RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17793
(397 letters)
>gnl|CDD|223222 COG0144, Sun, tRNA and rRNA cytosine-C5-methylases [Translation,
ribosomal structure and biogenesis].
Length = 355
Score = 207 bits (529), Expect = 1e-63
Identities = 89/249 (35%), Positives = 123/249 (49%), Gaps = 37/249 (14%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKL 126
+Q+ S L LD +PG++VLD+CAAPG K TH+A LM N+ ++A+D S R+ +L
Sbjct: 139 YVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRL 198
Query: 127 EETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPM 183
E +K+L + ++ D+ R+ + E FDRILLDAPCSG G + P
Sbjct: 199 RENLKRLGVRNVIVVNKDARRLA--------ELLPGGEKFDRILLDAPCSGTGVIRRDP- 249
Query: 184 FYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEE 243
+ + I A +QK++L A + LLK G+LVY TCSL+ EE
Sbjct: 250 ---DVKWRRTPEDIAELAKLQKEILAAALK-----------LLKPGGVLVYSTCSLTPEE 295
Query: 244 NEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIG 303
NE V+ L RHP+ EL G E +R P + T G
Sbjct: 296 NEEVVERFLERHPDFELEPVRLPWG-PLFEGLGSELGK---TRRL-YPHVHG-----TDG 345
Query: 304 FFICKLRKK 312
FFI KLRKK
Sbjct: 346 FFIAKLRKK 354
>gnl|CDD|237857 PRK14902, PRK14902, 16S rRNA methyltransferase B; Provisional.
Length = 444
Score = 192 bits (491), Expect = 4e-57
Identities = 91/247 (36%), Positives = 128/247 (51%), Gaps = 42/247 (17%)
Query: 70 QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEET 129
Q+ S+L LD + G VLD CAAPG K THIA L+ +TG ++ALD + ++ +EE
Sbjct: 235 QDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEEN 294
Query: 130 IKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP-MFY 185
K+L L++I+T D+ +++ E FD+IL+DAPCSG G ++P + Y
Sbjct: 295 AKRLGLTNIETKALDARKVHEKF----------AEKFDKILVDAPCSGLGVIRRKPDIKY 344
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
N + I+S IQ ++L++V LKK GILVY TC++ EENE
Sbjct: 345 NKTK-----EDIESLQEIQLEILESVA-----------QYLKKGGILVYSTCTIEKEENE 388
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
VI L HPE ELV + + +Q ++P D TD GFF
Sbjct: 389 EVIEAFLEEHPEFELVPL-----QHEKPDELVYEVKDGYLQ-----ILPNDYGTD--GFF 436
Query: 306 ICKLRKK 312
I KLRKK
Sbjct: 437 IAKLRKK 443
>gnl|CDD|237856 PRK14901, PRK14901, 16S rRNA methyltransferase B; Provisional.
Length = 434
Score = 172 bits (437), Expect = 3e-49
Identities = 91/274 (33%), Positives = 129/274 (47%), Gaps = 62/274 (22%)
Query: 54 LSQVPN-VALDSSMGILQNLP-------------SILAGHYLDVQPGQKVLDMCAAPGNK 99
+ +P + L + G ++ LP + L LD QPG+ +LD CAAPG K
Sbjct: 207 IPGLPQGLRLTGNPGSIRQLPGYEEGWWTVQDRSAQLVAPLLDPQPGEVILDACAAPGGK 266
Query: 100 LTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERM 159
THIA LM D G + A+D+S R+ KL+E ++L L SI+ DS + +
Sbjct: 267 TTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSR------NLLELKP 320
Query: 160 KLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDK-KIKSYANIQKKLLQAVYRFVSLF 218
+ + FDRILLDAPCSG G + + ++ KI+ A +Q +LL+++
Sbjct: 321 QW-RGYFDRILLDAPCSGLGT--LHRHPDARWRQTPEKIQELAPLQAELLESL------- 370
Query: 219 DWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLE 278
PLLK G LVY TC+L ENEA I L RHP+ + LE
Sbjct: 371 ----APLLKPGGTLVYATCTLHPAENEAQIEQFLARHPDWK-----------------LE 409
Query: 279 AEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKK 312
Q + P ++ D GFF+ LRKK
Sbjct: 410 PPKQKIW--------PHRQDGD--GFFMAVLRKK 433
>gnl|CDD|201649 pfam01189, Nol1_Nop2_Fmu, NOL1/NOP2/sun family.
