RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17793
(397 letters)
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold,
structural genomics, riken structu genomics/proteomics
initiative; 1.27A {Methanocaldococcus jannaschii} PDB:
3a4t_A
Length = 274
Score = 220 bits (563), Expect = 6e-70
Identities = 79/247 (31%), Positives = 119/247 (48%), Gaps = 42/247 (17%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
+ Q++ S++ L+ + +LDMCAAPG K TH+A LM + GT++A++ SK R L+
Sbjct: 66 MPQSISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALK 125
Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMF--- 184
I ++ + + D + + + + FD+ILLDAPCSG +
Sbjct: 126 SNINRMGVLNTIIINADMRKYK-------DYLLKNEIFFDKILLDAPCSGNI---IKDKN 175
Query: 185 YNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
N + ++ IK + QK+L+ I LLKKDG LVY TCS+ VEEN
Sbjct: 176 RNVS-----EEDIKYCSLRQKELIDIG-----------IDLLKKDGELVYSTCSMEVEEN 219
Query: 245 EAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
E VI +IL + +VEL+ G+ K+ + R P + F
Sbjct: 220 EEVIKYILQKRNDVELIIIKANEFK-GINIKEGYIKG---TLRVFP-------PNE--PF 266
Query: 305 FICKLRK 311
FI KLRK
Sbjct: 267 FIAKLRK 273
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase,
structural genomics, structural genomics consortium,
SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Length = 309
Score = 211 bits (539), Expect = 6e-66
Identities = 64/255 (25%), Positives = 96/255 (37%), Gaps = 38/255 (14%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
ILQ+ S L LD PG V+D CAAPGNK +H+A L+ + G + A D R+ +
Sbjct: 85 ILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMA 144
Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP-M 183
+ + +S + D ++ + ILLD CSG G ++
Sbjct: 145 TLLARAGVSCCELAEEDFLAVS--------PSDPRYHEVHYILLDPSCSGSGMPSRQLEE 196
Query: 184 FYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEE 243
++ + A Q++ L F LVY TCSL EE
Sbjct: 197 PGAGT---PSPVRLHALAGFQQRALCHALTF------------PSLQRLVYSTCSLCQEE 241
Query: 244 NEAVIAWILHRHP-EVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTI 302
NE V+ L ++P L LP +GL+ R P T +
Sbjct: 242 NEDVVRDALQQNPGAFRLAPALPAWPHRGLS----TFPGAEHCLRASP------ETTLSS 291
Query: 303 GFFICKLRKKYGEAP 317
GFF+ + +
Sbjct: 292 GFFVAVIERVEVPRR 306
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF,
adoMet, MULT specific, methyltransferase, transferase;
HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A*
3m6u_A* 3m6x_A*
Length = 464
Score = 212 bits (542), Expect = 1e-64
Identities = 73/248 (29%), Positives = 102/248 (41%), Gaps = 34/248 (13%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
+Q + G LD +PG++VLD+ AAPG K TH+A M G L+A + RV L
Sbjct: 84 YIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLL 143
Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMF-YN 186
E +++ T + + F R+LLDAPCSG G MF +
Sbjct: 144 ENVERWGAPLAVTQ-APPRAL----------AEAFGTYFHRVLLDAPCSGEG---MFRKD 189
Query: 187 ANSFLNLD-KKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
+ + K A +QK LL LL G+LVY TC+ + EENE
Sbjct: 190 REAARHWGPSAPKRMAEVQKALLAQA-----------SRLLGPGGVLVYSTCTFAPEENE 238
Query: 246 AVIAWILHRHPEVELVQT-LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
V+A L HPE L L L G+ + R P + G
Sbjct: 239 GVVAHFLKAHPEFRLEDARLHPLFAPGVPEWGEGNPELLKTARL----WPHRLEGE--GH 292
Query: 305 FICKLRKK 312
F+ + RK+
Sbjct: 293 FLARFRKE 300
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog,
methyltransferase, structural genomics, NPPSFA; HET:
SFG; 2.55A {Pyrococcus horikoshii}
Length = 450
Score = 210 bits (536), Expect = 8e-64
Identities = 72/254 (28%), Positives = 111/254 (43%), Gaps = 59/254 (23%)
Query: 70 QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEET 129
Q S +A LD +PG+ V+D+ AAPG K TH+A LM + G + A D K R+ +L++
Sbjct: 244 QEEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDF 303
Query: 130 IKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---------- 179
+K++ + ++ V D+ + + +E D++LLDAPC+ G
Sbjct: 304 VKRMGIKIVKPLVKDARKAPE---------IIGEEVADKVLLDAPCTSSGTIGKNPELRW 354
Query: 180 -QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS 238
R KI + +Q++LL++ L+K G L+Y TCS
Sbjct: 355 RLRE------------DKINEMSQLQRELLESAA-----------RLVKPGGRLLYTTCS 391
Query: 239 LSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRN 298
+ EENE I W L+ HPE +LV L + M+ P +
Sbjct: 392 IFKEENEKNIRWFLNVHPEFKLVP---------LKSPYDPGFLEGTMR-----AWPHRHS 437
Query: 299 TDTIGFFICKLRKK 312
T GFF L K
Sbjct: 438 TI--GFFYALLEKS 449
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii}
SCOP: c.66.1.38
Length = 315
Score = 202 bits (517), Expect = 1e-62
Identities = 76/247 (30%), Positives = 107/247 (43%), Gaps = 36/247 (14%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
+Q S+ LD +PG+ V DM AAPG K +++A LM + G + A D + R+ +
Sbjct: 101 YIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETR 160
Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFY-N 186
+ +L + ++ S I FD+ILLDAPC+G G + N
Sbjct: 161 LNLSRLGVLNVILFHSSSLHI-----------GELNVEFDKILLDAPCTGSG---TIHKN 206
Query: 187 ANSFLNLD-KKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
N IK +Q +LL+ +LK GILVY TCSL EENE
Sbjct: 207 PERKWNRTMDDIKFCQGLQMRLLEKGLE-----------VLKPGGILVYSTCSLEPEENE 255
Query: 246 AVIAWILHRHPEVELV-QTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
VI W L VEL+ + + +L E + + L P T GF
Sbjct: 256 FVIQWALDNFD-VELLPLKYGEPALTNPFGIELSEEIKNARR-----LYPDVHETS--GF 307
Query: 305 FICKLRK 311
FI K+RK
Sbjct: 308 FIAKIRK 314
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif,
transferase; 2.28A {Enterococcus faecium}
Length = 456
Score = 205 bits (524), Expect = 5e-62
Identities = 62/253 (24%), Positives = 101/253 (39%), Gaps = 33/253 (13%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
Q +++ G +PG+KVLD+CAAPG K T +A M G L+ + R L
Sbjct: 88 YSQEPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILS 147
Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMF-YN 186
E I++ +S+ + + FDRI++DAPCSG G MF +
Sbjct: 148 ENIERWGVSNAIVTNHAPAELV----------PHFSGFFDRIVVDAPCSGEG---MFRKD 194
Query: 187 ANSFLNLD-KKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
N+ + Q+++L + I +LK G L+Y TC+ + EENE
Sbjct: 195 PNAIKEWTEESPLYCQKRQQEILSSA-----------IKMLKNKGQLIYSTCTFAPEENE 243
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
+I+W++ +P V + + + + R P + G F
Sbjct: 244 EIISWLVENYP-VTIEEIPLTQSVSSGRSEWGSVAGLEKTIRI----WPHKDQGE--GHF 296
Query: 306 ICKLRKKYGEAPE 318
+ KL
Sbjct: 297 VAKLTFHGQNQMH 309
>2frx_A Hypothetical protein YEBU; rossmann-type
S-adenosylmethionine-dependent methyltransfera domain;
2.90A {Escherichia coli}
Length = 479
Score = 202 bits (516), Expect = 1e-60
Identities = 67/274 (24%), Positives = 111/274 (40%), Gaps = 54/274 (19%)
Query: 63 DSSMGILQNLPSILAGHY---------------LDVQPGQKVLDMCAAPGNKLTHIALLM 107
+ L + L+G + D Q+V+D+ AAPG+K T I+ M
Sbjct: 80 NEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARM 139
Query: 108 NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFD 167
N+ G ++A + S RV L I + +S++ +D E FD
Sbjct: 140 NNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFG----------AAVPEMFD 189
Query: 168 RILLDAPCSGFGQRPMF-YNANSFLNLD-KKIKSYANIQKKLLQAVYRFVSLFDWQGIPL 225
ILLDAPCSG G + + ++ N + + A Q++L+ +
Sbjct: 190 AILLDAPCSGEG---VVRKDPDALKNWSPESNQEIAATQRELIDSA-----------FHA 235
