fd~cVsNlPy 133 (315)
T KOG0820|consen 121 ------LPRFDGCVSNLPY 133 (315)
T ss_pred ------CcccceeeccCCc
Confidence 2369999999886
No 222
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.86 E-value=1.9e-05 Score=64.99 Aligned_cols=101 Identities=24% Similarity=0.327 Sum_probs=42.3
Q ss_pred EEEcCCCChHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccchhhHHHhhhcccCc
Q psy17793 90 LDMCAAPGNKLTHIALLMNDTG--TLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQIDIERMKLQKESF 166 (397)
Q Consensus 90 LDlcagpG~kt~~lA~~~~~~~--~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~~d~~~~~~~~~~f 166 (397)
|++|++.|..|..+++.+...+ +++++|..+. .+..++.+++.++. +++++.+|+..... .+..++|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~---------~~~~~~~ 70 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLP---------SLPDGPI 70 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHH---------HHHH--E
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHH---------HcCCCCE
Confidence 6889999999999998775554 7999999996 44455566656664 59999999876532 2334689
Q ss_pred cEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793 167 DRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC 235 (397)
Q Consensus 167 D~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys 235 (397)
|.|++|.. +..+.. ..-+.. +.+.|+|||.+++-
T Consensus 71 dli~iDg~-----------------H~~~~~-------~~dl~~-----------~~~~l~~ggviv~d 104 (106)
T PF13578_consen 71 DLIFIDGD-----------------HSYEAV-------LRDLEN-----------ALPRLAPGGVIVFD 104 (106)
T ss_dssp EEEEEES--------------------HHHH-------HHHHHH-----------HGGGEEEEEEEEEE
T ss_pred EEEEECCC-----------------CCHHHH-------HHHHHH-----------HHHHcCCCeEEEEe
Confidence 99999986 001111 334555 88899999999874
No 223
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.85 E-value=4e-05 Score=76.19 Aligned_cols=77 Identities=19% Similarity=0.192 Sum_probs=64.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccC
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKES 165 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~ 165 (397)
..+|+|.-+|+|.-++.+|.-.+.. +|+.+|+||.+.+.+++|++.+...+..+++.|+..+... ....
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~-~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~----------~~~~ 121 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVV-KVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHE----------LHRA 121 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCcc-EEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHh----------cCCC
Confidence 6799999999999999999876443 8999999999999999999999666777777888766422 2368
Q ss_pred ccEEEEcC
Q psy17793 166 FDRILLDA 173 (397)
Q Consensus 166 fD~Il~Dp 173 (397)
||+|=+||
T Consensus 122 fd~IDiDP 129 (380)
T COG1867 122 FDVIDIDP 129 (380)
T ss_pred ccEEecCC
Confidence 99999999
No 224
>KOG1975|consensus
Probab=97.78 E-value=0.00018 Score=70.38 Aligned_cols=137 Identities=19% Similarity=0.246 Sum_probs=89.3
Q ss_pred HHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC--C----cEEEEEccccc
Q psy17793 74 SILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL--S----SIQTHVYDSTR 147 (397)
Q Consensus 74 S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~--~----~v~~~~~D~~~ 147 (397)
|+|+-... ++++.++|||||-||-.+-.-. .+-+.++++||....++.++++.+.+.- + .+.++++|.+.
T Consensus 108 s~LI~~y~--~~~~~~~~LgCGKGGDLlKw~k--AgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~ 183 (389)
T KOG1975|consen 108 SVLINLYT--KRGDDVLDLGCGKGGDLLKWDK--AGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFK 183 (389)
T ss_pred HHHHHHHh--ccccccceeccCCcccHhHhhh--hcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccch
Confidence 55554443 6788999999999998875544 3557899999999999999988876532 1 26788888764
Q ss_pred ccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhcccccccccccc
Q psy17793 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLK 227 (397)
Q Consensus 148 ~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLk 227 (397)
-... | ..++...+||+|-| .+..+.+|. .-++ -+.+|.+ +.+.||
T Consensus 184 ~~l~---d--~~e~~dp~fDivSc-----------QF~~HYaFe----tee~----ar~~l~N-----------va~~Lk 228 (389)
T KOG1975|consen 184 ERLM---D--LLEFKDPRFDIVSC-----------QFAFHYAFE----TEES----ARIALRN-----------VAKCLK 228 (389)
T ss_pred hHHH---H--hccCCCCCcceeee-----------eeeEeeeec----cHHH----HHHHHHH-----------HHhhcC
Confidence 3210 1 01123344999876 333344321 1111 1677888 999999
Q ss_pred CCcEEEEEecCCCccccHHHHHHHHHHC
Q psy17793 228 KDGILVYCTCSLSVEENEAVIAWILHRH 255 (397)
Q Consensus 228 pgG~lvysTCS~~~eEnE~vV~~~L~~~ 255 (397)
|||.++=. --|.++|-+=|+..
T Consensus 229 pGG~FIgT------iPdsd~Ii~rlr~~ 250 (389)
T KOG1975|consen 229 PGGVFIGT------IPDSDVIIKRLRAG 250 (389)
T ss_pred CCcEEEEe------cCcHHHHHHHHHhc
Confidence 99999864 23455665555543
No 225
>KOG3010|consensus
Probab=97.72 E-value=0.00012 Score=68.88 Aligned_cols=133 Identities=14% Similarity=0.087 Sum_probs=75.1
Q ss_pred HHHHHhccCCCCCC-eEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEEccccccccc
Q psy17793 74 SILAGHYLDVQPGQ-KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL-SSIQTHVYDSTRINTS 151 (397)
Q Consensus 74 S~l~~~~L~~~~g~-~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~-~~v~~~~~D~~~~~~~ 151 (397)
+-+...+....++. .++|+|||+|-.+..+|.. -.+|+|+|+|+.+++.+++.-.-.-. ........+...+.
T Consensus 21 tdw~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~---~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~-- 95 (261)
T KOG3010|consen 21 TDWFKKIASRTEGHRLAWDVGTGNGQAARGIAEH---YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLL-- 95 (261)
T ss_pred HHHHHHHHhhCCCcceEEEeccCCCcchHHHHHh---hhhheeecCCHHHHHHhhcCCCcccccCCcccccccccccc--
Confidence 44444555555666 7899999999555556664 24799999999999977653211100 01122222222221
Q ss_pred chhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcE
Q psy17793 152 SQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGI 231 (397)
Q Consensus 152 ~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~ 231 (397)
-.++++|+|++ .+.+. +-++ .++.+. +.++||+.|-
T Consensus 96 ---------g~e~SVDlI~~----------------------Aqa~H-WFdl-e~fy~~-----------~~rvLRk~Gg 131 (261)
T KOG3010|consen 96 ---------GGEESVDLITA----------------------AQAVH-WFDL-ERFYKE-----------AYRVLRKDGG 131 (261)
T ss_pred ---------CCCcceeeehh----------------------hhhHH-hhch-HHHHHH-----------HHHHcCCCCC
Confidence 12578999987 12221 1122 455556 8899988773
Q ss_pred EEEEecCC-CccccHHHHHHHHHHC
Q psy17793 232 LVYCTCSL-SVEENEAVIAWILHRH 255 (397)
Q Consensus 232 lvysTCS~-~~eEnE~vV~~~L~~~ 255 (397)
++-.-|-. ...-+.++..-+++.+
T Consensus 132 ~iavW~Y~dd~v~~pE~dsv~~r~~ 156 (261)
T KOG3010|consen 132 LIAVWNYNDDFVDWPEFDSVMLRLY 156 (261)
T ss_pred EEEEEEccCCCcCCHHHHHHHHHHh
Confidence 33333333 4455666665555544
No 226
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.71 E-value=5.4e-05 Score=71.60 Aligned_cols=40 Identities=13% Similarity=0.131 Sum_probs=34.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHH
Q psy17793 84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTK 125 (397)
Q Consensus 84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~ 125 (397)
.+|..|||+|||||++|..++.. +..+|+|+|+++.++..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~--ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK--GAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHH
Confidence 36789999999999999999884 46789999999977664
No 227
>KOG1500|consensus
Probab=97.70 E-value=0.00021 Score=70.08 Aligned_cols=75 Identities=19% Similarity=0.131 Sum_probs=59.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccchhhHHHhhhcc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQIDIERMKLQK 163 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~~d~~~~~~~~ 163 (397)
.|..|||+|||+|..+...|.. +..+|+|+|.| ++.+.++..++.+.+. +|.++.+...++. .+
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA--GA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdie------------LP 241 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA--GAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIE------------LP 241 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh--CcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCcccccc------------Cc
Confidence 4779999999999999877764 67899999975 5788888888888764 4888777766552 35
Q ss_pred cCccEEEEcCC
Q psy17793 164 ESFDRILLDAP 174 (397)
Q Consensus 164 ~~fD~Il~DpP 174 (397)
+++|+|+..|-
T Consensus 242 Ek~DviISEPM 252 (517)
T KOG1500|consen 242 EKVDVIISEPM 252 (517)
T ss_pred hhccEEEeccc
Confidence 78999998774
No 228
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.69 E-value=0.00017 Score=69.51 Aligned_cols=98 Identities=16% Similarity=0.148 Sum_probs=73.0
Q ss_pred CcEEEechh-HHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEc
Q psy17793 65 SMGILQNLP-SILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVY 143 (397)
Q Consensus 65 g~~~~Qd~~-S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~ 143 (397)
|.-++.|+. ..-++..+++.+++.|||+|+|+|..|..++... .+|+++|+|+..++.+++... .-++++++.+
T Consensus 9 gQnFL~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~ 83 (262)
T PF00398_consen 9 GQNFLVDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA--SNPNVEVING 83 (262)
T ss_dssp TSSEEEHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT--TCSSEEEEES
T ss_pred CcCeeCCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh--hcccceeeec
Confidence 333444443 3445667788899999999999999999999863 799999999999999998766 3467999999
Q ss_pred ccccccccchhhHHHhhhcccCccEEEEcCCC
Q psy17793 144 DSTRINTSSQIDIERMKLQKESFDRILLDAPC 175 (397)
Q Consensus 144 D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPC 175 (397)
|+..+... .........|+.+.|+
T Consensus 84 D~l~~~~~--------~~~~~~~~~vv~NlPy 107 (262)
T PF00398_consen 84 DFLKWDLY--------DLLKNQPLLVVGNLPY 107 (262)
T ss_dssp -TTTSCGG--------GHCSSSEEEEEEEETG
T ss_pred chhccccH--------HhhcCCceEEEEEecc
Confidence 99987421 0112355788888883
No 229
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.65 E-value=0.00015 Score=63.35 Aligned_cols=115 Identities=17% Similarity=0.229 Sum_probs=70.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccchhhHHHhhhcc-cCccEEEEcCCCCCCCCCcccccccC
Q psy17793 112 TLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQK-ESFDRILLDAPCSGFGQRPMFYNANS 189 (397)
Q Consensus 112 ~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~~~-~~fD~Il~DpPCSg~G~~p~~~~~~s 189 (397)
+|+|+|+.+++++..++++++.++.+ |+++..+-..+.. +.+ +++|.++.| .|..|.......
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~----------~i~~~~v~~~iFN-----LGYLPggDk~i~ 65 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDE----------YIPEGPVDAAIFN-----LGYLPGGDKSIT 65 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGG----------T--S--EEEEEEE-----ESB-CTS-TTSB
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHh----------hCccCCcCEEEEE-----CCcCCCCCCCCC
Confidence 59999999999999999999999854 8888877666532 223 479999874 454444332222
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCcc--ccHHHHHHHHHHCC--CcEEE
Q psy17793 190 FLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVE--ENEAVIAWILHRHP--EVELV 261 (397)
Q Consensus 190 ~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~e--EnE~vV~~~L~~~~--~~~l~ 261 (397)
... +.-...|+. ++++|++||.++.....-|+. |..+.|..+++..+ .|...
T Consensus 66 ----T~~-----~TTl~Al~~-----------al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~ 121 (140)
T PF06962_consen 66 ----TKP-----ETTLKALEA-----------ALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVL 121 (140)
T ss_dssp ------H-----HHHHHHHHH-----------HHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEE
T ss_pred ----cCc-----HHHHHHHHH-----------HHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEE
Confidence 111 111445566 899999999999887777763 33345666776654 34443
No 230
>KOG1253|consensus
Probab=97.64 E-value=3e-05 Score=79.46 Aligned_cols=109 Identities=20% Similarity=0.327 Sum_probs=85.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccchhhHHHhhhc
Q psy17793 84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQ 162 (397)
Q Consensus 84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~~ 162 (397)
.++-+|||+-+|+|.-++..|..+++-..|+|+|.++..++..++|++.++.++ ++....|+..+... .+..
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~-------~~~~ 180 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYE-------HPMV 180 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHh-------cccc
Confidence 456699999999999999999999888899999999999999999999998876 77778888665311 0112
Q ss_pred ccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793 163 KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS 238 (397)
Q Consensus 163 ~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS 238 (397)
...||+|=+||= | .. ..+|+. |++.++.||.| +.|||
T Consensus 181 ~~~FDvIDLDPy--G--------------s~-----------s~FLDs-----------Avqav~~gGLL-~vT~T 217 (525)
T KOG1253|consen 181 AKFFDVIDLDPY--G--------------SP-----------SPFLDS-----------AVQAVRDGGLL-CVTCT 217 (525)
T ss_pred ccccceEecCCC--C--------------Cc-----------cHHHHH-----------HHHHhhcCCEE-EEEec
Confidence 368999999993 1 11 335666 88888888876 45776
No 231
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.63 E-value=0.00013 Score=71.07 Aligned_cols=115 Identities=17% Similarity=0.262 Sum_probs=84.7
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEEcccccccccchhhHH
Q psy17793 82 DVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ----LSSIQTHVYDSTRINTSSQIDIE 157 (397)
Q Consensus 82 ~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g----~~~v~~~~~D~~~~~~~~~~d~~ 157 (397)
.+.+ .+||=+|-|.|+.+-.++... +-.+++.||+|++-++.+++-+.... -++++++..|+.++...
T Consensus 74 h~~p-k~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~------ 145 (282)
T COG0421 74 HPNP-KRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRD------ 145 (282)
T ss_pred CCCC-CeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHh------
Confidence 3455 599999999999999888864 35789999999999999999887665 24689999999988643
Q ss_pred HhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEec
Q psy17793 158 RMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC 237 (397)
Q Consensus 158 ~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTC 237 (397)
...+||+|++|-- .| ... .+.+ .+.+..+. ..+.|+++|.++.-+=
T Consensus 146 ----~~~~fDvIi~D~t------dp-~gp-------~~~L-----ft~eFy~~-----------~~~~L~~~Gi~v~q~~ 191 (282)
T COG0421 146 ----CEEKFDVIIVDST------DP-VGP-------AEAL-----FTEEFYEG-----------CRRALKEDGIFVAQAG 191 (282)
T ss_pred ----CCCcCCEEEEcCC------CC-CCc-------cccc-----CCHHHHHH-----------HHHhcCCCcEEEEecC
Confidence 2347999999853 11 000 0111 12455666 8889999999998754
Q ss_pred C
Q psy17793 238 S 238 (397)
Q Consensus 238 S 238 (397)
|
T Consensus 192 ~ 192 (282)
T COG0421 192 S 192 (282)
T ss_pred C
Confidence 4
No 232
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.59 E-value=0.00024 Score=61.27 Aligned_cols=59 Identities=22% Similarity=0.162 Sum_probs=51.4
Q ss_pred eEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEccccc
Q psy17793 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147 (397)
Q Consensus 88 ~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~ 147 (397)
.|||+||+.|..+..++... +.++|+++|.++..++.++++++.+++.++.++......
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 48999999999999888764 456999999999999999999999998888888776653
No 233
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.59 E-value=0.00051 Score=63.63 Aligned_cols=137 Identities=23% Similarity=0.294 Sum_probs=89.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcE-EEEEcccccccccchhhHHHhhhccc
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSI-QTHVYDSTRINTSSQIDIERMKLQKE 164 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v-~~~~~D~~~~~~~~~~d~~~~~~~~~ 164 (397)
+.+||+++||+|-.+.++|..+. .-+-.-.|.++..+..++..+...+++|+ ..+..|+....-.. .........
T Consensus 26 ~~~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~---~~~~~~~~~ 101 (204)
T PF06080_consen 26 GTRVLEIASGTGQHAVYFAQALP-HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPW---ELPAPLSPE 101 (204)
T ss_pred CceEEEEcCCccHHHHHHHHHCC-CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCcc---ccccccCCC
Confidence 33699999999999999999984 56788899999999999999999998874 34556665431000 000011346
Q ss_pred CccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEE-EEEecC----C
Q psy17793 165 SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGIL-VYCTCS----L 239 (397)
Q Consensus 165 ~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~l-vysTCS----~ 239 (397)
.||.|++ . |+ -.+...... ..+++. +.++|++||.| +|---. +
T Consensus 102 ~~D~i~~----~---------------N~-lHI~p~~~~-~~lf~~-----------a~~~L~~gG~L~~YGPF~~~G~~ 149 (204)
T PF06080_consen 102 SFDAIFC----I---------------NM-LHISPWSAV-EGLFAG-----------AARLLKPGGLLFLYGPFNRDGKF 149 (204)
T ss_pred Ccceeee----h---------------hH-HHhcCHHHH-HHHHHH-----------HHHhCCCCCEEEEeCCcccCCEe
Confidence 8999996 0 11 223333333 567777 99999999986 554333 3
Q ss_pred CccccHHHHHHHHHHCCCc
Q psy17793 240 SVEENEAVIAWILHRHPEV 258 (397)
Q Consensus 240 ~~eEnE~vV~~~L~~~~~~ 258 (397)
+++-|++-=+++-.+.|++
T Consensus 150 ts~SN~~FD~sLr~rdp~~ 168 (204)
T PF06080_consen 150 TSESNAAFDASLRSRDPEW 168 (204)
T ss_pred CCcHHHHHHHHHhcCCCCc
Confidence 3455664444444444433
No 234
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.57 E-value=0.0011 Score=61.65 Aligned_cols=89 Identities=13% Similarity=0.157 Sum_probs=54.1
Q ss_pred hccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHH-------HhCC--CcEEEEEccccccc
Q psy17793 79 HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIK-------KLQL--SSIQTHVYDSTRIN 149 (397)
Q Consensus 79 ~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~-------~~g~--~~v~~~~~D~~~~~ 149 (397)
..+++.+++.++|+|||.|...+++|... +-.+.+|+|+.+...+.++.+.+ .+|. ..+.+..+|+.+..
T Consensus 36 ~~~~l~~~dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~ 114 (205)
T PF08123_consen 36 DELNLTPDDVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPD 114 (205)
T ss_dssp HHTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHH
T ss_pred HHhCCCCCCEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccH
Confidence 45678899999999999999988888665 45679999999999887765443 3344 34788888876542
Q ss_pred ccchhhHHHhhhcccCccEEEEcCCCC
Q psy17793 150 TSSQIDIERMKLQKESFDRILLDAPCS 176 (397)
Q Consensus 150 ~~~~~d~~~~~~~~~~fD~Il~DpPCS 176 (397)
.....+ ..-|+|++|-=|.
T Consensus 115 ------~~~~~~--s~AdvVf~Nn~~F 133 (205)
T PF08123_consen 115 ------FVKDIW--SDADVVFVNNTCF 133 (205)
T ss_dssp ------HHHHHG--HC-SEEEE--TTT
T ss_pred ------hHhhhh--cCCCEEEEecccc
Confidence 000111 3579999976553
No 235
>KOG3115|consensus
Probab=97.56 E-value=0.00051 Score=63.23 Aligned_cols=140 Identities=18% Similarity=0.239 Sum_probs=91.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC-------CCcEEEEEcccccccccchhhHHH
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ-------LSSIQTHVYDSTRINTSSQIDIER 158 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g-------~~~v~~~~~D~~~~~~~~~~d~~~ 158 (397)
.-.+.|+|||=||....++.+. +...|.|.||--+-.+..+++++.++ ..|+.+...++......
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~f-PdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn------- 132 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKF-PDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPN------- 132 (249)
T ss_pred cceEEeeccCccchhhhccccC-ccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccc-------
Confidence 3479999999999999999886 56789999999888899999998886 56788888887766422
Q ss_pred hhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793 159 MKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS 238 (397)
Q Consensus 159 ~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS 238 (397)
-|..+..+.++.=-| +|....+.. ...-++..++.+ -.-+|++||.++++|--
T Consensus 133 -~f~kgqLskmff~fp------dpHfk~~kh---------k~rii~~~l~~e-----------yay~l~~gg~~ytitDv 185 (249)
T KOG3115|consen 133 -FFEKGQLSKMFFLFP------DPHFKARKH---------KWRIITSTLLSE-----------YAYVLREGGILYTITDV 185 (249)
T ss_pred -hhhhcccccceeecC------ChhHhhhhc---------cceeechhHHHH-----------HHhhhhcCceEEEEeeH
Confidence 022222222221011 233322221 111133556666 67789999999988643
Q ss_pred CCccccHHHHHHHHHHCCCcEEEec
Q psy17793 239 LSVEENEAVIAWILHRHPEVELVQT 263 (397)
Q Consensus 239 ~~~eEnE~vV~~~L~~~~~~~l~~~ 263 (397)
+|--+.....+++||-++....
T Consensus 186 ---~elh~wm~~~~e~hplfe~lt~ 207 (249)
T KOG3115|consen 186 ---KELHEWMVKHLEEHPLFERLTE 207 (249)
T ss_pred ---HHHHHHHHHHHHhCcHhhhcch
Confidence 4444455567788886665543
No 236
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.53 E-value=0.00026 Score=70.35 Aligned_cols=72 Identities=17% Similarity=0.299 Sum_probs=53.5
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhc
Q psy17793 83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ 162 (397)
Q Consensus 83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~ 162 (397)
+.+|.++||+||+|||+|-.+++. +.+|+|||..+ +...+. .-.+|+....|...+.. .
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~-----l~~~L~--~~~~V~h~~~d~fr~~p-----------~ 267 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGP-----MAQSLM--DTGQVEHLRADGFKFRP-----------P 267 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechh-----cCHhhh--CCCCEEEEeccCcccCC-----------C
Confidence 368999999999999999999885 45999999554 222222 22468888888876631 1
Q ss_pred ccCccEEEEcCCC
Q psy17793 163 KESFDRILLDAPC 175 (397)
Q Consensus 163 ~~~fD~Il~DpPC 175 (397)
.+.+|.|++|.-|
T Consensus 268 ~~~vDwvVcDmve 280 (357)
T PRK11760 268 RKNVDWLVCDMVE 280 (357)
T ss_pred CCCCCEEEEeccc
Confidence 4689999999864
No 237
>KOG2361|consensus
Probab=97.50 E-value=0.00013 Score=68.83 Aligned_cols=111 Identities=19% Similarity=0.208 Sum_probs=73.8
Q ss_pred eEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccCc
Q psy17793 88 KVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESF 166 (397)
Q Consensus 88 ~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~f 166 (397)
+||++|||.|+...-+.+-.+ ++-.|+|+|-|+.+++.++++....- +++.....|++.-. ...+...+++
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~~~afv~Dlt~~~-------~~~~~~~~sv 145 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-SRVEAFVWDLTSPS-------LKEPPEEGSV 145 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-hhhcccceeccchh-------ccCCCCcCcc
Confidence 799999999999987776533 24789999999999999998866543 44666666665431 0112345778
Q ss_pred cEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793 167 DRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS 238 (397)
Q Consensus 167 D~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS 238 (397)
|.|.+ ....|-.. ++.. ...+.+ ..++|||||.|++...-
T Consensus 146 D~it~-------------IFvLSAi~-pek~-------~~a~~n-----------l~~llKPGG~llfrDYg 185 (264)
T KOG2361|consen 146 DIITL-------------IFVLSAIH-PEKM-------QSVIKN-----------LRTLLKPGGSLLFRDYG 185 (264)
T ss_pred ceEEE-------------EEEEeccC-hHHH-------HHHHHH-----------HHHHhCCCcEEEEeecc
Confidence 87765 12222011 1222 344556 78899999999987443
No 238
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.48 E-value=0.00019 Score=69.71 Aligned_cols=75 Identities=19% Similarity=0.212 Sum_probs=55.8
Q ss_pred eEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccCcc
Q psy17793 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFD 167 (397)
Q Consensus 88 ~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD 167 (397)
+|+|++||.|+.+.-+... +-..|+|+|+++.+++..+.|.... ++..|..++... .. ...+|
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~--G~~~v~a~e~~~~a~~~~~~N~~~~------~~~~Di~~~~~~--------~~-~~~~D 64 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA--GFEIVAANEIDKSAAETYEANFPNK------LIEGDITKIDEK--------DF-IPDID 64 (275)
T ss_pred cEEEEccCcchHHHHHHHc--CCEEEEEEeCCHHHHHHHHHhCCCC------CccCccccCchh--------hc-CCCCC
Confidence 6899999999998766653 3456899999999999998876421 456677665311 01 34699
Q ss_pred EEEEcCCCCCCC
Q psy17793 168 RILLDAPCSGFG 179 (397)
Q Consensus 168 ~Il~DpPCSg~G 179 (397)
+|+.+|||-+..
T Consensus 65 ~l~~gpPCq~fS 76 (275)
T cd00315 65 LLTGGFPCQPFS 76 (275)
T ss_pred EEEeCCCChhhh
Confidence 999999997654
No 239
>KOG1098|consensus
Probab=97.39 E-value=0.00052 Score=72.00 Aligned_cols=131 Identities=22% Similarity=0.204 Sum_probs=78.5
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhc
Q psy17793 83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ 162 (397)
Q Consensus 83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~ 162 (397)
++++..|||+|||||++....++.|+-++.|+|+|+-|-. -+.++..+..|.+.-. +.........
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik-----------p~~~c~t~v~dIttd~---cr~~l~k~l~ 107 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK-----------PIPNCDTLVEDITTDE---CRSKLRKILK 107 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc-----------cCCccchhhhhhhHHH---HHHHHHHHHH
Confidence 4678899999999999999999999888999999997643 2345555555554321 0000001112
Q ss_pred ccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCcc
Q psy17793 163 KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVE 242 (397)
Q Consensus 163 ~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~e 242 (397)
.-..|+||-|-- |.....|. .. +..|..|--+||+. |...|..||.+|-- +.+-
T Consensus 108 t~~advVLhDga-------pnVg~~w~----~D-----A~~q~~L~l~al~L-------A~~~l~~~g~fvtk---vfrs 161 (780)
T KOG1098|consen 108 TWKADVVLHDGA-------PNVGGNWV----QD-----AFQQACLTLRALKL-------ATEFLAKGGTFVTK---VFRS 161 (780)
T ss_pred hCCCcEEeecCC-------CccchhHH----HH-----HHHhhHHHHHHHHH-------HHHHHHhcCccccc---cccC
Confidence 235699998853 34433443 11 22333333333433 88899999997654 3334
Q ss_pred ccHHHHHHHHH
Q psy17793 243 ENEAVIAWILH 253 (397)
Q Consensus 243 EnE~vV~~~L~ 253 (397)
+.-.-+.|++.
T Consensus 162 ~dy~~ll~v~~ 172 (780)
T KOG1098|consen 162 EDYNGLLRVFG 172 (780)
T ss_pred CcchHHHHHHH
Confidence 44334445444
No 240
>PRK04148 hypothetical protein; Provisional
Probab=97.37 E-value=0.0027 Score=55.14 Aligned_cols=73 Identities=12% Similarity=0.054 Sum_probs=52.5
Q ss_pred hccCCCCCCeEEEEcCCCCh-HHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHH
Q psy17793 79 HYLDVQPGQKVLDMCAAPGN-KLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIE 157 (397)
Q Consensus 79 ~~L~~~~g~~VLDlcagpG~-kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~ 157 (397)
..+....+.+|||+|+|+|. .+..+++ .+..|+|+|+++.+++.++++ + +.++..|.++....
T Consensus 10 ~~~~~~~~~kileIG~GfG~~vA~~L~~---~G~~ViaIDi~~~aV~~a~~~----~---~~~v~dDlf~p~~~------ 73 (134)
T PRK04148 10 ENYEKGKNKKIVELGIGFYFKVAKKLKE---SGFDVIVIDINEKAVEKAKKL----G---LNAFVDDLFNPNLE------ 73 (134)
T ss_pred HhcccccCCEEEEEEecCCHHHHHHHHH---CCCEEEEEECCHHHHHHHHHh----C---CeEEECcCCCCCHH------
Confidence 34444456899999999996 6666665 356999999999988877664 3 56788888765311
Q ss_pred HhhhcccCccEEEE
Q psy17793 158 RMKLQKESFDRILL 171 (397)
Q Consensus 158 ~~~~~~~~fD~Il~ 171 (397)
.-+.+|+|..
T Consensus 74 ----~y~~a~liys 83 (134)
T PRK04148 74 ----IYKNAKLIYS 83 (134)
T ss_pred ----HHhcCCEEEE
Confidence 1256899984
No 241
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.37 E-value=0.00056 Score=64.72 Aligned_cols=87 Identities=25% Similarity=0.281 Sum_probs=58.1
Q ss_pred HHHHhccCCCCCC--eEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC----C-----CcEEEEEc
Q psy17793 75 ILAGHYLDVQPGQ--KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ----L-----SSIQTHVY 143 (397)
Q Consensus 75 ~l~~~~L~~~~g~--~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g----~-----~~v~~~~~ 143 (397)
..++.+..+++|. +|||+.+|-|.-++.+|.+ +++|+++|.||-....++.-++++. . .+|+++.+
T Consensus 63 ~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~---G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~ 139 (234)
T PF04445_consen 63 DPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASL---GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHG 139 (234)
T ss_dssp SHHHHHTT-BTTB---EEETT-TTSHHHHHHHHH---T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES
T ss_pred cHHHHHhCCCCCCCCEEEECCCcchHHHHHHHcc---CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcC
Confidence 3455667667664 9999999999999988874 4689999999999988887776652 1 25999999
Q ss_pred ccccccccchhhHHHhhhcccCccEEEEcCC
Q psy17793 144 DSTRINTSSQIDIERMKLQKESFDRILLDAP 174 (397)
Q Consensus 144 D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpP 174 (397)
|+..++. ....+||+|.+||-
T Consensus 140 d~~~~L~----------~~~~s~DVVY~DPM 160 (234)
T PF04445_consen 140 DALEYLR----------QPDNSFDVVYFDPM 160 (234)
T ss_dssp -CCCHCC----------CHSS--SEEEE--S
T ss_pred CHHHHHh----------hcCCCCCEEEECCC
Confidence 9988753 24578999999996
No 242
>KOG1227|consensus
Probab=97.35 E-value=7.2e-05 Score=72.36 Aligned_cols=107 Identities=14% Similarity=0.125 Sum_probs=75.0
Q ss_pred cCCCcEEEechhHHHHH-----h---ccCC-CCCCeEEEEcCCCChHHH-HHHHHcCCCcEEEEEeCCHHHHHHHHHHHH
Q psy17793 62 LDSSMGILQNLPSILAG-----H---YLDV-QPGQKVLDMCAAPGNKLT-HIALLMNDTGTLIALDKSKPRVTKLEETIK 131 (397)
Q Consensus 62 ~~~g~~~~Qd~~S~l~~-----~---~L~~-~~g~~VLDlcagpG~kt~-~lA~~~~~~~~V~avD~s~~rl~~l~~n~~ 131 (397)
..+|..+.=|+.-++.. + ++.. -.|+.|.||.||-|.+|+ .+.. .+...|+|+|.+|..++.|+++++
T Consensus 162 v~NGI~~~~d~t~~MFS~GN~~EK~Rv~~~sc~~eviVDLYAGIGYFTlpflV~--agAk~V~A~EwNp~svEaLrR~~~ 239 (351)
T KOG1227|consen 162 VQNGITQIWDPTKTMFSRGNIKEKKRVLNTSCDGEVIVDLYAGIGYFTLPFLVT--AGAKTVFACEWNPWSVEALRRNAE 239 (351)
T ss_pred hhcCeEEEechhhhhhhcCcHHHHHHhhhcccccchhhhhhcccceEEeehhhc--cCccEEEEEecCHHHHHHHHHHHH
Confidence 35676666676654421 1 1221 246899999999999998 4444 367799999999999999999999
Q ss_pred HhCCCc-EEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccC
Q psy17793 132 KLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANS 189 (397)
Q Consensus 132 ~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s 189 (397)
.+++.. ..++.+|-+.. .+....|+|.+ |..|.....|.
T Consensus 240 ~N~V~~r~~i~~gd~R~~------------~~~~~AdrVnL-------GLlPSse~~W~ 279 (351)
T KOG1227|consen 240 ANNVMDRCRITEGDNRNP------------KPRLRADRVNL-------GLLPSSEQGWP 279 (351)
T ss_pred hcchHHHHHhhhcccccc------------Cccccchheee-------ccccccccchH
Confidence 997643 34555665544 24467888876 66676666666
No 243
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.28 E-value=0.00029 Score=64.46 Aligned_cols=70 Identities=21% Similarity=0.173 Sum_probs=57.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhccc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE 164 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~ 164 (397)
.|.+|||+|+|+|--++..|. .+...|++.|+++.....++-|++.+|+ +|.+...|... .+.
T Consensus 79 rgkrVLd~gagsgLvaIAaa~--aGA~~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d~~g--------------~~~ 141 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAAR--AGAAEVVAADIDPWLEQAIRLNAAANGV-SILFTHADLIG--------------SPP 141 (218)
T ss_pred ccceeeecccccChHHHHHHH--hhhHHHHhcCCChHHHHHhhcchhhccc-eeEEeeccccC--------------CCc
Confidence 588999999999998865544 4678899999999999999999999996 57777777643 345
Q ss_pred CccEEEE
Q psy17793 165 SFDRILL 171 (397)
Q Consensus 165 ~fD~Il~ 171 (397)
.||+||+
T Consensus 142 ~~Dl~La 148 (218)
T COG3897 142 AFDLLLA 148 (218)
T ss_pred ceeEEEe
Confidence 7999997
No 244
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.20 E-value=0.00083 Score=65.69 Aligned_cols=106 Identities=20% Similarity=0.243 Sum_probs=68.0
Q ss_pred CeEEEEcCCCChHHHHHH----HHcC---CCcEEEEEeCCHHHHHHHHHHHH--------------Hh---------C--
Q psy17793 87 QKVLDMCAAPGNKLTHIA----LLMN---DTGTLIALDKSKPRVTKLEETIK--------------KL---------Q-- 134 (397)
Q Consensus 87 ~~VLDlcagpG~kt~~lA----~~~~---~~~~V~avD~s~~rl~~l~~n~~--------------~~---------g-- 134 (397)
-+|+.+||++|-=.-.|| +..+ ...+|+|.|+|+..++.+++..- ++ |
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 499999999995443333 3222 14679999999999999876521 00 0
Q ss_pred -C-----CcEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHH-HHHHHHH
Q psy17793 135 -L-----SSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY-ANIQKKL 207 (397)
Q Consensus 135 -~-----~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l-~~~Q~~l 207 (397)
+ +.|++...|..... ....+.||+|+| ...+..+ .+.|.++
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~----------~~~~~~fD~I~c----------------------RNvliyF~~~~~~~v 244 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQ----------WAVPGPFDAIFC----------------------RNVMIYFDKTTQERI 244 (287)
T ss_pred EEChHHHccCEEEcccCCCCC----------CccCCCcceeeH----------------------hhHHhcCCHHHHHHH
Confidence 0 12444455543310 012468999997 1222222 3456889
Q ss_pred HHHHhhhhccccccccccccCCcEEEEE
Q psy17793 208 LQAVYRFVSLFDWQGIPLLKKDGILVYC 235 (397)
Q Consensus 208 L~~~~~f~~~~~~~a~~lLkpgG~lvys 235 (397)
++. ..+.|+|||.|+..
T Consensus 245 l~~-----------l~~~L~pgG~L~lG 261 (287)
T PRK10611 245 LRR-----------FVPLLKPDGLLFAG 261 (287)
T ss_pred HHH-----------HHHHhCCCcEEEEe
Confidence 999 99999999999886
No 245
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.19 E-value=0.0016 Score=63.91 Aligned_cols=86 Identities=15% Similarity=0.170 Sum_probs=50.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh-CCCc-EEEEEcccc-cccccchhhHHHhhhc
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKL-QLSS-IQTHVYDST-RINTSSQIDIERMKLQ 162 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~-g~~~-v~~~~~D~~-~~~~~~~~d~~~~~~~ 162 (397)
.-++||+|+|.-..=-.|+..+ .+.+++|.|+|+..++.+++|++++ ++.+ |+++...-. .+... ....
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~-~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~-------i~~~ 174 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKL-YGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDG-------IIQP 174 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHH-H--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTT-------STT-
T ss_pred ceEeecCCccHHHHHHHHhhhh-cCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchh-------hhcc
Confidence 3479999999887755555554 3689999999999999999999999 8864 877655322 22111 0012
Q ss_pred ccCccEEEEcCCCCCCC
Q psy17793 163 KESFDRILLDAPCSGFG 179 (397)
Q Consensus 163 ~~~fD~Il~DpPCSg~G 179 (397)
.+.||..+||||--.+.
T Consensus 175 ~e~~dftmCNPPFy~s~ 191 (299)
T PF05971_consen 175 NERFDFTMCNPPFYSSQ 191 (299)
T ss_dssp -S-EEEEEE-----SS-
T ss_pred cceeeEEecCCccccCh
Confidence 35899999999986654
No 246
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=97.16 E-value=0.014 Score=54.35 Aligned_cols=63 Identities=21% Similarity=0.242 Sum_probs=44.5
Q ss_pred EechhHHHHHhccCCCCC---CeEEEEcCCCChHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHH
Q psy17793 69 LQNLPSILAGHYLDVQPG---QKVLDMCAAPGNKLTHIALLMNDT-GTLIALDKSKPRVTKLEETIK 131 (397)
Q Consensus 69 ~Qd~~S~l~~~~L~~~~g---~~VLDlcagpG~kt~~lA~~~~~~-~~V~avD~s~~rl~~l~~n~~ 131 (397)
.-..+|-+....+...++ -.++|-|||.|...+.++-+-.+. ..|+|.|+|+..++.+++|+.
T Consensus 32 PVRLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 32 PVRLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp -HHHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence 445667666666554432 389999999999998777664322 469999999999998887775
No 247
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=97.15 E-value=0.0043 Score=59.69 Aligned_cols=79 Identities=16% Similarity=0.249 Sum_probs=62.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhccc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE 164 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~ 164 (397)
.|..|+=+| ---.|...+++.+-..+|..+|+|..-+.-..+-++++|++||+.+..|.++..+. ...+
T Consensus 152 ~gK~I~vvG--DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe---------~~~~ 220 (354)
T COG1568 152 EGKEIFVVG--DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPE---------DLKR 220 (354)
T ss_pred CCCeEEEEc--CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChH---------HHHh
Confidence 467788887 33444434445455678999999999999999999999999999999999987532 2357
Q ss_pred CccEEEEcCC
Q psy17793 165 SFDRILLDAP 174 (397)
Q Consensus 165 ~fD~Il~DpP 174 (397)
+||+++.|||
T Consensus 221 kFDvfiTDPp 230 (354)
T COG1568 221 KFDVFITDPP 230 (354)
T ss_pred hCCeeecCch
Confidence 8999999999
No 248
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.15 E-value=0.0019 Score=60.95 Aligned_cols=75 Identities=16% Similarity=0.154 Sum_probs=50.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccchhhHHHhhhc
Q psy17793 84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQ 162 (397)
Q Consensus 84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~~ 162 (397)
-+|..+||+||.+||+|-.+.+. +..+|+|+|.....+..--+ .. .+ +..-..|++.+... .+
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~--gAk~VyavDVG~~Ql~~kLR----~d-~rV~~~E~tN~r~l~~~--------~~- 141 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQR--GAKHVYAVDVGYGQLHWKLR----ND-PRVIVLERTNVRYLTPE--------DF- 141 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHc--CCcEEEEEEccCCccCHhHh----cC-CcEEEEecCChhhCCHH--------Hc-
Confidence 35889999999999999988874 67899999998755433111 11 22 33344555554211 12
Q ss_pred ccCccEEEEcCC
Q psy17793 163 KESFDRILLDAP 174 (397)
Q Consensus 163 ~~~fD~Il~DpP 174 (397)
.+..|.|++|.+
T Consensus 142 ~~~~d~~v~DvS 153 (245)
T COG1189 142 TEKPDLIVIDVS 153 (245)
T ss_pred ccCCCeEEEEee
Confidence 347899999986
No 249
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.14 E-value=0.0034 Score=62.32 Aligned_cols=65 Identities=11% Similarity=0.098 Sum_probs=51.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHcCC---CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEE--EEcccccc
Q psy17793 84 QPGQKVLDMCAAPGNKLTHIALLMND---TGTLIALDKSKPRVTKLEETIKKLQLSSIQT--HVYDSTRI 148 (397)
Q Consensus 84 ~~g~~VLDlcagpG~kt~~lA~~~~~---~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~--~~~D~~~~ 148 (397)
.++..++|+|||.|.||..+.+.+.. ..+.+++|+|...++.+.+++..-..+.+++ +++|....
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~ 144 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG 144 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH
Confidence 46678999999999999988876642 3568999999999999999998444555544 78887654
No 250
>PRK00536 speE spermidine synthase; Provisional
Probab=97.11 E-value=0.0056 Score=59.11 Aligned_cols=72 Identities=8% Similarity=0.014 Sum_probs=52.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC--CC--cEEEEEcccccccccchhhHHHhh
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ--LS--SIQTHVYDSTRINTSSQIDIERMK 160 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g--~~--~v~~~~~D~~~~~~~~~~d~~~~~ 160 (397)
.-++||=+|.|-|+....+++. + .+|+-||+|+..++.+++-+-.+. ++ +++++.. .. .