Length = 277
Score = 148 bits (375), Expect = 5e-42
Identities = 94/281 (33%), Positives = 132/281 (46%), Gaps = 49/281 (17%)
Query: 44 RGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQKVL 90
GV +E V D I LP G L+ Q + +L
Sbjct: 32 AGVQLEPLGRYPHALPV-GDLPYSIGS-LPPFENGAVTVQDASSQLDAIALNPQEDEFIL 89
Query: 91 DMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINT 150
DMCAAPG K THIA LM + GT++A+D++K R+ ++ I++L + +I D+ +I
Sbjct: 90 DMCAAPGGKTTHIAELMKNEGTVVAVDRNKQRLKRVYANIQRLGVFNIIVQEGDARQI-- 147
Query: 151 SSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN-SFLNLDKKIKSYANIQKKLLQ 209
KL FDRILLDAPCSG G + + + +L + I A +QK+LL+
Sbjct: 148 -------DQKLLGGEFDRILLDAPCSGTG--VIRRDPDIKWLRREADIAQLAELQKELLK 198
Query: 210 AVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGM 269
A L+K G+LVY TCS+ EENEAVI + L + P+VELV T G
Sbjct: 199 A-----------AWDLVKPGGVLVYSTCSVLPEENEAVIKYFLQKRPDVELVPTGLSEGK 247
Query: 270 KGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLR 310
LA + ++ + P + D GFF KLR
Sbjct: 248 IALAKRIVKG-----GLQSLPHELNRD------GFFFAKLR 277
>gnl|CDD|188051 TIGR00446, nop2p, NOL1/NOP2/sun family putative RNA methylase.
[Protein synthesis, tRNA and rRNA base modification].
Length = 264
Score = 142 bits (359), Expect = 9e-40
Identities = 81/253 (32%), Positives = 115/253 (45%), Gaps = 48/253 (18%)
Query: 73 PSILAGHY-------------LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKS 119
P L G+Y L+ + ++VLDM AAPG K T I+ LM + G ++A + S
Sbjct: 46 PEYLFGYYYPQEASSMIPPIALEPREDERVLDMAAAPGGKTTQISQLMKNKGCIVANEIS 105
Query: 120 KPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG 179
K R L I ++ + + D + L+ FD ILLDAPCSG G
Sbjct: 106 KSRTKALISNINRMGVLNTIVINADGRKFG--------AYLLK---FDAILLDAPCSGEG 154
Query: 180 QRPMFYNANSFLNLDKK-IKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS 238
+ + + N ++ IK + +QK+L+ A I LK G+LVY TCS
Sbjct: 155 V--IRKDPSRKRNWSEEDIKYCSLLQKELIDA-----------AIDALKPGGVLVYSTCS 201
Query: 239 LSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRN 298
L VEENE VI +IL + P+V G + + E + + R P N
Sbjct: 202 LEVEENEEVIDYILRKRPDVVEE---IIKGDEFFGINIGKGEVKGAL-RVFPQ------N 251
Query: 299 TDTIGFFICKLRK 311
D GFF+ KLRK
Sbjct: 252 YDCEGFFVAKLRK 264
>gnl|CDD|233025 TIGR00563, rsmB, ribosomal RNA small subunit methyltransferase
RsmB. This protein is also known as sun protein. The
reading frame was originally interpreted as two reading
frames, fmu and fmv. The recombinant protein from E.
coli was shown to methylate only C967 of small subunit
(16S) ribosomal RNA and to produce only m5C at that
position. The seed alignment is built from bacterial
sequences only. Eukaryotic homologs include Nop2, a
protein required for processing pre-rRNA, that is likely
also a rRNA methyltransferase, although the fine
specificity may differ. Cutoff scores are set to avoid
treating archaeal and eukaroytic homologs automatically
as functionally equivalent, although they may have very
similar roles [Protein synthesis, tRNA and rRNA base
modification].
Length = 426
Score = 130 bits (328), Expect = 6e-34
Identities = 74/247 (29%), Positives = 105/247 (42%), Gaps = 45/247 (18%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q+ + +L Q + +LD CAAPG K THI L ++ALD + R+ ++ E
Sbjct: 222 VQDASAQWVATWLAPQNEETILDACAAPGGKTTHILELAPQ-AQVVALDIHEHRLKRVYE 280
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
+K+L L+ D S + E+ FDRILLDAPCS G + P
Sbjct: 281 NLKRLGLTIKAETK-DGDGRGPSQWAENEQ-------FDRILLDAPCSATGVIRRHPDI- 331
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+L + I A +Q ++L A++ PLLK G LVY TCS+ EEN
Sbjct: 332 ---KWLRKPRDIAELAELQSEILDAIW-----------PLLKTGGTLVYATCSVLPEENS 377
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
I L HP+ +T +Q ++P D GFF
Sbjct: 378 EQIKAFLQEHPDFPFEKT--------------GTPEQVRDGGL--QILPHAEEGD--GFF 419
Query: 306 ICKLRKK 312
KL KK
Sbjct: 420 YAKLIKK 426
>gnl|CDD|236790 PRK10901, PRK10901, 16S rRNA methyltransferase B; Provisional.