Query: 226 LKKDGILVYCTCSLSVEENEAVIAWILHRHPE-VELVQTLPQLGMKGLAHKDLEAEDQAV 284
L+ G LVY TC+L+ EENEAV W+ +P+ VE + + ++
Sbjct: 236 LRPGGTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP-----GANKALTEEGF 290
Query: 285 MQRFGPPLIPTDRNTDTIGFFICKLRKKYGEAPE 318
+ + P + + GFF+ +LRK
Sbjct: 291 LH-----VFPQIYDCE--GFFVARLRKTQAIPAL 317
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet,
methyltransferase-fold, RNA-binding domain; 1.65A
{Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Length = 429
Score = 197 bits (503), Expect = 3e-59
Identities = 69/254 (27%), Positives = 103/254 (40%), Gaps = 66/254 (25%)
Query: 70 QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEET 129
Q+ + +L Q G+ +LD+CAAPG K THI + + ++A+D + R++++ +
Sbjct: 231 QDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDN 289
Query: 130 IKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---------- 179
+K+L + D + ++ FDRILLDAPCS G
Sbjct: 290 LKRLGMK-ATVKQGDGRYPSQ---------WCGEQQFDRILLDAPCSATGVIRRHPDIKW 339
Query: 180 -QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS 238
+R + I A +Q ++L A+ W P LK G LVY TCS
Sbjct: 340 LRRD------------RDIPELAQLQSEILDAI--------W---PHLKTGGTLVYATCS 376
Query: 239 LSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRN 298
+ EEN I L R + EL + +Q Q +P
Sbjct: 377 VLPEENSLQIKAFLQRTADAELC--------------ETGTPEQPGKQ-----NLPGAEE 417
Query: 299 TDTIGFFICKLRKK 312
D GFF KL KK
Sbjct: 418 GD--GFFYAKLIKK 429
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 52.0 bits (125), Expect = 5e-08
Identities = 29/188 (15%), Positives = 57/188 (30%), Gaps = 48/188 (25%)
Query: 81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQT 140
++ G VLD+ G L +++ ++ + G + A+D + V E + KL L +++
Sbjct: 33 FGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEV 92
Query: 141 HVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY 200
+ + ++ L + D I F L +
Sbjct: 93 L-----------KSEENKIPLPDNTVDFIF-----MAFTFH----------ELSEP---- 122
Query: 201 ANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVEL 260
K L+ + R + K L +E + E E+
Sbjct: 123 ----LKFLEELKR-----------VAKPFAYLA---IIDWKKEERDKGPPPEEVYSEWEV 164
Query: 261 VQTLPQLG 268
L G
Sbjct: 165 GLILEDAG 172
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.1 bits (129), Expect = 5e-08
Identities = 62/439 (14%), Positives = 122/439 (27%), Gaps = 150/439 (34%)
Query: 1 MRDIQS---------QCYCLWLDR-AGFVSVLRLPARQRPSLSIYCYALDILFRGVAVEI 50
+ ++Q+ C L R L SL + L E+
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT------PDEV 303
Query: 51 TNVLSQVPNVALDSSMGILQNLPS-ILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMND 109
++L + + LP +L + L + A L D
Sbjct: 304 KSLLLKYLDCRPQD-------LPREVLTTNPR-------RLSIIAE----SIRDGLATWD 345
Query: 110 TGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVY-------DSTRI---------NTSSQ 153
+ DK T +E ++ L+ + + ++ S I +
Sbjct: 346 NWKHVNCDKLT---TIIESSLNVLEPAEYR-KMFDRLSVFPPSAHIPTILLSLIWFDVIK 401
Query: 154 IDIERM--KLQKESFDRILLDA-PCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQA 210
D+ + KL K S L++ P P Y L L K+++ + + ++
Sbjct: 402 SDVMVVVNKLHKYS----LVEKQPKESTISIPSIY-----LELKVKLENEYALHRSIVDH 452
Query: 211 VYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMK 270
Y FD + D Y + H +K
Sbjct: 453 -YNIPKTFDSDDLIPPYLDQ---Y-------------FYSHIGHH-------------LK 482
Query: 271 GLAHKDLEAEDQAVMQ--RF--------GPPLIPTDRNTDTIGFFICKLRKKYGEAPEIY 320
+ H + + V RF + +T+ K Y Y
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL-----KFYKP----Y 533
Query: 321 I---HPH----LNDCIVIGPLLKLSQSVVHHP----VQIIVDQPCALAVLRGADVFAPGV 369
I P +N ++ L K+ ++++ ++I AL
Sbjct: 534 ICDNDPKYERLVNA--ILDFLPKIEENLICSKYTDLLRI------AL------------- 572
Query: 370 LAMPLGKNSYKTPYRRVQK 388
M + ++ +++VQ+
Sbjct: 573 --MAEDEAIFEEAHKQVQR 589
Score = 39.1 bits (90), Expect = 0.002
Identities = 35/247 (14%), Positives = 73/247 (29%), Gaps = 58/247 (23%)
Query: 155 DIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRF 214
D+ + L KE D I + + + G +F+ L K+ + +++L+ Y+F
Sbjct: 40 DMPKSILSKEEIDHI-IMSKDAVSGTLRLFW-----TLLSKQEEMVQKFVEEVLRINYKF 93
Query: 215 VSLFD-WQGIPLLKKDGILVYCTC-SLSVEENEAVIAWILHRHPEV-ELVQTLPQL---- 267
L + +Y +N+ + + R +L Q L +L
Sbjct: 94 --LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK 151
Query: 268 -----GMKG-----LAHKDLEA-EDQAVMQRFG-------------PPLIPTDRNTDTIG 303
G+ G +A L+ V + P +
Sbjct: 152 NVLIDGVLGSGKTWVA---LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK---- 204
Query: 304 FFICKLRKKYGEAPEIYIHPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGAD 363
+ ++ + + + L + L +L +S + L VL +
Sbjct: 205 -LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY---------ENCLLVLL--N 252
Query: 364 VFAPGVL 370
V
Sbjct: 253 VQNAKAW 259
Score = 32.9 bits (74), Expect = 0.23
Identities = 34/211 (16%), Positives = 76/211 (36%), Gaps = 52/211 (24%)
Query: 199 SYANIQKKLLQAVYRFVSLFDWQGI-----PLLKK---DGILVYCTCSLSVEENEAVIAW 250
Y +I A FV FD + + +L K D I++ S + W
Sbjct: 17 QYKDILSVFEDA---FVDNFDCKDVQDMPKSILSKEEIDHIIM----SKDAVSGTLRLFW 69
Query: 251 ILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLR 310
L E E+VQ ++ + + + + P + T +I +
Sbjct: 70 TLLSKQE-EMVQKF----VEEVLRINYKFLMSPIKTEQRQPSMMTRM-------YIEQRD 117
Query: 311 KKYGEAPEIYIHPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFAPG-- 368
+ Y + +++ +++ + P LKL Q+++ +P ++ G G
Sbjct: 118 RLYND-NQVFAKYNVSR---LQPYLKLRQALLE-------LRPAKNVLIDGV----LGSG 162
Query: 369 --VLAMPLGKNSYKTPYRRVQKTQNKQLYWV 397
+A+ + + +VQ + +++W+
Sbjct: 163 KTWVALDVCLSY------KVQCKMDFKIFWL 187
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI,
intermolecular contacts, R specificity, tetramer,
disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB:
3lga_A* 3lhd_C*
Length = 255
Score = 50.0 bits (119), Expect = 3e-07
Identities = 15/96 (15%), Positives = 34/96 (35%), Gaps = 11/96 (11%)
Query: 79 HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSI 138
Y + PG +++ G +A ++ G +++ + + E IK
Sbjct: 87 AYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDR 146
Query: 139 QTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAP 174
T + +++E+ D ++LD P
Sbjct: 147 VTIK-----------LKDIYEGIEEENVDHVILDLP 171
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus} PDB:
3lby_A*
Length = 185
Score = 46.4 bits (110), Expect = 3e-06
Identities = 26/184 (14%), Positives = 56/184 (30%), Gaps = 45/184 (24%)
Query: 83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHV 142
+ V+D GN A L + + A D + L +T ++L
Sbjct: 20 LDDESIVVDATMGNGN---DTAFLAGLSKKVYAFDVQEQA---LGKTSQRLS-------- 65
Query: 143 YDSTRINTSSQIDIERMKLQKESFDRI--LLDAPCSGFGQRPMFYNANSFLNLDKKIKSY 200
+ IE +L + + + + P +N + DK + +
Sbjct: 66 ----------DLGIENTELILDGHENLDHYVREPIRAA-----IFNLGYLPSADKSVITK 110
Query: 201 ANIQKKLLQAVYRFVSLFDWQGIPLLKKDGIL---VYCTCSLSVEENEAVIAWILHRHPE 257
+ + ++ + L+ G L +Y E +AV+ +++
Sbjct: 111 PHTTLEAIEKILD-----------RLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQR 159
Query: 258 VELV 261
V
Sbjct: 160 VFTA 163
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural
genomics, protein structure initiative; HET: SAM; 1.98A
{Mycobacterium tuberculosis} SCOP: c.66.1.13
Length = 280
Score = 46.7 bits (110), Expect = 5e-06
Identities = 17/96 (17%), Positives = 30/96 (31%), Gaps = 8/96 (8%)