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh--~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~----~~-~--------- 134 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKY--D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ----LL-D--------- 134 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCc--C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh----hh-h---------
Confidence 3479999999999999888874 3 499999999999999998555432 33 3555541 11 0
Q ss_pred hcccCccEEEEcC
Q psy17793 161 LQKESFDRILLDA 173 (397)
Q Consensus 161 ~~~~~fD~Il~Dp 173 (397)
...++||+|++|-
T Consensus 135 ~~~~~fDVIIvDs 147 (262)
T PRK00536 135 LDIKKYDLIICLQ 147 (262)
T ss_pred ccCCcCCEEEEcC
Confidence 1235799999993
No 251
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.10 E-value=0.002 Score=62.60 Aligned_cols=105 Identities=14% Similarity=0.107 Sum_probs=62.5
Q ss_pred CeEEEEcCCCChHHH-HHHHHcCCCcEEEEEeCCHHHHHHHHHHHH-HhCCC-cEEEEEcccccccccchhhHHHhhhcc
Q psy17793 87 QKVLDMCAAPGNKLT-HIALLMNDTGTLIALDKSKPRVTKLEETIK-KLQLS-SIQTHVYDSTRINTSSQIDIERMKLQK 163 (397)
Q Consensus 87 ~~VLDlcagpG~kt~-~lA~~~~~~~~V~avD~s~~rl~~l~~n~~-~~g~~-~v~~~~~D~~~~~~~~~~d~~~~~~~~ 163 (397)
.+|+=+|+||==.|. .++.....+..|+++|+|+.+.+.+++.++ ..|+. .+++.++|...... .-
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~-----------dl 190 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTY-----------DL 190 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-G-----------G-
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccc-----------cc
Confidence 499999999876665 445444456789999999999999999888 55654 49999999876531 22
Q ss_pred cCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793 164 ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC 235 (397)
Q Consensus 164 ~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys 235 (397)
..||+|++-+- +..-++.-.++|.+ ..+.++||..|+|=
T Consensus 191 ~~~DvV~lAal----------------------Vg~~~e~K~~Il~~-----------l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 191 KEYDVVFLAAL----------------------VGMDAEPKEEILEH-----------LAKHMAPGARLVVR 229 (276)
T ss_dssp ---SEEEE-TT-----------------------S----SHHHHHHH-----------HHHHS-TTSEEEEE
T ss_pred ccCCEEEEhhh----------------------cccccchHHHHHHH-----------HHhhCCCCcEEEEe
Confidence 57999998331 10001111678888 88899999999886
No 252
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.02 E-value=0.0017 Score=62.77 Aligned_cols=107 Identities=16% Similarity=0.109 Sum_probs=68.1
Q ss_pred CCeEEEEcCCCCh----HHHHHHHHcCC----CcEEEEEeCCHHHHHHHHHHHHH-----hCCC----------------
Q psy17793 86 GQKVLDMCAAPGN----KLTHIALLMND----TGTLIALDKSKPRVTKLEETIKK-----LQLS---------------- 136 (397)
Q Consensus 86 g~~VLDlcagpG~----kt~~lA~~~~~----~~~V~avD~s~~rl~~l~~n~~~-----~g~~---------------- 136 (397)
.-+|+-++|++|- .++.+.+..+. ..+|+|.|+|...++.|+.-.-. -+++
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 3489999999994 45455555432 57899999999999988643211 1111
Q ss_pred --------cEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHH
Q psy17793 137 --------SIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLL 208 (397)
Q Consensus 137 --------~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL 208 (397)
.|.+...|...- .+ ..+.||+|+| | ++ -+---.+.|.+++
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~----------~~-~~~~fD~IfC---------R-NV-----------LIYFd~~~q~~il 224 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDD----------SP-FLGKFDLIFC---------R-NV-----------LIYFDEETQERIL 224 (268)
T ss_pred EEChHHhcccEEeecCCCCC----------cc-ccCCCCEEEE---------c-ce-----------EEeeCHHHHHHHH
Confidence 133333333221 11 3467999998 0 11 1111234678899
Q ss_pred HHHhhhhccccccccccccCCcEEEEE
Q psy17793 209 QAVYRFVSLFDWQGIPLLKKDGILVYC 235 (397)
Q Consensus 209 ~~~~~f~~~~~~~a~~lLkpgG~lvys 235 (397)
.. ....|+|||.|+.-
T Consensus 225 ~~-----------f~~~L~~gG~LflG 240 (268)
T COG1352 225 RR-----------FADSLKPGGLLFLG 240 (268)
T ss_pred HH-----------HHHHhCCCCEEEEc
Confidence 99 88999999999985
No 253
>KOG1709|consensus
Probab=96.97 E-value=0.0055 Score=57.05 Aligned_cols=106 Identities=18% Similarity=0.210 Sum_probs=72.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793 84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK 163 (397)
Q Consensus 84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~ 163 (397)
..|.+||.+|-|-|...+.+-+. +..+=+-+|.++.-++.++...-+-. .||.+..+-..+... ...+
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~--~p~~H~IiE~hp~V~krmr~~gw~ek-~nViil~g~WeDvl~---------~L~d 167 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEA--PPDEHWIIEAHPDVLKRMRDWGWREK-ENVIILEGRWEDVLN---------TLPD 167 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhc--CCcceEEEecCHHHHHHHHhcccccc-cceEEEecchHhhhc---------cccc
Confidence 57889999999999999888775 33445568999999988877643221 456665543333221 1355
Q ss_pred cCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793 164 ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC 235 (397)
Q Consensus 164 ~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys 235 (397)
+.||.|+-|.= + ...+++ +.+-++ +.++|||+|.+.|.
T Consensus 168 ~~FDGI~yDTy--------------~--e~yEdl-------~~~hqh-----------~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 168 KHFDGIYYDTY--------------S--ELYEDL-------RHFHQH-----------VVRLLKPEGVFSYF 205 (271)
T ss_pred cCcceeEeech--------------h--hHHHHH-------HHHHHH-----------HhhhcCCCceEEEe
Confidence 67999998751 0 012333 445557 99999999999886
No 254
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=96.97 E-value=0.0037 Score=65.85 Aligned_cols=107 Identities=10% Similarity=0.059 Sum_probs=73.6
Q ss_pred CCCcEEEechhHHHHHhccCCC--CCCeEEEEcCCCChHHHHHHHHcC---CCcEEEEEeCCHHHHHHHHHHHHHhCCC-
Q psy17793 63 DSSMGILQNLPSILAGHYLDVQ--PGQKVLDMCAAPGNKLTHIALLMN---DTGTLIALDKSKPRVTKLEETIKKLQLS- 136 (397)
Q Consensus 63 ~~g~~~~Qd~~S~l~~~~L~~~--~g~~VLDlcagpG~kt~~lA~~~~---~~~~V~avD~s~~rl~~l~~n~~~~g~~- 136 (397)
..|.++....-+.+.+.++.+. ++..|.|+|||+|+........+. ....+++.|........++.|+.-.+..
T Consensus 193 ~~g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~ 272 (501)
T TIGR00497 193 SGGEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDY 272 (501)
T ss_pred cCceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCc
Confidence 4567777766677777777764 678999999999998876544332 1246899999999999999988776653
Q ss_pred -cEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCC
Q psy17793 137 -SIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGF 178 (397)
Q Consensus 137 -~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~ 178 (397)
......+|..... | ......||.|++|||.+..
T Consensus 273 ~t~~~~~~dtl~~~-----d----~~~~~~~D~v~~NpPf~~~ 306 (501)
T TIGR00497 273 ANFNIINADTLTTK-----E----WENENGFEVVVSNPPYSIS 306 (501)
T ss_pred cccCcccCCcCCCc-----c----ccccccCCEEeecCCcccc
Confidence 2333344433211 0 0123469999999998763
No 255
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.94 E-value=0.0025 Score=55.53 Aligned_cols=51 Identities=18% Similarity=0.241 Sum_probs=45.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHc---CCCcEEEEEeCCHHHHHHHHHHHHHhC
Q psy17793 84 QPGQKVLDMCAAPGNKLTHIALLM---NDTGTLIALDKSKPRVTKLEETIKKLQ 134 (397)
Q Consensus 84 ~~g~~VLDlcagpG~kt~~lA~~~---~~~~~V~avD~s~~rl~~l~~n~~~~g 134 (397)
.+...|+|+|||-|..+..++.++ ....+|+++|.++...+.+.++.++.+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG 77 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence 677899999999999999999944 246799999999999999999999888
No 256
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=96.92 E-value=0.0021 Score=59.40 Aligned_cols=108 Identities=18% Similarity=0.161 Sum_probs=61.6
Q ss_pred CeEEEEcCCCChHHHHHHHHcC--------CCcEEEEEeCCHHHHHHHHHHH--------------HHh-----C----C
Q psy17793 87 QKVLDMCAAPGNKLTHIALLMN--------DTGTLIALDKSKPRVTKLEETI--------------KKL-----Q----L 135 (397)
Q Consensus 87 ~~VLDlcagpG~kt~~lA~~~~--------~~~~V~avD~s~~rl~~l~~n~--------------~~~-----g----~ 135 (397)
-+|+.+||++|-=+-.||-++. ...+|+|.|+|+..++.+++-. +++ | +
T Consensus 33 lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v 112 (196)
T PF01739_consen 33 LRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYRV 112 (196)
T ss_dssp EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTTE
T ss_pred eEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCceeE
Confidence 4899999999954433333221 1358999999999999876422 111 0 0
Q ss_pred -----CcEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHH
Q psy17793 136 -----SSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQA 210 (397)
Q Consensus 136 -----~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~ 210 (397)
++|++...|..+. ....+.||+|+| | ++. +---.+.|.++++.
T Consensus 113 ~~~lr~~V~F~~~NL~~~-----------~~~~~~fD~I~C---------R-NVl-----------IYF~~~~~~~vl~~ 160 (196)
T PF01739_consen 113 KPELRKMVRFRRHNLLDP-----------DPPFGRFDLIFC---------R-NVL-----------IYFDPETQQRVLRR 160 (196)
T ss_dssp -HHHHTTEEEEE--TT-S-----------------EEEEEE-----------SSG-----------GGS-HHHHHHHHHH
T ss_pred ChHHcCceEEEecccCCC-----------CcccCCccEEEe---------c-CEE-----------EEeCHHHHHHHHHH
Confidence 1356666665541 013468999998 0 110 11112456888999
Q ss_pred HhhhhccccccccccccCCcEEEEEec
Q psy17793 211 VYRFVSLFDWQGIPLLKKDGILVYCTC 237 (397)
Q Consensus 211 ~~~f~~~~~~~a~~lLkpgG~lvysTC 237 (397)
..+.|+|||.|+....
T Consensus 161 -----------l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 161 -----------LHRSLKPGGYLFLGHS 176 (196)
T ss_dssp -----------HGGGEEEEEEEEE-TT
T ss_pred -----------HHHHcCCCCEEEEecC
Confidence 9999999999998743
No 257
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.85 E-value=0.015 Score=58.09 Aligned_cols=80 Identities=14% Similarity=0.236 Sum_probs=61.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHH--HHHhC---C--CcEEEEEcccccccccchhhH
Q psy17793 84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEET--IKKLQ---L--SSIQTHVYDSTRINTSSQIDI 156 (397)
Q Consensus 84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n--~~~~g---~--~~v~~~~~D~~~~~~~~~~d~ 156 (397)
+.-++||=+|.|-|--...+.+. ..-.+|+-+|.||++++.++++ +.+.+ + ++++++..|+.++.+.
T Consensus 288 ~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~----- 361 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRT----- 361 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHh-----
Confidence 45579999999999877777664 3367999999999999999844 34333 2 2489999999988633
Q ss_pred HHhhhcccCccEEEEcCC
Q psy17793 157 ERMKLQKESFDRILLDAP 174 (397)
Q Consensus 157 ~~~~~~~~~fD~Il~DpP 174 (397)
....||.|++|-|
T Consensus 362 -----a~~~fD~vIVDl~ 374 (508)
T COG4262 362 -----AADMFDVVIVDLP 374 (508)
T ss_pred -----hcccccEEEEeCC
Confidence 3458999999988
No 258
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.79 E-value=0.0017 Score=60.32 Aligned_cols=82 Identities=18% Similarity=0.206 Sum_probs=44.9
Q ss_pred CcEEEechhHHHHHhcc--CCCCCCeEEEEcCCCChHHHHHHHHc---CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEE
Q psy17793 65 SMGILQNLPSILAGHYL--DVQPGQKVLDMCAAPGNKLTHIALLM---NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQ 139 (397)
Q Consensus 65 g~~~~Qd~~S~l~~~~L--~~~~g~~VLDlcagpG~kt~~lA~~~---~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~ 139 (397)
|.-++|.+.-+++-..| +.+| +.|+++|.+-||-+...|+++ ++.++|+++|++............-+ .++|+
T Consensus 11 G~pi~q~P~Dm~~~qeli~~~kP-d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~-~~rI~ 88 (206)
T PF04989_consen 11 GRPIIQYPQDMVAYQELIWELKP-DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPM-SPRIT 88 (206)
T ss_dssp TEEESS-HHHHHHHHHHHHHH---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG-----TTEE
T ss_pred CeehhcCHHHHHHHHHHHHHhCC-CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccc-cCceE
Confidence 44566776655543332 2344 589999999999999888654 46789999999654433221111111 15699
Q ss_pred EEEcccccc
Q psy17793 140 THVYDSTRI 148 (397)
Q Consensus 140 ~~~~D~~~~ 148 (397)
++.+|..+.
T Consensus 89 ~i~Gds~d~ 97 (206)
T PF04989_consen 89 FIQGDSIDP 97 (206)
T ss_dssp EEES-SSST
T ss_pred EEECCCCCH
Confidence 999998765
No 259
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=96.73 E-value=0.042 Score=49.48 Aligned_cols=141 Identities=20% Similarity=0.274 Sum_probs=84.8
Q ss_pred CCChHHHHHHHHcCCCcEEEEE--eCCHHHHH---HHHHHHHHhCCCc-EEEEEcccccccccchhhHHHhhhcccCccE
Q psy17793 95 APGNKLTHIALLMNDTGTLIAL--DKSKPRVT---KLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDR 168 (397)
Q Consensus 95 gpG~kt~~lA~~~~~~~~V~av--D~s~~rl~---~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~ 168 (397)
|-=+++..+|...+....|+|. |......+ .+.+|++.+.-.+ ......|++++... .......||+
T Consensus 6 GdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~-------~~~~~~~FDr 78 (166)
T PF10354_consen 6 GDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKH-------FRLKNQRFDR 78 (166)
T ss_pred cchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCccccc-------ccccCCcCCE
Confidence 4445566666665434566655 44433333 2346666653223 23456788877532 1224578999
Q ss_pred EEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCccccHHHH
Q psy17793 169 ILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVI 248 (397)
Q Consensus 169 Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~eEnE~vV 248 (397)
|+-+=|+.|.|.... ...+.....+-..++.+ |.++|+++|.+..+-|.-.|- +...|
T Consensus 79 IiFNFPH~G~~~~~~----------~~~i~~nr~Ll~~Ff~S-----------a~~~L~~~G~IhVTl~~~~py-~~W~i 136 (166)
T PF10354_consen 79 IIFNFPHVGGGSEDG----------KRNIRLNRELLRGFFKS-----------ASQLLKPDGEIHVTLKDGQPY-DSWNI 136 (166)
T ss_pred EEEeCCCCCCCccch----------hHHHHHHHHHHHHHHHH-----------HHHhcCCCCEEEEEeCCCCCC-ccccH
Confidence 999999998543211 23343333333556666 999999999999998886664 45556
Q ss_pred HHHHHHCCCcEEEecCc
Q psy17793 249 AWILHRHPEVELVQTLP 265 (397)
Q Consensus 249 ~~~L~~~~~~~l~~~~~ 265 (397)
..+.++. ++.+....+
T Consensus 137 ~~lA~~~-gl~l~~~~~ 152 (166)
T PF10354_consen 137 EELAAEA-GLVLVRKVP 152 (166)
T ss_pred HHHHHhc-CCEEEEEec
Confidence 6555554 677766543
No 260
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=96.69 E-value=0.0041 Score=60.77 Aligned_cols=74 Identities=22% Similarity=0.325 Sum_probs=53.4
Q ss_pred eEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccCcc
Q psy17793 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFD 167 (397)
Q Consensus 88 ~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD 167 (397)
+++|++||-||.+.-+-.. +--.|.|+|+++.+.+..+.|.. .....|.+.+... .++. .+|
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a--g~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~--------~l~~-~~D 63 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA--GFEVVWAVEIDPDACETYKANFP-------EVICGDITEIDPS--------DLPK-DVD 63 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT--TEEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHH--------HHHH-T-S
T ss_pred cEEEEccCccHHHHHHHhc--CcEEEEEeecCHHHHHhhhhccc-------ccccccccccccc--------cccc-cce
Confidence 6899999999999766653 33468999999999999998875 6778888877321 2333 599
Q ss_pred EEEEcCCCCCCC
Q psy17793 168 RILLDAPCSGFG 179 (397)
Q Consensus 168 ~Il~DpPCSg~G 179 (397)
+++.=|||.+..
T Consensus 64 ~l~ggpPCQ~fS 75 (335)
T PF00145_consen 64 LLIGGPPCQGFS 75 (335)
T ss_dssp EEEEE---TTTS
T ss_pred EEEeccCCceEe
Confidence 999999998754
No 261
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=96.64 E-value=0.01 Score=55.46 Aligned_cols=104 Identities=15% Similarity=0.137 Sum_probs=66.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccC
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKES 165 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~ 165 (397)
-.+.||+|||-|-.|-++.. +--.+|-.+|..+.-++.+++.+...+-.-.++++.-..++.. ...+
T Consensus 56 ~~~alDcGAGIGRVTk~lLl--~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P-----------~~~~ 122 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLL--PVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTP-----------EEGK 122 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCC--CC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG---------------TT-
T ss_pred cceEEecccccchhHHHHHH--HhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccC-----------CCCc
Confidence 46999999999999987744 3356899999999999999976655222235666666655521 2358
Q ss_pred ccEEEEcCCCCCCCCCcccccccCccch-HHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793 166 FDRILLDAPCSGFGQRPMFYNANSFLNL-DKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC 235 (397)
Q Consensus 166 fD~Il~DpPCSg~G~~p~~~~~~s~~~~-~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys 235 (397)
||+|-+ .|-..++ .+++ .++|.+ ..+.|+|+|.||.-
T Consensus 123 YDlIW~---------------QW~lghLTD~dl-------v~fL~R-----------Ck~~L~~~G~IvvK 160 (218)
T PF05891_consen 123 YDLIWI---------------QWCLGHLTDEDL-------VAFLKR-----------CKQALKPNGVIVVK 160 (218)
T ss_dssp EEEEEE---------------ES-GGGS-HHHH-------HHHHHH-----------HHHHEEEEEEEEEE
T ss_pred EeEEEe---------------hHhhccCCHHHH-------HHHHHH-----------HHHhCcCCcEEEEE
Confidence 999976 2221122 2322 456777 88899999999875
No 262
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.64 E-value=0.018 Score=47.06 Aligned_cols=109 Identities=19% Similarity=0.127 Sum_probs=67.7
Q ss_pred EEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc-cCcc
Q psy17793 89 VLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK-ESFD 167 (397)
Q Consensus 89 VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~-~~fD 167 (397)
++|++||+|..+ .++........++++|.++.++...+......+...+.+...|..... .++.. ..||
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~d 121 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGV---------LPFEDSASFD 121 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCC---------CCCCCCCcee
Confidence 999999999987 455543222488999999999998555444322211567777765410 01333 3689
Q ss_pred EEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCcc
Q psy17793 168 RILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVE 242 (397)
Q Consensus 168 ~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~e 242 (397)
.+..... ..+. . ....+.. +.+.|+++|.+++.+......
T Consensus 122 ~~~~~~~-----------~~~~-----~--------~~~~~~~-----------~~~~l~~~g~~~~~~~~~~~~ 161 (257)
T COG0500 122 LVISLLV-----------LHLL-----P--------PAKALRE-----------LLRVLKPGGRLVLSDLLRDGL 161 (257)
T ss_pred EEeeeee-----------hhcC-----C--------HHHHHHH-----------HHHhcCCCcEEEEEeccCCCC
Confidence 8843111 0000 0 2455666 788899999999987764443
No 263
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=96.49 E-value=0.018 Score=53.57 Aligned_cols=122 Identities=18% Similarity=0.227 Sum_probs=63.6
Q ss_pred chhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccc
Q psy17793 71 NLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINT 150 (397)
Q Consensus 71 d~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~ 150 (397)
++--.++..+....++-.|-|+|||-+..+ ..+.++-+|+.+|.-... + .++.+|..+.+
T Consensus 58 nPvd~iI~~l~~~~~~~viaD~GCGdA~la----~~~~~~~~V~SfDLva~n-------------~--~Vtacdia~vP- 117 (219)
T PF05148_consen 58 NPVDVIIEWLKKRPKSLVIADFGCGDAKLA----KAVPNKHKVHSFDLVAPN-------------P--RVTACDIANVP- 117 (219)
T ss_dssp -HHHHHHHHHCTS-TTS-EEEES-TT-HHH----HH--S---EEEEESS-SS-------------T--TEEES-TTS-S-
T ss_pred CcHHHHHHHHHhcCCCEEEEECCCchHHHH----HhcccCceEEEeeccCCC-------------C--CEEEecCccCc-
Confidence 444444544444444568999999988765 344455689999985421 2 35668886653
Q ss_pred cchhhHHHhhhcccCccEEEEcCCCCC-CCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCC
Q psy17793 151 SSQIDIERMKLQKESFDRILLDAPCSG-FGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKD 229 (397)
Q Consensus 151 ~~~~d~~~~~~~~~~fD~Il~DpPCSg-~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpg 229 (397)
..++++|+++. |=+ .|+ +. ...|.+ |.|+||+|
T Consensus 118 ----------L~~~svDv~Vf---cLSLMGT-----------n~-----------~~fi~E-----------A~RvLK~~ 151 (219)
T PF05148_consen 118 ----------LEDESVDVAVF---CLSLMGT-----------NW-----------PDFIRE-----------ANRVLKPG 151 (219)
T ss_dssp ------------TT-EEEEEE---ES---SS------------H-----------HHHHHH-----------HHHHEEEE
T ss_pred ----------CCCCceeEEEE---EhhhhCC-----------Cc-----------HHHHHH-----------HHheeccC
Confidence 56788999987 321 111 12 556777 99999999
Q ss_pred cEEEEEe-cCCCccccHHHHHHHHHHCCCcEEE
Q psy17793 230 GILVYCT-CSLSVEENEAVIAWILHRHPEVELV 261 (397)
Q Consensus 230 G~lvysT-CS~~~eEnE~vV~~~L~~~~~~~l~ 261 (397)
|.|.... +|- -+|.+.-.+.++.. +|++.
T Consensus 152 G~L~IAEV~SR--f~~~~~F~~~~~~~-GF~~~ 181 (219)
T PF05148_consen 152 GILKIAEVKSR--FENVKQFIKALKKL-GFKLK 181 (219)
T ss_dssp EEEEEEEEGGG---S-HHHHHHHHHCT-TEEEE
T ss_pred cEEEEEEeccc--CcCHHHHHHHHHHC-CCeEE
Confidence 9987663 442 23433333445554 45554
No 264
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.40 E-value=0.078 Score=49.64 Aligned_cols=125 Identities=18% Similarity=0.215 Sum_probs=90.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccchhhHHHhhhc
Q psy17793 84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQ 162 (397)
Q Consensus 84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~~ 162 (397)
+.+.++.|+||--|.....+... +....++|.|+++.-++.+.++++++++.. +++..+|...... .
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~-~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~-----------~ 82 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKN-NPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLE-----------L 82 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhc-CCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccC-----------c
Confidence 34667999999999999888774 345789999999999999999999999864 9999999965531 2
Q ss_pred ccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCcc
Q psy17793 163 KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVE 242 (397)
Q Consensus 163 ~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~e 242 (397)
+..+|.|+. .|.|- ..+ +++|++ ..+.|+.=-++|. .|-
T Consensus 83 ~d~~d~ivI----AGMGG--------------~lI-------~~ILee-----------~~~~l~~~~rlIL-----QPn 121 (226)
T COG2384 83 EDEIDVIVI----AGMGG--------------TLI-------REILEE-----------GKEKLKGVERLIL-----QPN 121 (226)
T ss_pred cCCcCEEEE----eCCcH--------------HHH-------HHHHHH-----------hhhhhcCcceEEE-----CCC
Confidence 336898876 24331 111 556666 4444443235554 577
Q ss_pred ccHHHHHHHHHHCCCcEEEe
Q psy17793 243 ENEAVIAWILHRHPEVELVQ 262 (397)
Q Consensus 243 EnE~vV~~~L~~~~~~~l~~ 262 (397)
-++...+.+|..+ +|++..
T Consensus 122 ~~~~~LR~~L~~~-~~~I~~ 140 (226)
T COG2384 122 IHTYELREWLSAN-SYEIKA 140 (226)
T ss_pred CCHHHHHHHHHhC-Cceeee
Confidence 7888999999988 566543
No 265
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.39 E-value=0.0016 Score=67.35 Aligned_cols=101 Identities=15% Similarity=0.089 Sum_probs=58.6
Q ss_pred eEEEEcCCCChHHHHHHHHcCCCcEEEEE---eCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhccc
Q psy17793 88 KVLDMCAAPGNKLTHIALLMNDTGTLIAL---DKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE 164 (397)
Q Consensus 88 ~VLDlcagpG~kt~~lA~~~~~~~~V~av---D~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~ 164 (397)
.+||+|||.|+++.+|.++ +..+..+ |..+..++.+.++ |+.-+....+ ....+|+..
T Consensus 120 ~~LDvGcG~aSF~a~l~~r---~V~t~s~a~~d~~~~qvqfaleR----Gvpa~~~~~~------------s~rLPfp~~ 180 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLER---NVTTMSFAPNDEHEAQVQFALER----GVPAMIGVLG------------SQRLPFPSN 180 (506)
T ss_pred EEEeccceeehhHHHHhhC---CceEEEcccccCCchhhhhhhhc----Ccchhhhhhc------------cccccCCcc
Confidence 7899999999999988874 3333332 4444444444332 4432111100 112457888
Q ss_pred CccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCC
Q psy17793 165 SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLS 240 (397)
Q Consensus 165 ~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~ 240 (397)
.||.|=| |.-.. .|. ..+ -.+|-+ .-++|+|||++|+|.=.++
T Consensus 181 ~fDmvHc----src~i------~W~----~~~--------g~~l~e-----------vdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 181 AFDMVHC----SRCLI------PWH----PND--------GFLLFE-----------VDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred chhhhhc----ccccc------cch----hcc--------cceeeh-----------hhhhhccCceEEecCCccc
Confidence 9999874 33221 122 111 123444 7899999999999965555
No 266
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=96.28 E-value=0.055 Score=48.53 Aligned_cols=139 Identities=18% Similarity=0.226 Sum_probs=79.6
Q ss_pred cEEEechhHHHHHhccC-CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcc
Q psy17793 66 MGILQNLPSILAGHYLD-VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144 (397)
Q Consensus 66 ~~~~Qd~~S~l~~~~L~-~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D 144 (397)
++|--+-+..++..+++ ..++.+|+=+||=+-...+. .....+..++-.|.|.+- +.+|-+ .+...|
T Consensus 5 fwYs~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~--~~~~~~~~~~Lle~D~RF--------~~~~~~--~F~fyD 72 (162)
T PF10237_consen 5 FWYSDETAEFLARELLDGALDDTRIACLSTPSLYEALK--KESKPRIQSFLLEYDRRF--------EQFGGD--EFVFYD 72 (162)
T ss_pred cccCHHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHH--hhcCCCccEEEEeecchH--------HhcCCc--ceEECC
Confidence 34444444445555554 24567898888765444432 222356678889987643 334432 455666
Q ss_pred cccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccc
Q psy17793 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIP 224 (397)
Q Consensus 145 ~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~ 224 (397)
......- +....++||+|++||| +++ .+-.... ... +..
T Consensus 73 ~~~p~~~-------~~~l~~~~d~vv~DPP---------------Fl~-~ec~~k~-------a~t-----------i~~ 111 (162)
T PF10237_consen 73 YNEPEEL-------PEELKGKFDVVVIDPP---------------FLS-EECLTKT-------AET-----------IRL 111 (162)
T ss_pred CCChhhh-------hhhcCCCceEEEECCC---------------CCC-HHHHHHH-------HHH-----------HHH
Confidence 6543210 1122578999999999 222 2333222 222 444
Q ss_pred cccCCcEEEEEecCCCccccHHHHHHHHHHCCCcEEEecCc
Q psy17793 225 LLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLP 265 (397)
Q Consensus 225 lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~~~~ 265 (397)
++|+++.++.+ ..+++|+.+.+.+ +++.....|
T Consensus 112 L~k~~~kii~~----Tg~~~~~~~~~ll----~~~~~~f~p 144 (162)
T PF10237_consen 112 LLKPGGKIILC----TGEEMEELIKKLL----GLRMCDFQP 144 (162)
T ss_pred HhCccceEEEe----cHHHHHHHHHHHh----CeeEEeEEe
Confidence 55778899986 4788998888888 455444433
No 267
>KOG0024|consensus
Probab=96.01 E-value=0.061 Score=53.09 Aligned_cols=74 Identities=18% Similarity=0.209 Sum_probs=52.2
Q ss_pred cCCCcEEEechhHHH-HHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEE
Q psy17793 62 LDSSMGILQNLPSIL-AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQT 140 (397)
Q Consensus 62 ~~~g~~~~Qd~~S~l-~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~ 140 (397)
+.+|. ++|..+-.+ +...-+.+.|.+||=+||||=|..+.+++..-+..+|+.+|.++.|++.+++ +|.+.+..
T Consensus 146 ~eeGA-l~ePLsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~----~Ga~~~~~ 220 (354)
T KOG0024|consen 146 FEEGA-LIEPLSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK----FGATVTDP 220 (354)
T ss_pred hhhcc-cccchhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH----hCCeEEee
Confidence 45565 356655433 3344567899999999999966555444443467899999999999998875 78765443
No 268
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=95.98 E-value=0.037 Score=53.28 Aligned_cols=141 Identities=18% Similarity=0.196 Sum_probs=77.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC---------------------------
Q psy17793 84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS--------------------------- 136 (397)
Q Consensus 84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~--------------------------- 136 (397)
..|+++||+||||-..-. ......--.|+..|..+.-.+.+++-+++-+.-
T Consensus 55 ~~g~~llDiGsGPtiy~~--lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR 132 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQL--LSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLR 132 (256)
T ss_dssp S-EEEEEEES-TT--GGG--TTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhh--hhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHH
Confidence 357899999999954432 222223457999999999998888777654320
Q ss_pred -cE-EEEEcccccccccchhhHHHhh-hcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhh
Q psy17793 137 -SI-QTHVYDSTRINTSSQIDIERMK-LQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYR 213 (397)
Q Consensus 137 -~v-~~~~~D~~~~~~~~~~d~~~~~-~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~ 213 (397)
.| .++.+|.++...- .+. ..+.+||.|+. ..-++....+.... ++.+++
T Consensus 133 ~~Vk~Vv~cDV~~~~pl------~~~~~~p~~~D~v~s------------------~fcLE~a~~d~~~y-~~al~n--- 184 (256)
T PF01234_consen 133 RAVKQVVPCDVTQPNPL------DPPVVLPPKFDCVIS------------------SFCLESACKDLDEY-RRALRN--- 184 (256)
T ss_dssp HHEEEEEE--TTSSSTT------TTS-SS-SSEEEEEE------------------ESSHHHH-SSHHHH-HHHHHH---
T ss_pred HhhceEEEeeccCCCCC------CccccCccchhhhhh------------------hHHHHHHcCCHHHH-HHHHHH---
Confidence 01 1333444332100 000 01123666654 11232333333333 777888
Q ss_pred hhccccccccccccCCcEEEEEec---C---C------CccccHHHHHHHHHHCCCcEEEec
Q psy17793 214 FVSLFDWQGIPLLKKDGILVYCTC---S---L------SVEENEAVIAWILHRHPEVELVQT 263 (397)
Q Consensus 214 f~~~~~~~a~~lLkpgG~lvysTC---S---~------~~eEnE~vV~~~L~~~~~~~l~~~ 263 (397)
..++|||||.|++... | + ...-||+.|...|++. ++.+...
T Consensus 185 --------i~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~a-G~~i~~~ 237 (256)
T PF01234_consen 185 --------ISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEA-GFDIEDL 237 (256)
T ss_dssp --------HHTTEEEEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHT-TEEEEEE
T ss_pred --------HHHHcCCCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHc-CCEEEec
Confidence 9999999999998742 1 1 1135788999999987 5766654
No 269
>PHA01634 hypothetical protein
Probab=95.78 E-value=0.05 Score=46.79 Aligned_cols=49 Identities=14% Similarity=0.129 Sum_probs=43.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL 135 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~ 135 (397)
.+.+|+|+||+-|.-++..+. .++..|+|+|.++...+..+++++-+.+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l--~GAK~Vva~E~~~kl~k~~een~k~nnI 76 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLL--RGASFVVQYEKEEKLRKKWEEVCAYFNI 76 (156)
T ss_pred cCCEEEEecCCccchhhHHhh--cCccEEEEeccCHHHHHHHHHHhhhhee
Confidence 378999999999999988876 4778999999999999999999988754
No 270
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=95.77 E-value=0.033 Score=54.13 Aligned_cols=47 Identities=17% Similarity=0.218 Sum_probs=38.6
Q ss_pred CeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh
Q psy17793 87 QKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKL 133 (397)
Q Consensus 87 ~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~ 133 (397)
.+|||+|||||.-+..+.+..+.-.+++++|.|+.+++.++..++..
T Consensus 35 ~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 35 RSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred ceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence 58999999999877666666655668999999999999888876654
No 271
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.73 E-value=0.052 Score=54.26 Aligned_cols=51 Identities=25% Similarity=0.339 Sum_probs=39.8
Q ss_pred cCCCCCCeEEEEcCC-CChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793 81 LDVQPGQKVLDMCAA-PGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS 137 (397)
Q Consensus 81 L~~~~g~~VLDlcag-pG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~ 137 (397)
.+.+||++|+=.|+| -|..++++|..++ .+|+|+|++++..+.++ ++|.+.
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~----~lGAd~ 213 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAK----KLGADH 213 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHH----HhCCcE
Confidence 346899999988887 4466778888764 89999999999987765 567654
No 272
>PF01472 PUA: PUA domain; InterPro: IPR002478 The PUA (PseudoUridine synthase and Archaeosine transglycosylase) domain was named after the proteins in which it was first found []. PUA is a highly conserved RNA-binding motif found in a wide range of archaeal, bacterial and eukaryotic proteins, including enzymes that catalyse tRNA and rRNA post-transcriptional modifications, proteins involved in ribosome biogenesis and translation, as well as in enzymes involved in proline biosynthesis [, ]. The structures of several PUA-RNA complexes reveal a common RNA recognition surface, but also some versatility in the way in which the motif binds to RNA []. PUA motifs are involved in dyskeratosis congenita and cancer, pointing to links between RNA metabolism and human diseases [].; GO: 0003723 RNA binding; PDB: 1ZE2_A 1ZE1_A 1R3E_A 2AB4_A 3R90_D 2J5T_A 2J5V_B 1Q7H_A 2APO_A 2RFK_A ....
Probab=95.52 E-value=0.011 Score=45.92 Aligned_cols=31 Identities=35% Similarity=0.607 Sum_probs=26.6
Q ss_pred EEEechhhhhhhhcccceecccccccCCCCC
Q psy17793 347 QIIVDQPCALAVLRGADVFAPGVLAMPLGKN 377 (397)
Q Consensus 347 ~v~vd~~c~~a~LrGa~v~~pg~~~~~~~~~ 377 (397)
.++||..|..++++|+++|+|||+.+...+.
T Consensus 2 ~vvVd~~a~~~i~~Ga~L~~~GV~~~~~~f~ 32 (74)
T PF01472_consen 2 RVVVDDGAVEAILNGASLFAPGVVEVDGDFR 32 (74)
T ss_dssp EEEE-HHHHHHHHTTSEEEGGGEEEEETT--
T ss_pred EEEECccHHHHHHcCCCcchHHhEECCCCcC
Confidence 5899999999999999999999999988764
No 273
>PRK11524 putative methyltransferase; Provisional
Probab=95.50 E-value=0.023 Score=55.35 Aligned_cols=72 Identities=18% Similarity=0.093 Sum_probs=44.7
Q ss_pred cEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhc
Q psy17793 137 SIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVS 216 (397)
Q Consensus 137 ~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~ 216 (397)
+.+++++|+..... .++.++||+|++|||+-...........+. ...+...-.++|..
T Consensus 8 ~~~i~~gD~~~~l~---------~l~~~siDlIitDPPY~~~~~~~~~~~~~~-------~~~~~~~l~~~l~~------ 65 (284)
T PRK11524 8 AKTIIHGDALTELK---------KIPSESVDLIFADPPYNIGKNFDGLIEAWK-------EDLFIDWLYEWIDE------ 65 (284)
T ss_pred CCEEEeccHHHHHH---------hcccCcccEEEECCCccccccccccccccc-------HHHHHHHHHHHHHH------
Confidence 45788889887532 245678999999999843111111111111 11222223677788
Q ss_pred cccccccccccCCcEEEEE
Q psy17793 217 LFDWQGIPLLKKDGILVYC 235 (397)
Q Consensus 217 ~~~~~a~~lLkpgG~lvys 235 (397)
+.++||+||.++..
T Consensus 66 -----~~rvLK~~G~i~i~ 79 (284)
T PRK11524 66 -----CHRVLKKQGTMYIM 79 (284)
T ss_pred -----HHHHhCCCcEEEEE
Confidence 99999999999875
No 274
>KOG2782|consensus
Probab=95.44 E-value=0.01 Score=55.37 Aligned_cols=99 Identities=19% Similarity=0.163 Sum_probs=68.2
Q ss_pred HHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH
Q psy17793 77 AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI 156 (397)
Q Consensus 77 ~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~ 156 (397)
+.++|.|.+|...+||.-|.||.|..+.+.- ...+++|.|.+|-+-+.++.....+--..++...+.+..+. ...
T Consensus 35 vl~~lspv~g~sf~DmTfGagGHt~~ilqk~-se~k~yalDrDP~A~~La~~~s~el~~~~l~a~Lg~Fs~~~-~l~--- 109 (303)
T KOG2782|consen 35 VLDILSPVRGRSFVDMTFGAGGHTSSILQKH-SELKNYALDRDPVARKLAHFHSDELMHPTLKAVLGNFSYIK-SLI--- 109 (303)
T ss_pred HHHHcCCCCCceEEEEeccCCcchHHHHHhC-cHhhhhhhccChHHHHHHHHhhHhhcchhHHHHHhhhHHHH-HHH---
Confidence 3567889999999999999999999998863 56789999999999888776664332122222222222221 000
Q ss_pred HHhhhcccCccEEEEcCCCCCCCC
Q psy17793 157 ERMKLQKESFDRILLDAPCSGFGQ 180 (397)
Q Consensus 157 ~~~~~~~~~fD~Il~DpPCSg~G~ 180 (397)
.+.-..+..||.||+|--||+...
T Consensus 110 ~~~gl~~~~vDGiLmDlGcSSMQ~ 133 (303)
T KOG2782|consen 110 ADTGLLDVGVDGILMDLGCSSMQV 133 (303)
T ss_pred HHhCCCcCCcceEEeecCcccccc
Confidence 111245678999999999999763
No 275
>KOG2078|consensus
Probab=95.40 E-value=0.0089 Score=60.67 Aligned_cols=64 Identities=22% Similarity=0.216 Sum_probs=56.5
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC--cEEEEEccccccc
Q psy17793 83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS--SIQTHVYDSTRIN 149 (397)
Q Consensus 83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~--~v~~~~~D~~~~~ 149 (397)
-++|+.|-|+|||-|-+++-++. .+.+|+|+|.++++++.|+.|++.+.+. +|++...|+..+.
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~k---K~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAK---KGCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL 312 (495)
T ss_pred cCCcchhhhhhcCcCccccchhh---cCcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence 36899999999999999987776 3489999999999999999999998875 4999999998775
No 276
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.33 E-value=0.022 Score=56.47 Aligned_cols=73 Identities=22% Similarity=0.282 Sum_probs=52.7
Q ss_pred EEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccCccE
Q psy17793 89 VLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDR 168 (397)
Q Consensus 89 VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~ 168 (397)
|+|++||.||.+.-+-.. +--.+.|+|+++.+.+..+.|.. + .+...|..++... .+ ..+|+
T Consensus 1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~-----~-~~~~~Di~~~~~~--------~~--~~~dv 62 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFG-----N-KVPFGDITKISPS--------DI--PDFDI 62 (315)
T ss_pred CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCC-----C-CCCccChhhhhhh--------hC--CCcCE
Confidence 689999999999766552 33457889999999999888753 2 3345677665211 12 35899
Q ss_pred EEEcCCCCCCC
Q psy17793 169 ILLDAPCSGFG 179 (397)
Q Consensus 169 Il~DpPCSg~G 179 (397)
++.-|||.+..
T Consensus 63 l~gg~PCq~fS 73 (315)
T TIGR00675 63 LLGGFPCQPFS 73 (315)
T ss_pred EEecCCCcccc
Confidence 99999997754
No 277
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=95.31 E-value=0.29 Score=45.17 Aligned_cols=40 Identities=18% Similarity=0.328 Sum_probs=35.3
Q ss_pred ccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCC
Q psy17793 80 YLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKS 119 (397)
Q Consensus 80 ~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s 119 (397)
+..+++|.+|+|+--|.|.+|..++..++.+|.|+++=-.
T Consensus 43 FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~ 82 (238)
T COG4798 43 FAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPA 82 (238)
T ss_pred EeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecch
Confidence 4467899999999999999999999999999999987543
No 278
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=95.07 E-value=0.15 Score=55.55 Aligned_cols=126 Identities=14% Similarity=0.138 Sum_probs=78.1
Q ss_pred CeEEEEcCCCChHHHHHHHHc------CC-----CcEEEEEeCCHHHHHHHHHHHH--------------H-----hCCC
Q psy17793 87 QKVLDMCAAPGNKLTHIALLM------ND-----TGTLIALDKSKPRVTKLEETIK--------------K-----LQLS 136 (397)
Q Consensus 87 ~~VLDlcagpG~kt~~lA~~~------~~-----~~~V~avD~s~~rl~~l~~n~~--------------~-----~g~~ 136 (397)
=+|+|+|-|+|.-.+.+.+.. .+ .-+++++|..|-..+.+.+.++ . .|+.
