Query psy17795
Match_columns 523
No_of_seqs 553 out of 3212
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 23:17:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17795.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17795hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1460|consensus 100.0 9.2E-60 2E-64 444.3 28.7 394 92-523 1-407 (407)
2 KOG1322|consensus 100.0 1.2E-55 2.6E-60 423.6 26.5 354 93-523 9-371 (371)
3 COG1208 GCD1 Nucleoside-diphos 100.0 2.7E-50 5.8E-55 413.7 34.3 339 93-500 1-355 (358)
4 COG0448 GlgC ADP-glucose pyrop 100.0 8.4E-49 1.8E-53 390.5 29.5 329 92-458 4-363 (393)
5 PRK05293 glgC glucose-1-phosph 100.0 4E-46 8.7E-51 388.9 33.2 321 91-457 1-342 (380)
6 PLN02241 glucose-1-phosphate a 100.0 3.9E-45 8.5E-50 386.9 33.0 358 91-501 1-435 (436)
7 PRK00844 glgC glucose-1-phosph 100.0 6.6E-45 1.4E-49 382.2 33.4 331 91-458 3-383 (407)
8 TIGR01208 rmlA_long glucose-1- 100.0 6.6E-44 1.4E-48 368.5 34.3 310 95-457 1-322 (353)
9 COG1207 GlmU N-acetylglucosami 100.0 1.9E-43 4E-48 351.5 34.7 372 93-522 2-439 (460)
10 PRK02862 glgC glucose-1-phosph 100.0 7.3E-44 1.6E-48 376.2 32.2 327 91-458 1-395 (429)
11 PRK14355 glmU bifunctional N-a 100.0 1.5E-42 3.2E-47 370.5 39.2 378 91-521 1-438 (459)
12 PRK14358 glmU bifunctional N-a 100.0 2.8E-42 6.1E-47 369.2 38.1 376 92-520 6-439 (481)
13 PRK00725 glgC glucose-1-phosph 100.0 7.3E-43 1.6E-47 368.2 33.0 333 90-458 12-395 (425)
14 TIGR02092 glgD glucose-1-phosp 100.0 2.5E-43 5.3E-48 366.4 27.4 339 93-509 2-360 (369)
15 TIGR02091 glgC glucose-1-phosp 100.0 1.3E-42 2.8E-47 360.0 30.3 337 96-504 1-361 (361)
16 PRK14352 glmU bifunctional N-a 100.0 2.2E-41 4.7E-46 363.5 38.1 375 94-521 5-440 (482)
17 PRK14353 glmU bifunctional N-a 100.0 4.9E-40 1.1E-44 350.2 39.1 378 90-521 2-421 (446)
18 TIGR01173 glmU UDP-N-acetylglu 100.0 8.1E-40 1.7E-44 349.1 36.8 373 94-522 1-432 (451)
19 PRK14359 glmU bifunctional N-a 100.0 1.5E-39 3.2E-44 345.0 38.3 369 92-518 1-405 (430)
20 PRK09451 glmU bifunctional N-a 100.0 1.3E-39 2.9E-44 347.6 37.9 373 91-521 3-435 (456)
21 PRK14356 glmU bifunctional N-a 100.0 2.2E-39 4.7E-44 346.2 36.6 373 94-522 6-440 (456)
22 PRK14354 glmU bifunctional N-a 100.0 4.1E-38 8.9E-43 336.6 36.5 377 92-522 1-435 (458)
23 COG1209 RfbA dTDP-glucose pyro 100.0 1.5E-39 3.3E-44 307.8 19.2 228 94-367 1-237 (286)
24 PRK14357 glmU bifunctional N-a 100.0 2.9E-37 6.3E-42 329.1 36.6 368 94-522 1-425 (448)
25 PRK14360 glmU bifunctional N-a 100.0 1.1E-36 2.4E-41 324.9 39.0 374 94-522 2-432 (450)
26 KOG1461|consensus 100.0 5.8E-36 1.3E-40 308.9 29.2 358 93-507 24-423 (673)
27 TIGR01105 galF UTP-glucose-1-p 100.0 3.9E-35 8.4E-40 293.8 22.6 230 91-366 1-277 (297)
28 cd06428 M1P_guanylylT_A_like_N 100.0 1.1E-34 2.4E-39 286.6 22.4 246 96-364 1-256 (257)
29 KOG1462|consensus 100.0 6.1E-35 1.3E-39 286.0 18.5 351 91-516 7-414 (433)
30 PRK15480 glucose-1-phosphate t 100.0 5E-34 1.1E-38 285.1 22.2 229 92-366 2-241 (292)
31 PRK10122 GalU regulator GalF; 100.0 1.9E-33 4.1E-38 282.3 23.1 229 91-365 1-276 (297)
32 cd06425 M1P_guanylylT_B_like_N 100.0 2.3E-33 4.9E-38 273.2 20.6 225 94-366 1-233 (233)
33 PF00483 NTP_transferase: Nucl 100.0 6.6E-33 1.4E-37 272.2 20.9 228 95-367 1-247 (248)
34 TIGR01207 rmlA glucose-1-phosp 100.0 6.7E-33 1.5E-37 276.6 21.1 225 95-366 1-237 (286)
35 cd02538 G1P_TT_short G1P_TT_sh 100.0 1.2E-32 2.6E-37 269.3 22.0 225 94-365 1-237 (240)
36 PRK13389 UTP--glucose-1-phosph 100.0 4.3E-31 9.3E-36 265.6 21.8 225 94-365 9-279 (302)
37 cd02541 UGPase_prokaryotic Pro 100.0 4.9E-31 1.1E-35 262.0 21.2 229 94-366 1-265 (267)
38 TIGR01099 galU UTP-glucose-1-p 100.0 6E-31 1.3E-35 260.4 20.8 224 94-361 1-260 (260)
39 cd04189 G1P_TT_long G1P_TT_lon 100.0 3.5E-30 7.7E-35 251.0 22.5 226 94-367 1-235 (236)
40 TIGR02623 G1P_cyt_trans glucos 100.0 2.5E-30 5.5E-35 254.8 21.0 219 95-368 1-247 (254)
41 cd06422 NTP_transferase_like_1 100.0 3E-29 6.4E-34 242.2 19.6 210 95-361 1-221 (221)
42 COG1210 GalU UDP-glucose pyrop 100.0 1.4E-28 2.9E-33 233.4 17.9 233 91-367 2-271 (291)
43 cd02524 G1P_cytidylyltransfera 100.0 2.4E-28 5.2E-33 240.8 20.2 230 96-367 1-247 (253)
44 cd04181 NTP_transferase NTP_tr 100.0 5.7E-28 1.2E-32 232.0 21.2 209 96-353 1-217 (217)
45 cd06915 NTP_transferase_WcbM_l 100.0 8.3E-28 1.8E-32 231.7 20.7 214 96-361 1-222 (223)
46 cd06426 NTP_transferase_like_2 100.0 2.3E-27 4.9E-32 228.7 19.9 211 96-362 1-220 (220)
47 cd04197 eIF-2B_epsilon_N The N 99.9 2E-25 4.3E-30 214.9 17.4 173 94-293 1-217 (217)
48 cd02523 PC_cytidylyltransferas 99.9 5.5E-25 1.2E-29 213.6 17.7 221 96-362 1-229 (229)
49 cd04183 GT2_BcE_like GT2_BcbE_ 99.9 1.4E-23 3E-28 204.0 19.9 212 96-358 1-230 (231)
50 cd02508 ADP_Glucose_PP ADP-glu 99.9 4.8E-24 1E-28 202.7 15.5 184 96-352 1-200 (200)
51 cd02509 GDP-M1P_Guanylyltransf 99.9 3.7E-22 8E-27 198.7 20.8 233 94-357 1-273 (274)
52 cd02540 GT2_GlmU_N_bac N-termi 99.9 1.4E-21 3E-26 189.5 21.2 209 96-357 1-228 (229)
53 cd02507 eIF-2B_gamma_N_like Th 99.9 1.6E-21 3.4E-26 187.6 15.0 174 94-293 1-216 (216)
54 cd04198 eIF-2B_gamma_N The N-t 99.9 2.6E-21 5.6E-26 185.9 14.7 174 94-293 1-214 (214)
55 PRK05450 3-deoxy-manno-octulos 99.9 3.3E-20 7.2E-25 181.9 21.9 219 92-365 1-244 (245)
56 TIGR01479 GMP_PMI mannose-1-ph 99.9 1.9E-20 4.1E-25 199.4 19.9 237 94-361 1-280 (468)
57 cd02517 CMP-KDO-Synthetase CMP 99.9 5.3E-20 1.1E-24 179.8 21.3 214 94-363 2-238 (239)
58 COG1213 Predicted sugar nucleo 99.8 3E-20 6.5E-25 173.8 15.5 224 91-368 1-231 (239)
59 KOG3465|consensus 99.8 2.4E-20 5.2E-25 142.0 2.7 60 3-62 4-68 (86)
60 PRK13368 3-deoxy-manno-octulos 99.8 7.6E-18 1.6E-22 164.4 20.4 214 93-363 2-236 (238)
61 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.8 2.7E-18 5.8E-23 165.7 14.5 167 323-504 27-195 (231)
62 PRK15460 cpsB mannose-1-phosph 99.7 4.2E-17 9E-22 172.4 16.6 240 92-361 4-289 (478)
63 COG0836 {ManC} Mannose-1-phosp 99.7 1.2E-16 2.5E-21 155.7 18.2 240 94-361 2-281 (333)
64 PLN02917 CMP-KDO synthetase 99.7 4E-16 8.6E-21 156.3 21.1 232 82-367 34-289 (293)
65 COG4750 LicC CTP:phosphocholin 99.7 7.4E-16 1.6E-20 138.4 15.6 165 94-297 1-169 (231)
66 COG0663 PaaY Carbonic anhydras 99.7 2.5E-16 5.5E-21 141.9 11.9 119 391-521 14-141 (176)
67 cd05636 LbH_G1P_TT_C_like Puta 99.7 2E-15 4.3E-20 138.7 16.2 76 382-457 29-104 (163)
68 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.7 2.1E-15 4.6E-20 148.6 16.6 75 382-456 5-93 (254)
69 COG1044 LpxD UDP-3-O-[3-hydrox 99.7 1E-15 2.3E-20 150.6 14.1 136 381-516 104-254 (338)
70 cd05636 LbH_G1P_TT_C_like Puta 99.7 2.7E-15 5.9E-20 137.8 15.6 126 381-517 10-160 (163)
71 PRK12461 UDP-N-acetylglucosami 99.6 3.1E-15 6.8E-20 146.6 15.7 141 381-522 4-179 (255)
72 TIGR01852 lipid_A_lpxA acyl-[a 99.6 3E-15 6.6E-20 147.5 15.5 137 382-519 4-176 (254)
73 TIGR01852 lipid_A_lpxA acyl-[a 99.6 7.2E-15 1.6E-19 144.8 18.0 137 381-520 21-186 (254)
74 TIGR01853 lipid_A_lpxD UDP-3-O 99.6 6.4E-15 1.4E-19 149.5 17.7 135 381-515 96-246 (324)
75 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.6 4.4E-15 9.6E-20 146.3 15.9 121 381-502 22-171 (254)
76 PRK05289 UDP-N-acetylglucosami 99.6 6.1E-15 1.3E-19 145.7 15.4 78 381-458 7-98 (262)
77 cd03353 LbH_GlmU_C N-acetyl-gl 99.6 1.7E-14 3.8E-19 136.2 16.1 141 382-522 9-186 (193)
78 PRK05289 UDP-N-acetylglucosami 99.6 8.6E-15 1.9E-19 144.6 13.9 122 381-503 25-175 (262)
79 PRK00892 lpxD UDP-3-O-[3-hydro 99.6 1.4E-14 3.1E-19 148.8 16.0 134 381-514 105-253 (343)
80 PRK13627 carnitine operon prot 99.6 1.2E-14 2.6E-19 136.8 13.7 118 390-520 12-139 (196)
81 TIGR01853 lipid_A_lpxD UDP-3-O 99.6 2.1E-14 4.5E-19 145.8 15.6 139 381-520 114-293 (324)
82 TIGR02287 PaaY phenylacetic ac 99.6 1.6E-14 3.5E-19 135.5 13.6 118 390-520 10-137 (192)
83 cd04745 LbH_paaY_like paaY-lik 99.6 2E-14 4.3E-19 130.9 13.8 110 392-513 4-123 (155)
84 TIGR03308 phn_thr-fam phosphon 99.6 4.1E-14 8.9E-19 134.2 15.0 127 389-519 3-156 (204)
85 cd04646 LbH_Dynactin_6 Dynacti 99.6 4E-14 8.6E-19 130.0 14.4 112 391-514 2-129 (164)
86 COG1044 LpxD UDP-3-O-[3-hydrox 99.6 3.2E-14 7E-19 140.2 14.5 106 381-486 122-248 (338)
87 COG1043 LpxA Acyl-[acyl carrie 99.6 2.4E-14 5.1E-19 133.5 11.4 129 381-513 8-151 (260)
88 PLN02296 carbonate dehydratase 99.5 7.7E-14 1.7E-18 137.2 14.9 118 390-520 54-187 (269)
89 PF05486 SRP9-21: Signal recog 99.5 2E-15 4.3E-20 119.5 2.3 61 3-63 2-74 (79)
90 PLN02472 uncharacterized prote 99.5 1.3E-13 2.9E-18 133.7 14.9 118 391-521 62-195 (246)
91 cd00710 LbH_gamma_CA Gamma car 99.5 2.4E-13 5.3E-18 125.3 15.5 114 390-515 4-127 (167)
92 cd03352 LbH_LpxD UDP-3-O-acyl- 99.5 3.3E-13 7.1E-18 128.7 16.0 138 381-519 12-189 (205)
93 PRK00892 lpxD UDP-3-O-[3-hydro 99.5 2.8E-13 6.1E-18 139.3 16.0 138 381-519 123-300 (343)
94 COG1043 LpxA Acyl-[acyl carrie 99.5 1E-13 2.3E-18 129.3 10.6 125 388-517 3-137 (260)
95 TIGR00965 dapD 2,3,4,5-tetrahy 99.5 2.9E-13 6.3E-18 131.1 14.0 112 394-508 100-213 (269)
96 cd03350 LbH_THP_succinylT 2,3, 99.5 6.8E-13 1.5E-17 118.5 15.0 90 428-520 36-130 (139)
97 PRK12461 UDP-N-acetylglucosami 99.5 5.2E-13 1.1E-17 130.9 14.9 137 381-520 22-186 (255)
98 cd03353 LbH_GlmU_C N-acetyl-gl 99.5 9.8E-13 2.1E-17 124.2 15.5 127 381-513 26-187 (193)
99 cd04645 LbH_gamma_CA_like Gamm 99.5 7.1E-13 1.5E-17 120.4 13.8 110 392-513 3-122 (153)
100 cd04650 LbH_FBP Ferripyochelin 99.5 6.7E-13 1.4E-17 120.6 13.5 108 393-512 5-122 (154)
101 cd04646 LbH_Dynactin_6 Dynacti 99.5 1.1E-12 2.3E-17 120.5 14.3 110 381-501 10-133 (164)
102 TIGR01173 glmU UDP-N-acetylglu 99.5 5.5E-13 1.2E-17 142.5 14.0 123 381-505 272-426 (451)
103 cd04745 LbH_paaY_like paaY-lik 99.4 1.7E-12 3.6E-17 118.2 14.5 91 381-481 11-109 (155)
104 PRK11830 dapD 2,3,4,5-tetrahyd 99.4 1.8E-12 3.8E-17 126.9 15.5 94 426-522 135-233 (272)
105 TIGR02287 PaaY phenylacetic ac 99.4 1.2E-12 2.5E-17 122.9 12.9 117 381-517 19-143 (192)
106 cd03350 LbH_THP_succinylT 2,3, 99.4 3.8E-12 8.2E-17 113.7 15.4 110 381-504 6-125 (139)
107 PRK14353 glmU bifunctional N-a 99.4 1.2E-12 2.6E-17 139.8 14.1 122 382-504 274-415 (446)
108 PLN02296 carbonate dehydratase 99.4 2.4E-12 5.3E-17 126.6 13.8 117 381-517 63-193 (269)
109 cd03352 LbH_LpxD UDP-3-O-acyl- 99.4 6.7E-12 1.4E-16 119.7 16.1 138 381-521 30-200 (205)
110 PRK09382 ispDF bifunctional 2- 99.4 7.9E-12 1.7E-16 129.2 17.6 201 90-366 2-213 (378)
111 COG0663 PaaY Carbonic anhydras 99.4 2.5E-12 5.4E-17 116.1 11.8 96 381-486 22-125 (176)
112 PRK09451 glmU bifunctional N-a 99.4 3.1E-12 6.8E-17 136.9 14.8 120 395-519 324-443 (456)
113 PRK14359 glmU bifunctional N-a 99.4 2.7E-12 5.8E-17 136.4 13.9 108 406-518 298-415 (430)
114 TIGR00965 dapD 2,3,4,5-tetrahy 99.4 4.8E-12 1E-16 122.7 13.8 100 382-493 106-215 (269)
115 cd04650 LbH_FBP Ferripyochelin 99.4 9.5E-12 2.1E-16 113.0 15.0 96 381-486 11-114 (154)
116 TIGR00466 kdsB 3-deoxy-D-manno 99.4 5.6E-11 1.2E-15 116.0 20.5 209 96-358 2-237 (238)
117 PRK00155 ispD 2-C-methyl-D-ery 99.4 3.2E-11 6.9E-16 116.9 18.3 211 91-366 1-223 (227)
118 cd00710 LbH_gamma_CA Gamma car 99.4 1.3E-11 2.8E-16 113.8 14.7 110 381-503 13-132 (167)
119 cd04652 LbH_eIF2B_gamma_C eIF- 99.4 5.3E-12 1.1E-16 101.8 10.6 79 391-500 2-80 (81)
120 cd05824 LbH_M1P_guanylylT_C Ma 99.4 8.5E-12 1.8E-16 100.3 11.3 67 391-457 2-68 (80)
121 PLN02472 uncharacterized prote 99.4 1.2E-11 2.6E-16 120.1 14.4 77 381-457 70-160 (246)
122 PRK14355 glmU bifunctional N-a 99.3 1.2E-11 2.5E-16 132.6 15.3 131 381-514 279-441 (459)
123 cd03358 LbH_WxcM_N_like WcxM-l 99.3 9.2E-12 2E-16 107.9 11.8 115 391-520 1-116 (119)
124 PRK14356 glmU bifunctional N-a 99.3 6.4E-12 1.4E-16 134.5 13.0 120 384-505 283-434 (456)
125 cd04645 LbH_gamma_CA_like Gamm 99.3 1.7E-11 3.8E-16 111.3 13.9 96 381-486 10-113 (153)
126 TIGR00453 ispD 2-C-methyl-D-er 99.3 3.7E-11 8E-16 115.5 16.8 202 96-363 2-215 (217)
127 COG1207 GlmU N-acetylglucosami 99.3 5E-12 1.1E-16 127.4 10.2 95 401-507 263-358 (460)
128 KOG1462|consensus 99.3 3.7E-12 7.9E-17 126.3 8.7 95 383-508 329-423 (433)
129 cd03356 LbH_G1P_AT_C_like Left 99.3 1.6E-11 3.5E-16 98.3 10.7 67 390-457 1-67 (79)
130 TIGR03570 NeuD_NnaD sugar O-ac 99.3 2.1E-11 4.5E-16 115.4 13.3 72 428-511 122-194 (201)
131 KOG1461|consensus 99.3 4.8E-12 1E-16 132.4 9.4 75 382-457 327-401 (673)
132 PRK13627 carnitine operon prot 99.3 2.3E-11 5.1E-16 114.5 13.2 93 381-483 21-121 (196)
133 PRK14358 glmU bifunctional N-a 99.3 1.9E-11 4.1E-16 131.5 14.2 61 440-504 374-434 (481)
134 cd02516 CDP-ME_synthetase CDP- 99.3 8E-11 1.7E-15 113.1 16.8 204 95-360 2-217 (218)
135 cd03359 LbH_Dynactin_5 Dynacti 99.3 3.4E-11 7.4E-16 110.3 12.9 70 388-457 21-106 (161)
136 PRK14360 glmU bifunctional N-a 99.3 1.7E-11 3.7E-16 131.0 12.3 94 407-504 332-425 (450)
137 cd04652 LbH_eIF2B_gamma_C eIF- 99.3 2.9E-11 6.2E-16 97.5 10.5 79 409-517 2-80 (81)
138 PRK14352 glmU bifunctional N-a 99.3 3.5E-11 7.5E-16 129.7 14.3 76 424-503 358-433 (482)
139 cd04649 LbH_THP_succinylT_puta 99.3 7.8E-11 1.7E-15 103.7 12.7 39 467-508 72-111 (147)
140 PRK14357 glmU bifunctional N-a 99.3 3.5E-11 7.5E-16 128.6 12.7 94 410-504 310-418 (448)
141 cd03360 LbH_AT_putative Putati 99.3 9.3E-11 2E-15 110.0 14.0 53 441-504 133-185 (197)
142 PRK11830 dapD 2,3,4,5-tetrahyd 99.3 9.7E-11 2.1E-15 114.8 14.4 102 381-493 102-218 (272)
143 PRK10502 putative acyl transfe 99.2 6.3E-11 1.4E-15 110.7 12.4 100 390-504 53-159 (182)
144 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.2 6.4E-11 1.4E-15 114.5 12.0 113 381-515 91-213 (231)
145 PRK14354 glmU bifunctional N-a 99.2 7.9E-11 1.7E-15 126.2 13.8 111 391-505 319-429 (458)
146 cd05787 LbH_eIF2B_epsilon eIF- 99.2 7.6E-11 1.7E-15 94.2 10.3 66 391-457 2-67 (79)
147 cd05635 LbH_unknown Uncharacte 99.2 2E-10 4.4E-15 96.5 12.6 86 387-504 10-96 (101)
148 cd03356 LbH_G1P_AT_C_like Left 99.2 1.2E-10 2.7E-15 93.2 10.2 77 408-514 1-78 (79)
149 cd04651 LbH_G1P_AT_C Glucose-1 99.2 1.5E-10 3.2E-15 98.0 10.5 50 406-456 12-61 (104)
150 cd05787 LbH_eIF2B_epsilon eIF- 99.2 1.7E-10 3.6E-15 92.2 10.1 50 408-457 1-50 (79)
151 TIGR03536 DapD_gpp 2,3,4,5-tet 99.2 1.6E-10 3.4E-15 113.1 11.7 112 385-508 175-288 (341)
152 cd03360 LbH_AT_putative Putati 99.2 3.4E-10 7.3E-15 106.2 13.6 94 381-484 89-184 (197)
153 PF12804 NTP_transf_3: MobA-li 99.2 2.6E-10 5.5E-15 104.1 12.3 90 96-220 1-93 (160)
154 TIGR03570 NeuD_NnaD sugar O-ac 99.2 4.5E-10 9.8E-15 106.2 13.9 92 381-482 92-185 (201)
155 PLN02728 2-C-methyl-D-erythrit 99.2 2.3E-09 5.1E-14 105.1 18.9 67 90-161 21-88 (252)
156 TIGR00454 conserved hypothetic 99.1 3.9E-10 8.5E-15 105.4 12.4 62 94-162 1-62 (183)
157 PRK09677 putative lipopolysacc 99.1 4.9E-10 1.1E-14 105.6 13.1 95 424-521 66-180 (192)
158 PRK13385 2-C-methyl-D-erythrit 99.1 1.5E-09 3.3E-14 105.4 16.8 207 94-366 3-224 (230)
159 TIGR03308 phn_thr-fam phosphon 99.1 3.6E-10 7.9E-15 107.3 12.0 57 381-439 13-69 (204)
160 PRK09527 lacA galactoside O-ac 99.1 3.6E-10 7.7E-15 106.8 11.6 118 391-520 58-180 (203)
161 COG2171 DapD Tetrahydrodipicol 99.1 2.1E-10 4.6E-15 109.5 9.9 105 395-502 109-215 (271)
162 PF01128 IspD: 2-C-methyl-D-er 99.1 1.3E-08 2.8E-13 97.6 21.7 63 95-162 2-65 (221)
163 cd02513 CMP-NeuAc_Synthase CMP 99.1 1.9E-09 4.2E-14 103.8 15.9 167 95-294 3-187 (223)
164 PLN02694 serine O-acetyltransf 99.1 3E-10 6.4E-15 111.4 10.2 66 389-457 161-229 (294)
165 TIGR03535 DapD_actino 2,3,4,5- 99.1 7E-10 1.5E-14 108.1 12.5 109 387-507 152-262 (319)
166 PRK05293 glgC glucose-1-phosph 99.1 7.2E-10 1.6E-14 115.9 11.9 94 383-502 283-379 (380)
167 cd04182 GT_2_like_f GT_2_like_ 99.1 2E-09 4.4E-14 100.3 13.2 94 95-220 2-98 (186)
168 cd04651 LbH_G1P_AT_C Glucose-1 99.1 1.7E-09 3.8E-14 91.4 11.3 74 382-458 7-80 (104)
169 cd04649 LbH_THP_succinylT_puta 99.1 1.8E-09 3.9E-14 95.2 11.4 91 382-486 7-107 (147)
170 cd03359 LbH_Dynactin_5 Dynacti 99.1 3.3E-09 7.1E-14 97.2 13.8 110 393-514 6-135 (161)
171 PRK11132 cysE serine acetyltra 99.0 1.2E-09 2.6E-14 107.1 11.0 34 469-503 194-227 (273)
172 COG1211 IspD 4-diphosphocytidy 99.0 1.5E-08 3.3E-13 96.8 17.8 78 91-176 2-80 (230)
173 PRK10092 maltose O-acetyltrans 99.0 1.6E-09 3.4E-14 101.1 10.9 52 467-521 128-179 (183)