Query: 79 HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSI 138
H D+ PG +VL+ A G + + G +I+ ++ +
Sbjct: 93 HEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPP 152
Query: 139 QTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAP 174
D+ +L S DR +LD
Sbjct: 153 DNW--------RLVVSDLADSELPDGSVDRAVLDML 180
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 46.4 bits (110), Expect = 5e-06
Identities = 27/222 (12%), Positives = 63/222 (28%), Gaps = 54/222 (24%)
Query: 76 LAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL 135
++ K+ D+ G + +A + G + +D + E K
Sbjct: 37 AVSFINELTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKANC 94
Query: 136 SSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDK 195
+ R+ ++ + Q E D I ++ + N+
Sbjct: 95 AD---------RVKG-ITGSMDNLPFQNEELDLI---------------WSEGAIYNIGF 129
Query: 196 KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGIL-VYCTCSLSVEENEAVIAWILHR 254
++ + + LKK G + V + E + + +
Sbjct: 130 ---------ERGMNEWSK-----------YLKKGGFIAVSEASWFTSERPAEIEDFWMDA 169
Query: 255 HPEV----ELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPL 292
+PE+ + + + G AH L + + + P
Sbjct: 170 YPEISVIPTCIDKMERAGYTPTAHFIL--PENCWTEHYFAPQ 209
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET: SAM;
2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 44.5 bits (105), Expect = 1e-05
Identities = 30/174 (17%), Positives = 55/174 (31%), Gaps = 37/174 (21%)
Query: 81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQT 140
+ V+ G V+D GN +A L+ + G + D IQ
Sbjct: 18 MFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFD--------------------IQD 57
Query: 141 HVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY 200
+T + I+R+ L K+ + C + + +N + D I +
Sbjct: 58 KAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCP---VKAVMFNLGYLPSGDHSISTR 114
Query: 201 ANIQKKLLQAVYRFVSLFDWQGIPLLKKDG---ILVYCTCSLSVEENEAVIAWI 251
+ L LL G +++Y EE E V+ ++
Sbjct: 115 PETTIQALSKAME-----------LLVTGGIITVVIYYGGDTGFEEKEKVLEFL 157
>1yb2_A Hypothetical protein TA0852; structural genomics,
methyltransferase, thermoplasma acidoph midwest center
for structural genomics, MCSG; 2.01A {Thermoplasma
acidophilum} SCOP: c.66.1.13
Length = 275
Score = 45.1 bits (106), Expect = 2e-05
Identities = 16/96 (16%), Positives = 37/96 (38%), Gaps = 11/96 (11%)
Query: 79 HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSI 138
++PG +L++ GN ++I +N GTL +++ + + K + + +
Sbjct: 104 MRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGN 163
Query: 139 QTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAP 174
+ DI + +D ++ D P
Sbjct: 164 VRTS----------RSDIADFI-SDQMYDAVIADIP 188
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.0 bits (106), Expect = 3e-05
Identities = 50/251 (19%), Positives = 78/251 (31%), Gaps = 94/251 (37%)
Query: 38 ALDILFR-GVAVEITNVLSQ--VPNVALDSSMGILQ-------NLPS-ILAGHYLDVQPG 86
A+ +LF GV PN +L S+ L+ +PS +L+ L +
Sbjct: 299 AITVLFFIGVR-------CYEAYPNTSLPPSI--LEDSLENNEGVPSPMLSISNLTQEQV 349
Query: 87 QKVLDMCAA--PGNKLTHIALLMND------TGTLIALDKSKPRVTKLEETIKKLQLSSI 138
Q ++ + P K I+L+ N +G +L L T++K + S
Sbjct: 350 QDYVNKTNSHLPAGKQVEISLV-NGAKNLVVSGPPQSL-------YGLNLTLRKAKAPSG 401
Query: 139 QTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQR-PMFYNANSFLNLDKKI 197
D +RI P F +R F N FL +
Sbjct: 402 L----DQSRI-------------------------P---FSERKLKFS--NRFLP----V 423
Query: 198 K-----SYANIQKKLLQAVYRFVSLFDWQGIPLLKKD-GILVYCT------CSLSVEENE 245
L+ A + KD I VY T LS +E
Sbjct: 424 ASPFHSHL------LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISE 477
Query: 246 AVIAWILHRHP 256
++ I+ R P
Sbjct: 478 RIVDCII-RLP 487
Score = 35.8 bits (82), Expect = 0.027
Identities = 38/267 (14%), Positives = 65/267 (24%), Gaps = 136/267 (50%)
Query: 11 LWLDRA--------GFVSVLRL----PA--------------RQRPSLSIYCYALD--IL 42
+W +RA GF S+L + P R+ S I+ +D +
Sbjct: 1645 VW-NRADNHFKDTYGF-SILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLK 1702
Query: 43 FRGVAVEITNVLSQV----PNVALDS-----------SMGILQNL--------PSILAGH 79
+ EI + L + ++L + AGH
Sbjct: 1703 TEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGH 1762
Query: 80 ----Y---------LDV---------------------QPGQKVLDMCAA-PG------- 97
Y + + + G+ M A PG
Sbjct: 1763 SLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFS 1822
Query: 98 ---------------NKLTHIALLMND---------TGTLIALDKSKPRVTKLEETIKKL 133
L I N G L ALD + + +
Sbjct: 1823 QEALQYVVERVGKRTGWLVEIV---NYNVENQQYVAAGDLRALD-------TVTNVLNFI 1872
Query: 134 QLSSIQTHVYDSTRINTSSQIDIERMK 160
+L I D + S + +E ++
Sbjct: 1873 KLQKI-----DIIELQKS--LSLEEVE 1892
Score = 34.6 bits (79), Expect = 0.060
Identities = 48/312 (15%), Positives = 95/312 (30%), Gaps = 94/312 (30%)
Query: 113 LIAL-DKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESF---DR 168
L L V L + + LS + D+ ++ T ++I L+ S
Sbjct: 173 LRDLYQTYHVLVGDLIKFSAET-LSELIRTTLDAEKVFTQG-LNILEW-LENPSNTPDKD 229
Query: 169 ILLDAPCS----GFGQRPMFYNANSFLNLD-----KKIKSYANIQKKLLQAVYRFVSLFD 219
LL P S G Q + L +K + L+ AV ++ D
Sbjct: 230 YLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAV--AIAETD 287
Query: 220 -WQGIPLLKKDGILVYCTCSLSVEENEAVIAWI-LHRH---PEVELVQTL---------- 264
W+ + + ++ V+ +I + + P L ++
Sbjct: 288 SWESF----------FVSVRKAIT----VLFFIGVRCYEAYPNTSLPPSILEDSLENNEG 333
Query: 265 ---PQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKKYGEAPEIYI 321
P L + L + ++ ++ K ++ I
Sbjct: 334 VPSPMLSISNLTQEQVQD-------------------------YVNKTNSHLPAGKQVEI 368
Query: 322 HPHL-N--DCIVI-GP---LLKLSQSVVHHPVQIIVDQ---PCALAVLRGADVFAPGVLA 371
L N +V+ GP L L+ ++ +DQ P + L+ ++ F P V +
Sbjct: 369 --SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP-VAS 425
Query: 372 MPLGKNSYKTPY 383
P + +
Sbjct: 426 -P-----FHSHL 431
Score = 29.2 bits (65), Expect = 3.2
Identities = 22/150 (14%), Positives = 46/150 (30%), Gaps = 49/150 (32%)
Query: 16 AG---FVSVLRLPARQRPSLSIYCYALDILFRG----VAVEITNV--------LSQVPNV 60
A S++ + R D L R +A+ V L V
Sbjct: 1774 ADVMSIESLVEV-VFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVER 1832
Query: 61 ALDSSMGILQ----NLPS---ILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTL 113
+ +++ N+ + + AG + VL+ KL I ++
Sbjct: 1833 VGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNF-----IKLQKIDII------- 1880
Query: 114 IALDKSKPRVTKLEETIKKLQLSSIQTHVY 143
+L+++ L L ++ H++
Sbjct: 1881 -----------ELQKS---LSLEEVEGHLF 1896
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus,
methyltransferase, adoMet, structural genomics; 1.80A
{Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB:
1wxw_A 2cww_A*
Length = 382
Score = 44.3 bits (105), Expect = 4e-05
Identities = 41/201 (20%), Positives = 77/201 (38%), Gaps = 47/201 (23%)
Query: 78 GHYLDVQP---------GQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
G YLD + G++ LD+ + G H+AL + +A+D S + + EE
Sbjct: 193 GAYLDQRENRLYMERFRGERALDVFSYAGGFALHLALGFREV---VAVDSSAEALRRAEE 249
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
+ L +++ ++ + + R++ + E FD ++LD P
Sbjct: 250 NARLNGLGNVRVLEANAFDL-------LRRLEKEGERFDLVVLDPP-------------- 288
Query: 189 SFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN---E 245
+F K ++ K++ + I LLK+ GIL +CS + E
Sbjct: 289 AFAKGKKDVERAYRAYKEVNL-----------RAIKLLKEGGILATASCSHHMTEPLFYA 337
Query: 246 AVIAWILHRHPEVELVQTLPQ 266
V H + +V+ Q
Sbjct: 338 MVAEAAQDAHRLLRVVEKRGQ 358
