RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17793
(397 letters)
>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 313
Score = 93.6 bits (231), Expect = 4e-22
Identities = 69/243 (28%), Positives = 99/243 (40%), Gaps = 30/243 (12%)
Query: 69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
+Q S+ LD +PG+ V DM AAPG K +++A LM + G + A D + R+ +
Sbjct: 100 IQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRL 159
Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
+ +L + ++ S I FD+ILLDAPC+G G
Sbjct: 160 NLSRLGVLNVILFHSSSLHIGE-----------LNVEFDKILLDAPCTGSGTIHKNPER- 207
Query: 189 SFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVI 248
N ++ +G+ +LK GILVY TCSL EENE VI
Sbjct: 208 -----------KWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVI 256
Query: 249 AWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICK 308
W L L + + +L E + + L P T GFFI K
Sbjct: 257 QWALDNFDVELLPLKYGEPALTNPFGIELSEEIKNARR-----LYPDVHETS--GFFIAK 309
Query: 309 LRK 311
+RK
Sbjct: 310 IRK 312
>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit
methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 284
Score = 87.8 bits (216), Expect = 2e-20
Identities = 63/242 (26%), Positives = 99/242 (40%), Gaps = 44/242 (18%)
Query: 70 QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEET 129
Q+ + +L Q G+ +LD+CAAPG K THI + + +A+D + R++++ +
Sbjct: 87 QDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQV-VAVDIDEQRLSRVYDN 145
Query: 130 IKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANS 189
+K+L + + ++ FDRILLDAPCS G +
Sbjct: 146 LKRLGMKATVKQGDGRYPSQ----------WCGEQQFDRILLDAPCSATGVIRRHPDIKW 195
Query: 190 FLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIA 249
D+ I A +Q ++L A++ + K G LVY TCS+ EEN I
Sbjct: 196 LRR-DRDIPELAQLQSEILDAIWPHL-----------KTGGTLVYATCSVLPEENSLQIK 243
Query: 250 WILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKL 309
L R + EL + ++ G +P D GFF KL
Sbjct: 244 AFLQRTADAELC-------------------ETGTPEQPGKQNLPGAEEGD--GFFYAKL 282
Query: 310 RK 311
K
Sbjct: 283 IK 284
>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId:
9606]}
Length = 293
Score = 87.8 bits (216), Expect = 3e-20
Identities = 62/245 (25%), Positives = 91/245 (37%), Gaps = 30/245 (12%)
Query: 68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
ILQ+ S L LD PG V+D CAAPGNK +H+A L+ + G + A D R+ +
Sbjct: 77 ILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMA 136
Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNA 187
+ + +S + D ++ + ILLD CSG
Sbjct: 137 TLLARAGVSCCELAEEDFLAVS--------PSDPRYHEVHYILLDPSCSGS--------- 179
Query: 188 NSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
+ + L A+ F + LVY TCSL EENE V
Sbjct: 180 -GMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALT-FPSLQRLVYSTCSLCQEENEDV 237
Query: 248 IAWILHRHP-EVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFI 306
+ L ++P L LP +GL+ R P T + GFF+
Sbjct: 238 VRDALQQNPGAFRLAPALPAWPHRGLS----TFPGAEHCLRASP------ETTLSSGFFV 287
Query: 307 CKLRK 311
+ +
Sbjct: 288 AVIER 292
>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 324
Score = 56.0 bits (134), Expect = 2e-09
Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 2/98 (2%)
Query: 79 HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSI 138
+D+ PG VL+ + G ++ + G +I+ + K ++ K + S
Sbjct: 92 SMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWK 151
Query: 139 QTHVYDSTRINTSSQIDIER--MKLQKESFDRILLDAP 174
+HV + DI ++ +FD + LD
Sbjct: 152 LSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDML 189
>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle
and C-terminal domains {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 324
Score = 54.5 bits (130), Expect = 6e-09
Identities = 38/185 (20%), Positives = 68/185 (36%), Gaps = 36/185 (19%)
Query: 83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHV 142
VQPG +VLD+ G I + +I +DKS + +E K + +
Sbjct: 143 VQPGDRVLDVFTYTGGFA--IHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFI 200
Query: 143 YDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYAN 202
S +E+++ + E FD ++LD P + K +K+
Sbjct: 201 VGSAFEE------MEKLQKKGEKFDIVVLDPPAFVQHE--------------KDLKAGLR 240
Query: 203 IQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN---EAVIAWILHRHPEVE 259
+ A L+K GILV C+CS V+ + +IA ++
Sbjct: 241 AYFNVNFAGLN-----------LVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKFLK 289