174 cd03357 LbH_MAT_GAT Maltose O- 99.0 3.1E-09 6.7E-14 98.2 11.8 105 405-522 61-169 (169)
175 cd04647 LbH_MAT_like Maltose O 99.0 3.9E-09 8.4E-14 89.7 11.3 102 389-521 2-108 (109)
176 PRK10502 putative acyl transfe 99.0 3.8E-09 8.3E-14 98.7 12.3 110 382-516 51-178 (182)
177 COG1212 KdsB CMP-2-keto-3-deox 99.0 3E-08 6.5E-13 92.4 17.5 221 92-366 2-243 (247)
178 cd05824 LbH_M1P_guanylylT_C Ma 99.0 4E-09 8.6E-14 84.7 10.1 47 411-457 4-51 (80)
179 cd03358 LbH_WxcM_N_like WcxM-l 99.0 5.2E-09 1.1E-13 90.5 11.5 73 384-457 12-84 (119)
180 TIGR03310 matur_ygfJ molybdenu 99.0 5.5E-09 1.2E-13 97.8 12.5 57 96-160 2-58 (188)
181 PLN02739 serine acetyltransfer 99.0 3E-09 6.6E-14 106.3 10.8 32 470-502 259-290 (355)
182 COG1045 CysE Serine acetyltran 99.0 3E-09 6.5E-14 97.4 9.3 33 469-502 120-152 (194)
183 PRK09527 lacA galactoside O-ac 99.0 1.1E-08 2.4E-13 96.6 13.4 83 387-481 74-162 (203)
184 TIGR03536 DapD_gpp 2,3,4,5-tet 98.9 7.6E-09 1.6E-13 101.5 12.1 93 382-486 178-284 (341)
185 TIGR03584 PseF pseudaminic aci 98.9 4.2E-08 9.2E-13 94.6 17.1 165 96-294 2-184 (222)
186 cd05635 LbH_unknown Uncharacte 98.9 7.9E-09 1.7E-13 86.8 10.3 75 381-457 22-96 (101)
187 PRK10191 putative acyl transfe 98.9 6.7E-09 1.5E-13 92.9 10.2 18 488-505 111-128 (146)
188 cd05825 LbH_wcaF_like wcaF-lik 98.9 1.7E-08 3.8E-13 85.8 11.7 52 467-521 55-106 (107)
189 PLN02241 glucose-1-phosphate a 98.9 9.9E-09 2.1E-13 109.2 12.1 104 393-510 304-433 (436)
190 PRK11132 cysE serine acetyltra 98.9 1.5E-08 3.3E-13 99.4 12.1 92 388-503 141-237 (273)
191 KOG4042|consensus 98.9 2.2E-09 4.8E-14 92.7 5.3 110 389-510 9-136 (190)
192 cd03354 LbH_SAT Serine acetylt 98.9 2E-08 4.4E-13 84.4 11.1 81 390-504 4-89 (101)
193 PLN02357 serine acetyltransfer 98.9 1E-08 2.3E-13 103.4 10.8 67 383-457 227-295 (360)
194 cd00208 LbetaH Left-handed par 98.9 1.5E-08 3.3E-13 80.2 9.7 66 390-455 2-77 (78)
195 PRK02862 glgC glucose-1-phosph 98.9 9.8E-09 2.1E-13 108.9 10.9 72 384-458 288-378 (429)
196 PRK09677 putative lipopolysacc 98.9 4.1E-08 8.9E-13 92.5 13.9 108 388-517 43-185 (192)
197 TIGR01172 cysE serine O-acetyl 98.9 1.6E-08 3.4E-13 92.7 10.8 41 471-513 116-156 (162)
198 PRK10191 putative acyl transfe 98.9 2.4E-08 5.3E-13 89.3 11.6 74 382-455 41-125 (146)
199 COG2266 GTP:adenosylcobinamide 98.9 2.4E-08 5.1E-13 89.9 11.1 61 94-162 1-61 (177)
200 COG1208 GCD1 Nucleoside-diphos 98.9 1.6E-08 3.5E-13 104.4 11.6 99 397-515 253-353 (358)
201 PLN02739 serine acetyltransfer 98.8 3.4E-08 7.5E-13 98.9 11.3 84 382-483 205-290 (355)
202 cd00208 LbetaH Left-handed par 98.8 4E-08 8.6E-13 77.8 9.5 34 468-502 44-77 (78)
203 TIGR03202 pucB xanthine dehydr 98.8 6.9E-08 1.5E-12 90.8 12.7 51 95-153 2-52 (190)
204 TIGR03535 DapD_actino 2,3,4,5- 98.8 5.7E-08 1.2E-12 95.0 11.8 90 382-486 159-259 (319)
205 COG0448 GlgC ADP-glucose pyrop 98.8 2.9E-08 6.3E-13 100.5 10.0 74 382-458 273-346 (393)
206 cd04180 UGPase_euk_like Eukary 98.8 1.1E-08 2.3E-13 101.3 6.7 81 96-181 3-93 (266)
207 PRK00317 mobA molybdopterin-gu 98.8 7.6E-08 1.6E-12 90.8 12.2 55 91-153 1-55 (193)
208 PRK00844 glgC glucose-1-phosph 98.8 3.3E-08 7.1E-13 104.3 10.4 54 403-457 312-365 (407)
209 COG2171 DapD Tetrahydrodipicol 98.8 3.9E-08 8.4E-13 94.2 9.8 96 381-486 113-218 (271)
210 TIGR01172 cysE serine O-acetyl 98.7 5.2E-08 1.1E-12 89.3 10.0 37 440-486 113-149 (162)
211 KOG3121|consensus 98.7 1.5E-08 3.3E-13 86.9 5.9 68 390-457 35-118 (184)
212 PLN02357 serine acetyltransfer 98.7 7.1E-08 1.5E-12 97.4 11.5 77 381-457 231-313 (360)
213 cd02503 MobA MobA catalyzes th 98.7 9.7E-08 2.1E-12 88.9 11.4 52 95-155 2-53 (181)
214 cd04193 UDPGlcNAc_PPase UDPGlc 98.7 3.3E-07 7.2E-12 93.0 15.6 192 93-298 15-256 (323)
215 PRK00725 glgC glucose-1-phosph 98.7 6E-08 1.3E-12 102.8 10.5 52 405-457 326-377 (425)
216 cd03357 LbH_MAT_GAT Maltose O- 98.7 1.9E-07 4.1E-12 86.2 12.0 17 440-456 118-134 (169)
217 TIGR02091 glgC glucose-1-phosp 98.7 8.6E-08 1.9E-12 99.5 10.9 75 382-457 283-361 (361)
218 cd03349 LbH_XAT Xenobiotic acy 98.7 1.8E-07 4E-12 83.9 11.0 38 466-504 71-108 (145)
219 PRK00560 molybdopterin-guanine 98.7 6.7E-07 1.5E-11 84.6 15.3 52 91-151 6-58 (196)
220 TIGR02092 glgD glucose-1-phosp 98.7 1.2E-07 2.6E-12 98.7 11.1 77 382-459 278-357 (369)
221 TIGR01208 rmlA_long glucose-1- 98.7 1.4E-07 3E-12 97.7 11.5 74 382-457 265-339 (353)
222 PRK10092 maltose O-acetyltrans 98.6 3.3E-07 7.2E-12 85.5 12.2 34 405-438 72-108 (183)
223 COG0110 WbbJ Acetyltransferase 98.6 2.8E-07 6E-12 86.6 11.7 37 467-504 123-159 (190)
224 COG1045 CysE Serine acetyltran 98.6 2.3E-07 4.9E-12 85.1 10.2 86 382-485 67-154 (194)
225 TIGR02665 molyb_mobA molybdopt 98.6 5.4E-07 1.2E-11 84.2 12.8 51 95-153 2-52 (186)
226 PLN02694 serine O-acetyltransf 98.6 2.4E-07 5.2E-12 91.2 10.2 37 466-503 210-246 (294)
227 cd03354 LbH_SAT Serine acetylt 98.6 2.9E-07 6.4E-12 77.3 9.4 76 382-457 8-89 (101)
228 cd05825 LbH_wcaF_like wcaF-lik 98.6 8.3E-07 1.8E-11 75.4 11.9 84 388-483 3-89 (107)
229 COG2068 Uncharacterized MobA-r 98.6 3.5E-07 7.6E-12 84.7 9.7 51 94-152 6-56 (199)
230 PRK02726 molybdopterin-guanine 98.6 5.7E-07 1.2E-11 85.4 11.5 51 92-151 6-56 (200)
231 PLN02474 UTP--glucose-1-phosph 98.5 5.9E-05 1.3E-09 79.6 26.3 192 93-297 79-308 (469)
232 COG1083 NeuA CMP-N-acetylneura 98.5 9.8E-07 2.1E-11 81.9 11.2 169 91-294 1-186 (228)
233 KOG4750|consensus 98.5 5.8E-07 1.3E-11 83.4 8.4 60 440-502 174-233 (269)
234 PTZ00339 UDP-N-acetylglucosami 98.5 6.8E-06 1.5E-10 87.2 17.4 190 93-296 106-349 (482)
235 cd04647 LbH_MAT_like Maltose O 98.4 1.2E-06 2.5E-11 74.4 9.3 74 383-456 2-92 (109)
236 PRK14489 putative bifunctional 98.4 1.6E-06 3.4E-11 90.1 11.8 58 93-158 5-62 (366)
237 KOG4042|consensus 98.4 2E-07 4.3E-12 80.8 4.0 76 382-457 20-112 (190)
238 cd03349 LbH_XAT Xenobiotic acy 98.3 4.5E-06 9.8E-11 74.9 10.3 58 439-518 72-129 (145)
239 COG0746 MobA Molybdopterin-gua 98.3 5.7E-06 1.2E-10 77.7 10.4 52 91-152 2-53 (192)
240 cd02518 GT2_SpsF SpsF is a gly 98.3 8.3E-06 1.8E-10 79.2 11.9 59 96-162 2-62 (233)
241 KOG1460|consensus 98.3 1.9E-06 4.1E-11 83.3 7.0 57 390-457 284-340 (407)
242 KOG3121|consensus 98.1 5.3E-06 1.1E-10 71.5 6.0 96 408-515 35-148 (184)
243 TIGR02353 NRPS_term_dom non-ri 98.1 1.6E-05 3.5E-10 89.1 10.1 30 472-502 164-193 (695)
244 TIGR02353 NRPS_term_dom non-ri 98.0 2.4E-05 5.3E-10 87.6 10.5 45 468-513 645-690 (695)
245 KOG1322|consensus 98.0 8.5E-06 1.9E-10 80.2 5.1 88 395-505 259-346 (371)
246 COG0110 WbbJ Acetyltransferase 97.9 0.00014 3.1E-09 68.1 11.9 33 440-482 124-156 (190)
247 PRK14490 putative bifunctional 97.9 1.5E-05 3.2E-10 83.0 5.4 52 92-152 173-224 (369)
248 cd00897 UGPase_euk Eukaryotic 97.8 0.0017 3.7E-08 65.1 17.8 190 95-297 5-232 (300)
249 COG4801 Predicted acyltransfer 97.8 0.00012 2.6E-09 68.5 8.7 97 411-518 21-118 (277)
250 PRK14500 putative bifunctional 97.7 5.4E-05 1.2E-09 77.7 5.4 50 93-151 160-209 (346)
251 KOG4750|consensus 97.7 7.6E-05 1.6E-09 69.6 5.6 36 440-485 200-235 (269)
252 PF02348 CTP_transf_3: Cytidyl 97.6 0.00037 8.1E-09 66.7 10.6 68 96-177 2-69 (217)
253 PF01704 UDPGP: UTP--glucose-1 97.6 0.0035 7.6E-08 65.9 17.6 193 94-298 57-288 (420)
254 PF07959 Fucokinase: L-fucokin 97.4 0.003 6.5E-08 66.6 14.1 213 237-461 78-322 (414)
255 PLN02435 probable UDP-N-acetyl 97.4 0.0023 5.1E-08 68.1 13.0 192 94-298 117-364 (493)
256 PF00132 Hexapep: Bacterial tr 97.3 0.00015 3.4E-09 48.3 2.0 25 394-418 7-31 (36)
257 COG1861 SpsF Spore coat polysa 97.2 0.0027 5.8E-08 59.6 10.5 62 94-162 3-66 (241)
258 PF00132 Hexapep: Bacterial tr 97.2 0.00023 5E-09 47.5 2.4 29 427-455 5-34 (36)
259 COG4284 UDP-glucose pyrophosph 97.0 0.018 3.8E-07 60.3 15.1 189 93-294 105-335 (472)
260 cd06424 UGGPase UGGPase cataly 97.0 0.0094 2E-07 60.1 12.6 187 96-295 3-249 (315)
261 PF14602 Hexapep_2: Hexapeptid 97.0 0.00084 1.8E-08 44.2 3.4 30 408-438 3-32 (34)
262 COG4801 Predicted acyltransfer 96.8 0.0049 1.1E-07 58.0 8.1 67 384-457 18-85 (277)
263 PRK13412 fkp bifunctional fuco 96.6 0.024 5.1E-07 65.1 12.9 63 237-299 176-247 (974)
264 KOG2638|consensus 96.3 0.79 1.7E-05 47.2 20.1 167 96-275 106-303 (498)
265 PLN02830 UDP-sugar pyrophospho 95.1 0.62 1.3E-05 51.4 15.5 154 93-259 128-323 (615)
266 PF07959 Fucokinase: L-fucokin 89.8 0.62 1.4E-05 49.3 6.1 52 395-447 274-325 (414)
267 PRK00576 molybdopterin-guanine 89.2 0.4 8.7E-06 44.2 3.7 35 116-152 3-39 (178)
268 KOG2388|consensus 74.5 5.8 0.00013 41.9 5.6 78 94-177 98-192 (477)
269 PRK13412 fkp bifunctional fuco 73.4 6.1 0.00013 46.0 5.9 40 94-135 92-137 (974)
270 TIGR03552 F420_cofC 2-phospho- 65.2 18 0.0004 33.5 6.5 33 126-161 30-62 (195)
271 PF04519 Bactofilin: Polymer-f 56.9 28 0.0006 28.7 5.4 21 429-449 36-56 (101)
272 cd00761 Glyco_tranf_GTA_type G 55.4 1E+02 0.0023 25.6 9.3 41 122-163 4-47 (156)
273 PF00535 Glycos_transf_2: Glyc 50.2 1.1E+02 0.0023 26.3 8.7 100 121-243 4-114 (169)
274 COG1664 CcmA Integral membrane 38.0 1.8E+02 0.004 25.9 7.9 17 441-457 85-101 (146)
275 COG1664 CcmA Integral membrane 33.4 99 0.0022 27.6 5.4 34 424-457 85-118 (146)
276 cd06903 lectin_EMP46_EMP47 EMP 31.0 1E+02 0.0022 29.4 5.5 35 10-45 145-179 (215)
277 PF04519 Bactofilin: Polymer-f 28.7 92 0.002 25.5 4.2 10 447-456 70-79 (101)
278 KOG1604|consensus 27.2 90 0.0019 31.8 4.4 35 14-48 260-294 (353)
279 PHA02745 hypothetical protein; 25.9 35 0.00077 32.6 1.3 45 12-56 130-179 (265)
280 PRK00923 sirohydrochlorin coba 25.4 93 0.002 26.6 3.8 24 125-149 44-67 (126)
281 PRK13738 conjugal transfer pil 23.8 1.6E+02 0.0035 28.0 5.3 56 92-151 97-155 (209)
282 cd07268 Glo_EDI_BRP_like_4 Thi 21.2 81 0.0018 28.2 2.5 29 19-47 104-138 (149)
No 1
>KOG1460|consensus
Probab=100.00 E-value=9.2e-60 Score=444.26 Aligned_cols=394 Identities=47% Similarity=0.828 Sum_probs=348.8
Q ss_pred cceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeE
Q psy17795 92 CGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINI 171 (523)
Q Consensus 92 ~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i 171 (523)
|..+||||.+|+-+||||+||+.+.||||+||+|+|||+|.++++.+.++..+|+++.-|+++.+.+|+....+++.+.+
T Consensus 1 ~~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~~e~~~pv 80 (407)
T KOG1460|consen 1 MKVKAVILVGGPQKGTRFRPLSFNVPKPLFPIAGVPMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQQEFKVPV 80 (407)
T ss_pred CceEEEEEecCCCCCccccccccCCCCCccccCCcchhhhhHHHHhcccchhheeEEecccchHHHHHHHHHHhhcccch
Confidence 45689999999999999999999999999999999999999999999999999999999999999999998777788999
Q ss_pred EEEecccccchhhhhcccccccccCCCchhHHH--Hhhcc-cCCcceEEEEc--cchHH----HHHHHHhcCCcceEEEE
Q psy17795 172 RYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLH-WVQEAVYFTLE--IRSDV----VILMHSLYSMAILVTVM 242 (523)
Q Consensus 172 ~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~-~~~d~~~Lvl~--i~~D~----l~~~h~~~~~~~~~tv~ 242 (523)
+|++++.++| ||+.|+ ++.|- +.++. ++++| ++||| |++.|+.++ ..++++
T Consensus 81 rYL~E~~plG-----------------taGgLyhFrdqIl~g~ps~-vFvlnaDVCcsfPl~~ml~ahr~~g--~~~tll 140 (407)
T KOG1460|consen 81 RYLREDNPLG-----------------TAGGLYHFRDQILAGSPSA-VFVLNADVCCSFPLQDMLEAHRRYG--GIGTLL 140 (407)
T ss_pred hhhccCCCCC-----------------cccceeehhhHHhcCCCce-EEEEecceecCCcHHHHHHHHhhcC--CceEEE
Confidence 9999999999 999999 77765 66777 99999 88888 999999988 999999
Q ss_pred EEeeCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhccccc-ccccccccccCCCC-C
Q psy17795 243 ATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQD-EFYNGNYMVNGKDT-D 320 (523)
Q Consensus 243 ~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~-e~~~~~~~~~~~~~-~ 320 (523)
++++.+++.++||.++.|++|++|+++.|||..+.++.++||+|+|++++|+.+.+.+...++ +-...+++ +-|. .
T Consensus 141 ~tkvs~e~asnfG~lV~dP~t~evlHYveKPsTfvSd~InCGvYlF~~eif~~i~~v~~q~~~~~~~~~~~~--~l~~g~ 218 (407)
T KOG1460|consen 141 VTKVSREQASNFGCLVEDPSTGEVLHYVEKPSTFVSDIINCGVYLFTPEIFNAIAEVYRQRQDLLEVEKDLP--LLQPGP 218 (407)
T ss_pred EEEecHhHhhccCeeeecCCcCceEEeecCcchhhhcccceeEEEecHHHHHHHHHHHHHHHhhhhhhhccc--ccCCCc
Confidence 999998899999999999889999999999999999999999999999999999887665422 00000111 1111 3
Q ss_pred cccccchhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhccHHHHhhhcccCCcccccCCC--ceEecCcEECCCCEEC
Q psy17795 321 FNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQLYKTRHPERLQCSSQ--CKTIGDVYIHSSASVH 398 (523)
Q Consensus 321 ~~~~~~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~an~~~l~~~~~~~~~~~~~~~~--~~i~~~~~i~~~~~I~ 398 (523)
.+...+++|++..|+.++++|+|...++|..+.|+.+.+.+++.||+.+....|.++...++ +.|.++++|+|++.++
T Consensus 219 ~d~irLeqDvlspLag~k~lY~y~t~~fW~QiKtagsal~as~lYLs~yk~t~p~~Lak~pgt~a~IigdVyIhPsakvh 298 (407)
T KOG1460|consen 219 ADFIRLEQDVLSPLAGSKQLYAYETTDFWSQIKTAGSALYASRLYLSQYKRTHPARLAKGPGTQAEIIGDVYIHPSAKVH 298 (407)
T ss_pred cceEEeechhhhhhcCCCceEEEecccHHHHhccccceeehhhhHHHHHhhcCchhhcCCCCCCceEEeeeEEcCcceeC
Confidence 45678899999999999999999999999999999999999999999988888877765444 4599999999999999
Q ss_pred CCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeec
Q psy17795 399 PTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFN 478 (523)
Q Consensus 399 ~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig 478 (523)
|+++||+|+.||+++.||+++.|.+|+|-++|.|.+|+.+.+|+||.++.||.++++.+....++...+..
T Consensus 299 ptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~pv~~s~~~~~~--------- 369 (407)
T KOG1460|consen 299 PTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIPVEPSPNLPFA--------- 369 (407)
T ss_pred CccccCCCceecCCceecCCceeeeeeeccCcEeeccceEEeeeecccccccceeeecccccccCCCCCcc---------
Confidence 99999999999999999999999999999999999999999999999999999999988765544322211
Q ss_pred CCCeecCCcEEeCCCCEECCCcEEeCeEEcCCcEeCCCCCCcccC
Q psy17795 479 SNGKLNPSITILGDGVTVPGELIVLNSIVLPYKELTRSFKNEILL 523 (523)
Q Consensus 479 ~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i~~~~~~~~i~ 523 (523)
..+++|+.|.+++.+.|.+|++.|+++++.++.++|||
T Consensus 370 -------a~Tilga~v~v~dev~v~~s~vlp~k~l~vs~~~eIil 407 (407)
T KOG1460|consen 370 -------ALTILGADVSVEDEVIVLNSIVLPNKELNVSVQDEIIL 407 (407)
T ss_pred -------eeEEecccceecceeEEeeeeEecCCccceeeecceeC
Confidence 22899999999999999999999999999999999986
No 2
>KOG1322|consensus
Probab=100.00 E-value=1.2e-55 Score=423.63 Aligned_cols=354 Identities=27% Similarity=0.436 Sum_probs=308.0
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhh-hhccCeeE
Q psy17795 93 GWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDM-VQEYKINI 171 (523)
Q Consensus 93 ~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~-~~~~~~~i 171 (523)
.|+||||.|| .||||+|||..+|||++|++++|||+|+++++.+. |+++|++.++|..+++..++.+. +.++|+++
T Consensus 9 ~vkaiILvGG--~GTRLrPLT~t~pKPlVpfgn~pmI~hqieal~ns-Gi~~I~la~~y~s~sl~~~~~k~y~~~lgVei 85 (371)
T KOG1322|consen 9 SVKAIILVGG--YGTRLRPLTLTRPKPLVPFGNKPMILHQIEALINS-GITKIVLATQYNSESLNRHLSKAYGKELGVEI 85 (371)
T ss_pred ceeEEEEecC--CCceeeceeccCCCcccccCcchhhHHHHHHHHhC-CCcEEEEEEecCcHHHHHHHHHHhhhccceEE
Confidence 5789999999 99999999999999999999999999999999985 99999999999888777777653 45678888
Q ss_pred EEEecccccchhhhhcccccccccCCCchhHHHHhhcccCCc-ceEEEEc--cc--hHH--HHHHHHhcCCcceEEEEEE
Q psy17795 172 RYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQE-AVYFTLE--IR--SDV--VILMHSLYSMAILVTVMAT 244 (523)
Q Consensus 172 ~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~~~~i~~~~d-~~~Lvl~--i~--~D~--l~~~h~~~~~~~~~tv~~~ 244 (523)
.+..|.+++ |.+| ++++++ +++....+ + |+||| ++ +|+ |+++|++++ ++.|++++
T Consensus 86 ~~s~etepl------------gtaG--pl~laR-~~L~~~~~~~-ffVLnsDvi~~~p~~~~vqfH~~~g--ae~TI~~t 147 (371)
T KOG1322|consen 86 LASTETEPL------------GTAG--PLALAR-DFLWVFEDAP-FFVLNSDVICRMPYKEMVQFHRAHG--AEITIVVT 147 (371)
T ss_pred EEEeccCCC------------cccc--hHHHHH-HHhhhcCCCc-EEEecCCeeecCCHHHHHHHHHhcC--CceEEEEE
Confidence 888887765 4566 666665 55542223 6 99999 54 455 999999999 99999999
Q ss_pred eeCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCCCCcccc
Q psy17795 245 EATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHI 324 (523)
Q Consensus 245 ~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 324 (523)
+++ +|++||.++.|+++|+|.+|.|||++..++.+++|+|+|+|++++.|+. + ..