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural
genomics, PSI, protein structure initiative; 1.80A
{Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Length = 396
Score = 44.0 bits (104), Expect = 5e-05
Identities = 41/206 (19%), Positives = 78/206 (37%), Gaps = 49/206 (23%)
Query: 78 GHYLD-----------VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKL 126
G +LD VQPG +VLD+ G I + +I +DKS +
Sbjct: 199 GFFLDQRENRLALEKWVQPGDRVLDVFTYTGG--FAIHAAIAGADEVIGIDKSPRAIETA 256
Query: 127 EETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFY 185
+E K + ++ V + +E+++ + E FD ++LD P
Sbjct: 257 KENAKLNGVEDRMKFIVGSAFEE-------MEKLQKKGEKFDIVVLDPP----------- 298
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN- 244
++ +K L + + ++ G+ L+K GILV C+CS V+
Sbjct: 299 -------------AFVQHEKDLKAGLRAYFNVNF-AGLNLVKDGGILVTCSCSQHVDLQM 344
Query: 245 --EAVIAWILHRHPEVELVQTLPQLG 268
+ +IA +++++
Sbjct: 345 FKDMIIAAGAKAGKFLKMLEPYRTQA 370
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A*
3t7r_A* 3t7t_A*
Length = 267
Score = 43.3 bits (102), Expect = 7e-05
Identities = 27/205 (13%), Positives = 61/205 (29%), Gaps = 52/205 (25%)
Query: 82 DVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTH 141
++ + D+ G + +A + G + LD + ++ L +
Sbjct: 43 NLTEKSLIADIGCGTGGQTMVLAGHVT--GQVTGLDFLSGFIDIFNRNARQSGLQN---- 96
Query: 142 VYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYA 201
R+ ++ + + E D I ++ + N+
Sbjct: 97 -----RVTG-IVGSMDDLPFRNEELDLI---------------WSEGAIYNIGF------ 129
Query: 202 NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN-EAVIAWILHRHPEV-- 258
++ L ++ LKK G L CS +E + + + +PE+
Sbjct: 130 ---ERGLNEWRKY-----------LKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDT 175
Query: 259 --ELVQTLPQLGMKGLAHKDLEAED 281
V + + G +A L
Sbjct: 176 IPNQVAKIHKAGYLPVATFILPENC 200
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI,
protein structure initiative, joint center for structu
genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Length = 277
Score = 43.1 bits (101), Expect = 8e-05
Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 11/96 (11%)
Query: 79 HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSI 138
LDV+ G +++D G +A + +G + A +K + E + K L
Sbjct: 106 MMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIE- 164
Query: 139 QTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAP 174
+ ++ ++ D + LD P
Sbjct: 165 ----------RVTIKVRDISEGFDEKDVDALFLDVP 190
>3bkx_A SAM-dependent methyltransferase; YP_807781.1,
cyclopropane-fatty-acyl-phospholipid synthase-L protein,
methyltransferase domain; 1.85A {Lactobacillus casei}
Length = 275
Score = 40.8 bits (95), Expect = 5e-04
Identities = 15/99 (15%), Positives = 40/99 (40%), Gaps = 6/99 (6%)
Query: 81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQT 140
V+PG+K+L++ G+ +A + +G + +D + P T+ + +
Sbjct: 39 WQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDY-GAPLTLGQAWNHLLAG 97
Query: 141 HVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG 179
+ D ++ ++ + + + + FDR+
Sbjct: 98 PLGDRLTVHFNTNLSDDLGPIADQHFDRV-----VLAHS 131
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase,
S-adenosyl-methionine, 23S ribosoma transferase; HET:
SAM; 1.70A {Thermus thermophilus}
Length = 393
Score = 40.8 bits (96), Expect = 5e-04
Identities = 34/204 (16%), Positives = 71/204 (34%), Gaps = 55/204 (26%)
Query: 78 GHYLD-----------VQPGQKVLDMCAAPGNKLTHIALLMNDTGT-LIALDKSKPRVTK 125
G+YLD V+PG++VLD+ + G AL G +A+DK +
Sbjct: 196 GYYLDQRENRRLFEAMVRPGERVLDVYSYVG----GFALRAARKGAYALAVDKDLEALGV 251
Query: 126 LEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFY 185
L++ +L L + ++ + ++ + F +LLD P
Sbjct: 252 LDQAALRLGLR-VDIRHGEA----------LPTLRGLEGPFHHVLLDPP----------- 289
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN- 244
+ + +++ + L++ + + LL ++G L +CS +
Sbjct: 290 ---TLVKRPEELPAMKRHLVDLVR-----------EALRLLAEEGFLWLSSCSYHLRLED 335
Query: 245 --EAVIAWILHRHPEVELVQTLPQ 266
E + + + Q
Sbjct: 336 LLEVARRAAADLGRRLRVHRVTYQ 359
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI,
tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Length = 258
Score = 40.4 bits (94), Expect = 6e-04
Identities = 15/96 (15%), Positives = 35/96 (36%), Gaps = 10/96 (10%)
Query: 79 HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSI 138
LD+ PG +VL+ G +A + + G + + + + + E ++
Sbjct: 90 TLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVEN 149
Query: 139 QTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAP 174
+E +L++ ++D + LD
Sbjct: 150 VRFHLG----------KLEEAELEEAAYDGVALDLM 175
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 38.3 bits (89), Expect = 0.002
Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 12/94 (12%)
Query: 76 LAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL 135
L H PG KVL+ G T I N + ++D S + K E +K +
Sbjct: 28 LLHHDTVYPPGAKVLEAGCGIGA-QTVILAKNNPDAEITSIDISPESLEKARENTEKNGI 86
Query: 136 SSIQTHVYDSTRINTSSQIDIERMKLQKESFDRI 169
+++ Q +I + + SFD I
Sbjct: 87 KNVKFL-----------QANIFSLPFEDSSFDHI 109
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent
methyltransferase fold; 2.00A {Escherichia coli K12}
Length = 396
Score = 38.9 bits (91), Expect = 0.003
Identities = 34/204 (16%), Positives = 75/204 (36%), Gaps = 49/204 (24%)
Query: 78 GHYLDVQP----------GQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
G+YLD + ++VL+ + G ++ LM ++++D S+ +
Sbjct: 203 GYYLDQRDSRLATRRYVENKRVLNCFSYTGG--FAVSALMGGCSQVVSVDTSQEALDIAR 260
Query: 128 ETIK--KLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFY 185
+ ++ KL LS + D ++ + + + E FD I++D P
Sbjct: 261 QNVELNKLDLSKAEFVRDDVFKL-------LRTYRDRGEKFDVIVMDPP----------- 302
Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN- 244
F+ ++ K + I LL + GIL+ +CS + +
Sbjct: 303 ---KFVENKSQLMGACRGYKDINM-----------LAIQLLNEGGILLTFSCSGLMTSDL 348
Query: 245 --EAVIAWILHRHPEVELVQTLPQ 266
+ + + +V+ ++ Q
Sbjct: 349 FQKIIADAAIDAGRDVQFIEQFRQ 372
>2b78_A Hypothetical protein SMU.776; structure genomics,
methyltransferase, caries, structural genomics, unknown
function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9
c.66.1.51 PDB: 3ldf_A*
Length = 385
Score = 38.4 bits (90), Expect = 0.003
Identities = 34/204 (16%), Positives = 73/204 (35%), Gaps = 50/204 (24%)
Query: 78 GHYLD-----------VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKL 126
G +LD G+ VL++ + + +A M ++D +K
Sbjct: 194 GIFLDQRQVRNELINGSAAGKTVLNLFSYTAA-FS-VAAAMGGAMATTSVDLAKRSRALS 251
Query: 127 EETIK--KLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMF 184
+ L +++ Q V D + + ++D I++D P
Sbjct: 252 LAHFEANHLDMANHQLVVMDVFDY-------FKYARRHHLTYDIIIIDPP---------- 294
Query: 185 YNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS--LSVE 242
SF K++ S + KL++ QG+ +L ++G+++ T + ++V
Sbjct: 295 ----SFARNKKEVFSVSKDYHKLIR-----------QGLEILSENGLIIASTNAANMTVS 339
Query: 243 ENEAVIAW-ILHRHPEVELVQTLP 265
+ + I + +Q LP
Sbjct: 340 QFKKQIEKGFGKQKHTYLDLQQLP 363
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA
binding, structural genomics, BSGC structure funded by
NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB:
2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Length = 227
Score = 37.7 bits (87), Expect = 0.003
Identities = 21/121 (17%), Positives = 47/121 (38%), Gaps = 12/121 (9%)