T Consensus 59 ~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~ 138 (662)
T PRK01747 59 FVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGCH 138 (662)
T ss_pred EEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCce
Confidence 589999999998777666544 11 3578999987633333322221 1 1221
Q ss_pred ---------cEEEEEcccccccccchhhHHHhhhcccCccEEEEcC--CCCCCCCCcccccccCccchHHHHHHHHHHHH
Q psy17793 137 ---------SIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDA--PCSGFGQRPMFYNANSFLNLDKKIKSYANIQK 205 (397)
Q Consensus 137 ---------~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~Dp--PCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~ 205 (397)
++++..+|+...... + ...||.|++|+ | .++|++ |+ .
T Consensus 139 ~~~~~~~~~~l~l~~gd~~~~~~~---------~-~~~~d~~~lD~FsP----~~np~~---W~---------------~ 186 (662)
T PRK01747 139 RLLFDDGRVTLDLWFGDANELLPQ---------L-DARADAWFLDGFAP----AKNPDM---WS---------------P 186 (662)
T ss_pred EEEecCCcEEEEEEecCHHHHHHh---------c-cccccEEEeCCCCC----ccChhh---cc---------------H
Confidence 234555676654311 1 24699999996 3 123333 44 4
Q ss_pred HHHHHHhhhhccccccccccccCCcEEEEEecCCCccccHHHHHHHHHHCCCcEEEec
Q psy17793 206 KLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT 263 (397)
Q Consensus 206 ~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~~ 263 (397)
+++.. ..+++++||+++--|++ ..|++-|... +|++...
T Consensus 187 ~~~~~-----------l~~~~~~~~~~~t~t~a-------~~vr~~l~~~-GF~v~~~ 225 (662)
T PRK01747 187 NLFNA-----------LARLARPGATLATFTSA-------GFVRRGLQEA-GFTVRKV 225 (662)
T ss_pred HHHHH-----------HHHHhCCCCEEEEeehH-------HHHHHHHHHc-CCeeeec
Confidence 55666 77889999999854443 4788888887 6777654
No 279
>COG2016 Predicted RNA-binding protein (contains PUA domain) [Translation, ribosomal structure and biogenesis]
Probab=94.92 E-value=0.019 Score=51.03 Aligned_cols=32 Identities=34% Similarity=0.512 Sum_probs=30.4
Q ss_pred eEEEechhhhhhhhcccceecccccccCCCCC
Q psy17793 346 VQIIVDQPCALAVLRGADVFAPGVLAMPLGKN 377 (397)
Q Consensus 346 ~~v~vd~~c~~a~LrGa~v~~pg~~~~~~~~~ 377 (397)
..|.||...-..++.||||++|||+++...++
T Consensus 77 ~~V~VD~GAvk~v~nGADvM~PGIv~~~~~ik 108 (161)
T COG2016 77 YVVVVDEGAVKFVLNGADVMAPGIVSADGEIK 108 (161)
T ss_pred cEEEEcCccHhhhcCCCceeccceeecCCCcc
Confidence 39999999999999999999999999999887
No 280
>TIGR00451 unchar_dom_2 uncharacterized domain 2. This uncharacterized domain is found a number of enzymes and uncharacterized proteins, often at the C-terminus. It is found in some but not all members of a family of related tRNA-guanine transglycosylases (tgt), which exchange a guanine base for some modified base without breaking the phosphodiester backbone of the tRNA. It is also found in rRNA pseudouridine synthase, another enzyme of RNA base modification not otherwise homologous to tgt. It is found, again at the C-terminus, in two putative glutamate 5-kinases. It is also found in a family of small, uncharacterized archaeal proteins consisting mostly of this domain.
Probab=94.71 E-value=0.023 Score=47.22 Aligned_cols=33 Identities=24% Similarity=0.370 Sum_probs=29.7
Q ss_pred CCeEEEechhhhhhhhcccceecccccccCCCC
Q psy17793 344 HPVQIIVDQPCALAVLRGADVFAPGVLAMPLGK 376 (397)
Q Consensus 344 ~~~~v~vd~~c~~a~LrGa~v~~pg~~~~~~~~ 376 (397)
....++||..|..++++||++++|||+++...+
T Consensus 29 ~~~~v~vd~~a~~~l~~Ga~L~~pGV~~~~~~~ 61 (107)
T TIGR00451 29 DKKIVVVDNGAVKFLKNGADVMRPGIVDADEDI 61 (107)
T ss_pred hCCEEEEChhHHHHHHCCccccCCeeEeCCCCc
Confidence 457899999999999999999999999987754
No 281
>PRK11524 putative methyltransferase; Provisional
Probab=94.66 E-value=0.064 Score=52.32 Aligned_cols=46 Identities=17% Similarity=0.156 Sum_probs=37.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH
Q psy17793 84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKK 132 (397)
Q Consensus 84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~ 132 (397)
.+|+.|||-++|+|..+. +|..+ +-+.+|+|++++.++.++++++.
T Consensus 207 ~~GD~VLDPF~GSGTT~~-AA~~l--gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGA-VAKAS--GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCEEEECCCCCcHHHH-HHHHc--CCCEEEEeCCHHHHHHHHHHHHh
Confidence 689999999999997654 44444 34799999999999999999864
No 282
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=94.47 E-value=0.077 Score=52.85 Aligned_cols=77 Identities=19% Similarity=0.280 Sum_probs=55.1
Q ss_pred CeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccCc
Q psy17793 87 QKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESF 166 (397)
Q Consensus 87 ~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~f 166 (397)
-+++|++||-||...-+... +--.+.|+|+++.+++..+.|... -.+...|....... .+....+
T Consensus 4 ~~~idLFsG~GG~~lGf~~a--gf~~~~a~Eid~~a~~ty~~n~~~-----~~~~~~di~~~~~~--------~~~~~~~ 68 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEA--GFEIVFANEIDPPAVATYKANFPH-----GDIILGDIKELDGE--------ALRKSDV 68 (328)
T ss_pred ceEEeeccCCchHHHHHHhc--CCeEEEEEecCHHHHHHHHHhCCC-----CceeechHhhcChh--------hccccCC
Confidence 47999999999999665553 334689999999999999887653 34555666554311 1111179
Q ss_pred cEEEEcCCCCCC
Q psy17793 167 DRILLDAPCSGF 178 (397)
Q Consensus 167 D~Il~DpPCSg~ 178 (397)
|+|+.=|||-+.
T Consensus 69 DvligGpPCQ~F 80 (328)
T COG0270 69 DVLIGGPPCQDF 80 (328)
T ss_pred CEEEeCCCCcch
Confidence 999999999654
No 283
>KOG3178|consensus
Probab=94.38 E-value=0.26 Score=49.11 Aligned_cols=107 Identities=15% Similarity=0.147 Sum_probs=77.7
Q ss_pred hccCCCCC----CeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchh
Q psy17793 79 HYLDVQPG----QKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQI 154 (397)
Q Consensus 79 ~~L~~~~g----~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~ 154 (397)
.++....| ...+|+|+|.|..+-++.... + .|-+++.+..-+-.+...+. .| |+-+.+|...-.
T Consensus 167 ~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~f-p--~ik~infdlp~v~~~a~~~~-~g---V~~v~gdmfq~~----- 234 (342)
T KOG3178|consen 167 KILEVYTGFKGVNVAVDVGGGIGRVLKNLLSKY-P--HIKGINFDLPFVLAAAPYLA-PG---VEHVAGDMFQDT----- 234 (342)
T ss_pred hhhhhhcccccCceEEEcCCcHhHHHHHHHHhC-C--CCceeecCHHHHHhhhhhhc-CC---cceecccccccC-----
Confidence 34444455 688999999999999988853 2 47888888888888777766 56 455567765431
Q ss_pred hHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEE
Q psy17793 155 DIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVY 234 (397)
Q Consensus 155 d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvy 234 (397)
+ +-|+|++ .++..+|+ .++. .++|++ .++.|+|||.|+.
T Consensus 235 -------P--~~daI~m----------kWiLhdwt----Dedc-------vkiLkn-----------C~~sL~~~GkIiv 273 (342)
T KOG3178|consen 235 -------P--KGDAIWM----------KWILHDWT----DEDC-------VKILKN-----------CKKSLPPGGKIIV 273 (342)
T ss_pred -------C--CcCeEEE----------EeecccCC----hHHH-------HHHHHH-----------HHHhCCCCCEEEE
Confidence 2 2368886 45556677 5555 677888 9999999999998
Q ss_pred EecC
Q psy17793 235 CTCS 238 (397)
Q Consensus 235 sTCS 238 (397)
..+-
T Consensus 274 ~E~V 277 (342)
T KOG3178|consen 274 VENV 277 (342)
T ss_pred Eecc
Confidence 8763
No 284
>TIGR03684 arCOG00985 arCOG04150 universal archaeal PUA-domain protein. This universal archaeal protein contains a domain possibly associated with RNA binding (pfam01472, TIGR00451).
Probab=94.20 E-value=0.039 Score=48.74 Aligned_cols=33 Identities=24% Similarity=0.521 Sum_probs=29.4
Q ss_pred CCeEEEechhhhhhhhcccceecccccccCCCC
Q psy17793 344 HPVQIIVDQPCALAVLRGADVFAPGVLAMPLGK 376 (397)
Q Consensus 344 ~~~~v~vd~~c~~a~LrGa~v~~pg~~~~~~~~ 376 (397)
....|+||..+..++++||++++|||++++.++
T Consensus 68 ~~~~v~Vd~~a~~~l~~Ga~lm~pGV~~~~~~~ 100 (150)
T TIGR03684 68 DKNRVVVDEGAVKFIINGADIMAPGIVSADPSI 100 (150)
T ss_pred cCCEEEECccHHHHHhcCcccccCceecCCCCC
Confidence 347899999999999999999999999987754
No 285
>KOG1269|consensus
Probab=94.06 E-value=0.068 Score=54.04 Aligned_cols=77 Identities=25% Similarity=0.366 Sum_probs=60.2
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccchhhHHHhh
Q psy17793 82 DVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMK 160 (397)
Q Consensus 82 ~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~ 160 (397)
...++..++|++||-|+.+..++.. ....++++|.++..+..........++++ -.+...|+.+. +
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~f--~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~-----------~ 173 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAVF--KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKM-----------P 173 (364)
T ss_pred cCcccccccccCcCcCchhHHHHHh--ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcC-----------C
Confidence 4568889999999999999999886 45789999999999999888888887765 22355565543 3
Q ss_pred hcccCccEEEE
Q psy17793 161 LQKESFDRILL 171 (397)
Q Consensus 161 ~~~~~fD~Il~ 171 (397)
+.+..||.+-+
T Consensus 174 fedn~fd~v~~ 184 (364)
T KOG1269|consen 174 FEDNTFDGVRF 184 (364)
T ss_pred CCccccCcEEE
Confidence 66778998864
No 286
>PRK14560 putative RNA-binding protein; Provisional
Probab=93.92 E-value=0.047 Score=48.76 Aligned_cols=33 Identities=30% Similarity=0.441 Sum_probs=29.0
Q ss_pred CCeEEEechhhhhhhhcccceecccccccCCCC
Q psy17793 344 HPVQIIVDQPCALAVLRGADVFAPGVLAMPLGK 376 (397)
Q Consensus 344 ~~~~v~vd~~c~~a~LrGa~v~~pg~~~~~~~~ 376 (397)
....++||..+..++++||++++|||++++.++
T Consensus 75 ~~~~v~Vd~~a~~~i~~Ga~lm~pGV~~~~~~~ 107 (160)
T PRK14560 75 EKRRVVVDAGAVKFVSNGADVMAPGIVEADEDI 107 (160)
T ss_pred cCCEEEEeccHHHHHHCCCceecCeeeeCCCCC
Confidence 346899999999999999999999999987654
No 287
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=93.78 E-value=0.12 Score=47.51 Aligned_cols=43 Identities=21% Similarity=0.271 Sum_probs=31.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHH
Q psy17793 83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128 (397)
Q Consensus 83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~ 128 (397)
-.+|+.|||.+||+|..+. +|..+ +-+-+++|+++..++.+++
T Consensus 189 t~~gdiVlDpF~GSGTT~~-aa~~l--~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGTTAV-AAEEL--GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-TT-EEEETT-TTTHHHH-HHHHT--T-EEEEEESSHHHHHHHHH
T ss_pred hccceeeehhhhccChHHH-HHHHc--CCeEEEEeCCHHHHHHhcC
Confidence 3679999999999997554 44444 3479999999999998864
No 288
>KOG3987|consensus
Probab=93.57 E-value=0.023 Score=52.72 Aligned_cols=39 Identities=21% Similarity=0.187 Sum_probs=32.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHH
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~ 127 (397)
..++||+|||-|-.|.+++-.. .+|+|-|.|..+..+++
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~ 151 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLK 151 (288)
T ss_pred CeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHh
Confidence 4699999999999999888754 46999999888876654
No 289
>PRK13699 putative methylase; Provisional
Probab=93.43 E-value=0.2 Score=47.39 Aligned_cols=49 Identities=20% Similarity=0.228 Sum_probs=39.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC
Q psy17793 83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ 134 (397)
Q Consensus 83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g 134 (397)
-.+|+.|||.++|+|.... .|..+ +-..+|+|+++.-.+.+.++++...
T Consensus 161 s~~g~~vlDpf~Gsgtt~~-aa~~~--~r~~~g~e~~~~y~~~~~~r~~~~~ 209 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCV-AALQS--GRRYIGIELLEQYHRAGQQRLAAVQ 209 (227)
T ss_pred CCCCCEEEeCCCCCCHHHH-HHHHc--CCCEEEEecCHHHHHHHHHHHHHHH
Confidence 3689999999999997664 33333 3478899999999999999987754
No 290
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=93.39 E-value=0.62 Score=46.13 Aligned_cols=51 Identities=12% Similarity=0.195 Sum_probs=33.5
Q ss_pred CCCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793 82 DVQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS 137 (397)
Q Consensus 82 ~~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~ 137 (397)
...+|++||=.|+|+ |..++++|..+ +..+|+++|.++++++.++ ++|.+.
T Consensus 166 ~~~~g~~VlV~G~G~vG~~aiqlak~~-G~~~Vi~~~~~~~~~~~a~----~lGa~~ 217 (343)
T PRK09880 166 GDLQGKRVFVSGVGPIGCLIVAAVKTL-GAAEIVCADVSPRSLSLAR----EMGADK 217 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHHH----HcCCcE
Confidence 345789999877532 23344555554 2347999999999987664 467654
No 291
>PRK13699 putative methylase; Provisional
Probab=92.94 E-value=0.12 Score=48.76 Aligned_cols=91 Identities=14% Similarity=0.089 Sum_probs=50.6
Q ss_pred EEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccc
Q psy17793 139 QTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLF 218 (397)
Q Consensus 139 ~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~ 218 (397)
+++++|..+... .++++++|+|+.|||+-- |.+........ .. .+.+.-.+.+.+
T Consensus 3 ~l~~gD~le~l~---------~lpd~SVDLIiTDPPY~i-~~~~~~~~~~~----~~---~~~ew~~~~l~E-------- 57 (227)
T PRK13699 3 RFILGNCIDVMA---------RFPDNAVDFILTDPPYLV-GFRDRQGRTIA----GD---KTDEWLQPACNE-------- 57 (227)
T ss_pred eEEechHHHHHH---------hCCccccceEEeCCCccc-ccccCCCcccc----cc---cHHHHHHHHHHH--------
Confidence 567788876542 357789999999999842 21100000011 01 111223567788
Q ss_pred cccccccccCCcEEEEEecCCCccccHHHHHHHHHHCCCcEEEe
Q psy17793 219 DWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQ 262 (397)
Q Consensus 219 ~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~ 262 (397)
+.++|||||.++. -|+.+. ...+...+++. ++.+..
T Consensus 58 ---~~RVLKpgg~l~i-f~~~~~---~~~~~~al~~~-GF~l~~ 93 (227)
T PRK13699 58 ---MYRVLKKDALMVS-FYGWNR---VDRFMAAWKNA-GFSVVG 93 (227)
T ss_pred ---HHHHcCCCCEEEE-Eecccc---HHHHHHHHHHC-CCEEee
Confidence 9999999987753 355432 22233344554 466544
No 292
>PRK10458 DNA cytosine methylase; Provisional
Probab=92.94 E-value=0.37 Score=50.40 Aligned_cols=90 Identities=16% Similarity=0.195 Sum_probs=55.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccch-----hhH-HHh
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQ-----IDI-ERM 159 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~-----~d~-~~~ 159 (397)
.-+++|++||.||.+.-+-.. +.-.|.++|+++.+.+..+.|... ......+..|...+..... .+. ...
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a--G~~~v~a~Eid~~A~~TY~~N~~~--~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~ 163 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI--GGQCVFTSEWNKHAVRTYKANWYC--DPATHRFNEDIRDITLSHKEGVSDEEAAEHI 163 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc--CCEEEEEEechHHHHHHHHHHcCC--CCccceeccChhhCccccccccchhhhhhhh
Confidence 348999999999999766442 334689999999999988887421 1122344456555421100 000 000
Q ss_pred hhcccCccEEEEcCCCCCCC
Q psy17793 160 KLQKESFDRILLDAPCSGFG 179 (397)
Q Consensus 160 ~~~~~~fD~Il~DpPCSg~G 179 (397)
......+|+++.-|||-+..
T Consensus 164 ~~~~p~~DvL~gGpPCQ~FS 183 (467)
T PRK10458 164 RQHIPDHDVLLAGFPCQPFS 183 (467)
T ss_pred hccCCCCCEEEEcCCCCccc
Confidence 00113589999999997753
No 293
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=92.74 E-value=0.2 Score=47.45 Aligned_cols=83 Identities=17% Similarity=0.202 Sum_probs=55.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHcC---CCcEEEEEeCCHHHHHHHHHHHHHh-CCCc-EEEEEc-ccccccccchhhHHH
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLMN---DTGTLIALDKSKPRVTKLEETIKKL-QLSS-IQTHVY-DSTRINTSSQIDIER 158 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~~---~~~~V~avD~s~~rl~~l~~n~~~~-g~~~-v~~~~~-D~~~~~~~~~~d~~~ 158 (397)
++-++||+|.|.-- +--+++ -+-+.++.|+|+..++.++.++..+ ++.+ |++... |...+...
T Consensus 78 ~~i~~LDIGvGAnC----IYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~g------- 146 (292)
T COG3129 78 KNIRILDIGVGANC----IYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNG------- 146 (292)
T ss_pred CceEEEeeccCccc----ccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccc-------
Confidence 45588999887432 333332 2467899999999999999999988 6655 665543 22222111
Q ss_pred hhhcccCccEEEEcCCCCCC
Q psy17793 159 MKLQKESFDRILLDAPCSGF 178 (397)
Q Consensus 159 ~~~~~~~fD~Il~DpPCSg~ 178 (397)
..-.++.||.++||||--++
T Consensus 147 iig~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 147 IIGKNERYDATLCNPPFHDS 166 (292)
T ss_pred cccccceeeeEecCCCcchh
Confidence 01135789999999996554
No 294
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=92.38 E-value=0.38 Score=48.25 Aligned_cols=45 Identities=31% Similarity=0.479 Sum_probs=35.5
Q ss_pred CCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHH
Q psy17793 83 VQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128 (397)
Q Consensus 83 ~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~ 128 (397)
..++.+|+=+|||| |..+.++|... +..+|+++|.++.|++.+++
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~-Ga~~Viv~d~~~~Rl~~A~~ 211 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLL-GASVVIVVDRSPERLELAKE 211 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHHHHH
Confidence 45555999999999 55555666654 67899999999999999876
No 295
>KOG1562|consensus
Probab=92.23 E-value=0.68 Score=45.36 Aligned_cols=124 Identities=17% Similarity=0.179 Sum_probs=85.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC--C--CcEEEEEcccccccccchhhHHHhh
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ--L--SSIQTHVYDSTRINTSSQIDIERMK 160 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g--~--~~v~~~~~D~~~~~~~~~~d~~~~~ 160 (397)
.-+.||=+|-|-|+..-..+.- ..-+.+.-+|++..-++..++-+..+- . +.|.+..+|+..+...
T Consensus 121 npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~--------- 190 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLED--------- 190 (337)
T ss_pred CCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHH---------
Confidence 4468999999999987655543 234578899999999888777666542 2 4589999999887532
Q ss_pred hcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCC
Q psy17793 161 LQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLS 240 (397)
Q Consensus 161 ~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~ 240 (397)
...+.||+|++|-. .-.....+..|+..... ..+.||++|+++..
T Consensus 191 ~~~~~~dVii~dss-------------------dpvgpa~~lf~~~~~~~-----------v~~aLk~dgv~~~q----- 235 (337)
T KOG1562|consen 191 LKENPFDVIITDSS-------------------DPVGPACALFQKPYFGL-----------VLDALKGDGVVCTQ----- 235 (337)
T ss_pred hccCCceEEEEecC-------------------CccchHHHHHHHHHHHH-----------HHHhhCCCcEEEEe-----
Confidence 33578999999754 12222233456777777 78889999998764
Q ss_pred ccccHHHHHHHHHH
Q psy17793 241 VEENEAVIAWILHR 254 (397)
Q Consensus 241 ~eEnE~vV~~~L~~ 254 (397)
+|+..+-..++++
T Consensus 236 -~ec~wl~~~~i~e 248 (337)
T KOG1562|consen 236 -GECMWLHLDYIKE 248 (337)
T ss_pred -cceehHHHHHHHH
Confidence 3555555555544
No 296
>KOG3045|consensus
Probab=92.21 E-value=0.53 Score=45.33 Aligned_cols=87 Identities=18% Similarity=0.345 Sum_probs=58.5
Q ss_pred cCCCCCC-eEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHh
Q psy17793 81 LDVQPGQ-KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERM 159 (397)
Q Consensus 81 L~~~~g~-~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~ 159 (397)
+...++. .|-|+|||-+-.+. ...-.|+++|+-+. |=+++.+|.++.+
T Consensus 175 ik~r~~~~vIaD~GCGEakiA~------~~~~kV~SfDL~a~---------------~~~V~~cDm~~vP---------- 223 (325)
T KOG3045|consen 175 IKRRPKNIVIADFGCGEAKIAS------SERHKVHSFDLVAV---------------NERVIACDMRNVP---------- 223 (325)
T ss_pred HHhCcCceEEEecccchhhhhh------ccccceeeeeeecC---------------CCceeeccccCCc----------
Confidence 3334444 67799999876543 23457999997432 2356778888763
Q ss_pred hhcccCccEEEEcCCCCC-CCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793 160 KLQKESFDRILLDAPCSG-FGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC 235 (397)
Q Consensus 160 ~~~~~~fD~Il~DpPCSg-~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys 235 (397)
..++++|+++. |-+ .|+ ++ ...+.+ |.++||+||.+...
T Consensus 224 -l~d~svDvaV~---CLSLMgt-----------n~-----------~df~kE-----------a~RiLk~gG~l~IA 263 (325)
T KOG3045|consen 224 -LEDESVDVAVF---CLSLMGT-----------NL-----------ADFIKE-----------ANRILKPGGLLYIA 263 (325)
T ss_pred -CccCcccEEEe---eHhhhcc-----------cH-----------HHHHHH-----------HHHHhccCceEEEE
Confidence 56789999887 421 111 12 566777 99999999999886
No 297
>KOG1501|consensus
Probab=91.17 E-value=0.44 Score=48.93 Aligned_cols=55 Identities=20% Similarity=0.114 Sum_probs=45.9
Q ss_pred eEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcc
Q psy17793 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYD 144 (397)
Q Consensus 88 ~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D 144 (397)
.|||+|+|+|..+.+++... +-.|+|+|.-+.+.+.+++-..++|.+ +|.++.--
T Consensus 69 ~vLdigtGTGLLSmMAvrag--aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkr 124 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAG--ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKR 124 (636)
T ss_pred EEEEccCCccHHHHHHHHhc--CCeEEeehhhchHHHHHHHHHhcCCCccceeeeccc
Confidence 68999999999998777653 457999999999999999999999985 36665433
No 298
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=91.03 E-value=0.92 Score=37.90 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=28.6
Q ss_pred CChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793 96 PGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS 137 (397)
Q Consensus 96 pG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~ 137 (397)
-|..++++|..++ .+|+++|.++.+++.++ ++|.+.
T Consensus 2 vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~----~~Ga~~ 37 (130)
T PF00107_consen 2 VGLMAIQLAKAMG--AKVIATDRSEEKLELAK----ELGADH 37 (130)
T ss_dssp HHHHHHHHHHHTT--SEEEEEESSHHHHHHHH----HTTESE
T ss_pred hHHHHHHHHHHcC--CEEEEEECCHHHHHHHH----hhcccc
Confidence 4778889998874 89999999999987764 567543
No 299
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=90.62 E-value=0.26 Score=45.13 Aligned_cols=79 Identities=16% Similarity=0.170 Sum_probs=40.5
Q ss_pred ccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCccccH
Q psy17793 166 FDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245 (397)
Q Consensus 166 fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~eEnE 245 (397)
+|+|+.|||+-............. ......+......++.+ +.++|||||.+++. |+- .+..
T Consensus 1 VdliitDPPY~~~~~~~~~~~~~~----~~~~~~y~~~~~~~~~~-----------~~rvLk~~g~~~i~-~~~--~~~~ 62 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDYNNYFDYGD----NKNHEEYLEWMEEWLKE-----------CYRVLKPGGSIFIF-IDD--REIA 62 (231)
T ss_dssp EEEEEE---TSSSCS-----CSCH----CCHHHHHHHHHHHHHHH-----------HHHHEEEEEEEEEE-E-C--CEEC
T ss_pred CCEEEECCCCCCCCCcchhhhccC----CCCHHHHHHHHHHHHHH-----------HHhhcCCCeeEEEE-ecc--hhhh
Confidence 589999999754322100000001 12344444445778888 99999999998764 332 2222
Q ss_pred -HHHHHHHHHCCCcEEEe
Q psy17793 246 -AVIAWILHRHPEVELVQ 262 (397)
Q Consensus 246 -~vV~~~L~~~~~~~l~~ 262 (397)
.....+++.++++.+..
T Consensus 63 ~~~~~~~~~~~g~~~~~~ 80 (231)
T PF01555_consen 63 GFLFELALEIFGGFFLRN 80 (231)
T ss_dssp THHHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHHhhhhheec
Confidence 25555566553366554
No 300
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=90.57 E-value=1 Score=43.17 Aligned_cols=74 Identities=24% Similarity=0.152 Sum_probs=51.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793 84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK 163 (397)
Q Consensus 84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~ 163 (397)
.+.++|+|+|||-==.++-.... ..+..++|+|+|+..++.+..-+..+|.. .++...|...-. ..
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~-~~~a~Y~a~DID~~~ve~l~~~l~~l~~~-~~~~v~Dl~~~~------------~~ 169 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPE-APGATYIAYDIDSQLVEFLNAFLAVLGVP-HDARVRDLLSDP------------PK 169 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTS-STT-EEEEEESBHHHHHHHHHHHHHTT-C-EEEEEE-TTTSH------------TT
T ss_pred CCCchhhhhhccCCceehhhccc-CCCcEEEEEeCCHHHHHHHHHHHHhhCCC-cceeEeeeeccC------------CC
Confidence 34679999999987777543332 24569999999999999999999999964 566666765431 34
Q ss_pred cCccEEEE
Q psy17793 164 ESFDRILL 171 (397)
Q Consensus 164 ~~fD~Il~ 171 (397)
...|+.|+
T Consensus 170 ~~~DlaLl 177 (251)
T PF07091_consen 170 EPADLALL 177 (251)
T ss_dssp SEESEEEE
T ss_pred CCcchhhH
Confidence 56899887
No 301
>KOG0822|consensus
Probab=90.44 E-value=0.5 Score=49.58 Aligned_cols=61 Identities=15% Similarity=0.098 Sum_probs=47.2
Q ss_pred eEEEEcCCCCh---HHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEccccccc
Q psy17793 88 KVLDMCAAPGN---KLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRIN 149 (397)
Q Consensus 88 ~VLDlcagpG~---kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~ 149 (397)
.|+=+|||-|- .++.+|.....+.+++|+|++|.++..++. .+....+ .|+++..|.+.+.
T Consensus 370 VimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ 434 (649)
T KOG0822|consen 370 VIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWN 434 (649)
T ss_pred EEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccC
Confidence 56788999984 456667766677889999999999999875 3333333 4999999999984
No 302
>PRK05599 hypothetical protein; Provisional
Probab=90.37 E-value=5 Score=37.60 Aligned_cols=83 Identities=10% Similarity=0.181 Sum_probs=54.9
Q ss_pred eEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhcccCc
Q psy17793 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQKESF 166 (397)
Q Consensus 88 ~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~~~~f 166 (397)
.+|=.|+ ++|.+..+|..+..+.+|+.++.++.+++.+.+.++..|-..+.++..|+.+...- .+. .......+..
T Consensus 2 ~vlItGa-s~GIG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v--~~~~~~~~~~~g~i 78 (246)
T PRK05599 2 SILILGG-TSDIAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTH--RELVKQTQELAGEI 78 (246)
T ss_pred eEEEEeC-ccHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHH--HHHHHHHHHhcCCC
Confidence 3565555 56678888876656788999999999999888888776654577888888765211 000 0011112578
Q ss_pred cEEEEcC
Q psy17793 167 DRILLDA 173 (397)
Q Consensus 167 D~Il~Dp 173 (397)
|.++.++
T Consensus 79 d~lv~na 85 (246)
T PRK05599 79 SLAVVAF 85 (246)
T ss_pred CEEEEec
Confidence 9999865
No 303
>KOG1331|consensus
Probab=90.31 E-value=0.53 Score=45.77 Aligned_cols=97 Identities=22% Similarity=0.260 Sum_probs=63.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793 84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK 163 (397)
Q Consensus 84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~ 163 (397)
..|..++|.|||-|-.+. ..+...++++|++..-+..+++ -|.. .+..+|+.+++ +..
T Consensus 44 ~~gsv~~d~gCGngky~~-----~~p~~~~ig~D~c~~l~~~ak~----~~~~--~~~~ad~l~~p-----------~~~ 101 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLG-----VNPLCLIIGCDLCTGLLGGAKR----SGGD--NVCRADALKLP-----------FRE 101 (293)
T ss_pred CCcceeeecccCCcccCc-----CCCcceeeecchhhhhcccccc----CCCc--eeehhhhhcCC-----------CCC
Confidence 348899999999996552 2245578999988776655442 2321 56778888774 456
Q ss_pred cCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHH--HHHHHHHHHhhhhccccccccccccCCcE-EEEE
Q psy17793 164 ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYAN--IQKKLLQAVYRFVSLFDWQGIPLLKKDGI-LVYC 235 (397)
Q Consensus 164 ~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~--~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~-lvys 235 (397)
.+||.++. -..+.+++. .-..++++ ..+.|+|||. ++|+
T Consensus 102 ~s~d~~ls----------------------iavihhlsT~~RR~~~l~e-----------~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 102 ESFDAALS----------------------IAVIHHLSTRERRERALEE-----------LLRVLRPGGNALVYV 143 (293)
T ss_pred Cccccchh----------------------hhhhhhhhhHHHHHHHHHH-----------HHHHhcCCCceEEEE
Confidence 78998875 122222221 11566777 8889999996 6775
No 304
>KOG3201|consensus
Probab=89.76 E-value=0.28 Score=43.99 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=33.1
Q ss_pred CCCeEEEEcCCCChHH-HHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh
Q psy17793 85 PGQKVLDMCAAPGNKL-THIALLMNDTGTLIALDKSKPRVTKLEETIKKL 133 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt-~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~ 133 (397)
.|.+||++|+|--+.+ +++|-. .+...|+--|-+...++.+++...++
T Consensus 29 rg~~ilelgggft~laglmia~~-a~~~~v~ltdgne~svrnv~ki~~~n 77 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACK-APDSSVWLTDGNEESVRNVEKIRNSN 77 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeee-cCCceEEEecCCHHHHHHHHHHHhcc
Confidence 3678999997744333 333333 35678999999999988887766555
No 305
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.45 E-value=9.4 Score=35.98 Aligned_cols=86 Identities=12% Similarity=-0.048 Sum_probs=51.4
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhh
Q psy17793 85 PGQKVLDMCAAP-GNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKL 161 (397)
Q Consensus 85 ~g~~VLDlcagp-G~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~ 161 (397)
.|..+|=.|+++ ++.+..+|..+. .+.+|+.++.+....+.+++..+..+ .+.++..|..+...-. ..+.-..
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~-- 84 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD--APIFLPLDVREPGQLEAVFARIAE-- 84 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc--cceEEecCcCCHHHHHHHHHHHHH--
Confidence 477899999998 488888886543 45678888888655444444444433 3456677876542100 0011011
Q ss_pred cccCccEEEEcCC
Q psy17793 162 QKESFDRILLDAP 174 (397)
Q Consensus 162 ~~~~fD~Il~DpP 174 (397)
.-++.|+++.++-
T Consensus 85 ~~g~ld~lv~nAg 97 (258)
T PRK07533 85 EWGRLDFLLHSIA 97 (258)
T ss_pred HcCCCCEEEEcCc
Confidence 1257899998763
No 306
>PRK08339 short chain dehydrogenase; Provisional
Probab=89.20 E-value=9.4 Score=36.15 Aligned_cols=86 Identities=15% Similarity=0.192 Sum_probs=53.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK 163 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~ 163 (397)
.|..+|=.|++ |+.+..+|..+ ..+.+|+.++.++..++.+.+.++...-.++.++..|..+...-... ..... .-
T Consensus 7 ~~k~~lItGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~-~~~~~-~~ 83 (263)
T PRK08339 7 SGKLAFTTASS-KGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERT-VKELK-NI 83 (263)
T ss_pred CCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHH-HHHHH-hh
Confidence 36677766655 56677777654 34568999999999888877776554223577888888764210000 00000 12
Q ss_pred cCccEEEEcC
Q psy17793 164 ESFDRILLDA 173 (397)
Q Consensus 164 ~~fD~Il~Dp 173 (397)
+.+|.++.++
T Consensus 84 g~iD~lv~na 93 (263)
T PRK08339 84 GEPDIFFFST 93 (263)
T ss_pred CCCcEEEECC
Confidence 5689988755
No 307
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=89.16 E-value=3 Score=44.19 Aligned_cols=48 Identities=19% Similarity=0.133 Sum_probs=36.8
Q ss_pred CCCCCeEEEEcCCCChH-HHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy17793 83 VQPGQKVLDMCAAPGNK-LTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS 136 (397)
Q Consensus 83 ~~~g~~VLDlcagpG~k-t~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~ 136 (397)
..++++|+=+|||+=|. ++..|..++ ..|+++|.++.+++.+++ +|.+
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aes----lGA~ 210 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVES----MGAE 210 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCe
Confidence 45799999999999554 455666653 479999999999887654 6765
No 308
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=88.96 E-value=2.3 Score=42.26 Aligned_cols=48 Identities=17% Similarity=0.228 Sum_probs=32.0
Q ss_pred CCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeC---CHHHHHHHHHHHHHhCCC
Q psy17793 83 VQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDK---SKPRVTKLEETIKKLQLS 136 (397)
Q Consensus 83 ~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~---s~~rl~~l~~n~~~~g~~ 136 (397)
.++|++||=.|+|+ |..+.++|..+ +.+|++++. ++.+++.+ +++|.+
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~--G~~vi~~~~~~~~~~~~~~~----~~~Ga~ 221 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLR--GFEVYVLNRRDPPDPKADIV----EELGAT 221 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHH----HHcCCE
Confidence 46789999887643 33455566654 347999987 67776654 456764
No 309
>PRK05867 short chain dehydrogenase; Provisional
Probab=88.87 E-value=6.5 Score=36.71 Aligned_cols=86 Identities=13% Similarity=0.148 Sum_probs=55.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQ 162 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~ 162 (397)
.|..+|=.|++ |+.+.+++..+ ..+.+|+.++.+++.++.+.+.++..+ .++..+..|..+...- ... ......
T Consensus 8 ~~k~vlVtGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~--~~~~~~~~~~ 83 (253)
T PRK05867 8 HGKRALITGAS-TGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG-GKVVPVCCDVSQHQQV--TSMLDQVTAE 83 (253)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC-CeEEEEEccCCCHHHH--HHHHHHHHHH
Confidence 36788877765 56677777654 345689999999998888877777665 3577788888654210 000 000011
Q ss_pred ccCccEEEEcCC
Q psy17793 163 KESFDRILLDAP 174 (397)
Q Consensus 163 ~~~fD~Il~DpP 174 (397)
-+.+|.++.++-
T Consensus 84 ~g~id~lv~~ag 95 (253)
T PRK05867 84 LGGIDIAVCNAG 95 (253)
T ss_pred hCCCCEEEECCC
Confidence 257899998764
No 310
>PRK06172 short chain dehydrogenase; Provisional
Probab=88.50 E-value=13 Score=34.49 Aligned_cols=85 Identities=14% Similarity=0.093 Sum_probs=54.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQ 162 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~ 162 (397)
.+.++|=.|+ +|+.+..++..+ ..+.+|+.++.++..++.+.+.++..+ .++.++..|..+...- .+. ......
T Consensus 6 ~~k~ilItGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~i--~~~~~~~~~~ 81 (253)
T PRK06172 6 SGKVALVTGG-AAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAG-GEALFVACDVTRDAEV--KALVEQTIAA 81 (253)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-CceEEEEcCCCCHHHH--HHHHHHHHHH
Confidence 3567888875 566777777644 345689999999998888877777665 3578888898764210 000 000011
Q ss_pred ccCccEEEEcC
Q psy17793 163 KESFDRILLDA 173 (397)
Q Consensus 163 ~~~fD~Il~Dp 173 (397)
.+++|.|+..+
T Consensus 82 ~g~id~li~~a 92 (253)
T PRK06172 82 YGRLDYAFNNA 92 (253)
T ss_pred hCCCCEEEECC
Confidence 24689999855
No 311
>PRK07677 short chain dehydrogenase; Provisional
Probab=88.13 E-value=11 Score=35.22 Aligned_cols=86 Identities=9% Similarity=0.113 Sum_probs=52.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhhcc
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKLQK 163 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~~~ 163 (397)
|.++|=.|+ +|+.+.+++..+ ..+.+|++++.++.+++.+.+.++..+ .++.++..|..+...-. ..+.... .-
T Consensus 1 ~k~~lItG~-s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~--~~ 76 (252)
T PRK07677 1 EKVVIITGG-SSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP-GQVLTVQMDVRNPEDVQKMVEQIDE--KF 76 (252)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEecCCCHHHHHHHHHHHHH--Hh
Confidence 346776665 455677677654 345689999999988888777776555 45778888886532000 0000001 11
Q ss_pred cCccEEEEcCCC
Q psy17793 164 ESFDRILLDAPC 175 (397)
Q Consensus 164 ~~fD~Il~DpPC 175 (397)
+..|.|+.++-.
T Consensus 77 ~~id~lI~~ag~ 88 (252)
T PRK07677 77 GRIDALINNAAG 88 (252)
T ss_pred CCccEEEECCCC
Confidence 468999987643
No 312
>PRK06914 short chain dehydrogenase; Provisional
Probab=88.00 E-value=12 Score=35.46 Aligned_cols=87 Identities=15% Similarity=0.103 Sum_probs=53.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEEcccccccccchhhHHHhhhcc
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQL-SSIQTHVYDSTRINTSSQIDIERMKLQK 163 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~-~~v~~~~~D~~~~~~~~~~d~~~~~~~~ 163 (397)
+..+|=.| |+|+.+.+++..+ ..+..|++++.++..++.+.+.+...+. .++.++..|.++...-. ........-
T Consensus 3 ~k~~lItG-asg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~--~~~~~~~~~ 79 (280)
T PRK06914 3 KKIAIVTG-ASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIH--NFQLVLKEI 79 (280)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHH--HHHHHHHhc
Confidence 44566666 5566777777643 4456899999999888877766666554 35888888987642100 000000112
Q ss_pred cCccEEEEcCCC
Q psy17793 164 ESFDRILLDAPC 175 (397)
Q Consensus 164 ~~fD~Il~DpPC 175 (397)
+..|.|+..+-.
T Consensus 80 ~~id~vv~~ag~ 91 (280)
T PRK06914 80 GRIDLLVNNAGY 91 (280)
T ss_pred CCeeEEEECCcc
Confidence 468999986643
No 313
>PRK06701 short chain dehydrogenase; Provisional
Probab=87.99 E-value=12 Score=36.10 Aligned_cols=86 Identities=12% Similarity=0.064 Sum_probs=49.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCH-HHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhh
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSK-PRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKL 161 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~-~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~ 161 (397)
.+.++|=.|+ +|+.+.+++..+ ..+.+|+.++.++ ...+.+...++..+ .++.++..|..+...- .+. .....