T Consensus 148 ~vd--epSkyGvv~~d~~~grV~~F~EKPkd~vsnkinaGiYi~~~~vL~ri~~-~----------------------pt 202 (371)
T KOG1322|consen 148 KVD--EPSKYGVVVIDEDTGRVIRFVEKPKDLVSNKINAGIYILNPEVLDRILL-R----------------------PT 202 (371)
T ss_pred ecc--CccccceEEEecCCCceeEehhCchhhhhccccceEEEECHHHHhHhhh-c----------------------cc
Confidence 995 5899999999996799999999999999999999999999999988863 1 13
Q ss_pred cchhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhccHHHHhhhcccCCcccccCCCceEecCcEECCCCEECCCCEEC
Q psy17795 325 QLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQLYKTRHPERLQCSSQCKTIGDVYIHSSASVHPTAIVG 404 (523)
Q Consensus 325 ~~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~an~~~l~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~ 404 (523)
+|+++++|.+++..+++++.++|||+|+|+|.||+.+...|++......|.++. +++.+.+++.+.+.+.++.+|.|+
T Consensus 203 SiekEifP~~a~~~~l~a~~l~gfWmDIGqpkdf~~g~~~Yl~s~~~~t~~r~~--p~~~i~~nvlvd~~~~iG~~C~Ig 280 (371)
T KOG1322|consen 203 SIEKEIFPAMAEEHQLYAFDLPGFWMDIGQPKDFLTGFSFYLRSLPKYTSPRLL--PGSKIVGNVLVDSIASIGENCSIG 280 (371)
T ss_pred chhhhhhhhhhhcCceEEEecCchhhhcCCHHHHHHHHHHHHhhCcccCCcccc--CCccccccEeeccccccCCccEEC
Confidence 488999999999999999999999999999999999999898876655555554 468889999999999999999999
Q ss_pred CCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeec
Q psy17795 405 PNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLN 484 (523)
Q Consensus 405 ~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~ 484 (523)
++++||++|+|++++.|.+|+|..+..++.++.|..+++|.++.||.++.|.+.
T Consensus 281 ~~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~~IG~~~~id~~-------------------------- 334 (371)
T KOG1322|consen 281 PNVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWNVPIGIWARIDKN-------------------------- 334 (371)
T ss_pred CCceECCCcEecCceEEEeeEEEccceechhHHHHhhhccccccccCceEEecc--------------------------
Confidence 999999999999999999999999999999999999999999999999988763
Q ss_pred CCcEEeCCCCEECCCcEEeCeEEcCCcEeCCCCC-CcccC
Q psy17795 485 PSITILGDGVTVPGELIVLNSIVLPYKELTRSFK-NEILL 523 (523)
Q Consensus 485 ~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i~~~~~-~~~i~ 523 (523)
++||++++|.+.-.+.++.+.|++.+...++ +.+||
T Consensus 335 ---a~lG~nV~V~d~~~vn~g~~l~~ks~~~~v~~~~iI~ 371 (371)
T KOG1322|consen 335 ---AVLGKNVIVADEDYVNEGSGLPIKSGITVVLKPAIIM 371 (371)
T ss_pred ---cEeccceEEecccccccceeEEeccceeecccccccC
Confidence 8889999998888887788889988888886 55543
No 3
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-50 Score=413.71 Aligned_cols=339 Identities=27% Similarity=0.465 Sum_probs=281.9
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEE
Q psy17795 93 GWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIR 172 (523)
Q Consensus 93 ~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~ 172 (523)
.|+||||||| +||||+|||..+||||+||+|+|||+|+|+.|.+. |+++++|+++|..+++++||++. ..+++++.
T Consensus 1 ~mkavILagG--~GtRLrPlT~~~PKPllpI~gkPii~~~l~~L~~~-Gv~eivi~~~y~~~~i~~~~~d~-~~~~~~I~ 76 (358)
T COG1208 1 PMKAVILAGG--YGTRLRPLTDDRPKPLLPIAGKPLIEYVLEALAAA-GVEEIVLVVGYLGEQIEEYFGDG-EGLGVRIT 76 (358)
T ss_pred CceEEEEeCC--ccccccccccCCCcccceeCCccHHHHHHHHHHHC-CCcEEEEEeccchHHHHHHHhcc-cccCCceE
Confidence 3789999999 99999999999999999999999999999999986 99999999999999999999984 45688999
Q ss_pred EEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--cchH--H--HHHHHHhcCCcceEEEEEE
Q psy17795 173 YLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--IRSD--V--VILMHSLYSMAILVTVMAT 244 (523)
Q Consensus 173 ~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i~~D--~--l~~~h~~~~~~~~~tv~~~ 244 (523)
|+.+.+++| ||++|+ .+++.. ++ |+++| +++| + ++++|+++. +.+++...
T Consensus 77 y~~e~~~lG-----------------Tag~l~~a~~~l~~--~~-f~v~~GDv~~~~dl~~l~~~~~~~~--~~~~~~~~ 134 (358)
T COG1208 77 YVVEKEPLG-----------------TAGALKNALDLLGG--DD-FLVLNGDVLTDLDLSELLEFHKKKG--ALATIALT 134 (358)
T ss_pred EEecCCcCc-----------------cHHHHHHHHHhcCC--Cc-EEEEECCeeeccCHHHHHHHHHhcc--CccEEEEE
Confidence 999999999 999999 777763 56 99999 5555 4 899999887 88888888
Q ss_pred eeCCCCCcceeEEEEcCCCCcEEEEeecCC--CcccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCCCCcc
Q psy17795 245 EATRQQSVYYGCIVRKQQTSEISHYVEKPS--TFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFN 322 (523)
Q Consensus 245 ~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~--~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~~~~ 322 (523)
++. ++..||.+..++++++|.+|.|||. ...++++++|+|+|++++|+.+.. ..
T Consensus 135 ~~~--~~~~~Gvv~~~~~~~~v~~f~ekp~~~~~~~~~in~Giyi~~~~v~~~i~~----------------------~~ 190 (358)
T COG1208 135 RVL--DPSEFGVVETDDGDGRVVEFREKPGPEEPPSNLINAGIYIFDPEVFDYIEK----------------------GE 190 (358)
T ss_pred ecC--CCCcCceEEecCCCceEEEEEecCCCCCCCCceEEeEEEEECHHHhhhccc----------------------CC
Confidence 775 3478999988854369999999993 567899999999999999995433 13
Q ss_pred cccchhhhhhhhhcCCc-EEEEEcchhHhhhccchhhhhccHHHHhhhcccCCcccc-----cCCCceEecCcEECCCCE
Q psy17795 323 HIQLEKEIIMPLAGSGK-AYVYQTSKWWSQLKSAGSAIYANRHYLQLYKTRHPERLQ-----CSSQCKTIGDVYIHSSAS 396 (523)
Q Consensus 323 ~~~~~~dil~~li~~g~-v~~~~~~g~w~dIgt~~dyl~an~~~l~~~~~~~~~~~~-----~~~~~~i~~~~~i~~~~~ 396 (523)
..+|+.++++.+++.+. ++++.++++|.|+++|++|++++..+++........... ... +.+.++++|+++|.
T Consensus 191 ~~~~~~~~~~~l~~~~~~v~~~~~~g~W~dig~p~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~gp~~ig~~~~ 269 (358)
T COG1208 191 RFDFEEELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVIIRS-AYIIGPVVIGPGAK 269 (358)
T ss_pred cccchhhHHHHHHhCCCcEEEEEeCCeEEeCCCHHHHHHHHHHHHhccccccccccccccccccc-ceEeCCEEECCCCE
Confidence 34566789999999998 999999999999999999999999998644322111111 012 78999999999999
Q ss_pred ECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCe
Q psy17795 397 VHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPL 476 (523)
Q Consensus 397 I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ 476 (523)
|++++.|+++++||++|.|++++.|.+|+|+++|.|++++.|.+|+||++|.||++. . +++ +.
T Consensus 270 i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi~~~~~ig~~~-~---------------i~d-~~ 332 (358)
T COG1208 270 IGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGENCKIGASL-I---------------IGD-VV 332 (358)
T ss_pred ECCCCEECCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEeeeEEcCCcEECCce-e---------------ecc-eE
Confidence 999999999999999999999999999999999999999999999999999999811 1 455 55
Q ss_pred ecCCCeecCCcEEeCCCCEECCCc
Q psy17795 477 FNSNGKLNPSITILGDGVTVPGEL 500 (523)
Q Consensus 477 ig~~~~i~~g~~iIG~~~~Ig~~~ 500 (523)
+|.++.+.+| ++++.++.++.+.
T Consensus 333 ~g~~~~i~~g-~~~~~~~~~~~~~ 355 (358)
T COG1208 333 IGINSEILPG-VVVGPGSVVESGE 355 (358)
T ss_pred ecCceEEcCc-eEeCCCccccCcc
Confidence 5555555555 4445444444443
No 4
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.4e-49 Score=390.54 Aligned_cols=329 Identities=23% Similarity=0.359 Sum_probs=265.4
Q ss_pred cceeEEEEecCCCCCCcCCCCCCCCCcccceeCCc-chHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCe-
Q psy17795 92 CGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGL-PMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKI- 169 (523)
Q Consensus 92 ~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~-pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~- 169 (523)
..+-|+|||+| +|+||.|||..++||-+|++|| .||+++|+++.++ |+++|.|+++|+.-.|.+|++.. ..|++
T Consensus 4 ~~~laiILaGg--~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNS-Gi~~I~VltQy~~~SL~~Hi~~G-~~w~l~ 79 (393)
T COG0448 4 KNVLAIILAGG--RGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNS-GIRRIGVLTQYKSHSLNDHIGRG-WPWDLD 79 (393)
T ss_pred cceEEEEEcCC--CCCccchhhhCccccccccCceeEEEeEEccccccc-CCCeEEEEeccchhHHHHHhhCC-Cccccc
Confidence 34669999999 9999999999999999999998 9999999999985 99999999999888999999985 55643
Q ss_pred ----eEEEEecccccchhhhhcccccccccCCCchhHHH--Hhhcc-cCCcceEEEEc----cchHH--HHHHHHhcCCc
Q psy17795 170 ----NIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLH-WVQEAVYFTLE----IRSDV--VILMHSLYSMA 236 (523)
Q Consensus 170 ----~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~-~~~d~~~Lvl~----i~~D~--l~~~h~~~~~~ 236 (523)
.+.++..... ...+.||+| ||+|++ ..++. ..+|+ +||++ +.+|+ |+++|.+.+
T Consensus 80 ~~~~~v~ilp~~~~--------~~~~~wy~G--tadai~Qnl~~i~~~~~ey-vlIlsgDhIYkmDy~~ml~~H~~~g-- 146 (393)
T COG0448 80 RKNGGVFILPAQQR--------EGGERWYEG--TADAIYQNLLIIRRSDPEY-VLILSGDHIYKMDYSDMLDFHIESG-- 146 (393)
T ss_pred cccCcEEEeCchhc--------cCCCcceec--cHHHHHHhHHHHHhcCCCE-EEEecCCEEEecCHHHHHHHHHHcC--
Confidence 2444432211 123679999 999999 55555 56788 99998 55888 999999999
Q ss_pred ceEEEEEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCC-cccc-eeeeeEEEeeHHHHHHH-HHhhccccccccccccc
Q psy17795 237 ILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPST-FVST-LVNCGVYLFSLDIFQNI-AAVFQSKQDEFYNGNYM 313 (523)
Q Consensus 237 ~~~tv~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~-~~~~-l~~~Giyif~~~il~~l-~~~~~~~~~e~~~~~~~ 313 (523)
+++|+++.+++..++++||.+.+|++ ++|++|.|||.. +.++ ++++|+|+|+.++|..+ .+....
T Consensus 147 adiTv~~~~Vp~~eas~fGim~~D~~-~~i~~F~eKp~~~~~~~~laSMgiYIf~~~~L~~~L~~~~~~----------- 214 (393)
T COG0448 147 ADVTVAVKEVPREEASRFGVMNVDEN-GRIIEFVEKPADGPPSNSLASMGIYIFNTDLLKELLEEDAKD----------- 214 (393)
T ss_pred CCEEEEEEECChHhhhhcCceEECCC-CCEEeeeeccCcCCcccceeeeeeEEEcHHHHHHHHHHHhcc-----------
Confidence 99999999999889999999999998 999999999987 4444 89999999999976544 432211
Q ss_pred ccCCCCCcccccchhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhccHHHHhhhc------ccCCcccccC--CCceE
Q psy17795 314 VNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQLYK------TRHPERLQCS--SQCKT 385 (523)
Q Consensus 314 ~~~~~~~~~~~~~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~an~~~l~~~~------~~~~~~~~~~--~~~~i 385 (523)
..+..+|..+++|.+.+++.+++|+++|||.|++|.++|++||+++++... ..+|.+.... |.+.+
T Consensus 215 ------~~~~~DfgkdiIp~~~~~~~v~AY~f~gYw~dVgTi~syy~aNmdLl~~~~~~~lyd~~w~IyT~~~~~pPak~ 288 (393)
T COG0448 215 ------PNSSHDFGKDIIPKLLERGKVYAYEFSGYWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPIYTKNKNLPPAKF 288 (393)
T ss_pred ------cCccccchHHHHHHHHhcCCEEEEeccchhhhcccHHHHHHhhHHhcCCCCcccccCCCCceeecCCCCCCceE
Confidence 124467889999999999999999999999999999999999999997321 1122221111 33333
Q ss_pred e-----cCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCC
Q psy17795 386 I-----GDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGT 458 (523)
Q Consensus 386 ~-----~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~ 458 (523)
. .++.|+.+|+|.. .| .+++|+.++.|+++|+|.+|+|+.+|.||++|+|.++||+++|.|++|++|++.
T Consensus 289 ~~~s~v~nSLv~~GciI~G--~V-~nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~~aIIDk~v~I~~g~~i~~~ 363 (393)
T COG0448 289 VNDSEVSNSLVAGGCIISG--TV-ENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRRAIIDKNVVIGEGVVIGGD 363 (393)
T ss_pred ecCceEeeeeeeCCeEEEe--EE-EeeEEecCeEECCCCEEEeeEEeCCcEECCCCEEEEEEeCCCcEeCCCcEEcCC
Confidence 3 3344555555554 33 688999999999999999999999999999999999999999999999999875
No 5
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=4e-46 Score=388.87 Aligned_cols=321 Identities=19% Similarity=0.296 Sum_probs=229.0
Q ss_pred ccceeEEEEecCCCCCCcCCCCCCCCCcccceeCCc-chHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCe
Q psy17795 91 SCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGL-PMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKI 169 (523)
Q Consensus 91 ~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~-pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~ 169 (523)
|-+|+||||||| +||||+|||..+||||+||+|+ |||+|+|++|.+. |+++|+|+++|+.+++++|+++. .+|++
T Consensus 1 ~~~m~avILAaG--~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~-Gi~~i~iv~~~~~~~i~~~~~~~-~~~~~ 76 (380)
T PRK05293 1 KKEMLAMILAGG--QGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANS-GIDTVGVLTQYQPLELNNHIGIG-SPWDL 76 (380)
T ss_pred CCcEEEEEECCC--CCcccchhhcCCccceeeeCCceeehhHHHHHHHhC-CCCEEEEEecCCHHHHHHHHhCC-Ccccc
Confidence 346999999999 9999999999999999999999 8999999999996 99999999999999999999763 44653
Q ss_pred e-----EEE----EecccccchhhhhcccccccccCCCchhHHH--Hhhccc-CCcceEEEEc--cc--hHH--HHHHHH
Q psy17795 170 N-----IRY----LQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHW-VQEAVYFTLE--IR--SDV--VILMHS 231 (523)
Q Consensus 170 ~-----i~~----~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~-~~d~~~Lvl~--i~--~D~--l~~~h~ 231 (523)
+ +.+ ..+.+ .+|+.| ||+|++ ++++.. .+++ |||++ .+ .|+ +++.|+
T Consensus 77 ~~~~~~~~i~~~~~~~~~------------~~~~~G--ta~al~~a~~~l~~~~~~~-~lV~~gD~l~~~d~~~ll~~h~ 141 (380)
T PRK05293 77 DRINGGVTILPPYSESEG------------GKWYKG--TAHAIYQNIDYIDQYDPEY-VLILSGDHIYKMDYDKMLDYHK 141 (380)
T ss_pred cCCCCCEEEeCCcccCCC------------CcccCC--cHHHHHHHHHHHHhCCCCE-EEEecCCEEEcCCHHHHHHHHH
Confidence 2 222 22211 235556 999999 777752 2356 88888 44 345 788888
Q ss_pred hcCCcceEEEEEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHH-HHHhhcccccccccc
Q psy17795 232 LYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQN-IAAVFQSKQDEFYNG 310 (523)
Q Consensus 232 ~~~~~~~~tv~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~-l~~~~~~~~~e~~~~ 310 (523)
+.+ +++|+++...+.+++.+||.+..|++ ++|.+|.|||..+.++++++|+|+|++++|.. +.+.....
T Consensus 142 ~~~--~~~tl~~~~~~~~~~~~yG~v~~d~~-g~V~~~~eKp~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~------- 211 (380)
T PRK05293 142 EKE--ADVTIAVIEVPWEEASRFGIMNTDEN-MRIVEFEEKPKNPKSNLASMGIYIFNWKRLKEYLIEDEKNP------- 211 (380)
T ss_pred hcC--CCEEEEEEEcchhhccccCEEEECCC-CcEEEEEeCCCCCCcceeeeEEEEEcHHHHHHHHHHHhhcC-------
Confidence 877 78888877665456789999999876 89999999998777889999999999998754 43321111
Q ss_pred cccccCCCCCcccccchhhhhhhhhcCC-cEEEEEcchhHhhhccchhhhhccHHHHhhhcccCCcccccCCCceEecCc
Q psy17795 311 NYMVNGKDTDFNHIQLEKEIIMPLAGSG-KAYVYQTSKWWSQLKSAGSAIYANRHYLQLYKTRHPERLQCSSQCKTIGDV 389 (523)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~dil~~li~~g-~v~~~~~~g~w~dIgt~~dyl~an~~~l~~~~~~~~~~~~~~~~~~i~~~~ 389 (523)
....+|.+|+++.+++++ +++++..+++|.|++++++|+++++.++....... ... +...+.+.+
T Consensus 212 ----------~~~~~~~~d~i~~l~~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l~~~~~~~--~~~--~~~~~~~~~ 277 (380)
T PRK05293 212 ----------NSSHDFGKNVIPLYLEEGEKLYAYPFKGYWKDVGTIESLWEANMELLRPENPLN--LFD--RNWRIYSVN 277 (380)
T ss_pred ----------CchhhhHHHHHHHHhhcCCeEEEEEeCCEEEeCCCHHHHHHHHHHHcCCCchhh--hcC--CCCceecCC
Confidence 122345579999999876 49999999999999999999999998885422110 000 011222223
Q ss_pred EECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcC
Q psy17795 390 YIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEG 457 (523)
Q Consensus 390 ~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~ 457 (523)
.+.+.+.|++++.| .++.||++|.|+. .+.+|+||++|.||++|+|.+|+|+++|.|+++|.|.+
T Consensus 278 ~~~~~~~i~~~~~i-~~~~Ig~~~~I~~--~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~ 342 (380)
T PRK05293 278 PNLPPQYIAENAKV-KNSLVVEGCVVYG--TVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIER 342 (380)
T ss_pred cCCCCCEECCCCEE-ecCEECCCCEEcc--eecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeE
Confidence 33334444444444 3455556665542 34556666666666666666666666666666666644
No 6
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=100.00 E-value=3.9e-45 Score=386.88 Aligned_cols=358 Identities=16% Similarity=0.290 Sum_probs=261.9
Q ss_pred ccceeEEEEecCCCCCCcCCCCCCCCCcccceeCCc-chHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccC-
Q psy17795 91 SCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGL-PMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYK- 168 (523)
Q Consensus 91 ~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~-pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~- 168 (523)
|..|+||||||| +|+||+|||..+||||+||+|+ |||+|+|+++.++ |+++|+|++++..+++.+|+.+.+ .|+
T Consensus 1 ~~~~~aIIlA~G--~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~-Gi~~i~iv~~~~~~~i~~~l~~~~-~~~~ 76 (436)
T PLN02241 1 PKSVAAIILGGG--AGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINS-GINKIYVLTQFNSASLNRHLSRAY-NFGN 76 (436)
T ss_pred CCceEEEEEeCC--CCCcchhhhcCCcccceEeCCcceEehHHHHHHHhC-CCCEEEEEeccCHHHHHHHHhccC-CCCC
Confidence 457899999999 9999999999999999999997 9999999999996 999999999999999999998631 122
Q ss_pred --------eeEEEEecccccchhhhhcccccccccCCCchhHHH--HhhcccC----CcceEEEEc--cc--hHH--HHH
Q psy17795 169 --------INIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWV----QEAVYFTLE--IR--SDV--VIL 228 (523)
Q Consensus 169 --------~~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~----~d~~~Lvl~--i~--~D~--l~~ 228 (523)
+.+.+..+.+. ...|+.| |+++++ +.++... .++ ||+++ .+ .|+ +++
T Consensus 77 ~~~~~~~~~~i~~~~q~~~----------~~~~~lG--t~~al~~~~~~~~~~~~~~~~~-~lv~~gD~v~~~dl~~ll~ 143 (436)
T PLN02241 77 GGNFGDGFVEVLAATQTPG----------EKGWFQG--TADAVRQFLWLFEDAKNKNVEE-VLILSGDHLYRMDYMDFVQ 143 (436)
T ss_pred CcccCCCCEEEcCCcccCC----------CCccccC--cHHHHHHHHHHHHhcccCCCCE-EEEecCCeEEccCHHHHHH
Confidence 22212222110 0124445 999998 5555421 367 89988 43 455 889
Q ss_pred HHHhcCCcceEEEEEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCCcc---------------------cceeeeeEEE
Q psy17795 229 MHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFV---------------------STLVNCGVYL 287 (523)
Q Consensus 229 ~h~~~~~~~~~tv~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~---------------------~~l~~~Giyi 287 (523)
+|++.+ +++|+++.+++.+++.+||++.+|++ ++|.+|.|||..+. .+++++|+|+
T Consensus 144 ~h~~~~--a~~ti~~~~v~~~~~~~ygvv~~d~~-~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi 220 (436)
T PLN02241 144 KHRESG--ADITIACLPVDESRASDFGLMKIDDT-GRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYV 220 (436)
T ss_pred HHHHcC--CCEEEEEEecchhhcCcceEEEECCC-CCEEEEEECCCCcccccccccccccccccccccccceEEEeEEEE
Confidence 999888 88999998886556789999999876 89999999986432 3799999999
Q ss_pred eeHHHHHHH-HHhhcccccccccccccccCCCCCcccccchhhhhhhhhcCC-cEEEEEcchhHhhhccchhhhhccHHH
Q psy17795 288 FSLDIFQNI-AAVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSG-KAYVYQTSKWWSQLKSAGSAIYANRHY 365 (523)
Q Consensus 288 f~~~il~~l-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~dil~~li~~g-~v~~~~~~g~w~dIgt~~dyl~an~~~ 365 (523)
|++++|..+ .+.+.. ..+|.+|+++.++++| ++++|.+++||.|++++++|+++++.+
T Consensus 221 ~~~~~l~~ll~~~~~~--------------------~~~~~~dil~~l~~~g~~v~~~~~~gyw~dIg~~~~y~~a~~~~ 280 (436)
T PLN02241 221 FKKDVLLKLLRWRFPT--------------------ANDFGSEIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLAL 280 (436)
T ss_pred EEHHHHHHHHHhhccc--------------------ccchhHHHHHHHhhcCCeEEEEeeCCEEEECCCHHHHHHHHHHH
Confidence 999998644 432211 1246689999999886 599999999999999999999999999
Q ss_pred Hhhhcc---cCCc-cccc----C-----CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECC----
Q psy17795 366 LQLYKT---RHPE-RLQC----S-----SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQ---- 428 (523)
Q Consensus 366 l~~~~~---~~~~-~~~~----~-----~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~---- 428 (523)
+..... ..+. .+.. . .++.+.+ +.|+++|.|+ ++.| .+++|+++|.|+++|.|.+++|+.