Query: 75 ILAG-HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKL 133
I+ G ++PG+ VL + A G +H++ ++ G + ++ S + +L +++
Sbjct: 62 IMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE- 120
Query: 134 QLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNL 193
+I + D+T+ + D I D + + NA +L
Sbjct: 121 -RRNIVPILGDATKPEEYRALV--------PKVDVIFEDVAQPT-QAKILIDNAEVYLKR 170
Query: 194 D 194
Sbjct: 171 G 171
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 36.6 bits (85), Expect = 0.004
Identities = 28/196 (14%), Positives = 57/196 (29%), Gaps = 61/196 (31%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
L+ L + ++D G + L+ L +D + + +++E
Sbjct: 3 LERPEEYLP--NIFEGKKGVIVDYGCGNG---FYCKYLLEFATKLYCIDINVIALKEVKE 57
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
+ + ++ S D IL AN
Sbjct: 58 KFDSV-------------------ITLSDPKEIPDNSVDFILF---------------AN 83
Query: 189 SFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVI 248
SF ++D K + ++ V R +LK DG ++ +EN +
Sbjct: 84 SFHDMDDK--------QHVISEVKR-----------ILKDDGRVIIIDWR---KENTGIG 121
Query: 249 AWILHRHPEVELVQTL 264
+ R E + +
Sbjct: 122 PPLSIRMDEKDYMGWF 137
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB:
2gh1_A
Length = 284
Score = 37.6 bits (87), Expect = 0.005
Identities = 8/63 (12%), Positives = 19/63 (30%)
Query: 74 SILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKL 133
S L + ++D G + L+ + +D + + + E + L
Sbjct: 11 SFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL 70
Query: 134 QLS 136
Sbjct: 71 PYD 73
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann
superfamily, S-adenosyl-L-M (SAM) binding, nucleolus;
HET: SAM; 1.73A {Aeropyrum pernix}
Length = 233
Score = 37.4 bits (86), Expect = 0.005
Identities = 18/119 (15%), Positives = 41/119 (34%), Gaps = 11/119 (9%)
Query: 79 HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSI 138
L V+ G ++L + A G +H++ ++ G + ++ + + L ++ +I
Sbjct: 71 IELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRD--RRNI 128
Query: 139 QTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKI 197
+ D+ + E D + D + NA FL +
Sbjct: 129 FPILGDARFPEKYRHLV--------EGVDGLYADVAQPEQ-AAIVVRNARFFLRDGGYM 178
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 35.5 bits (82), Expect = 0.012
Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQ 139
L +P + + D+ G+ + L T + + S+ R ++ L +S
Sbjct: 21 LAPKPHETLWDIGGGSGS-IAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI 78
>3zv0_C H/ACA ribonucleoprotein complex subunit 4; cell cycle, RNP
assembly, X-linked dyskeratosis congenita; 2.80A
{Saccharomyces cerevisiae}
Length = 195
Score = 35.8 bits (82), Expect = 0.013
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 325 LNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFAPGVLAM 372
L I GPL L +V + +I+V AV GA + PG+L
Sbjct: 59 LKSYISSGPLETL---LVGYK-RIVVKDSAVNAVCYGAKLMIPGLLRY 102
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 36.2 bits (83), Expect = 0.015
Identities = 16/118 (13%), Positives = 38/118 (32%), Gaps = 18/118 (15%)
Query: 68 ILQNLPSILAGHYL---------DVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDK 118
IL ++ + + G VLD+ G + + L+ + G +I +D
Sbjct: 57 ILADIADEVLEKFYGCGSTLPADGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDM 116
Query: 119 SKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMK------LQKESFDRIL 170
++ + ++ + + R IE + + S D ++
Sbjct: 117 LDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKG---FIENLATAEPEGVPDSSVDIVI 171
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance,
transferase; HET: SAH; 1.48A {Escherichia coli} PDB:
2xva_A* 4dq0_A* 2i6g_A*
Length = 199
Score = 35.1 bits (81), Expect = 0.018
Identities = 19/105 (18%), Positives = 33/105 (31%), Gaps = 18/105 (17%)
Query: 81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTG-TLIALDKSKPRVTKLEETIKKLQLSSIQ 139
+ V K LD+ G +L + G + A DK+ + +E L ++
Sbjct: 28 VKVVKPGKTLDLGCGNG----RNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLH 83
Query: 140 THVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMF 184
T V D+ + +D I L F +
Sbjct: 84 TRVV-----------DLNNLTFD-RQYDFI-LSTVVLMFLEAKTI 115
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 35.5 bits (82), Expect = 0.020
Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 16/90 (17%)
Query: 81 LDVQPGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQ 139
+ + +VLD+ A G H AL I +D +K V ++ + +++
Sbjct: 17 AECRAEHRVLDIGAGAG----HTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVR 72
Query: 140 THVYDSTRINTSSQIDIERMKLQKESFDRI 169
Q E + +SFD I
Sbjct: 73 FQ-----------QGTAESLPFPDDSFDII 91
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics,
structural genomics consortium, SGC; HET: MTA; 1.82A
{Homo sapiens}
Length = 233
Score = 35.0 bits (80), Expect = 0.023
Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 11/116 (9%)
Query: 79 HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSI 138
+ ++PG KVL + AA G ++H++ ++ G + A++ S L KK ++I
Sbjct: 71 DQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKK--RTNI 128
Query: 139 QTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLD 194
+ D+ + + D I D R + NA++FL
Sbjct: 129 IPVIEDARHPHKYRML--------IAMVDVIFADVAQPD-QTRIVALNAHTFLRNG 175
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP:
c.66.1.41
Length = 260
Score = 35.2 bits (81), Expect = 0.025
Identities = 15/102 (14%), Positives = 31/102 (30%), Gaps = 21/102 (20%)
Query: 81 LDVQPGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQ 139
++ ++VLD+ G H+A ++A D ++ + I+ ++
Sbjct: 33 AALKGNEEVLDVATGGG----HVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVE 88
Query: 140 THVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQR 181
Q D E+M E F +
Sbjct: 89 YV-----------QGDAEQMPFTDERFHIV-----TCRIAAH 114
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock
proteins, 23S ribosomal RNA; HET: SAM; 1.50A
{Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Length = 180
Score = 34.4 bits (80), Expect = 0.030
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALD 117
+PG V+D+ AAPG ++ + G +IA D
Sbjct: 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACD 54
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing,
snoRNP, structural genomics, BSGC structure funded by
NIH; 1.60A {Methanocaldococcus jannaschii} SCOP:
c.66.1.3 PDB: 1g8s_A
Length = 230
Score = 34.7 bits (79), Expect = 0.031
Identities = 21/113 (18%), Positives = 44/113 (38%), Gaps = 12/113 (10%)
Query: 79 HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSI 138
+ ++ K+L + A+ G +H+A + D G + A++ + + +L + + +I
Sbjct: 68 KVMPIKRDSKILYLGASAGTTPSHVADIA-DKGIVYAIEYAPRIMRELLDACAE--RENI 124
Query: 139 QTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFL 191
+ D+ + + I E D I D + NA FL
Sbjct: 125 IPILGDANKPQEYANI--------VEKVDVIYEDVAQPNQA-EILIKNAKWFL 168
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 34.8 bits (80), Expect = 0.033
Identities = 36/204 (17%), Positives = 56/204 (27%), Gaps = 55/204 (26%)
Query: 81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTG-TLIALDKSKPRVTKLEETIKKLQLSSIQ 139
+++ KVLD+ + G +I G +D V E + +
Sbjct: 51 IELNENSKVLDIGSGLGGGCMYIN---EKYGAHTHGIDICSNIVNMANERVSGNNKIIFE 107
Query: 140 THVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKS 199
DI + + +FD I Y+ ++ L L + K