Length = 427
Score = 129 bits (327), Expect = 1e-33
Identities = 79/245 (32%), Positives = 108/245 (44%), Gaps = 62/245 (25%)
Query: 76 LAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL 135
LA L Q G++VLD CAAPG K HI L + ++ALD R+ ++ E +++L L
Sbjct: 235 LAATLLAPQNGERVLDACAAPGGKTAHI-LELAPQAQVVALDIDAQRLERVRENLQRLGL 293
Query: 136 SSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG--QRPMFYNANSFLNL 193
+ V D+ + FDRILLDAPCS G +R +
Sbjct: 294 KA-TVIVGDARDPAQW---------WDGQPFDRILLDAPCSATGVIRR----------HP 333
Query: 194 DKK-------IKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEA 246
D K I + A +Q ++L A+ W PLLK G L+Y TCS+ EENE
Sbjct: 334 DIKWLRRPEDIAALAALQSEILDAL--------W---PLLKPGGTLLYATCSILPEENEQ 382
Query: 247 VIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFI 306
I L RHP+ EL+ D Q+ G L+P + + D GFF
Sbjct: 383 QIKAFLARHPDAELL-------------------DTGTPQQPGRQLLPGEEDGD--GFFY 421
Query: 307 CKLRK 311
L K
Sbjct: 422 ALLIK 426
>gnl|CDD|184896 PRK14903, PRK14903, 16S rRNA methyltransferase B; Provisional.
Length = 431
Score = 120 bits (302), Expect = 2e-30
Identities = 64/198 (32%), Positives = 107/198 (54%), Gaps = 29/198 (14%)
Query: 80 YLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQ 139
++++PG +VLD CAAPG K T IA LM D G ++A+D S+ ++ +E+ K+L+LSSI+
Sbjct: 232 LMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIE 291
Query: 140 THVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK--I 197
+ D+ R+ Q ++FDRIL+DAPC+ G N L K
Sbjct: 292 IKIADAERLTEYVQ----------DTFDRILVDAPCTSLG---TARNHPEVLRRVNKEDF 338
Query: 198 KSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPE 257
K + IQ +++ W+ LL+K GIL+Y TC+++ EEN V+ ++ +
Sbjct: 339 KKLSEIQLRIVSQA--------WK---LLEKGGILLYSTCTVTKEENTEVVKRFVYEQKD 387
Query: 258 VELVQT---LPQLGMKGL 272
E++ L + ++G+
Sbjct: 388 AEVIDIRDKLEEFEVEGI 405
>gnl|CDD|237858 PRK14904, PRK14904, 16S rRNA methyltransferase B; Provisional.
Length = 445
Score = 115 bits (291), Expect = 1e-28
Identities = 65/192 (33%), Positives = 90/192 (46%), Gaps = 32/192 (16%)
Query: 70 QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEET 129
QN LA L+ QPG VLD+CAAPG K T +A LM + G + A+D+ ++ K+
Sbjct: 235 QNPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSH 294
Query: 130 IKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSG---FGQRP-MFY 185
L ++ I+T D+ +E D ILLDAPC+G G+R + +
Sbjct: 295 ASALGITIIETIEGDARSF------------SPEEQPDAILLDAPCTGTGVLGRRAELRW 342
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+K+ +Q +LL LLK G+LVY TCS+ EENE
Sbjct: 343 KLTP-----EKLAELVGLQAELLD-----------HAASLLKPGGVLVYATCSIEPEENE 386
Query: 246 AVIAWILHRHPE 257
I L RHPE
Sbjct: 387 LQIEAFLQRHPE 398
>gnl|CDD|183387 PRK11933, yebU, rRNA (cytosine-C(5)-)-methyltransferase RsmF;
Reviewed.
Length = 470
Score = 96.1 bits (240), Expect = 1e-21
Identities = 81/230 (35%), Positives = 111/230 (48%), Gaps = 43/230 (18%)
Query: 87 QKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDS 145
Q+VLDM AAPG+K T IA LMN+ G ++A + S RV L I + +S TH +D
Sbjct: 115 QRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTH-FDG 173
Query: 146 TRINTSSQIDIERM--KLQKESFDRILLDAPCSGFGQ-RPMFYNANSFLNLD-KKIKSYA 201
R+ E+FD ILLDAPCSG G R + ++ N + A
Sbjct: 174 ------------RVFGAALPETFDAILLDAPCSGEGTVRK---DPDALKNWSPESNLEIA 218
Query: 202 NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
Q++L++ S F LK G LVY TC+L+ EEN+AV W+ +P+
Sbjct: 219 ATQRELIE------SAFH-----ALKPGGTLVYSTCTLNREENQAVCLWLKETYPDAVEF 267
Query: 262 QTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
+ L L G A K L E + F P I D+ GFF+ +LRK
Sbjct: 268 EPLGDL-FPG-AEKALTEE--GFLHVF--PQI-----YDSEGFFVARLRK 306
>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional.