T Consensus 281 l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~-s~I~~~~~I~-~~~I-~~svI~~~~~Ig~~~~I~~sii~g~~~~ 357 (436)
T PLN02241 281 TKQPPKFSFYDPDAPIYTSPRFLPPSKIEDCRITD-SIISHGCFLR-ECKI-EHSVVGLRSRIGEGVEIEDTVMMGADYY 357 (436)
T ss_pred hcCCchhhccCCCCcccccCCCCCCcEecCCeEEE-eEEcCCcEEc-CeEE-EeeEEcCCCEECCCCEEEEeEEECCCcc
Confidence 864211 0000 0000 0 1233433 6788888888 8888 467888899998888888877644
Q ss_pred ------------C---CEECCCCEEeceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCC
Q psy17795 429 ------------G---ASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDG 493 (523)
Q Consensus 429 ------------~---~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~ 493 (523)
+ +.||++|.|.+++|+++|.||+++.|.+... ..++.++|++ +++..|+++||++
T Consensus 358 ~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~Ig~~~~i~~~~~----~~~~~~~~~~------~~~~~~~~~i~~~ 427 (436)
T PLN02241 358 ETEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARIGKNVVIINKDG----VQEADREEEG------YYIRSGIVVILKN 427 (436)
T ss_pred ccccccccccccCCcceEECCCCEEcceEecCCCEECCCcEEecccc----cCCccccccc------cEEeCCEEEEcCC
Confidence 2 3788888888888988999998888865311 1122333443 3333443566777
Q ss_pred CEECCCcE
Q psy17795 494 VTVPGELI 501 (523)
Q Consensus 494 ~~Ig~~~~ 501 (523)
+.|++|++
T Consensus 428 ~~~~~~~~ 435 (436)
T PLN02241 428 AVIPDGTV 435 (436)
T ss_pred cEeCCCCC
Confidence 77766664
No 7
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=6.6e-45 Score=382.25 Aligned_cols=331 Identities=21% Similarity=0.298 Sum_probs=255.7
Q ss_pred ccceeEEEEecCCCCCCcCCCCCCCCCcccceeCCc-chHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCe
Q psy17795 91 SCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGL-PMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKI 169 (523)
Q Consensus 91 ~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~-pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~ 169 (523)
|-+|+||||||| +||||+|||..+||||+||+|+ |||+|+|++|.++ |+++|+|+++|..+++.+|+...+...+.
T Consensus 3 ~~~~~avILAaG--~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~-Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~ 79 (407)
T PRK00844 3 MPKVLAIVLAGG--EGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNS-GYLRIYVLTQYKSHSLDRHISQTWRLSGL 79 (407)
T ss_pred CCceEEEEECCC--CCCccchhhcCCcccceeeCCcceEhHHHHHHHHHC-CCCEEEEEeccCHHHHHHHHHhCcCcccc
Confidence 446899999999 9999999999999999999999 9999999999996 99999999999999999999752110122
Q ss_pred eEEEEec---ccccchhhhhcccccccccCCCchhHHH--Hhhccc-CCcceEEEEc--cc--hHH--HHHHHHhcCCcc
Q psy17795 170 NIRYLQE---FWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHW-VQEAVYFTLE--IR--SDV--VILMHSLYSMAI 237 (523)
Q Consensus 170 ~i~~~~~---~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~-~~d~~~Lvl~--i~--~D~--l~~~h~~~~~~~ 237 (523)
.+.++.. .+..+ ..|..| ||+|++ ++++.+ ..++ |||++ .+ .|+ ++++|++.+ +
T Consensus 80 ~~~~~~~~~~~~~~~---------~~~~lG--ta~al~~a~~~i~~~~~~~-~lv~~gD~v~~~dl~~l~~~h~~~~--~ 145 (407)
T PRK00844 80 LGNYITPVPAQQRLG---------KRWYLG--SADAIYQSLNLIEDEDPDY-VVVFGADHVYRMDPRQMVDFHIESG--A 145 (407)
T ss_pred CCCeEEECCcccCCC---------CCcccC--CHHHHHHHHHHHHhcCCCE-EEEecCCEEEcCCHHHHHHHHHhcC--C
Confidence 2333321 11111 234445 999999 778763 2356 88888 44 345 889998887 8
Q ss_pred eEEEEEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCCcc-------cceeeeeEEEeeHHHH-HHHHHhhccccccccc
Q psy17795 238 LVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFV-------STLVNCGVYLFSLDIF-QNIAAVFQSKQDEFYN 309 (523)
Q Consensus 238 ~~tv~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~-------~~l~~~Giyif~~~il-~~l~~~~~~~~~e~~~ 309 (523)
++|+++.+++.+++..||.+..|++ ++|.+|.|||.... +.++++|+|+|++++| +.|.+......
T Consensus 146 ~~ti~~~~~~~~~~~~~Gvv~~d~~-g~v~~~~eKp~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~----- 219 (407)
T PRK00844 146 GVTVAAIRVPREEASAFGVIEVDPD-GRIRGFLEKPADPPGLPDDPDEALASMGNYVFTTDALVDALRRDAADED----- 219 (407)
T ss_pred cEEEEEEecchHHcccCCEEEECCC-CCEEEEEECCCCcccccCCCCCcEEEeEEEEEeHHHHHHHHHHhhcCCc-----
Confidence 8898887765456789999999986 89999999986432 5799999999999986 55654322111
Q ss_pred ccccccCCCCCcccccchhhhhhhhhcCCcEEEEEc------------chhHhhhccchhhhhccHHHHhhhccc-----
Q psy17795 310 GNYMVNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQT------------SKWWSQLKSAGSAIYANRHYLQLYKTR----- 372 (523)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~dil~~li~~g~v~~~~~------------~g~w~dIgt~~dyl~an~~~l~~~~~~----- 372 (523)
+..++.+|+++.+++++.+++|.+ .+||.|++++++|+++++.+|......
T Consensus 220 ------------~~~~~~~dii~~l~~~~~v~~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~~~~~~~~~~ 287 (407)
T PRK00844 220 ------------SSHDMGGDIIPRLVERGRAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVHPVFNLYNR 287 (407)
T ss_pred ------------ccccchhhHHHHHhccCeEEEEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhCCCCccccCCC
Confidence 223455799999999998999965 599999999999999999999642111
Q ss_pred -CCcccc--cC-CCc--------eEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEec
Q psy17795 373 -HPERLQ--CS-SQC--------KTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLN 440 (523)
Q Consensus 373 -~~~~~~--~~-~~~--------~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~ 440 (523)
.+.... .. +.. .+.++++|+++|.|+ ++.|. +++||++|.|+++|.|.+|+|+++|.|+++|+|.+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~I~-~~~i~-~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~ 365 (407)
T PRK00844 288 EWPIYTSSPNLPPAKFVDGGGRVGSAQDSLVSAGSIIS-GATVR-NSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRR 365 (407)
T ss_pred CCcccccCCCCCCceEecCCCccceEEeCEEcCCCEEC-CeeeE-cCEECCCCEECCCCEEeeeEECCCCEECCCCEEEe
Confidence 010000 00 111 244578889999998 88884 69999999999999999999999999999999999
Q ss_pred eEECCCCEECCCcEEcCC
Q psy17795 441 SIVGRNSKVGNWSRVEGT 458 (523)
Q Consensus 441 ~iIg~~~~Ig~~~~i~~~ 458 (523)
|+|++++.|++++++.+.
T Consensus 366 ~ii~~~~~i~~~~~i~~~ 383 (407)
T PRK00844 366 AILDKNVVVPPGATIGVD 383 (407)
T ss_pred eEECCCCEECCCCEECCC
Confidence 999999999999999763
No 8
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=100.00 E-value=6.6e-44 Score=368.52 Aligned_cols=310 Identities=23% Similarity=0.307 Sum_probs=239.3
Q ss_pred eEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccC-ChHHHHHHHHhhhhccCeeEEE
Q psy17795 95 TTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYY-PSADLQKFVLDMVQEYKINIRY 173 (523)
Q Consensus 95 ~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~-~~~~i~~~l~~~~~~~~~~i~~ 173 (523)
|||||||| +|+||+|+|..+||||+|++|+|||+|+|+++.+. ++++++|++++ ..+.+.+|+.+. ..|++++.+
T Consensus 1 kaiIlAaG--~gtRl~plt~~~pK~l~pv~g~pli~~~l~~l~~~-gi~~i~vv~~~~~~~~i~~~~~~~-~~~~~~~~~ 76 (353)
T TIGR01208 1 KALILAAG--KGTRLRPLTFTRPKQLIPVANKPILQYAIEDLAEA-GITDIGIVVGPVTGEEIKEIVGEG-ERFGAKITY 76 (353)
T ss_pred CEEEECCc--CcCccCccccCCCccccEECCEeHHHHHHHHHHHC-CCCEEEEEeCCCCHHHHHHHHhcc-cccCceEEE
Confidence 58999999 99999999999999999999999999999999996 99999999999 899999999863 457878878
Q ss_pred EecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--cc--hHH--HHHHHHhcCCcceEEEEEEe
Q psy17795 174 LQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--IR--SDV--VILMHSLYSMAILVTVMATE 245 (523)
Q Consensus 174 ~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i~--~D~--l~~~h~~~~~~~~~tv~~~~ 245 (523)
+.+.+++| |+++++ ++++. .++ |++++ .+ .|+ ++++|++.+ +++++++.+
T Consensus 77 ~~~~~~~G-----------------~~~al~~a~~~l~--~~~-~li~~gD~~~~~~l~~l~~~~~~~~--~d~ti~~~~ 134 (353)
T TIGR01208 77 IVQGEPLG-----------------LAHAVYTARDFLG--DDD-FVVYLGDNLIQDGISRFVKSFEEKD--YDALILLTK 134 (353)
T ss_pred EECCCCCC-----------------HHHHHHHHHHhcC--CCC-EEEEECCeecCccHHHHHHHHHhcC--CCcEEEEEE
Confidence 77766777 999999 77775 245 78777 32 444 788888877 888988887
Q ss_pred eCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCCCCccccc
Q psy17795 246 ATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQ 325 (523)
Q Consensus 246 ~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 325 (523)
.+ ++..||.+..|++ ++|.+|.|||....++++++|+|+|++.+++.|.+.....++||++
T Consensus 135 ~~--~~~~~g~~~~~~~-~~v~~~~ekp~~~~~~~~~~Giy~~~~~l~~~l~~~~~~~~~e~~l---------------- 195 (353)
T TIGR01208 135 VR--DPTAFGVAVLEDG-KRILKLVEKPKEPPSNLAVVGLYMFRPLIFEAIKNIKPSWRGELEI---------------- 195 (353)
T ss_pred CC--ChhhCeEEEEcCC-CcEEEEEECCCCCCccceEEEEEEECHHHHHHHHhcCCCCCCcEEH----------------
Confidence 64 4678998888754 7899999999877788999999999998888886543322345543
Q ss_pred chhhhhhhhhcCC-cEEEEEcchhHhhhccchhhhhccHHHHhhhcccCCcccccCCCceEecCcEECCCCEECCCCEEC
Q psy17795 326 LEKEIIMPLAGSG-KAYVYQTSKWWSQLKSAGSAIYANRHYLQLYKTRHPERLQCSSQCKTIGDVYIHSSASVHPTAIVG 404 (523)
Q Consensus 326 ~~~dil~~li~~g-~v~~~~~~g~w~dIgt~~dyl~an~~~l~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~ 404 (523)
+++++.+++.| ++++|.++++|.+++++++|+++++.++......... + .+.+.+.++++|++++.| +++.|+
T Consensus 196 --~d~l~~l~~~g~~v~~~~~~g~w~digt~~dl~~a~~~ll~~~~~~~~~-i--~~~~~i~~~~~i~~~~~i-~~~~i~ 269 (353)
T TIGR01208 196 --TDAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLILDEVEREVQG-V--DDESKIRGRVVVGEGAKI-VNSVIR 269 (353)
T ss_pred --HHHHHHHHHcCCeEEEEEeCcEEEeCCCHHHHHHHHHHHHhhcccccCC-c--CCCCEEcCCEEECCCCEE-eCCEEE
Confidence 68999999887 4999999999999999999999999999753211110 1 135667777888888777 566676
Q ss_pred CCcEECCCCEECCCCEE-eeeEECCCCEECCCCEEeceEECCCCEECCCc-EEcC
Q psy17795 405 PNVSIDDGAVIGPGVRI-KESIILQGASIGNHSLVLNSIVGRNSKVGNWS-RVEG 457 (523)
Q Consensus 405 ~~~~Ig~~~~I~~~~~I-~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~-~i~~ 457 (523)
++++||++|.|+ ++.| .+|+||++|.|+ +|.|.+|+|++++.|+.++ .+.+
T Consensus 270 ~~~~Ig~~~~I~-~~~i~~~~~Ig~~~~i~-~~~i~~s~i~~~~~i~~~~~~~~~ 322 (353)
T TIGR01208 270 GPAVIGEDCIIE-NSYIGPYTSIGEGVVIR-DAEVEHSIVLDESVIEGVQARIVD 322 (353)
T ss_pred CCcEECCCCEEc-CcEECCCCEECCCCEEe-eeEEEeeEEcCCCEEcCCcceeec
Confidence 667777777776 3333 345556666555 4555566666666666553 5443
No 9
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.9e-43 Score=351.55 Aligned_cols=372 Identities=22% Similarity=0.311 Sum_probs=284.3
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEE
Q psy17795 93 GWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIR 172 (523)
Q Consensus 93 ~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~ 172 (523)
.|.+|||||| +||||++ ..||.|.+++||||++|.++....+ +.+++++|.++..+.+++.+.+. . ++.
T Consensus 2 ~~~~vILAAG--kGTRMkS---~lPKVLH~vaGkpMl~hVi~~a~~l-~~~~i~vVvGh~ae~V~~~~~~~----~-~v~ 70 (460)
T COG1207 2 SLSAVILAAG--KGTRMKS---DLPKVLHPVAGKPMLEHVIDAARAL-GPDDIVVVVGHGAEQVREALAER----D-DVE 70 (460)
T ss_pred CceEEEEecC--CCccccC---CCcccchhccCccHHHHHHHHHhhc-CcceEEEEEcCCHHHHHHHhccc----c-Cce
Confidence 4569999999 9999999 9999999999999999999999987 99999999999999999999862 1 578
Q ss_pred EEecccccchhhhhcccccccccCCCchhHHH--Hhhcc-cCCcceEEEEc-----cchHH---HHHHHHhcCCcceEEE
Q psy17795 173 YLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLH-WVQEAVYFTLE-----IRSDV---VILMHSLYSMAILVTV 241 (523)
Q Consensus 173 ~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~-~~~d~~~Lvl~-----i~~D~---l~~~h~~~~~~~~~tv 241 (523)
|+.|.+++| |++|++ ++++. +.+.+ +||++ +-.+. +++.|...+ +.+++
T Consensus 71 ~v~Q~eqlG-----------------TgHAV~~a~~~l~~~~~g~-vLVl~GD~PLit~~TL~~L~~~~~~~~--~~~tv 130 (460)
T COG1207 71 FVLQEEQLG-----------------TGHAVLQALPALADDYDGD-VLVLYGDVPLITAETLEELLAAHPAHG--AAATV 130 (460)
T ss_pred EEEecccCC-----------------hHHHHHhhhhhhhcCCCCc-EEEEeCCcccCCHHHHHHHHHhhhhcC--CceEE
Confidence 899999999 999999 88884 44456 89988 22344 777888777 88999
Q ss_pred EEEeeCCCCCcceeEEEEcCCCCcEEEEeecCC----CcccceeeeeEEEeeHH-HHHHHHHhhccc-cccccccccccc
Q psy17795 242 MATEATRQQSVYYGCIVRKQQTSEISHYVEKPS----TFVSTLVNCGVYLFSLD-IFQNIAAVFQSK-QDEFYNGNYMVN 315 (523)
Q Consensus 242 ~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~----~~~~~l~~~Giyif~~~-il~~l~~~~~~~-~~e~~~~~~~~~ 315 (523)
++...+ +|..||.+..+++ |+|..|.|..+ +..-..+|+|+|+|+.. ++++|.++-..+ ++|||+
T Consensus 131 Lt~~~~--dP~GYGRIvr~~~-g~V~~IVE~KDA~~eek~I~eiNtGiy~f~~~~L~~~L~~l~nnNaqgEYYL------ 201 (460)
T COG1207 131 LTAELD--DPTGYGRIVRDGN-GEVTAIVEEKDASEEEKQIKEINTGIYAFDGAALLRALPKLSNNNAQGEYYL------ 201 (460)
T ss_pred EEEEcC--CCCCcceEEEcCC-CcEEEEEEcCCCCHHHhcCcEEeeeEEEEcHHHHHHHHHHhccccccCcEeH------
Confidence 998874 7899999999987 89999999743 33567899999999977 566676655555 899998
Q ss_pred CCCCCcccccchhhhhhhhhcCCc-EEEEEcchhHh--hhccchhhhhccHHHHhh---------hcccCCcccccCCCc
Q psy17795 316 GKDTDFNHIQLEKEIIMPLAGSGK-AYVYQTSKWWS--QLKSAGSAIYANRHYLQL---------YKTRHPERLQCSSQC 383 (523)
Q Consensus 316 ~~~~~~~~~~~~~dil~~li~~g~-v~~~~~~g~w~--dIgt~~dyl~an~~~l~~---------~~~~~~~~~~~~~~~ 383 (523)
+|++..+...|. +.++..++++. -+++-..+-++.+.|.++ .....| .+.
T Consensus 202 ------------TDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r~~~~~m~~GVtl~dP------~t~ 263 (460)
T COG1207 202 ------------TDVIAIARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRRIAEKLMLAGVTLIDP------ATT 263 (460)
T ss_pred ------------HHHHHHHHhCCCeEEEEecCchHHhcCcCcHHHHHHHHHHHHHHHHHHHHHcCcEEeCC------CeE
Confidence 799998887775 88888776654 344444555555544433 222333 356
Q ss_pred eEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCC----
Q psy17795 384 KTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTP---- 459 (523)
Q Consensus 384 ~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~---- 459 (523)
.|.+.+.|++++.|.|++.|.+++.||++|+||++|+|.+|.|++++.|..+|+|++|.||++|.||+.+.+.+..
T Consensus 264 ~i~~dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~ 343 (460)
T COG1207 264 YIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGA 343 (460)
T ss_pred EEcCcEEECCceEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCcCcccC
Confidence 7888888999999999998888899999999999988888888888888888888888888888888877774422
Q ss_pred --------------CCCCCCCCce------ecCCCCeecCCCee------cCCcEEeCCCCEECCCcEE-------eCeE
Q psy17795 460 --------------CDPNPNKAFA------KMDNPPLFNSNGKL------NPSITILGDGVTVPGELIV-------LNSI 506 (523)
Q Consensus 460 --------------~~~~~~~~~v------~I~~~~~ig~~~~i------~~g~~iIG~~~~Ig~~~~i-------~~~~ 506 (523)
++....-+|. .||.++-||++..- ..-.|+||++++||.++.+ .++.
T Consensus 344 ~~hIGNFVEvK~a~ig~gsKa~HLtYlGDA~iG~~~NiGAGtItcNYDG~nK~~T~IGd~vFiGSns~LVAPV~IGd~a~ 423 (460)
T COG1207 344 DVHIGNFVEVKKATIGKGSKAGHLTYLGDAEIGENVNIGAGTITCNYDGKNKFKTIIGDNVFIGSNSQLVAPVTIGDGAT 423 (460)
T ss_pred CCeEeeeEEEecccccCCccccceeeeccceecCCceeccceEEEcCCCcccceeeecCCcEEccCCcEEeeEEecCCcE
Confidence 1111111121 23333334433311 1124788999999999866 4678
Q ss_pred EcCCcEeCCCCCCccc
Q psy17795 507 VLPYKELTRSFKNEIL 522 (523)
Q Consensus 507 v~~~~~i~~~~~~~~i 522 (523)
|+.+++|+++||...+
T Consensus 424 iaAGStIT~DVp~~aL 439 (460)
T COG1207 424 IAAGSTITKDVPEGAL 439 (460)
T ss_pred EcccceEcccCCCCce
Confidence 8899999999996654
No 10
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=7.3e-44 Score=376.20 Aligned_cols=327 Identities=18% Similarity=0.291 Sum_probs=247.0
Q ss_pred ccceeEEEEecCCCCCCcCCCCCCCCCcccceeCCc-chHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhh--cc
Q psy17795 91 SCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGL-PMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQ--EY 167 (523)
Q Consensus 91 ~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~-pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~--~~ 167 (523)
|..++||||||| +||||+|||..+||||+||+|+ |||+|+|++|.++ |+++|+|++++..+++++|+.+... .+
T Consensus 1 m~~~~AVILAaG--~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~-Gi~~vivv~~~~~~~i~~~l~~~~~~~~~ 77 (429)
T PRK02862 1 MKRVLAIILGGG--AGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINS-GINKIYVLTQFNSASLNRHISQTYNFDGF 77 (429)
T ss_pred CCcEEEEEECCC--CCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHC-CCCEEEEEecCCHHHHHHHHhcCcCcccc
Confidence 345789999999 9999999999999999999999 9999999999996 9999999999999999999975210 00
Q ss_pred Cee-EEEEecccccchhhhhcccccccccCCCchhHHH--Hhhcc-cCCcceEEEEc--cc--hHH--HHHHHHhcCCcc
Q psy17795 168 KIN-IRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLH-WVQEAVYFTLE--IR--SDV--VILMHSLYSMAI 237 (523)
Q Consensus 168 ~~~-i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~-~~~d~~~Lvl~--i~--~D~--l~~~h~~~~~~~ 237 (523)
... +.+....+.. ....|+.| ||+|++ ++++. ..+++ |||++ .+ .|+ ++++|++.+ +
T Consensus 78 ~~g~~~i~~~~~~~--------~~~~~~lG--Ta~al~~a~~~l~~~~~~~-~lVl~gD~l~~~dl~~ll~~h~~~~--a 144 (429)
T PRK02862 78 SGGFVEVLAAQQTP--------ENPSWFQG--TADAVRKYLWHFQEWDVDE-YLILSGDQLYRMDYRLFVQHHRETG--A 144 (429)
T ss_pred CCCEEEEeCCcccC--------CCCccccC--cHHHHHHHHHHHHhcCCCE-EEEecCCEEEeCCHHHHHHHHHHcC--C
Confidence 001 2122111100 01234455 999999 77775 22467 99988 33 455 888998887 8
Q ss_pred eEEEEEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCCc---------------------ccceeeeeEEEeeHHHHHHH
Q psy17795 238 LVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTF---------------------VSTLVNCGVYLFSLDIFQNI 296 (523)
Q Consensus 238 ~~tv~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~---------------------~~~l~~~Giyif~~~il~~l 296 (523)
++|+++.+.+.+++..||.+..|++ ++|.+|.|||... ..+++++|+|+|++++|..+
T Consensus 145 ~~tl~~~~~~~~~~~~yG~i~~d~~-g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~ 223 (429)
T PRK02862 145 DITLAVLPVDEKDASGFGLMKTDDD-GRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDL 223 (429)
T ss_pred CEEEEEEecChhhcccceEEEECCC-CcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHH
Confidence 8899888765556789999999876 8999999998632 23589999999999998644
Q ss_pred -HHhhcccccccccccccccCCCCCcccccchhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhccHHHHhhhcc---c
Q psy17795 297 -AAVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQLYKT---R 372 (523)
Q Consensus 297 -~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~an~~~l~~~~~---~ 372 (523)
.+.. +..++..++++.+++.+++++|..++||.|++++++|+++++.++..... .
T Consensus 224 l~~~~---------------------~~~~~~~dil~~l~~~~~v~~~~~~g~w~digt~~~y~~an~~l~~~~~~~~~~ 282 (429)
T PRK02862 224 LNKNP---------------------EYTDFGKEIIPEAIRDYKVQSYLFDGYWEDIGTIEAFYEANLALTQQPNPPFSF 282 (429)
T ss_pred HHHCC---------------------ChhhhHHHHHHHHhccCcEEEEEeCCEEEeCCCHHHHHHHHHHHHcCCCCcccc
Confidence 3311 12356679999998888899999999999999999999999998832110 0
Q ss_pred -CCcc-cc----cCC-----CceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECC-------------
Q psy17795 373 -HPER-LQ----CSS-----QCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQ------------- 428 (523)
Q Consensus 373 -~~~~-~~----~~~-----~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~------------- 428 (523)
.+.. +. ..+ .+.+. ++.|+++|.| +++.| .+++||++|.|+++|.|.+|+|+.