Sbjct: 108 -------------ANDILTKEFPENNFDLI---------------YSRDAILALSLENK- 138
Query: 200 YANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT------CSLSVEENEAVIAWILH 253
KL Q Y+ LK G L+ + E E V
Sbjct: 139 -----NKLFQKCYK-----------WLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYT 182
Query: 254 RHPEVELVQTLPQLGMKGLAHKDL 277
E L K + KDL
Sbjct: 183 LITVEEYADILTACNFKNVVSKDL 206
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase,
S-adenosylmethionine, structural GE NPPSFA; HET: SAM;
2.20A {Aquifex aeolicus}
Length = 248
Score = 33.8 bits (77), Expect = 0.072
Identities = 12/97 (12%), Positives = 32/97 (32%), Gaps = 13/97 (13%)
Query: 79 HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSI 138
L++ ++VL+ G L ++ + G + + + ++ +KK L
Sbjct: 85 LKLNLNKEKRVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFNLGKN 141
Query: 139 QTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPC 175
+D + ++ + F +D
Sbjct: 142 VKFF----------NVDFKDAEVPEGIFHAAFVDVRE 168
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 33.7 bits (77), Expect = 0.088
Identities = 30/209 (14%), Positives = 60/209 (28%), Gaps = 54/209 (25%)
Query: 76 LAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTG-TLIALDKSKPRVTKLEETIKKLQ 134
+Q K LD+ A G + G ++ L+ + + + EE +
Sbjct: 73 ELAMTGVLQRQAKGLDLGAGYGGAARFLV---RKFGVSIDCLNIAPVQNKRNEEYNNQAG 129
Query: 135 LSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLD 194
L+ D+ + + + S+D I ++ ++FL+
Sbjct: 130 LA-------DNITV---KYGSFLEIPCEDNSYDFI---------------WSQDAFLHSP 164
Query: 195 KKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHR 254
K K+ Q R +LK G++ +++ I IL R
Sbjct: 165 DK--------LKVFQECAR-----------VLKPRGVMAITDPMKEDGIDKSSIQPILDR 205
Query: 255 ------HPEVELVQTLPQLGMKGLAHKDL 277
+ G+ L
Sbjct: 206 IKLHDMGSLGLYRSLAKECGLVTLRTFSR 234
>3d79_A PUA domain, putative uncharacterized protein PH0734; unknown
function; 1.73A {Pyrococcus horikoshii}
Length = 179
Score = 32.9 bits (75), Expect = 0.091
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 341 VVHHPVQIIVDQPCALAVLRGADVFAPGVLAMP 373
+ P +++VD+ +L GADV APG++
Sbjct: 90 LRKWPRRVVVDEGAVPHILNGADVMAPGIVDAD 122
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA,
2'-O-methylation, coiled-coil, methyltransfer binding,
rRNA processing; HET: SAM; 2.60A {Sulfolobus
solfataricus} PDB: 3id5_B* 3pla_E*
Length = 232
Score = 33.5 bits (76), Expect = 0.093
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 74 SILAG-HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKK 132
+IL G ++ G KVL + AA G ++H++ ++ G ++ S V +L ++
Sbjct: 64 AILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR 123
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural
genomics, structural genomics consortium, SGC; HET: SAM;
1.70A {Plasmodium falciparum}
Length = 201
Score = 33.0 bits (76), Expect = 0.094
Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 19/103 (18%)
Query: 84 QPGQKVLDMCAAPG-------NKLTHIALLMNDTGTLIALDKSK----PRVTKLEETIKK 132
+ + +LD+ PG + N +I +DK P V ++ I K
Sbjct: 21 KKNKIILDIGCYPGSWCQVILER------TKNYKNKIIGIDKKIMDPIPNVYFIQGEIGK 74
Query: 133 LQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLD-AP 174
+++I+ Y N S ++ + LQ + D IL D A
Sbjct: 75 DNMNNIKNINYIDNMNNNSVDYKLKEI-LQDKKIDIILSDAAV 116
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural
genomics, PSI, protein structure initiative; HET: MSE;
1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Length = 187
Score = 32.5 bits (75), Expect = 0.14
Identities = 30/194 (15%), Positives = 59/194 (30%), Gaps = 70/194 (36%)
Query: 74 SILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTL------------IALDKSKP 121
+++ G Y D G LD+ + G +G L I ++K+
Sbjct: 37 NMI-GPYFD---GGMALDLYS--G------------SGGLAIEAVSRGMDKSICIEKNFA 78
Query: 122 RVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQR 181
+ ++E I + + V + +E+ +K FD +LLD P
Sbjct: 79 ALKVIKENIAITKEPE-KFEV-----RKMDANRALEQFYEEKLQFDLVLLDPP------- 125
Query: 182 PMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSV 241
YA K+ + + + L + + + C +V
Sbjct: 126 ------------------YA---KQEIVSQLEKMLERQL-----LTNEAV-IVCETDKTV 158
Query: 242 EENEAVIAWILHRH 255
+ E + R
Sbjct: 159 KLPETIGTLKKTRE 172
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet,
methyltransferase fold, structura genomics, transferase;
HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Length = 207
Score = 32.4 bits (73), Expect = 0.19
Identities = 18/132 (13%), Positives = 46/132 (34%), Gaps = 21/132 (15%)
Query: 86 GQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDS 145
G+ V D+ A G L++ ALL+ +I ++ K V L E + + +
Sbjct: 50 GKVVADLGAGTG-VLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEFKG---------- 97
Query: 146 TRINTSSQIDIERMKLQK--ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANI 203
+ + + + D ++++ P + + + S
Sbjct: 98 -------KFKVFIGDVSEFNSRVDIVIMNPPFGSQRKHADRPFLLKAFEISDVVYSIHLA 150
Query: 204 QKKLLQAVYRFV 215
+ ++ + + +F
Sbjct: 151 KPEVRRFIEKFS 162
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase,
PSI, protei structure initiative; HET: MSE; 2.05A
{Escherichia coli} SCOP: c.66.1.46
Length = 202
Score = 31.8 bits (73), Expect = 0.23
Identities = 21/194 (10%), Positives = 48/194 (24%), Gaps = 74/194 (38%)
Query: 74 SILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTL------------IALDKSKP 121
+ L + + LD A G +G L ++ +
Sbjct: 47 NWL-APVIV---DAQCLDCFA--G------------SGALGLEALSRYAAGATLIEMDRA 88
Query: 122 RVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQR 181
+L + + L+ + + ++ + + + + +D P
Sbjct: 89 VSQQLIKNLATLKAGNARVVNSNAMSF----------LAQKGTPHNIVFVDPP------- 131
Query: 182 PMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSV 241
+ + LL+ + W L + L+Y +
Sbjct: 132 ------------------FR---RGLLEETINLLEDNGW-----LADEA-LIYVESEVEN 164
Query: 242 EENEAVIAWILHRH 255
W LHR
Sbjct: 165 GLPTVPANWSLHRE 178
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 32.1 bits (73), Expect = 0.24
Identities = 14/89 (15%), Positives = 31/89 (34%), Gaps = 13/89 (14%)
Query: 83 VQPGQKVLDMCAAPGNKLTHIALLMNDTG-TLIALDKSKPRVTKLEETIKKLQLSSIQTH 141
+Q ++LD+ G I+L + G ++ +D + E I+ + ++
Sbjct: 28 LQEDDEILDIGCGSGK----ISLELASKGYSVTGIDIN-------SEAIRLAETAARSPG 76
Query: 142 VYDSTRINTS-SQIDIERMKLQKESFDRI 169
+ T + + SFD
Sbjct: 77 LNQKTGGKAEFKVENASSLSFHDSSFDFA 105
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted
transferase, predicted O-methyltransferase, PFAM
PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Length = 260
Score = 32.2 bits (73), Expect = 0.25
Identities = 17/165 (10%), Positives = 47/165 (28%), Gaps = 23/165 (13%)
Query: 74 SILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLM---NDTGTLIALDKSKPRVTKLEETI 130
++L + ++ D+ A G + + + + ++S+ ++
Sbjct: 25 AMLLASLVADDRACRIADLGAGAG----AAGMAVAARLEKAEVTLYERSQEMAEFARRSL 80
Query: 131 KKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSF 190
+ ++ + T L E F ++++ P + +A
Sbjct: 81 ELPDNAAFSARIEVLEADVTLRAKARVEAGLPDEHFHHVIMNPP---------YNDAGDR 131
Query: 191 LNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC 235
D + + L + R S ++ G L
Sbjct: 132 RTPDALKAEAHAMTEGLFEDWIRTASA-------IMVSGGQLSLI 169
>1q7h_A Conserved hypothetical protein; structural genomics, MCSG, PSI, PR
structure initiative; 2.10A {Thermoplasma acidophilum
dsm 1728} SCOP: b.122.1.1 d.17.6.2