Query: 260 LVQTL 264
+++
Sbjct: 290 MLEPY 294
>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle
and C-terminal domains {Thermus thermophilus [TaxId:
274]}
Length = 318
Score = 53.3 bits (127), Expect = 1e-08
Identities = 39/210 (18%), Positives = 76/210 (36%), Gaps = 38/210 (18%)
Query: 60 VALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKS 119
V L + L Y++ G++ LD+ + G H+AL + +A+D S
Sbjct: 120 VDLRAGQKTGAYLDQRENRLYMERFRGERALDVFSYAGGFALHLALGFREV---VAVDSS 176
Query: 120 KPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG 179
+ + EE + L +++ ++ + R++ + E FD ++LD P G
Sbjct: 177 AEALRRAEENARLNGLGNVRVLEANAFDLLR-------RLEKEGERFDLVVLDPPAFAKG 229
Query: 180 QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSL 239
++ + K++ + LLK+ GIL +CS
Sbjct: 230 KKDVER--------------AYRAYKEVNLRAIK-----------LLKEGGILATASCSH 264
Query: 240 SVEEN---EAVIAWILHRHPEVELVQTLPQ 266
+ E V H + +V+ Q
Sbjct: 265 HMTEPLFYAMVAEAAQDAHRLLRVVEKRGQ 294
>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 209
Score = 42.0 bits (98), Expect = 4e-05
Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 75 ILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIK 131
IL GH L ++ ++VL + AA G ++H+A ++++ + A++ S KL E ++
Sbjct: 46 ILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEG-IIYAVEYSAKPFEKLLELVR 101
>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 227
Score = 41.2 bits (96), Expect = 9e-05
Identities = 17/113 (15%), Positives = 39/113 (34%), Gaps = 11/113 (9%)
Query: 79 HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSI 138
++PG+ VL + A G +H++ ++ G + ++ S + +L +++ +
Sbjct: 67 KNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVP 126
Query: 139 QTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFL 191
E + D I D + + NA +L
Sbjct: 127 ILGDAT----------KPEEYRALVPKVDVIFEDVAQPTQ-AKILIDNAEVYL 168
>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase
domain {Thermotoga maritima [TaxId: 2336]}
Length = 192
Score = 37.8 bits (87), Expect = 8e-04
Identities = 18/98 (18%), Positives = 31/98 (31%), Gaps = 8/98 (8%)
Query: 79 HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSI 138
+L + + +LD G + L +I +D + EE +
Sbjct: 17 EFLKPEDEKIILDCTVGEG-GHSRAILEHCPGCRIIGIDVDSEVLRIAEEKL-------K 68
Query: 139 QTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCS 176
+ S + + D L E D IL+D S
Sbjct: 69 EFSDRVSLFKVSYREADFLLKTLGIEKVDGILMDLGVS 106
>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle
and C-terminal domains {Streptococcus mutans [TaxId:
1309]}
Length = 317
Score = 37.9 bits (87), Expect = 0.001
Identities = 29/184 (15%), Positives = 65/184 (35%), Gaps = 35/184 (19%)
Query: 85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
G+ VL++ + A+ T + L K ++ L +++ Q V D
Sbjct: 144 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMD 203
Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQ 204
+ + ++D I++D P S+A +
Sbjct: 204 VFDYF-------KYARRHHLTYDIIIIDPP------------------------SFARNK 232
Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS--LSVEENEAVIAWILHRH-PEVELV 261
K++ + L QG+ +L ++G+++ T + ++V + + I + +
Sbjct: 233 KEVFSVSKDYHKLI-RQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHTYLDL 291
Query: 262 QTLP 265
Q LP
Sbjct: 292 QQLP 295
>d1q7ha1 b.122.1.1 (A:69-153) Hypothetical protein Ta1423,
C-terminal domain {Archaeon Thermoplasma acidophilum
[TaxId: 2303]}
Length = 85
Score = 33.6 bits (77), Expect = 0.006
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 348 IIVDQPCALAVLRGADVFAPGVLAMP 373
+ VD+ +L G+D+FAPG+++M
Sbjct: 5 VTVDEGAEPHILNGSDLFAPGIVSMD 30
>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase
domain {Thermus thermophilus [TaxId: 274]}
Length = 182
Score = 34.7 bits (79), Expect = 0.009
Identities = 26/162 (16%), Positives = 45/162 (27%), Gaps = 25/162 (15%)
Query: 80 YLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQ 139
L V+PG +D H ++ G +I LD+ + + +
Sbjct: 13 LLAVRPGGVYVDATLGGAG---HARGILERGGRVIGLDQD----------PEAVARAKGL 59
Query: 140 THVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQ---RPMFYNANSFLNLDKK 196
+ + L E D IL D S F FL +
Sbjct: 60 HLPGLTVVQGNFRHLKRHLAALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAE 119
Query: 197 IKS------YANIQKKLLQAVYRFVSLFDWQGIPLLKKDGIL 232
+ + + V RF G+ +L K ++