Length = 241
Score = 41.8 bits (99), Expect = 3e-04
Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 12/92 (13%)
Query: 81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQT 140
L VQPG +VLD+ PGN +A + G ++ +D+S+ + +
Sbjct: 15 LAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLA------------LAKE 62
Query: 141 HVYDSTRINTSSQIDIERMKLQKESFDRILLD 172
+ D + + SFD + D
Sbjct: 63 RAAGLGPNVEFVRGDADGLPFPDGSFDAVRSD 94
>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain. This family
appears to be have methyltransferase activity.
Length = 151
Score = 38.2 bits (89), Expect = 0.002
Identities = 31/159 (19%), Positives = 59/159 (37%), Gaps = 42/159 (26%)
Query: 84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVY 143
+ G KVLD+ G +A + ++ +D S+ + K +E KKL +++
Sbjct: 2 KSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENVEFIQG 61
Query: 144 DSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANI 203
D ++ +++L+ SFD ++ +N LN
Sbjct: 62 DIE--------ELPQLQLEDNSFDVVI----------------SNEVLNHL-------PD 90
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVE 242
K+L+ + R +LK G+L+ L E
Sbjct: 91 PDKVLEEIIR-----------VLKPGGVLIVSDPVLLSE 118
>gnl|CDD|201816 pfam01472, PUA, PUA domain. The PUA domain named after
Pseudouridine synthase and Archaeosine transglycosylase,
was detected in archaeal and eukaryotic pseudouridine
synthases, archaeal archaeosine synthases, a family of
predicted ATPases that may be involved in RNA
modification, a family of predicted archaeal and
bacterial rRNA methylases. Additionally, the PUA domain
was detected in a family of eukaryotic proteins that
also contain a domain homologous to the translation
initiation factor eIF1/SUI1; these proteins may comprise
a novel type of translation factors. Unexpectedly, the
PUA domain was detected also in bacterial and yeast
glutamate kinases; this is compatible with the
demonstrated role of these enzymes in the regulation of
the expression of other genes. It is predicted that the
PUA domain is an RNA binding domain.
Length = 74
Score = 33.2 bits (77), Expect = 0.029
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 348 IIVDQPCALAVLRGADVFAPGVL 370
++VD A+L GA + APGV+
Sbjct: 3 VVVDDGAVEAILNGASLLAPGVV 25
>gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase.
MenG is a generic term for a methyltransferase that
catalyzes the last step in menaquinone biosynthesis; the
exact enzymatic activity differs for different MenG
because the menaquinone differ in their prenoid side
chains in different species. Members of this MenG
protein family are 2-heptaprenyl-1,4-naphthoquinone
methyltransferase, and are found together in operons
with the two subunits of the heptaprenyl diphosphate
synthase in Bacillus subtilis and related species
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Menaquinone and ubiquinone].
Length = 231
Score = 34.4 bits (79), Expect = 0.067
Identities = 14/59 (23%), Positives = 29/59 (49%)
Query: 81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQ 139
++VQ G LD+C + +A + G +I LD S+ ++ + +K L +++
Sbjct: 41 MNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVE 99
>gnl|CDD|224017 COG1092, COG1092, Predicted SAM-dependent methyltransferases
[General function prediction only].
Length = 393
Score = 35.0 bits (81), Expect = 0.068
Identities = 34/209 (16%), Positives = 66/209 (31%), Gaps = 59/209 (28%)
Query: 78 GHYLDVQP----------GQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
G +LD + G++VL++ + G + + + ++D SK +
Sbjct: 200 GFFLDQRDNRRALGELAAGKRVLNLFSYTGG--FSVHAALGGASEVTSVDLSKRALEWAR 257
Query: 128 ETIKKLQLSS-----IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRP 182
E + L I V+ + + + + E FD I+LD P F +
Sbjct: 258 ENAELNGLDGDRHRFIVGDVFKW----------LRKAERRGEKFDLIILDPP--SFARSK 305
Query: 183 -MFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSV 241
++A + Y ++ L+ LL G LV +CS
Sbjct: 306 KQEFSA---------QRDYKDLNDLALR---------------LLAPGGTLVTSSCSRHF 341
Query: 242 EENEAVIAWI-----LHRHPEVELVQTLP 265
+ + R + + P
Sbjct: 342 SSDLFLEIIARAAAAAGRRAQEIEGEGQP 370
>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent
methyltransferases (SAM or AdoMet-MTase), class I;
AdoMet-MTases are enzymes that use
S-adenosyl-L-methionine (SAM or AdoMet) as a substrate
for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy). There are at least
five structurally distinct families of AdoMet-MTases,
class I being the largest and most diverse. Within this
class enzymes can be classified by different substrate
specificities (small molecules, lipids, nucleic acids,
etc.) and different target atoms for methylation
(nitrogen, oxygen, carbon, sulfur, etc.).