T Consensus 283 ~~~~~~i~~~~~~~~~a~~~~~~~~-~~~ig~~~~i-~~~~i-~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~ 359 (429)
T PRK02862 283 YDEKAPIYTRARYLPPSKLLDATIT-ESIIAEGCII-KNCSI-HHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREEL 359 (429)
T ss_pred cCCCCceeccCCCCCCccccccEEE-eCEECCCCEE-CCcEE-EEEEEeCCcEECCCCEEEeeEEecCcccccccccccc
Confidence 0000 00 001 23333 4788888888 77888 468999999999999998888865
Q ss_pred ------CCEECCCCEEeceEECCCCEECCCcEEcCC
Q psy17795 429 ------GASIGNHSLVLNSIVGRNSKVGNWSRVEGT 458 (523)
Q Consensus 429 ------~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~ 458 (523)
++.||++|.|.+++|+++|.||++|+|.+.
T Consensus 360 ~~~~~~~~~Ig~~~~i~~~ii~~~~~i~~~~~~~~~ 395 (429)
T PRK02862 360 RKEGKPPLGIGEGTTIKRAIIDKNARIGNNVRIVNK 395 (429)
T ss_pred cccCCcccEECCCCEEEEEEECCCcEECCCcEEecC
Confidence 688999999999999999999999998654
No 11
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.5e-42 Score=370.50 Aligned_cols=378 Identities=17% Similarity=0.215 Sum_probs=282.1
Q ss_pred ccceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCee
Q psy17795 91 SCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKIN 170 (523)
Q Consensus 91 ~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~ 170 (523)
|.+++||||||| .|+||++ ..||||+|++|+|||+|+|+++.++ +++++++++++..+++.+++.+. ..
T Consensus 1 m~~~~avIlAaG--~g~Rl~~---~~pK~l~pi~g~pli~~~l~~l~~~-gi~~iiiv~~~~~~~i~~~~~~~-----~~ 69 (459)
T PRK14355 1 MNNLAAIILAAG--KGTRMKS---DLVKVMHPLAGRPMVSWPVAAAREA-GAGRIVLVVGHQAEKVREHFAGD-----GD 69 (459)
T ss_pred CCcceEEEEcCC--CCcccCC---CCCceeceeCCccHHHHHHHHHHhc-CCCeEEEEECCCHHHHHHHhccC-----Cc
Confidence 345789999999 9999986 8899999999999999999999986 99999999999888999998752 14
Q ss_pred EEEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--c--c--hHH--HHHHHHhcCCcceEE
Q psy17795 171 IRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--I--R--SDV--VILMHSLYSMAILVT 240 (523)
Q Consensus 171 i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i--~--~D~--l~~~h~~~~~~~~~t 240 (523)
+.++.+.+++| ++++++ ++++....++ ||+++ . + .++ +++.|+..+ ++++
T Consensus 70 i~~~~~~~~~G-----------------t~~al~~a~~~l~~~~~~-vlv~~gD~p~~~~~~i~~l~~~~~~~~--~~~~ 129 (459)
T PRK14355 70 VSFALQEEQLG-----------------TGHAVACAAPALDGFSGT-VLILCGDVPLLRAETLQGMLAAHRATG--AAVT 129 (459)
T ss_pred eEEEecCCCCC-----------------HHHHHHHHHHHhhccCCc-EEEEECCccCcCHHHHHHHHHHHHhcC--CcEE
Confidence 66666777777 999999 7777532456 88887 2 2 244 778887766 7788
Q ss_pred EEEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCC----cccceeeeeEEEeeHHH-HHHHHHhhccc-ccccccccccc
Q psy17795 241 VMATEATRQQSVYYGCIVRKQQTSEISHYVEKPST----FVSTLVNCGVYLFSLDI-FQNIAAVFQSK-QDEFYNGNYMV 314 (523)
Q Consensus 241 v~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~----~~~~l~~~Giyif~~~i-l~~l~~~~~~~-~~e~~~~~~~~ 314 (523)
++..+.. ++..||.+..|++ ++|.++.|||.. ..++++++|+|+|++++ ++.+....... .+|+++
T Consensus 130 v~~~~~~--~~~~~g~v~~d~~-g~v~~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~e~~~----- 201 (459)
T PRK14355 130 VLTARLE--NPFGYGRIVRDAD-GRVLRIVEEKDATPEERSIREVNSGIYCVEAAFLFDAIGRLGNDNAQGEYYL----- 201 (459)
T ss_pred EEEEEcC--CCCcCCEEEEcCC-CCEEEEEEcCCCChhHhhccEEEEEEEEEeHHHHHHHHHHcCccccCCceeH-----
Confidence 8777653 4578999888876 899999988632 13478999999999986 45565433221 233433
Q ss_pred cCCCCCcccccchhhhhhhhhcCCc-EEEEEcchh--HhhhccchhhhhccHHHHhhhcc-c--CCcccccCCC-ceEec
Q psy17795 315 NGKDTDFNHIQLEKEIIMPLAGSGK-AYVYQTSKW--WSQLKSAGSAIYANRHYLQLYKT-R--HPERLQCSSQ-CKTIG 387 (523)
Q Consensus 315 ~~~~~~~~~~~~~~dil~~li~~g~-v~~~~~~g~--w~dIgt~~dyl~an~~~l~~~~~-~--~~~~~~~~~~-~~i~~ 387 (523)
+|+++.++++|. +.+|.++++ |.+++++++|+++++.++..... . ...... .+. ..|++
T Consensus 202 -------------~d~i~~l~~~g~~v~~~~~~~~~~~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~~i-~~~~~~i~~ 267 (459)
T PRK14355 202 -------------TDIVAMAAAEGLRCLAFPVADPDEIMGVNDRAQLAEAARVLRRRINRELMLAGVTLI-DPETTYIDR 267 (459)
T ss_pred -------------HHHHHHHHHCCCeEEEEEcCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEE-CCCceEECC
Confidence 799999998885 999999887 88999999999998766543211 1 011111 133 46889
Q ss_pred CcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCC-------C
Q psy17795 388 DVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTP-------C 460 (523)
Q Consensus 388 ~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~-------~ 460 (523)
++.|++++.|++++.|+++++||++|.|+++|+|.+|+||++|.|+++|+|.+++|++++.||+++.+.... +
T Consensus 268 ~v~ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i 347 (459)
T PRK14355 268 GVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKI 347 (459)
T ss_pred CeEEcCCCEEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCCCEE
Confidence 999999999999999999999999999999999999999999999999999999999888888776664311 1
Q ss_pred CCCCC-----------------CCceecCCCCeecCCCeec------CCcEEeCCCCEECCCcEE-------eCeEEcCC
Q psy17795 461 DPNPN-----------------KAFAKMDNPPLFNSNGKLN------PSITILGDGVTVPGELIV-------LNSIVLPY 510 (523)
Q Consensus 461 ~~~~~-----------------~~~v~I~~~~~ig~~~~i~------~g~~iIG~~~~Ig~~~~i-------~~~~v~~~ 510 (523)
+.+.. -+.+.|++++.||+++.+. .+.++||++|.||.+++| .+++|+++
T Consensus 348 g~~~~~~~~~ig~~~~~~~~~~ig~~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~a~ 427 (459)
T PRK14355 348 GNFVETKKIVMGEGSKASHLTYLGDATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAPVTVGRNSLIAAG 427 (459)
T ss_pred CCCccccCCEECCCceeeeeccccCCEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCEEeCCcEECCCCEECCC
Confidence 11110 1234566777777665331 112566777777777655 45677777
Q ss_pred cEeCCCCCCcc
Q psy17795 511 KELTRSFKNEI 521 (523)
Q Consensus 511 ~~i~~~~~~~~ 521 (523)
+.|..++|+..
T Consensus 428 s~v~~~v~~~~ 438 (459)
T PRK14355 428 TTVTKDVPPDS 438 (459)
T ss_pred CEEcccCCCCc
Confidence 77777877544
No 12
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2.8e-42 Score=369.23 Aligned_cols=376 Identities=18% Similarity=0.247 Sum_probs=267.6
Q ss_pred cceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeE
Q psy17795 92 CGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINI 171 (523)
Q Consensus 92 ~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i 171 (523)
|.|+||||||| +|+||++ ..||+|+|++|+|||+|+|++|.+. ++++|+|++++..+.+++++.. . ++
T Consensus 6 ~~~~avILAaG--~gtRl~~---~~pK~llpi~gkpli~~~l~~l~~~-gi~~ivvv~~~~~~~i~~~~~~----~--~i 73 (481)
T PRK14358 6 RPLDVVILAAG--QGTRMKS---ALPKVLHPVAGRPMVAWAVKAARDL-GARKIVVVTGHGAEQVEAALQG----S--GV 73 (481)
T ss_pred CCceEEEECCC--CCCcCCC---CCCceecEECCeeHHHHHHHHHHhC-CCCeEEEEeCCCHHHHHHHhcc----C--Cc
Confidence 46889999999 9999998 6899999999999999999999986 9999999999988889888864 2 36
Q ss_pred EEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc----cch--HH--HHHHHHhcCCcceEEE
Q psy17795 172 RYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE----IRS--DV--VILMHSLYSMAILVTV 241 (523)
Q Consensus 172 ~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~----i~~--D~--l~~~h~~~~~~~~~tv 241 (523)
.++.+++++| |+++++ .+++....++ |++++ ++. ++ ++++|++.+ +.+|+
T Consensus 74 ~~v~~~~~~G-----------------t~~al~~~~~~l~~~~~~-~lV~~gD~P~i~~~~l~~ll~~~~~~~--~~~ti 133 (481)
T PRK14358 74 AFARQEQQLG-----------------TGDAFLSGASALTEGDAD-ILVLYGDTPLLRPDTLRALVADHRAQG--SAMTI 133 (481)
T ss_pred EEecCCCcCC-----------------cHHHHHHHHHHhhCCCCc-EEEEeCCeeccCHHHHHHHHHHHHhcC--CeEEE
Confidence 6777766777 999998 6676522356 78877 232 33 778888777 88888
Q ss_pred EEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCCc----ccceeeeeEEEeeHHHHHHHHHhhcc-cccccccccccccC
Q psy17795 242 MATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTF----VSTLVNCGVYLFSLDIFQNIAAVFQS-KQDEFYNGNYMVNG 316 (523)
Q Consensus 242 ~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~----~~~l~~~Giyif~~~il~~l~~~~~~-~~~e~~~~~~~~~~ 316 (523)
++.+++ ++.+||.+..|++ ++|.+|.|||... ..+++++|+|+|++++++.++..... ..+||+
T Consensus 134 ~~~~~~--~~~~yG~v~~d~~-g~v~~~~Ek~~~~~~~~~~~~~n~Giyi~~~~~~~~~~~i~~~~~~ge~~-------- 202 (481)
T PRK14358 134 LTGELP--DATGYGRIVRGAD-GAVERIVEQKDATDAEKAIGEFNSGVYVFDARAPELARRIGNDNKAGEYY-------- 202 (481)
T ss_pred EEEEcC--CCCCceEEEECCC-CCEEEEEECCCCChhHhhCCeEEEEEEEEchHHHHHHHhcCCCccCCeEE--------
Confidence 887775 4567999999877 8999999998643 24578999999998776655543221 123443
Q ss_pred CCCCcccccchhhhhhhhhcCCc-EEEEEcchhHhhhccchhhhhccHH-HHhh-hc-cc-CC-cccccCCCceEecCcE
Q psy17795 317 KDTDFNHIQLEKEIIMPLAGSGK-AYVYQTSKWWSQLKSAGSAIYANRH-YLQL-YK-TR-HP-ERLQCSSQCKTIGDVY 390 (523)
Q Consensus 317 ~~~~~~~~~~~~dil~~li~~g~-v~~~~~~g~w~dIgt~~dyl~an~~-~l~~-~~-~~-~~-~~~~~~~~~~i~~~~~ 390 (523)
+ +|+++.+++++. +++|...++|..++...+++.++.. +++. .. .. .. ......+...+.+++.
T Consensus 203 ---------l-~d~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 272 (481)
T PRK14358 203 ---------L-TDLLGLYRAGGAQVRAFKLSDPDEVLGANDRAGLAQLEATLRRRINEAHMKAGVTLQDPGTILIEDTVT 272 (481)
T ss_pred ---------H-HHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeeeccCCcE
Confidence 3 699999998885 9999999999888887777555543 3322 10 00 00 0011112234567778
Q ss_pred ECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEc--------------
Q psy17795 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVE-------------- 456 (523)
Q Consensus 391 i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~-------------- 456 (523)
||+++.|++++.|.+++.||++|.|+++|.|++|+||++|.|+++++|.+++||+++.||+++.+.
T Consensus 273 Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~ 352 (481)
T PRK14358 273 LGRDVTIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNF 352 (481)
T ss_pred ECCCCEEeCCcEEeCCcEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCC
Confidence 888888888888877888888888888888877778877777777777666666666666655553
Q ss_pred ----CCCCCCCCC------CCceecCCCCeecCCCeecC------CcEEeCCCCEECCCcEE-------eCeEEcCCcEe
Q psy17795 457 ----GTPCDPNPN------KAFAKMDNPPLFNSNGKLNP------SITILGDGVTVPGELIV-------LNSIVLPYKEL 513 (523)
Q Consensus 457 ----~~~~~~~~~------~~~v~I~~~~~ig~~~~i~~------g~~iIG~~~~Ig~~~~i-------~~~~v~~~~~i 513 (523)
++.+..... -+.+.||++|.||.++++.. ..++||++|.||+++++ .+++|++++.|
T Consensus 353 ~~i~~~~i~~~~~ig~~~~~~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~i~~gs~v 432 (481)
T PRK14358 353 VETKNARLDAGVKAGHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTLIAPRVVGDAAFIAAGSAV 432 (481)
T ss_pred EEECCceecCCcccCceEEECCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCCEEcCCcEECCCCEECCCCEE
Confidence 211111111 13467788888887776643 23677888888888766 34556666667
Q ss_pred CCCCCCc
Q psy17795 514 TRSFKNE 520 (523)
Q Consensus 514 ~~~~~~~ 520 (523)
.+++|..
T Consensus 433 ~~~v~~~ 439 (481)
T PRK14358 433 HDDVPEG 439 (481)
T ss_pred ecccCCC
Confidence 7777643
No 13
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=7.3e-43 Score=368.19 Aligned_cols=333 Identities=16% Similarity=0.245 Sum_probs=252.8
Q ss_pred cccceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcc-hHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhc--
Q psy17795 90 VSCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLP-MIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQE-- 166 (523)
Q Consensus 90 ~~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~p-li~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~-- 166 (523)
+|++++||||||| +||||+|||..+||||+|++|+| ||+|+|++|.++ |+++|+|++++..+.+.+|+.+.+..
T Consensus 12 ~~~~~~aVILAaG--~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~-Gi~~i~vv~~~~~~~i~~~~~~~~~~~~ 88 (425)
T PRK00725 12 LTRDTLALILAGG--RGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINS-GIRRIGVLTQYKAHSLIRHIQRGWSFFR 88 (425)
T ss_pred hhcceEEEEECCC--CCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHC-CCCeEEEEecCCHHHHHHHHHhhhcccc
Confidence 3456889999999 99999999999999999999996 999999999996 99999999999999999999762110
Q ss_pred --cCeeEEEEecccccchhhhhcccccccccCCCchhHHH--Hhhcc-cCCcceEEEEc--cc--hHH--HHHHHHhcCC
Q psy17795 167 --YKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLH-WVQEAVYFTLE--IR--SDV--VILMHSLYSM 235 (523)
Q Consensus 167 --~~~~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~-~~~d~~~Lvl~--i~--~D~--l~~~h~~~~~ 235 (523)
.+..+.+..+.... ..++|..| ||+|++ ++++. ..+++ |||++ .+ .|+ ++++|++++
T Consensus 89 ~~~~~~i~i~~~~~~~--------~~e~~~lG--Ta~al~~a~~~l~~~~~d~-~lVl~gD~l~~~dl~~ll~~h~~~~- 156 (425)
T PRK00725 89 EELGEFVDLLPAQQRV--------DEENWYRG--TADAVYQNLDIIRRYDPKY-VVILAGDHIYKMDYSRMLADHVESG- 156 (425)
T ss_pred cCCCCeEEEeCCcccC--------CCCccccC--cHHHHHHHHHHHHhcCCCE-EEEecCCeEeccCHHHHHHHHHHcC-
Confidence 01122222211110 01234445 999999 77776 22467 99988 33 445 889998887
Q ss_pred cceEEEEEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCCc-------ccceeeeeEEEeeHHHH-HHHHHhhccccccc
Q psy17795 236 AILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTF-------VSTLVNCGVYLFSLDIF-QNIAAVFQSKQDEF 307 (523)
Q Consensus 236 ~~~~tv~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~-------~~~l~~~Giyif~~~il-~~l~~~~~~~~~e~ 307 (523)
+++|+++.+.+.+++..||++..|++ ++|.+|.|||..+ .+.++++|+|+|++++| +.|.+.....
T Consensus 157 -~~~tl~~~~~~~~~~~~yG~v~~d~~-~~V~~~~EKp~~~~~~~~~~~~~l~n~GIYi~~~~~L~~~L~~~~~~~---- 230 (425)
T PRK00725 157 -ADCTVACLEVPREEASAFGVMAVDEN-DRITAFVEKPANPPAMPGDPDKSLASMGIYVFNADYLYELLEEDAEDP---- 230 (425)
T ss_pred -CCEEEEEEecchhhcccceEEEECCC-CCEEEEEECCCCccccccCccceEEEeeEEEEeHHHHHHHHHHhhcCC----
Confidence 88899887765556789999999986 8999999998643 25799999999999976 4564422111
Q ss_pred ccccccccCCCCCcccccchhhhhhhhhcCCcEEEEEcc-----------hhHhhhccchhhhhccHHHHhhhccc----
Q psy17795 308 YNGNYMVNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTS-----------KWWSQLKSAGSAIYANRHYLQLYKTR---- 372 (523)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~dil~~li~~g~v~~~~~~-----------g~w~dIgt~~dyl~an~~~l~~~~~~---- 372 (523)
....+|.+|+++.+++++++++|.+. +||.|++++++|+++++.++......
T Consensus 231 -------------~~~~~~~~dii~~l~~~~~v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~~~~~~~~ 297 (425)
T PRK00725 231 -------------NSSHDFGKDIIPKIVEEGKVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVTPELDLYD 297 (425)
T ss_pred -------------CccchhhHHHHHHHhccCcEEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcCCCchhhccC
Confidence 01234568999999999999999885 69999999999999999998532110
Q ss_pred --CCcccc--cCCCc----------eEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEE
Q psy17795 373 --HPERLQ--CSSQC----------KTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLV 438 (523)
Q Consensus 373 --~~~~~~--~~~~~----------~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I 438 (523)
.+.... ..+.+ .+..+++|+++|.| +++.|. +++|+++|.|+++|.|.+|+|+++|.||++|.|
T Consensus 298 ~~~~i~t~~~~~~~~~~~~~~~~~~~~~~~s~i~~~~~i-~~~~i~-~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i 375 (425)
T PRK00725 298 RNWPIWTYQEQLPPAKFVFDRSGRRGMAINSLVSGGCII-SGAVVR-RSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRL 375 (425)
T ss_pred CCCccccCCCCCCCCeEeccCCCCcceEEeCEEcCCcEE-cCcccc-CCEECCCCEECCCCEEeeeEEcCCCEECCCCEE
Confidence 000000 00111 12346788888888 678884 799999999999999999999999999999999
Q ss_pred eceEECCCCEECCCcEEcCC
Q psy17795 439 LNSIVGRNSKVGNWSRVEGT 458 (523)
Q Consensus 439 ~~~iIg~~~~Ig~~~~i~~~ 458 (523)
.+|+|+++|.|+++++|++.
T Consensus 376 ~~~ii~~~~~i~~~~~i~~~ 395 (425)
T PRK00725 376 RRCVIDRGCVIPEGMVIGED 395 (425)
T ss_pred eeEEECCCCEECCCCEECCC
Confidence 99999999999999999754
No 14
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=100.00 E-value=2.5e-43 Score=366.41 Aligned_cols=339 Identities=15% Similarity=0.180 Sum_probs=250.6
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCcccceeCCc-chHHHHHHHHhcCCCccEEEEEccCChH-HHHHHHHhhhhccCee
Q psy17795 93 GWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGL-PMIQHHIEACVQVPNLKEIIILGYYPSA-DLQKFVLDMVQEYKIN 170 (523)
Q Consensus 93 ~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~-pli~~~l~~~~~~~g~~~i~vv~~~~~~-~i~~~l~~~~~~~~~~ 170 (523)
+|+|||||+| +|+||+|||..+||||+||+|| |||+|+|++|.+. |+++|+|+++|+.+ ++++||.+. ..|+++
T Consensus 2 ~~~avila~g--~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~-Gi~~I~iv~~~~~~~~I~~~l~~~-~~~~~~ 77 (369)
T TIGR02092 2 KMSAIINLTE--SSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNA-GIRNVFIFFKNKERQSLFDHLGSG-REWDLH 77 (369)
T ss_pred cEEEEEECCC--CCccccccccCCcccccccCCeeeEEEEEhhhhhcc-CCCEEEEEeCCCcHHHHHHHHhCC-CCCCcc
Confidence 5789999999 9999999999999999999999 9999999999996 99999999999776 999999863 456655
Q ss_pred E-------EEEecccccchhhhhcccccccccCCCchhHHH--Hhhcc-cCCcceEEEEc--cc--hHH--HHHHHHhcC
Q psy17795 171 I-------RYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLH-WVQEAVYFTLE--IR--SDV--VILMHSLYS 234 (523)
Q Consensus 171 i-------~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~-~~~d~~~Lvl~--i~--~D~--l~~~h~~~~ 234 (523)
+ .+..+..++| .| ++++++ ++++. ..+++ |||++ ++ .|+ ++++|++.+
T Consensus 78 ~~~~~~~~~~~~e~~~l~-------------tg--~~~a~~~a~~~l~~~~~~~-~lvlnGD~l~~~dl~~ll~~h~~~~ 141 (369)
T TIGR02092 78 RKRDGLFVFPYNDRDDLS-------------EG--GKRYFSQNLEFLKRSTSEY-TVVLNSHMVCNIDLKAVLKYHEETG 141 (369)
T ss_pred cccCcEEEEeccCCCCcc-------------cC--hHHHHHHHHHHHHhCCCCE-EEEECCCEEEecCHHHHHHHHHHcC
Confidence 3 2223333333 22 666676 66774 22367 99998 44 455 888998888
Q ss_pred CcceEEEEEEeeCCCCCcceeE-EEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHH-HHHHHhhcccccccccccc
Q psy17795 235 MAILVTVMATEATRQQSVYYGC-IVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIF-QNIAAVFQSKQDEFYNGNY 312 (523)
Q Consensus 235 ~~~~~tv~~~~~~~~~~~~~g~-v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il-~~l~~~~~~~~~e~~~~~~ 312 (523)
+++|+++.+++..++..||. +..|++ ++|..+.+++.......+++|+|+|+++++ +.+.+.....
T Consensus 142 --a~~tl~~~~v~~~~~~~~g~vv~~~~~-g~v~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~--------- 209 (369)
T TIGR02092 142 --KDITVVYKKVKPADASEYDTILRFDES-GKVKSIGQNLNPEEEENISLDIYIVSTDLLIELLYECIQRG--------- 209 (369)
T ss_pred --CCEEEEEEecCHHHccccCcEEEEcCC-CCEEeccccCCCCCcceeeeeEEEEEHHHHHHHHHHHhhcC---------
Confidence 88999998875445677854 456665 788877544332234578999999999866 4444432111
Q ss_pred cccCCCCCcccccchhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhccHHHHhhhcccCCcccccCCCceEecCcEEC
Q psy17795 313 MVNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQLYKTRHPERLQCSSQCKTIGDVYIH 392 (523)
Q Consensus 313 ~~~~~~~~~~~~~~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~an~~~l~~~~~~~~~~~~~~~~~~i~~~~~i~ 392 (523)
..++..++++.+++.+.++++..++||.|++++++|++++..+|+........... ...+.....+.