Sbjct: 120 VLAPGGRLVVIAFHSLEDRVVKRF---LRESGLKVLTKKPLV 158
>d2apoa1 b.122.1.1 (A:247-331) Pseudouridine synthase II TruB,
C-terminal domain {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 85
Score = 32.4 bits (74), Expect = 0.014
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 343 HHPVQIIVDQPCALAVLRGADVFAPGVLAM 372
H +++V A+ GADV+ G+ +
Sbjct: 1 HLK-KVVVKDSAVDAICHGADVYVRGIAKL 29
>d2ey4a1 b.122.1.1 (A:253-336) Pseudouridine synthase II TruB,
C-terminal domain {Archaeon Pyrococcus furiosus [TaxId:
2261]}
Length = 84
Score = 32.0 bits (73), Expect = 0.022
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 348 IIVDQPCALAVLRGADVFAPGVLAM 372
+ + AV GAD+ PG+ +
Sbjct: 4 VWIKDSAVAAVTHGADLAVPGIAKL 28
>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine
N-methyltransferase, PNMTase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 263
Score = 32.5 bits (73), Expect = 0.060
Identities = 26/222 (11%), Positives = 58/222 (26%), Gaps = 24/222 (10%)
Query: 67 GILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTG-TLIALDKSKPRVTK 125
L+ L A G+ ++D+ + P + L + D + +
Sbjct: 39 WKLRCLAQTFAT---GEVSGRTLIDIGSGPT---VYQLLSACSHFEDITMTDFLEVNRQE 92
Query: 126 LEETIKK----LQLSSIQTHVYDSTRINTSSQI--DIERMKLQKESFDRILLDAPCSGFG 179
L +++ S H Q R ++++ + P
Sbjct: 93 LGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGS 152
Query: 180 QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSL 239
P+ +A + + ++ L + LL+ G L+
Sbjct: 153 PAPLPADALVSAFCLEAVSPDLASFQRALDHITT-----------LLRPGGHLLLIGALE 201
Query: 240 SVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAED 281
+ E E+ + L + G K +
Sbjct: 202 ESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDLRTYIMPA 243
>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 309
Score = 32.8 bits (74), Expect = 0.067
Identities = 24/181 (13%), Positives = 50/181 (27%), Gaps = 35/181 (19%)
Query: 75 ILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ 134
L KVL++ G + +A T + K K + + L+
Sbjct: 122 WLKNAVETADRPLKVLNLFGYTGV-ASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLE 180
Query: 135 LSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLD 194
+ I+ D+ + +R + + ++D IL D P G G
Sbjct: 181 QAPIRWICEDAMKFI-------QREERRGSTYDIILTDPPKFGRGTHGEV---------- 223
Query: 195 KKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS---LSVEENEAVIAWI 251
++ + L +L + + T S ++
Sbjct: 224 --------------WQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRET 269
Query: 252 L 252
+
Sbjct: 270 M 270
>d2cx1a1 b.122.1.1 (A:91-183) Hypothetical protein APE0525,
C-terminal domain {Archaeon Aeropyrum pernix [TaxId:
56636]}
Length = 93
Score = 29.0 bits (65), Expect = 0.22
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 347 QIIVDQPCALAVLRGADVFAPGVLAMP 373
++VD+ A+A+ +GA + PGV+ +
Sbjct: 3 VVLVDKGAAIALAKGAHLMIPGVVGVE 29
>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus
jannaschii [TaxId: 2190]}
Length = 230
Score = 30.1 bits (67), Expect = 0.36
Identities = 10/61 (16%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 75 ILAG-HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKL 133
I+ G + ++ K+L + A+ G +H+A + + + A++ + + +L + +
Sbjct: 63 IIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKG-IVYAIEYAPRIMRELLDACAER 121
Query: 134 Q 134
+
Sbjct: 122 E 122
>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli
[TaxId: 562]}
Length = 180
Score = 29.8 bits (66), Expect = 0.41
Identities = 14/76 (18%), Positives = 29/76 (38%)
Query: 84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVY 143
+PG V+D+ AAPG ++ + G +IA D + ++ +
Sbjct: 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRDELVMKAL 80
Query: 144 DSTRINTSSQIDIERM 159
++ Q+ + M
Sbjct: 81 LERVGDSKVQVVMSDM 96
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis
[TaxId: 1423]}
Length = 234
Score = 29.9 bits (66), Expect = 0.43
Identities = 8/41 (19%), Positives = 14/41 (34%), Gaps = 3/41 (7%)
Query: 81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKP 121
+ + +VLD+ A G I +D +K
Sbjct: 12 AECRAEHRVLDIGAGAG---HTALAFSPYVQECIGVDATKE 49
>d1iq8a3 b.122.1.1 (A:506-582) Archaeosine tRNA-guanine
transglycosylase, C3 domain {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 77
Score = 27.9 bits (62), Expect = 0.54
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 348 IIVDQPCALAVLRGADVFAPGVLAM 372
++V++ +G DVFA V+
Sbjct: 5 VVVNKEAEPFARKGKDVFAKFVIFA 29