T Consensus 45 ~~k~iLItGa-sggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~--~~~~~~i~~ 120 (290)
T PRK06701 45 KGKVALITGG-DSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEG-VKCLLIPGDVSDEAFC--KDAVEETVR 120 (290)
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC-CeEEEEEccCCCHHHH--HHHHHHHHH
Confidence 4667888875 566677777654 3456788888775 34555555555544 3577888888754210 000 00000
Q ss_pred cccCccEEEEcCC
Q psy17793 162 QKESFDRILLDAP 174 (397)
Q Consensus 162 ~~~~fD~Il~DpP 174 (397)
.-+.+|.|+.++-
T Consensus 121 ~~~~iD~lI~~Ag 133 (290)
T PRK06701 121 ELGRLDILVNNAA 133 (290)
T ss_pred HcCCCCEEEECCc
Confidence 1146899998653
No 314
>PRK06940 short chain dehydrogenase; Provisional
Probab=87.90 E-value=12 Score=35.81 Aligned_cols=81 Identities=12% Similarity=0.131 Sum_probs=52.6
Q ss_pred eEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhcccCc
Q psy17793 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQKESF 166 (397)
Q Consensus 88 ~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~~~~f 166 (397)
.+|=.|+ |+.+.++|..+..+.+|+.+|.++..++.+.+.++..+. ++.++..|..+...- ... .... ..+.+
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~i--~~~~~~~~-~~g~i 77 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGF-DVSTQEVDVSSRESV--KALAATAQ-TLGPV 77 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEeecCCHHHH--HHHHHHHH-hcCCC
Confidence 4554554 689999998776667899999998887777666665443 467788888764210 000 0001 12568
Q ss_pred cEEEEcCC
Q psy17793 167 DRILLDAP 174 (397)
Q Consensus 167 D~Il~DpP 174 (397)
|.++.++-
T Consensus 78 d~li~nAG 85 (275)
T PRK06940 78 TGLVHTAG 85 (275)
T ss_pred CEEEECCC
Confidence 99998764
No 315
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=87.87 E-value=1.2 Score=42.59 Aligned_cols=74 Identities=16% Similarity=0.223 Sum_probs=40.6
Q ss_pred EcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccCccEEEE
Q psy17793 92 MCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILL 171 (397)
Q Consensus 92 lcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~ 171 (397)
+...||+-.+ ++.++...-+.+.+|+.+.-.+.+++++... .+|++...|+...... .-++ ..+=-+||+
T Consensus 62 l~~YPGSP~i-a~~llR~qDrl~l~ELHp~d~~~L~~~~~~~--~~v~v~~~DG~~~l~a-----llPP--~~rRglVLI 131 (245)
T PF04378_consen 62 LRFYPGSPAI-AARLLREQDRLVLFELHPQDFEALKKNFRRD--RRVRVHHRDGYEGLKA-----LLPP--PERRGLVLI 131 (245)
T ss_dssp --EEE-HHHH-HHHHS-TTSEEEEE--SHHHHHHHTTS--TT--S-EEEE-S-HHHHHHH-----H-S---TTS-EEEEE
T ss_pred cCcCCCCHHH-HHHhCCccceEEEEecCchHHHHHHHHhccC--CccEEEeCchhhhhhh-----hCCC--CCCCeEEEE
Confidence 5578888765 4445567789999999999999999988753 5799999998764311 0111 123469999
Q ss_pred cCCC
Q psy17793 172 DAPC 175 (397)
Q Consensus 172 DpPC 175 (397)
|||+
T Consensus 132 DPpY 135 (245)
T PF04378_consen 132 DPPY 135 (245)
T ss_dssp ----
T ss_pred CCCC
Confidence 9993
No 316
>KOG2352|consensus
Probab=87.70 E-value=3.2 Score=43.33 Aligned_cols=114 Identities=17% Similarity=0.157 Sum_probs=74.0
Q ss_pred CCCC-eEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhc
Q psy17793 84 QPGQ-KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ 162 (397)
Q Consensus 84 ~~g~-~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~ 162 (397)
++-. ++|-+|||.=-.+.++-+ ++--.|+.+|.|+.+++.....-. ..-.-..+...|.+... |+
T Consensus 46 ~p~~~~~l~lGCGNS~l~e~ly~--~G~~dI~~iD~S~V~V~~m~~~~~-~~~~~~~~~~~d~~~l~-----------fe 111 (482)
T KOG2352|consen 46 SPSDFKILQLGCGNSELSEHLYK--NGFEDITNIDSSSVVVAAMQVRNA-KERPEMQMVEMDMDQLV-----------FE 111 (482)
T ss_pred chhhceeEeecCCCCHHHHHHHh--cCCCCceeccccHHHHHHHHhccc-cCCcceEEEEecchhcc-----------CC
Confidence 3444 899999998877777665 334569999999999988765432 12233778888887764 67
Q ss_pred ccCccEEEEcCCCCCCC--CCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEec
Q psy17793 163 KESFDRILLDAPCSGFG--QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC 237 (397)
Q Consensus 163 ~~~fD~Il~DpPCSg~G--~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTC 237 (397)
.++||+|+.= |+. .-.+....|. . ..-...+.. ..++|++||+.+-.||
T Consensus 112 dESFdiVIdk----GtlDal~~de~a~~~---------~--~~v~~~~~e-----------Vsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 112 DESFDIVIDK----GTLDALFEDEDALLN---------T--AHVSNMLDE-----------VSRVLAPGGKYISVTL 162 (482)
T ss_pred CcceeEEEec----CccccccCCchhhhh---------h--HHhhHHHhh-----------HHHHhccCCEEEEEEe
Confidence 7899999851 111 0000000110 0 111345666 8899999999999988
No 317
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.61 E-value=14 Score=34.81 Aligned_cols=88 Identities=14% Similarity=0.011 Sum_probs=50.2
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhh
Q psy17793 85 PGQKVLDMCAAP-GNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKL 161 (397)
Q Consensus 85 ~g~~VLDlcagp-G~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~ 161 (397)
.|..+|=.|+++ ++.+..+|..+. .+.+|+.++.+....+.+++..+...-.++.++..|..+...- ... .....
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v--~~~~~~~~~ 83 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEI--TACFETIKE 83 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHH--HHHHHHHHH
Confidence 467899999884 888888887653 4567887765432223333333333223567778888754210 000 00001
Q ss_pred cccCccEEEEcCC
Q psy17793 162 QKESFDRILLDAP 174 (397)
Q Consensus 162 ~~~~fD~Il~DpP 174 (397)
.-+++|.++.++-
T Consensus 84 ~~g~ld~lv~nag 96 (257)
T PRK08594 84 EVGVIHGVAHCIA 96 (257)
T ss_pred hCCCccEEEECcc
Confidence 1267899988663
No 318
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=87.59 E-value=3.5 Score=41.02 Aligned_cols=51 Identities=18% Similarity=0.197 Sum_probs=34.2
Q ss_pred cCCCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy17793 81 LDVQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS 136 (397)
Q Consensus 81 L~~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~ 136 (397)
...++|++||=.|+|+ |..+.++|..+ +..+|+++|.++.+.+.++ ++|.+
T Consensus 172 ~~~~~g~~VlV~G~g~vG~~a~~~ak~~-G~~~Vi~~~~~~~~~~~~~----~~Ga~ 223 (358)
T TIGR03451 172 GGVKRGDSVAVIGCGGVGDAAIAGAALA-GASKIIAVDIDDRKLEWAR----EFGAT 223 (358)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHH----HcCCc
Confidence 3567899999886533 33344555554 2235999999999988774 46764
No 319
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=87.59 E-value=1.1 Score=38.39 Aligned_cols=78 Identities=18% Similarity=0.186 Sum_probs=46.9
Q ss_pred EEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhcc
Q psy17793 138 IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSL 217 (397)
Q Consensus 138 v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~ 217 (397)
+++..+|+..... .....||.|.+|+= +-..+|+ .|+ .+++..
T Consensus 33 L~L~~gDa~~~l~----------~l~~~~Da~ylDgF--sP~~nPe---lWs---------------~e~~~~------- 75 (124)
T PF05430_consen 33 LTLWFGDAREMLP----------QLDARFDAWYLDGF--SPAKNPE---LWS---------------EELFKK------- 75 (124)
T ss_dssp EEEEES-HHHHHH----------HB-T-EEEEEE-SS---TTTSGG---GSS---------------HHHHHH-------
T ss_pred EEEEEcHHHHHHH----------hCcccCCEEEecCC--CCcCCcc---cCC---------------HHHHHH-------
Confidence 4566677765431 12368999999972 1123444 355 455666
Q ss_pred ccccccccccCCcEEEEEecCCCccccHHHHHHHHHHCCCcEEEecC
Q psy17793 218 FDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL 264 (397)
Q Consensus 218 ~~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~~~ 264 (397)
..+++++||+++--|++ ..|+..|... +|.+....
T Consensus 76 ----l~~~~~~~~~l~Tys~a-------~~Vr~~L~~a-GF~v~~~~ 110 (124)
T PF05430_consen 76 ----LARLSKPGGTLATYSSA-------GAVRRALQQA-GFEVEKVP 110 (124)
T ss_dssp ----HHHHEEEEEEEEES--B-------HHHHHHHHHC-TEEEEEEE
T ss_pred ----HHHHhCCCcEEEEeech-------HHHHHHHHHc-CCEEEEcC
Confidence 77889999988654443 4688999888 68876543
No 320
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=87.53 E-value=4.2 Score=39.03 Aligned_cols=123 Identities=12% Similarity=0.149 Sum_probs=72.8
Q ss_pred CeEEEEcCCCChHHHHHHHHcC----CCcEEEEEeCCH--------------------------HHHHHHHHHHHHhCC-
Q psy17793 87 QKVLDMCAAPGNKLTHIALLMN----DTGTLIALDKSK--------------------------PRVTKLEETIKKLQL- 135 (397)
Q Consensus 87 ~~VLDlcagpG~kt~~lA~~~~----~~~~V~avD~s~--------------------------~rl~~l~~n~~~~g~- 135 (397)
..|+++|+.-|+.++.++..+. ..-+|+++|.=. ..++..++|+.++|+
T Consensus 76 GdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl~ 155 (248)
T PF05711_consen 76 GDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGLL 155 (248)
T ss_dssp SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTTS
T ss_pred eEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCCC
Confidence 3699999999998877766542 234688887421 135566677777776
Q ss_pred -CcEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhh
Q psy17793 136 -SSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRF 214 (397)
Q Consensus 136 -~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f 214 (397)
++++++.+++.+.... .+.+++-++-+|.- + +... +..|+.
T Consensus 156 ~~~v~~vkG~F~dTLp~---------~p~~~IAll~lD~D----------------------l--YesT-~~aLe~---- 197 (248)
T PF05711_consen 156 DDNVRFVKGWFPDTLPD---------APIERIALLHLDCD----------------------L--YEST-KDALEF---- 197 (248)
T ss_dssp STTEEEEES-HHHHCCC----------TT--EEEEEE-------------------------S--HHHH-HHHHHH----
T ss_pred cccEEEECCcchhhhcc---------CCCccEEEEEEecc----------------------c--hHHH-HHHHHH----
Confidence 4699999888654321 22344555555431 1 1111 566777
Q ss_pred hccccccccccccCCcEEEEEecCCCccccHHHHHHHHHHCC
Q psy17793 215 VSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHP 256 (397)
Q Consensus 215 ~~~~~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~ 256 (397)
.+..|.+||+|++-.-.. ..-...|..+.+++.
T Consensus 198 -------lyprl~~GGiIi~DDY~~--~gcr~AvdeF~~~~g 230 (248)
T PF05711_consen 198 -------LYPRLSPGGIIIFDDYGH--PGCRKAVDEFRAEHG 230 (248)
T ss_dssp -------HGGGEEEEEEEEESSTTT--HHHHHHHHHHHHHTT
T ss_pred -------HHhhcCCCeEEEEeCCCC--hHHHHHHHHHHHHcC
Confidence 888999999999875444 333456788888874
No 321
>PRK07102 short chain dehydrogenase; Provisional
Probab=87.34 E-value=13 Score=34.43 Aligned_cols=82 Identities=15% Similarity=0.150 Sum_probs=52.7
Q ss_pred eEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccCc
Q psy17793 88 KVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESF 166 (397)
Q Consensus 88 ~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~f 166 (397)
+||=.| |+|+.+.+++..+. .+.+|++++.++...+.+.+.+...+-.++.++..|..+...- .+. .......+
T Consensus 3 ~vlItG-as~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~--~~~--~~~~~~~~ 77 (243)
T PRK07102 3 KILIIG-ATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASH--AAF--LDSLPALP 77 (243)
T ss_pred EEEEEc-CCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHH--HHH--HHHHhhcC
Confidence 566555 56788888887553 4558999999998887766666554445788889998765210 000 00011357
Q ss_pred cEEEEcCC
Q psy17793 167 DRILLDAP 174 (397)
Q Consensus 167 D~Il~DpP 174 (397)
|.|+.++.
T Consensus 78 d~vv~~ag 85 (243)
T PRK07102 78 DIVLIAVG 85 (243)
T ss_pred CEEEECCc
Confidence 99998764
No 322
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=87.23 E-value=1.6 Score=42.25 Aligned_cols=70 Identities=16% Similarity=0.262 Sum_probs=50.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhc
Q psy17793 83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ 162 (397)
Q Consensus 83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~ 162 (397)
..+|..-.|+||+|||.|-++.. ..-.|+|+|.-+-+- ++-.. ..|+-...|..++-. .
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVk---r~m~V~aVDng~ma~-----sL~dt--g~v~h~r~DGfk~~P-----------~ 267 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVK---RNMRVYAVDNGPMAQ-----SLMDT--GQVTHLREDGFKFRP-----------T 267 (358)
T ss_pred hcCCceeeecccCCCccchhhhh---cceEEEEeccchhhh-----hhhcc--cceeeeeccCccccc-----------C
Confidence 45889999999999999988776 457899999765432 22222 347778888887731 2
Q ss_pred ccCccEEEEcC
Q psy17793 163 KESFDRILLDA 173 (397)
Q Consensus 163 ~~~fD~Il~Dp 173 (397)
..+.|-.+||-
T Consensus 268 r~~idWmVCDm 278 (358)
T COG2933 268 RSNIDWMVCDM 278 (358)
T ss_pred CCCCceEEeeh
Confidence 45789888864
No 323
>PRK12939 short chain dehydrogenase; Provisional
Probab=86.91 E-value=15 Score=33.73 Aligned_cols=85 Identities=12% Similarity=0.075 Sum_probs=53.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQ 162 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~ 162 (397)
++..+|=.| |+|+.+.+++..+. .+.+|++++.++..++.+.+.++..+ .++.++..|..+...- ... ......
T Consensus 6 ~~~~vlItG-a~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~--~~~~~~~~~~ 81 (250)
T PRK12939 6 AGKRALVTG-AARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG-GRAHAIAADLADPASV--QRFFDAAAAA 81 (250)
T ss_pred CCCEEEEeC-CCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHH--HHHHHHHHHH
Confidence 356777444 57888888887653 34689999999888887776666554 3588888898754210 000 000001
Q ss_pred ccCccEEEEcC
Q psy17793 163 KESFDRILLDA 173 (397)
Q Consensus 163 ~~~fD~Il~Dp 173 (397)
-+.+|.|+..+
T Consensus 82 ~~~id~vi~~a 92 (250)
T PRK12939 82 LGGLDGLVNNA 92 (250)
T ss_pred cCCCCEEEECC
Confidence 14689999854
No 324
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=86.85 E-value=4.9 Score=37.71 Aligned_cols=93 Identities=10% Similarity=0.154 Sum_probs=60.8
Q ss_pred echhHHHHHhccCCCCCCeEEEEcCCCCh--HHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEccc
Q psy17793 70 QNLPSILAGHYLDVQPGQKVLDMCAAPGN--KLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDS 145 (397)
Q Consensus 70 Qd~~S~l~~~~L~~~~g~~VLDlcagpG~--kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~ 145 (397)
+...+-|++.+..=..-..+++.+++-|. .|+.||... ..+|+++++-.+++.+...++.+..+|+.+ ++++.+|.
T Consensus 26 ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~ 105 (218)
T PF07279_consen 26 EPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEA 105 (218)
T ss_pred CCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCC
Confidence 33344455444433345688999776443 344443321 457899999999999888899998888866 68888875
Q ss_pred cc-ccccchhhHHHhhhcccCccEEEEcC
Q psy17793 146 TR-INTSSQIDIERMKLQKESFDRILLDA 173 (397)
Q Consensus 146 ~~-~~~~~~~d~~~~~~~~~~fD~Il~Dp 173 (397)
.. +. +.+ ..+|.+++|-
T Consensus 106 ~e~~~---------~~~--~~iDF~vVDc 123 (218)
T PF07279_consen 106 PEEVM---------PGL--KGIDFVVVDC 123 (218)
T ss_pred HHHHH---------hhc--cCCCEEEEeC
Confidence 32 22 113 4689999974
No 325
>PRK07576 short chain dehydrogenase; Provisional
Probab=86.83 E-value=17 Score=34.33 Aligned_cols=85 Identities=11% Similarity=0.048 Sum_probs=53.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQ 162 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~ 162 (397)
++.++|=.|+ +|+.+.+++..+. .+.+|++++.++..++.+.+.+...+. ++.++..|.++...- ... ......
T Consensus 8 ~~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~i--~~~~~~~~~~ 83 (264)
T PRK07576 8 AGKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGP-EGLGVSADVRDYAAV--EAAFAQIADE 83 (264)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC-ceEEEECCCCCHHHH--HHHHHHHHHH
Confidence 4678888875 6777777776443 455899999998888777666666543 467778888653200 000 000001
Q ss_pred ccCccEEEEcC
Q psy17793 163 KESFDRILLDA 173 (397)
Q Consensus 163 ~~~fD~Il~Dp 173 (397)
.+.+|.++.++
T Consensus 84 ~~~iD~vi~~a 94 (264)
T PRK07576 84 FGPIDVLVSGA 94 (264)
T ss_pred cCCCCEEEECC
Confidence 24689999866
No 326
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=86.49 E-value=16 Score=33.86 Aligned_cols=91 Identities=14% Similarity=0.113 Sum_probs=57.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhh
Q psy17793 83 VQPGQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMK 160 (397)
Q Consensus 83 ~~~g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~ 160 (397)
..++..||=.| |+|+.+..++..+. .+.+|++++.++...+.+.+.++..+..++.++..|..........+. ....
T Consensus 9 ~~~~k~vlItG-~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (247)
T PRK08945 9 LLKDRIILVTG-AGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIE 87 (247)
T ss_pred ccCCCEEEEeC-CCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHH
Confidence 34577888777 46777877776543 345899999999888888777777765566777777753211100000 0000
Q ss_pred hcccCccEEEEcCC
Q psy17793 161 LQKESFDRILLDAP 174 (397)
Q Consensus 161 ~~~~~fD~Il~DpP 174 (397)
...+++|.|+..+-
T Consensus 88 ~~~~~id~vi~~Ag 101 (247)
T PRK08945 88 EQFGRLDGVLHNAG 101 (247)
T ss_pred HHhCCCCEEEECCc
Confidence 11246899998664
No 327
>KOG2940|consensus
Probab=86.45 E-value=0.52 Score=44.63 Aligned_cols=82 Identities=18% Similarity=0.222 Sum_probs=54.9
Q ss_pred HHHHhccCCC-CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccch
Q psy17793 75 ILAGHYLDVQ-PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQ 153 (397)
Q Consensus 75 ~l~~~~L~~~-~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~ 153 (397)
.++-.+.+.+ ....++|+||+-|...-|+... +-.+++-+|.|-.+++.++.. +..++. +.....|-..+
T Consensus 61 rlaDrvfD~kk~fp~a~diGcs~G~v~rhl~~e--~vekli~~DtS~~M~~s~~~~-qdp~i~-~~~~v~DEE~L----- 131 (325)
T KOG2940|consen 61 RLADRVFDCKKSFPTAFDIGCSLGAVKRHLRGE--GVEKLIMMDTSYDMIKSCRDA-QDPSIE-TSYFVGDEEFL----- 131 (325)
T ss_pred HHHHHHHHHhhhCcceeecccchhhhhHHHHhc--chhheeeeecchHHHHHhhcc-CCCceE-EEEEecchhcc-----
Confidence 3444444443 4568999999999999998774 567899999999999887642 112221 23334444333
Q ss_pred hhHHHhhhcccCccEEEE
Q psy17793 154 IDIERMKLQKESFDRILL 171 (397)
Q Consensus 154 ~d~~~~~~~~~~fD~Il~ 171 (397)
+|...+||+|+.
T Consensus 132 ------df~ens~DLiis 143 (325)
T KOG2940|consen 132 ------DFKENSVDLIIS 143 (325)
T ss_pred ------cccccchhhhhh
Confidence 367789999985
No 328
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=86.36 E-value=2.1 Score=41.47 Aligned_cols=62 Identities=8% Similarity=0.077 Sum_probs=42.0
Q ss_pred CeEEEEcCCC--ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccc
Q psy17793 87 QKVLDMCAAP--GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRI 148 (397)
Q Consensus 87 ~~VLDlcagp--G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~ 148 (397)
..+||+|||- -+-+-++|+...+..+|+-+|.+|-.+..++..+....-....++.+|.++.
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p 133 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDP 133 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-H
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCH
Confidence 5899999984 3446678888888999999999999999888887765422378999999865
No 329
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=86.32 E-value=6.9 Score=37.87 Aligned_cols=49 Identities=27% Similarity=0.391 Sum_probs=34.2
Q ss_pred CCCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy17793 82 DVQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS 136 (397)
Q Consensus 82 ~~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~ 136 (397)
..+++++||..++|. |..+.++|... +.+|++++.++.+.+.++ ++|++
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~--G~~V~~~~~s~~~~~~~~----~~g~~ 211 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAM--GAAVIAVDIKEEKLELAK----ELGAD 211 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHH----HhCCC
Confidence 467888999875542 55666667764 357999999998877664 35664
No 330
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=86.23 E-value=15 Score=34.20 Aligned_cols=86 Identities=14% Similarity=0.159 Sum_probs=55.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQ 162 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~ 162 (397)
.|.+||=.| |+|+.+..++..+ ..+.+|+..+.++..++.+.+.++..|. ++..+..|..+...- ... ......
T Consensus 9 ~~k~vlItG-a~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~D~~~~~~~--~~~~~~~~~~ 84 (255)
T PRK07523 9 TGRRALVTG-SSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGL-SAHALAFDVTDHDAV--RAAIDAFEAE 84 (255)
T ss_pred CCCEEEEEC-CcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCc-eEEEEEccCCCHHHH--HHHHHHHHHh
Confidence 467888777 4677888887754 3456899999999888877777766553 467778888754210 000 000111
Q ss_pred ccCccEEEEcCC
Q psy17793 163 KESFDRILLDAP 174 (397)
Q Consensus 163 ~~~fD~Il~DpP 174 (397)
-+..|.|+..+-
T Consensus 85 ~~~~d~li~~ag 96 (255)
T PRK07523 85 IGPIDILVNNAG 96 (255)
T ss_pred cCCCCEEEECCC
Confidence 246899998664
No 331
>KOG1122|consensus
Probab=86.03 E-value=0.25 Score=50.44 Aligned_cols=60 Identities=13% Similarity=0.071 Sum_probs=41.5
Q ss_pred CccccCCCCCcceeeCccccCCcccCCCCeEEEechhhhhhhhcccceecccccccCCCCCCC
Q psy17793 317 PEIYIHPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFAPGVLAMPLGKNSY 379 (397)
Q Consensus 317 ~ev~~hp~l~dvl~i~p~~~~~~~~~~~~~~v~vd~~c~~a~LrGa~v~~pg~~~~~~~~~~~ 379 (397)
++..++.++-+..+++ ..+.-+++...+. +++.+|+.+.+||+|+|+||+..|+.+..-+
T Consensus 90 ~P~L~~v~~~~~~~~~-~l~dfk~l~~~~~--~~~~~~~~l~~~~~~~y~y~~~l~~~~~e~~ 149 (460)
T KOG1122|consen 90 VPDLQNVDLRIVELVP-VLGDFKNLKEPGR--LRSEYCGQLKKDGAHYYAYGVFLAEKLMELF 149 (460)
T ss_pred CCccchhhHHhhhhhh-hhcchhccccccc--chhhHHHHHHhcccceechHHHHHHHhcccc
Confidence 3344444444444444 3433444444444 8999999999999999999999999988754
No 332
>PRK07831 short chain dehydrogenase; Provisional
Probab=85.82 E-value=20 Score=33.50 Aligned_cols=88 Identities=17% Similarity=0.156 Sum_probs=54.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHH-hCCCcEEEEEcccccccccchhhH-HHhhh
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKK-LQLSSIQTHVYDSTRINTSSQIDI-ERMKL 161 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~-~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~ 161 (397)
.+.++|=.|++..+.+..++..+ ..+..|+.+|.++.+++...+.+++ ++..++.++..|..+...- ... .....
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~--~~~~~~~~~ 93 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQV--DALIDAAVE 93 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHH--HHHHHHHHH
Confidence 46678877765325666666544 2456799999999888887777665 4545678888888754210 000 00000
Q ss_pred cccCccEEEEcCC
Q psy17793 162 QKESFDRILLDAP 174 (397)
Q Consensus 162 ~~~~fD~Il~DpP 174 (397)
..+..|.++.++-
T Consensus 94 ~~g~id~li~~ag 106 (262)
T PRK07831 94 RLGRLDVLVNNAG 106 (262)
T ss_pred HcCCCCEEEECCC
Confidence 1146899998664
No 333
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=85.67 E-value=21 Score=30.70 Aligned_cols=84 Identities=17% Similarity=0.097 Sum_probs=52.6
Q ss_pred EEEEcCCCChHHHHHHHHcC--CCcEEEEEeCC--HHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhccc
Q psy17793 89 VLDMCAAPGNKLTHIALLMN--DTGTLIALDKS--KPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE 164 (397)
Q Consensus 89 VLDlcagpG~kt~~lA~~~~--~~~~V~avD~s--~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~ 164 (397)
||=.|+ +|+.+..++..+. +...|+.+..+ ....+.+...++..+ .++.++..|..+...- ..-........+
T Consensus 3 ~lItGa-~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~-~~~~~~~~D~~~~~~~-~~~~~~~~~~~~ 79 (167)
T PF00106_consen 3 VLITGA-SSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG-AKITFIECDLSDPESI-RALIEEVIKRFG 79 (167)
T ss_dssp EEEETT-TSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT-SEEEEEESETTSHHHH-HHHHHHHHHHHS
T ss_pred EEEECC-CCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc-cccccccccccccccc-cccccccccccc
Confidence 444444 4667776766442 24578888888 788888888888777 6789999998754210 000011112236
Q ss_pred CccEEEEcCCC
Q psy17793 165 SFDRILLDAPC 175 (397)
Q Consensus 165 ~fD~Il~DpPC 175 (397)
.+|.++.++..
T Consensus 80 ~ld~li~~ag~ 90 (167)
T PF00106_consen 80 PLDILINNAGI 90 (167)
T ss_dssp SESEEEEECSC
T ss_pred ccccccccccc
Confidence 79999986653
No 334
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=85.56 E-value=22 Score=33.45 Aligned_cols=87 Identities=17% Similarity=0.068 Sum_probs=54.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccch-hhHHHhhhc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQ-IDIERMKLQ 162 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~-~d~~~~~~~ 162 (397)
.+.++|=.|++ |+.+.+++..+ ..+.+|+.++.++..++.+.+.+++.+. ++.++..|.++...-.. .+.... .
T Consensus 9 ~~k~~lItGa~-~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~--~ 84 (265)
T PRK07097 9 KGKIALITGAS-YGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGI-EAHGYVCDVTDEDGVQAMVSQIEK--E 84 (265)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHH--h
Confidence 45677777766 45566666543 3456898899999988888877776653 47788889875421000 000000 1
Q ss_pred ccCccEEEEcCCC
Q psy17793 163 KESFDRILLDAPC 175 (397)
Q Consensus 163 ~~~fD~Il~DpPC 175 (397)
-+.+|.++..+-.
T Consensus 85 ~~~id~li~~ag~ 97 (265)
T PRK07097 85 VGVIDILVNNAGI 97 (265)
T ss_pred CCCCCEEEECCCC
Confidence 1468999987653
No 335
>PLN02827 Alcohol dehydrogenase-like
Probab=85.50 E-value=4.6 Score=40.74 Aligned_cols=50 Identities=22% Similarity=0.252 Sum_probs=33.4
Q ss_pred cCCCCCCeEEEEcCCCChHHH---HHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793 81 LDVQPGQKVLDMCAAPGNKLT---HIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS 137 (397)
Q Consensus 81 L~~~~g~~VLDlcagpG~kt~---~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~ 137 (397)
.+.++|++||=.|+ |+.+. ++|..+ +...|+++|.++.+.+.+ +++|++.
T Consensus 189 ~~~~~g~~VlV~G~--G~vG~~~iqlak~~-G~~~vi~~~~~~~~~~~a----~~lGa~~ 241 (378)
T PLN02827 189 ADVSKGSSVVIFGL--GTVGLSVAQGAKLR-GASQIIGVDINPEKAEKA----KTFGVTD 241 (378)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHH----HHcCCcE
Confidence 45678999998865 44544 455544 233689999999887766 4467643
No 336
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=85.19 E-value=3.8 Score=39.84 Aligned_cols=42 Identities=17% Similarity=-0.080 Sum_probs=34.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHH
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEET 129 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n 129 (397)
...+||=-|||-|..+..+|.+ +-.+.|+|.|--|+-...-.
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~Mll~s~fi 97 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFMLLASNFI 97 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHHHHHHHHH
Confidence 4569999999999999999996 56899999999886554443
No 337
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=84.72 E-value=2.4 Score=43.23 Aligned_cols=65 Identities=18% Similarity=0.181 Sum_probs=45.0
Q ss_pred CCcEEEe-chhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHH
Q psy17793 64 SSMGILQ-NLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIK 131 (397)
Q Consensus 64 ~g~~~~Q-d~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~ 131 (397)
.++.|-| .+....--.+|++.++++||-+++|-.+...+++ .+..+|+|||+|+.....++=.+.
T Consensus 13 ~~lvY~~~WEDp~vD~~aL~i~~~d~vl~ItSaG~N~L~yL~---~~P~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 13 RGLVYAQCWEDPRVDMEALNIGPDDRVLTITSAGCNALDYLL---AGPKRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred cceeeccccCCcHHHHHHhCCCCCCeEEEEccCCchHHHHHh---cCCceEEEEeCCHHHHHHHHHHHH
Confidence 3444444 2333444578899999999999988555544433 367899999999999887764443
No 338
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=84.69 E-value=7.2 Score=38.81 Aligned_cols=52 Identities=23% Similarity=0.266 Sum_probs=37.3
Q ss_pred cCCCCCCeEEEEcC--CCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793 81 LDVQPGQKVLDMCA--APGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS 137 (397)
Q Consensus 81 L~~~~g~~VLDlca--gpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~ 137 (397)
..+++|++||=.|+ +-|..++++|..+ +.+|++++.++++.+.+++ .+|.+.
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~--G~~Vi~~~~~~~k~~~~~~---~lGa~~ 207 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAKLH--GCYVVGSAGSSQKVDLLKN---KLGFDE 207 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH---hcCCCE
Confidence 35688999988776 3566777788875 3579999999888766542 367654
No 339
>KOG1197|consensus
Probab=84.61 E-value=3 Score=40.33 Aligned_cols=65 Identities=22% Similarity=0.175 Sum_probs=40.0
Q ss_pred HhccCCCCCCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEccccc
Q psy17793 78 GHYLDVQPGQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTR 147 (397)
Q Consensus 78 ~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~ 147 (397)
-++-.+++|+.||= .++.||.++.+.+++. -+.++++.-.+.+..+.+++| |+.. |.....|..+
T Consensus 139 ~e~y~vkpGhtVlv-haAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~aken----G~~h~I~y~~eD~v~ 205 (336)
T KOG1197|consen 139 FEAYNVKPGHTVLV-HAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKEN----GAEHPIDYSTEDYVD 205 (336)
T ss_pred HHhcCCCCCCEEEE-EeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHHhc----CCcceeeccchhHHH
Confidence 33446899999884 3444555555555442 245777777777777777665 7654 5555555543
No 340
>PRK08324 short chain dehydrogenase; Validated
Probab=84.53 E-value=12 Score=41.01 Aligned_cols=85 Identities=14% Similarity=0.068 Sum_probs=52.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQ 162 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~ 162 (397)
.|+.||=.|+ +|+.+.+++..+ ..+.+|+++|.++..++.+.+.+... .++.++..|.++...- ... ......
T Consensus 421 ~gk~vLVTGa-sggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~--~~v~~v~~Dvtd~~~v--~~~~~~~~~~ 495 (681)
T PRK08324 421 AGKVALVTGA-AGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP--DRALGVACDVTDEAAV--QAAFEEAALA 495 (681)
T ss_pred CCCEEEEecC-CCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc--CcEEEEEecCCCHHHH--HHHHHHHHHH
Confidence 4677886665 567777777654 34568999999998877766554432 3577888888754210 000 000011
Q ss_pred ccCccEEEEcCC
Q psy17793 163 KESFDRILLDAP 174 (397)
Q Consensus 163 ~~~fD~Il~DpP 174 (397)
.+.+|.|+..+-
T Consensus 496 ~g~iDvvI~~AG 507 (681)
T PRK08324 496 FGGVDIVVSNAG 507 (681)
T ss_pred cCCCCEEEECCC
Confidence 246899998654
No 341
>PRK07109 short chain dehydrogenase; Provisional
Probab=84.32 E-value=22 Score=35.18 Aligned_cols=86 Identities=14% Similarity=0.063 Sum_probs=55.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQ 162 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~ 162 (397)
.+..||=.| |+|+.+..++..+ ..+.+|+.++.++..++.+.+.++..|. ++.++..|..+...- ... ......
T Consensus 7 ~~k~vlITG-as~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~-~~~~v~~Dv~d~~~v--~~~~~~~~~~ 82 (334)
T PRK07109 7 GRQVVVITG-ASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGG-EALAVVADVADAEAV--QAAADRAEEE 82 (334)
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEecCCCHHHH--HHHHHHHHHH
Confidence 355666666 4567777777654 3456899999999999888888877764 577788888764210 000 000011
Q ss_pred ccCccEEEEcCC
Q psy17793 163 KESFDRILLDAP 174 (397)
Q Consensus 163 ~~~fD~Il~DpP 174 (397)
-+.+|.++.++-
T Consensus 83 ~g~iD~lInnAg 94 (334)
T PRK07109 83 LGPIDTWVNNAM 94 (334)
T ss_pred CCCCCEEEECCC
Confidence 247899998664
No 342
>PRK13534 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=84.30 E-value=0.6 Score=50.72 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=31.1
Q ss_pred CeEEEechhhhhhhhcccceecccccccCCCCCC
Q psy17793 345 PVQIIVDQPCALAVLRGADVFAPGVLAMPLGKNS 378 (397)
Q Consensus 345 ~~~v~vd~~c~~a~LrGa~v~~pg~~~~~~~~~~ 378 (397)
.+.|+||..++..+.+|++||+|||+++...|..
T Consensus 563 ~~~V~Vd~~a~~~v~~G~~v~apgVv~~d~~ir~ 596 (639)
T PRK13534 563 KYRVVVDKESEPFARKGKSVFAKFVIDCDEEIRP 596 (639)
T ss_pred CcEEEECCcchhhhhCCCcccCCcceecCCCCCC
Confidence 3799999999999999999999999999988754
No 343
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=84.16 E-value=29 Score=32.21 Aligned_cols=86 Identities=8% Similarity=0.067 Sum_probs=55.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhhc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKLQ 162 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~~ 162 (397)
+|.++|=.|+ +|+.+..++..+ ..+.+|+.++.+++.++.+.+.+++.+. ++.++..|..+...-. ..+.... .
T Consensus 10 ~~k~ilItGa-s~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~--~ 85 (256)
T PRK06124 10 AGQVALVTGS-ARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGG-AAEALAFDIADEEAVAAAFARIDA--E 85 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEccCCCHHHHHHHHHHHHH--h
Confidence 4678887775 566777777644 3457899999998888877777776663 4778888886542100 0000001 1
Q ss_pred ccCccEEEEcCC
Q psy17793 163 KESFDRILLDAP 174 (397)
Q Consensus 163 ~~~fD~Il~DpP 174 (397)
-+++|.|+..+-
T Consensus 86 ~~~id~vi~~ag 97 (256)
T PRK06124 86 HGRLDILVNNVG 97 (256)
T ss_pred cCCCCEEEECCC
Confidence 246899998663
No 344
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=84.10 E-value=2.4 Score=38.64 Aligned_cols=34 Identities=21% Similarity=0.277 Sum_probs=25.0
Q ss_pred ccccccCCcEEEEEecCCCccccHHHHHHHHHHCC
Q psy17793 222 GIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHP 256 (397)
Q Consensus 222 a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~ 256 (397)
..+.|+++ .+|..-+|+.+.-.++.+..+|++..
T Consensus 106 i~~~l~~~-~lvV~~STvppGtt~~~~~~ile~~~ 139 (185)
T PF03721_consen 106 IAPVLRPG-DLVVIESTVPPGTTEELLKPILEKRS 139 (185)
T ss_dssp HHHHHCSC-EEEEESSSSSTTHHHHHHHHHHHHHC
T ss_pred HHHHHhhc-ceEEEccEEEEeeehHhhhhhhhhhc
Confidence 55567775 44444567888888989999999865
No 345
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=84.10 E-value=27 Score=32.49 Aligned_cols=87 Identities=11% Similarity=0.096 Sum_probs=54.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQ 162 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~ 162 (397)
.+..+|=.| |+|+.+.+++..+. .+.+|+..+.++..++.+.+.++..+. .+..+..|..+...- .+. ......
T Consensus 8 ~~k~~lItG-as~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~~--~~~~~~~~~~ 83 (254)
T PRK08085 8 AGKNILITG-SAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGI-KAHAAPFNVTHKQEV--EAAIEHIEKD 83 (254)
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCC-eEEEEecCCCCHHHH--HHHHHHHHHh
Confidence 356777777 45677777776553 456899999998888877776666552 466777887654210 000 000011
Q ss_pred ccCccEEEEcCCC
Q psy17793 163 KESFDRILLDAPC 175 (397)
Q Consensus 163 ~~~fD~Il~DpPC 175 (397)
.+.+|.|+..+-.
T Consensus 84 ~~~id~vi~~ag~ 96 (254)
T PRK08085 84 IGPIDVLINNAGI 96 (254)
T ss_pred cCCCCEEEECCCc
Confidence 2468999987643
No 346
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=83.94 E-value=0.96 Score=45.36 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=25.7
Q ss_pred CeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHH
Q psy17793 87 QKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTK 125 (397)
Q Consensus 87 ~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~ 125 (397)
..|||+|+|||.-...+-.....-..++-+|.|+.--+.
T Consensus 115 qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV 153 (484)
T COG5459 115 QSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKV 153 (484)
T ss_pred chhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHH
Confidence 469999999997665554544444456667777654333
No 347
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=83.87 E-value=7.1 Score=38.45 Aligned_cols=51 Identities=18% Similarity=0.198 Sum_probs=32.7
Q ss_pred cCCCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy17793 81 LDVQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS 136 (397)
Q Consensus 81 L~~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~ 136 (397)
...++|++||=.|+|+ |..+.++|..+ +...|++++.++++.+.+ +.+|.+
T Consensus 156 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~-G~~~v~~~~~~~~~~~~~----~~~Ga~ 207 (347)
T PRK10309 156 AQGCEGKNVIIIGAGTIGLLAIQCAVAL-GAKSVTAIDINSEKLALA----KSLGAM 207 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHH----HHcCCc
Confidence 3456889998886533 22344555654 233588999999988765 345764
No 348
>PRK09242 tropinone reductase; Provisional
Probab=83.59 E-value=28 Score=32.44 Aligned_cols=86 Identities=10% Similarity=0.053 Sum_probs=53.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEEcccccccccchhhH-HHhhh
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQ-LSSIQTHVYDSTRINTSSQIDI-ERMKL 161 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g-~~~v~~~~~D~~~~~~~~~~d~-~~~~~ 161 (397)
.|..+|=.|++ |+.+..++..+. .+.+|+.++.+++.++.+.+.+.... -.++.++..|..+...- ... .....
T Consensus 8 ~~k~~lItGa~-~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~--~~~~~~~~~ 84 (257)
T PRK09242 8 DGQTALITGAS-KGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDR--RAILDWVED 84 (257)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHH--HHHHHHHHH
Confidence 36678877764 566776776543 45689999999988888777776551 13477788888654210 000 00001
Q ss_pred cccCccEEEEcC
Q psy17793 162 QKESFDRILLDA 173 (397)
Q Consensus 162 ~~~~fD~Il~Dp 173 (397)
.-+.+|.|+..+
T Consensus 85 ~~g~id~li~~a 96 (257)
T PRK09242 85 HWDGLHILVNNA 96 (257)
T ss_pred HcCCCCEEEECC
Confidence 125689998855
No 349
>PRK12829 short chain dehydrogenase; Provisional
Probab=83.38 E-value=22 Score=33.09 Aligned_cols=88 Identities=16% Similarity=0.102 Sum_probs=54.0
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHH
Q psy17793 81 LDVQPGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIER 158 (397)
Q Consensus 81 L~~~~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~ 158 (397)
+...++.++|=.|+. |+.+.+++..+ ..+..|++++.+++..+.+.+...+. ++.++..|..+...-. ..+...
T Consensus 6 ~~~~~~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~ 81 (264)
T PRK12829 6 LKPLDGLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGA---KVTATVADVADPAQVERVFDTAV 81 (264)
T ss_pred hhccCCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcC---ceEEEEccCCCHHHHHHHHHHHH
Confidence 334567889988875 77788877754 34568999999988777665444322 5677888887542100 000000
Q ss_pred hhhcccCccEEEEcCC
Q psy17793 159 MKLQKESFDRILLDAP 174 (397)
Q Consensus 159 ~~~~~~~fD~Il~DpP 174 (397)
. ..+.+|.|+..+.
T Consensus 82 ~--~~~~~d~vi~~ag 95 (264)
T PRK12829 82 E--RFGGLDVLVNNAG 95 (264)
T ss_pred H--HhCCCCEEEECCC
Confidence 0 1146899998654
No 350
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=83.21 E-value=9.8 Score=36.57 Aligned_cols=79 Identities=15% Similarity=0.170 Sum_probs=52.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793 84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK 163 (397)
Q Consensus 84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~ 163 (397)
.+|.. |+..+|+=-.+ +.++..+-++.++|..++-...+++|+. +-.++++...|........ .+ +.
T Consensus 88 N~~~~-l~~YpGSP~lA---~~llR~qDRl~l~ELHp~D~~~L~~~f~--~d~~vrv~~~DG~~~l~a~------LP-P~ 154 (279)
T COG2961 88 NPGGG-LRYYPGSPLLA---RQLLREQDRLVLTELHPSDAPLLRNNFA--GDRRVRVLRGDGFLALKAH------LP-PK 154 (279)
T ss_pred CCCCC-cccCCCCHHHH---HHHcchhceeeeeecCccHHHHHHHHhC--CCcceEEEecCcHHHHhhh------CC-CC
Confidence 34443 45444443333 3344467789999999999999999987 5578999999987553210 11 12
Q ss_pred cCccEEEEcCCC
Q psy17793 164 ESFDRILLDAPC 175 (397)
Q Consensus 164 ~~fD~Il~DpPC 175 (397)
++=-.||+|||+
T Consensus 155 erRglVLIDPPf 166 (279)
T COG2961 155 ERRGLVLIDPPF 166 (279)
T ss_pred CcceEEEeCCCc
Confidence 344799999993
No 351
>PRK06139 short chain dehydrogenase; Provisional
Probab=83.19 E-value=24 Score=34.99 Aligned_cols=86 Identities=12% Similarity=0.050 Sum_probs=55.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQ 162 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~ 162 (397)
.+..||=.|+ +|+.+..++..+ ..+.+|+.++.++.+++.+.+.++..|. ++.++..|..+...- ... ......