T Consensus 210 ----------~~~~~~d~i~~~~~~~~v~~~~~~g~w~dIgt~~~l~~a~~~~l~~~~~~~~~~~~---~~~~~~~~~~~ 276 (369)
T TIGR02092 210 ----------KLTSLEELIRENLKELNINAYEYTGYLANINSVKSYYKANMDLLDPQNFQSLFYSS---QGPIYTKVKDE 276 (369)
T ss_pred ----------ccccHHHHHHHHhccCcEEEEecCCceeEcCCHHHHHHHHHHHhCCcchhhhcCCC---CCceeeccCCC
Confidence 11122588998887778999999999999999999999999998764311100000 11111112233
Q ss_pred CCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCCCCCCCceecC
Q psy17795 393 SSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMD 472 (523)
Q Consensus 393 ~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~ 472 (523)
+.+.|++++.| ++++||++|.|+ +.|.+|+||++|.|+++|.|.+|+|++++.|++++.+.+
T Consensus 277 ~p~~i~~~~~i-~~~~Ig~~~~i~--~~v~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~~--------------- 338 (369)
T TIGR02092 277 PPTYYAENSKV-ENSLVANGCIIE--GKVENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLEN--------------- 338 (369)
T ss_pred CCcEEcCCCEE-EEeEEcCCCEEe--eEEeCCEECCCCEECCCCEEEeeEEeCCCEECCCCEEEE---------------
Confidence 55666666666 678889999996 468899999999999999999999999999999999976
Q ss_pred CCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcC
Q psy17795 473 NPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLP 509 (523)
Q Consensus 473 ~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~ 509 (523)
++||++++|++++.+.+..+.|
T Consensus 339 ---------------~ii~~~~~v~~~~~~~~~~~~~ 360 (369)
T TIGR02092 339 ---------------VIIDKDVVIEPNVKIAGTSEQP 360 (369)
T ss_pred ---------------EEECCCCEECCCCEeCCCCCcc
Confidence 7888899999888886654443
No 15
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=100.00 E-value=1.3e-42 Score=360.00 Aligned_cols=337 Identities=19% Similarity=0.303 Sum_probs=256.8
Q ss_pred EEEEecCCCCCCcCCCCCCCCCcccceeCCc-chHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCe-----
Q psy17795 96 TNDTTPGPLKGTRFRPLSLDSPKPLFPVAGL-PMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKI----- 169 (523)
Q Consensus 96 ~iila~g~g~g~R~~~lT~~~pK~ll~i~g~-pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~----- 169 (523)
||||||| +|+||+|+|..+||||+|++|+ |||+|+|+.|.++ |+++|+|+++++.+++.+|+.+. |+.
T Consensus 1 aiILAaG--~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~-gi~~i~iv~~~~~~~i~~~~~~~---~~~~~~~~ 74 (361)
T TIGR02091 1 AMVLAGG--RGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINS-GIRRIGVLTQYKSHSLNRHIQRG---WDFDGFID 74 (361)
T ss_pred CEEeCCC--CCCccchhhhCCccccceecceeeEeeehhhhhhhc-CCceEEEEeccChHHHHHHHHhc---cCccCccC
Confidence 5999999 9999999999999999999999 8999999999996 99999999999888999999852 221
Q ss_pred -eEEEEecccccchhhhhcccccccccCCCchhHHH--Hhhcc-cCCcceEEEEc--cch--HH--HHHHHHhcCCcceE
Q psy17795 170 -NIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLH-WVQEAVYFTLE--IRS--DV--VILMHSLYSMAILV 239 (523)
Q Consensus 170 -~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~-~~~d~~~Lvl~--i~~--D~--l~~~h~~~~~~~~~ 239 (523)
.+++....... ...+|..| |+++++ .+++. ..+++ |++++ .++ |+ +++.|+..+ +++
T Consensus 75 ~~~~~~~~~~~~--------~~~~~~~G--t~~al~~a~~~~~~~~~~~-~lv~~gD~l~~~~l~~~l~~~~~~~--~~~ 141 (361)
T TIGR02091 75 GFVTLLPAQQRE--------SGTDWYQG--TADAVYQNLDLIEDYDPEY-VLILSGDHIYKMDYEKMLDYHIESG--ADV 141 (361)
T ss_pred CCEEEeCCcccC--------CCCccccC--cHHHHHHHHHHHHhcCCCE-EEEecCCEEEcCCHHHHHHHHHHcC--CCE
Confidence 23333211110 11344556 999999 66665 22356 88887 433 44 788888776 778
Q ss_pred EEEEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCCcccc-------eeeeeEEEeeHHHH-HHHHHhhccccccccccc
Q psy17795 240 TVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVST-------LVNCGVYLFSLDIF-QNIAAVFQSKQDEFYNGN 311 (523)
Q Consensus 240 tv~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~-------l~~~Giyif~~~il-~~l~~~~~~~~~e~~~~~ 311 (523)
++++.+.+.+++..||.+..|++ ++|.+|.|||..+... ++++|+|+|++++| +.+.+.....
T Consensus 142 ti~~~~~~~~~~~~~g~v~~d~~-~~v~~~~ekp~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~-------- 212 (361)
T TIGR02091 142 TIACIPVPRKEASRFGVMQVDED-GRIVDFEEKPANPPSIPGMPDFALASMGIYIFDKDVLKELLEEDADDP-------- 212 (361)
T ss_pred EEEEEecChHhcccccEEEECCC-CCEEEEEECCCCcccccccccccEEeeeEEEEcHHHHHHHHHHHhhcC--------
Confidence 88887765556778999999876 8999999998655555 89999999999987 4444422111
Q ss_pred ccccCCCCCcccccchhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhccHHHHhhhcccCCcccccCCCceEecCcEE
Q psy17795 312 YMVNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQLYKTRHPERLQCSSQCKTIGDVYI 391 (523)
Q Consensus 312 ~~~~~~~~~~~~~~~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~an~~~l~~~~~~~~~~~~~~~~~~i~~~~~i 391 (523)
....++.+++++.+++++++++|..+++|.|++++++|+.+++.++....... .... ..........+
T Consensus 213 ---------~~~~~~~~d~l~~l~~~~~v~~~~~~~~w~digt~~~~~~a~~~~l~~~~~~~--~~~~-~~~~~~~~~~~ 280 (361)
T TIGR02091 213 ---------ESSHDFGKDIIPRALEEGSVQAYLFSGYWRDVGTIDSFWEANMDLVSVVPPFD--LYDR-KWPIYTYNEFL 280 (361)
T ss_pred ---------CcccccHHHHHHHHhhcCceEEEeeCCEEEECCCHHHHHHHHHHHhCCCchhh--cccc-CCceecCCCCC
Confidence 01234557999999999999999999999999999999999999996532111 1000 01111122345
Q ss_pred CCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCCCCCCCceec
Q psy17795 392 HSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKM 471 (523)
Q Consensus 392 ~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I 471 (523)
.+.++|++++.| ++++||++|+|+++ .|.+|+||++|.|+++|+|.+|+|++++.||+++.|.+
T Consensus 281 ~~~~~i~~~~~i-~~~~ig~~~~I~~~-~v~~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~-------------- 344 (361)
T TIGR02091 281 PPAKFVDSDAQV-VDSLVSEGCIISGA-TVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRN-------------- 344 (361)
T ss_pred CCceEecCCCEE-ECCEECCCCEECCC-EEEccEECCCCEECCCCEEeeeEEeCCCEECCCCEEee--------------
Confidence 566666666655 67899999999976 88899999999999999999999999999999999975
Q ss_pred CCCCeecCCCeecCCcEEeCCCCEECCCcEEeC
Q psy17795 472 DNPPLFNSNGKLNPSITILGDGVTVPGELIVLN 504 (523)
Q Consensus 472 ~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~ 504 (523)
++||+++.|+++++|.|
T Consensus 345 ----------------~ivg~~~~i~~~~~i~~ 361 (361)
T TIGR02091 345 ----------------AIIDKNVRIGEGVVIGN 361 (361)
T ss_pred ----------------eEECCCCEECCCCEeCC
Confidence 77888888888887753
No 16
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2.2e-41 Score=363.47 Aligned_cols=375 Identities=17% Similarity=0.209 Sum_probs=262.7
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEE
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRY 173 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~ 173 (523)
+.+|||||| +|+||++ .+||+|+|++|+|||+|+|++|.+. ++++++|++++..+.+.+++.+. ...+.+
T Consensus 5 ~~avILAaG--~gtRm~~---~~pK~llpi~gkpli~~~l~~l~~~-g~~~iivvv~~~~~~i~~~~~~~----~~~~~~ 74 (482)
T PRK14352 5 TAVIVLAAG--AGTRMRS---DTPKVLHTLAGRSMLGHVLHAAAGL-APQHLVVVVGHDRERVAPAVAEL----APEVDI 74 (482)
T ss_pred ceEEEEcCC--CCCcCCC---CCCceeceeCCccHHHHHHHHHHhc-CCCcEEEEECCCHHHHHHHhhcc----CCccEE
Confidence 459999999 9999998 7899999999999999999999986 99999999999888888888752 123455
Q ss_pred EecccccchhhhhcccccccccCCCchhHHH--Hhhcc-cCCcceEEEEc----cc--hHH--HHHHHHhcCCcceEEEE
Q psy17795 174 LQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLH-WVQEAVYFTLE----IR--SDV--VILMHSLYSMAILVTVM 242 (523)
Q Consensus 174 ~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~-~~~d~~~Lvl~----i~--~D~--l~~~h~~~~~~~~~tv~ 242 (523)
+.++++.| |+++++ ++++. ..+++ ||+++ ++ .++ +++.|++.+ +.++++
T Consensus 75 ~~~~~~~G-----------------t~~si~~al~~l~~~~~~~-vlV~~gD~P~~~~~~l~~li~~~~~~~--~~~~v~ 134 (482)
T PRK14352 75 AVQDEQPG-----------------TGHAVQCALEALPADFDGT-VVVTAGDVPLLDGETLADLVATHTAEG--NAVTVL 134 (482)
T ss_pred EeCCCCCC-----------------cHHHHHHHHHHhccCCCCe-EEEEeCCeeccCHHHHHHHHHHHHhcC--CeEEEE
Confidence 66666677 999998 66765 22356 78877 22 233 777787766 777777
Q ss_pred EEeeCCCCCcceeEEEEcCCCCcEEEEeecCCCc----ccceeeeeEEEeeHHHHHH-HHHhhccc-ccccccccccccC
Q psy17795 243 ATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTF----VSTLVNCGVYLFSLDIFQN-IAAVFQSK-QDEFYNGNYMVNG 316 (523)
Q Consensus 243 ~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~----~~~l~~~Giyif~~~il~~-l~~~~~~~-~~e~~~~~~~~~~ 316 (523)
..+.. ++..||.+..|++ ++|.+|.|||... ...++++|+|+|++++|.. +.+..... ++||++
T Consensus 135 ~~~~~--~p~~yg~~~~~~~-g~V~~~~EKp~~~~~~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~l------- 204 (482)
T PRK14352 135 TTTLD--DPTGYGRILRDQD-GEVTAIVEQKDATPSQRAIREVNSGVYAFDAAVLRSALARLSSDNAQGELYL------- 204 (482)
T ss_pred EeecC--CCCCCCEEEECCC-CCEEEEEECCCCCHHHhhcceEEEEEEEEEHHHHHHHHHhhCccccCCcEeH-------
Confidence 76653 5678999888876 8999999998743 2457999999999998854 44433222 244443
Q ss_pred CCCCcccccchhhhhhhhhcCC-cEEEEEcchhHhhhccchhh------hhccHHHHhhhcccCCcccccCCCceEecCc
Q psy17795 317 KDTDFNHIQLEKEIIMPLAGSG-KAYVYQTSKWWSQLKSAGSA------IYANRHYLQLYKTRHPERLQCSSQCKTIGDV 389 (523)
Q Consensus 317 ~~~~~~~~~~~~dil~~li~~g-~v~~~~~~g~w~dIgt~~dy------l~an~~~l~~~~~~~~~~~~~~~~~~i~~~~ 389 (523)
+|+++.+++.| ++++|..++||.++++++.+ ..++..++..+....+..+. ...+.|.+++
T Consensus 205 -----------~d~i~~l~~~g~~V~~~~~~g~w~~~g~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~-~~~~~i~~~v 272 (482)
T PRK14352 205 -----------TDVLAIAREAGHRVGAHHADDSAEVAGVNDRVQLAALGAELNRRIVEAWMRAGVTIVD-PATTWIDVDV 272 (482)
T ss_pred -----------HHHHHHHHHCCCeEEEEecCCcceEEcCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEC-CCeEEEeCCE
Confidence 79999999988 59999999999999988776 44454445433222221111 1246788888
Q ss_pred EECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEc-------------
Q psy17795 390 YIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVE------------- 456 (523)
Q Consensus 390 ~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~------------- 456 (523)
+|++++.|++++.|+++++||++|.|+++|.|.+++||++|.|+. +.+.+++|++++.||+++.+.
T Consensus 273 ~ig~~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~-~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~ 351 (482)
T PRK14352 273 TIGRDVVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVR-THGSESEIGAGATVGPFTYLRPGTVLGEEGKLGA 351 (482)
T ss_pred EECCCcEEeCCcEEeecCEECCCCEECCCCEEecCEECCCCEEee-eeeecCEEcCCCEECCCeEecCCcEEcCCCEECC
Confidence 888888888888888888888888888888887777766666542 344444444444444433332
Q ss_pred -----CCCCCCCC------CCCceecCCCCeecCCCeecC------CcEEeCCCCEECCCcEE-------eCeEEcCCcE
Q psy17795 457 -----GTPCDPNP------NKAFAKMDNPPLFNSNGKLNP------SITILGDGVTVPGELIV-------LNSIVLPYKE 512 (523)
Q Consensus 457 -----~~~~~~~~------~~~~v~I~~~~~ig~~~~i~~------g~~iIG~~~~Ig~~~~i-------~~~~v~~~~~ 512 (523)
++.++.+. .-+.+.||++|.||.++.+.. +.++||++|.||.+++| .+++|++++.
T Consensus 352 ~~~~~~~~I~~~~~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i~~~~~Ig~~~~igags~ 431 (482)
T PRK14352 352 FVETKNATIGRGTKVPHLTYVGDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAPVTVGDGAYTGAGTV 431 (482)
T ss_pred cEEEcccEECCCcEEccCceecccEECCCcEECCCcEEeccccccCCCCeECCCcEECCCCEEeCCCEECCCcEECCCCE
Confidence 11111111 112346777888887766543 22677888777777765 4567777777
Q ss_pred eCCCCCCcc
Q psy17795 513 LTRSFKNEI 521 (523)
Q Consensus 513 i~~~~~~~~ 521 (523)
|.+++|+..
T Consensus 432 v~~~v~~~~ 440 (482)
T PRK14352 432 IREDVPPGA 440 (482)
T ss_pred EcCCCCCCc
Confidence 777777543
No 17
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=4.9e-40 Score=350.20 Aligned_cols=378 Identities=17% Similarity=0.182 Sum_probs=265.0
Q ss_pred cccceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCe
Q psy17795 90 VSCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKI 169 (523)
Q Consensus 90 ~~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~ 169 (523)
.|+.+.||||||| .|+||++ ..||+|+|++|+|||+|++++|.+. ++++++|++++..+.+.+++.+ ++.
T Consensus 2 ~~~~~~aiILAaG--~gsR~~~---~~pK~ll~v~gkpli~~~l~~l~~~-gi~~ivvv~~~~~~~i~~~~~~----~~~ 71 (446)
T PRK14353 2 TDRTCLAIILAAG--EGTRMKS---SLPKVLHPVAGRPMLAHVLAAAASL-GPSRVAVVVGPGAEAVAAAAAK----IAP 71 (446)
T ss_pred ccccceEEEEcCC--CCCccCC---CCCcccCEECCchHHHHHHHHHHhC-CCCcEEEEECCCHHHHHHHhhc----cCC
Confidence 3567889999999 9999986 7899999999999999999999986 9999999999988889888865 222
Q ss_pred eEEEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--c-c--hHH---HHHHHHhcCCcceE
Q psy17795 170 NIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--I-R--SDV---VILMHSLYSMAILV 239 (523)
Q Consensus 170 ~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i-~--~D~---l~~~h~~~~~~~~~ 239 (523)
++.+..+.++.| ++++++ ++++....++ |++++ . + .+. +++.+ +.+ +++
T Consensus 72 ~~~~~~~~~~~G-----------------~~~sl~~a~~~l~~~~~~-~lv~~~D~P~i~~~~l~~l~~~~-~~~--~~~ 130 (446)
T PRK14353 72 DAEIFVQKERLG-----------------TAHAVLAAREALAGGYGD-VLVLYGDTPLITAETLARLRERL-ADG--ADV 130 (446)
T ss_pred CceEEEcCCCCC-----------------cHHHHHHHHHHHhccCCC-EEEEeCCcccCCHHHHHHHHHhH-hcC--CcE
Confidence 344455555666 899998 6666422466 78877 2 2 122 44432 344 677
Q ss_pred EEEEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCCc----ccceeeeeEEEeeHHHH-HHHHHhhccc-cccccccccc
Q psy17795 240 TVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTF----VSTLVNCGVYLFSLDIF-QNIAAVFQSK-QDEFYNGNYM 313 (523)
Q Consensus 240 tv~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~----~~~l~~~Giyif~~~il-~~l~~~~~~~-~~e~~~~~~~ 313 (523)
++++.+.. ++..||.+..+ + ++|.++.|||... ...++++|+|+|+++.| +.+++..... .++|++
T Consensus 131 ~i~~~~~~--~~~~~g~~~~~-~-g~v~~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~---- 202 (446)
T PRK14353 131 VVLGFRAA--DPTGYGRLIVK-G-GRLVAIVEEKDASDEERAITLCNSGVMAADGADALALLDRVGNDNAKGEYYL---- 202 (446)
T ss_pred EEEEEEeC--CCCcceEEEEC-C-CeEEEEEECCCCChHHhhceEEEEEEEEEEHHHHHHHHHhhcccCCCCcEeH----
Confidence 77777653 45789987774 4 8999999997532 23688999999998755 5555432211 233332
Q ss_pred ccCCCCCcccccchhhhhhhhhcCCc-EEEEEcc-hhHhhhccchhhhhccHHHHhhhc--ccCC-cccccCCCceEecC
Q psy17795 314 VNGKDTDFNHIQLEKEIIMPLAGSGK-AYVYQTS-KWWSQLKSAGSAIYANRHYLQLYK--TRHP-ERLQCSSQCKTIGD 388 (523)
Q Consensus 314 ~~~~~~~~~~~~~~~dil~~li~~g~-v~~~~~~-g~w~dIgt~~dyl~an~~~l~~~~--~~~~-~~~~~~~~~~i~~~ 388 (523)
+++++.+++.|. ++++..+ ++|.++++++||..++..+..... .... ..+..+....+++.
T Consensus 203 --------------~d~~~~l~~~g~~v~~~~~~~~~~~~I~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (446)
T PRK14353 203 --------------TDIVAIARAEGLRVAVVEAPEDEVRGINSRAELAEAEAVWQARRRRAAMLAGVTLIAPETVFFSYD 268 (446)
T ss_pred --------------HHHHHHHHHCCCeEEEEecChhhcccCCCHHHHHHHHHHHHHHHHHHHHHCCCEeeCCCeEEECCc
Confidence 688999988875 8898886 579999999999999876654321 0000 00010012356677
Q ss_pred cEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEe-ceEECCCCEECCCcEEcCCCCCCCC---
Q psy17795 389 VYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVL-NSIVGRNSKVGNWSRVEGTPCDPNP--- 464 (523)
Q Consensus 389 ~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i~~~~~~~~~--- 464 (523)
+.|++++.|++++.|++++.||++|.|++++.|.+++||++|.||+++.|. +++||++|.||+++.+.+..++.+.
T Consensus 269 ~~I~~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~ 348 (446)
T PRK14353 269 TVIGRDVVIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVN 348 (446)
T ss_pred eEECCCCEECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCCEEC
Confidence 788888888888888888888888888888888778888888888888887 7888888888888877554333221
Q ss_pred ---CCCceecCCCCeecCCCee-------cCCcEEeCCCCEECCCcEE-------eCeEEcCCcEeCCCCCCcc
Q psy17795 465 ---NKAFAKMDNPPLFNSNGKL-------NPSITILGDGVTVPGELIV-------LNSIVLPYKELTRSFKNEI 521 (523)
Q Consensus 465 ---~~~~v~I~~~~~ig~~~~i-------~~g~~iIG~~~~Ig~~~~i-------~~~~v~~~~~i~~~~~~~~ 521 (523)
....+.|++++.||+++++ ..+ ++||++|+||++++| .+++|++++.|.+++|...
T Consensus 349 ~~~~i~~~~ig~~~~Ig~~~~~~~~~~~~~~~-~~Ig~~~~ig~~~~i~~~~~Ig~~~~ig~~s~v~~~v~~~~ 421 (446)
T PRK14353 349 HLTYIGDATIGAGANIGAGTITCNYDGFNKHR-TEIGAGAFIGSNSALVAPVTIGDGAYIASGSVITEDVPDDA 421 (446)
T ss_pred CeeEEcCcEEcCCcEECCceeeeccccccCCC-cEECCCcEECCCCEEeCCCEECCCCEECCCCEECccCCCCC
Confidence 1123567777777776544 223 566777777777665 3556667777777776443
No 18
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=100.00 E-value=8.1e-40 Score=349.06 Aligned_cols=373 Identities=20% Similarity=0.278 Sum_probs=260.9
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEE
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRY 173 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~ 173 (523)
|++|||||| +|+||++ .+||||+|++|+|||+|+++++.+. +++++++++++..+.+.+++.+ ++ +.+
T Consensus 1 m~aiIlAaG--~g~R~~~---~~pK~l~~i~gkpli~~~l~~l~~~-g~~~iiiv~~~~~~~i~~~~~~----~~--i~~ 68 (451)
T TIGR01173 1 LSVVILAAG--KGTRMKS---DLPKVLHPLAGKPMLEHVIDAARAL-GPQKIHVVYGHGAEQVRKALAN----RD--VNW 68 (451)
T ss_pred CeEEEEcCC--CCcccCC---CCchhhceeCCccHHHHHHHHHHhC-CCCeEEEEECCCHHHHHHHhcC----CC--cEE
Confidence 689999999 9999998 8999999999999999999999986 9999999999988889888875 33 445
Q ss_pred EecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--c--ch--HH--HHHHHHhcCCcceEEEEE
Q psy17795 174 LQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--I--RS--DV--VILMHSLYSMAILVTVMA 243 (523)
Q Consensus 174 ~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i--~~--D~--l~~~h~~~~~~~~~tv~~ 243 (523)
+.+.+++| ++++++ .+++.. .++ |++++ . +. ++ ++++|.+. .+++++
T Consensus 69 ~~~~~~~G-----------------~~~ai~~a~~~l~~-~~~-~lv~~~D~p~i~~~~~~~l~~~~~~~----~~~~~~ 125 (451)
T TIGR01173 69 VLQAEQLG-----------------TGHAVLQALPFLPD-DGD-VLVLYGDVPLISAETLERLLEAHRQN----GITLLT 125 (451)
T ss_pred EEcCCCCc-----------------hHHHHHHHHHhcCC-CCc-EEEEECCcCCcCHHHHHHHHHHHhhC----CEEEEE
Confidence 55655667 999999 677752 256 78876 2 22 23 56666542 356666
Q ss_pred EeeCCCCCcceeEEEEcCCCCcEEEEeecCCCc----ccceeeeeEEEeeHHHH-HHHHHhhccc-ccccccccccccCC
Q psy17795 244 TEATRQQSVYYGCIVRKQQTSEISHYVEKPSTF----VSTLVNCGVYLFSLDIF-QNIAAVFQSK-QDEFYNGNYMVNGK 317 (523)
Q Consensus 244 ~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~----~~~l~~~Giyif~~~il-~~l~~~~~~~-~~e~~~~~~~~~~~ 317 (523)
.+.+ ++..||.+..|++ ++|.++.|||... ..+++++|+|+|++++| +.+.+..... ++|+++
T Consensus 126 ~~~~--~~~~~g~v~~d~~-g~v~~~~ek~~~~~~~~~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~~e~~~-------- 194 (451)
T TIGR01173 126 AKLP--DPTGYGRIIREND-GKVTAIVEDKDANAEQKAIKEINTGVYVFDGAALKRWLPKLSNNNAQGEYYL-------- 194 (451)
T ss_pred EecC--CCCCCCEEEEcCC-CCEEEEEEcCCCChHHhcCcEEEEEEEEEeHHHHHHHHHhcccccccCcEeH--------
Confidence 6653 4567999888876 8999999987532 23578999999999975 5454432211 233332
Q ss_pred CCCcccccchhhhhhhhhcCCc-EEEEEcchh--HhhhccchhhhhccHHHHhhhccc--CC-cccccCCCceEecCcEE
Q psy17795 318 DTDFNHIQLEKEIIMPLAGSGK-AYVYQTSKW--WSQLKSAGSAIYANRHYLQLYKTR--HP-ERLQCSSQCKTIGDVYI 391 (523)
Q Consensus 318 ~~~~~~~~~~~dil~~li~~g~-v~~~~~~g~--w~dIgt~~dyl~an~~~l~~~~~~--~~-~~~~~~~~~~i~~~~~i 391 (523)
+++++.+++++. +++|..+++ |.++++++++..++..+..+.... .+ ......+...+.+++.|
T Consensus 195 ----------~~~~~~l~~~g~~v~~~~~~~~~~~~~i~t~~dl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~i 264 (451)
T TIGR01173 195 ----------TDVIALAVADGETVRAVQVDDSDEVLGVNDRLQLAQLERILQRRIAKKLLLAGVTLRDPARFDIRGTVEI 264 (451)
T ss_pred ----------HHHHHHHHHCCCeEEEEEcCChhheecCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeEEECCccEE
Confidence 689999998874 999999888 789999999888766554321110 01 11111124467788888
Q ss_pred CCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcC-CCCCC------CC
Q psy17795 392 HSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEG-TPCDP------NP 464 (523)
Q Consensus 392 ~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~-~~~~~------~~ 464 (523)
++++.|++++.|+++++||++|.|+++|.|.+++||++|.|+++|.|.+++||++|.||+++.|.+ ..++. ..