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli
[TaxId: 562]}
Length = 245
Score = 29.2 bits (64), Expect = 0.73
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 76 LAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALD 117
G L ++PG ++LD+ + G L A TGT I +
Sbjct: 24 TLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMS 65
>d1r3ea1 b.122.1.1 (A:238-318) Pseudouridine synthase II TruB,
C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Length = 81
Score = 27.1 bits (60), Expect = 1.0
Identities = 4/26 (15%), Positives = 11/26 (42%)
Query: 347 QIIVDQPCALAVLRGADVFAPGVLAM 372
+++V Q +L G+ + +
Sbjct: 3 RVVVHQESTKMILNGSQIHLEMLKEW 28
>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain
{Thermus aquaticus [TaxId: 271]}
Length = 223
Score = 28.5 bits (62), Expect = 1.1
Identities = 6/43 (13%), Positives = 12/43 (27%)
Query: 79 HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKP 121
+ G +VL+ A G L + ++
Sbjct: 13 SLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPK 55
>d2ce7a1 a.269.1.1 (A:411-603) Cell division protein FtsH,
C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Length = 193
Score = 28.5 bits (63), Expect = 1.2
Identities = 8/42 (19%), Positives = 18/42 (42%)
Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQR 287
AV++ ++ V + +P+ L ED+ ++ R
Sbjct: 18 AVVSTVVPNGEPVHRISIIPRGYKALGYTLHLPEEDKYLVSR 59
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus
halodurans [TaxId: 86665]}
Length = 231
Score = 27.7 bits (60), Expect = 2.5
Identities = 6/41 (14%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKP 121
++ ++VLD+ G+ ++A D ++
Sbjct: 11 AALKGNEEVLDVATGGGH---VANAFAPFVKKVVAFDLTED 48
>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
methyltransferase Dot1l {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 406
Score = 27.7 bits (61), Expect = 2.8
Identities = 9/89 (10%), Positives = 23/89 (25%), Gaps = 2/89 (2%)
Query: 81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQT 140
++ G +D+ + GN A L + ++L+ +
Sbjct: 212 CQLKKGDTFMDLGSGVGN-CVVQAALECGCALSFGCEIMDDASDLTILQYEELKK-RCKL 269
Query: 141 HVYDSTRINTSSQIDIERMKLQKESFDRI 169
+ + S + E +
Sbjct: 270 YGMRLNNVEFSLKKSFVDNNRVAELIPQC 298
>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 229
Score = 26.9 bits (58), Expect = 4.0
Identities = 24/175 (13%), Positives = 43/175 (24%), Gaps = 41/175 (23%)
Query: 84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVY 143
G +VL++ + + D +I + + +L + + I
Sbjct: 52 SKGGRVLEVGFGMAIAASKVQEAPIDEHWII--ECNDGVFQRLRDWAPRQTHKVIPLKG- 108
Query: 144 DSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANI 203
+ L FD IL D
Sbjct: 109 ---------LWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQ------------------ 141
Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEV 258
+ +R LLK G+L YC + E ++ + I E
Sbjct: 142 FNFIKNHAFR-----------LLKPGGVLTYCNLTSWGELMKSKYSDITIMFEET 185
>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 260
Score = 26.7 bits (58), Expect = 4.4
Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 15/95 (15%)
Query: 83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTH 141
+P + V+DM A G+ IA+ +IA++K L E I ++ + +
Sbjct: 105 AKPDELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVENIHLNKVEDRMSAY 162
Query: 142 VYDSTRINTSSQIDIERMKLQKESFDRILLDAPCS 176
D+ R + DRIL+
Sbjct: 163 NMDN------------RDFPGENIADRILMGYVVR 185
>d1k47a1 d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK)
{Streptococcus pneumoniae r6 [TaxId: 171101]}
Length = 194
Score = 25.6 bits (55), Expect = 9.9
Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 3/39 (7%)
Query: 75 ILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTL 113
AG Y ++PGQ L + +D+ +
Sbjct: 11 YWAGEYAILEPGQLAL---IKDIPIYMRAEIAFSDSYRI 46
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.138 0.416
Gapped
Lambda K H
0.267 0.0403 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,442,979
Number of extensions: 66114
Number of successful extensions: 250
Number of sequences better than 10.0: 1
Number of HSP's gapped: 242
Number of HSP's successfully gapped: 33
Length of query: 397
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 310
Effective length of database: 1,213,086
Effective search space: 376056660
Effective search space used: 376056660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)