Psyllid ID: psy17794

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-----
Protein Sequence
MALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVL
Secondary Structure (PSIPRED)
cEEEEEccHHHHHHHHHHHHHHHHHcccccccccccHHHHHcccHHHHHHHHHHHcccEEEEEEcccccccHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cEEEEEccHHHHHHHHHHHHHHHHHccccccccccccccHHHEEHHHHHHHHHHHccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mallvlgdpedvknneDKIYSIAKRyggipagesngrrgYMLTYIIAYIRDFACdyyfigdsfetsvpwdkTVLLCINVKKRLtrectgrwlpvl
Flexible Loop (DISEMBL)
mallvlgdpedvknnEDKIYSIakryggipagesngrRGYMLTYIIAYIRDFACDYYFIGDSfetsvpwdkTVLLCINVKkrltrectgrwlpvl
Low Complexity Region (SEG)
MALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVL
Disordered region (IsUnstruct)
*****************KIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWL***
Disordered Region (DISOPRED)
MALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPV*
Disordered Region (DISEMBL)
MALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVL
Disordered Region (DISPRO)
MALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	95	2.2.26 [Sep-21-2011]
O00116	658	Alkyldihydroxyacetonephos	yes	N/A	0.894	0.129	0.611	8e-28
Q8C0I1	645	Alkyldihydroxyacetonephos	yes	N/A	0.926	0.136	0.579	4e-27
P97275	658	Alkyldihydroxyacetonephos	yes	N/A	0.894	0.129	0.588	1e-26
Q9EQR2	644	Alkyldihydroxyacetonephos	yes	N/A	0.926	0.136	0.556	1e-26
Q9V778	631	Alkyldihydroxyacetonephos	yes	N/A	0.926	0.139	0.534	8e-23
O45218	597	Alkyldihydroxyacetonephos	yes	N/A	0.936	0.149	0.428	4e-17

>sp|O00116|ADAS_HUMAN Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Homo sapiens GN=AGPS PE=1 SV=1

 Score =  122 bits (305), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 52/85 (61%), Positives = 67/85 (78%)

Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+S
Sbjct: 468 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGES 527

Query: 63  FETSVPWDKTVLLCINVKKRLTREC 87
           FETS PWD+ V LC NVK+R+TREC
Sbjct: 528 FETSAPWDRVVDLCRNVKERITREC 552

Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 2EC: 6

>sp|Q8C0I1|ADAS_MOUSE Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Mus musculus GN=Agps PE=1 SV=1

 Score =  119 bits (299), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 51/88 (57%), Positives = 66/88 (75%)

Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD   +YY IG+S
Sbjct: 455 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYVIGES 514

Query: 63  FETSVPWDKTVLLCINVKKRLTRECTGR 90
           FETS PWD+ + LC NVK+R+ REC  R
Sbjct: 515 FETSAPWDRVIDLCRNVKERIRRECKER 542

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|P97275|ADAS_CAVPO Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Cavia porcellus GN=AGPS PE=1 SV=1

 Score =  118 bits (296), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 50/85 (58%), Positives = 65/85 (76%)

Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD   +YY IG+S
Sbjct: 468 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGES 527

Query: 63  FETSVPWDKTVLLCINVKKRLTREC 87
           FETS PWD+ V LC NVK+R+ REC
Sbjct: 528 FETSAPWDRVVDLCRNVKERIRREC 552

Cavia porcellus (taxid: 10141)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q9EQR2|ADAS_RAT Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Rattus norvegicus GN=Agps PE=2 SV=1

 Score =  118 bits (295), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 49/88 (55%), Positives = 66/88 (75%)

Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD   +YY +G+S
Sbjct: 454 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYVVGES 513

Query: 63  FETSVPWDKTVLLCINVKKRLTRECTGR 90
           FETS PWD+ + LC NVK+R+ REC  R
Sbjct: 514 FETSAPWDRVIDLCRNVKERIRRECKER 541

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q9V778|ADAS_DROME Alkyldihydroxyacetonephosphate synthase OS=Drosophila melanogaster GN=CG10253 PE=2 SV=1

 Score =  105 bits (262), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 47/88 (53%), Positives = 62/88 (70%)

Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD +DV+  E  IY IA+++ G PAG  NG RGY+LT++IAYIRDF      + +S
Sbjct: 420 LLFEGDLKDVQRQEALIYEIAEKFQGFPAGGQNGERGYILTFVIAYIRDFGLHQGIVAES 479

Query: 63  FETSVPWDKTVLLCINVKKRLTRECTGR 90
           FETSVPWD+  LLC +VK+R+  EC+ R
Sbjct: 480 FETSVPWDRCSLLCRSVKQRVVSECSKR 507

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|O45218|ADAS_CAEEL Alkyldihydroxyacetonephosphate synthase OS=Caenorhabditis elegans GN=ads-1 PE=2 SV=1

 Score = 86.7 bits (213), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 39/91 (42%), Positives = 62/91 (68%), Gaps = 2/91 (2%)

Query: 7   GDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETS 66
           G+ E+V  +E+++  +A+++ G+  G  NG+ GY LT+ IAY+RD   ++  +G+SFETS
Sbjct: 401 GNREEVDQHEERLNKLAEQFHGVVGGAENGQYGYRLTFAIAYLRDLGMNHGVLGESFETS 460

Query: 67  VPWDKTVLLCINVKKRLTRECTGRWL--PVL 95
           VPWDK + LC NVK+ + RE   + +  PVL
Sbjct: 461 VPWDKVLSLCRNVKELMKREAKAQGVTHPVL 491

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	95
147907126	627	alkyldihydroxyacetonephosphate synthase,	0.926	0.140	0.590	3e-26
390464346	652	PREDICTED: alkyldihydroxyacetonephosphat	0.894	0.130	0.611	3e-26
355750655	584	hypothetical protein EGM_04101, partial	0.894	0.145	0.611	3e-26
426337844	626	PREDICTED: alkyldihydroxyacetonephosphat	0.894	0.135	0.611	3e-26
403258679	652	PREDICTED: alkyldihydroxyacetonephosphat	0.894	0.130	0.611	3e-26
402888755	660	PREDICTED: alkyldihydroxyacetonephosphat	0.894	0.128	0.611	3e-26
297668926	668	PREDICTED: alkyldihydroxyacetonephosphat	0.894	0.127	0.611	3e-26
297264408	693	PREDICTED: alkyldihydroxyacetonephosphat	0.894	0.122	0.611	3e-26
119631462	536	alkylglycerone phosphate synthase, isofo	0.894	0.158	0.611	3e-26
119631463	684	alkylglycerone phosphate synthase, isofo	0.894	0.124	0.611	3e-26

>gi|147907126|ref|NP_001086573.1| alkyldihydroxyacetonephosphate synthase, peroxisomal [Xenopus laevis] gi|49903684|gb|AAH76825.1| Agps-prov protein [Xenopus laevis]

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/88 (59%), Positives = 67/88 (76%)

Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGYMLT++IAY+RD   DYY IG+S
Sbjct: 437 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYMLTFVIAYLRDLGMDYYLIGES 496

Query: 63  FETSVPWDKTVLLCINVKKRLTRECTGR 90
           FETSVPWD+ + LC NVK+R+ REC  R
Sbjct: 497 FETSVPWDRVLDLCRNVKERIVRECKER 524

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|390464346|ref|XP_002749324.2| PREDICTED: alkyldihydroxyacetonephosphate synthase, peroxisomal isoform 1 [Callithrix jacchus]

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/85 (61%), Positives = 67/85 (78%)

Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+S
Sbjct: 462 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGES 521

Query: 63  FETSVPWDKTVLLCINVKKRLTREC 87
           FETS PWD+ V LC NVK+R+TREC
Sbjct: 522 FETSAPWDRVVDLCKNVKERITREC 546

Source: Callithrix jacchus

Species: Callithrix jacchus

Genus: Callithrix

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|355750655|gb|EHH54982.1| hypothetical protein EGM_04101, partial [Macaca fascicularis]

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/85 (61%), Positives = 67/85 (78%)

Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+S
Sbjct: 394 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGES 453

Query: 63  FETSVPWDKTVLLCINVKKRLTREC 87
           FETS PWD+ V LC NVK+R+TREC
Sbjct: 454 FETSAPWDRVVDLCRNVKERITREC 478

Source: Macaca fascicularis

Species: Macaca fascicularis

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|426337844|ref|XP_004032904.1| PREDICTED: alkyldihydroxyacetonephosphate synthase, peroxisomal [Gorilla gorilla gorilla]

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/85 (61%), Positives = 67/85 (78%)

Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+S
Sbjct: 436 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGES 495

Query: 63  FETSVPWDKTVLLCINVKKRLTREC 87
           FETS PWD+ V LC NVK+R+TREC
Sbjct: 496 FETSAPWDRVVDLCRNVKERITREC 520

Source: Gorilla gorilla gorilla

Species: Gorilla gorilla

Genus: Gorilla

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|403258679|ref|XP_003921880.1| PREDICTED: alkyldihydroxyacetonephosphate synthase, peroxisomal isoform 1 [Saimiri boliviensis boliviensis]

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/85 (61%), Positives = 67/85 (78%)

Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+S
Sbjct: 462 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGES 521

Query: 63  FETSVPWDKTVLLCINVKKRLTREC 87
           FETS PWD+ V LC NVK+R+TREC
Sbjct: 522 FETSAPWDRVVDLCRNVKERITREC 546

Source: Saimiri boliviensis boliviensis

Species: Saimiri boliviensis

Genus: Saimiri

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|402888755|ref|XP_003907714.1| PREDICTED: alkyldihydroxyacetonephosphate synthase, peroxisomal [Papio anubis]

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/85 (61%), Positives = 67/85 (78%)

Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+S
Sbjct: 470 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGES 529

Query: 63  FETSVPWDKTVLLCINVKKRLTREC 87
           FETS PWD+ V LC NVK+R+TREC
Sbjct: 530 FETSAPWDRVVDLCRNVKERITREC 554

Source: Papio anubis

Species: Papio anubis

Genus: Papio

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|297668926|ref|XP_002812675.1| PREDICTED: alkyldihydroxyacetonephosphate synthase, peroxisomal [Pongo abelii]

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/85 (61%), Positives = 67/85 (78%)

Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+S
Sbjct: 478 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGES 537

Query: 63  FETSVPWDKTVLLCINVKKRLTREC 87
           FETS PWD+ V LC NVK+R+TREC
Sbjct: 538 FETSAPWDRVVDLCRNVKERITREC 562

Source: Pongo abelii

Species: Pongo abelii

Genus: Pongo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|297264408|ref|XP_002799004.1| PREDICTED: alkyldihydroxyacetonephosphate synthase, peroxisomal-like [Macaca mulatta]

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/85 (61%), Positives = 67/85 (78%)

Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+S
Sbjct: 503 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGES 562

Query: 63  FETSVPWDKTVLLCINVKKRLTREC 87
           FETS PWD+ V LC NVK+R+TREC
Sbjct: 563 FETSAPWDRVVDLCRNVKERITREC 587

Source: Macaca mulatta

Species: Macaca mulatta

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|119631462|gb|EAX11057.1| alkylglycerone phosphate synthase, isoform CRA_a [Homo sapiens]

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/85 (61%), Positives = 67/85 (78%)

Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+S
Sbjct: 346 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGES 405

Query: 63  FETSVPWDKTVLLCINVKKRLTREC 87
           FETS PWD+ V LC NVK+R+TREC
Sbjct: 406 FETSAPWDRVVDLCRNVKERITREC 430

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|119631463|gb|EAX11058.1| alkylglycerone phosphate synthase, isoform CRA_b [Homo sapiens]

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/85 (61%), Positives = 67/85 (78%)

Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+S
Sbjct: 494 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGES 553

Query: 63  FETSVPWDKTVLLCINVKKRLTREC 87
           FETS PWD+ V LC NVK+R+TREC
Sbjct: 554 FETSAPWDRVVDLCRNVKERITREC 578

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	95
UNIPROTKB|O00116	658	AGPS "Alkyldihydroxyacetonepho	0.894	0.129	0.611	5.1e-25
UNIPROTKB|E1BPV2	576	AGPS "Uncharacterized protein"	0.894	0.147	0.6	7.5e-25
UNIPROTKB|E2QVV9	653	AGPS "Uncharacterized protein"	0.894	0.130	0.6	1.1e-24
UNIPROTKB|F6Y1U6	663	AGPS "Uncharacterized protein"	0.894	0.128	0.6	1.1e-24
UNIPROTKB|J9NZ69	699	AGPS "Uncharacterized protein"	0.894	0.121	0.6	1.3e-24
UNIPROTKB|I3LM15	646	AGPS "Uncharacterized protein"	0.894	0.131	0.6	1.3e-24
UNIPROTKB|F1P5J7	638	AGPS "Uncharacterized protein"	0.894	0.133	0.6	1.7e-24
MGI|MGI:2443065	645	Agps "alkylglycerone phosphate	0.926	0.136	0.579	2.8e-24
UNIPROTKB|P97275	658	AGPS "Alkyldihydroxyacetonepho	0.894	0.129	0.588	6.2e-24
RGD|620364	644	Agps "alkylglycerone phosphate	0.926	0.136	0.556	7.6e-24

UNIPROTKB|O00116 AGPS "Alkyldihydroxyacetonephosphate synthase, peroxisomal" [Homo sapiens (taxid:9606)]

 Score = 293 (108.2 bits), Expect = 5.1e-25, P = 5.1e-25
 Identities = 52/85 (61%), Positives = 67/85 (78%)

Query:     3 LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
             LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+S
Sbjct:   468 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGES 527

Query:    63 FETSVPWDKTVLLCINVKKRLTREC 87
             FETS PWD+ V LC NVK+R+TREC
Sbjct:   528 FETSAPWDRVVDLCRNVKERITREC 552