Length = 107
Score = 32.8 bits (75), Expect = 0.081
Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 12/95 (12%)
Query: 88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
+VLD+ G +A + +D S + + L +++ D+
Sbjct: 1 RVLDLGCGTGALALALASGPG--ARVTGVDISPVALELARKAAAALLADNVEVLKGDAEE 58
Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRP 182
+ ESFD I+ D P +
Sbjct: 59 LP----------PEADESFDVIISDPPLHHLVEDL 83
>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain. This family
contains methyltransferase domains.
Length = 117
Score = 32.0 bits (73), Expect = 0.14
Identities = 27/154 (17%), Positives = 46/154 (29%), Gaps = 38/154 (24%)
Query: 86 GQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYD 144
G +VLD A G A ++ ++ + L+ ++ V D
Sbjct: 1 GDRVLDPGAGSGA-FLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGD 59
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQ 204
+ + L SFD +L + P + K ++
Sbjct: 60 ARELLE----------LPDGSFDLVLGNPP---------------YGPRAGDPKDNRDLY 94
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS 238
+ L A R LLK G+LV T +
Sbjct: 95 DRFLAAALR-----------LLKPGGVLVVITPA 117
>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone
biosynthesis [Coenzyme metabolism].
Length = 238
Score = 33.0 bits (76), Expect = 0.17
Identities = 36/153 (23%), Positives = 54/153 (35%), Gaps = 46/153 (30%)
Query: 81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQT 140
L ++PG KVLD+ G+ +A TG ++ LD S+ LE +KL+ +Q
Sbjct: 47 LGIKPGDKVLDVACGTGDMALLLAKS-VGTGEVVGLDISESM---LEVAREKLKKKGVQN 102
Query: 141 HVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY 200
+ D E + SFD + FG R N+
Sbjct: 103 VEF--------VVGDAENLPFPDNSFDAVT-----ISFGLR----------NVTDI---- 135
Query: 201 ANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILV 233
K L+ +YR LK G L+
Sbjct: 136 ----DKALKEMYRV-----------LKPGGRLL 153
>gnl|CDD|223370 COG0293, FtsJ, 23S rRNA methylase [Translation, ribosomal structure
and biogenesis].
Length = 205
Score = 32.6 bits (75), Expect = 0.20
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 10/61 (16%)
Query: 83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALD----KSKPRVTKL------EETIKK 132
+PG V+D+ AAPG A + G ++A+D K P V L E+T++K
Sbjct: 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPGVIFLQGDITDEDTLEK 102
Query: 133 L 133
L
Sbjct: 103 L 103
>gnl|CDD|216320 pfam01135, PCMT, Protein-L-isoaspartate(D-aspartate)
O-methyltransferase (PCMT).
Length = 210
Score = 32.7 bits (75), Expect = 0.22
Identities = 14/65 (21%), Positives = 33/65 (50%)
Query: 80 YLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQ 139
L+++PG +VL++ + G A ++ + G +++++ V ++KL L ++
Sbjct: 68 LLELKPGMRVLEIGSGSGYLTACFARMVGEVGLVVSIEHIPELVEIARRNLEKLGLENVI 127
Query: 140 THVYD 144
V D
Sbjct: 128 VVVGD 132
>gnl|CDD|232816 TIGR00080, pimt, protein-L-isoaspartate(D-aspartate)
O-methyltransferase. This is an all-kingdom (but not
all species) full-length ortholog enzyme for repairing
aging proteins. Among the prokaryotes, the gene name is
pcm. Among eukaryotes, pimt [Protein fate, Protein
modification and repair].
Length = 215
Score = 32.5 bits (74), Expect = 0.24
Identities = 17/68 (25%), Positives = 37/68 (54%)
Query: 80 YLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQ 139
L+++PG KVL++ G + +A ++ G ++++++ K E ++KL L ++
Sbjct: 72 LLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVI 131
Query: 140 THVYDSTR 147
V D T+
Sbjct: 132 VIVGDGTQ 139
>gnl|CDD|224927 COG2016, COG2016, Predicted RNA-binding protein (contains PUA
domain) [Translation, ribosomal structure and
biogenesis].
Length = 161
Score = 31.9 bits (73), Expect = 0.26
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 347 QIIVDQPCALAVLRGADVFAPGVLAM 372
++VD+ VL GADV APG+++
Sbjct: 78 VVVVDEGAVKFVLNGADVMAPGIVSA 103
>gnl|CDD|214635 smart00359, PUA, Putative RNA-binding Domain in PseudoUridine
synthase and Archaeosine transglycosylase.