T Consensus 6 ~~k~vlITGA-s~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~-~~~~~~~Dv~d~~~v--~~~~~~~~~~ 81 (330)
T PRK06139 6 HGAVVVITGA-SSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGA-EVLVVPTDVTDADQV--KALATQAASF 81 (330)
T ss_pred CCCEEEEcCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHH--HHHHHHHHHh
Confidence 4566775555 577777777654 3456899999999999988888887764 466777887654210 000 000011
Q ss_pred ccCccEEEEcCC
Q psy17793 163 KESFDRILLDAP 174 (397)
Q Consensus 163 ~~~fD~Il~DpP 174 (397)
.+.+|.++.++-
T Consensus 82 ~g~iD~lVnnAG 93 (330)
T PRK06139 82 GGRIDVWVNNVG 93 (330)
T ss_pred cCCCCEEEECCC
Confidence 257899998664
No 352
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=83.08 E-value=8.4 Score=37.50 Aligned_cols=51 Identities=27% Similarity=0.322 Sum_probs=35.8
Q ss_pred cCCCCCCeEEEEcC--CCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793 81 LDVQPGQKVLDMCA--APGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS 137 (397)
Q Consensus 81 L~~~~g~~VLDlca--gpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~ 137 (397)
..+++|++||=.|+ +-|..+.++|... +.+|++++.++++.+.++ .+|++.
T Consensus 134 ~~~~~g~~VLI~ga~g~vG~~aiqlAk~~--G~~Vi~~~~s~~~~~~~~----~lGa~~ 186 (325)
T TIGR02825 134 CGVKGGETVMVNAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKVAYLK----KLGFDV 186 (325)
T ss_pred hCCCCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHH----HcCCCE
Confidence 45678999987774 3455666677764 357999999988876664 467754
No 353
>PRK07326 short chain dehydrogenase; Provisional
Probab=82.74 E-value=25 Score=32.07 Aligned_cols=60 Identities=8% Similarity=0.002 Sum_probs=43.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccc
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRI 148 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~ 148 (397)
+..||=.| |+|+.+.+++..+. .+.+|++++.++.+.+.+.+.+... ..+.++.+|..+.
T Consensus 6 ~~~ilItG-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~D~~~~ 66 (237)
T PRK07326 6 GKVALITG-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK--GNVLGLAADVRDE 66 (237)
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc--CcEEEEEccCCCH
Confidence 56788777 47888888887553 3458999999998877776655443 4577888887654
No 354
>PRK06125 short chain dehydrogenase; Provisional
Probab=82.71 E-value=35 Score=31.80 Aligned_cols=82 Identities=15% Similarity=0.167 Sum_probs=52.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhccc
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE 164 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~ 164 (397)
+..+|=.|+ +|+.+..++..+ ..+.+|++++.++...+.+.+.++...-.++.++..|..+... .......-+
T Consensus 7 ~k~vlItG~-~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~-----~~~~~~~~g 80 (259)
T PRK06125 7 GKRVLITGA-SKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEA-----REQLAAEAG 80 (259)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHH-----HHHHHHHhC
Confidence 567777775 566777777644 2345899999999888887777765533457778888865421 000001125
Q ss_pred CccEEEEcC
Q psy17793 165 SFDRILLDA 173 (397)
Q Consensus 165 ~fD~Il~Dp 173 (397)
..|.++.++
T Consensus 81 ~id~lv~~a 89 (259)
T PRK06125 81 DIDILVNNA 89 (259)
T ss_pred CCCEEEECC
Confidence 689998754
No 355
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=82.68 E-value=7.2 Score=38.99 Aligned_cols=51 Identities=20% Similarity=0.233 Sum_probs=33.7
Q ss_pred cCCCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy17793 81 LDVQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS 136 (397)
Q Consensus 81 L~~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~ 136 (397)
..+++|++||=.|+|+ |..+.++|... +..+|+++|.++.+++.++ ++|.+
T Consensus 187 ~~i~~g~~VlV~G~G~vG~~a~~lak~~-G~~~Vi~~~~~~~r~~~a~----~~Ga~ 238 (371)
T cd08281 187 AGVRPGQSVAVVGLGGVGLSALLGAVAA-GASQVVAVDLNEDKLALAR----ELGAT 238 (371)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEEcCCHHHHHHHH----HcCCc
Confidence 4567899998887543 23344455543 2236999999999987764 46764
No 356
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=82.63 E-value=36 Score=32.55 Aligned_cols=86 Identities=15% Similarity=0.042 Sum_probs=49.8
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhh
Q psy17793 85 PGQKVLDMCAAP-GNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKL 161 (397)
Q Consensus 85 ~g~~VLDlcagp-G~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~ 161 (397)
.|..+|=.|+++ +|.+..+|..+. .+.+|+..+.+....+.+++..+.++.. .++..|..+...-. ..+. ...
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~--~~~~~Dv~d~~~v~~~~~~--i~~ 79 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSD--YVYELDVSKPEHFKSLAES--LKK 79 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCc--eEEEecCCCHHHHHHHHHH--HHH
Confidence 367888888874 677877776543 4568888888854334444444444533 45677887652100 0000 001
Q ss_pred cccCccEEEEcCC
Q psy17793 162 QKESFDRILLDAP 174 (397)
Q Consensus 162 ~~~~fD~Il~DpP 174 (397)
.-+.+|.++.++-
T Consensus 80 ~~g~iDilVnnAG 92 (274)
T PRK08415 80 DLGKIDFIVHSVA 92 (274)
T ss_pred HcCCCCEEEECCc
Confidence 1257899998764
No 357
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.50 E-value=33 Score=31.45 Aligned_cols=85 Identities=14% Similarity=0.162 Sum_probs=54.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhcc
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQK 163 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~~ 163 (397)
+..+|=.|+ +|+.+.+++..+ ..+.+|+.++.++...+.+...++..+ .++.++..|..+...- .+. ....-..
T Consensus 7 ~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~--~~~~~~~~~~~ 82 (239)
T PRK07666 7 GKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYG-VKVVIATADVSDYEEV--TAAIEQLKNEL 82 (239)
T ss_pred CCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC-CeEEEEECCCCCHHHH--HHHHHHHHHHc
Confidence 457777774 688888887654 445689999999888777766665554 3577888888764210 000 0000011
Q ss_pred cCccEEEEcCC
Q psy17793 164 ESFDRILLDAP 174 (397)
Q Consensus 164 ~~fD~Il~DpP 174 (397)
+..|.|+..+.
T Consensus 83 ~~id~vi~~ag 93 (239)
T PRK07666 83 GSIDILINNAG 93 (239)
T ss_pred CCccEEEEcCc
Confidence 46899998664
No 358
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=82.21 E-value=9.7 Score=36.43 Aligned_cols=51 Identities=20% Similarity=0.133 Sum_probs=32.4
Q ss_pred cCCCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy17793 81 LDVQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS 136 (397)
Q Consensus 81 L~~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~ 136 (397)
+...+|++||=.|+|+ |..++++|..+ +...|+++|.++++++.++ ++|.+
T Consensus 116 ~~~~~g~~VlV~G~G~vG~~~~~~ak~~-G~~~Vi~~~~~~~r~~~a~----~~Ga~ 167 (280)
T TIGR03366 116 AGDLKGRRVLVVGAGMLGLTAAAAAAAA-GAARVVAADPSPDRRELAL----SFGAT 167 (280)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHH----HcCCc
Confidence 3456899999886532 22334445543 2335899999999887664 46764
No 359
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=82.16 E-value=3.6 Score=35.50 Aligned_cols=43 Identities=16% Similarity=0.167 Sum_probs=29.0
Q ss_pred EEcCCCC--hHHHHHH-HHcCCCcEEEEEeCCHHHHHHHHHH--HHHh
Q psy17793 91 DMCAAPG--NKLTHIA-LLMNDTGTLIALDKSKPRVTKLEET--IKKL 133 (397)
Q Consensus 91 DlcagpG--~kt~~lA-~~~~~~~~V~avD~s~~rl~~l~~n--~~~~ 133 (397)
|+||.-| ..+...+ +.....++|+++|.++..++.++++ +...
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~ 48 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALN 48 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhc
Confidence 8999999 6666554 2455678999999999999999999 5544
No 360
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=82.16 E-value=40 Score=31.77 Aligned_cols=86 Identities=19% Similarity=0.103 Sum_probs=46.0
Q ss_pred CCCeEEEEcCCCC-hHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhh
Q psy17793 85 PGQKVLDMCAAPG-NKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKL 161 (397)
Q Consensus 85 ~g~~VLDlcagpG-~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~ 161 (397)
.|..+|=.|++.| |.+..+|..+. .+.+|+..+.+....+.+++..+..|. ..++..|+.+...- ... .....
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g~--~~~~~~Dv~~~~~v--~~~~~~~~~ 82 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGC--NFVSELDVTNPKSI--SNLFDDIKE 82 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcCC--ceEEEccCCCHHHH--HHHHHHHHH
Confidence 3567888888765 66666765543 355788778764333334443333342 23456787664210 000 00001
Q ss_pred cccCccEEEEcCC
Q psy17793 162 QKESFDRILLDAP 174 (397)
Q Consensus 162 ~~~~fD~Il~DpP 174 (397)
.-+.+|+++.++-
T Consensus 83 ~~g~iDilVnnag 95 (260)
T PRK06603 83 KWGSFDFLLHGMA 95 (260)
T ss_pred HcCCccEEEEccc
Confidence 1257999887654
No 361
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.14 E-value=25 Score=32.14 Aligned_cols=85 Identities=13% Similarity=0.221 Sum_probs=52.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQ 162 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~ 162 (397)
.+++||=.|++ |+.+.+++..+ ..+.+|++++.++..++.+.+.+...+ ++.++..|..+...- ... ......
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~--~~~~~~~~~~ 78 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYG--NIHYVVGDVSSTESA--RNVIEKAAKV 78 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEECCCCCHHHH--HHHHHHHHHH
Confidence 36688888875 77788788655 345689999999988877655554432 577788888754210 000 000001
Q ss_pred ccCccEEEEcCC
Q psy17793 163 KESFDRILLDAP 174 (397)
Q Consensus 163 ~~~fD~Il~DpP 174 (397)
-+.+|.|+..+.
T Consensus 79 ~~~id~ii~~ag 90 (238)
T PRK05786 79 LNAIDGLVVTVG 90 (238)
T ss_pred hCCCCEEEEcCC
Confidence 145798887553
No 362
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=82.11 E-value=33 Score=31.50 Aligned_cols=86 Identities=10% Similarity=0.072 Sum_probs=54.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhcc
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQK 163 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~~ 163 (397)
+..+|=.|+ +|+.+.+++..+. .+.+|+.++.+....+.+...++..+ .++.++..|..+...- .+. .......
T Consensus 3 ~~~ilItGa-s~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~--~~~~~~~~~~~ 78 (250)
T TIGR03206 3 DKTAIVTGG-GGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKG-GNAQAFACDITDRDSV--DTAVAAAEQAL 78 (250)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHH--HHHHHHHHHHc
Confidence 567777775 5777877776543 44589999999988888777776654 3577888888754210 000 0000011
Q ss_pred cCccEEEEcCCC
Q psy17793 164 ESFDRILLDAPC 175 (397)
Q Consensus 164 ~~fD~Il~DpPC 175 (397)
+..|.|+..+..
T Consensus 79 ~~~d~vi~~ag~ 90 (250)
T TIGR03206 79 GPVDVLVNNAGW 90 (250)
T ss_pred CCCCEEEECCCC
Confidence 468999986643
No 363
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=82.06 E-value=15 Score=36.11 Aligned_cols=51 Identities=14% Similarity=0.106 Sum_probs=34.9
Q ss_pred cCCCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793 81 LDVQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS 137 (397)
Q Consensus 81 L~~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~ 137 (397)
..+++|++||=.|+|+ |..+.++|..+ +.+|++++.++++++.+ +++|.+.
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~--G~~vi~~~~~~~~~~~a----~~~Ga~~ 212 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQ--GATVHVMTRGAAARRLA----LALGAAS 212 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHH----HHhCCce
Confidence 4568899999888643 22344555554 35799999999987554 5578754
No 364
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=82.03 E-value=11 Score=38.99 Aligned_cols=34 Identities=18% Similarity=0.277 Sum_probs=28.3
Q ss_pred CCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHH
Q psy17793 94 AAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127 (397)
Q Consensus 94 agpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~ 127 (397)
-|.|..+.-+|..+..+-.|+++|+++.+++.++
T Consensus 12 IGlGyvGlpmA~~la~~~~V~g~D~~~~~ve~l~ 45 (425)
T PRK15182 12 IGLGYVGLPLAVEFGKSRQVVGFDVNKKRILELK 45 (425)
T ss_pred ECcCcchHHHHHHHhcCCEEEEEeCCHHHHHHHH
Confidence 3778888888877766678999999999999877
No 365
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=81.97 E-value=42 Score=31.94 Aligned_cols=86 Identities=14% Similarity=0.056 Sum_probs=49.4
Q ss_pred CCCeEEEEcCC-CChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhh
Q psy17793 85 PGQKVLDMCAA-PGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKL 161 (397)
Q Consensus 85 ~g~~VLDlcag-pG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~ 161 (397)
.|..+|=.|++ +++.+..+|..+. .+.+|+.++.+....+.+++..++++ .+..+..|..+...- ... .....
T Consensus 9 ~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~v--~~~~~~~~~ 84 (272)
T PRK08159 9 AGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELG--AFVAGHCDVTDEASI--DAVFETLEK 84 (272)
T ss_pred cCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcC--CceEEecCCCCHHHH--HHHHHHHHH
Confidence 35678888887 4788888887653 45577777665433344444444444 244577887654210 000 00011
Q ss_pred cccCccEEEEcCC
Q psy17793 162 QKESFDRILLDAP 174 (397)
Q Consensus 162 ~~~~fD~Il~DpP 174 (397)
.-+..|.++.++-
T Consensus 85 ~~g~iD~lv~nAG 97 (272)
T PRK08159 85 KWGKLDFVVHAIG 97 (272)
T ss_pred hcCCCcEEEECCc
Confidence 1257899998774
No 366
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=81.94 E-value=32 Score=31.87 Aligned_cols=86 Identities=15% Similarity=0.120 Sum_probs=54.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhcc
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQK 163 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~~ 163 (397)
+..+| +..|+|+.+.+++..+ ..+..|+.++.++...+.+.+.++..+. ++.++..|..+...- .+. .......
T Consensus 7 ~~~vl-ItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~--~~~~~~~~~~~ 82 (262)
T PRK13394 7 GKTAV-VTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGG-KAIGVAMDVTNEDAV--NAGIDKVAERF 82 (262)
T ss_pred CCEEE-EECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCc-eEEEEECCCCCHHHH--HHHHHHHHHHc
Confidence 56777 4455677888777654 3456899999999888888777776653 477788888764210 000 0000112
Q ss_pred cCccEEEEcCCC
Q psy17793 164 ESFDRILLDAPC 175 (397)
Q Consensus 164 ~~fD~Il~DpPC 175 (397)
+..|.|+..+-+
T Consensus 83 ~~~d~vi~~ag~ 94 (262)
T PRK13394 83 GSVDILVSNAGI 94 (262)
T ss_pred CCCCEEEECCcc
Confidence 468999986644
No 367
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=81.93 E-value=23 Score=33.25 Aligned_cols=84 Identities=14% Similarity=0.067 Sum_probs=49.1
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhh
Q psy17793 85 PGQKVLDMCAAP-GNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKL 161 (397)
Q Consensus 85 ~g~~VLDlcagp-G~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~ 161 (397)
.|+.+|=.|++. ++.+..+|..+ ..+.+|+.++.+....+ .+++..-.++.++..|.++...-. ..+.-..
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~----~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~-- 79 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKK----SLQKLVDEEDLLVECDVASDESIERAFATIKE-- 79 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHH----HHHhhccCceeEEeCCCCCHHHHHHHHHHHHH--
Confidence 467899889885 67787777755 35568888887743222 223322235677888887542100 0000001
Q ss_pred cccCccEEEEcCC
Q psy17793 162 QKESFDRILLDAP 174 (397)
Q Consensus 162 ~~~~fD~Il~DpP 174 (397)
.-+++|.++.++-
T Consensus 80 ~~g~iD~lv~nAg 92 (252)
T PRK06079 80 RVGKIDGIVHAIA 92 (252)
T ss_pred HhCCCCEEEEccc
Confidence 1257999998763
No 368
>PRK12937 short chain dehydrogenase; Provisional
Probab=81.92 E-value=35 Score=31.22 Aligned_cols=85 Identities=12% Similarity=0.006 Sum_probs=48.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeC-CHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhc
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDK-SKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQ 162 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~-s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~ 162 (397)
+..||=.|+ +|+.+.++|..+. .+.+|+.+.. ++...+.+.+.++..+ .++.++..|..+...- .+. ......
T Consensus 5 ~~~vlItG~-~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~--~~~~~~~~~~ 80 (245)
T PRK12937 5 NKVAIVTGA-SRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAG-GRAIAVQADVADAAAV--TRLFDAAETA 80 (245)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcC-CeEEEEECCCCCHHHH--HHHHHHHHHH
Confidence 456666665 5788888887653 3446666554 3455555666666555 3578888888764210 000 000001
Q ss_pred ccCccEEEEcCC
Q psy17793 163 KESFDRILLDAP 174 (397)
Q Consensus 163 ~~~fD~Il~DpP 174 (397)
.+..|.|+..+.
T Consensus 81 ~~~id~vi~~ag 92 (245)
T PRK12937 81 FGRIDVLVNNAG 92 (245)
T ss_pred cCCCCEEEECCC
Confidence 246899998653
No 369
>PRK06181 short chain dehydrogenase; Provisional
Probab=81.81 E-value=41 Score=31.36 Aligned_cols=60 Identities=12% Similarity=0.114 Sum_probs=42.2
Q ss_pred CeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccc
Q psy17793 87 QKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRI 148 (397)
Q Consensus 87 ~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~ 148 (397)
..||=.| |+|+.+.+++..+ ..+.+|++++.++...+.+.+.++..+ .++.++..|..+.
T Consensus 2 ~~vlVtG-asg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~ 62 (263)
T PRK06181 2 KVVIITG-ASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHG-GEALVVPTDVSDA 62 (263)
T ss_pred CEEEEec-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCH
Confidence 3566444 6677888777643 345689999999888777766666655 3577888888764
No 370
>PRK07062 short chain dehydrogenase; Provisional
Probab=81.63 E-value=39 Score=31.59 Aligned_cols=87 Identities=8% Similarity=0.059 Sum_probs=53.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEEcccccccccchhhH-HHhhh
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQ-LSSIQTHVYDSTRINTSSQIDI-ERMKL 161 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g-~~~v~~~~~D~~~~~~~~~~d~-~~~~~ 161 (397)
.|..+|=.|++ |+.+.+++..+ ..+.+|+.++.++.+++.+.+.+.... -.++.++..|..+...- ... .....
T Consensus 7 ~~k~~lItGas-~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v--~~~~~~~~~ 83 (265)
T PRK07062 7 EGRVAVVTGGS-SGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADV--AAFAAAVEA 83 (265)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHH--HHHHHHHHH
Confidence 36678877755 56666677654 346689999999988887776665542 23577788888765210 000 00001
Q ss_pred cccCccEEEEcCC
Q psy17793 162 QKESFDRILLDAP 174 (397)
Q Consensus 162 ~~~~fD~Il~DpP 174 (397)
.-+.+|.++.++-
T Consensus 84 ~~g~id~li~~Ag 96 (265)
T PRK07062 84 RFGGVDMLVNNAG 96 (265)
T ss_pred hcCCCCEEEECCC
Confidence 1256899998664
No 371
>KOG3350|consensus
Probab=81.58 E-value=11 Score=34.40 Aligned_cols=92 Identities=15% Similarity=0.126 Sum_probs=53.4
Q ss_pred cCCCcEEEechhHHHHHhccCC-CCCCeEEEEcCCCChHHHHHHHHcC----CCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy17793 62 LDSSMGILQNLPSILAGHYLDV-QPGQKVLDMCAAPGNKLTHIALLMN----DTGTLIALDKSKPRVTKLEETIKKLQLS 136 (397)
Q Consensus 62 ~~~g~~~~Qd~~S~l~~~~L~~-~~g~~VLDlcagpG~kt~~lA~~~~----~~~~V~avD~s~~rl~~l~~n~~~~g~~ 136 (397)
..+..+|.++-+..++...+.. ..|.+| -+=++|-.. +-.... +.-+|+-+|.++ +.+.+|
T Consensus 49 Qlsqfwy~~eta~~La~e~v~~s~e~~rI-acvS~Psly---~y~k~re~~~~~~~v~lfEfDk--------RFe~yg-- 114 (217)
T KOG3350|consen 49 QLSQFWYSDETARKLAAERVEASGEGSRI-ACVSCPSLY---VYQKKREIEIPHDQVYLFEFDK--------RFELYG-- 114 (217)
T ss_pred hhhhhhcCHHHHHHHHHHHHhhcccCceE-EEEeCchHH---hhhhhhhccCCceeEEEEEehh--------hHHhcc--
Confidence 4566778899888888887764 345444 444445432 111111 245677777764 345556
Q ss_pred cEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCC
Q psy17793 137 SIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPC 175 (397)
Q Consensus 137 ~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPC 175 (397)
-+++..|....... +....+.||+|+.|||.
T Consensus 115 -~eFvfYDyN~p~dl-------p~~lk~~fdiivaDPPf 145 (217)
T KOG3350|consen 115 -TEFVFYDYNCPLDL-------PDELKAHFDIIVADPPF 145 (217)
T ss_pred -ceeEEeccCCCCCC-------HHHHHhcccEEEeCCcc
Confidence 25566666443211 11234569999999994
No 372
>PRK08862 short chain dehydrogenase; Provisional
Probab=81.26 E-value=41 Score=31.20 Aligned_cols=86 Identities=13% Similarity=0.054 Sum_probs=51.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhhc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKLQ 162 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~~ 162 (397)
.|..+|=.|++.| .+..+|..+ ..+..|+.++.++..++.+.+.++..+. .+..+..|..+...-. ..+.-...+
T Consensus 4 ~~k~~lVtGas~G-IG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~- 80 (227)
T PRK08862 4 KSSIILITSAGSV-LGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTD-NVYSFQLKDFSQESIRHLFDAIEQQF- 80 (227)
T ss_pred CCeEEEEECCccH-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCC-CeEEEEccCCCHHHHHHHHHHHHHHh-
Confidence 3567777776664 555555543 3567899999999999888777777664 3556667765432000 000000111
Q ss_pred ccCccEEEEcC
Q psy17793 163 KESFDRILLDA 173 (397)
Q Consensus 163 ~~~fD~Il~Dp 173 (397)
...+|.++.++
T Consensus 81 g~~iD~li~na 91 (227)
T PRK08862 81 NRAPDVLVNNW 91 (227)
T ss_pred CCCCCEEEECC
Confidence 12799999876
No 373
>PRK08643 acetoin reductase; Validated
Probab=80.97 E-value=45 Score=30.91 Aligned_cols=84 Identities=11% Similarity=-0.005 Sum_probs=52.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhcc
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQK 163 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~~ 163 (397)
+..+|=.| |+|+.+.+++..+. .+.+|+.++.++...+.+...+...+ .++.++..|..+...- ... .......
T Consensus 2 ~k~~lItG-as~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~--~~~~~~~~~~~ 77 (256)
T PRK08643 2 SKVALVTG-AGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDG-GKAIAVKADVSDRDQV--FAAVRQVVDTF 77 (256)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEECCCCCHHHH--HHHHHHHHHHc
Confidence 34555444 66778888887553 45689999999988888877776655 3577788888764210 000 0000112
Q ss_pred cCccEEEEcC
Q psy17793 164 ESFDRILLDA 173 (397)
Q Consensus 164 ~~fD~Il~Dp 173 (397)
+..|.++.++
T Consensus 78 ~~id~vi~~a 87 (256)
T PRK08643 78 GDLNVVVNNA 87 (256)
T ss_pred CCCCEEEECC
Confidence 4689999855
No 374
>KOG2651|consensus
Probab=80.87 E-value=4.9 Score=40.88 Aligned_cols=52 Identities=21% Similarity=0.211 Sum_probs=37.7
Q ss_pred HHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHH
Q psy17793 74 SILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127 (397)
Q Consensus 74 S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~ 127 (397)
|-++..+.+-.+-+.|+|+|||.|..+..++- +.+-.|.|+|-|....+.++
T Consensus 142 selvSsi~~f~gi~~vvD~GaG~G~LSr~lSl--~y~lsV~aIegsq~~~~ra~ 193 (476)
T KOG2651|consen 142 SELVSSISDFTGIDQVVDVGAGQGHLSRFLSL--GYGLSVKAIEGSQRLVERAQ 193 (476)
T ss_pred HHHHHHHHhhcCCCeeEEcCCCchHHHHHHhh--ccCceEEEeccchHHHHHHH
Confidence 33444454555667899999999999987766 46788999999965544443
No 375
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=80.78 E-value=42 Score=30.50 Aligned_cols=85 Identities=16% Similarity=0.162 Sum_probs=52.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhcc
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQK 163 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~~ 163 (397)
+.+||=.|+ +|+.+.+++..+ ..+.+|++++.++...+.+...++..+. ++.++..|..+...- .+. ....-.-
T Consensus 5 ~~~ilItGa-sg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~--~~~~~~~~~~~ 80 (246)
T PRK05653 5 GKTALVTGA-SRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGG-EARVLVFDVSDEAAV--RALIEAAVEAF 80 (246)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCC-ceEEEEccCCCHHHH--HHHHHHHHHHh
Confidence 457886665 788888888754 3345799999999888777666665553 467777888654210 000 0000011
Q ss_pred cCccEEEEcCC
Q psy17793 164 ESFDRILLDAP 174 (397)
Q Consensus 164 ~~fD~Il~DpP 174 (397)
+.+|.|+..+-
T Consensus 81 ~~id~vi~~ag 91 (246)
T PRK05653 81 GALDILVNNAG 91 (246)
T ss_pred CCCCEEEECCC
Confidence 46799997543
No 376
>PRK08589 short chain dehydrogenase; Validated
Probab=80.76 E-value=38 Score=32.07 Aligned_cols=85 Identities=15% Similarity=0.085 Sum_probs=51.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhh-HHHhhhc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQID-IERMKLQ 162 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d-~~~~~~~ 162 (397)
.+.++|=.|++ |+.+..++..+ ..+.+|+.++.+ ..++.+.+.++..+. ++.++..|..+...- .. .......
T Consensus 5 ~~k~vlItGas-~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~--~~~~~~~~~~ 79 (272)
T PRK08589 5 ENKVAVITGAS-TGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGG-KAKAYHVDISDEQQV--KDFASEIKEQ 79 (272)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcCC-eEEEEEeecCCHHHH--HHHHHHHHHH
Confidence 35667766654 56677777644 356789999998 666666666665542 477788888654210 00 0000011
Q ss_pred ccCccEEEEcCC
Q psy17793 163 KESFDRILLDAP 174 (397)
Q Consensus 163 ~~~fD~Il~DpP 174 (397)
-+..|.++.++-
T Consensus 80 ~g~id~li~~Ag 91 (272)
T PRK08589 80 FGRVDVLFNNAG 91 (272)
T ss_pred cCCcCEEEECCC
Confidence 246899999774
No 377
>PRK06949 short chain dehydrogenase; Provisional
Probab=80.46 E-value=35 Score=31.61 Aligned_cols=87 Identities=11% Similarity=0.140 Sum_probs=55.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK 163 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~ 163 (397)
.+.+||=.| |+|+.+.+++..+. .+.+|++++.++++++.+...+...+. ++.++..|..+...- ..-........
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~-~~~~~~~~~~~ 84 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGG-AAHVVSLDVTDYQSI-KAAVAHAETEA 84 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHH-HHHHHHHHHhc
Confidence 367788777 66778888887654 345799999999998888777665543 477888888654210 00000001112
Q ss_pred cCccEEEEcCC
Q psy17793 164 ESFDRILLDAP 174 (397)
Q Consensus 164 ~~fD~Il~DpP 174 (397)
+.+|.|+..+.
T Consensus 85 ~~~d~li~~ag 95 (258)
T PRK06949 85 GTIDILVNNSG 95 (258)
T ss_pred CCCCEEEECCC
Confidence 46899998654
No 378
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=80.36 E-value=23 Score=35.41 Aligned_cols=52 Identities=19% Similarity=0.233 Sum_probs=35.0
Q ss_pred cCCCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793 81 LDVQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS 137 (397)
Q Consensus 81 L~~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~ 137 (397)
..+++|++||=.|+|+ |..++++|..+ +..+|+++|.++++++.++ ++|.+.
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak~~-G~~~Vi~~~~~~~~~~~a~----~~Ga~~ 233 (368)
T TIGR02818 181 AKVEEGDTVAVFGLGGIGLSVIQGARMA-KASRIIAIDINPAKFELAK----KLGATD 233 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHH----HhCCCe
Confidence 3567899999887643 33345556554 2237999999999987774 467643
No 379
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=80.32 E-value=36 Score=31.40 Aligned_cols=86 Identities=16% Similarity=0.121 Sum_probs=54.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhccc
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE 164 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~ 164 (397)
+.+||=.| |+|+.+.+++..+. .+.+|++++.++...+.+...++..+ .++.++.+|..+...-.. -........+
T Consensus 4 ~~~vlItG-~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~-~~~~~~~~~~ 80 (258)
T PRK12429 4 GKVALVTG-AASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAG-GKAIGVAMDVTDEEAINA-GIDYAVETFG 80 (258)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHH-HHHHHHHHcC
Confidence 45666444 57888998888553 45589999999998888777776655 357788888875421000 0000001124
Q ss_pred CccEEEEcCC
Q psy17793 165 SFDRILLDAP 174 (397)
Q Consensus 165 ~fD~Il~DpP 174 (397)
.+|.|+..+.
T Consensus 81 ~~d~vi~~a~ 90 (258)
T PRK12429 81 GVDILVNNAG 90 (258)
T ss_pred CCCEEEECCC
Confidence 6899998553
No 380
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=80.15 E-value=8.3 Score=37.56 Aligned_cols=43 Identities=9% Similarity=-0.022 Sum_probs=27.6
Q ss_pred CCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHH
Q psy17793 84 QPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127 (397)
Q Consensus 84 ~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~ 127 (397)
.++++||=+|+|+ |..++++|..+ +...|+++|.++.+++.+.
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~-G~~~v~~~~~~~~rl~~a~ 186 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAA-GGSPPAVWETNPRRRDGAT 186 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHhhh
Confidence 3577888776543 34445566654 3345778899988876654
No 381
>PRK08251 short chain dehydrogenase; Provisional
Probab=80.04 E-value=49 Score=30.43 Aligned_cols=86 Identities=14% Similarity=0.159 Sum_probs=53.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEEcccccccccchhhH-HHhhhc
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQ-LSSIQTHVYDSTRINTSSQIDI-ERMKLQ 162 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g-~~~v~~~~~D~~~~~~~~~~d~-~~~~~~ 162 (397)
+.++|=.| |+|+.+.+++..+. .+.+|+..+.++.+++.+...+.... -.++.++..|..+...- .+. ......
T Consensus 2 ~k~vlItG-as~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~--~~~~~~~~~~ 78 (248)
T PRK08251 2 RQKILITG-ASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQV--FEVFAEFRDE 78 (248)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHH--HHHHHHHHHH
Confidence 34677666 56788888887553 34589999999999888776665432 23578888888764210 000 000011
Q ss_pred ccCccEEEEcCC
Q psy17793 163 KESFDRILLDAP 174 (397)
Q Consensus 163 ~~~fD~Il~DpP 174 (397)
-+..|.|+.++-
T Consensus 79 ~~~id~vi~~ag 90 (248)
T PRK08251 79 LGGLDRVIVNAG 90 (248)
T ss_pred cCCCCEEEECCC
Confidence 246899998664
No 382
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=79.99 E-value=31 Score=32.42 Aligned_cols=83 Identities=11% Similarity=0.192 Sum_probs=48.4
Q ss_pred CCCeEEEEcCC-CChHHHHHHHHcC-CCcEEEEEeCCH--HHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHh
Q psy17793 85 PGQKVLDMCAA-PGNKLTHIALLMN-DTGTLIALDKSK--PRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERM 159 (397)
Q Consensus 85 ~g~~VLDlcag-pG~kt~~lA~~~~-~~~~V~avD~s~--~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~ 159 (397)
.+..+|=.|++ +++.+..+|..+. .+.+|+..+.++ +.++.+.+ ..+- ++.++..|..+...- ... ...
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~---~~~~-~~~~~~~Dv~~~~~i--~~~~~~~ 79 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAK---RLPE-PAPVLELDVTNEEHL--ASLADRV 79 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHH---hcCC-CCcEEeCCCCCHHHH--HHHHHHH
Confidence 36789999985 6888888887553 456888888763 33333332 2332 456777888754210 000 000
Q ss_pred hhcccCccEEEEcC
Q psy17793 160 KLQKESFDRILLDA 173 (397)
Q Consensus 160 ~~~~~~fD~Il~Dp 173 (397)
....+.+|.++.++
T Consensus 80 ~~~~g~iD~li~nA 93 (256)
T PRK07889 80 REHVDGLDGVVHSI 93 (256)
T ss_pred HHHcCCCcEEEEcc
Confidence 11125799999866
No 383
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=79.92 E-value=9.2 Score=36.96 Aligned_cols=52 Identities=25% Similarity=0.270 Sum_probs=35.8
Q ss_pred ccCCCCCCeEEEEcC--CCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793 80 YLDVQPGQKVLDMCA--APGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS 137 (397)
Q Consensus 80 ~L~~~~g~~VLDlca--gpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~ 137 (397)
...+++|++||=.|+ +-|..++++|..+ +.+|++++.++++.+.+++ +|++.
T Consensus 138 ~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~--G~~vi~~~~s~~~~~~l~~----~Ga~~ 191 (329)
T cd08294 138 ICKPKAGETVVVNGAAGAVGSLVGQIAKIK--GCKVIGCAGSDDKVAWLKE----LGFDA 191 (329)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCE
Confidence 345778999987664 3455566677765 3579999999988777643 67654
No 384
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=79.86 E-value=39 Score=31.63 Aligned_cols=90 Identities=10% Similarity=0.047 Sum_probs=52.0
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHHcC-CCcEEEEEeCC-----------HHHHHHHHHHHHHhCCCcEEEEEccccccccc
Q psy17793 85 PGQKVLDMCAAP-GNKLTHIALLMN-DTGTLIALDKS-----------KPRVTKLEETIKKLQLSSIQTHVYDSTRINTS 151 (397)
Q Consensus 85 ~g~~VLDlcagp-G~kt~~lA~~~~-~~~~V~avD~s-----------~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~ 151 (397)
+|.+||=.|+.. ++.+.++|..+. .+.+|+..+.+ ......+.+.+++.|. ++.++..|..+...-
T Consensus 5 ~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~D~~~~~~i 83 (256)
T PRK12859 5 KNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGV-KVSSMELDLTQNDAP 83 (256)
T ss_pred CCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHH
Confidence 477888888874 677777776543 34577766422 2333445566666664 577788887654210
Q ss_pred chhhH-HHhhhcccCccEEEEcCCCCC
Q psy17793 152 SQIDI-ERMKLQKESFDRILLDAPCSG 177 (397)
Q Consensus 152 ~~~d~-~~~~~~~~~fD~Il~DpPCSg 177 (397)
... ......-+..|.|+.++-+..
T Consensus 84 --~~~~~~~~~~~g~id~li~~ag~~~ 108 (256)
T PRK12859 84 --KELLNKVTEQLGYPHILVNNAAYST 108 (256)
T ss_pred --HHHHHHHHHHcCCCcEEEECCCCCC
Confidence 000 000111246899999886543
No 385
>PRK07063 short chain dehydrogenase; Provisional
Probab=79.67 E-value=40 Score=31.43 Aligned_cols=86 Identities=14% Similarity=0.064 Sum_probs=53.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEEcccccccccchhhH-HHhhh
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQL-SSIQTHVYDSTRINTSSQIDI-ERMKL 161 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~-~~v~~~~~D~~~~~~~~~~d~-~~~~~ 161 (397)
.+.++|=.|++ |+.+.+++..+ ..+.+|+.++.++..++.+.+.++..+. .++.++..|..+...- ... .....
T Consensus 6 ~~k~vlVtGas-~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~--~~~~~~~~~ 82 (260)
T PRK07063 6 AGKVALVTGAA-QGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASV--AAAVAAAEE 82 (260)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHH--HHHHHHHHH
Confidence 36678877765 66777777654 3456899999999988888777765321 3477888888754210 000 00000
Q ss_pred cccCccEEEEcC
Q psy17793 162 QKESFDRILLDA 173 (397)
Q Consensus 162 ~~~~fD~Il~Dp 173 (397)
.-+.+|.++.++
T Consensus 83 ~~g~id~li~~a 94 (260)
T PRK07063 83 AFGPLDVLVNNA 94 (260)
T ss_pred HhCCCcEEEECC
Confidence 124789999865
No 386
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=79.50 E-value=46 Score=30.98 Aligned_cols=87 Identities=10% Similarity=0.050 Sum_probs=56.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQ 162 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~ 162 (397)
.+.++|=.| |+|+.+.+++..+. .+.+|+.++.++..++.+...+...+. ++.++.+|..+...- .+. ......
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~Dl~d~~~i--~~~~~~~~~~ 86 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGI-DALWIAADVADEADI--ERLAEETLER 86 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEccCCCHHHH--HHHHHHHHHH
Confidence 466788777 56788888887653 345899999999888877777766543 467788888764210 000 000001
Q ss_pred ccCccEEEEcCCC
Q psy17793 163 KESFDRILLDAPC 175 (397)
Q Consensus 163 ~~~fD~Il~DpPC 175 (397)
.+.+|.|+..+..
T Consensus 87 ~~~id~vi~~ag~ 99 (259)
T PRK08213 87 FGHVDILVNNAGA 99 (259)
T ss_pred hCCCCEEEECCCC
Confidence 2468999986654
No 387
>PRK07806 short chain dehydrogenase; Provisional
Probab=79.30 E-value=49 Score=30.47 Aligned_cols=85 Identities=15% Similarity=0.187 Sum_probs=49.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCH-HHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhc
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSK-PRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQ 162 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~-~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~ 162 (397)
+.++|-.|+ +|+.+.+++..+. .+..|++++.+. ...+.+...++..+ .++.++..|.++...- ... ......
T Consensus 6 ~k~vlItGa-sggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~--~~~~~~~~~~ 81 (248)
T PRK07806 6 GKTALVTGS-SRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAG-GRASAVGADLTDEESV--AALMDTAREE 81 (248)
T ss_pred CcEEEEECC-CCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcC-CceEEEEcCCCCHHHH--HHHHHHHHHh
Confidence 567887775 5677887876543 345788887754 44555555555444 3477888898764210 000 000001
Q ss_pred ccCccEEEEcCC
Q psy17793 163 KESFDRILLDAP 174 (397)
Q Consensus 163 ~~~fD~Il~DpP 174 (397)
.+.+|.|+.++.
T Consensus 82 ~~~~d~vi~~ag 93 (248)
T PRK07806 82 FGGLDALVLNAS 93 (248)
T ss_pred CCCCcEEEECCC
Confidence 146899988763
No 388
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=79.20 E-value=1.2 Score=37.24 Aligned_cols=20 Identities=30% Similarity=0.516 Sum_probs=17.7
Q ss_pred HHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYC 235 (397)
Q Consensus 205 ~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys 235 (397)
+.++++ +.++|+|||.++.-
T Consensus 24 ~~~f~~-----------~~~~L~pGG~lilE 43 (110)
T PF06859_consen 24 KRFFRR-----------IYSLLRPGGILILE 43 (110)
T ss_dssp HHHHHH-----------HHHHEEEEEEEEEE
T ss_pred HHHHHH-----------HHHhhCCCCEEEEe
Confidence 677888 99999999999986
No 389
>PRK05876 short chain dehydrogenase; Provisional
Probab=79.03 E-value=43 Score=31.93 Aligned_cols=86 Identities=10% Similarity=0.104 Sum_probs=53.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQ 162 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~ 162 (397)
.|..+|=.|++ |+.+.++|..+ ..+.+|+.+|.++..++.+.+.++..+. ++.++..|..+...- .+. ......
T Consensus 5 ~~k~vlVTGas-~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~-~~~~~~~Dv~d~~~v--~~~~~~~~~~ 80 (275)
T PRK05876 5 PGRGAVITGGA-SGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGF-DVHGVMCDVRHREEV--THLADEAFRL 80 (275)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEeCCCCCHHHH--HHHHHHHHHH
Confidence 36678866664 66777777654 3456899999998888877766665553 467788888764210 000 000011
Q ss_pred ccCccEEEEcCC
Q psy17793 163 KESFDRILLDAP 174 (397)
Q Consensus 163 ~~~fD~Il~DpP 174 (397)
-+..|.++.++-
T Consensus 81 ~g~id~li~nAg 92 (275)
T PRK05876 81 LGHVDVVFSNAG 92 (275)
T ss_pred cCCCCEEEECCC
Confidence 246899998764
No 390
>PRK08267 short chain dehydrogenase; Provisional
Probab=78.85 E-value=36 Score=31.70 Aligned_cols=81 Identities=15% Similarity=0.054 Sum_probs=49.3
Q ss_pred eEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH--HHhhhccc
Q psy17793 88 KVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI--ERMKLQKE 164 (397)
Q Consensus 88 ~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~--~~~~~~~~ 164 (397)
++|=.| |+|+.+..++..+. .+.+|++++.++..++.+.+.+. -.++.++..|+.+...- ... .......+
T Consensus 3 ~vlItG-asg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~v--~~~~~~~~~~~~~ 76 (260)
T PRK08267 3 SIFITG-AASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG---AGNAWTGALDVTDRAAW--DAALADFAAATGG 76 (260)
T ss_pred EEEEeC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc---CCceEEEEecCCCHHHH--HHHHHHHHHHcCC
Confidence 455555 45777777776543 45689999999888777655443 23578888998764210 000 00000135
Q ss_pred CccEEEEcCC
Q psy17793 165 SFDRILLDAP 174 (397)
Q Consensus 165 ~fD~Il~DpP 174 (397)
++|.|+..+-
T Consensus 77 ~id~vi~~ag 86 (260)
T PRK08267 77 RLDVLFNNAG 86 (260)
T ss_pred CCCEEEECCC
Confidence 7899998654
No 391
>PRK06500 short chain dehydrogenase; Provisional
Probab=78.68 E-value=47 Score=30.44 Aligned_cols=82 Identities=10% Similarity=0.071 Sum_probs=46.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhcc
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQK 163 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~~ 163 (397)
+..||=.|+ +|+.+.+++..+. .+.+|++++.++..++.+.+ +.+. ++.++..|..+.... .+. .......