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0008611 "ether lipid biosynthetic process" evidence=IEA;ISS;TAS

GO:0071949 "FAD binding" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IDA

GO:0005778 "peroxisomal membrane" evidence=IDA

GO:0008610 "lipid biosynthetic process" evidence=IDA

GO:0005782 "peroxisomal matrix" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|E1BPV2 AGPS "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 290 (107.1 bits), Expect = 7.5e-25, P = 7.5e-25
 Identities = 51/85 (60%), Positives = 66/85 (77%)

Query:     3 LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
             LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD   +YY +G+S
Sbjct:   386 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYILGES 445

Query:    63 FETSVPWDKTVLLCINVKKRLTREC 87
             FETS PWD+ V LC NVK+R+TREC
Sbjct:   446 FETSAPWDRVVDLCRNVKERITREC 470

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

UNIPROTKB|E2QVV9 AGPS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 290 (107.1 bits), Expect = 1.1e-24, P = 1.1e-24
 Identities = 51/85 (60%), Positives = 66/85 (77%)

Query:     3 LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
             LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD   +YY +G+S
Sbjct:   463 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYILGES 522

Query:    63 FETSVPWDKTVLLCINVKKRLTREC 87
             FETS PWD+ V LC NVK+R+TREC
Sbjct:   523 FETSAPWDRVVDLCRNVKERITREC 547

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IEA

UNIPROTKB|F6Y1U6 AGPS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 290 (107.1 bits), Expect = 1.1e-24, P = 1.1e-24
 Identities = 51/85 (60%), Positives = 66/85 (77%)

Query:     3 LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
             LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD   +YY +G+S
Sbjct:   473 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYILGES 532

Query:    63 FETSVPWDKTVLLCINVKKRLTREC 87
             FETS PWD+ V LC NVK+R+TREC
Sbjct:   533 FETSAPWDRVVDLCRNVKERITREC 557

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IEA

UNIPROTKB|J9NZ69 AGPS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 290 (107.1 bits), Expect = 1.3e-24, P = 1.3e-24
 Identities = 51/85 (60%), Positives = 66/85 (77%)

Query:     3 LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
             LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD   +YY +G+S
Sbjct:   469 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYILGES 528

Query:    63 FETSVPWDKTVLLCINVKKRLTREC 87
             FETS PWD+ V LC NVK+R+TREC
Sbjct:   529 FETSAPWDRVVDLCRNVKERITREC 553

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IEA

UNIPROTKB|I3LM15 AGPS "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 289 (106.8 bits), Expect = 1.3e-24, P = 1.3e-24
 Identities = 51/85 (60%), Positives = 66/85 (77%)

Query:     3 LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
             LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD   +YY +G+S
Sbjct:   496 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYVLGES 555

Query:    63 FETSVPWDKTVLLCINVKKRLTREC 87
             FETS PWD+ V LC NVK+R+TREC
Sbjct:   556 FETSAPWDRVVDLCRNVKERITREC 580

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

UNIPROTKB|F1P5J7 AGPS "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 288 (106.4 bits), Expect = 1.7e-24, P = 1.7e-24
 Identities = 51/85 (60%), Positives = 66/85 (77%)

Query:     3 LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
             LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGYMLT++IAY+RD   DYY IG+S
Sbjct:   448 LLFEGDREKVLQHEKQVYDIATKFGGLAAGEDNGQRGYMLTFVIAYLRDLGLDYYVIGES 507

Query:    63 FETSVPWDKTVLLCINVKKRLTREC 87
             FETSVPWD+ + LC NVK+R+ REC
Sbjct:   508 FETSVPWDRVLDLCRNVKERIVREC 532

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

MGI|MGI:2443065 Agps "alkylglycerone phosphate synthase" [Mus musculus (taxid:10090)]

 Score = 286 (105.7 bits), Expect = 2.8e-24, P = 2.8e-24
 Identities = 51/88 (57%), Positives = 66/88 (75%)

Query:     3 LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
             LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD   +YY IG+S
Sbjct:   455 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYVIGES 514

Query:    63 FETSVPWDKTVLLCINVKKRLTRECTGR 90
             FETS PWD+ + LC NVK+R+ REC  R
Sbjct:   515 FETSAPWDRVIDLCRNVKERIRRECKER 542

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005777 "peroxisome" evidence=ISO

GO:0005778 "peroxisomal membrane" evidence=ISO

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=ISO

GO:0008610 "lipid biosynthetic process" evidence=ISO

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|P97275 AGPS "Alkyldihydroxyacetonephosphate synthase, peroxisomal" [Cavia porcellus (taxid:10141)]

 Score = 283 (104.7 bits), Expect = 6.2e-24, P = 6.2e-24
 Identities = 50/85 (58%), Positives = 65/85 (76%)

Query:     3 LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
             LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD   +YY IG+S
Sbjct:   468 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGES 527

Query:    63 FETSVPWDKTVLLCINVKKRLTREC 87
             FETS PWD+ V LC NVK+R+ REC
Sbjct:   528 FETSAPWDRVVDLCRNVKERIRREC 552

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IDA

GO:0008611 "ether lipid biosynthetic process" evidence=IDA

GO:0071949 "FAD binding" evidence=IDA

RGD|620364 Agps "alkylglycerone phosphate synthase" [Rattus norvegicus (taxid:10116)]

 Score = 282 (104.3 bits), Expect = 7.6e-24, P = 7.6e-24
 Identities = 49/88 (55%), Positives = 66/88 (75%)

Query:     3 LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
             LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD   +YY +G+S
Sbjct:   454 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYVVGES 513

Query:    63 FETSVPWDKTVLLCINVKKRLTRECTGR 90
             FETS PWD+ + LC NVK+R+ REC  R
Sbjct:   514 FETSAPWDRVIDLCRNVKERIRRECKER 541

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005777 "peroxisome" evidence=ISO;IDA;TAS

GO:0005778 "peroxisomal membrane" evidence=ISO

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=ISO;IDA

GO:0008610 "lipid biosynthetic process" evidence=ISO

GO:0008611 "ether lipid biosynthetic process" evidence=IEA;ISS

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

GO:0042221 "response to chemical stimulus" evidence=IEP

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0071949 "FAD binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9EQR2	ADAS_RAT	2, ., 5, ., 1, ., 2, 6	0.5568	0.9263	0.1366	yes	N/A
O00116	ADAS_HUMAN	2, ., 5, ., 1, ., 2, 6	0.6117	0.8947	0.1291	yes	N/A
P97275	ADAS_CAVPO	2, ., 5, ., 1, ., 2, 6	0.5882	0.8947	0.1291	yes	N/A
Q9V778	ADAS_DROME	2, ., 5, ., 1, ., 2, 6	0.5340	0.9263	0.1394	yes	N/A
Q8C0I1	ADAS_MOUSE	2, ., 5, ., 1, ., 2, 6	0.5795	0.9263	0.1364	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	95
KOG1233|consensus	613		99.89
PF02913	248	FAD-oxidase_C: FAD linked oxidases, C-terminal dom	98.59
TIGR00387	413	glcD glycolate oxidase, subunit GlcD. This protein	98.06
PRK11230	499	glycolate oxidase subunit GlcD; Provisional	97.6
PLN02805	555	D-lactate dehydrogenase [cytochrome]	97.16
COG3286	204	Uncharacterized protein conserved in archaea [Func	93.46