Length = 76
Score = 29.1 bits (66), Expect = 0.78
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 347 QIIVDQPCALAVLRGADVFAPGVLAM 372
+++VD A+L GA + APGV+ +
Sbjct: 2 KVVVDDGAEKAILNGASLLAPGVVRV 27
>gnl|CDD|183025 PRK11188, rrmJ, 23S rRNA methyltransferase J; Provisional.
Length = 209
Score = 30.9 bits (70), Expect = 0.83
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALD 117
+PG V+D+ AAPG + + D G +IA D
Sbjct: 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACD 83
>gnl|CDD|232976 TIGR00438, rrmJ, cell division protein FtsJ. Methylates the 23S
rRNA. Previously known as cell division protein ftsJ.//
Trusted cutoff too high? [SS 10/1/04] [Protein
synthesis, tRNA and rRNA base modification].
Length = 188
Score = 30.6 bits (69), Expect = 0.88
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 10/61 (16%)
Query: 83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALD--KSKPRVT--------KLEETIKK 132
++PG VLD+ AAPG + G +IA+D KP EE + K
Sbjct: 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMKPIENVDFIRGDFTDEEVLNK 89
Query: 133 L 133
+
Sbjct: 90 I 90
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional.
Length = 293
Score = 31.2 bits (71), Expect = 0.88
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKK 132
++PG KVL + AA G ++H++ L+ G + A++ S L KK
Sbjct: 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK 179
>gnl|CDD|234310 TIGR03684, arCOG00985, arCOG04150 universal archaeal PUA-domain
protein. This universal archaeal protein contains a
domain possibly associated with RNA binding (pfam01472,
TIGR00451).
Length = 150
Score = 29.9 bits (68), Expect = 1.4
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 348 IIVDQPCALAVLRGADVFAPGVL 370
++VD+ ++ GAD+ APG++
Sbjct: 72 VVVDEGAVKFIINGADIMAPGIV 94
>gnl|CDD|224858 COG1947, IspE, 4-diphosphocytidyl-2C-methyl-D-erythritol
2-phosphate synthase [Lipid metabolism].
Length = 289
Score = 30.3 bits (69), Expect = 1.8
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 207 LLQAVYRFVSLFDWQGIPLLKKDGILVYCT--CSLSVEENEAVIAW-ILHRH 255
L+ +++F+ L D I DG +V T L +EN A +L +
Sbjct: 28 ELETLFQFIDLGDELTIRPRDDDGFIVLGTFADGLPTDENLVYRAAELLRKR 79
>gnl|CDD|216666 pfam01728, FtsJ, FtsJ-like methyltransferase. This family
consists of FtsJ from various bacterial and archaeal
sources FtsJ is a methyltransferase, but actually has
no effect on cell division. FtsJ's substrate is the 23S
rRNA. The 1.5 A crystal structure of FtsJ in complex
with its cofactor S-adenosylmethionine revealed that
FtsJ has a methyltransferase fold. This family also
includes the N terminus of flaviviral NS5 protein. It
has been hypothesised that the N-terminal domain of NS5
is a methyltransferase involved in viral RNA capping.
Length = 177
Score = 29.5 bits (67), Expect = 1.8
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 75 ILAGHYLDVQPGQKVLDMCAAPG 97
I L G+ VLD+ AAPG
Sbjct: 12 IDERFGLKPGKGKTVLDLGAAPG 34
>gnl|CDD|215847 pfam00305, Lipoxygenase, Lipoxygenase.
Length = 667
Score = 30.1 bits (68), Expect = 2.5
Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 18/84 (21%)
Query: 247 VIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPL-----IPTDRNTDT 301
+ IL RH E+ LG + H + E A +RFG L T+RN D
Sbjct: 594 SVIEILSRHASDEVY-----LGQRDEEHWTSDKEPLAAFKRFGKKLAEIEKKITERNKDL 648
Query: 302 IGFFICKLRKKYG--EAPEIYIHP 323
L+ + G + P + P
Sbjct: 649 ------SLKNRSGPVKMPYTLLKP 666
>gnl|CDD|202698 pfam03602, Cons_hypoth95, Conserved hypothetical protein 95.