T Consensus 6 ~k~vlItGa-sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~---~~~~-~~~~~~~D~~~~~~~--~~~~~~~~~~~ 78 (249)
T PRK06500 6 GKTALITGG-TSGIGLETARQFLAEGARVAITGRDPASLEAARA---ELGE-SALVIRADAGDVAAQ--KALAQALAEAF 78 (249)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHH---HhCC-ceEEEEecCCCHHHH--HHHHHHHHHHh
Confidence 456665554 5777877776543 45589999998766554443 3342 466777787654210 000 0000112
Q ss_pred cCccEEEEcCC
Q psy17793 164 ESFDRILLDAP 174 (397)
Q Consensus 164 ~~fD~Il~DpP 174 (397)
+.+|.|+.++.
T Consensus 79 ~~id~vi~~ag 89 (249)
T PRK06500 79 GRLDAVFINAG 89 (249)
T ss_pred CCCCEEEECCC
Confidence 46899998664
No 392
>PRK07904 short chain dehydrogenase; Provisional
Probab=78.60 E-value=15 Score=34.61 Aligned_cols=87 Identities=9% Similarity=0.051 Sum_probs=55.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHc-CC-CcEEEEEeCCHHH-HHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhh
Q psy17793 84 QPGQKVLDMCAAPGNKLTHIALLM-ND-TGTLIALDKSKPR-VTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMK 160 (397)
Q Consensus 84 ~~g~~VLDlcagpG~kt~~lA~~~-~~-~~~V~avD~s~~r-l~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~ 160 (397)
..+.+||=.|| +|+.+.++|..+ .. +.+|++++.++.. ++.+.+.++..+..++.++..|..+...- .+.-..-
T Consensus 6 ~~~~~vlItGa-s~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~--~~~~~~~ 82 (253)
T PRK07904 6 GNPQTILLLGG-TSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSH--PKVIDAA 82 (253)
T ss_pred CCCcEEEEEcC-CcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHH--HHHHHHH
Confidence 34567777776 677888888754 33 3589999998875 77777777776655788889998764210 0000000
Q ss_pred hcccCccEEEEcC
Q psy17793 161 LQKESFDRILLDA 173 (397)
Q Consensus 161 ~~~~~fD~Il~Dp 173 (397)
...+..|.++.++
T Consensus 83 ~~~g~id~li~~a 95 (253)
T PRK07904 83 FAGGDVDVAIVAF 95 (253)
T ss_pred HhcCCCCEEEEee
Confidence 1125799888743
No 393
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=78.39 E-value=12 Score=34.63 Aligned_cols=74 Identities=14% Similarity=0.136 Sum_probs=44.4
Q ss_pred CChHHHHHHHHc-CCCcEEEEEeCCHHHHHHH-HHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhcc-cCccEEEE
Q psy17793 96 PGNKLTHIALLM-NDTGTLIALDKSKPRVTKL-EETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQK-ESFDRILL 171 (397)
Q Consensus 96 pG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l-~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~~-~~fD~Il~ 171 (397)
+++.+..+|..+ ..+.+|+.++.+.+.++.. .+..++.+. +++..|..+...- ... ....... +.+|.++.
T Consensus 5 s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~---~~~~~D~~~~~~v--~~~~~~~~~~~~g~iD~lV~ 79 (241)
T PF13561_consen 5 SSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGA---EVIQCDLSDEESV--EALFDEAVERFGGRIDILVN 79 (241)
T ss_dssp TSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTS---EEEESCTTSHHHH--HHHHHHHHHHHCSSESEEEE
T ss_pred CCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCC---ceEeecCcchHHH--HHHHHHHHhhcCCCeEEEEe
Confidence 567777777754 3568999999999986444 444445553 3588888654200 000 0001112 68999987
Q ss_pred cCC
Q psy17793 172 DAP 174 (397)
Q Consensus 172 DpP 174 (397)
++.
T Consensus 80 ~a~ 82 (241)
T PF13561_consen 80 NAG 82 (241)
T ss_dssp EEE
T ss_pred ccc
Confidence 654
No 394
>PRK07890 short chain dehydrogenase; Provisional
Probab=78.38 E-value=56 Score=30.17 Aligned_cols=85 Identities=12% Similarity=0.132 Sum_probs=54.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhhc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKLQ 162 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~~ 162 (397)
.+.+||=.|+ +|+.+.++|..+ ..+.+|+.++.++...+.+.+.+...+ .++..+..|..+...-. ..+.....+
T Consensus 4 ~~k~vlItGa-~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~- 80 (258)
T PRK07890 4 KGKVVVVSGV-GPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLG-RRALAVPTDITDEDQCANLVALALERF- 80 (258)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhC-CceEEEecCCCCHHHHHHHHHHHHHHc-
Confidence 3567776665 677788777754 345689999999988887777776655 35778888886542100 000001111
Q ss_pred ccCccEEEEcC
Q psy17793 163 KESFDRILLDA 173 (397)
Q Consensus 163 ~~~fD~Il~Dp 173 (397)
+..|.|+..+
T Consensus 81 -g~~d~vi~~a 90 (258)
T PRK07890 81 -GRVDALVNNA 90 (258)
T ss_pred -CCccEEEECC
Confidence 4689999866
No 395
>PRK07832 short chain dehydrogenase; Provisional
Probab=78.22 E-value=51 Score=31.04 Aligned_cols=83 Identities=12% Similarity=0.067 Sum_probs=47.8
Q ss_pred EEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccCcc
Q psy17793 89 VLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFD 167 (397)
Q Consensus 89 VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD 167 (397)
+|=.| |+|+.+..++..+. .+..|+.++.+++.++.+.+.+...+...+.+...|..+...- ..-........+..|
T Consensus 3 vlItG-as~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~-~~~~~~~~~~~~~id 80 (272)
T PRK07832 3 CFVTG-AASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAV-AAFAADIHAAHGSMD 80 (272)
T ss_pred EEEeC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHH-HHHHHHHHHhcCCCC
Confidence 33344 46777777776443 4567889999988887777666665544455567787653210 000000001124689
Q ss_pred EEEEcC
Q psy17793 168 RILLDA 173 (397)
Q Consensus 168 ~Il~Dp 173 (397)
.|+..+
T Consensus 81 ~lv~~a 86 (272)
T PRK07832 81 VVMNIA 86 (272)
T ss_pred EEEECC
Confidence 999855
No 396
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=78.06 E-value=4.1 Score=38.26 Aligned_cols=131 Identities=18% Similarity=0.159 Sum_probs=75.0
Q ss_pred hHHHHHhccCCC----C----CCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcc
Q psy17793 73 PSILAGHYLDVQ----P----GQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144 (397)
Q Consensus 73 ~S~l~~~~L~~~----~----g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D 144 (397)
+|.+++.+|... . .-++||+||=+..-..... +--.|+++|+++.- -.+...|
T Consensus 31 SSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~----~~fdvt~IDLns~~---------------~~I~qqD 91 (219)
T PF11968_consen 31 SSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTS----GWFDVTRIDLNSQH---------------PGILQQD 91 (219)
T ss_pred hhHHHHHHhhhhccccccccccceEEeecccCCCCccccc----CceeeEEeecCCCC---------------CCceeec
Confidence 667766666421 1 1489999998554332222 23459999997732 2356678
Q ss_pred cccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccc
Q psy17793 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIP 224 (397)
Q Consensus 145 ~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~ 224 (397)
+.+.+. +.-..++||+|.+ | +.- .+. +.... --++|.+ +.+
T Consensus 92 Fm~rpl--------p~~~~e~FdvIs~----S-------LVL--NfV--P~p~~-----RG~Ml~r-----------~~~ 132 (219)
T PF11968_consen 92 FMERPL--------PKNESEKFDVISL----S-------LVL--NFV--PDPKQ-----RGEMLRR-----------AHK 132 (219)
T ss_pred cccCCC--------CCCcccceeEEEE----E-------EEE--eeC--CCHHH-----HHHHHHH-----------HHH
Confidence 776531 1123568999875 1 000 000 01111 1467788 999
Q ss_pred cccCCcE-----EEEEe---cCCC-ccccHHHHHHHHHHCCCcEEEe
Q psy17793 225 LLKKDGI-----LVYCT---CSLS-VEENEAVIAWILHRHPEVELVQ 262 (397)
Q Consensus 225 lLkpgG~-----lvysT---CS~~-~eEnE~vV~~~L~~~~~~~l~~ 262 (397)
+|+++|. |+..+ |--+ .--+++....+++.. +|..+.
T Consensus 133 fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~L-Gf~~~~ 178 (219)
T PF11968_consen 133 FLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESL-GFTRVK 178 (219)
T ss_pred HhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhC-CcEEEE
Confidence 9999999 76653 4322 234566677777776 455554
No 397
>PRK08703 short chain dehydrogenase; Provisional
Probab=77.77 E-value=57 Score=29.90 Aligned_cols=88 Identities=13% Similarity=0.065 Sum_probs=53.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchh---hHHHhh
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQI---DIERMK 160 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~---d~~~~~ 160 (397)
.+.+||=.| |+|+.+.+++..+ ..+.+|++++.++.+++.+.+.+...+-..+.+...|..+....... +.-...
T Consensus 5 ~~k~vlItG-~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~~ 83 (239)
T PRK08703 5 SDKTILVTG-ASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAEA 83 (239)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHHH
Confidence 356788887 4677787777654 34568999999999888877777665544455666676432100000 000001
Q ss_pred hcccCccEEEEcCC
Q psy17793 161 LQKESFDRILLDAP 174 (397)
Q Consensus 161 ~~~~~fD~Il~DpP 174 (397)
+ .+.+|.|+..+-
T Consensus 84 ~-~~~id~vi~~ag 96 (239)
T PRK08703 84 T-QGKLDGIVHCAG 96 (239)
T ss_pred h-CCCCCEEEEecc
Confidence 1 146899998664
No 398
>PRK09072 short chain dehydrogenase; Provisional
Probab=77.13 E-value=53 Score=30.66 Aligned_cols=84 Identities=13% Similarity=0.105 Sum_probs=50.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhccc
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE 164 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~ 164 (397)
+..+|=.|++ |+.+..++..+ ..+.+|++++.++..++.+...+ ..+ .++.++..|..+...- .+........+
T Consensus 5 ~~~vlItG~s-~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~-~~~~~~~~D~~d~~~~--~~~~~~~~~~~ 79 (263)
T PRK09072 5 DKRVLLTGAS-GGIGQALAEALAAAGARLLLVGRNAEKLEALAARL-PYP-GRHRWVVADLTSEAGR--EAVLARAREMG 79 (263)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-hcC-CceEEEEccCCCHHHH--HHHHHHHHhcC
Confidence 4566666654 66777777644 34568999999998887776555 222 3577888888764210 00000000125
Q ss_pred CccEEEEcCC
Q psy17793 165 SFDRILLDAP 174 (397)
Q Consensus 165 ~fD~Il~DpP 174 (397)
.+|.|+..+.
T Consensus 80 ~id~lv~~ag 89 (263)
T PRK09072 80 GINVLINNAG 89 (263)
T ss_pred CCCEEEECCC
Confidence 6899998653
No 399
>KOG2912|consensus
Probab=76.98 E-value=2.6 Score=41.82 Aligned_cols=84 Identities=11% Similarity=0.115 Sum_probs=53.2
Q ss_pred EEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccchhhHHHhhhcccCccE
Q psy17793 90 LDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDR 168 (397)
Q Consensus 90 LDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~ 168 (397)
+|+|.|.--.--.+...+ ..-...|.|++...+..+++|+.+++++. |.++.....+..- .|... ...+..||.
T Consensus 107 iDIgtgasci~~llg~rq-~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll---~d~~~-~~~e~~ydF 181 (419)
T KOG2912|consen 107 IDIGTGASCIYPLLGARQ-NNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLL---MDALK-EESEIIYDF 181 (419)
T ss_pred eeccCchhhhHHhhhchh-ccceeeeeeccccccchhhccccccccccceeeEEecchhhcc---hhhhc-cCccceeeE
Confidence 688776544333333333 34678999999999999999999999865 5555543322110 01100 012346999
Q ss_pred EEEcCCCCCC
Q psy17793 169 ILLDAPCSGF 178 (397)
Q Consensus 169 Il~DpPCSg~ 178 (397)
++||||-.-.
T Consensus 182 cMcNPPFfe~ 191 (419)
T KOG2912|consen 182 CMCNPPFFEN 191 (419)
T ss_pred EecCCchhhc
Confidence 9999997654
No 400
>PRK08265 short chain dehydrogenase; Provisional
Probab=76.85 E-value=49 Score=30.99 Aligned_cols=82 Identities=10% Similarity=-0.037 Sum_probs=48.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhcc
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQK 163 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~~ 163 (397)
+.++|=.|+ +|+.+.+++..+ ..+.+|+.+|.++..++.+.+. .+ .++.++..|..+...- .+. ......-
T Consensus 6 ~k~vlItGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~---~~-~~~~~~~~Dl~~~~~~--~~~~~~~~~~~ 78 (261)
T PRK08265 6 GKVAIVTGG-ATLIGAAVARALVAAGARVAIVDIDADNGAAVAAS---LG-ERARFIATDITDDAAI--ERAVATVVARF 78 (261)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---hC-CeeEEEEecCCCHHHH--HHHHHHHHHHh
Confidence 567776664 566777777654 3456899999988766554433 33 3477788888764210 000 0000012
Q ss_pred cCccEEEEcCC
Q psy17793 164 ESFDRILLDAP 174 (397)
Q Consensus 164 ~~fD~Il~DpP 174 (397)
+..|.++.++-
T Consensus 79 g~id~lv~~ag 89 (261)
T PRK08265 79 GRVDILVNLAC 89 (261)
T ss_pred CCCCEEEECCC
Confidence 46899998663
No 401
>PRK07478 short chain dehydrogenase; Provisional
Probab=76.77 E-value=63 Score=29.90 Aligned_cols=86 Identities=10% Similarity=0.014 Sum_probs=54.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhcc
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQK 163 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~~ 163 (397)
+..+|=.|+ +|+.+.+++..+ ..+.+|+..+.++..++.+.+.++..+. ++.++..|..+...- ... ......-
T Consensus 6 ~k~~lItGa-s~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~--~~~~~~~~~~~ 81 (254)
T PRK07478 6 GKVAIITGA-SSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGG-EAVALAGDVRDEAYA--KALVALAVERF 81 (254)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHH--HHHHHHHHHhc
Confidence 556775554 467777777654 3456899999999988888777776663 577778888654210 000 0000112
Q ss_pred cCccEEEEcCCC
Q psy17793 164 ESFDRILLDAPC 175 (397)
Q Consensus 164 ~~fD~Il~DpPC 175 (397)
+.+|.++.++..
T Consensus 82 ~~id~li~~ag~ 93 (254)
T PRK07478 82 GGLDIAFNNAGT 93 (254)
T ss_pred CCCCEEEECCCC
Confidence 478999987753
No 402
>PRK06101 short chain dehydrogenase; Provisional
Probab=76.75 E-value=41 Score=31.05 Aligned_cols=55 Identities=22% Similarity=0.237 Sum_probs=37.3
Q ss_pred eEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccc
Q psy17793 88 KVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRI 148 (397)
Q Consensus 88 ~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~ 148 (397)
.+| +..|+|+.+.+++..+. .+.+|++++.++++++.+.+. + .++.++.+|..+.
T Consensus 3 ~vl-ItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~----~-~~~~~~~~D~~~~ 58 (240)
T PRK06101 3 AVL-ITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQ----S-ANIFTLAFDVTDH 58 (240)
T ss_pred EEE-EEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh----c-CCCeEEEeeCCCH
Confidence 344 34467888888887653 456899999998876655432 2 3567778888764
No 403
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.74 E-value=55 Score=30.01 Aligned_cols=85 Identities=12% Similarity=0.052 Sum_probs=52.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhcc
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQK 163 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~~ 163 (397)
+.+||=.| |+|+.+.+++..+ ..+.+|++++.++...+.+...++. + .++.++.+|..+...- ... .......
T Consensus 5 ~~~vlItG-asg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~-~~~~~~~~D~~~~~~~--~~~~~~~~~~~ 79 (251)
T PRK07231 5 GKVAIVTG-ASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-G-GRAIAVAADVSDEADV--EAAVAAALERF 79 (251)
T ss_pred CcEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-C-CeEEEEECCCCCHHHH--HHHHHHHHHHh
Confidence 45666665 4567777777654 3456899999999888777666554 2 3477888888764210 000 0000012
Q ss_pred cCccEEEEcCCC
Q psy17793 164 ESFDRILLDAPC 175 (397)
Q Consensus 164 ~~fD~Il~DpPC 175 (397)
+.+|.|+..+..
T Consensus 80 ~~~d~vi~~ag~ 91 (251)
T PRK07231 80 GSVDILVNNAGT 91 (251)
T ss_pred CCCCEEEECCCC
Confidence 468999987654
No 404
>KOG4174|consensus
Probab=76.63 E-value=58 Score=31.53 Aligned_cols=148 Identities=19% Similarity=0.206 Sum_probs=86.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHH------HHHHHHH---HHhCCCcEEEEEcccccccccchh
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRV------TKLEETI---KKLQLSSIQTHVYDSTRINTSSQI 154 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl------~~l~~n~---~~~g~~~v~~~~~D~~~~~~~~~~ 154 (397)
...+||-+|=|-=.++..|+...+ ..+.|+|...+..-. -.+++|+ +++|+. .+...|++.+...
T Consensus 56 ~~~~ill~gEgdFSfs~sl~~~~g~sa~ni~atSlDsk~~dl~~KY~~~~~nv~~Lk~lG~~--I~h~Vdv~sl~~~--- 130 (282)
T KOG4174|consen 56 KKQKILLVGEGDFSFSLSLAPHFGRSAGNITATSLDSKEFDLKQKYPDAKENVEALKRLGGT--ILHGVDVTSLKFH--- 130 (282)
T ss_pred ccccEEEecccchhhHHHHHHHhCccccceeeeeccchhhhhhhcccchHHHHHHHHHcCCc--eEecccceeEEec---
Confidence 456899888888888888887665 456677766554431 1234444 556653 3444555554311
Q ss_pred hHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhcccccccccccc-CCcEEE
Q psy17793 155 DIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLK-KDGILV 233 (397)
Q Consensus 155 d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLk-pgG~lv 233 (397)
+.+..+.||.|+.+-|-+|.|.+.+... ..+.....+-+.+|+. |-.+|+ ..|.|+
T Consensus 131 ----~~~~~~~~d~IiFNFPH~G~g~~~e~d~--------~~i~~~qkL~rgFle~-----------akemL~~edGeI~ 187 (282)
T KOG4174|consen 131 ----ADLRLQRYDNIIFNFPHSGKGIKFEQDR--------NIIPLHQKLFRGFLES-----------AKEMLKDEDGEIH 187 (282)
T ss_pred ----ccccccccceEEEcCCCCCCCcccccch--------HHHHHHHHHHHHHHHH-----------HHHHHHhcCCcEE
Confidence 1245578999999999999986422110 1111122333566777 888998 778877
Q ss_pred EEecCCCccccHHHHHHHHHHCCCcEEEe
Q psy17793 234 YCTCSLSVEENEAVIAWILHRHPEVELVQ 262 (397)
Q Consensus 234 ysTCS~~~eEnE~vV~~~L~~~~~~~l~~ 262 (397)
.+--+..| =|...++.+.+.. ++.+..
T Consensus 188 itlk~t~P-~~~W~ik~Lak~~-gl~L~~ 214 (282)
T KOG4174|consen 188 ITLKTTYP-FNPWNIKFLAKEF-GLTLLE 214 (282)
T ss_pred EEeccCCC-CchhhhhHhhhhc-cccchh
Confidence 65322222 2334555544444 555543
No 405
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=76.48 E-value=45 Score=31.05 Aligned_cols=85 Identities=11% Similarity=0.060 Sum_probs=50.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQ 162 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~ 162 (397)
.|.+||=.|++ |+.+..++..+ ..+..|+.++.+ ...+.+.+.+...+ .++.++..|..+...- ... ....-.
T Consensus 14 ~~k~vlItGas-~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~i--~~~~~~~~~~ 88 (258)
T PRK06935 14 DGKVAIVTGGN-TGLGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKEG-RKVTFVQVDLTKPESA--EKVVKEALEE 88 (258)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhcC-CceEEEEcCCCCHHHH--HHHHHHHHHH
Confidence 46778877765 56677777654 345678888887 55566666666555 3577888888764210 000 000001
Q ss_pred ccCccEEEEcCC
Q psy17793 163 KESFDRILLDAP 174 (397)
Q Consensus 163 ~~~fD~Il~DpP 174 (397)
.+.+|.++..+.
T Consensus 89 ~g~id~li~~ag 100 (258)
T PRK06935 89 FGKIDILVNNAG 100 (258)
T ss_pred cCCCCEEEECCC
Confidence 246899998664
No 406
>PRK06198 short chain dehydrogenase; Provisional
Probab=76.28 E-value=52 Score=30.48 Aligned_cols=86 Identities=10% Similarity=0.075 Sum_probs=50.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHcC-CCcE-EEEEeCCHHHHHHHHHHHHHhCCCcEEEEEccccccccc-chhhHHHhhh
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLMN-DTGT-LIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTS-SQIDIERMKL 161 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~~-~~~~-V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~-~~~d~~~~~~ 161 (397)
.+..||=.| |+|+.+.+++..+. .+.+ |+.++.++...+.....+...+ ..+.++..|..+...- ...+.....+
T Consensus 5 ~~k~vlItG-a~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (260)
T PRK06198 5 DGKVALVTG-GTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALG-AKAVFVQADLSDVEDCRRVVAAADEAF 82 (260)
T ss_pred CCcEEEEeC-CCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 356777666 46778888876553 3445 9999998877765555554444 2467778888754210 0000000011
Q ss_pred cccCccEEEEcCC
Q psy17793 162 QKESFDRILLDAP 174 (397)
Q Consensus 162 ~~~~fD~Il~DpP 174 (397)
+.+|.|+..+-
T Consensus 83 --g~id~li~~ag 93 (260)
T PRK06198 83 --GRLDALVNAAG 93 (260)
T ss_pred --CCCCEEEECCC
Confidence 46899998654
No 407
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=76.25 E-value=62 Score=29.56 Aligned_cols=86 Identities=14% Similarity=0.067 Sum_probs=53.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhcc
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQK 163 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~~ 163 (397)
+.+||=.|+ +|+.+.+++..+ ..+.+|++++.++..+..+...+...+ .++.++.+|..+...- .+. ......-
T Consensus 6 ~~~ilItGa-sg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~~--~~~~~~~~~~~ 81 (251)
T PRK12826 6 GRVALVTGA-ARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAG-GKARARQVDVRDRAAL--KAAVAAGVEDF 81 (251)
T ss_pred CCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEECCCCCHHHH--HHHHHHHHHHh
Confidence 567886664 677788777654 345689999999887777666665544 3578888888754210 000 0000011
Q ss_pred cCccEEEEcCCC
Q psy17793 164 ESFDRILLDAPC 175 (397)
Q Consensus 164 ~~fD~Il~DpPC 175 (397)
+.+|.|+..+..
T Consensus 82 ~~~d~vi~~ag~ 93 (251)
T PRK12826 82 GRLDILVANAGI 93 (251)
T ss_pred CCCCEEEECCCC
Confidence 368999987643
No 408
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=76.13 E-value=26 Score=35.97 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=28.6
Q ss_pred ccccccCCcEEEEEecCCCccccHHHHHHHHHHCCCc
Q psy17793 222 GIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEV 258 (397)
Q Consensus 222 a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~~ 258 (397)
..+.||+|-.+++-+ |..|--.|+++.++++..+++
T Consensus 114 Ia~~L~kG~LVIlES-T~~PGTTe~v~~plle~~sgL 149 (436)
T COG0677 114 IAPVLKKGDLVILES-TTPPGTTEEVVKPLLEERSGL 149 (436)
T ss_pred HHHhcCCCCEEEEec-CCCCCcHHHHHHHHHhhcCCC
Confidence 677899988887763 567888999999999985543
No 409
>PRK05855 short chain dehydrogenase; Validated
Probab=76.06 E-value=42 Score=35.14 Aligned_cols=85 Identities=15% Similarity=0.127 Sum_probs=55.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhcc
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQK 163 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~~ 163 (397)
+.++|=.| |+|+.+.++|..+. .+.+|+.++.+...++.+.+.++..|. ++.++..|.++...- ... .......
T Consensus 315 ~~~~lv~G-~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~~--~~~~~~~~~~~ 390 (582)
T PRK05855 315 GKLVVVTG-AGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGA-VAHAYRVDVSDADAM--EAFAEWVRAEH 390 (582)
T ss_pred CCEEEEEC-CcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHH--HHHHHHHHHhc
Confidence 45666555 46778888887553 456799999999888888777776664 578888998765210 000 0000112
Q ss_pred cCccEEEEcCC
Q psy17793 164 ESFDRILLDAP 174 (397)
Q Consensus 164 ~~fD~Il~DpP 174 (397)
+.+|.++.++-
T Consensus 391 g~id~lv~~Ag 401 (582)
T PRK05855 391 GVPDIVVNNAG 401 (582)
T ss_pred CCCcEEEECCc
Confidence 56899998664
No 410
>PRK12746 short chain dehydrogenase; Provisional
Probab=76.00 E-value=55 Score=30.21 Aligned_cols=61 Identities=15% Similarity=0.053 Sum_probs=37.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHcCC-CcEEEEE-eCCHHHHHHHHHHHHHhCCCcEEEEEcccccc
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLMND-TGTLIAL-DKSKPRVTKLEETIKKLQLSSIQTHVYDSTRI 148 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~~~-~~~V~av-D~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~ 148 (397)
+.+||=.| |+|+.+.+++..+.. +.+|+.. ..+...++.+...+...+ ..+.++..|..+.
T Consensus 6 ~~~ilItG-asg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~d~ 68 (254)
T PRK12746 6 GKVALVTG-ASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESNG-GKAFLIEADLNSI 68 (254)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC-CcEEEEEcCcCCH
Confidence 45777666 578889888876543 3455443 556655554444443333 2477888888765
No 411
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=75.81 E-value=18 Score=35.46 Aligned_cols=52 Identities=21% Similarity=0.253 Sum_probs=35.9
Q ss_pred cCCCCCCeEEEEcC--CCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793 81 LDVQPGQKVLDMCA--APGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS 137 (397)
Q Consensus 81 L~~~~g~~VLDlca--gpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~ 137 (397)
..+++|++||=.|+ +-|..+.++|..+ +.+|++.+.++++.+.+++. +|.+.
T Consensus 147 ~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~--G~~Vi~~~~~~~~~~~~~~~---lGa~~ 200 (338)
T cd08295 147 CKPKKGETVFVSAASGAVGQLVGQLAKLK--GCYVVGSAGSDEKVDLLKNK---LGFDD 200 (338)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHh---cCCce
Confidence 45788999997775 3445556667664 35799999888887776542 57654
No 412
>PRK07024 short chain dehydrogenase; Provisional
Probab=75.72 E-value=56 Score=30.42 Aligned_cols=82 Identities=12% Similarity=0.051 Sum_probs=50.1
Q ss_pred CeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhccc
Q psy17793 87 QKVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQKE 164 (397)
Q Consensus 87 ~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~~~ 164 (397)
.+||=.| |+|+.+.+++..+. .+.+|+.+|.++++++.+.+.+...+ ++.++..|.++... ..+. .......+
T Consensus 3 ~~vlItG-as~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~--i~~~~~~~~~~~g 77 (257)
T PRK07024 3 LKVFITG-ASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAA--RVSVYAADVRDADA--LAAAAADFIAAHG 77 (257)
T ss_pred CEEEEEc-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCC--eeEEEEcCCCCHHH--HHHHHHHHHHhCC
Confidence 3555555 46788888887553 44589999999888776655544332 67888889876421 0000 00001124
Q ss_pred CccEEEEcC
Q psy17793 165 SFDRILLDA 173 (397)
Q Consensus 165 ~fD~Il~Dp 173 (397)
.+|.|+.++
T Consensus 78 ~id~lv~~a 86 (257)
T PRK07024 78 LPDVVIANA 86 (257)
T ss_pred CCCEEEECC
Confidence 589999865
No 413
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=75.72 E-value=23 Score=32.87 Aligned_cols=77 Identities=12% Similarity=0.030 Sum_probs=52.2
Q ss_pred EEechhHHHHHhc-cCCCCCCeEEEEcCCCChHHHHHHHHcCC---CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEc
Q psy17793 68 ILQNLPSILAGHY-LDVQPGQKVLDMCAAPGNKLTHIALLMND---TGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVY 143 (397)
Q Consensus 68 ~~Qd~~S~l~~~~-L~~~~g~~VLDlcagpG~kt~~lA~~~~~---~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~ 143 (397)
.+|.+.-++.-+. |--...+.|++.|+.-||-++..|..|-. ..+|+++|+|-.-+...... .+.|.++++
T Consensus 51 ~~k~p~D~~~yQellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~p~i~f~eg 125 (237)
T COG3510 51 CIKSPSDMWNYQELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----VPDILFIEG 125 (237)
T ss_pred ccCCHHHHHHHHHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----CCCeEEEeC
Confidence 3566555544332 22233468999999999999998886632 35899999986654433221 577999999
Q ss_pred cccccc
Q psy17793 144 DSTRIN 149 (397)
Q Consensus 144 D~~~~~ 149 (397)
+.+...
T Consensus 126 ss~dpa 131 (237)
T COG3510 126 SSTDPA 131 (237)
T ss_pred CCCCHH
Confidence 988753
No 414
>KOG0022|consensus
Probab=75.65 E-value=6.4 Score=39.18 Aligned_cols=57 Identities=14% Similarity=0.152 Sum_probs=43.8
Q ss_pred HHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793 77 AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS 137 (397)
Q Consensus 77 ~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~ 137 (397)
+....+++||+.|.=.|.|.=|.+........+.++|+|+|++++.++.++ ++|++.
T Consensus 184 a~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak----~fGaTe 240 (375)
T KOG0022|consen 184 AWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAK----EFGATE 240 (375)
T ss_pred hhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHH----hcCcce
Confidence 344567899999988888776666666566667899999999999998875 467653
No 415
>PRK05717 oxidoreductase; Validated
Probab=75.55 E-value=64 Score=29.96 Aligned_cols=85 Identities=15% Similarity=0.065 Sum_probs=51.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhhc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKLQ 162 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~~ 162 (397)
.|.+||=.|+ +|+.+.++|..+. .+.+|+.+|.++.+.+.+.+ ..+ .++.++..|.++...-. ..+.. ...
T Consensus 9 ~~k~vlItG~-sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~---~~~-~~~~~~~~Dl~~~~~~~~~~~~~--~~~ 81 (255)
T PRK05717 9 NGRVALVTGA-ARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAK---ALG-ENAWFIAMDVADEAQVAAGVAEV--LGQ 81 (255)
T ss_pred CCCEEEEeCC-cchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH---HcC-CceEEEEccCCCHHHHHHHHHHH--HHH
Confidence 3667886665 5778888887663 45689999988776554432 233 34778888887642100 00000 001
Q ss_pred ccCccEEEEcCCCC
Q psy17793 163 KESFDRILLDAPCS 176 (397)
Q Consensus 163 ~~~fD~Il~DpPCS 176 (397)
-+.+|.|+..+...
T Consensus 82 ~g~id~li~~ag~~ 95 (255)
T PRK05717 82 FGRLDALVCNAAIA 95 (255)
T ss_pred hCCCCEEEECCCcc
Confidence 14689999977543
No 416
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=75.52 E-value=7.6 Score=39.13 Aligned_cols=49 Identities=24% Similarity=0.358 Sum_probs=38.3
Q ss_pred ccCCCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHH
Q psy17793 80 YLDVQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEET 129 (397)
Q Consensus 80 ~L~~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n 129 (397)
...+.+|++||..|+|+ |..+.++|..++ ..+|+++|.++++++.+++.
T Consensus 179 ~~~~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 179 LAEVKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARSH 228 (386)
T ss_pred hccCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHc
Confidence 44567899999998877 677778888753 34699999999998887764
No 417
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=75.17 E-value=15 Score=35.92 Aligned_cols=52 Identities=21% Similarity=0.339 Sum_probs=34.7
Q ss_pred CCCCC--CeEEEEcC--CCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793 82 DVQPG--QKVLDMCA--APGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS 137 (397)
Q Consensus 82 ~~~~g--~~VLDlca--gpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~ 137 (397)
..++| ++||=.|+ |.|..++++|..++ ..+|++++.++++.+.+++ ++|++.
T Consensus 149 ~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G-~~~Vi~~~~s~~~~~~~~~---~lGa~~ 204 (345)
T cd08293 149 HITPGANQTMVVSGAAGACGSLAGQIGRLLG-CSRVVGICGSDEKCQLLKS---ELGFDA 204 (345)
T ss_pred cCCCCCCCEEEEECCCcHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH---hcCCcE
Confidence 35555 88887775 34556667777652 2279999999888776654 267654
No 418
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=75.13 E-value=71 Score=29.65 Aligned_cols=86 Identities=13% Similarity=0.076 Sum_probs=54.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQ 162 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~ 162 (397)
.+.+||=.|++ |+.+.+++..+ ..+.+|+.++.+....+.+...++..+. ++.++..|.++...- .+. ......
T Consensus 10 ~~k~vlVtG~s-~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~i--~~~~~~~~~~ 85 (255)
T PRK06113 10 DGKCAIITGAG-AGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG-QAFACRCDITSEQEL--SALADFALSK 85 (255)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHH--HHHHHHHHHH
Confidence 36788888854 66677677644 3456788899998888877776666553 467778888765210 000 000011
Q ss_pred ccCccEEEEcCC
Q psy17793 163 KESFDRILLDAP 174 (397)
Q Consensus 163 ~~~fD~Il~DpP 174 (397)
-+.+|.|+..+-
T Consensus 86 ~~~~d~li~~ag 97 (255)
T PRK06113 86 LGKVDILVNNAG 97 (255)
T ss_pred cCCCCEEEECCC
Confidence 246899998664
No 419
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=75.05 E-value=68 Score=29.43 Aligned_cols=83 Identities=16% Similarity=0.105 Sum_probs=51.9
Q ss_pred eEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhcccC
Q psy17793 88 KVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQKES 165 (397)
Q Consensus 88 ~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~~~~ 165 (397)
+||=.| |+|+.+.+++..+ ..+.+|++++.++...+.+...++..+ .++.++..|..+...- .+. .......+.
T Consensus 3 ~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~--~~~~~~~~~~~~~ 78 (255)
T TIGR01963 3 TALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAG-GSVIYLVADVTKEDEI--ADMIAAAAAEFGG 78 (255)
T ss_pred EEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CceEEEECCCCCHHHH--HHHHHHHHHhcCC
Confidence 455555 5688888888654 345589999999988888777666555 3578888888764200 000 000001245
Q ss_pred ccEEEEcCC
Q psy17793 166 FDRILLDAP 174 (397)
Q Consensus 166 fD~Il~DpP 174 (397)
.|.|+..+-
T Consensus 79 ~d~vi~~a~ 87 (255)
T TIGR01963 79 LDILVNNAG 87 (255)
T ss_pred CCEEEECCC
Confidence 899998664
No 420
>PRK09291 short chain dehydrogenase; Provisional
Probab=75.02 E-value=54 Score=30.27 Aligned_cols=79 Identities=20% Similarity=0.157 Sum_probs=52.2
Q ss_pred CeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccC
Q psy17793 87 QKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKES 165 (397)
Q Consensus 87 ~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~ 165 (397)
.+||=.|+ +|+.+.+++..+ ..+..|++.+.++...+.+.+..+..+. ++.++..|..+... .. ......
T Consensus 3 ~~vlVtGa-sg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~-----~~--~~~~~~ 73 (257)
T PRK09291 3 KTILITGA-GSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGL-ALRVEKLDLTDAID-----RA--QAAEWD 73 (257)
T ss_pred CEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cceEEEeeCCCHHH-----HH--HHhcCC
Confidence 45666665 677888777654 3456899999988887777776666654 47788888865421 00 112247
Q ss_pred ccEEEEcCC
Q psy17793 166 FDRILLDAP 174 (397)
Q Consensus 166 fD~Il~DpP 174 (397)
.|.|+.++-
T Consensus 74 id~vi~~ag 82 (257)
T PRK09291 74 VDVLLNNAG 82 (257)
T ss_pred CCEEEECCC
Confidence 899998653
No 421
>smart00359 PUA Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase.
Probab=74.82 E-value=2.7 Score=31.95 Aligned_cols=30 Identities=37% Similarity=0.655 Sum_probs=26.4
Q ss_pred EEEechhhhhhhhcccceecccccccCCCC
Q psy17793 347 QIIVDQPCALAVLRGADVFAPGVLAMPLGK 376 (397)
Q Consensus 347 ~v~vd~~c~~a~LrGa~v~~pg~~~~~~~~ 376 (397)
++.||..+..++++|+.||.|||..++..+
T Consensus 2 ~i~v~~~~~~~i~~g~~v~~~~v~~~~~~~ 31 (77)
T smart00359 2 KVVVDDGAVKAILNGASLLAPGVVRVDGGI 31 (77)
T ss_pred EEEEchhHHHHHHcCCCcccceeEEEeCCc
Confidence 578999999999999999999999887543
No 422
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=74.69 E-value=5.8 Score=39.28 Aligned_cols=47 Identities=4% Similarity=-0.050 Sum_probs=32.3
Q ss_pred CCCCCCeEEEEcCCCChH-HHHHHHHcCCCcEEEEEeCCHHHHHHHHH
Q psy17793 82 DVQPGQKVLDMCAAPGNK-LTHIALLMNDTGTLIALDKSKPRVTKLEE 128 (397)
Q Consensus 82 ~~~~g~~VLDlcagpG~k-t~~lA~~~~~~~~V~avD~s~~rl~~l~~ 128 (397)
.+++|++||=.|||+=|. +.++|..+.+..+|+++|.++++++.+++
T Consensus 160 ~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 160 AHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence 357899999988644332 33445543344689999999999888753
No 423
>PRK05650 short chain dehydrogenase; Provisional
Probab=74.67 E-value=70 Score=30.00 Aligned_cols=82 Identities=13% Similarity=0.031 Sum_probs=51.0
Q ss_pred eEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhcccC
Q psy17793 88 KVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQKES 165 (397)
Q Consensus 88 ~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~~~~ 165 (397)
+||=.| |+|+.+.+++..+ ..+.+|+.++.+...++.+...++..+ .++.++.+|..+...- .+. .......+.
T Consensus 2 ~vlVtG-asggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~--~~~~~~i~~~~~~ 77 (270)
T PRK05650 2 RVMITG-AASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAG-GDGFYQRCDVRDYSQL--TALAQACEEKWGG 77 (270)
T ss_pred EEEEec-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CceEEEEccCCCHHHH--HHHHHHHHHHcCC
Confidence 455445 5677777777654 345689999999988887777776655 3577788888754210 000 000011246
Q ss_pred ccEEEEcC
Q psy17793 166 FDRILLDA 173 (397)
Q Consensus 166 fD~Il~Dp 173 (397)
+|.|+.++
T Consensus 78 id~lI~~a 85 (270)
T PRK05650 78 IDVIVNNA 85 (270)
T ss_pred CCEEEECC
Confidence 89999855
No 424
>PLN02740 Alcohol dehydrogenase-like
Probab=74.51 E-value=35 Score=34.23 Aligned_cols=50 Identities=18% Similarity=0.178 Sum_probs=34.3
Q ss_pred cCCCCCCeEEEEcCCCChHHH---HHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793 81 LDVQPGQKVLDMCAAPGNKLT---HIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS 137 (397)
Q Consensus 81 L~~~~g~~VLDlcagpG~kt~---~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~ 137 (397)
..+++|++||=.|+ |+.+. ++|..+ +..+|+++|.++++++.++ ++|.+.
T Consensus 194 ~~~~~g~~VlV~G~--G~vG~~a~q~ak~~-G~~~Vi~~~~~~~r~~~a~----~~Ga~~ 246 (381)
T PLN02740 194 ANVQAGSSVAIFGL--GAVGLAVAEGARAR-GASKIIGVDINPEKFEKGK----EMGITD 246 (381)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHC-CCCcEEEEcCChHHHHHHH----HcCCcE
Confidence 45788999998875 45544 444443 2236999999999988774 467643
No 425
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=74.38 E-value=81 Score=29.97 Aligned_cols=85 Identities=13% Similarity=0.028 Sum_probs=49.3
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEccccccccc-chhhHHHhhh
Q psy17793 85 PGQKVLDMCAAP-GNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTS-SQIDIERMKL 161 (397)
Q Consensus 85 ~g~~VLDlcagp-G~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~-~~~d~~~~~~ 161 (397)
.|..+|=.|++. +|.+..+|..+ ..+.+|+.++.+....+.+++..+..|. ...+..|+.+...- ...+.- ..