>KOG1233|consensus

Probab=99.89  E-value=8.2e-24  Score=168.85  Aligned_cols=93  Identities=48%  Similarity=0.931  Sum_probs=90.8

Q ss_pred             EEEEecChHHHHhHHHHHHHHHHHcCCccCCCccchhhhhccchhhhhhHHHHhcccceeeeeccccccCcHHHHHHHHH
Q psy17794          2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKK   81 (95)
Q Consensus         2 ~~gfEG~~~~v~~~~~~~~~i~~~~GG~~~G~~~G~~W~~~rF~~PYLRd~l~~~g~~~dT~ETA~~Ws~~~~l~~~V~~   81 (95)
                      ++.|||+.++|+.+.+++++|+.+++|+..|+++|+.+|.++|.++||||+.+.+|++.|+||||+|||++..||++||+
T Consensus       422 TllfEGdre~V~qhE~~~y~iAekF~G~~aG~~NGqrGY~LTfvIAYiRDlgl~~gvlgESFETSvPWDrv~~LCRnVKe  501 (613)
T KOG1233|consen  422 TLLFEGDREEVDQHEERLYKIAEKFHGVVAGAENGQRGYRLTFVIAYIRDLGLNHGVLGESFETSVPWDRVLSLCRNVKE  501 (613)
T ss_pred             hheecccHHHHHHHHHHHHHHHHHhCCccccccccccceEEEEeHHHHHhhcccccchhhcccccCCHHHHHHHHHHHHH
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCCC
Q psy17794         82 RLTRECTGRWLPV   94 (95)
Q Consensus        82 a~~~a~~~~g~~~   94 (95)
                      ++.++|+++|+..
T Consensus       502 r~~rEck~~gv~~  514 (613)
T KOG1233|consen  502 RMKRECKAQGVTH  514 (613)
T ss_pred             HHHHHHHhcCCCc
Confidence            9999999999864

>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage

Probab=98.59  E-value=1.5e-08  Score=72.09  Aligned_cols=86  Identities=23%  Similarity=0.280  Sum_probs=69.0

Q ss_pred             CEEEEecChHH-HHhHHH-HHHHHHHHcCCcc----CC-CccchhhhhccchhhhhhHHHHhcccceeeeeccccccCcH
Q psy17794          1 MALLVLGDPED-VKNNED-KIYSIAKRYGGIP----AG-ESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTV   73 (95)
Q Consensus         1 ~~~gfEG~~~~-v~~~~~-~~~~i~~~~GG~~----~G-~~~G~~W~~~rF~~PYLRd~l~~~g~~~dT~ETA~~Ws~~~   73 (95)
                      +++.|+|+++. ++.+.+ .+.++++++|+..    .+ +...+.|..-++..||+++.....+...+++|++++|++++
T Consensus        62 llv~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~~~~~~~~~W~~R~~~~~~~~~~~~~~~~~~~~~dv~vp~~~l~  141 (248)
T PF02913_consen   62 LLVEFEGSDEEAVEEQLEAEIEEICKKYGGEDVVIADDEEEQERLWAIRRAIMPYLRDAAGRAGPVWDTEDVAVPPSRLP  141 (248)
T ss_dssp             EEEECCCHHHCCHHHHHHHHHHHHHCTCTCCEEEEEHCHHCTSTHHHHHHHHCCGGGCSHCTTEEEEEEEEEESCHHHHH
T ss_pred             EEEEECCCcHHHHHHHHHHHHHHHHhhcCCceeEEeCCHHHHHhhhhhhhhhcccccccccccCCceeeeeecccchhhh
Confidence            47899998854 555566 7888888888754    12 23456788777788899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy17794         74 LLCINVKKRLTRE   86 (95)
Q Consensus        74 ~l~~~V~~a~~~a   86 (95)
                      ++++.+++.+.+.
T Consensus       142 ~~~~~~~~~~~~~  154 (248)
T PF02913_consen  142 EFLREIRALLREY  154 (248)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             hHHHhhhhhhhhc
Confidence            9999998777654

The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....

>TIGR00387 glcD glycolate oxidase, subunit GlcD

Probab=98.06  E-value=5.7e-06  Score=65.52  Aligned_cols=81  Identities=16%  Similarity=0.166  Sum_probs=61.9

Q ss_pred             CEEEEecChHHHHhHHHHHHHHHHHcCCccC----C-CccchhhhhccchhhhhhHHHHhcccceeeeeccccccCcHHH
Q psy17794          1 MALLVLGDPEDVKNNEDKIYSIAKRYGGIPA----G-ESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLL   75 (95)
Q Consensus         1 ~~~gfEG~~~~v~~~~~~~~~i~~~~GG~~~----G-~~~G~~W~~~rF~~PYLRd~l~~~g~~~dT~ETA~~Ws~~~~l   75 (95)
                      +++.|+|+.++++.+.+++.++++++|+...    + ++..+.|...++..|++++.. ...+   +.|+|+||++++++
T Consensus       234 l~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~r~~~~~~~~~~~-~~~~---~~d~~vp~~~l~~~  309 (413)
T TIGR00387       234 LLVEIDGVHEAVERDEEKIEQICRKNGAVDVQIAQDEEERALLWAGRRNAFKAASKLS-PLYL---IEDGTVPRSKLPEA  309 (413)
T ss_pred             EEEEecCCcHHHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHHHHHhHHHHHhhC-CCcc---eeEEecCHHHHHHH
Confidence            3578999998999999999999999988533    2 234566877777888998742 2222   46799999999999


Q ss_pred             HHHHHHHHHH
Q psy17794         76 CINVKKRLTR   85 (95)
Q Consensus        76 ~~~V~~a~~~   85 (95)
                      ++.+++.+.+
T Consensus       310 ~~~~~~~~~~  319 (413)
T TIGR00387       310 LRGIADIARK  319 (413)
T ss_pred             HHHHHHHHHH
Confidence            9999776644

This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.