Length = 153
Score = 31.3 bits (71), Expect = 0.25
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 348 IIVDQPCALAVLRGADVFAPGVLAMP 373
+ VD+ +L G+D+FAPG+++M
Sbjct: 73 VTVDEGAEPHILNGSDLFAPGIVSMD 98
>3r90_A Malignant T cell-amplified sequence 1; structural genomics
consortium, surface entropy reduction, S binding
protein; 1.70A {Homo sapiens}
Length = 188
Score = 31.5 bits (71), Expect = 0.28
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 332 GPLLKLSQSVVHHPV---QIIVDQPCALAVLRGADVFAPGVLAMP 373
GP + + +P VD+ VL GA++ PG+ +
Sbjct: 76 GPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPG 120
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 31.8 bits (72), Expect = 0.30
Identities = 36/238 (15%), Positives = 75/238 (31%), Gaps = 62/238 (26%)
Query: 83 VQPGQKVLDMCAAPGNKLTHIALLMNDTG-TLIALDKSKPRVTKLEETIKKLQLSSIQTH 141
V+ +VLD+ G + ++ TG + +D S+ + K +E + LS I+
Sbjct: 51 VKKEAEVLDVGCGDG----YGTYKLSRTGYKAVGVDISEVMIQKGKERGEGPDLSFIKG- 105
Query: 142 VYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYA 201
D+ + + E F+ I+ NS ++ +++
Sbjct: 106 -------------DLSSLPFENEQFEAIM---------------AINSLEWTEEPLRALN 137
Query: 202 NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEV--- 258
I R +LK DG + + E + +
Sbjct: 138 EI--------KR-----------VLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTM 178
Query: 259 ---ELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKKY 313
E Q + + G K + + + V ++ L TD ++ L++
Sbjct: 179 MPWEFEQLVKEQGFKVVDGIGV--YKRGVNEKMLGQL-STDLQQSLTFLWVFMLKRHK 233
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 31.6 bits (72), Expect = 0.39
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTK 125
L+ QPG+ +LD+ G LT + ++ D + + K
Sbjct: 53 LNPQPGEFILDLGCGTGQ-LT--EKIAQSGAEVLGTDNAATMIEK 94
>2cx0_A Hypothetical protein APE0525; PUA domain, structural genomics,
NPPSFA, national project on structural and functional
analyses; 1.80A {Aeropyrum pernix} SCOP: b.122.1.1
d.17.6.4 PDB: 2cx1_A* 1zs7_A
Length = 187
Score = 31.0 bits (70), Expect = 0.48
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 348 IIVDQPCALAVLRGADVFAPGVLAMP 373
++VD+ A+A+ +GA + PGV+ +
Sbjct: 95 VLVDKGAAIALAKGAHLMIPGVVGVE 120
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding
motif, RNA binding protein; HET: SAM; 2.90A
{Archaeoglobus fulgidus} SCOP: c.66.1.3
Length = 210
Score = 31.1 bits (70), Expect = 0.48
Identities = 18/58 (31%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 75 ILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKK 132
IL GH L ++ ++VL + AA G ++H+A ++++ G + A++ S KL E +++
Sbjct: 47 ILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDE-GIIYAVEYSAKPFEKLLELVRE 103
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 31.3 bits (71), Expect = 0.50
Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 14/92 (15%)
Query: 79 HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTG-TLIALDKSKPRVTKLEETIKKLQLSS 137
LDV+ G +VLD+ G +A + + S+P+V + L+
Sbjct: 55 ALLDVRSGDRVLDVGCGIGKPAVRLA---TARDVRVTGISISRPQVNQANARATAAGLA- 110
Query: 138 IQTHVYDSTRINTSSQIDIERMKLQKESFDRI 169
+ S D + + SFD +
Sbjct: 111 ------NRVTF---SYADAMDLPFEDASFDAV 133
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.67
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 19/43 (44%)
Query: 120 KPRVTKLEETIKKLQLSSIQTHVY--DST---RINTSSQIDIE 157
K + KL+ ++K +Y DS I + +E
Sbjct: 19 KQALKKLQASLK----------LYADDSAPALAIKAT----ME 47
>2esr_A Methyltransferase; structural genomics, hypothetical protein,
streptococcus PYO PSI, protein structure initiative;
HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Length = 177
Score = 29.8 bits (68), Expect = 0.88
Identities = 27/195 (13%), Positives = 63/195 (32%), Gaps = 75/195 (38%)
Query: 74 SILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTL------------IALDKSKP 121
+++ G Y + G +VLD+ A G +G L + ++K++
Sbjct: 24 NMI-GPYFN---GGRVLDLFA--G------------SGGLAIEAVSRGMSAAVLVEKNRK 65
Query: 122 RVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIER-MKLQKESFDRILLDAPCSGFGQ 180
+++ I + + + + +++ ER + FD + LD P
Sbjct: 66 AQAIIQDNIIMTKAEN-RFTLL---------KMEAERAIDCLTGRFDLVFLDPP------ 109
Query: 181 RPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLS 240
YA K+ + A ++ + L + + V C +
Sbjct: 110 -------------------YA---KETIVATIEALAAKNL-----LSEQVM-VVCETDKT 141
Query: 241 VEENEAVIAWILHRH 255
V + + + +
Sbjct: 142 VLLPKEIATLGIWKE 156
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural
genomics, structural genomics consortium, SGC; HET:
SAM; 1.76A {Homo sapiens}
Length = 196
Score = 29.8 bits (68), Expect = 0.99
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 84 QPGQKVLDMCAAPG 97
+PG +VLD AAPG
Sbjct: 21 RPGLRVLDCGAAPG 34
>1ws6_A Methyltransferase; structural genomics, riken structural
genomics/proteomics initiative, RSGI; 2.50A {Thermus
thermophilus} SCOP: c.66.1.46
Length = 171
Score = 29.8 bits (68), Expect = 1.0
Identities = 17/112 (15%), Positives = 31/112 (27%), Gaps = 36/112 (32%)
Query: 74 SILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTL-----------IALDKSKPR 122
L Y + LD A G +G + + ++K
Sbjct: 33 DYLRLRYPR---RGRFLDPFA--G------------SGAVGLEAASEGWEAVLVEKDPEA 75
Query: 123 VTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAP 174
V L+E +++ L + + + K Q E F + P
Sbjct: 76 VRLLKENVRRTGLGA-RVVALPVEVF-------LPEAKAQGERFTVAFMAPP 119
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division,
structural genomics, protein structure initiative, PSI;
HET: SAM; 1.45A {Thermoplasma volcanium}
Length = 191
Score = 29.4 bits (67), Expect = 1.4
Identities = 4/14 (28%), Positives = 10/14 (71%)
Query: 84 QPGQKVLDMCAAPG 97
+ G V+++ ++PG
Sbjct: 24 RKGDAVIEIGSSPG 37
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 29.5 bits (66), Expect = 1.4
Identities = 22/153 (14%), Positives = 51/153 (33%), Gaps = 49/153 (32%)
Query: 82 DVQPGQKVLDMCAAPGNKLTHIALLMNDTG-TLIALDKSKPRVTKLEETIKKLQLSSIQT 140
++ KVLD+ G + L+ D G ++ +D S+ + K E K + +++
Sbjct: 35 YMKKRGKVLDLACGVG----GFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRES-NVEF 89
Query: 141 HVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY 200
D ++ + ++FD + +S ++ +
Sbjct: 90 I-----------VGDARKLSFEDKTFDYV---------------IFIDSIVHFEPLEL-- 121
Query: 201 ANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILV 233
++ + V R +LK G +
Sbjct: 122 ----NQVFKEVRR-----------VLKPSGKFI 139
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium,
SGC, methyltransferase, LOC84291, transferase; HET: SAH;
1.30A {Homo sapiens}
Length = 215
Score = 29.2 bits (65), Expect = 1.7
Identities = 19/129 (14%), Positives = 47/129 (36%), Gaps = 20/129 (15%)
Query: 82 DVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTH 141
+++P ++L + GN L + + ++D S V ++ + +
Sbjct: 39 ELRPEDRILVLGC--GNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVPQLRWE-- 94
Query: 142 VYDSTRINTSSQIDIERMKLQKESFDRIL----LDAPCSGFGQRPMFYNANSFLNLDKKI 197
+D+ ++ SFD +L LDA +G + P ++ +D+ +
Sbjct: 95 -----------TMDVRKLDFPSASFDVVLEKGTLDALLAG-ERDPWTVSSEGVHTVDQVL 142
Query: 198 KSYANIQKK 206
+ +
Sbjct: 143 SEVSRVLVP 151
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin
metabolism, S-adenosyl-methionine; 1.80A {Geobacter
metallireducens}
Length = 204
Score = 29.1 bits (65), Expect = 2.0