T Consensus 265 g~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~ 344 (451)
T TIGR01173 265 GRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFV 344 (451)
T ss_pred CCCCEEcCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccce
Confidence 888888888888888888888888888888888888888888777777777776666666666542 11111 00
Q ss_pred C-----------------CCceecCCCCeecCCCeecC------CcEEeCCCCEECCCcEE-------eCeEEcCCcEeC
Q psy17795 465 N-----------------KAFAKMDNPPLFNSNGKLNP------SITILGDGVTVPGELIV-------LNSIVLPYKELT 514 (523)
Q Consensus 465 ~-----------------~~~v~I~~~~~ig~~~~i~~------g~~iIG~~~~Ig~~~~i-------~~~~v~~~~~i~ 514 (523)
. -+.+.||+++.||.++.+.. ..++||++|.||.+++| .+++|++++.|+
T Consensus 345 ~i~~~~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~g~~v~ 424 (451)
T TIGR01173 345 ETKNARIGKGSKAGHLSYLGDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAPVKVGDGATIAAGSTVT 424 (451)
T ss_pred eecCcEECCCcEecceeeEeeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCCEEECCcEECCCCEEccCCEEC
Confidence 0 01245556666665544321 12556777777776644 567888888888
Q ss_pred CCCCCccc
Q psy17795 515 RSFKNEIL 522 (523)
Q Consensus 515 ~~~~~~~i 522 (523)
.++|+..+
T Consensus 425 ~~v~~~~~ 432 (451)
T TIGR01173 425 KDVPEGAL 432 (451)
T ss_pred ccCCCCcE
Confidence 88886554
No 19
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.5e-39 Score=344.99 Aligned_cols=369 Identities=17% Similarity=0.182 Sum_probs=244.2
Q ss_pred cceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeE
Q psy17795 92 CGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINI 171 (523)
Q Consensus 92 ~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i 171 (523)
|.++||||||| +|+||++ .+||||+|++|+|||+|+++.+.+. +++++|++++..+.+.+++.+. + ..+
T Consensus 1 m~~~aiIlAaG--~GtRl~~---~~pK~Llpi~gkPli~~~i~~l~~~--~~~i~Ivv~~~~~~i~~~~~~~---~-~~v 69 (430)
T PRK14359 1 MKLSIIILAAG--KGTRMKS---SLPKVLHTICGKPMLFYILKEAFAI--SDDVHVVLHHQKERIKEAVLEY---F-PGV 69 (430)
T ss_pred CCccEEEEcCC--CCccCCC---CCCceeCEECCccHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHhc---C-Cce
Confidence 55789999999 9999998 8999999999999999999999974 6889999999999999998762 1 135
Q ss_pred EEEecc--cccchhhhhcccccccccCCCchhHHHHhhcccCCcceEEEEc--c-c-hHHHHHHHHhcCCcceEEEEEEe
Q psy17795 172 RYLQEF--WDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYFTLE--I-R-SDVVILMHSLYSMAILVTVMATE 245 (523)
Q Consensus 172 ~~~~~~--~~~g~~~~~~~~~~~~~~g~~ta~al~~~~i~~~~d~~~Lvl~--i-~-~D~l~~~h~~~~~~~~~tv~~~~ 245 (523)
.++.++ ..+| |+++++. .....++ ||+++ . + .+-.++.+.+.+ +++++.+.+
T Consensus 70 ~~~~~~~~~~~g-----------------t~~al~~--~~~~~d~-vlv~~gD~p~~~~~~l~~l~~~~--~~~~v~~~~ 127 (430)
T PRK14359 70 IFHTQDLENYPG-----------------TGGALMG--IEPKHER-VLILNGDMPLVEKDELEKLLEND--ADIVMSVFH 127 (430)
T ss_pred EEEEecCccCCC-----------------cHHHHhh--cccCCCe-EEEEECCccCCCHHHHHHHHhCC--CCEEEEEEE
Confidence 555443 2355 8999982 1112356 88887 2 2 222455555555 677777777
Q ss_pred eCCCCCcceeEEEEcCCCCcEEEEeecCCCc----ccceeeeeEEEeeHHHHHHHHHhhccc--ccccccccccccCCCC
Q psy17795 246 ATRQQSVYYGCIVRKQQTSEISHYVEKPSTF----VSTLVNCGVYLFSLDIFQNIAAVFQSK--QDEFYNGNYMVNGKDT 319 (523)
Q Consensus 246 ~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~----~~~l~~~Giyif~~~il~~l~~~~~~~--~~e~~~~~~~~~~~~~ 319 (523)
++ ++..||.+..| + ++|..+.|+|... ..++.++|+|+|++++|..+....... ++||++
T Consensus 128 ~~--~~~~~g~v~~d-~-g~v~~i~e~~~~~~~~~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~~e~~l---------- 193 (430)
T PRK14359 128 LA--DPKGYGRVVIE-N-GQVKKIVEQKDANEEELKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQKEYYL---------- 193 (430)
T ss_pred cC--CCccCcEEEEc-C-CeEEEEEECCCCCcccccceEEEeEEEEEEHHHHHHHHHhcCcccccCceeh----------
Confidence 64 45679987765 4 8999999987532 246889999999999988664322211 234443
Q ss_pred CcccccchhhhhhhhhcCCc-EEEEEcc-hhHhhhccchhhhhccHHHHhhhcc---------cCCcccccCCCceEecC
Q psy17795 320 DFNHIQLEKEIIMPLAGSGK-AYVYQTS-KWWSQLKSAGSAIYANRHYLQLYKT---------RHPERLQCSSQCKTIGD 388 (523)
Q Consensus 320 ~~~~~~~~~dil~~li~~g~-v~~~~~~-g~w~dIgt~~dyl~an~~~l~~~~~---------~~~~~~~~~~~~~i~~~ 388 (523)
+|+++.+++.|. +.++..+ ++|.|+++++||+.++..++.+... ..+......+++.|.++
T Consensus 194 --------~d~i~~l~~~g~~v~~~~~~~~~w~dI~t~~dl~~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g~ 265 (430)
T PRK14359 194 --------TDIIALAIEKGETIKAVFVDEENFMGVNSKFELAKAEEIMQERIKKNAMKQGVIMRLPETIYIESGVEFEGE 265 (430)
T ss_pred --------hhHHHHHHHcCCeEEEEEcCCCEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCeeEECCCcEEcCc
Confidence 688998888764 8888886 6899999999999998766544221 11212222256777788
Q ss_pred cEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCCCCCCCc
Q psy17795 389 VYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPNKAF 468 (523)
Q Consensus 389 ~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~ 468 (523)
+.|++++.|++++.|+ +++||++|.|++ +.|.+++||++|.|+++|+|.+|+||++|.|++.+ +.++.++....-..
T Consensus 266 ~~ig~~~~I~~~~~i~-~~~i~~~~~I~~-~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~-~~~~~i~~~~~i~d 342 (430)
T PRK14359 266 CELEEGVRILGKSKIE-NSHIKAHSVIEE-SIIENSDVGPLAHIRPKSEIKNTHIGNFVETKNAK-LNGVKAGHLSYLGD 342 (430)
T ss_pred eEECCCCEECCCeEEE-eeEECCCCEEec-cEEeCCEECCCCEECCCcEEeccEEcCcEEEcccE-eccccccccccccC
Confidence 8888888888887775 777777777765 55566777777777777777666666666555532 23333333333334
Q ss_pred eecCCCCeecCCCeecCC------cEEeCCCCEECCCcEE-------eCeEEcCCcEeCCCCC
Q psy17795 469 AKMDNPPLFNSNGKLNPS------ITILGDGVTVPGELIV-------LNSIVLPYKELTRSFK 518 (523)
Q Consensus 469 v~I~~~~~ig~~~~i~~g------~~iIG~~~~Ig~~~~i-------~~~~v~~~~~i~~~~~ 518 (523)
+.||++|.||.++.+... .++||++|.||+++.| .+++|++++.|.+++|
T Consensus 343 ~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~~g~~v~~~v~ 405 (430)
T PRK14359 343 CEIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLVAPVNIEDNVLIAAGSTVTKDVP 405 (430)
T ss_pred CEECCCCEECCCceEccccCccCcCCEECCCeEEcCCCEEeCCcEECCCCEECCCCEEccccC
Confidence 455555555554433211 1344444444444433 2344445555555554
No 20
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.3e-39 Score=347.58 Aligned_cols=373 Identities=17% Similarity=0.204 Sum_probs=242.8
Q ss_pred ccceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCee
Q psy17795 91 SCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKIN 170 (523)
Q Consensus 91 ~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~ 170 (523)
||.|++|||||| +|+||++ ..||||+|++|+|||+|+++.|.+. +++++++++++..+.+++++... +
T Consensus 3 ~~~~~aiIlAaG--~gtRl~~---~~pK~l~~i~gkpli~~~i~~l~~~-gi~~i~vv~~~~~~~i~~~~~~~------~ 70 (456)
T PRK09451 3 NSAMSVVILAAG--KGTRMYS---DLPKVLHTLAGKPMVQHVIDAANEL-GAQHVHLVYGHGGDLLKQTLADE------P 70 (456)
T ss_pred CCCceEEEEcCC--CCCcCCC---CCChhcceeCChhHHHHHHHHHHhc-CCCcEEEEECCCHHHHHHhhccC------C
Confidence 567899999999 9999995 7999999999999999999999986 99999999999888888888641 3
Q ss_pred EEEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--c--ch--HH--HHHHHHhcCCcceEE
Q psy17795 171 IRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--I--RS--DV--VILMHSLYSMAILVT 240 (523)
Q Consensus 171 i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i--~~--D~--l~~~h~~~~~~~~~t 240 (523)
+.++.+++++| |+++++ ++++.. .++ ||+++ . +. ++ +++.|++. .++
T Consensus 71 ~~~i~~~~~~G-----------------t~~al~~a~~~l~~-~~~-vlV~~gD~P~i~~~~i~~l~~~~~~~----~~~ 127 (456)
T PRK09451 71 LNWVLQAEQLG-----------------TGHAMQQAAPFFAD-DED-ILMLYGDVPLISVETLQRLRDAKPQG----GIG 127 (456)
T ss_pred cEEEECCCCCC-----------------cHHHHHHHHHhhcc-CCc-EEEEeCCcccCCHHHHHHHHHHhhcC----CEE
Confidence 55666666777 999999 666642 356 88877 2 32 33 55555433 345
Q ss_pred EEEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCCc----ccceeeeeEEEeeHHHHH-HHHHhhccc-ccccccccccc
Q psy17795 241 VMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTF----VSTLVNCGVYLFSLDIFQ-NIAAVFQSK-QDEFYNGNYMV 314 (523)
Q Consensus 241 v~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~----~~~l~~~Giyif~~~il~-~l~~~~~~~-~~e~~~~~~~~ 314 (523)
+++.+++ ++..||.+.. ++ ++|.+|.|||... .++++++|+|+|++++|. .+.+..... .+||++
T Consensus 128 i~~~~~~--~~~~yG~v~~-~~-g~V~~~~EKp~~~~~~~~~~~~~~GiYi~~~~~l~~~l~~~~~~~~~~e~~l----- 198 (456)
T PRK09451 128 LLTVKLD--NPTGYGRITR-EN-GKVVGIVEQKDATDEQRQIQEINTGILVANGADLKRWLAKLTNNNAQGEYYI----- 198 (456)
T ss_pred EEEEEcC--CCCCceEEEe-cC-CeEEEEEECCCCChHHhhccEEEEEEEEEEHHHHHHHHHhcCCccccCceeH-----
Confidence 5665553 5678998754 45 8999999998532 246899999999998775 454433221 244433
Q ss_pred cCCCCCcccccchhhhhhhhhcCC-cEEEEE------cchh--HhhhccchhhhhccHH--HHh-hhcccCCcccc----
Q psy17795 315 NGKDTDFNHIQLEKEIIMPLAGSG-KAYVYQ------TSKW--WSQLKSAGSAIYANRH--YLQ-LYKTRHPERLQ---- 378 (523)
Q Consensus 315 ~~~~~~~~~~~~~~dil~~li~~g-~v~~~~------~~g~--w~dIgt~~dyl~an~~--~l~-~~~~~~~~~~~---- 378 (523)
+|+++.++++| ++.+|. ..|| |.+++++++|++++.. ++. ......|....
T Consensus 199 -------------~d~i~~~i~~g~~v~~~~~~~~~~~~G~~~~~di~~~~~y~~~~~~~~~l~~~~~~~~p~~~~~~~~ 265 (456)
T PRK09451 199 -------------TDIIALAHQEGREIVAVHPQRLSEVEGVNNRLQLARLERVYQAEQAEKLLLAGVMLRDPARFDLRGT 265 (456)
T ss_pred -------------HHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCEEEECCc
Confidence 79999999987 488885 3555 7889999999998742 322 11111121110
Q ss_pred --------cCCCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEe-ceEECCCCEE
Q psy17795 379 --------CSSQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVL-NSIVGRNSKV 449 (523)
Q Consensus 379 --------~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~-~~iIg~~~~I 449 (523)
..+++.|.+++.|++++.|++++.| .+++||++|.|++++.|.+++||++|.|++++.|. ++.|++++.|
T Consensus 266 ~~ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i-~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~i 344 (456)
T PRK09451 266 LTHGRDVEIDTNVIIEGNVTLGNRVKIGAGCVL-KNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHV 344 (456)
T ss_pred EEECCCCEEcCCeEEecCcEECCCCEECCCceE-ecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCcee
Confidence 0033444444455555555555555 34555556666666666556666666666666665 5556666555
Q ss_pred CCCcEEcCCCCCCC------CCCCceecCCCCeecCCCeecC------CcEEeCCCCEECCCcEE-------eCeEEcCC
Q psy17795 450 GNWSRVEGTPCDPN------PNKAFAKMDNPPLFNSNGKLNP------SITILGDGVTVPGELIV-------LNSIVLPY 510 (523)
Q Consensus 450 g~~~~i~~~~~~~~------~~~~~v~I~~~~~ig~~~~i~~------g~~iIG~~~~Ig~~~~i-------~~~~v~~~ 510 (523)
|+++.|.++.++.+ ...+.+.||++|.||+++.+.. ..++||++|.||.+++| .+++|+++
T Consensus 345 g~~~~i~~~~i~~~~~~~~~~~~g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~g 424 (456)
T PRK09451 345 GNFVEMKKARLGKGSKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIGAG 424 (456)
T ss_pred ccceeeeceeeCCCCccCccccccccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCCCEEeCCcEECCCCEECCC
Confidence 55555433322221 1123456777777776654321 12456666666666654 45677777
Q ss_pred cEeCCCCCCcc
Q psy17795 511 KELTRSFKNEI 521 (523)
Q Consensus 511 ~~i~~~~~~~~ 521 (523)
+.|++++|+..
T Consensus 425 s~v~~~v~~~~ 435 (456)
T PRK09451 425 TTVTRDVAENE 435 (456)
T ss_pred CEEccccCCCC
Confidence 78888887543
No 21
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2.2e-39 Score=346.19 Aligned_cols=373 Identities=15% Similarity=0.184 Sum_probs=254.9
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEE
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRY 173 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~ 173 (523)
++||||||| +|+||+. ..||+|+|++|+|||+|++++|.+. ++++++|++++..+.+++++.+ . .+++
T Consensus 6 ~~aiILAaG--~gtR~~~---~~pK~l~~i~gkpli~~~l~~l~~~-~~~~iivv~~~~~~~i~~~~~~----~--~~~~ 73 (456)
T PRK14356 6 TGALILAAG--KGTRMHS---DKPKVLQTLLGEPMLRFVYRALRPL-FGDNVWTVVGHRADMVRAAFPD----E--DARF 73 (456)
T ss_pred eeEEEEcCC--CCccCCC---CCCceecccCCCcHHHHHHHHHHhc-CCCcEEEEECCCHHHHHHhccc----c--CceE
Confidence 679999999 9999985 8999999999999999999999986 8999999999988888887754 1 3456
Q ss_pred EecccccchhhhhcccccccccCCCchhHHH--Hhhcc-cCCcceEEEEc--c--ch--HH--HHHHHHhcCCcceEEEE
Q psy17795 174 LQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLH-WVQEAVYFTLE--I--RS--DV--VILMHSLYSMAILVTVM 242 (523)
Q Consensus 174 ~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~-~~~d~~~Lvl~--i--~~--D~--l~~~h~~~~~~~~~tv~ 242 (523)
+.++.+.| |+++++ .+++. ...++ +++++ . +. ++ +++.|+ + ++.+++
T Consensus 74 v~~~~~~G-----------------t~~al~~a~~~l~~~~~d~-vlv~~gD~P~i~~~~i~~li~~~~--~--~~~~l~ 131 (456)
T PRK14356 74 VLQEQQLG-----------------TGHALQCAWPSLTAAGLDR-VLVVNGDTPLVTTDTIDDFLKEAA--G--ADLAFM 131 (456)
T ss_pred EEcCCCCC-----------------cHHHHHHHHHHHhhcCCCc-EEEEeCCcccCCHHHHHHHHHHHh--c--CCEEEE
Confidence 66666677 999998 67775 22466 88877 2 21 22 555554 3 667777
Q ss_pred EEeeCCCCCcceeEEEEcCCCCcEEEEeecCCC------cccceeeeeEEEeeHHHHHHHHHhhcc-c-ccccccccccc
Q psy17795 243 ATEATRQQSVYYGCIVRKQQTSEISHYVEKPST------FVSTLVNCGVYLFSLDIFQNIAAVFQS-K-QDEFYNGNYMV 314 (523)
Q Consensus 243 ~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~------~~~~l~~~Giyif~~~il~~l~~~~~~-~-~~e~~~~~~~~ 314 (523)
+.+++ ++..||.+..+ + |+|.+|.|||.. +.++++++|+|+|++++++.+.+.+.. . .+||++
T Consensus 132 ~~~~~--~~~~~g~v~~~-~-g~V~~~~ek~~~~~~~~~~~~~~~~~GiY~f~~~~l~~ll~~l~~~~~~~e~~l----- 202 (456)
T PRK14356 132 TLTLP--DPGAYGRVVRR-N-GHVAAIVEAKDYDEALHGPETGEVNAGIYYLRLDAVESLLPRLTNANKSGEYYI----- 202 (456)
T ss_pred EEEcC--CCCCceEEEEc-C-CeEEEEEECCCCChHHhhhhcCeEEEEEEEEEHHHHHHHHHhccCcccCCcEEH-----
Confidence 77764 56789988764 4 899999998752 346788999999999988655332221 1 234443
Q ss_pred cCCCCCcccccchhhhhhhhhcCCc-EEEEEcch--hHhhhccchhhhhccHHHHhhhccc--CC-cccccCCCceEecC
Q psy17795 315 NGKDTDFNHIQLEKEIIMPLAGSGK-AYVYQTSK--WWSQLKSAGSAIYANRHYLQLYKTR--HP-ERLQCSSQCKTIGD 388 (523)
Q Consensus 315 ~~~~~~~~~~~~~~dil~~li~~g~-v~~~~~~g--~w~dIgt~~dyl~an~~~l~~~~~~--~~-~~~~~~~~~~i~~~ 388 (523)
+++++.+++.+. +.++...+ +|.+++++++|..++..+..+.... .+ ..+...+++.++++
T Consensus 203 -------------td~i~~~~~~g~~v~~~~~~~~~~~~~I~tp~dl~~a~~~l~~~~~~~~~~~~~~i~~~~~~~i~~~ 269 (456)
T PRK14356 203 -------------TDLVGLAVAEGMNVLGVNCGEDPNLLGVNTPAELVRSEELLRARIVEKHLESGVLIHAPESVRIGPR 269 (456)
T ss_pred -------------HHHHHHHHHCCCeEEEEEcCCcCeEecCcCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEECCC
Confidence 789999887774 88888765 5699999999999887666442210 11 11111134566666
Q ss_pred cEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcC-CCCC------
Q psy17795 389 VYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEG-TPCD------ 461 (523)
Q Consensus 389 ~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~-~~~~------ 461 (523)
+.|++++.|.+++.|+++++||++|.|+++|.|.+++||++|.|+++|+|.+++||++|.||+++.|.+ +.++
T Consensus 270 ~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig 349 (456)
T PRK14356 270 ATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVG 349 (456)
T ss_pred cEECCCCEEeCCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEec
Confidence 777777777777777777777777777777777777777777777777777777776666666666542 1111
Q ss_pred -----------CC------CCCCceecCCCCeecCCCeec------CCcEEeCCCCEECCCcEE-------eCeEEcCCc
Q psy17795 462 -----------PN------PNKAFAKMDNPPLFNSNGKLN------PSITILGDGVTVPGELIV-------LNSIVLPYK 511 (523)
Q Consensus 462 -----------~~------~~~~~v~I~~~~~ig~~~~i~------~g~~iIG~~~~Ig~~~~i-------~~~~v~~~~ 511 (523)
.+ ..-+.+.|++++.||+++... ...++||+++.+|.++.+ .+++|++++
T Consensus 350 ~~~~i~~~~i~~~~~i~~~~~ig~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig~~~~i~~~~~ig~~~~i~~~~ 429 (456)
T PRK14356 350 NFVEMKKAVLGKGAKANHLTYLGDAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSNTALVAPVTIGDGALVGAGS 429 (456)
T ss_pred CCceeeeeEecCCcEecccccccCeEECCCCEECCCceeeccccccCCCCEECCCcEEcCCCEEeCCcEECCCCEEcCCC
Confidence 10 001123455555555553211 012556666666666654 466777888
Q ss_pred EeCCCCCCccc
Q psy17795 512 ELTRSFKNEIL 522 (523)
Q Consensus 512 ~i~~~~~~~~i 522 (523)
+|.+++|+..+
T Consensus 430 ~v~~~~~~~~~ 440 (456)
T PRK14356 430 VITKDVPDGSL 440 (456)
T ss_pred EEeccCCCCcE
Confidence 88888875543
No 22
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=4.1e-38 Score=336.57 Aligned_cols=377 Identities=20% Similarity=0.296 Sum_probs=252.5
Q ss_pred cceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeE
Q psy17795 92 CGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINI 171 (523)
Q Consensus 92 ~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i 171 (523)
|.++||||||| .|+||++ .+||||+|++|+|||+|+|++|.+. +++++++++++..+++++++.+ .+
T Consensus 1 m~~~avIlAaG--~g~Rl~~---~~pK~ll~i~Gkpli~~~l~~l~~~-gi~~iivvv~~~~~~i~~~~~~-------~~ 67 (458)
T PRK14354 1 MNRYAIILAAG--KGTRMKS---KLPKVLHKVCGKPMVEHVVDSVKKA-GIDKIVTVVGHGAEEVKEVLGD-------RS 67 (458)
T ss_pred CCceEEEEeCC--CCcccCC---CCChhhCEeCCccHHHHHHHHHHhC-CCCeEEEEeCCCHHHHHHHhcC-------Cc
Confidence 56789999999 9999986 7999999999999999999999986 9999999999988888888764 13
Q ss_pred EEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc----cc--hHH--HHHHHHhcCCcceEEE
Q psy17795 172 RYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE----IR--SDV--VILMHSLYSMAILVTV 241 (523)
Q Consensus 172 ~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~----i~--~D~--l~~~h~~~~~~~~~tv 241 (523)
.++.+.+++| ++++++ ++++...++. |++++ ++ .++ +++.|++.+ ++.++