>PRK11230 glycolate oxidase subunit GlcD; Provisional

Probab=97.60  E-value=0.00011  Score=59.96  Aligned_cols=80  Identities=9%  Similarity=0.067  Sum_probs=57.5

Q ss_pred             CEEEEecChHHHHhHHHHHHHHHHHcCCccCC--C---ccchhhhhccchhhhhhHHHHhcccceeeeeccccccCcHHH
Q psy17794          1 MALLVLGDPEDVKNNEDKIYSIAKRYGGIPAG--E---SNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLL   75 (95)
Q Consensus         1 ~~~gfEG~~~~v~~~~~~~~~i~~~~GG~~~G--~---~~G~~W~~~rF~~PYLRd~l~~~g~~~dT~ETA~~Ws~~~~l   75 (95)
                      +++.|+|++++++.+.+++.++++++|+..+.  +   +..+.|..-+...|+++..  ..+++  ..+++|||++++.+
T Consensus       291 ll~e~~g~~~~v~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~W~~R~~~~~~~~~~--~~~~~--~~dv~vP~~~l~~~  366 (499)
T PRK11230        291 LLCELDGVESDVQEDCERVNDILLKAGATDVRLAQDEAERVRFWAGRKNAFPAVGRI--SPDYY--CMDGTIPRRELPGV  366 (499)
T ss_pred             EEEEecCCchHHHHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHhhHHHHHhh--CCCee--EEeecCChHHHHHH
Confidence            36788999999999999999999999975332  1   2234565533456787753  23344  34999999999999


Q ss_pred             HHHHHHHHH
Q psy17794         76 CINVKKRLT   84 (95)
Q Consensus        76 ~~~V~~a~~   84 (95)
                      ++.+++...
T Consensus       367 ~~~~~~~~~  375 (499)
T PRK11230        367 LEGIARLSQ  375 (499)
T ss_pred             HHHHHHHHH
Confidence            999977443

>PLN02805 D-lactate dehydrogenase [cytochrome]

Probab=97.16  E-value=0.0008  Score=55.88  Aligned_cols=82  Identities=15%  Similarity=0.077  Sum_probs=54.2

Q ss_pred             CEEEEecChHHHHhHHHHHHHHHHHcCCc--cCCCcc---chhhhhccchhhhhhHHHHhcccceeeeeccccccCcHHH
Q psy17794          1 MALLVLGDPEDVKNNEDKIYSIAKRYGGI--PAGESN---GRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLL   75 (95)
Q Consensus         1 ~~~gfEG~~~~v~~~~~~~~~i~~~~GG~--~~G~~~---G~~W~~~rF~~PYLRd~l~~~g~~~dT~ETA~~Ws~~~~l   75 (95)
                      +++.|+|++++++.+.+.+.+|++++|+.  .+...+   .+.|. .|-.....-- ...-+....+.+++|||++++++
T Consensus       366 Ll~e~~g~~~~~~~~~~~~~~i~~~~g~~~~~~a~~~~e~~~lW~-~R~~~~~~~~-~~~~~~~~~~~DvaVP~s~L~e~  443 (555)
T PLN02805        366 LMFEFIGTEAYAREQTLIVQKIASKHNGSDFVFAEEPEAKKELWK-IRKEALWACF-AMEPKYEAMITDVCVPLSHLAEL  443 (555)
T ss_pred             EEEEEecCcHHHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHH-HHHHHHHHHh-hcCCCCceeEEEEEEEHHHHHHH
Confidence            46788999999999999999999999984  233333   34455 3332221110 01113333467899999999999


Q ss_pred             HHHHHHHHH
Q psy17794         76 CINVKKRLT   84 (95)
Q Consensus        76 ~~~V~~a~~   84 (95)
                      ++.+++.+.
T Consensus       444 i~~~~~~~~  452 (555)
T PLN02805        444 ISRSKKELD  452 (555)
T ss_pred             HHHHHHHHH
Confidence            999976654

>COG3286 Uncharacterized protein conserved in archaea [Function unknown]

Probab=93.46  E-value=0.37  Score=35.81  Aligned_cols=84  Identities=14%  Similarity=0.182  Sum_probs=59.1

Q ss_pred             EEEecChHHHHhHHHHHHHHHHHcCCccCCCccc-----hhhhhccchhh--hhhHHHHhccccee----eeeccccccC
Q psy17794          3 LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNG-----RRGYMLTYIIA--YIRDFACDYYFIGD----SFETSVPWDK   71 (95)
Q Consensus         3 ~gfEG~~~~v~~~~~~~~~i~~~~GG~~~G~~~G-----~~W~~~rF~~P--YLRd~l~~~g~~~d----T~ETA~~Ws~   71 (95)
                      +=..|.+++++..-+.+.++.+..-+..-+..-|     .--...+=+.|  -|+|.|--+|+=++    -++|++||+.
T Consensus        41 V~v~G~~~eireair~irel~~~vr~r~~~~~~~ly~l~~~~~~a~p~Vp~~vl~daLk~~GyrVevr~~~l~T~ap~~e  120 (204)
T COG3286          41 VNVFGTKDEIREAIRAIRELHRRVRRRLYPDRQGLYTLYRIFEEASPNVPPDVLIDALKLLGYRVEVRGGELKTNAPWSE  120 (204)
T ss_pred             EEEecchHHHHHHHHHHHHHHHHHHhhhccCccceEeeHhHHHhhcCCCCHHHHHHHHHhCCceEEeeCceeecCCCHHH
Confidence            3457888899999888888888776644333222     11112222222  89999999999775    4899999999


Q ss_pred             cHHHHHHHHHHHHHH
Q psy17794         72 TVLLCINVKKRLTRE   86 (95)
Q Consensus        72 ~~~l~~~V~~a~~~a   86 (95)
                      +..+.+.+-+..+++
T Consensus       121 v~E~vreLse~~~E~  135 (204)
T COG3286         121 VVELVRELSEVYREA  135 (204)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999998887766654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	95
4bby_A	658	Mammalian Alkyldihydroxyacetonephosphate Synthase:		8e-28
4bca_A	658	Mammalian Alkyldihydroxyacetonephosphate Synthase:		8e-28
4bc7_A	658	Mammalian Alkyldihydroxyacetonephosphate Synthase:		8e-28

>pdb|4BBY|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-Type Length = 658

Iteration: 1
 Score =  118 bits (296), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 50/85 (58%), Positives = 65/85 (76%)
Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD   +YY IG+S
Sbjct: 468 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGES 527
Query: 63  FETSVPWDKTVLLCINVKKRLTREC 87
           FETS PWD+ V LC NVK+R+ REC
Sbjct: 528 FETSAPWDRVVDLCRNVKERIRREC 552

>pdb|4BCA|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Tyr578phe Mutant Length = 658

Iteration: 1
 Score =  118 bits (296), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 50/85 (58%), Positives = 65/85 (76%)
Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD   +YY IG+S
Sbjct: 468 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGES 527
Query: 63  FETSVPWDKTVLLCINVKKRLTREC 87
           FETS PWD+ V LC NVK+R+ REC
Sbjct: 528 FETSAPWDRVVDLCRNVKERIRREC 552

>pdb|4BC7|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Arg419his Mutant Length = 658

Iteration: 1
 Score =  118 bits (296), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 50/85 (58%), Positives = 65/85 (76%)
Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD   +YY IG+S
Sbjct: 468 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGES 527
Query: 63  FETSVPWDKTVLLCINVKKRLTREC 87
           FETS PWD+ V LC NVK+R+ REC
Sbjct: 528 FETSAPWDRVVDLCRNVKERIRREC 552