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~--~~~~~~Dv~d~~~v~~~~~~~--~~ 81 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGS--DFVLPCDVEDIASVDAVFEAL--EK 81 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCC--ceEEeCCCCCHHHHHHHHHHH--HH
Confidence 367899999886 36777777655 3456788888776544445444444442 23567888754210 000000 01
Q ss_pred cccCccEEEEcC
Q psy17793 162 QKESFDRILLDA 173 (397)
Q Consensus 162 ~~~~fD~Il~Dp 173 (397)
.-+.+|.++.++
T Consensus 82 ~~g~iD~lVnnA 93 (271)
T PRK06505 82 KWGKLDFVVHAI 93 (271)
T ss_pred HhCCCCEEEECC
Confidence 125789998866
No 426
>PRK07985 oxidoreductase; Provisional
Probab=74.37 E-value=85 Score=30.21 Aligned_cols=85 Identities=11% Similarity=-0.008 Sum_probs=49.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCC--HHHHHHHHHHHHHhCCCcEEEEEccccccccc-chhhHHHhh
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDKS--KPRVTKLEETIKKLQLSSIQTHVYDSTRINTS-SQIDIERMK 160 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s--~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~-~~~d~~~~~ 160 (397)
.+.++|-.|+ +|+.+.++|..+. .+..|+.++.+ ....+.+.+.++..+. ++.++..|..+...- ...+....
T Consensus 48 ~~k~vlITGa-s~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~- 124 (294)
T PRK07985 48 KDRKALVTGG-DSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGR-KAVLLPGDLSDEKFARSLVHEAHK- 124 (294)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCC-eEEEEEccCCCHHHHHHHHHHHHH-
Confidence 4668888885 4677777776543 45678777654 3455566655555553 466778888754200 00000001
Q ss_pred hcccCccEEEEcC
Q psy17793 161 LQKESFDRILLDA 173 (397)
Q Consensus 161 ~~~~~fD~Il~Dp 173 (397)
.-+..|.++.++
T Consensus 125 -~~g~id~lv~~A 136 (294)
T PRK07985 125 -ALGGLDIMALVA 136 (294)
T ss_pred -HhCCCCEEEECC
Confidence 125689998865
No 427
>PRK06194 hypothetical protein; Provisional
Probab=74.03 E-value=58 Score=30.82 Aligned_cols=86 Identities=8% Similarity=-0.023 Sum_probs=53.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhcc
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQK 163 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~~ 163 (397)
+.+||=.| |+|+.+.+++..+. .+.+|+.+|.+...++.+.+.+...+. ++.++.+|..+...- ... .......
T Consensus 6 ~k~vlVtG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~d~~~~--~~~~~~~~~~~ 81 (287)
T PRK06194 6 GKVAVITG-AASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGA-EVLGVRTDVSDAAQV--EALADAALERF 81 (287)
T ss_pred CCEEEEeC-CccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCC-eEEEEECCCCCHHHH--HHHHHHHHHHc
Confidence 56777555 55788888887553 456899999998877776666555443 477788898764210 000 0000112
Q ss_pred cCccEEEEcCCC
Q psy17793 164 ESFDRILLDAPC 175 (397)
Q Consensus 164 ~~fD~Il~DpPC 175 (397)
+.+|.|+..+--
T Consensus 82 g~id~vi~~Ag~ 93 (287)
T PRK06194 82 GAVHLLFNNAGV 93 (287)
T ss_pred CCCCEEEECCCC
Confidence 468999987643
No 428
>PRK05872 short chain dehydrogenase; Provisional
Probab=73.97 E-value=60 Score=31.24 Aligned_cols=85 Identities=16% Similarity=0.151 Sum_probs=49.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQ 162 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~ 162 (397)
.|..||=.|+ +|+.+.++|..+. .+.+|+.++.++..++.+.+.+.. + ..+..+..|.++...- ... ......
T Consensus 8 ~gk~vlItGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~-~-~~~~~~~~Dv~d~~~v--~~~~~~~~~~ 82 (296)
T PRK05872 8 AGKVVVVTGA-ARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG-D-DRVLTVVADVTDLAAM--QAAAEEAVER 82 (296)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC-C-CcEEEEEecCCCHHHH--HHHHHHHHHH
Confidence 4677886665 4667777776553 456899999998887766554421 1 2345556787654210 000 000011
Q ss_pred ccCccEEEEcCC
Q psy17793 163 KESFDRILLDAP 174 (397)
Q Consensus 163 ~~~fD~Il~DpP 174 (397)
.+.+|.|+.++-
T Consensus 83 ~g~id~vI~nAG 94 (296)
T PRK05872 83 FGGIDVVVANAG 94 (296)
T ss_pred cCCCCEEEECCC
Confidence 257899998764
No 429
>PTZ00357 methyltransferase; Provisional
Probab=73.83 E-value=11 Score=41.30 Aligned_cols=62 Identities=13% Similarity=0.150 Sum_probs=41.9
Q ss_pred eEEEEcCCCChH---HHHHHHHcCCCcEEEEEeCCHHHHHHHHHHH-HHhCCC--------cEEEEEccccccc
Q psy17793 88 KVLDMCAAPGNK---LTHIALLMNDTGTLIALDKSKPRVTKLEETI-KKLQLS--------SIQTHVYDSTRIN 149 (397)
Q Consensus 88 ~VLDlcagpG~k---t~~lA~~~~~~~~V~avD~s~~rl~~l~~n~-~~~g~~--------~v~~~~~D~~~~~ 149 (397)
.|+=+|||-|-. ++.+++..+-..+|+|+|+++..+..+..+. .....+ .|+++..|.+.+.
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~ 776 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIA 776 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccc
Confidence 588999999966 4445555555678999999976544433332 211222 3899999999884
No 430
>KOG2352|consensus
Probab=73.83 E-value=8 Score=40.43 Aligned_cols=141 Identities=11% Similarity=0.110 Sum_probs=84.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccC
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKES 165 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~ 165 (397)
+..+|=+|=|.|+....+-..+ +...++|++++|.+++.++.+.....-....+...|+....... ....-....
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~-p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~----~k~~~~~~~ 370 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSL-PKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRT----AKSQQEDIC 370 (482)
T ss_pred cCcEEEEecCCCccccceeeec-CccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHH----hhccccccC
Confidence 4467777777788887665443 46799999999999999998876554333455666766553210 000013457
Q ss_pred ccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCccccH
Q psy17793 166 FDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245 (397)
Q Consensus 166 fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~eEnE 245 (397)
||+++.|.--+-+ ...+ .-....+ -..+|.. +-..|.|-|.++.---+-+..-+.
T Consensus 371 ~dvl~~dvds~d~-------~g~~-~pp~~fv------a~~~l~~-----------~k~~l~p~g~f~inlv~r~~~~~~ 425 (482)
T KOG2352|consen 371 PDVLMVDVDSKDS-------HGMQ-CPPPAFV------AQVALQP-----------VKMILPPRGMFIINLVTRNSSFKD 425 (482)
T ss_pred CcEEEEECCCCCc-------ccCc-CCchHHH------HHHHHHH-----------HhhccCccceEEEEEecCCcchhH
Confidence 9999998752111 1111 0001112 1445555 778899999987664444455566
Q ss_pred HHHHHHHHHCC
Q psy17793 246 AVIAWILHRHP 256 (397)
Q Consensus 246 ~vV~~~L~~~~ 256 (397)
++...+-+-++
T Consensus 426 ~~~~~l~~vf~ 436 (482)
T KOG2352|consen 426 EVLMNLAKVFP 436 (482)
T ss_pred HHHHhhhhhhH
Confidence 66665554444
No 431
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=73.72 E-value=70 Score=29.67 Aligned_cols=86 Identities=8% Similarity=-0.057 Sum_probs=52.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHh-CCCcEEEEEcccccccccc-hhhHHHhhhc
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKL-QLSSIQTHVYDSTRINTSS-QIDIERMKLQ 162 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~-g~~~v~~~~~D~~~~~~~~-~~d~~~~~~~ 162 (397)
+..||=.|+ +|+.+.+++..+. .+..|+.+|.+....+.+.+.++.. +-.++.++..|.++...-. ..+.... .
T Consensus 2 ~k~ilItG~-~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~--~ 78 (259)
T PRK12384 2 NQVAVVIGG-GQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDE--I 78 (259)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHH--H
Confidence 346777775 5777777776553 4568999999988877766555433 2235788888887542100 0000001 1
Q ss_pred ccCccEEEEcCC
Q psy17793 163 KESFDRILLDAP 174 (397)
Q Consensus 163 ~~~fD~Il~DpP 174 (397)
-+..|.|+..+-
T Consensus 79 ~~~id~vv~~ag 90 (259)
T PRK12384 79 FGRVDLLVYNAG 90 (259)
T ss_pred cCCCCEEEECCC
Confidence 146899998663
No 432
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=73.72 E-value=44 Score=31.19 Aligned_cols=84 Identities=8% Similarity=0.062 Sum_probs=48.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQ 162 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~ 162 (397)
.|.++|-.|+ +|+.+..+|..+ ..+.+|+.++.+. .+.+.+.++..+ .++.++..|..+...- ... ....-.
T Consensus 7 ~~k~~lItGa-s~gIG~aia~~l~~~G~~vv~~~~~~--~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~--~~~~~~~~~~ 80 (251)
T PRK12481 7 NGKVAIITGC-NTGLGQGMAIGLAKAGADIVGVGVAE--APETQAQVEALG-RKFHFITADLIQQKDI--DSIVSQAVEV 80 (251)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEecCch--HHHHHHHHHHcC-CeEEEEEeCCCCHHHH--HHHHHHHHHH
Confidence 4678887775 566777777654 4556788887653 234444555555 3577888888765210 000 000001
Q ss_pred ccCccEEEEcCC
Q psy17793 163 KESFDRILLDAP 174 (397)
Q Consensus 163 ~~~fD~Il~DpP 174 (397)
-+++|.++.++-
T Consensus 81 ~g~iD~lv~~ag 92 (251)
T PRK12481 81 MGHIDILINNAG 92 (251)
T ss_pred cCCCCEEEECCC
Confidence 256899998653
No 433
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=73.66 E-value=21 Score=34.84 Aligned_cols=50 Identities=22% Similarity=0.195 Sum_probs=33.0
Q ss_pred cCCCCCCeEEEEcCCCChHH---HHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793 81 LDVQPGQKVLDMCAAPGNKL---THIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS 137 (397)
Q Consensus 81 L~~~~g~~VLDlcagpG~kt---~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~ 137 (397)
+.+++|++||=.|+ |+.+ .++|..++ ...|+++|.++++.+.++ ++|++.
T Consensus 159 ~~~~~g~~vlV~G~--G~vG~~~~~~ak~~G-~~~vi~~~~~~~~~~~~~----~~ga~~ 211 (339)
T cd08239 159 VGVSGRDTVLVVGA--GPVGLGALMLARALG-AEDVIGVDPSPERLELAK----ALGADF 211 (339)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHH----HhCCCE
Confidence 45678999988864 4444 44555542 224999999999877654 467643
No 434
>PRK06128 oxidoreductase; Provisional
Probab=73.16 E-value=91 Score=29.99 Aligned_cols=86 Identities=13% Similarity=0.007 Sum_probs=48.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCH--HHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhh
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSK--PRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMK 160 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~--~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~ 160 (397)
.|.+||=.|+ +|+.+.+++..+. .+..|+....+. ...+.+.+.++..+. .+.++..|..+...- .+. ....
T Consensus 54 ~~k~vlITGa-s~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~v--~~~~~~~~ 129 (300)
T PRK06128 54 QGRKALITGA-DSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGR-KAVALPGDLKDEAFC--RQLVERAV 129 (300)
T ss_pred CCCEEEEecC-CCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCC-eEEEEecCCCCHHHH--HHHHHHHH
Confidence 3667887775 5777777776553 345676665543 344555555665553 466778888754210 000 0000
Q ss_pred hcccCccEEEEcCC
Q psy17793 161 LQKESFDRILLDAP 174 (397)
Q Consensus 161 ~~~~~fD~Il~DpP 174 (397)
..-+..|.++.++-
T Consensus 130 ~~~g~iD~lV~nAg 143 (300)
T PRK06128 130 KELGGLDILVNIAG 143 (300)
T ss_pred HHhCCCCEEEECCc
Confidence 01246899998774
No 435
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=72.92 E-value=65 Score=35.39 Aligned_cols=88 Identities=10% Similarity=0.040 Sum_probs=54.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHH-hCCCcEEEEEcccccccccchhhH-HHhhh
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKK-LQLSSIQTHVYDSTRINTSSQIDI-ERMKL 161 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~-~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~ 161 (397)
.+..||=.|+ +|+.+.+++..+ ..+.+|+++|.+...++.+.+.+.. .+...+..+..|.++...- ... .....
T Consensus 413 ~gkvvLVTGa-sggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v--~~a~~~i~~ 489 (676)
T TIGR02632 413 ARRVAFVTGG-AGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAV--KAAFADVAL 489 (676)
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHH--HHHHHHHHH
Confidence 3567776665 577788777654 3457899999999888777655543 3434577788888764210 000 00001
Q ss_pred cccCccEEEEcCCC
Q psy17793 162 QKESFDRILLDAPC 175 (397)
Q Consensus 162 ~~~~fD~Il~DpPC 175 (397)
.-+.+|.|+.++-.
T Consensus 490 ~~g~iDilV~nAG~ 503 (676)
T TIGR02632 490 AYGGVDIVVNNAGI 503 (676)
T ss_pred hcCCCcEEEECCCC
Confidence 12468999987643
No 436
>PRK07814 short chain dehydrogenase; Provisional
Probab=72.84 E-value=81 Score=29.48 Aligned_cols=85 Identities=11% Similarity=0.084 Sum_probs=54.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccch-hhHHHhhhc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQ-IDIERMKLQ 162 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~-~d~~~~~~~ 162 (397)
++..+|=.|+ +|+.+.+++..+ ..+.+|+.++.+++.++.+.+.++..+ ..+.++..|.++...-.. .+.-.. .
T Consensus 9 ~~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~--~ 84 (263)
T PRK07814 9 DDQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAG-RRAHVVAADLAHPEATAGLAGQAVE--A 84 (263)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHH--H
Confidence 4677888885 677888888744 345689999999988887777766554 347778888876421000 000000 1
Q ss_pred ccCccEEEEcC
Q psy17793 163 KESFDRILLDA 173 (397)
Q Consensus 163 ~~~fD~Il~Dp 173 (397)
-+.+|.|+..+
T Consensus 85 ~~~id~vi~~A 95 (263)
T PRK07814 85 FGRLDIVVNNV 95 (263)
T ss_pred cCCCCEEEECC
Confidence 14689998865
No 437
>PRK07791 short chain dehydrogenase; Provisional
Probab=72.59 E-value=63 Score=30.96 Aligned_cols=86 Identities=13% Similarity=0.078 Sum_probs=50.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCH---------HHHHHHHHHHHHhCCCcEEEEEcccccccccchh
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSK---------PRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQI 154 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~---------~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~ 154 (397)
.|..+|=.|++ ++.+..+|..+ ..+..|+.+|.+. ..++.+.+.++..+. ++.++..|..+...- .
T Consensus 5 ~~k~~lITGas-~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~Dv~~~~~v--~ 80 (286)
T PRK07791 5 DGRVVIVTGAG-GGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGG-EAVANGDDIADWDGA--A 80 (286)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCC-ceEEEeCCCCCHHHH--H
Confidence 46778888866 45666666544 3456788888765 556666555555443 466777888764210 0
Q ss_pred hH-HHhhhcccCccEEEEcCC
Q psy17793 155 DI-ERMKLQKESFDRILLDAP 174 (397)
Q Consensus 155 d~-~~~~~~~~~fD~Il~DpP 174 (397)
.. ......-+.+|.++.++-
T Consensus 81 ~~~~~~~~~~g~id~lv~nAG 101 (286)
T PRK07791 81 NLVDAAVETFGGLDVLVNNAG 101 (286)
T ss_pred HHHHHHHHhcCCCCEEEECCC
Confidence 00 000011257899998663
No 438
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=72.42 E-value=76 Score=29.13 Aligned_cols=85 Identities=13% Similarity=0.122 Sum_probs=49.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQ 162 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~ 162 (397)
.|.+||=.|++ |+.+.+++..+. .+..|+.++.++ ...+.+.+++.+ .++.++..|.++...- ... ......
T Consensus 4 ~~k~vlItGas-~gIG~~ia~~l~~~G~~vi~~~r~~--~~~~~~~~~~~~-~~~~~~~~D~~~~~~~--~~~~~~~~~~ 77 (248)
T TIGR01832 4 EGKVALVTGAN-TGLGQGIAVGLAEAGADIVGAGRSE--PSETQQQVEALG-RRFLSLTADLSDIEAI--KALVDSAVEE 77 (248)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCch--HHHHHHHHHhcC-CceEEEECCCCCHHHH--HHHHHHHHHH
Confidence 36678877775 667777777553 345899888765 234455555555 3477888888765210 000 000001
Q ss_pred ccCccEEEEcCCC
Q psy17793 163 KESFDRILLDAPC 175 (397)
Q Consensus 163 ~~~fD~Il~DpPC 175 (397)
.+..|.|+.++-.
T Consensus 78 ~~~~d~li~~ag~ 90 (248)
T TIGR01832 78 FGHIDILVNNAGI 90 (248)
T ss_pred cCCCCEEEECCCC
Confidence 2468999986643
No 439
>PRK05875 short chain dehydrogenase; Provisional
Probab=72.40 E-value=86 Score=29.41 Aligned_cols=86 Identities=9% Similarity=0.085 Sum_probs=53.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEEcccccccccchhhH-HHhhhc
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQ-LSSIQTHVYDSTRINTSSQIDI-ERMKLQ 162 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g-~~~v~~~~~D~~~~~~~~~~d~-~~~~~~ 162 (397)
+.++|=.|++ |+.+.+++..+ ..+.+|++++.++...+...+.+...+ ..++.++..|..+...- ... ......
T Consensus 7 ~k~vlItGas-g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~--~~~~~~~~~~ 83 (276)
T PRK05875 7 DRTYLVTGGG-SGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQV--ARAVDAATAW 83 (276)
T ss_pred CCEEEEECCC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHH--HHHHHHHHHH
Confidence 5688877754 77888888755 345589999999887776666655443 24577888888654210 000 000001
Q ss_pred ccCccEEEEcCC
Q psy17793 163 KESFDRILLDAP 174 (397)
Q Consensus 163 ~~~fD~Il~DpP 174 (397)
.+.+|.|+..+-
T Consensus 84 ~~~~d~li~~ag 95 (276)
T PRK05875 84 HGRLHGVVHCAG 95 (276)
T ss_pred cCCCCEEEECCC
Confidence 146899998664
No 440
>PRK07454 short chain dehydrogenase; Provisional
Probab=72.32 E-value=79 Score=28.93 Aligned_cols=61 Identities=13% Similarity=0.042 Sum_probs=44.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccc
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRI 148 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~ 148 (397)
+..+|=.|+ +|+.+..++..+. .+.+|++++.++...+.+.+.++..+ .++.++.+|.++.
T Consensus 6 ~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~ 67 (241)
T PRK07454 6 MPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG-VKAAAYSIDLSNP 67 (241)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC-CcEEEEEccCCCH
Confidence 456777774 6888888887553 44589999999988877776666544 3577888998764
No 441
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=71.87 E-value=78 Score=29.38 Aligned_cols=86 Identities=12% Similarity=-0.021 Sum_probs=49.1
Q ss_pred CCeEEEEcCCC-ChHHHHHHHHcC-CCcEEEEEeCC------------HHHHHHHHHHHHHhCCCcEEEEEccccccccc
Q psy17793 86 GQKVLDMCAAP-GNKLTHIALLMN-DTGTLIALDKS------------KPRVTKLEETIKKLQLSSIQTHVYDSTRINTS 151 (397)
Q Consensus 86 g~~VLDlcagp-G~kt~~lA~~~~-~~~~V~avD~s------------~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~ 151 (397)
+..||=.|++. |+.+.+++..+. .+..|+.++.+ +.... +...++..+ .++.++..|..+...-
T Consensus 5 ~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~D~~~~~~~ 82 (256)
T PRK12748 5 KKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVL-LKEEIESYG-VRCEHMEIDLSQPYAP 82 (256)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHH-HHHHHHhcC-CeEEEEECCCCCHHHH
Confidence 56788888774 688888887653 34588888776 22222 444444444 2478888888764210
Q ss_pred chhhHHHhhhcccCccEEEEcCC
Q psy17793 152 SQIDIERMKLQKESFDRILLDAP 174 (397)
Q Consensus 152 ~~~d~~~~~~~~~~fD~Il~DpP 174 (397)
..-.....-.-+.+|.|+..+-
T Consensus 83 -~~~~~~~~~~~g~id~vi~~ag 104 (256)
T PRK12748 83 -NRVFYAVSERLGDPSILINNAA 104 (256)
T ss_pred -HHHHHHHHHhCCCCCEEEECCC
Confidence 0000000011246899988653
No 442
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=71.85 E-value=44 Score=33.15 Aligned_cols=49 Identities=18% Similarity=0.222 Sum_probs=33.4
Q ss_pred cCCCCCCeEEEEcCCCChHH---HHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy17793 81 LDVQPGQKVLDMCAAPGNKL---THIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS 136 (397)
Q Consensus 81 L~~~~g~~VLDlcagpG~kt---~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~ 136 (397)
..+++|++||=.|+ |..+ +++|..+ +..+|+++|.++++.+.+ +++|..
T Consensus 183 ~~~~~g~~VlV~G~--g~vG~~a~q~ak~~-G~~~vi~~~~~~~~~~~~----~~~Ga~ 234 (369)
T cd08301 183 AKVKKGSTVAIFGL--GAVGLAVAEGARIR-GASRIIGVDLNPSKFEQA----KKFGVT 234 (369)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHH----HHcCCc
Confidence 45678999988764 5554 4455543 223799999999988766 446764
No 443
>PRK05854 short chain dehydrogenase; Provisional
Probab=71.80 E-value=90 Score=30.38 Aligned_cols=86 Identities=9% Similarity=0.134 Sum_probs=53.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEEcccccccccchhhH-HHhhhc
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQ-LSSIQTHVYDSTRINTSSQIDI-ERMKLQ 162 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g-~~~v~~~~~D~~~~~~~~~~d~-~~~~~~ 162 (397)
|..+|=.|+ +|+.+.++|..+ ..+.+|+.+..+..+.+.+.+.+.... -.++.++..|..+...- ... ......
T Consensus 14 gk~~lITGa-s~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv--~~~~~~~~~~ 90 (313)
T PRK05854 14 GKRAVVTGA-SDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASV--AALGEQLRAE 90 (313)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHH--HHHHHHHHHh
Confidence 566775555 567777777654 345689999999988887776665442 23578888898765210 000 000111
Q ss_pred ccCccEEEEcCC
Q psy17793 163 KESFDRILLDAP 174 (397)
Q Consensus 163 ~~~fD~Il~DpP 174 (397)
.+..|.++.++-
T Consensus 91 ~~~iD~li~nAG 102 (313)
T PRK05854 91 GRPIHLLINNAG 102 (313)
T ss_pred CCCccEEEECCc
Confidence 256899998763
No 444
>PRK05993 short chain dehydrogenase; Provisional
Probab=71.80 E-value=60 Score=30.75 Aligned_cols=78 Identities=13% Similarity=0.146 Sum_probs=47.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HH-hhhc
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ER-MKLQ 162 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~-~~~~ 162 (397)
+..||=.|+ +|+.+.++|..+ ..+.+|++++.++..++.+.+ . .+.++..|.++...- ... .. ....
T Consensus 4 ~k~vlItGa-sggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~----~---~~~~~~~Dl~d~~~~--~~~~~~~~~~~ 73 (277)
T PRK05993 4 KRSILITGC-SSGIGAYCARALQSDGWRVFATCRKEEDVAALEA----E---GLEAFQLDYAEPESI--AALVAQVLELS 73 (277)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----C---CceEEEccCCCHHHH--HHHHHHHHHHc
Confidence 456776665 688888888755 345689999999887765542 2 356677787654200 000 00 0011
Q ss_pred ccCccEEEEcC
Q psy17793 163 KESFDRILLDA 173 (397)
Q Consensus 163 ~~~fD~Il~Dp 173 (397)
.+..|.|+.++
T Consensus 74 ~g~id~li~~A 84 (277)
T PRK05993 74 GGRLDALFNNG 84 (277)
T ss_pred CCCccEEEECC
Confidence 24689999865
No 445
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=71.59 E-value=26 Score=35.83 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=23.1
Q ss_pred CCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHH
Q psy17793 95 APGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEE 128 (397)
Q Consensus 95 gpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~ 128 (397)
|.|..+..+|..+. .+-.|+++|+++.+++.+++
T Consensus 7 GlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~ 41 (411)
T TIGR03026 7 GLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNK 41 (411)
T ss_pred CCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhc
Confidence 45555555555442 34589999999999887653
No 446
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=71.42 E-value=10 Score=31.26 Aligned_cols=69 Identities=14% Similarity=0.206 Sum_probs=37.8
Q ss_pred CccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC-CC-cc
Q psy17793 165 SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS-LS-VE 242 (397)
Q Consensus 165 ~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS-~~-~e 242 (397)
+||+|+-|||+.............. . -.++=.-.++. +.++| +|.+.|.|=+ +. ..
T Consensus 2 kFD~VIGNPPY~~~~~~~~~~~~~~-----~----~~dlY~~Fie~-----------~~~ll--~G~~~~I~P~~~l~~~ 59 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKKKKKKK-----K----KSDLYILFIEK-----------SLNLL--NGYLSFITPNSFLKSG 59 (106)
T ss_pred CcCEEEECCCChhhccccchhhccc-----c----cCcHHHHHHHH-----------HHHHh--CCeEEEEeChHHhCcC
Confidence 5999999999866542111110000 0 11121345555 78888 8999887644 44 44
Q ss_pred ccHHHHHHHHHHC
Q psy17793 243 ENEAVIAWILHRH 255 (397)
Q Consensus 243 EnE~vV~~~L~~~ 255 (397)
+.-...+.++-+.
T Consensus 60 ~~~~~lR~~l~~~ 72 (106)
T PF07669_consen 60 KYGKKLRKFLLNN 72 (106)
T ss_pred chHHHHHHHHhcC
Confidence 4444555555443
No 447
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=71.24 E-value=9.7 Score=31.08 Aligned_cols=67 Identities=19% Similarity=0.245 Sum_probs=45.1
Q ss_pred CCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccCccEEEEc
Q psy17793 94 AAPGNKLTHIALLMNDTG-TLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLD 172 (397)
Q Consensus 94 agpG~kt~~lA~~~~~~~-~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~D 172 (397)
+|.|..+..+++.+...+ .|+.+|.++++++.+++. | +.++.+|.++...- ....-...|.|++.
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----~---~~~i~gd~~~~~~l-------~~a~i~~a~~vv~~ 69 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----G---VEVIYGDATDPEVL-------ERAGIEKADAVVIL 69 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----T---SEEEES-TTSHHHH-------HHTTGGCESEEEEE
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----c---cccccccchhhhHH-------hhcCccccCEEEEc
Confidence 577888888888775566 899999999998777643 3 56888998765211 11123568888874
Q ss_pred CC
Q psy17793 173 AP 174 (397)
Q Consensus 173 pP 174 (397)
-+
T Consensus 70 ~~ 71 (116)
T PF02254_consen 70 TD 71 (116)
T ss_dssp SS
T ss_pred cC
Confidence 43
No 448
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=71.20 E-value=11 Score=37.99 Aligned_cols=57 Identities=16% Similarity=0.154 Sum_probs=42.9
Q ss_pred HHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793 77 AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS 137 (397)
Q Consensus 77 ~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~ 137 (397)
+...+++++|+.|.=.|+|-=|.+.-..+.+.+.++|+|+|+++.+++.++ ++|...
T Consensus 177 v~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~----~fGAT~ 233 (366)
T COG1062 177 VVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAK----KFGATH 233 (366)
T ss_pred hhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHH----hcCCce
Confidence 345677899999998888765555545555557889999999999998875 567754
No 449
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=71.19 E-value=67 Score=31.08 Aligned_cols=80 Identities=14% Similarity=0.092 Sum_probs=47.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEEcccccccccchhhHHHhhhc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQL-SSIQTHVYDSTRINTSSQIDIERMKLQ 162 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~-~~v~~~~~D~~~~~~~~~~d~~~~~~~ 162 (397)
.+.+||=.| |+|..+.+++..+. .+..|+++..++...+.........+. .+++++.+|.++... . ...+
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~-----~-~~~~- 75 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGS-----F-ELAI- 75 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchH-----H-HHHH-
Confidence 366788776 67889999887553 445787777776554433322222232 357888888876421 0 0112
Q ss_pred ccCccEEEEcC
Q psy17793 163 KESFDRILLDA 173 (397)
Q Consensus 163 ~~~fD~Il~Dp 173 (397)
..+|.|+..+
T Consensus 76 -~~~d~vih~A 85 (325)
T PLN02989 76 -DGCETVFHTA 85 (325)
T ss_pred -cCCCEEEEeC
Confidence 2579998855
No 450
>KOG0919|consensus
Probab=70.75 E-value=3.8 Score=39.17 Aligned_cols=88 Identities=14% Similarity=0.198 Sum_probs=48.2
Q ss_pred CeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccCc
Q psy17793 87 QKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESF 166 (397)
Q Consensus 87 ~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~f 166 (397)
-+||++-+|-|+.--.+-..--++--|.|+|++..+-+.-..|- +-.-+.. .|...+. ...|..-.+
T Consensus 4 LrVlelysg~ggmhyal~~a~ipaqiVaAiDvNtvANevY~~N~---h~~L~k~--~~I~~lt--------~kefd~l~~ 70 (338)
T KOG0919|consen 4 LRVLELYSGHGGMHYALEDAQIPAQIVAAIDVNTVANEVYAHNY---HSNLVKT--RNIQSLT--------VKEFDKLQA 70 (338)
T ss_pred eehhhhhhccchhhhhHhhhcCchhhEEEEecchhHHHHHhcCc---ccchhhc--cccceee--------Hhhhhhccc
Confidence 37899999999865433332224456889999998766655441 1000110 1111110 011233468
Q ss_pred cEEEEcCCCCCC---CCCcccccc
Q psy17793 167 DRILLDAPCSGF---GQRPMFYNA 187 (397)
Q Consensus 167 D~Il~DpPCSg~---G~~p~~~~~ 187 (397)
|.+++-|||--. |.+.++...
T Consensus 71 ~m~lMSPpCQPfTRiG~q~D~~D~ 94 (338)
T KOG0919|consen 71 NMLLMSPPCQPFTRIGLQRDTEDK 94 (338)
T ss_pred ceEeeCCCCCchhhhcccccccCc
Confidence 999999999653 444444333
No 451
>PRK08628 short chain dehydrogenase; Provisional
Probab=70.40 E-value=91 Score=28.85 Aligned_cols=84 Identities=17% Similarity=0.157 Sum_probs=49.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhcc
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQK 163 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~~ 163 (397)
|..+|=.|+ +|+.+.++|..+ ..+..|+.++.++... .+.+.+...+. ++.++..|..+...- ... .......
T Consensus 7 ~~~ilItGa-sggiG~~la~~l~~~G~~v~~~~r~~~~~-~~~~~~~~~~~-~~~~~~~D~~~~~~~--~~~~~~~~~~~ 81 (258)
T PRK08628 7 DKVVIVTGG-ASGIGAAISLRLAEEGAIPVIFGRSAPDD-EFAEELRALQP-RAEFVQVDLTDDAQC--RDAVEQTVAKF 81 (258)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHcCCcEEEEcCChhhH-HHHHHHHhcCC-ceEEEEccCCCHHHH--HHHHHHHHHhc
Confidence 556776665 577788777654 3455788888888776 34444454453 577888888754210 000 0000011
Q ss_pred cCccEEEEcCC
Q psy17793 164 ESFDRILLDAP 174 (397)
Q Consensus 164 ~~fD~Il~DpP 174 (397)
+.+|.|+..+.
T Consensus 82 ~~id~vi~~ag 92 (258)
T PRK08628 82 GRIDGLVNNAG 92 (258)
T ss_pred CCCCEEEECCc
Confidence 46899998654
No 452
>KOG1201|consensus
Probab=70.08 E-value=25 Score=34.67 Aligned_cols=85 Identities=19% Similarity=0.169 Sum_probs=57.3
Q ss_pred CCCeEEEEcCCCChHHHHHHH-HcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIAL-LMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK 163 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~-~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~ 163 (397)
.|+.||=-|+|.|. +-.+|. ....+.+++..|++++-.+...+.+++.| .+..+..|..+...- ..-...-+..-
T Consensus 37 ~g~~vLITGgg~Gl-Gr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g--~~~~y~cdis~~eei-~~~a~~Vk~e~ 112 (300)
T KOG1201|consen 37 SGEIVLITGGGSGL-GRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG--EAKAYTCDISDREEI-YRLAKKVKKEV 112 (300)
T ss_pred cCCEEEEeCCCchH-HHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC--ceeEEEecCCCHHHH-HHHHHHHHHhc
Confidence 48899999999884 333332 22235678899999999999999999887 688888888765210 00011112234
Q ss_pred cCccEEEEcC
Q psy17793 164 ESFDRILLDA 173 (397)
Q Consensus 164 ~~fD~Il~Dp 173 (397)
+.+|+++-||
T Consensus 113 G~V~ILVNNA 122 (300)
T KOG1201|consen 113 GDVDILVNNA 122 (300)
T ss_pred CCceEEEecc
Confidence 6789998876
No 453
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=70.01 E-value=91 Score=28.68 Aligned_cols=84 Identities=12% Similarity=0.070 Sum_probs=51.4
Q ss_pred EEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhcccCc
Q psy17793 89 VLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQKESF 166 (397)
Q Consensus 89 VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~~~~f 166 (397)
+|=.| |+|+.+.+++..+ ..+.+|+.++.++.+++.+.+.+...+ .++.++..|..+...- .+. .......+..
T Consensus 3 ~lItG-~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~i--~~~~~~~~~~~~~i 78 (254)
T TIGR02415 3 ALVTG-GAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAG-GKAVAYKLDVSDKDQV--FSAIDQAAEKFGGF 78 (254)
T ss_pred EEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEEcCCCCHHHH--HHHHHHHHHHcCCC
Confidence 44445 5677888777654 345689999999888877766666655 3577888888654200 000 0000112468
Q ss_pred cEEEEcCCCC
Q psy17793 167 DRILLDAPCS 176 (397)
Q Consensus 167 D~Il~DpPCS 176 (397)
|.|+.++...
T Consensus 79 d~vi~~ag~~ 88 (254)
T TIGR02415 79 DVMVNNAGVA 88 (254)
T ss_pred CEEEECCCcC
Confidence 9999877543
No 454
>PRK12743 oxidoreductase; Provisional
Probab=69.38 E-value=97 Score=28.77 Aligned_cols=84 Identities=11% Similarity=0.051 Sum_probs=50.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEe-CCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhhc
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLMN-DTGTLIALD-KSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKLQ 162 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD-~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~~ 162 (397)
+++||=.|+ +|+.+.+++..+. .+.+|+.++ .+....+.+.+.++..+ .++.++..|..+...-. ..+.... .
T Consensus 2 ~k~vlItGa-s~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~--~ 77 (256)
T PRK12743 2 AQVAIVTAS-DSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHG-VRAEIRQLDLSDLPEGAQALDKLIQ--R 77 (256)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcC-CceEEEEccCCCHHHHHHHHHHHHH--H
Confidence 346777775 5677888887553 345776664 46667777777777666 35778888887642100 0000001 1
Q ss_pred ccCccEEEEcC
Q psy17793 163 KESFDRILLDA 173 (397)
Q Consensus 163 ~~~fD~Il~Dp 173 (397)
-+..|.|+..+
T Consensus 78 ~~~id~li~~a 88 (256)
T PRK12743 78 LGRIDVLVNNA 88 (256)
T ss_pred cCCCCEEEECC
Confidence 24689999855
No 455
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=69.28 E-value=39 Score=32.83 Aligned_cols=49 Identities=18% Similarity=0.228 Sum_probs=31.2
Q ss_pred CCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy17793 83 VQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS 136 (397)
Q Consensus 83 ~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~ 136 (397)
..+|++||-.++|. |..+.++|..++ ..+|++++.++++.+.++ ++|.+
T Consensus 163 ~~~~~~VLI~g~g~vG~~~~~lak~~G-~~~v~~~~~s~~~~~~~~----~~g~~ 212 (339)
T cd08232 163 DLAGKRVLVTGAGPIGALVVAAARRAG-AAEIVATDLADAPLAVAR----AMGAD 212 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHH----HcCCC
Confidence 34788998866543 445556666542 227899999888876543 35653
No 456
>PRK06196 oxidoreductase; Provisional
Probab=68.82 E-value=1e+02 Score=29.83 Aligned_cols=83 Identities=10% Similarity=0.082 Sum_probs=51.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQ 162 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~ 162 (397)
.+.+||=.| |+|+.+.+++..+. .+.+|++++.++.+.+.+.+.+. ++.++.+|..+...- ... ......
T Consensus 25 ~~k~vlITG-asggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~-----~v~~~~~Dl~d~~~v--~~~~~~~~~~ 96 (315)
T PRK06196 25 SGKTAIVTG-GYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGID-----GVEVVMLDLADLESV--RAFAERFLDS 96 (315)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh-----hCeEEEccCCCHHHH--HHHHHHHHhc
Confidence 356777667 55778888887553 45689999999887766554443 366778888765210 000 000011
Q ss_pred ccCccEEEEcCCC
Q psy17793 163 KESFDRILLDAPC 175 (397)
Q Consensus 163 ~~~fD~Il~DpPC 175 (397)
.+..|.|+.++..
T Consensus 97 ~~~iD~li~nAg~ 109 (315)
T PRK06196 97 GRRIDILINNAGV 109 (315)
T ss_pred CCCCCEEEECCCC
Confidence 2568999997753
No 457
>PRK13794 hypothetical protein; Provisional
Probab=68.72 E-value=3.5 Score=43.41 Aligned_cols=33 Identities=24% Similarity=0.328 Sum_probs=29.5
Q ss_pred CeEEEechhhhhhhh-cccceecccccccCCCCC
Q psy17793 345 PVQIIVDQPCALAVL-RGADVFAPGVLAMPLGKN 377 (397)
Q Consensus 345 ~~~v~vd~~c~~a~L-rGa~v~~pg~~~~~~~~~ 377 (397)
...|.||..++.+++ +|++||+|||+++..++.
T Consensus 124 ~~~V~Vd~ga~~~v~~~G~~v~~~GV~~~~~~i~ 157 (479)
T PRK13794 124 KKFIVVKDDVPKFIRNKGASVLRPGVAEASEDIE 157 (479)
T ss_pred CcEEEECccHHHHHHhCCCeecCCceEEecCCcC
Confidence 458999999999999 999999999999987763
No 458
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=68.45 E-value=25 Score=36.38 Aligned_cols=47 Identities=9% Similarity=-0.104 Sum_probs=33.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC
Q psy17793 84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL 135 (397)
Q Consensus 84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~ 135 (397)
.+|++|+=+|+|+=|..+...... -+.+|+++|.++.|++.+++ .|+
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~-~Ga~ViV~d~d~~R~~~A~~----~G~ 246 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRG-QGARVIVTEVDPICALQAAM----EGY 246 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-CCCEEEEEECChhhHHHHHh----cCC
Confidence 479999999999855554433322 23589999999999776653 565
No 459
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=68.45 E-value=28 Score=34.68 Aligned_cols=51 Identities=24% Similarity=0.305 Sum_probs=33.3
Q ss_pred cCCCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy17793 81 LDVQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS 136 (397)
Q Consensus 81 L~~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~ 136 (397)
..+++|++||=.|+|. |..+.++|...+ ...|+++|.++.+.+.++ .+|.+
T Consensus 182 ~~~~~g~~vlI~g~g~vG~~~~~la~~~G-~~~v~~~~~~~~k~~~~~----~~g~~ 233 (365)
T cd08278 182 LKPRPGSSIAVFGAGAVGLAAVMAAKIAG-CTTIIAVDIVDSRLELAK----ELGAT 233 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHH----HcCCc
Confidence 3457788888876532 444555666543 336999999998877654 35653
No 460
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=68.39 E-value=1.1e+02 Score=28.97 Aligned_cols=86 Identities=16% Similarity=0.057 Sum_probs=46.9
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhh
Q psy17793 85 PGQKVLDMCAAP-GNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKL 161 (397)
Q Consensus 85 ~g~~VLDlcagp-G~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~ 161 (397)
.|..+|=.|++. +|.+..+|..+. .+..|+.++.+....+.+++..... ..+.++..|..+...-. ..+....
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~-- 80 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQL--GSDIVLPCDVAEDASIDAMFAELGK-- 80 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhcc--CCceEeecCCCCHHHHHHHHHHHHh--
Confidence 367888889887 387777776553 4557887787632222232222222 23556778886542100 0000001
Q ss_pred cccCccEEEEcCC
Q psy17793 162 QKESFDRILLDAP 174 (397)
Q Consensus 162 ~~~~fD~Il~DpP 174 (397)
.-+++|.++.++-
T Consensus 81 ~~g~iD~linnAg 93 (262)
T PRK07984 81 VWPKFDGFVHSIG 93 (262)
T ss_pred hcCCCCEEEECCc
Confidence 1256899999774
No 461
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=68.38 E-value=32 Score=29.39 Aligned_cols=77 Identities=16% Similarity=0.177 Sum_probs=46.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793 84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK 163 (397)
Q Consensus 84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~ 163 (397)
-.+.+||=+|||-=+.+...+-.-.+..+|+-+..+.++.+.+.+.+ +-.++.+...+-... ..
T Consensus 10 l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~---~~~~~~~~~~~~~~~-------------~~ 73 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF---GGVNIEAIPLEDLEE-------------AL 73 (135)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH---TGCSEEEEEGGGHCH-------------HH
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc---CccccceeeHHHHHH-------------HH
Confidence 35789999998644443322222234567999999999888776665 334455554432221 12
Q ss_pred cCccEEEEcCCCCCCC
Q psy17793 164 ESFDRILLDAPCSGFG 179 (397)
Q Consensus 164 ~~fD~Il~DpPCSg~G 179 (397)
..+|+|+. |++.|
T Consensus 74 ~~~DivI~---aT~~~ 86 (135)
T PF01488_consen 74 QEADIVIN---ATPSG 86 (135)
T ss_dssp HTESEEEE----SSTT
T ss_pred hhCCeEEE---ecCCC
Confidence 46899997 55555
No 462
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=68.19 E-value=1e+02 Score=29.91 Aligned_cols=85 Identities=14% Similarity=0.086 Sum_probs=50.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCC-HHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhh
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKS-KPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKL 161 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s-~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~ 161 (397)
.|..+|=.|++ |+.+.++|..+ ..+.+|+.+|.+ ....+.+.+.++..| .++.++..|..+...-. ..+.. ..