Identities = 11/59 (18%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQ 139
L +Q + D+ A + + LM + G + AL+++ + + + +KK ++
Sbjct: 36 LRLQDDLVMWDIGAGSASVSIEASNLMPN-GRIFALERNPQYLGFIRDNLKKFVARNVT 93
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 29.3 bits (65), Expect = 2.1
Identities = 7/55 (12%), Positives = 17/55 (30%)
Query: 83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS 137
++PG V + ++L + L+ +D + L+
Sbjct: 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAG 170
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP
binding, binding, capsid protein; HET: GTA SAH; 1.45A
{Yellow fever virus} PDB: 3evb_A* 3evc_A* 3evd_A*
3eve_A* 3eva_A*
Length = 277
Score = 28.8 bits (64), Expect = 3.1
Identities = 15/99 (15%), Positives = 29/99 (29%), Gaps = 21/99 (21%)
Query: 83 VQPGQKVLDMCAAPGNKLTHIALLMN---DTGTLIALDKSKPRVTKLEETIKKLQLSSIQ 139
V+ +V+D+ G + A G + D E +Q
Sbjct: 72 VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRD--------GHEKPMN-----VQ 118
Query: 140 THVYDSTRINTSSQIDIERMKLQKESFDRILLD-APCSG 177
+ ++ + I +L+ D +L D S
Sbjct: 119 SLGWNIITFKDKTDI----HRLEPVKCDTLLCDIGESSS 153
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 28.8 bits (64), Expect = 3.1
Identities = 24/156 (15%), Positives = 58/156 (37%), Gaps = 35/156 (22%)
Query: 79 HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTG-TLIALDKSKPRVTKLEETIKKLQLSS 137
L +VLD+ G ++++ + G ++ ++D S L+ +K+
Sbjct: 51 GLLRQHGCHRVLDVACGTGV----DSIMLVEEGFSVTSVDASDKM---LKYALKERWNRR 103
Query: 138 IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKI 197
+ +D I ++ + +++ + FD ++ C G NSF +L
Sbjct: 104 KEPA-FDKWVIEEANWLTLDKDVPAGDGFDAVI----CLG----------NSFAHLPDSK 148
Query: 198 KSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILV 233
+ + L+ + +++ G+LV
Sbjct: 149 GDQSE-HRLALKNIAS-----------MVRPGGLLV 172
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 28.3 bits (63), Expect = 4.4
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKS 119
L++ G + D+ A G + L N + A++ S
Sbjct: 30 LNLPKGSVIADIGAGTG-GYS--VALANQGLFVYAVEPS 65
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 28.2 bits (62), Expect = 5.2
Identities = 13/93 (13%), Positives = 29/93 (31%), Gaps = 14/93 (15%)
Query: 81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQT 140
+ G++ + + P LT I L + ++ + I+ L + +
Sbjct: 118 GRFRRGERAVFIGGGPLP-LTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNV 176
Query: 141 HVYDSTRINTSSQIDIERMKLQKESFDRILLDA 173
D T + FD +++ A
Sbjct: 177 ITGDET-------------VIDGLEFDVLMVAA 196
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET:
PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 27.9 bits (62), Expect = 5.2
Identities = 14/93 (15%), Positives = 31/93 (33%), Gaps = 16/93 (17%)
Query: 76 LAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTG-TLIALDKSKPRVTKLEETIKKLQ 134
+ + + VLD A + + G ++ S ++ K E ++
Sbjct: 14 FLKYCNESNLDKTVLDCGAGGD---LPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENN 70
Query: 135 LSSIQTHVYDSTRINTSSQIDIERMKLQKESFD 167
++N S+ DI ++ + ES
Sbjct: 71 F-----------KLNI-SKGDIRKLPFKDESMS 91
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117,
NESG, structural genomics, PSI-2, protein structure
initiative; 2.25A {Corynebacterium glutamicum}
Length = 221
Score = 27.7 bits (62), Expect = 6.5
Identities = 9/72 (12%), Positives = 23/72 (31%), Gaps = 9/72 (12%)
Query: 103 IALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERM-KL 161
I + D TL +D + + ++ + R+ ++ M +L
Sbjct: 74 ILNGLADNTTLTCIDPESEHQRQAKALFRE---AGYSPS-----RVRFLLSRPLDVMSRL 125
Query: 162 QKESFDRILLDA 173
+S+ +
Sbjct: 126 ANDSYQLVFGQV 137
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans
agrobacterium tumefaciens, structural genomics, PSI-2;
HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Length = 259
Score = 27.5 bits (61), Expect = 6.9
Identities = 7/45 (15%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
Query: 81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTK 125
+ ++ D+ PGN T + + +D + K
Sbjct: 29 VPLERVLNGYDLGCGPGN-STELLTDRYGVNVITGIDSDDDMLEK 72
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET:
SAH; 3.10A {Arabidopsis thaliana}
Length = 950
Score = 27.9 bits (61), Expect = 7.1
Identities = 13/92 (14%), Positives = 25/92 (27%), Gaps = 5/92 (5%)
Query: 80 YLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQ 139
++ ++D G+ L + T+I +D S L K L +
Sbjct: 716 HIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKG---LARAAKMLHVKLN- 771
Query: 140 THVYDSTRINTSSQIDIERMKLQKESFDRILL 171
+ + T I + D
Sbjct: 772 -KEACNVKSATLYDGSILEFDSRLHDVDIGTC 802
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 27.5 bits (61), Expect = 8.2
Identities = 23/156 (14%), Positives = 46/156 (29%), Gaps = 49/156 (31%)
Query: 79 HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTG-TLIALDKSKPRVTKLEETIKKLQLSS 137
+ ++VLD+ G L + + G ++ LD + + K+ L
Sbjct: 35 KEDAKREVRRVLDLACGTGI----PTLELAERGYEVVGLDLHEEMLRVARRKAKERNL-- 88
Query: 138 IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKI 197
+I D+ + K FD + MF++ + + +
Sbjct: 89 ---------KIEFLQG-DVLEIAF-KNEFDAVT------------MFFSTIMYFDEED-- 123
Query: 198 KSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILV 233
+KL V LK G+ +
Sbjct: 124 ------LRKLFSKVAE-----------ALKPGGVFI 142
>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex,
box H/ACA, snoRNP, pseudouridine synthase, RNA
modification; 1.95A {Methanocaldococcus jannaschii}
SCOP: b.122.1.1 d.265.1.2
Length = 357
Score = 27.3 bits (61), Expect = 9.6
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 334 LLKLSQSVVHHPVQIIVDQPCALAVLRGADVFAPGVLAMPLG 375
+ + + H +++V A+ GADV+ G+ + G
Sbjct: 259 IKPMEYGLRHLK-KVVVKDSAVDAICHGADVYVRGIAKLSKG 299
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA
PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Length = 375
Score = 27.4 bits (60), Expect = 9.7
Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 11/56 (19%)
Query: 83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSK--------PRVTKLEETI 130
+ G +D+ A PG L+ + ++D +VT L E
Sbjct: 209 LANGMWAVDLGACPGGWT---YQLVKRNMWVYSVDNGPMAQSLMDTGQVTWLREDG 261
>1vjf_A DNA-binding protein, putative; structural genomics, joint center
for S genomics, JCSG, protein structure initiative, PSI;
HET: MSE; 1.62A {Caulobacter crescentus CB15} SCOP:
d.116.1.1
Length = 180
Score = 26.9 bits (59), Expect = 9.8
Identities = 13/98 (13%), Positives = 28/98 (28%), Gaps = 10/98 (10%)
Query: 266 QLGMKGLAHKDLEAEDQAVMQRFG---PPLIPTDRNTDTIGFFICKLRKKYGEAPEIYIH 322
+G L+ E + + G + D + F + K + H
Sbjct: 87 VIGSGRLSFGPQEMMLETLGVTPGSVTAFGLINDTEKR-VRFVLDKALADS---DPVNFH 142
Query: 323 PHLNDC-IVIGP--LLKLSQSVVHHPVQIIVDQPCALA 357
P ND + L + ++ P+ + +
Sbjct: 143 PLKNDATTAVSQAGLRRFLAALGVEPMIVDFAAMEVVG 180
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.416
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,953,210
Number of extensions: 354274
Number of successful extensions: 1049
Number of sequences better than 10.0: 1
Number of HSP's gapped: 996
Number of HSP's successfully gapped: 95
Length of query: 397
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 301
Effective length of database: 4,021,377
Effective search space: 1210434477
Effective search space used: 1210434477
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.6 bits)