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	95
2uuu_A	584	Alkyldihydroxyacetonephosphate synthase; transfera	2e-19

>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Length = 584

 Score = 79.8 bits (197), Expect = 2e-19
 Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 3/98 (3%)

Query: 1   MALLVL---GDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYY 57
           + L ++   G  + V  +   ++ I  +      G + G+      Y + YIRDF  D+ 
Sbjct: 392 VCLSIIGFEGPKKVVDFHRTSVFDILSKNAAFGLGSAPGKTWAEKRYDLPYIRDFLLDHN 451

Query: 58  FIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVL 95
              D  ET+V +     L  + K+   +    + +P  
Sbjct: 452 MWVDVAETTVSYANLQTLWKDAKQTFVKHFKDQGIPAW 489

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	95
2uuu_A	584	Alkyldihydroxyacetonephosphate synthase; transfera	99.42
4bby_A	658	Alkyldihydroxyacetonephosphate synthase, peroxiso;	99.31
1f0x_A	571	DLDH, D-lactate dehydrogenase; oxidoreductase; HET	97.55
1e8g_A	560	Vanillyl-alcohol oxidase; oxidoreductase, flavoenz	97.49
3pm9_A	476	Putative oxidoreductase; putative D-2-hydroxygluta	97.03
2exr_A	524	Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin	95.83
1wvf_A	520	4-cresol dehydrogenase [hydroxylating] flavoprote	94.21

>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*

Probab=99.42  E-value=2.4e-13  Score=110.58  Aligned_cols=93  Identities=20%  Similarity=0.292  Sum_probs=87.0

Q ss_pred             CEEEEecChHHHHhHHHHHHHHHHHcCCccCCCccchhhhhccchhhhhhHHHHhcccceeeeeccccccCcHHHHHHHH
Q psy17794          1 MALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVK   80 (95)
Q Consensus         1 ~~~gfEG~~~~v~~~~~~~~~i~~~~GG~~~G~~~G~~W~~~rF~~PYLRd~l~~~g~~~dT~ETA~~Ws~~~~l~~~V~   80 (95)
                      +++.|+|++++|+.+.+++.++++++||...+++..+.|+..|+..||+|+.++++|.+.+++||+|||++++++++.++
T Consensus       395 llve~~g~~~~v~~~~~~~~~~~~~~g~~~~~~~~~~lW~~r~~~~~~l~~~~~~~g~~~~~~Dv~VP~~~l~~~~~~~~  474 (584)
T 2uuu_A          395 SIIGFEGPKKVVDFHRTSVFDILSKNAAFGLGSAPGKTWAEKRYDLPYIRDFLLDHNMWVDVAETTVSYANLQTLWKDAK  474 (584)
T ss_dssp             EEEEEEECHHHHHHHHHHHHHHHHTTTCEEEEEESTTHHHHGGGGHHHHHHHHHTTTEEEEEEEEEEEHHHHHHHHHHHH
T ss_pred             EEEEEecChHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHhhhchHHHHhhhcccCCccccceEEeeHHHHHHHHHHHH
Confidence            36789999999999999999999999998888888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCC
Q psy17794         81 KRLTRECTGRWLP   93 (95)
Q Consensus        81 ~a~~~a~~~~g~~   93 (95)
                      +.+.+.+.++|.+
T Consensus       475 ~~l~~~~~~~g~~  487 (584)
T 2uuu_A          475 QTFVKHFKDQGIP  487 (584)
T ss_dssp             HHHHHHHHTTTCC
T ss_pred             HHHHhHHHhcCCe
Confidence            9999999888765

>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*

Probab=99.31  E-value=3.3e-12  Score=104.67  Aligned_cols=91  Identities=55%  Similarity=1.070  Sum_probs=87.3

Q ss_pred             EEEEecChHHHHhHHHHHHHHHHHcCCccCCCccchhhhhccchhhhhhHHHHhcccceeeeeccccccCcHHHHHHHHH
Q psy17794          2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKK   81 (95)
Q Consensus         2 ~~gfEG~~~~v~~~~~~~~~i~~~~GG~~~G~~~G~~W~~~rF~~PYLRd~l~~~g~~~dT~ETA~~Ws~~~~l~~~V~~   81 (95)
                      ++.|||+.+.+..+.+.+.++++++||+..++..+++|+..||..||+|+..++.+...+++||+++|++++++++.+++
T Consensus       467 ~~~~eg~~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~avP~~~l~~~~~~v~~  546 (658)
T 4bby_A          467 TLLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFETSAPWDRVVDLCRNVKE  546 (658)
T ss_dssp             EEEEEECHHHHHHHHHHHHHHHHTTTCEECCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEGGGHHHHHHHHHH
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHhhHHHHHHhhccccCCccceEEEEeeHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCC
Q psy17794         82 RLTRECTGRWL   92 (95)
Q Consensus        82 a~~~a~~~~g~   92 (95)
                      .+.+.+.+.++
T Consensus       547 ~l~~~~~~~g~  557 (658)
T 4bby_A          547 RIRRECKEKGV  557 (658)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHhcCc
Confidence            99999888765

>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1

Probab=97.55  E-value=1.3e-05  Score=65.11  Aligned_cols=81  Identities=11%  Similarity=0.093  Sum_probs=60.0

Q ss_pred             EEEEecChHHHHhHHHHHHHHHHHcCCccC--CCccchhhhhccchhh----hhhHHHHh-cccceeeeeccccccCcHH
Q psy17794          2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPA--GESNGRRGYMLTYIIA----YIRDFACD-YYFIGDSFETSVPWDKTVL   74 (95)
Q Consensus         2 ~~gfEG~~~~v~~~~~~~~~i~~~~GG~~~--G~~~G~~W~~~rF~~P----YLRd~l~~-~g~~~dT~ETA~~Ws~~~~   74 (95)
                      ++-|+|+..+.  ..+++.++++.++|...  .++.+++|+..||..|    ++|+...+ .| .+.+++||+||++++.
T Consensus       393 lve~~g~~~~~--~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~R~~~~~~~~~~r~~~~~~~g-~~~~~Dvavp~~~l~~  469 (571)
T 1f0x_A          393 LLKMAGDGVGE--AKSWLVDYFKQAEGDFFVCTPEEGSKAFLHRFAAAGAAIRYQAVHSDEVE-DILALDIALRRNDTEW  469 (571)
T ss_dssp             EEEECTTHHHH--HHHHHHHHHHHSSCEEEECCHHHHHHHHHHHTTHHHHHHHHHHHTTTTEE-EEEEEEEECCTTCSCC
T ss_pred             EEEEecCcHHH--HHHHHHHHHHHcCCCeeecCccHHHHHHHHhhhhhhHHHHhhhcchhhcC-CceEEEEEecHHHhHH
Confidence            45666765432  35666778888866444  4567788888999997    88988775 33 3689999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy17794         75 LCINVKKRLTRE   86 (95)
Q Consensus        75 l~~~V~~a~~~a   86 (95)
                      + +.+++.+.+.
T Consensus       470 ~-~~~~~~l~~~  480 (571)
T 1f0x_A          470 Y-EHLPPEIDSQ  480 (571)
T ss_dssp             S-CCCCHHHHTT
T ss_pred             H-HHHHHHHHhh
Confidence            9 8887776543