T Consensus 11 ~~k~~lVTGas-~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g-~~~~~~~~Dv~d~~~~~~~~~~~-~~- 86 (306)
T PRK07792 11 SGKVAVVTGAA-AGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAG-AKAVAVAGDISQRATADELVATA-VG- 86 (306)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcC-CeEEEEeCCCCCHHHHHHHHHHH-HH-
Confidence 35677755555 66777777654 345688888874 445556656565555 35777888887642100 00000 11
Q ss_pred cccCccEEEEcCC
Q psy17793 162 QKESFDRILLDAP 174 (397)
Q Consensus 162 ~~~~fD~Il~DpP 174 (397)
-+++|.++.++-
T Consensus 87 -~g~iD~li~nAG 98 (306)
T PRK07792 87 -LGGLDIVVNNAG 98 (306)
T ss_pred -hCCCCEEEECCC
Confidence 257899998664
No 463
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=68.15 E-value=37 Score=33.18 Aligned_cols=53 Identities=25% Similarity=0.328 Sum_probs=33.3
Q ss_pred ccCCCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793 80 YLDVQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS 137 (397)
Q Consensus 80 ~L~~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~ 137 (397)
....++|++||-.++|. |..+.++|..++ ...|++++.++++.+.+++ +|.+.
T Consensus 157 ~~~~~~g~~vlI~g~g~vG~~a~~lak~~G-~~~v~~~~~~~~~~~~~~~----~g~~~ 210 (343)
T cd05285 157 RAGVRPGDTVLVFGAGPIGLLTAAVAKAFG-ATKVVVTDIDPSRLEFAKE----LGATH 210 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----cCCcE
Confidence 44567899988865433 444555666542 2238899888888766644 46544
No 464
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=68.13 E-value=1e+02 Score=28.54 Aligned_cols=82 Identities=16% Similarity=0.064 Sum_probs=49.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhcc
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQK 163 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~~ 163 (397)
+..+|=.| |+|+.+.+++..+. .+.+|+.+|.+....+.+.+.+ + .++.++..|..+...- ... ....-..
T Consensus 6 ~~~vlItG-as~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~~~~~--~~~~~~~~~~~ 78 (257)
T PRK07067 6 GKVALLTG-AASGIGEAVAERYLAEGARVVIADIKPARARLAALEI---G-PAAIAVSLDVTRQDSI--DRIVAAAVERF 78 (257)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh---C-CceEEEEccCCCHHHH--HHHHHHHHHHc
Confidence 45677555 66778888887653 4568999999988877665433 2 3477788888654210 000 0000011
Q ss_pred cCccEEEEcCC
Q psy17793 164 ESFDRILLDAP 174 (397)
Q Consensus 164 ~~fD~Il~DpP 174 (397)
+..|.++..+.
T Consensus 79 ~~id~li~~ag 89 (257)
T PRK07067 79 GGIDILFNNAA 89 (257)
T ss_pred CCCCEEEECCC
Confidence 46899988554
No 465
>PRK13795 hypothetical protein; Provisional
Probab=67.93 E-value=3.6 Score=44.82 Aligned_cols=34 Identities=29% Similarity=0.426 Sum_probs=30.4
Q ss_pred CCeEEEechhhhhhhhcccceecccccccCCCCC
Q psy17793 344 HPVQIIVDQPCALAVLRGADVFAPGVLAMPLGKN 377 (397)
Q Consensus 344 ~~~~v~vd~~c~~a~LrGa~v~~pg~~~~~~~~~ 377 (397)
....|+||.....++.+|++|++|||+++...+.
T Consensus 125 ~~~~VvVd~ga~~~v~~Ga~l~~~GI~~~~~~i~ 158 (636)
T PRK13795 125 LKKWVIVDKGALEPIKNGKNVLAPGVVEADLDIK 158 (636)
T ss_pred CCcEEEEcccHHHHHHcCCcccCCceEEEeCCCC
Confidence 4578999999999999999999999999987764
No 466
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=67.88 E-value=40 Score=36.38 Aligned_cols=83 Identities=16% Similarity=0.121 Sum_probs=55.2
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCC--------CcEEEEEccccccccc
Q psy17793 81 LDVQPGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQL--------SSIQTHVYDSTRINTS 151 (397)
Q Consensus 81 L~~~~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~--------~~v~~~~~D~~~~~~~ 151 (397)
++.+.|..||=.|+ +|+.+.+++..+ ..+.+|++++.+..+++.+.+.+..+++ .++.++.+|+.+..
T Consensus 75 ~~~~~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~e-- 151 (576)
T PLN03209 75 LDTKDEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPD-- 151 (576)
T ss_pred cccCCCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHH--
Confidence 34456777776665 588888888655 4456899999999988777666554321 24788889987642
Q ss_pred chhhHHHhhhcccCccEEEEc
Q psy17793 152 SQIDIERMKLQKESFDRILLD 172 (397)
Q Consensus 152 ~~~d~~~~~~~~~~fD~Il~D 172 (397)
+. ...+ +..|+|+..
T Consensus 152 ---sI-~~aL--ggiDiVVn~ 166 (576)
T PLN03209 152 ---QI-GPAL--GNASVVICC 166 (576)
T ss_pred ---HH-HHHh--cCCCEEEEc
Confidence 10 0112 468999874
No 467
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=67.61 E-value=13 Score=35.65 Aligned_cols=49 Identities=20% Similarity=0.184 Sum_probs=39.8
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC
Q psy17793 83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ 134 (397)
Q Consensus 83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g 134 (397)
-.+|+.|||-.+|+|....+ |..+ +-..+++|+++.-++.+.+++.+.-
T Consensus 220 s~~~diVlDpf~GsGtt~~a-a~~~--~r~~ig~e~~~~y~~~~~~r~~~~~ 268 (302)
T COG0863 220 SFPGDIVLDPFAGSGTTGIA-AKNL--GRRFIGIEINPEYVEVALKRLQEGL 268 (302)
T ss_pred CCCCCEEeecCCCCChHHHH-HHHc--CCceEEEecCHHHHHHHHHHHHhhc
Confidence 46899999999999987754 3333 3468899999999999999988764
No 468
>PRK08278 short chain dehydrogenase; Provisional
Probab=67.23 E-value=91 Score=29.45 Aligned_cols=87 Identities=15% Similarity=0.075 Sum_probs=49.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHH-------HHHHHHHHHHhCCCcEEEEEcccccccccchhhH
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPR-------VTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI 156 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~r-------l~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~ 156 (397)
.+..+|=.|+ +|+.+.++|..+ ..+..|++++.+... ++.+.+.++..+. ++.++..|.++...- ...
T Consensus 5 ~~k~vlItGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~D~~~~~~i--~~~ 80 (273)
T PRK08278 5 SGKTLFITGA-SRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGG-QALPLVGDVRDEDQV--AAA 80 (273)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCC-ceEEEEecCCCHHHH--HHH
Confidence 3556775555 677888888755 345689888886542 3344444444443 577888888764210 000
Q ss_pred -HHhhhcccCccEEEEcCCC
Q psy17793 157 -ERMKLQKESFDRILLDAPC 175 (397)
Q Consensus 157 -~~~~~~~~~fD~Il~DpPC 175 (397)
......-+.+|.|+.++..
T Consensus 81 ~~~~~~~~g~id~li~~ag~ 100 (273)
T PRK08278 81 VAKAVERFGGIDICVNNASA 100 (273)
T ss_pred HHHHHHHhCCCCEEEECCCC
Confidence 0000011478999997753
No 469
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=67.15 E-value=49 Score=32.86 Aligned_cols=51 Identities=25% Similarity=0.373 Sum_probs=33.5
Q ss_pred cCCCCCCeEEEEcCCC--ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793 81 LDVQPGQKVLDMCAAP--GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS 137 (397)
Q Consensus 81 L~~~~g~~VLDlcagp--G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~ 137 (397)
...++|++||=.|++. |..+++||+.++. .++++-.+++..+ .++++|.+.
T Consensus 138 ~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~--~~v~~~~s~~k~~----~~~~lGAd~ 190 (326)
T COG0604 138 AGLKPGETVLVHGAAGGVGSAAIQLAKALGA--TVVAVVSSSEKLE----LLKELGADH 190 (326)
T ss_pred cCCCCCCEEEEecCCchHHHHHHHHHHHcCC--cEEEEecCHHHHH----HHHhcCCCE
Confidence 3467899999887544 5677788887532 5666656665544 456678765
No 470
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=67.05 E-value=62 Score=30.37 Aligned_cols=87 Identities=15% Similarity=0.010 Sum_probs=47.2
Q ss_pred CCCeEEEEcCC-CChHHHHHHHHcC-CCcEEEEEeCCHH--HHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHh
Q psy17793 85 PGQKVLDMCAA-PGNKLTHIALLMN-DTGTLIALDKSKP--RVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERM 159 (397)
Q Consensus 85 ~g~~VLDlcag-pG~kt~~lA~~~~-~~~~V~avD~s~~--rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~ 159 (397)
.|..+|=.|++ +++.+..+|..+. .+.+|+..+.+.+ +.+...+.++..+ ..+.++..|..+...- ... ...
T Consensus 5 ~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~d~~~v--~~~~~~~ 81 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPL-NPSLFLPCDVQDDAQI--EETFETI 81 (258)
T ss_pred CCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhcc-CcceEeecCcCCHHHH--HHHHHHH
Confidence 36788888985 6888888887653 3456766654332 3332222233222 2355677888654210 000 000
Q ss_pred hhcccCccEEEEcCC
Q psy17793 160 KLQKESFDRILLDAP 174 (397)
Q Consensus 160 ~~~~~~fD~Il~DpP 174 (397)
...-+.+|.++.++-
T Consensus 82 ~~~~g~iD~lv~nag 96 (258)
T PRK07370 82 KQKWGKLDILVHCLA 96 (258)
T ss_pred HHHcCCCCEEEEccc
Confidence 011257999998764
No 471
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=66.95 E-value=52 Score=30.12 Aligned_cols=86 Identities=7% Similarity=0.041 Sum_probs=54.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQ 162 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~ 162 (397)
++.++|=.|+ .|+.+..++..+ ..+.+|+.+|.++.+++.+.+.++..+. ++.++..|..+...- .+. ......
T Consensus 4 ~~~~~lItG~-~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~--~~~~~~~~~~ 79 (253)
T PRK08217 4 KDKVIVITGG-AQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGT-EVRGYAANVTDEEDV--EATFAQIAED 79 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHH--HHHHHHHHHH
Confidence 3678887775 577777777644 3456899999999888877777766553 567788887653200 000 000001
Q ss_pred ccCccEEEEcCC
Q psy17793 163 KESFDRILLDAP 174 (397)
Q Consensus 163 ~~~fD~Il~DpP 174 (397)
.+.+|.|+..+-
T Consensus 80 ~~~id~vi~~ag 91 (253)
T PRK08217 80 FGQLNGLINNAG 91 (253)
T ss_pred cCCCCEEEECCC
Confidence 146899998664
No 472
>PRK08303 short chain dehydrogenase; Provisional
Probab=66.69 E-value=1.3e+02 Score=29.25 Aligned_cols=85 Identities=13% Similarity=0.038 Sum_probs=50.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCC----------HHHHHHHHHHHHHhCCCcEEEEEccccccccc-c
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKS----------KPRVTKLEETIKKLQLSSIQTHVYDSTRINTS-S 152 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s----------~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~-~ 152 (397)
.|..+|-.|++ +|.+..+|..+ ..+.+|+.++.+ +++++.+.+.++..|. .+.++..|..+...- .
T Consensus 7 ~~k~~lITGgs-~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~Dv~~~~~v~~ 84 (305)
T PRK08303 7 RGKVALVAGAT-RGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGG-RGIAVQVDHLVPEQVRA 84 (305)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHH
Confidence 36778888865 55677777654 345688888876 3456666666666553 466778888764210 0
Q ss_pred hhhHHHhhhcccCccEEEEcC
Q psy17793 153 QIDIERMKLQKESFDRILLDA 173 (397)
Q Consensus 153 ~~d~~~~~~~~~~fD~Il~Dp 173 (397)
..+.....+ +..|.++.++
T Consensus 85 ~~~~~~~~~--g~iDilVnnA 103 (305)
T PRK08303 85 LVERIDREQ--GRLDILVNDI 103 (305)
T ss_pred HHHHHHHHc--CCccEEEECC
Confidence 001111112 5789999876
No 473
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=66.07 E-value=6.4 Score=41.32 Aligned_cols=19 Identities=26% Similarity=0.279 Sum_probs=16.2
Q ss_pred CeEEEEcCCCChHHHHHHH
Q psy17793 87 QKVLDMCAAPGNKLTHIAL 105 (397)
Q Consensus 87 ~~VLDlcagpG~kt~~lA~ 105 (397)
..|+||-||-||+++.|..
T Consensus 367 RNVMDMnAg~GGFAAAL~~ 385 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALID 385 (506)
T ss_pred eeeeeecccccHHHHHhcc
Confidence 3899999999999976655
No 474
>KOG4058|consensus
Probab=66.01 E-value=12 Score=33.35 Aligned_cols=64 Identities=13% Similarity=0.052 Sum_probs=49.7
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccc
Q psy17793 83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRI 148 (397)
Q Consensus 83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~ 148 (397)
-.+..+.+|+|+|-|-.-++.|.. +.-.-+++|.++.-+...+-..-+.|+. ..++..-|..+.
T Consensus 70 ~n~~GklvDlGSGDGRiVlaaar~--g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~ 134 (199)
T KOG4058|consen 70 GNPKGKLVDLGSGDGRIVLAAARC--GLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKV 134 (199)
T ss_pred CCCCCcEEeccCCCceeehhhhhh--CCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhc
Confidence 345568999999999998776663 2345789999999999988888888875 467777777655
No 475
>PRK07060 short chain dehydrogenase; Provisional
Probab=65.85 E-value=1e+02 Score=28.09 Aligned_cols=81 Identities=15% Similarity=0.124 Sum_probs=46.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK 163 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~ 163 (397)
.+.++|=.| |+|+.+.+++..+. .+.+|+.++.+++.++.+.+ ..+ ..++..|..+.. +........
T Consensus 8 ~~~~~lItG-a~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~---~~~---~~~~~~D~~~~~-----~v~~~~~~~ 75 (245)
T PRK07060 8 SGKSVLVTG-ASSGIGRACAVALAQRGARVVAAARNAAALDRLAG---ETG---CEPLRLDVGDDA-----AIRAALAAA 75 (245)
T ss_pred CCCEEEEeC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---HhC---CeEEEecCCCHH-----HHHHHHHHh
Confidence 356777444 55777777776543 34589999998876654433 223 345667775431 000010112
Q ss_pred cCccEEEEcCCCCC
Q psy17793 164 ESFDRILLDAPCSG 177 (397)
Q Consensus 164 ~~fD~Il~DpPCSg 177 (397)
+.+|.|+..+..+.
T Consensus 76 ~~~d~vi~~ag~~~ 89 (245)
T PRK07060 76 GAFDGLVNCAGIAS 89 (245)
T ss_pred CCCCEEEECCCCCC
Confidence 46899998776543
No 476
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=64.98 E-value=97 Score=28.87 Aligned_cols=84 Identities=13% Similarity=0.087 Sum_probs=50.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhhc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKLQ 162 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~~ 162 (397)
.+..+|=.|+ +|+.+.+++..+ ..+..|+.++.++..++.+.+. .+ .++.++..|..+...-. ..+. ....
T Consensus 5 ~~k~vlVtGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~---~~-~~~~~~~~D~~~~~~~~~~~~~--~~~~ 77 (263)
T PRK06200 5 HGQVALITGG-GSGIGRALVERFLAEGARVAVLERSAEKLASLRQR---FG-DHVLVVEGDVTSYADNQRAVDQ--TVDA 77 (263)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---hC-CcceEEEccCCCHHHHHHHHHH--HHHh
Confidence 3567777775 466677777654 3456899999998877665443 22 34677788887542100 0000 0011
Q ss_pred ccCccEEEEcCCC
Q psy17793 163 KESFDRILLDAPC 175 (397)
Q Consensus 163 ~~~fD~Il~DpPC 175 (397)
.+.+|.++.++..
T Consensus 78 ~g~id~li~~ag~ 90 (263)
T PRK06200 78 FGKLDCFVGNAGI 90 (263)
T ss_pred cCCCCEEEECCCC
Confidence 2468999987653
No 477
>KOG2793|consensus
Probab=64.72 E-value=28 Score=33.40 Aligned_cols=56 Identities=20% Similarity=0.138 Sum_probs=35.3
Q ss_pred HHHhccCCC-CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC
Q psy17793 76 LAGHYLDVQ-PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ 134 (397)
Q Consensus 76 l~~~~L~~~-~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g 134 (397)
+.+..+.-+ ....||++|||+|--++.+|.. .+..|+--|. +..+..++.|..+++
T Consensus 76 ~~~~~~g~~~~~~~vlELGsGtglvG~~aa~~--~~~~v~ltD~-~~~~~~L~~~~~~~~ 132 (248)
T KOG2793|consen 76 LTATLIGFKTKYINVLELGSGTGLVGILAALL--LGAEVVLTDL-PKVVENLKFNRDKNN 132 (248)
T ss_pred hhhccccccccceeEEEecCCccHHHHHHHHH--hcceeccCCc-hhhHHHHHHhhhhhh
Confidence 333344333 3557999999999766655543 3566766665 667777777655544
No 478
>KOG0023|consensus
Probab=64.63 E-value=53 Score=32.94 Aligned_cols=51 Identities=20% Similarity=0.193 Sum_probs=37.2
Q ss_pred CCCCCeEEEEcC-CCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcE
Q psy17793 83 VQPGQKVLDMCA-APGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSI 138 (397)
Q Consensus 83 ~~~g~~VLDlca-gpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v 138 (397)
..||++|-=.|+ |-|..+.++|..|+ .+|+++|.+...-+. .++++|.+..
T Consensus 179 ~~pG~~vgI~GlGGLGh~aVq~AKAMG--~rV~vis~~~~kkee---a~~~LGAd~f 230 (360)
T KOG0023|consen 179 LGPGKWVGIVGLGGLGHMAVQYAKAMG--MRVTVISTSSKKKEE---AIKSLGADVF 230 (360)
T ss_pred CCCCcEEEEecCcccchHHHHHHHHhC--cEEEEEeCCchhHHH---HHHhcCccee
Confidence 458887766665 36889999999884 689999998744333 3567888763
No 479
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=64.59 E-value=1.2e+02 Score=27.89 Aligned_cols=85 Identities=13% Similarity=0.129 Sum_probs=50.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHcCC-CcEEEE-EeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhc
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLMND-TGTLIA-LDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQ 162 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~~~-~~~V~a-vD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~ 162 (397)
+.++|=.|+ +|+.+.+++..+.. +.+|+. .+.+....+.+.+.++..+ .++.++..|..+...- ... ....-.
T Consensus 4 ~~~vlItGa-~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~--~~~~~~~~~~ 79 (250)
T PRK08063 4 GKVALVTGS-SRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALG-RKALAVKANVGDVEKI--KEMFAQIDEE 79 (250)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC-CeEEEEEcCCCCHHHH--HHHHHHHHHH
Confidence 556776665 58888888876543 346655 4667777766666666555 3577788888654210 000 000001
Q ss_pred ccCccEEEEcCC
Q psy17793 163 KESFDRILLDAP 174 (397)
Q Consensus 163 ~~~fD~Il~DpP 174 (397)
.+..|.|+.++.
T Consensus 80 ~~~id~vi~~ag 91 (250)
T PRK08063 80 FGRLDVFVNNAA 91 (250)
T ss_pred cCCCCEEEECCC
Confidence 146899998764
No 480
>PRK09135 pteridine reductase; Provisional
Probab=64.57 E-value=1.1e+02 Score=27.77 Aligned_cols=88 Identities=10% Similarity=0.003 Sum_probs=52.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCC-HHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDKS-KPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ 162 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s-~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~ 162 (397)
.+..||=.|+ +|+.+.+++..+. .+.+|++++.+ ....+.+...+...+-.++.++..|.++...-.. -.....-.
T Consensus 5 ~~~~vlItGa-~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~-~~~~~~~~ 82 (249)
T PRK09135 5 SAKVALITGG-ARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPE-LVAACVAA 82 (249)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHH-HHHHHHHH
Confidence 3567888885 5788888887553 45689999875 4555555555555443457888888876421000 00000001
Q ss_pred ccCccEEEEcCC
Q psy17793 163 KESFDRILLDAP 174 (397)
Q Consensus 163 ~~~fD~Il~DpP 174 (397)
-+..|.|+..+.
T Consensus 83 ~~~~d~vi~~ag 94 (249)
T PRK09135 83 FGRLDALVNNAS 94 (249)
T ss_pred cCCCCEEEECCC
Confidence 135899998553
No 481
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=64.54 E-value=1.2e+02 Score=28.10 Aligned_cols=82 Identities=13% Similarity=0.142 Sum_probs=46.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhhcc
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKLQK 163 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~~~ 163 (397)
|..+|=.|+ +|+.+.+++..+. .+.+|+++|.+.. +.+.+.++..+ ..+..+..|..+...-. ..+.- .-..
T Consensus 10 ~k~~lItG~-~~gIG~a~a~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~--~~~~ 83 (253)
T PRK08993 10 GKVAVVTGC-DTGLGQGMALGLAEAGCDIVGINIVEP--TETIEQVTALG-RRFLSLTADLRKIDGIPALLERA--VAEF 83 (253)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEecCcch--HHHHHHHHhcC-CeEEEEECCCCCHHHHHHHHHHH--HHHh
Confidence 567776665 5777887887553 4568888887542 33334444444 24677788886532100 00000 0112
Q ss_pred cCccEEEEcC
Q psy17793 164 ESFDRILLDA 173 (397)
Q Consensus 164 ~~fD~Il~Dp 173 (397)
+..|.++.++
T Consensus 84 ~~~D~li~~A 93 (253)
T PRK08993 84 GHIDILVNNA 93 (253)
T ss_pred CCCCEEEECC
Confidence 4689998865
No 482
>PLN00015 protochlorophyllide reductase
Probab=64.48 E-value=78 Score=30.68 Aligned_cols=79 Identities=8% Similarity=0.078 Sum_probs=46.7
Q ss_pred cCCCChHHHHHHHHcCC-C-cEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhcccCccEE
Q psy17793 93 CAAPGNKLTHIALLMND-T-GTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQKESFDRI 169 (397)
Q Consensus 93 cagpG~kt~~lA~~~~~-~-~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~~~~fD~I 169 (397)
..|+++.+..++..+.. + .+|+.++.+....+.+.+.++..+ .++.++..|..+...- ... .......+..|.+
T Consensus 3 TGas~GIG~aia~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~d~~~v--~~~~~~~~~~~~~iD~l 79 (308)
T PLN00015 3 TGASSGLGLATAKALAETGKWHVVMACRDFLKAERAAKSAGMPK-DSYTVMHLDLASLDSV--RQFVDNFRRSGRPLDVL 79 (308)
T ss_pred eCCCChHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEEecCCCHHHH--HHHHHHHHhcCCCCCEE
Confidence 34677888888875533 3 578888988887766655443222 3467778888765210 000 0000112468999
Q ss_pred EEcCC
Q psy17793 170 LLDAP 174 (397)
Q Consensus 170 l~DpP 174 (397)
+.++-
T Consensus 80 InnAG 84 (308)
T PLN00015 80 VCNAA 84 (308)
T ss_pred EECCC
Confidence 99874
No 483
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=64.33 E-value=33 Score=34.23 Aligned_cols=49 Identities=14% Similarity=0.199 Sum_probs=29.6
Q ss_pred CCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy17793 83 VQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS 136 (397)
Q Consensus 83 ~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~ 136 (397)
.++|++||=.|+|+ |..++++|+.+ +.+|++++.+..+... .++++|.+
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~--Ga~vi~~~~~~~~~~~---~~~~~Ga~ 230 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAF--GLKVTVISSSSNKEDE---AINRLGAD 230 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCcchhhh---HHHhCCCc
Confidence 46789998876543 33445556654 3578888877655432 23456764
No 484
>PRK05866 short chain dehydrogenase; Provisional
Probab=64.32 E-value=1.4e+02 Score=28.73 Aligned_cols=84 Identities=12% Similarity=0.140 Sum_probs=53.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhcc
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQK 163 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~~ 163 (397)
+.+||=.|+ +|+.+.+++..+ ..+..|++++.+.+.++.+.+.+...+. .+.++..|..+...- ... ......-
T Consensus 40 ~k~vlItGa-sggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~-~~~~~~~Dl~d~~~v--~~~~~~~~~~~ 115 (293)
T PRK05866 40 GKRILLTGA-SSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGG-DAMAVPCDLSDLDAV--DALVADVEKRI 115 (293)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHH--HHHHHHHHHHc
Confidence 456776665 577788887654 3456899999999988888777766553 467778888754200 000 0000112
Q ss_pred cCccEEEEcC
Q psy17793 164 ESFDRILLDA 173 (397)
Q Consensus 164 ~~fD~Il~Dp 173 (397)
+..|.|+..+
T Consensus 116 g~id~li~~A 125 (293)
T PRK05866 116 GGVDILINNA 125 (293)
T ss_pred CCCCEEEECC
Confidence 4789999854
No 485
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=64.31 E-value=1.2e+02 Score=27.84 Aligned_cols=87 Identities=9% Similarity=-0.047 Sum_probs=46.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEe-CCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLMN-DTGTLIALD-KSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK 163 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD-~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~ 163 (397)
+.+||=.| |+|+.+.+++..+. .+..|+.+. .+........+.++..+. ++.++..|.+..... ..-.......-
T Consensus 6 ~~~vlitG-asg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~-~~~~~~~~~~~ 82 (252)
T PRK06077 6 DKVVVVTG-SGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGG-EGIGVLADVSTREGC-ETLAKATIDRY 82 (252)
T ss_pred CcEEEEeC-CCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCC-eeEEEEeccCCHHHH-HHHHHHHHHHc
Confidence 56788777 46777887877553 345565543 445555544455555543 456677787654210 00000000112
Q ss_pred cCccEEEEcCCC
Q psy17793 164 ESFDRILLDAPC 175 (397)
Q Consensus 164 ~~fD~Il~DpPC 175 (397)
+.+|.|+..+..
T Consensus 83 ~~~d~vi~~ag~ 94 (252)
T PRK06077 83 GVADILVNNAGL 94 (252)
T ss_pred CCCCEEEECCCC
Confidence 468999997654
No 486
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=63.60 E-value=92 Score=30.92 Aligned_cols=52 Identities=17% Similarity=0.231 Sum_probs=33.7
Q ss_pred cCCCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793 81 LDVQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS 137 (397)
Q Consensus 81 L~~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~ 137 (397)
..+++|++||=.|+|+ |..+.++|..+ +...|+++|.++++++.++ .+|.+.
T Consensus 182 ~~~~~g~~VlV~G~G~vG~~a~~~ak~~-G~~~vi~~~~~~~~~~~~~----~lGa~~ 234 (368)
T cd08300 182 AKVEPGSTVAVFGLGAVGLAVIQGAKAA-GASRIIGIDINPDKFELAK----KFGATD 234 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHH----HcCCCE
Confidence 4567899998886532 22334455544 2237999999999987664 467643
No 487
>PLN02780 ketoreductase/ oxidoreductase
Probab=63.47 E-value=1.6e+02 Score=28.98 Aligned_cols=61 Identities=15% Similarity=0.157 Sum_probs=43.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEEcccc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQ-LSSIQTHVYDST 146 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g-~~~v~~~~~D~~ 146 (397)
.|..+|=.|| +|+.+.++|..+ ..+..|+.++.++++++.+.+.++... -.++..+..|..
T Consensus 52 ~g~~~lITGA-s~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~ 114 (320)
T PLN02780 52 YGSWALVTGP-TDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFS 114 (320)
T ss_pred cCCEEEEeCC-CcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECC
Confidence 4678887775 566777777655 345589999999999988877776542 234666777775
No 488
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=63.15 E-value=1.3e+02 Score=29.59 Aligned_cols=81 Identities=12% Similarity=-0.010 Sum_probs=49.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhccc
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE 164 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~ 164 (397)
+.+||=.|+ +|..+.+++..+. .+.+|++++.+......+...+.. ..+++++.+|..+... . .... .
T Consensus 10 ~~~vLVtG~-~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~-----~--~~~~-~ 78 (353)
T PLN02896 10 TGTYCVTGA-TGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKE--GDRLRLFRADLQEEGS-----F--DEAV-K 78 (353)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhcc--CCeEEEEECCCCCHHH-----H--HHHH-c
Confidence 567887774 6999999988653 345899888776554443333221 2457888888875420 0 0111 3
Q ss_pred CccEEEEcCCCCC
Q psy17793 165 SFDRILLDAPCSG 177 (397)
Q Consensus 165 ~fD~Il~DpPCSg 177 (397)
.+|.|+--+..++
T Consensus 79 ~~d~Vih~A~~~~ 91 (353)
T PLN02896 79 GCDGVFHVAASME 91 (353)
T ss_pred CCCEEEECCcccc
Confidence 5899988665433
No 489
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=62.79 E-value=15 Score=36.31 Aligned_cols=69 Identities=10% Similarity=0.082 Sum_probs=46.7
Q ss_pred cCCCcEEEe-chhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh
Q psy17793 62 LDSSMGILQ-NLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKL 133 (397)
Q Consensus 62 ~~~g~~~~Q-d~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~ 133 (397)
+.+|..|.| ++.+.+-..++....|.+|.-+|+|--+...+++. ...+|.+||+++..+..-+-.+..+
T Consensus 39 lFsgLvYpqiwEDp~Vdmeam~~g~ghrivtigSGGcn~L~ylsr---~Pa~id~VDlN~ahiAln~lklaA~ 108 (414)
T COG5379 39 LFSGLVYPQIWEDPSVDMEAMQLGIGHRIVTIGSGGCNMLAYLSR---APARIDVVDLNPAHIALNRLKLAAF 108 (414)
T ss_pred HhcccccccccCCccccHHHHhcCCCcEEEEecCCcchHHHHhhc---CCceeEEEeCCHHHHHHHHHHHHHH
Confidence 345666665 23333333455667788999998886666666655 4679999999999988766555543
No 490
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=62.62 E-value=88 Score=32.94 Aligned_cols=39 Identities=13% Similarity=0.093 Sum_probs=25.0
Q ss_pred EEEEcCCCChHHHHHHHHcCC---CcEEEEEeCCHHHHHHHHHH
Q psy17793 89 VLDMCAAPGNKLTHIALLMND---TGTLIALDKSKPRVTKLEET 129 (397)
Q Consensus 89 VLDlcagpG~kt~~lA~~~~~---~~~V~avD~s~~rl~~l~~n 129 (397)
|.=+|+|-.|.+ +|..+.. +..|+++|+++.+++.+++.
T Consensus 4 I~ViG~GyvGl~--~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g 45 (473)
T PLN02353 4 ICCIGAGYVGGP--TMAVIALKCPDIEVVVVDISVPRIDAWNSD 45 (473)
T ss_pred EEEECCCHHHHH--HHHHHHhcCCCCeEEEEECCHHHHHHHHcC
Confidence 444555554444 4444332 35799999999999887543
No 491
>PRK08264 short chain dehydrogenase; Validated
Probab=62.34 E-value=1.2e+02 Score=27.48 Aligned_cols=74 Identities=15% Similarity=0.076 Sum_probs=45.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHcC-CCc-EEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLMN-DTG-TLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK 163 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~~-~~~-~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~ 163 (397)
+.+||=.| |+|+.+.++|..+. .+. +|++++.++...+. .+ .++.++..|..+... ........
T Consensus 6 ~~~vlItG-gsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~-------~~-~~~~~~~~D~~~~~~-----~~~~~~~~ 71 (238)
T PRK08264 6 GKVVLVTG-ANRGIGRAFVEQLLARGAAKVYAAARDPESVTD-------LG-PRVVPLQLDVTDPAS-----VAAAAEAA 71 (238)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCcccEEEEecChhhhhh-------cC-CceEEEEecCCCHHH-----HHHHHHhc
Confidence 45677666 57888888887554 334 89999988766443 22 357788888875421 00011112
Q ss_pred cCccEEEEcC
Q psy17793 164 ESFDRILLDA 173 (397)
Q Consensus 164 ~~fD~Il~Dp 173 (397)
+.+|.|+..+
T Consensus 72 ~~id~vi~~a 81 (238)
T PRK08264 72 SDVTILVNNA 81 (238)
T ss_pred CCCCEEEECC
Confidence 3589998855
No 492
>PRK06138 short chain dehydrogenase; Provisional
Probab=62.12 E-value=1.3e+02 Score=27.56 Aligned_cols=85 Identities=11% Similarity=0.087 Sum_probs=51.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhcc
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQK 163 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~~ 163 (397)
+.++|=.|+ +|+.+.+++..+ ..+.+|++++.+....+...+.+. .+ .++.++.+|..+...- .+. .......
T Consensus 5 ~k~~lItG~-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~-~~~~~~~~D~~~~~~~--~~~~~~i~~~~ 79 (252)
T PRK06138 5 GRVAIVTGA-GSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-AG-GRAFARQGDVGSAEAV--EALVDFVAARW 79 (252)
T ss_pred CcEEEEeCC-CchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-cC-CeEEEEEcCCCCHHHH--HHHHHHHHHHc
Confidence 456666665 577888888754 344689999998887776665554 33 3478888888764210 000 0000011
Q ss_pred cCccEEEEcCCC
Q psy17793 164 ESFDRILLDAPC 175 (397)
Q Consensus 164 ~~fD~Il~DpPC 175 (397)
+.+|.|+..+..
T Consensus 80 ~~id~vi~~ag~ 91 (252)
T PRK06138 80 GRLDVLVNNAGF 91 (252)
T ss_pred CCCCEEEECCCC
Confidence 478999986543
No 493
>KOG0821|consensus
Probab=62.00 E-value=16 Score=34.70 Aligned_cols=62 Identities=18% Similarity=0.238 Sum_probs=47.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccc
Q psy17793 84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRI 148 (397)
Q Consensus 84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~ 148 (397)
-..+.|+++|-||||.|..+... +..++..+|+|..-+..++...+... ....+...|+..+
T Consensus 49 ~~~~~v~eIgPgpggitR~il~a--~~~RL~vVE~D~RFip~LQ~L~EAa~-~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 49 LTNAYVYEIGPGPGGITRSILNA--DVARLLVVEKDTRFIPGLQMLSEAAP-GKLRIHHGDVLRF 110 (326)
T ss_pred cccceeEEecCCCCchhHHHHhc--chhheeeeeeccccChHHHHHhhcCC-cceEEecccccee
Confidence 34678999999999999888763 55688899999988888876666433 2467777887655
No 494
>PRK06057 short chain dehydrogenase; Provisional
Probab=61.79 E-value=1.1e+02 Score=28.36 Aligned_cols=81 Identities=11% Similarity=-0.022 Sum_probs=47.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQ 162 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~ 162 (397)
.|.+||=.|++ |+.+.+++..+. .+.+|++++.++...+.+.+.+ +. .++..|..+...- ... ......
T Consensus 6 ~~~~vlItGas-ggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~---~~---~~~~~D~~~~~~~--~~~~~~~~~~ 76 (255)
T PRK06057 6 AGRVAVITGGG-SGIGLATARRLAAEGATVVVGDIDPEAGKAAADEV---GG---LFVPTDVTDEDAV--NALFDTAAET 76 (255)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHc---CC---cEEEeeCCCHHHH--HHHHHHHHHH
Confidence 46788888875 677888887653 4568999999887766554432 21 3556676553210 000 000001
Q ss_pred ccCccEEEEcCC
Q psy17793 163 KESFDRILLDAP 174 (397)
Q Consensus 163 ~~~fD~Il~DpP 174 (397)
.+.+|.|+..+-
T Consensus 77 ~~~id~vi~~ag 88 (255)
T PRK06057 77 YGSVDIAFNNAG 88 (255)
T ss_pred cCCCCEEEECCC
Confidence 246899998664
No 495
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=61.56 E-value=1.3e+02 Score=28.91 Aligned_cols=47 Identities=21% Similarity=0.387 Sum_probs=29.2
Q ss_pred ccCCCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHH
Q psy17793 80 YLDVQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127 (397)
Q Consensus 80 ~L~~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~ 127 (397)
....++|++||-.++|. |..+.++|...+ ...|++++.++++.+.++
T Consensus 154 ~~~~~~g~~vlI~g~g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~~~~ 201 (334)
T cd08234 154 LLGIKPGDSVLVFGAGPIGLLLAQLLKLNG-ASRVTVAEPNEEKLELAK 201 (334)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHH
Confidence 44567889999985421 233444555432 223888999988877663
No 496
>KOG1205|consensus
Probab=61.49 E-value=49 Score=32.41 Aligned_cols=91 Identities=19% Similarity=0.174 Sum_probs=60.6
Q ss_pred CCCeEEEEcCCCChHHHHHHH-HcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccchhhHHHhhhc
Q psy17793 85 PGQKVLDMCAAPGNKLTHIAL-LMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQ 162 (397)
Q Consensus 85 ~g~~VLDlcagpG~kt~~lA~-~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~~ 162 (397)
.|..||=-||.+|. +.++|. +...+.+++-+-...++++...+.+++.+-.+ +.++.+|..+...- ..-.......
T Consensus 11 ~~kvVvITGASsGI-G~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~-~~~~~~~~~~ 88 (282)
T KOG1205|consen 11 AGKVVLITGASSGI-GEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESV-KKFVEWAIRH 88 (282)
T ss_pred CCCEEEEeCCCcHH-HHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHH-HHHHHHHHHh
Confidence 36778888887774 444554 33445667777889999999988888887666 88999999876311 0000111223
Q ss_pred ccCccEEEEcCCCCC
Q psy17793 163 KESFDRILLDAPCSG 177 (397)
Q Consensus 163 ~~~fD~Il~DpPCSg 177 (397)
-+..|+.+.|+--+-
T Consensus 89 fg~vDvLVNNAG~~~ 103 (282)
T KOG1205|consen 89 FGRVDVLVNNAGISL 103 (282)
T ss_pred cCCCCEEEecCcccc
Confidence 478999999885443
No 497
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=61.43 E-value=1.2e+02 Score=29.39 Aligned_cols=52 Identities=15% Similarity=0.216 Sum_probs=32.9
Q ss_pred ccCCCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy17793 80 YLDVQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS 136 (397)
Q Consensus 80 ~L~~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~ 136 (397)
.....+|++||-.++|. |..+.++|..++ ...|++++.++.+.+.++ .+|..
T Consensus 154 ~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G-~~~v~~~~~~~~~~~~l~----~~g~~ 206 (343)
T cd08236 154 LAGITLGDTVVVIGAGTIGLLAIQWLKILG-AKRVIAVDIDDEKLAVAR----ELGAD 206 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHH----HcCCC
Confidence 34567888999886433 445556666542 224888888887766553 35653
No 498
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=61.27 E-value=42 Score=33.79 Aligned_cols=48 Identities=15% Similarity=0.169 Sum_probs=29.1
Q ss_pred CCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHH-HHHHHHHHHHhCCCc
Q psy17793 84 QPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPR-VTKLEETIKKLQLSS 137 (397)
Q Consensus 84 ~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~r-l~~l~~n~~~~g~~~ 137 (397)
++|++||=.|+|+ |..+.++|..+ +.+|++++.++++ .+. ++++|.+.
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~--Ga~Vi~~~~~~~~~~~~----a~~lGa~~ 226 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAF--GLRVTVISRSSEKEREA----IDRLGADS 226 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHc--CCeEEEEeCChHHhHHH----HHhCCCcE
Confidence 5789998776532 33345556654 3478899887554 333 34577743
No 499
>PRK09186 flagellin modification protein A; Provisional
Probab=60.72 E-value=1.4e+02 Score=27.47 Aligned_cols=85 Identities=19% Similarity=0.151 Sum_probs=52.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHH-hCCCcEEEEEccccccccc-chhhHHHhhhc
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKK-LQLSSIQTHVYDSTRINTS-SQIDIERMKLQ 162 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~-~g~~~v~~~~~D~~~~~~~-~~~d~~~~~~~ 162 (397)
+.+||=.|+ +|+.+.++|..+. .+.+|+.++.+++.++.+.+.+.. .+-..+.++.+|..+...- ...+.... .
T Consensus 4 ~k~vlItGa-s~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~--~ 80 (256)
T PRK09186 4 GKTILITGA-GGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAE--K 80 (256)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHH--H
Confidence 566776665 5778888887653 456899999998888777666643 3334466777888764210 00000001 1
Q ss_pred ccCccEEEEcC
Q psy17793 163 KESFDRILLDA 173 (397)
Q Consensus 163 ~~~fD~Il~Dp 173 (397)
-+.+|.|+.++
T Consensus 81 ~~~id~vi~~A 91 (256)
T PRK09186 81 YGKIDGAVNCA 91 (256)
T ss_pred cCCccEEEECC
Confidence 14589999876
No 500
>PRK07035 short chain dehydrogenase; Provisional
Probab=60.65 E-value=1.4e+02 Score=27.48 Aligned_cols=84 Identities=13% Similarity=0.090 Sum_probs=51.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhhcc
Q psy17793 86 GQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKLQK 163 (397)
Q Consensus 86 g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~~~ 163 (397)
+..||=.|++ |+.+.+++..+. .+.+|+.++.+...++.+.+.+...+. ++.++..|..+...-. ..+.... .-
T Consensus 8 ~k~vlItGas-~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~--~~ 83 (252)
T PRK07035 8 GKIALVTGAS-RGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGG-KAEALACHIGEMEQIDALFAHIRE--RH 83 (252)
T ss_pred CCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHHHH--Hc
Confidence 4566666655 666777776543 455899999999888887777766553 4666777876542100 0000000 11
Q ss_pred cCccEEEEcC
Q psy17793 164 ESFDRILLDA 173 (397)
Q Consensus 164 ~~fD~Il~Dp 173 (397)
+++|.|+..+
T Consensus 84 ~~id~li~~a 93 (252)
T PRK07035 84 GRLDILVNNA 93 (252)
T ss_pred CCCCEEEECC
Confidence 4689998755
Done!