Length = 183
Score = 29.1 bits (66), Expect = 2.9
Identities = 27/143 (18%), Positives = 45/143 (31%), Gaps = 42/143 (29%)
Query: 114 IALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDA 173
+ ++K K V L+E ++ L L + + + R+ + FD + LD
Sbjct: 70 VFVEKDKKAVATLKENLEALGLEGETA------VLRNDAARALLRLAGKGPPFDLVFLDP 123
Query: 174 PCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILV 233
P YA K L++ ++ W L + L+
Sbjct: 124 P-------------------------YA---KGLIEEALELLAENGW-----LNPNA-LI 149
Query: 234 YCTCSLSVEENEAVIA-WILHRH 255
S EE A LHR
Sbjct: 150 VVETE-SDEELPEQPANLELHRE 171
>gnl|CDD|212567 cd11694, DHR2_DOCK_D, Dock Homology Region 2, a GEF domain, of
Class D Dedicator of Cytokinesis proteins. DOCK
proteins are atypical guanine nucleotide exchange
factors (GEFs) that lack the conventional Dbl homology
(DH) domain. As GEFs, they activate small GTPases by
exchanging bound GDP for free GTP. They are divided into
four classes (A-D) based on sequence similarity and
domain architecture; class D, also called the Zizimin
subfamily, includes Dock9, 10 and 11. Class D Docks are
specific GEFs for Cdc42. Dock9 plays important roles in
spine formation and dendritic growth. Dock10 and Dock11
are preferentially expressed in lymphocytes. All DOCKs
contain two homology domains: the DHR-1 (Dock homology
region-1), also called CZH1 (CED-5, Dock180, and
MBC-zizimin homology 1), and DHR-2 (also called CZH2 or
Docker). The DHR-1 domain binds
phosphatidylinositol-3,4,5-triphosphate. This alignment
model represents the DHR-2 domain of class D DOCKs,
which contains the catalytic GEF activity for Cdc42.
Class D DOCKs also contain a Pleckstrin homology (PH)
domain at the N-terminus.
Length = 376
Score = 29.2 bits (66), Expect = 3.7
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 43/112 (38%)
Query: 114 IALDKSKPRVTKLEETI-------KKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESF 166
+A+D+ + +V +LEE I KKLQL +Q V S ++N
Sbjct: 266 VAIDEMQSKVKELEELISTEPVDMKKLQLR-LQGSV--SVQVNAG--------------- 307
Query: 167 DRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYR-FVSL 217
P+ Y A +FL +K+Y + Q + L+ V+R F+
Sbjct: 308 ---------------PLAY-ARAFLE-PTTVKNYPDDQVEDLKDVFRDFIKA 342
>gnl|CDD|237757 PRK14560, PRK14560, putative RNA-binding protein; Provisional.
Length = 160
Score = 28.3 bits (64), Expect = 5.2
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 348 IIVDQPCALAVLRGADVFAPGVLAM 372
++VD V GADV APG++
Sbjct: 79 VVVDAGAVKFVSNGADVMAPGIVEA 103
>gnl|CDD|184409 PRK13942, PRK13942, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 212
Score = 28.4 bits (64), Expect = 5.5
Identities = 14/53 (26%), Positives = 30/53 (56%)
Query: 81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKL 133
LD++ G KVL++ G +A ++ +G ++ +++ K ++T+KKL
Sbjct: 72 LDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKL 124
>gnl|CDD|224378 COG1461, COG1461, Predicted kinase related to dihydroxyacetone
kinase [General function prediction only].
Length = 542
Score = 28.8 bits (65), Expect = 6.6
Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 13/79 (16%)
Query: 186 NANSFLNL-DKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDG--ILVYCTCSLSVE 242
FL + + KI + L A+ + + LL +D + +Y + E
Sbjct: 458 KKGDFLGIVNGKIVVSG---EDLEDALKKTLEK-------LLDEDSEIVTIYYGKDATEE 507
Query: 243 ENEAVIAWILHRHPEVELV 261
E E + I ++P+VE+
Sbjct: 508 EAEELEKKIEEKYPDVEVE 526
>gnl|CDD|191051 pfam04640, PLATZ, PLATZ transcription factor. Plant AT-rich
sequence and zinc-binding proteins (PLATZ) are zinc
dependant DNA binding proteins. They bind to AT rich
sequences and functions in transcriptional repression.
Length = 72
Score = 26.2 bits (58), Expect = 6.6
Identities = 7/26 (26%), Positives = 17/26 (65%)
Query: 123 VTKLEETIKKLQLSSIQTHVYDSTRI 148
V ++ + K + +S +QT+V +S ++
Sbjct: 8 VVRVSDIQKLIDISGVQTYVINSAKV 33
>gnl|CDD|227535 COG5210, COG5210, GTPase-activating protein [General function
prediction only].
Length = 496
Score = 28.6 bits (64), Expect = 6.7
Identities = 19/132 (14%), Positives = 32/132 (24%), Gaps = 24/132 (18%)
Query: 106 LMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTS--------SQIDIE 157
++++ G KS+ +L + + +T S
Sbjct: 102 VVSNFGLNNKSLKSQSTSPELP------KRLKDSLPTHLPEASSTEKDFSSFKGSSSLNS 155
Query: 158 RMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANIQKKLLQAVYRFVS 216
+L KE L R L DK I L +
Sbjct: 156 NPELNKE---INELSLKEEPQKLR------YYELAADKLWISYLDPNPLSFLPVQLSKLR 206
Query: 217 LFDWQGIPLLKK 228
+GIP +
Sbjct: 207 ELIRKGIPNELR 218
>gnl|CDD|183497 PRK12394, PRK12394, putative metallo-dependent hydrolase;
Provisional.