>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*

Probab=97.49  E-value=0.00014  Score=58.48  Aligned_cols=81  Identities=10%  Similarity=-0.094  Sum_probs=59.6

Q ss_pred             EEEEecChHHHHhHHHHHHHHHHHcCCccC--CCcc--chhhhhccchh----hhhhHH---HHhcccceeeeeccccc-
Q psy17794          2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPA--GESN--GRRGYMLTYII----AYIRDF---ACDYYFIGDSFETSVPW-   69 (95)
Q Consensus         2 ~~gfEG~~~~v~~~~~~~~~i~~~~GG~~~--G~~~--G~~W~~~rF~~----PYLRd~---l~~~g~~~dT~ETA~~W-   69 (95)
                      ++.|+|+++.|+.+.+++.++|+++||..+  ...+  .+.|+. |+..    |+++..   .|..|=...++++++|| 
T Consensus       354 ~~e~~g~~~~v~~~~~~i~~i~~~~~~~~~~~~~~~~e~~~~w~-R~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~vP~~  432 (560)
T 1e8g_A          354 YGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRV-RDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVS  432 (560)
T ss_dssp             EEEEESCHHHHHHHHHHHHHHHTTSTTCEEECGGGSCTTCHHHH-HHHHTTTCCCCGGGGGGGGSTTEEEEEECBEECSS
T ss_pred             EEEEeCCHHHHHHHHHHHHHHHHhCCCceeeccccchhhhhHHH-HHhhcccCchhhhhccccccCCCceEEEeeecCCC
Confidence            466999999999999999999999998533  3333  345665 7765    887754   23332234668999999 


Q ss_pred             -cCcHHHHHHHHHHH
Q psy17794         70 -DKTVLLCINVKKRL   83 (95)
Q Consensus        70 -s~~~~l~~~V~~a~   83 (95)
                       ++++++++.+++.+
T Consensus       433 ~~~l~~~~~~~~~~~  447 (560)
T 1e8g_A          433 GEDAMMQYAVTKKRC  447 (560)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence             99999999996644

>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}

Probab=97.03  E-value=0.00098  Score=52.79  Aligned_cols=81  Identities=10%  Similarity=-0.050  Sum_probs=57.2

Q ss_pred             CEEEEecChHHHHhHHHHHHHHHHHcCCcc---CCC---ccchhhhhccchhhhhhHHHHhcccceeeeeccccccCcHH
Q psy17794          1 MALLVLGDPEDVKNNEDKIYSIAKRYGGIP---AGE---SNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVL   74 (95)
Q Consensus         1 ~~~gfEG~~~~v~~~~~~~~~i~~~~GG~~---~G~---~~G~~W~~~rF~~PYLRd~l~~~g~~~dT~ETA~~Ws~~~~   74 (95)
                      +++-|+|+.++++.+.+++.+++.++|++.   +-.   +..+-| +.|-..+   ..+...|. ..+.+++||||++++
T Consensus       291 llve~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~a~~~~~~~~lW-~~R~~~~---~~~~~~g~-~~~~Dv~vP~~~l~~  365 (476)
T 3pm9_A          291 VLIELSSPRDDARAALESILERGFEDGIVVDAAIANSVQQQQAFW-KLREEIS---PAQKPEGG-SIKHDISVPVAAVPQ  365 (476)
T ss_dssp             EEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEECCSHHHHHHHH-HHHHTHH---HHTGGGCC-EECCEEECCGGGHHH
T ss_pred             EEEEEccCcHHHHHHHHHHHHHHHhcCCCcceEEeCCHHHHHHHH-HHHHHHH---HHHhhcCC-ceeEEEEeeHHHHHH
Confidence            367899988888888899999999998742   111   122344 4444333   12223454 688999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy17794         75 LCINVKKRLTRE   86 (95)
Q Consensus        75 l~~~V~~a~~~a   86 (95)
                      +++.+++.+.+.
T Consensus       366 ~~~~~~~~~~~~  377 (476)
T 3pm9_A          366 FIEQANAAVVAL  377 (476)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999998887765

>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A*

Probab=95.83  E-value=0.00078  Score=53.75  Aligned_cols=67  Identities=6%  Similarity=-0.151  Sum_probs=49.9

Q ss_pred             ec-ChHHHHhHHHHHHHHHHHcCCccCCCcc----------chhhhhccchhhhhhHHHHhcccceeeeeccccccCcHH
Q psy17794          6 LG-DPEDVKNNEDKIYSIAKRYGGIPAGESN----------GRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVL   74 (95)
Q Consensus         6 EG-~~~~v~~~~~~~~~i~~~~GG~~~G~~~----------G~~W~~~rF~~PYLRd~l~~~g~~~dT~ETA~~Ws~~~~   74 (95)
                      +| ++++++.+.+++.++++.+||.......          ...|...++..|.++.     .    +++++||||++++
T Consensus       324 ~g~~~~~v~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~W~~R~~~~~a~~~-----~----~~Dv~VP~s~l~~  394 (524)
T 2exr_A          324 DSDSNSTIDKRVERLIGRLRFNEGLRFEVDLPYVDFLLRVKRSEEIAKENGTWETPH-----P----WLNLFVSKRDIGD  394 (524)
T ss_dssp             TTSCHHHHHHHHHHHHTTCCCCTTCEEEEEEEHHHHHTTTHHHHHHHHHTTCSSSCC-----C----CEEEEEEHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCCCeEeecccchhhhhhhhhhHHHHhhhhcccccCC-----C----eeEEEECHHHHHH
Confidence            78 7788999999999999999997655322          2336666655554442     1    3699999999999


Q ss_pred             HHHHHHH
Q psy17794         75 LCINVKK   81 (95)
Q Consensus        75 l~~~V~~   81 (95)
                      +++.|++
T Consensus       395 ~~~~v~~  401 (524)
T 2exr_A          395 FNRTVFK  401 (524)
T ss_dssp             HHHHCCC
T ss_pred             HHHHHHH
Confidence            9988754

>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*

Probab=94.21  E-value=0.1  Score=41.26  Aligned_cols=78  Identities=12%  Similarity=-0.117  Sum_probs=47.5

Q ss_pred             EEEEecChHHHHhHHHHHHHHHHHcCCccCCCccchhhhhccchhhhhhHHHHh----------------cccceeeeec
Q psy17794          2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACD----------------YYFIGDSFET   65 (95)
Q Consensus         2 ~~gfEG~~~~v~~~~~~~~~i~~~~GG~~~G~~~G~~W~~~rF~~PYLRd~l~~----------------~g~~~dT~ET   65 (95)
                      ++.|+|++++++.+.+.+.++++++|+..+-.   ..+. .+-...++|+.++.                -+.+.++.-.
T Consensus       323 ~~~~~g~~~~v~~~~~~i~~~~~~~~~~~~~~---~~~~-~~~~~w~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v  398 (520)
T 1wvf_A          323 YAALYGTQEQVDVNWKIVTDVFKKLGKGRIVT---QEEA-GDTQPFKYRAQLMSGVPNLQEFGLYNWRGGGGSMWFAPVS  398 (520)
T ss_dssp             EEEEEESHHHHHHHHHHHHHHHHHHTCCEEEE---HHHH-TTCTTHHHHHHHHTTCCCCGGGGGGGSSCTEEEEEECBEE
T ss_pred             EEEEeCCHHHHHHHHHHHHHHHHHcCCeEEEe---cccc-hhhhHHHHHHHhhccCchhhhhccccccCCCceEEecccc
Confidence            45599999999999999999999999864321   1222 12334455554431                1122222333


Q ss_pred             cccccCcHHHHHHHHHHH
Q psy17794         66 SVPWDKTVLLCINVKKRL   83 (95)
Q Consensus        66 A~~Ws~~~~l~~~V~~a~   83 (95)
                      .++|++++++++.+++.+
T Consensus       399 p~~~~~l~~~~~~~~~~~  416 (520)
T 1wvf_A          399 EARGSECKKQAAMAKRVL  416 (520)
T ss_dssp             ESCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHH
Confidence            445588888887775544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	95
d1wvfa1	279	Flavoprotein subunit of p-cresol methylhydroxylase	97.93
d1e8ga1	287	Vanillyl-alcohol oxidase {Fungus (Penicillium simp	97.25

>d1wvfa1 d.58.32.1 (A:243-521) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: FAD-linked oxidases, C-terminal domain
family: Vanillyl-alcohol oxidase-like
domain: Flavoprotein subunit of p-cresol methylhydroxylase
species: Pseudomonas putida [TaxId: 303]

Probab=97.93  E-value=8.3e-06  Score=57.72  Aligned_cols=88  Identities=13%  Similarity=-0.030  Sum_probs=61.4

Q ss_pred             EEEEecChHHHHhHHHHHHHHHHHcCCccC---CCccc-hhhh---hccchhhhhhHHHHhc-----ccceeeeeccccc
Q psy17794          2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPA---GESNG-RRGY---MLTYIIAYIRDFACDY-----YFIGDSFETSVPW   69 (95)
Q Consensus         2 ~~gfEG~~~~v~~~~~~~~~i~~~~GG~~~---G~~~G-~~W~---~~rF~~PYLRd~l~~~-----g~~~dT~ETA~~W   69 (95)
                      ++.|+|++++|+.+.+++.++++++||..+   ..... +.|.   +..+..|+++...+.+     +.+..+-..+++|
T Consensus        82 ~~~l~G~~~~v~~~~~~i~~i~~~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~  161 (279)
T d1wvfa1          82 YAALYGTQEQVDVNWKIVTDVFKKLGKGRIVTQEEAGDTQPFKYRAQLMSGVPNLQEFGLYNWRGGGGSMWFAPVSEARG  161 (279)
T ss_dssp             EEEEEESHHHHHHHHHHHHHHHHHHTCCEEEEHHHHTTCTTHHHHHHHHTTCCCCGGGGGGGSSCTEEEEEECBEEESCH
T ss_pred             EEEeecCHHHHHHHHHHHHHHHHHCCCceEEeCCCHHHHHHHHHHHHhhhhhhhhhhhhHhhcCCCCCcceeeeeecCCH
Confidence            578899999999999999999999999654   11112 2332   2235567777666554     4555566678899


Q ss_pred             cCcHHHHHHHHHHHHHHHhhCCCC
Q psy17794         70 DKTVLLCINVKKRLTRECTGRWLP   93 (95)
Q Consensus        70 s~~~~l~~~V~~a~~~a~~~~g~~   93 (95)
                      |+++++++.+++.    +.++|.+
T Consensus       162 s~l~~~~~~~~~~----~~~~g~~  181 (279)
T d1wvfa1         162 SECKKQAAMAKRV----LHKYGLD  181 (279)
T ss_dssp             HHHHHHHHHHHHH----HHHTTCC
T ss_pred             HHHHHHHHHHHHH----HHHhCCC
Confidence            9999999877554    4445544

>d1e8ga1 d.58.32.1 (A:274-560) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: FAD-linked oxidases, C-terminal domain
family: Vanillyl-alcohol oxidase-like
domain: Vanillyl-alcohol oxidase
species: Fungus (Penicillium simplicissimum) [TaxId: 69488]

Probab=97.25  E-value=0.00026  Score=49.61  Aligned_cols=88  Identities=6%  Similarity=-0.236  Sum_probs=58.6

Q ss_pred             EEEEecChHHHHhHHHHHHHHHHHcCCccC--C--Cccchhhh-hccc------hhhhhhHHHHhcccceeeeecccccc
Q psy17794          2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPA--G--ESNGRRGY-MLTY------IIAYIRDFACDYYFIGDSFETSVPWD   70 (95)
Q Consensus         2 ~~gfEG~~~~v~~~~~~~~~i~~~~GG~~~--G--~~~G~~W~-~~rF------~~PYLRd~l~~~g~~~dT~ETA~~Ws   70 (95)
                      .+.|+|+++.|+.+.+.+.++++++||..+  .  ..-.+.|. ..++      ..|+..+...+.+..+.+.+++++++
T Consensus        81 ~~~l~G~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  160 (287)
T d1e8ga1          81 YGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRVRDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVSG  160 (287)
T ss_dssp             EEEEESCHHHHHHHHHHHHHHHTTSTTCEEECGGGSCTTCHHHHHHHHTTTCCCCGGGGGGGGSTTEEEEEECBEECSSH
T ss_pred             eeecccCHHHHHHHHHHHHHHHHHcCCcEEEecCCHHHHHHHHHHHHHhHhhhhhhhhhHHhhcCCCCeeeeeceeccCh
Confidence            578999999999999999999999999643  1  11222333 2222      22445555556777888889999986


Q ss_pred             C-cHHHHHHHHHHHHHHHhhCCCC
Q psy17794         71 K-TVLLCINVKKRLTRECTGRWLP   93 (95)
Q Consensus        71 ~-~~~l~~~V~~a~~~a~~~~g~~   93 (95)
                      + ++.+++.+    ++.+.++|..
T Consensus       161 ~~l~~~~~~~----~~~~~~~g~~  180 (287)
T d1e8ga1         161 EDAMMQYAVT----KKRCQEAGLD  180 (287)
T ss_dssp             HHHHHHHHHH----HHHHHHHTCC
T ss_pred             HHHHHHHHHH----HHHHHHcCCC
Confidence            4 77766665    4444444443