Length = 379
Score = 28.6 bits (64), Expect = 7.3
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 271 GLAHKDLEAEDQAVMQRFGPPLIPTDRNTDT 301
G +H D+ +A+ F P +I +D +T T
Sbjct: 250 GRSHFDMNVARRAIANGFLPDIISSDLSTIT 280
>gnl|CDD|211341 cd02576, PseudoU_synth_ScPUS7, Pseudouridine synthase, TruD family.
This group consists of eukaryotic pseudouridine
synthases similar to Saccharomyces cerevisiae Pus7.
Pseudouridine synthases catalyze the isomerization of
specific uridines in an RNA molecule to pseudouridines
(5-ribosyluracil, psi). Saccharomyces cerevisiae Pus7
makes psi35 in U2 small nuclear RNA (U2 snRNA), psi13 in
cytoplasmic tRNAs and psi35 in pre-tRNATyr. Psi35 in
yeast U2 snRNA and psi13 in tRNAs are highly
phylogenetically conserved. Psi34 is the mammalian U2
snRNA counterpart of yeast U2 snRNA psi35.
Length = 371
Score = 28.3 bits (64), Expect = 7.8
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
Query: 285 MQRFGPPLIPTDRNTDTIGFFICKLRKKYGEAPEIYIHPH 324
+QRFG IPT IG I L++ + EA ++ + P
Sbjct: 151 LQRFGTFSIPTHE----IGIAI--LKENWKEAVDLILKPR 184
>gnl|CDD|234923 PRK01222, PRK01222, N-(5'-phosphoribosyl)anthranilate isomerase;
Provisional.
Length = 210
Score = 27.8 bits (63), Expect = 8.1
Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 16/70 (22%)
Query: 126 LEETIKKLQLSSIQTH----VYDSTRINTSSQI------------DIERMKLQKESFDRI 169
++E ++ + L +Q H ++ + D+E D +
Sbjct: 69 IDEIVETVPLDLLQLHGDETPEFCRQLKRRYGLPVIKALRVRSAGDLEAAAAYYGDADGL 128
Query: 170 LLDAPCSGFG 179
LLDA G
Sbjct: 129 LLDAYVGLPG 138
>gnl|CDD|143498 cd06825, PLPDE_III_VanT, Type III Pyridoxal 5-phosphate
(PLP)-Dependent Enzymes, VanT and similar proteins.
This subfamily is composed of Enterococcus gallinarum
VanT and similar proteins. VanT is a membrane-bound
serine racemase (EC 5.1.1.18) that is essential for
vancomycin resistance in Enterococcus gallinarum. It
converts L-serine into its D-enantiomer (D-serine) for
peptidoglycan synthesis. The C-terminal region of this
protein contains a PLP-binding TIM-barrel domain
followed by beta-sandwich domain, which is homologous to
the fold type III PLP-dependent enzyme, bacterial
alanine racemase (AR). AR exists as homodimers with
active sites that lie at the interface between the TIM
barrel domain of one subunit and the beta-sandwich
domain of the other subunit. On the basis of this
similarity, it has been suggested that dimer formation
of VanT is required for its catalytic activity, and that
it catalyzes the racemization of serine in a
mechanistically similar manner to that of alanine by
bacterial AR. Some biochemical evidence indicates that
VanT also exhibits alanine racemase activity and plays a
role in the racemization of L-alanine. VanT contains a
unique N-terminal transmembrane domain, which may
function as an L-serine transporter. VanT serine
racemases are not related to eukaryotic serine
racemases, which are fold type II PLP-dependent enzymes.
Length = 368
Score = 28.1 bits (63), Expect = 9.6
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
Query: 101 THIALLMNDTG-TLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERM 159
H+ + DTG + +K L++S I +H+ S ++ DI
Sbjct: 117 VHLKV---DTGMHRLGESPEDIDSILAIYRLKNLKVSGIFSHLCVSDSLDED---DIAFT 170
Query: 160 KLQKESFDRILLDAPCSGFG 179
K Q FD++L D G
Sbjct: 171 KHQIACFDQVLADLKARGIE 190
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.138 0.416
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,089,025
Number of extensions: 1953374
Number of successful extensions: 1766
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1736
Number of HSP's successfully gapped: 55
Length of query: 397
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 298
Effective length of database: 6,546,556
Effective search space: 1950873688
Effective search space used: 1950873688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.8 bits)