T Consensus 68 ~~~~~~~~~g-----------------~~~al~~a~~~l~~~~d~-vlv~~~D~p~i~~~~l~~li~~~~~~~--~~~t~ 127 (458)
T PRK14354 68 EFALQEEQLG-----------------TGHAVMQAEEFLADKEGT-TLVICGDTPLITAETLKNLIDFHEEHK--AAATI 127 (458)
T ss_pred EEEEcCCCCC-----------------HHHHHHHHHHHhcccCCe-EEEEECCccccCHHHHHHHHHHHHhcC--CceEE
Confidence 3455555667 899999 6777532356 77776 22 233 777887666 77787
Q ss_pred EEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCC----cccceeeeeEEEeeHH-HHHHHHHhhccc-cccccccccccc
Q psy17795 242 MATEATRQQSVYYGCIVRKQQTSEISHYVEKPST----FVSTLVNCGVYLFSLD-IFQNIAAVFQSK-QDEFYNGNYMVN 315 (523)
Q Consensus 242 ~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~----~~~~l~~~Giyif~~~-il~~l~~~~~~~-~~e~~~~~~~~~ 315 (523)
++.+.. ++..||.+..|++ ++|.++.|||.. ....++++|+|+|+++ +++.+.+..... .++++
T Consensus 128 ~~~~~~--~~~~~g~v~~d~~-~~V~~~~ek~~~~~~~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~~------- 197 (458)
T PRK14354 128 LTAIAE--NPTGYGRIIRNEN-GEVEKIVEQKDATEEEKQIKEINTGTYCFDNKALFEALKKISNDNAQGEYY------- 197 (458)
T ss_pred EEEEcC--CCCCceEEEEcCC-CCEEEEEECCCCChHHhcCcEEEEEEEEEEHHHHHHHHHHhCccccCCcEe-------
Confidence 777653 4567998888876 899999998742 2356899999999987 556665533221 22332
Q ss_pred CCCCCcccccchhhhhhhhhcCC-cEEEEEcchhHh--hhccchhhhhccHHHHhhhccc--CCc-ccccCCCceEecCc
Q psy17795 316 GKDTDFNHIQLEKEIIMPLAGSG-KAYVYQTSKWWS--QLKSAGSAIYANRHYLQLYKTR--HPE-RLQCSSQCKTIGDV 389 (523)
Q Consensus 316 ~~~~~~~~~~~~~dil~~li~~g-~v~~~~~~g~w~--dIgt~~dyl~an~~~l~~~~~~--~~~-~~~~~~~~~i~~~~ 389 (523)
+ +|+++.+++.+ +++++..+++|. ++++++|+..++..+..+.... .+. .+.....+.|++++
T Consensus 198 ----------~-~d~~~~l~~~g~~v~~~~~~g~~~~i~i~~~~Dl~~a~~ll~~~~~~~~~~~~~~~i~~~~~~i~~~~ 266 (458)
T PRK14354 198 ----------L-TDVIEILKNEGEKVGAYQTEDFEESLGVNDRVALAEAEKVMRRRINEKHMVNGVTIIDPESTYIDADV 266 (458)
T ss_pred ----------H-HHHHHHHHHCCCeEEEEecCCcceEEccCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEECCCc
Confidence 2 68889888776 499999987765 6668888888876554332210 010 11111235677778
Q ss_pred EECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEE----------------CCCCEEe-ceEECCCCEECCC
Q psy17795 390 YIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASI----------------GNHSLVL-NSIVGRNSKVGNW 452 (523)
Q Consensus 390 ~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~I----------------g~~~~I~-~~iIg~~~~Ig~~ 452 (523)
.|++++.|++++.|++++.||++|.|++++.|.+++||++|.| |++|.|. +++||++|.|+++
T Consensus 267 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~ 346 (458)
T PRK14354 267 EIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTITNSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNF 346 (458)
T ss_pred EECCCCEEeCCeEEecceEECCCCEECCCcEEeccEECCCCEEEEEEEeCCEECCCcEECCceEecCCCEEeCCcEECCc
Confidence 8888888888887777778888888777777766655555544 4444444 4444455544444
Q ss_pred cEEcCCCCCCCC------CCCceecCCCCeecCCCeecC------CcEEeCCCCEECCCcEE-------eCeEEcCCcEe
Q psy17795 453 SRVEGTPCDPNP------NKAFAKMDNPPLFNSNGKLNP------SITILGDGVTVPGELIV-------LNSIVLPYKEL 513 (523)
Q Consensus 453 ~~i~~~~~~~~~------~~~~v~I~~~~~ig~~~~i~~------g~~iIG~~~~Ig~~~~i-------~~~~v~~~~~i 513 (523)
+.|.+..++.+. ..+.+.|++++.||.++.+.. ..++||+++.||.+++| .+++|++++.|
T Consensus 347 ~~i~~~~i~~~~~i~~~~~~~~~~ig~~~~ig~~~~~~~~~~~~~~~~~igd~~~ig~~s~i~~~~~ig~~~~v~~~~~v 426 (458)
T PRK14354 347 VEIKKSTIGEGTKVSHLTYIGDAEVGENVNIGCGTITVNYDGKNKFKTIIGDNAFIGCNSNLVAPVTVGDNAYIAAGSTI 426 (458)
T ss_pred eEEeeeEECCCCEecceeeecCcccCCceEEcCceeecccccccccCCEECCCcEEccCCEEeCCcEECCCCEECCCCEE
Confidence 444322211111 112345566666665544322 12556676666666655 45677788888
Q ss_pred CCCCCCccc
Q psy17795 514 TRSFKNEIL 522 (523)
Q Consensus 514 ~~~~~~~~i 522 (523)
.+++|+..+
T Consensus 427 ~~~~~~~~~ 435 (458)
T PRK14354 427 TKDVPEDAL 435 (458)
T ss_pred CCCCCCCCE
Confidence 888886543
No 23
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.5e-39 Score=307.76 Aligned_cols=228 Identities=20% Similarity=0.269 Sum_probs=201.4
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccC-ChHHHHHHHHhhhhccCeeEE
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYY-PSADLQKFVLDMVQEYKINIR 172 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~-~~~~i~~~l~~~~~~~~~~i~ 172 (523)
||+|||||| .||||+|+|...||+|+|+.+||||+|.|+.|..+ ||++|.||+++ ....+++++++ +++|+++++
T Consensus 1 mKgiILAgG--~GTRL~PlT~~~~KqLlpV~~KPmi~y~l~~L~~a-GI~dI~II~~~~~~~~~~~llGd-gs~~gv~it 76 (286)
T COG1209 1 MKGVILAGG--SGTRLRPLTRVVPKQLLPVYDKPMIYYPLETLMLA-GIRDILIVVGPEDKPTFKELLGD-GSDFGVDIT 76 (286)
T ss_pred CCcEEecCc--CccccccccccCCcccceecCcchhHhHHHHHHHc-CCceEEEEecCCchhhhhhhhcC-ccccCcceE
Confidence 789999999 99999999999999999999999999999999986 99999999887 77889999988 478999999
Q ss_pred EEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--cc-hHH--HHHHHHhcCCcceEEEEEEe
Q psy17795 173 YLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--IR-SDV--VILMHSLYSMAILVTVMATE 245 (523)
Q Consensus 173 ~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i~-~D~--l~~~h~~~~~~~~~tv~~~~ 245 (523)
|..|+++.| .|+|+. ++|+.+ ++.+|++. ++ .++ +++.+.+.. ...++++.+
T Consensus 77 Y~~Q~~p~G-----------------lA~Av~~a~~fv~~--~~f~l~LGDNi~~~~l~~~~~~~~~~~--~ga~i~~~~ 135 (286)
T COG1209 77 YAVQPEPDG-----------------LAHAVLIAEDFVGD--DDFVLYLGDNIFQDGLSELLEHFAEEG--SGATILLYE 135 (286)
T ss_pred EEecCCCCc-----------------HHHHHHHHHhhcCC--CceEEEecCceeccChHHHHHHHhccC--CCcEEEEEE
Confidence 999999999 999999 889873 44144444 32 345 555445555 678999999
Q ss_pred eCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCCCCccccc
Q psy17795 246 ATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQ 325 (523)
Q Consensus 246 ~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 325 (523)
++ +|++||++++|++ ++++.+.|||+.+.|+++-+|+|.|++++|+.++...++.++|+++
T Consensus 136 V~--dP~rfGV~e~d~~-~~v~~l~EKP~~P~SNlAvtGlY~~d~~Vf~~~~~ikPS~RGElEI---------------- 196 (286)
T COG1209 136 VD--DPSRYGVVEFDED-GKVIGLEEKPKEPKSNLAVTGLYFYDPSVFEAIKQIKPSARGELEI---------------- 196 (286)
T ss_pred cC--CcccceEEEEcCC-CcEEEeEECCCCCCCceeEEEEEEeChHHHHHHHcCCCCCCCceEe----------------
Confidence 95 7899999999987 8999999999999999999999999999999999988888999988
Q ss_pred chhhhhhhhhcCCc-EEEEEcchhHhhhccchhhhhccHHHHh
Q psy17795 326 LEKEIIMPLAGSGK-AYVYQTSKWWSQLKSAGSAIYANRHYLQ 367 (523)
Q Consensus 326 ~~~dil~~li~~g~-v~~~~~~g~w~dIgt~~dyl~an~~~l~ 367 (523)
+|+++.++++|. +......|+|.|.||++++++|++..+.
T Consensus 197 --Td~i~~~i~~G~~~~~~~~~G~WlDtGt~~slleA~~~i~~ 237 (286)
T COG1209 197 --TDAIDLYIEKGYLVVAILIRGWWLDTGTPESLLEANNFVRT 237 (286)
T ss_pred --hHHHHHHHHcCcEEEEEEccceEEecCChhhHHHHHHHHHH
Confidence 799999999998 6666778899999999999999998886
No 24
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2.9e-37 Score=329.07 Aligned_cols=368 Identities=17% Similarity=0.222 Sum_probs=246.5
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEE
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRY 173 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~ 173 (523)
|+||||||| .|+||++ .+||||+|++|+|||+|+|+++.+. + ++|+|++++..+.+.+++.+ + +.+
T Consensus 1 m~avIlA~G--~gtRl~~---~~pK~l~~v~gkpli~~~l~~l~~~-~-~~i~vv~~~~~~~i~~~~~~-----~--~~~ 66 (448)
T PRK14357 1 MRALVLAAG--KGTRMKS---KIPKVLHKISGKPMINWVIDTAKKV-A-QKVGVVLGHEAELVKKLLPE-----W--VKI 66 (448)
T ss_pred CeEEEECCC--CCccCCC---CCCceeeEECCeeHHHHHHHHHHhc-C-CcEEEEeCCCHHHHHHhccc-----c--cEE
Confidence 689999999 9999986 8999999999999999999999985 4 89999999988888888764 1 345
Q ss_pred EecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc----cch--HH--HHHHHHhcCCcceEEEEE
Q psy17795 174 LQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE----IRS--DV--VILMHSLYSMAILVTVMA 243 (523)
Q Consensus 174 ~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~----i~~--D~--l~~~h~~~~~~~~~tv~~ 243 (523)
+.+++++| ++++++ ++++.. .+. |++++ ++. |+ +++.|++.+ +++++++
T Consensus 67 ~~~~~~~g-----------------~~~ai~~a~~~l~~-~~~-vlv~~gD~p~i~~~~i~~l~~~~~~~~--~d~ti~~ 125 (448)
T PRK14357 67 FLQEEQLG-----------------TAHAVMCARDFIEP-GDD-LLILYGDVPLISENTLKRLIEEHNRKG--ADVTILV 125 (448)
T ss_pred EecCCCCC-----------------hHHHHHHHHHhcCc-CCe-EEEEeCCcccCCHHHHHHHHHHHHhcC--CeEEEEE
Confidence 55666777 999999 677752 356 88877 232 34 778887777 8889988
Q ss_pred EeeCCCCCcceeEEEEcCCCCcEEEEeecCCCc----ccceeeeeEEEeeHHHH-HHHHHhhccc-ccccccccccccCC
Q psy17795 244 TEATRQQSVYYGCIVRKQQTSEISHYVEKPSTF----VSTLVNCGVYLFSLDIF-QNIAAVFQSK-QDEFYNGNYMVNGK 317 (523)
Q Consensus 244 ~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~----~~~l~~~Giyif~~~il-~~l~~~~~~~-~~e~~~~~~~~~~~ 317 (523)
.+.. ++..||.+..| + +++ .+.|||... ..+++++|+|+|++++| +.+++..... ++++++
T Consensus 126 ~~~~--~~~~~g~v~~d-~-g~v-~~~e~~~~~~~~~~~~~~~~GiYv~~~~~l~~~~~~~~~~~~~~~~~~-------- 192 (448)
T PRK14357 126 ADLE--DPTGYGRIIRD-G-GKY-RIVEDKDAPEEEKKIKEINTGIYVFSGDFLLEVLPKIKNENAKGEYYL-------- 192 (448)
T ss_pred EEcC--CCCCcEEEEEc-C-CeE-EEEECCCCChHHhcCcEEEeEEEEEEHHHHHHHHHhhCcCCCCCeEEH--------
Confidence 8774 56789998877 4 788 888876432 13589999999999976 4455432221 234433
Q ss_pred CCCcccccchhhhhhhhhcCCcEEEEEcchhHhh--hccchhhhhccHHHHhhhcc-cC-Cc-ccccCCCceEecCcEEC
Q psy17795 318 DTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQ--LKSAGSAIYANRHYLQLYKT-RH-PE-RLQCSSQCKTIGDVYIH 392 (523)
Q Consensus 318 ~~~~~~~~~~~dil~~li~~g~v~~~~~~g~w~d--Igt~~dyl~an~~~l~~~~~-~~-~~-~~~~~~~~~i~~~~~i~ 392 (523)
+|+++.+. ++.+|...++|.. +++++++..+...+...... .. +. .+.....+.+++++.|+
T Consensus 193 ----------~d~i~~~~---~v~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig 259 (448)
T PRK14357 193 ----------TDAVNFAE---KVRVVKTEDLLEITGVNTRIQLAWLEKQLRMRILEELMENGVTILDPNTTYIHYDVEIG 259 (448)
T ss_pred ----------HHHHHhhh---heeEEecCCHHHEEccCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEEccceEEC
Confidence 58887773 3788888898654 55888877665554322110 00 10 11111134677777777
Q ss_pred CCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCC----------------EECCCCEEe-ceEECCCCEECCCcEE
Q psy17795 393 SSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGA----------------SIGNHSLVL-NSIVGRNSKVGNWSRV 455 (523)
Q Consensus 393 ~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~----------------~Ig~~~~I~-~~iIg~~~~Ig~~~~i 455 (523)
+++.|++++.|++++.||++|+|+++|.|.+|+||++| .|++++.|. +++||++|.||+++.+
T Consensus 260 ~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i 339 (448)
T PRK14357 260 MDTIIYPMTFIEGKTRIGEDCEIGPMTRIVDCEIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFVEI 339 (448)
T ss_pred CCcEEcCCcEEEeeeEECCCcEECCCceecccEECCCCEEeeeEEEEEEEeCCcEECCCcEECCcccccCCcEecCceee
Confidence 77777777777777777777777776666555555544 445555553 4666666666666655
Q ss_pred cCCCCCCCC------CCCceecCCCCeecCCCeecC------CcEEeCCCCEECCCcEE-------eCeEEcCCcEeCCC
Q psy17795 456 EGTPCDPNP------NKAFAKMDNPPLFNSNGKLNP------SITILGDGVTVPGELIV-------LNSIVLPYKELTRS 516 (523)
Q Consensus 456 ~~~~~~~~~------~~~~v~I~~~~~ig~~~~i~~------g~~iIG~~~~Ig~~~~i-------~~~~v~~~~~i~~~ 516 (523)
.++.++.+. ..+.+.||+++.||+++.+.. ..++||+++.||.+++| .++.|++++.|..+
T Consensus 340 ~~~~ig~~~~~~~~~~~~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~gv~Ig~~~~i~ag~~v~~~ 419 (448)
T PRK14357 340 KKSTIGENTKAQHLTYLGDATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGSNSSLVAPVRIGKGALIGAGSVITED 419 (448)
T ss_pred eccEEcCCcCccccccccCcEECCCcEECCCcccccccccccCCcEECCCCEECCCCEEeCCcEECCCCEEcCCCEECCc
Confidence 433222221 112456778888877654421 12667777777777655 45666777777777
Q ss_pred CCCccc
Q psy17795 517 FKNEIL 522 (523)
Q Consensus 517 ~~~~~i 522 (523)
+|+..+
T Consensus 420 v~~~~~ 425 (448)
T PRK14357 420 VPPYSL 425 (448)
T ss_pred CCCCcE
Confidence 775543
No 25
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.1e-36 Score=324.86 Aligned_cols=374 Identities=15% Similarity=0.258 Sum_probs=255.8
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEE
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRY 173 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~ 173 (523)
|.+|||||| +|+||++ .+||+|+|++|+|||+|+|++|.+. ++++++|++++..+.+.+++.+. + .+.+
T Consensus 2 ~~~iIlAaG--~gsR~~~---~~pK~ll~v~gkpli~~~l~~l~~~-g~~~iivvv~~~~~~i~~~~~~~----~-~i~~ 70 (450)
T PRK14360 2 LAVAILAAG--KGTRMKS---SLPKVLHPLGGKSLVERVLDSCEEL-KPDRRLVIVGHQAEEVEQSLAHL----P-GLEF 70 (450)
T ss_pred ceEEEEeCC--CCccCCC---CCChhcCEECChhHHHHHHHHHHhC-CCCeEEEEECCCHHHHHHHhccc----C-CeEE
Confidence 568999999 9999987 8899999999999999999999986 99999999999888888888652 1 3556
Q ss_pred EecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc----cch--HH--HHHHHHhcCCcceEEEEE
Q psy17795 174 LQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE----IRS--DV--VILMHSLYSMAILVTVMA 243 (523)
Q Consensus 174 ~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~----i~~--D~--l~~~h~~~~~~~~~tv~~ 243 (523)
+.+....| ++++++ .+++...+++ +++++ ++. ++ +++.|++.+ ++++++.
T Consensus 71 v~~~~~~G-----------------~~~sv~~~~~~l~~~~~~-vlV~~~D~P~i~~~~l~~ll~~~~~~~--~~~~~~~ 130 (450)
T PRK14360 71 VEQQPQLG-----------------TGHAVQQLLPVLKGFEGD-LLVLNGDVPLLRPETLEALLNTHRSSN--ADVTLLT 130 (450)
T ss_pred EEeCCcCC-----------------cHHHHHHHHHHhhccCCc-EEEEeCCccccCHHHHHHHHHHHHhcC--CcEEEEE
Confidence 66555566 889988 6666532356 77776 222 33 777787776 7777776
Q ss_pred EeeCCCCCcceeEEEEcCCCCcEEEEeecCC----CcccceeeeeEEEeeHHHHHHH-HHhhccc-ccccccccccccCC
Q psy17795 244 TEATRQQSVYYGCIVRKQQTSEISHYVEKPS----TFVSTLVNCGVYLFSLDIFQNI-AAVFQSK-QDEFYNGNYMVNGK 317 (523)
Q Consensus 244 ~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~----~~~~~l~~~Giyif~~~il~~l-~~~~~~~-~~e~~~~~~~~~~~ 317 (523)
.+.+ ++..||.+..|++ ++|.++.|||. ...++++++|+|+|+++.|..+ ++..... ..|+++
T Consensus 131 ~~~~--~~~~~g~~~~d~~-g~v~~~~ek~~~~~~~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~~-------- 199 (450)
T PRK14360 131 ARLP--NPKGYGRVFCDGN-NLVEQIVEDRDCTPAQRQNNRINAGIYCFNWPALAEVLPKLSSNNDQKEYYL-------- 199 (450)
T ss_pred EecC--CCCCccEEEECCC-CCEEEEEECCCCChhHhcCcEEEEEEEEEEHHHHHHHHhhccccccCCceeH--------
Confidence 6653 5667999988876 89999999975 2356799999999999877554 3332221 234443
Q ss_pred CCCcccccchhhhhhhhhcCCcEEEEEcchhH--hhhccchhhhhccHHHHhhhcc--cCCcccccCCC-ceEecCcEEC
Q psy17795 318 DTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWW--SQLKSAGSAIYANRHYLQLYKT--RHPERLQCSSQ-CKTIGDVYIH 392 (523)
Q Consensus 318 ~~~~~~~~~~~dil~~li~~g~v~~~~~~g~w--~dIgt~~dyl~an~~~l~~~~~--~~~~~~~~~~~-~~i~~~~~i~ 392 (523)
+|+++.+.+ +..+...++| ..+++++++..+...+...... ..+....-++. ..+++++.++
T Consensus 200 ----------td~i~~~~~---~~~~~v~~~~~~~~i~~~~dl~~~~~~l~~~~~~~~~d~~~~~i~~~~~~i~~~~~ig 266 (450)
T PRK14360 200 ----------TDTVSLLDP---VMAVEVEDYQEINGINDRKQLAQCEEILQNRIKEKWMLAGVTFIDPASCTISETVELG 266 (450)
T ss_pred ----------HHHHHHHhh---ceEEecCCHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCcEEecCCeEEEeCCEEEC
Confidence 677877743 4556666665 4588999988877765543221 11111111123 2466666677
Q ss_pred CCCEECCCCEECCCcEECCCCEECCCCEEee----------------eEECCCCEECCCCEEe-ceEECCCCEECCCcEE
Q psy17795 393 SSASVHPTAIVGPNVSIDDGAVIGPGVRIKE----------------SIILQGASIGNHSLVL-NSIVGRNSKVGNWSRV 455 (523)
Q Consensus 393 ~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~----------------s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i 455 (523)
+++.|++++.|+++++||++|.|++++.|.+ ++||++|.|+++|+|. +++||++|.||+++.|
T Consensus 267 ~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i 346 (450)
T PRK14360 267 PDVIIEPQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEI 346 (450)
T ss_pred CCCEECCCCEEeCCcEECCCCEECCCcEEEEEEEcCCCEEeeeEEeeccccCCcEECCCCEECCCCEEeCceEECCCEEE
Confidence 7777766666666666666666666666553 5566677777777776 6888888888888877
Q ss_pred cCCCCCCCC------CCCceecCCCCeecCCCeecC------CcEEeCCCCEECCCcEE-------eCeEEcCCcEeCCC
Q psy17795 456 EGTPCDPNP------NKAFAKMDNPPLFNSNGKLNP------SITILGDGVTVPGELIV-------LNSIVLPYKELTRS 516 (523)
Q Consensus 456 ~~~~~~~~~------~~~~v~I~~~~~ig~~~~i~~------g~~iIG~~~~Ig~~~~i-------~~~~v~~~~~i~~~ 516 (523)
.++.++.+. ..+.+.|+++|.||.++.+.. ..++||++|.||++++| .+++|++++.|+.+
T Consensus 347 ~~~~i~~~~~i~~~~~~~~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~~i~~~~~ig~~~~v~~~~~v~~~ 426 (450)
T PRK14360 347 KKSQLGEGSKVNHLSYIGDATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGANSVLVAPITLGEDVTVAAGSTITKD 426 (450)
T ss_pred eccccCCCcEeccceecCCceecCCcEECccceeccccccccCCcEeCCCeEeCCCCEEeCCcEECCCCEECCCCEECcc
Confidence 654443321 123456788888887765432 12566777777777655 35667777778888
Q ss_pred CCCccc
Q psy17795 517 FKNEIL 522 (523)
Q Consensus 517 ~~~~~i 522 (523)
+|+..+
T Consensus 427 ~~~~~~ 432 (450)
T PRK14360 427 VPDNSL 432 (450)
T ss_pred CCCCCE
Confidence 876544
No 26
>KOG1461|consensus
Probab=100.00 E-value=5.8e-36 Score=308.93 Aligned_cols=358 Identities=20% Similarity=0.284 Sum_probs=271.9
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccC----
Q psy17795 93 GWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYK---- 168 (523)
Q Consensus 93 ~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~---- 168 (523)
..+||+||-. .-+||+|+|...|+.|||+.+.|||+|+|++|.+. |+++++|++.-+..++.+|+.+ ++|.
T Consensus 24 rLqAIllaDs--f~trF~Plt~~~p~~LLPlaNVpmIdYtL~~L~~a-gV~eVfvfc~~~~~qi~e~i~~--sew~~~~~ 98 (673)
T KOG1461|consen 24 RLQAILLADS--FETRFRPLTLEKPRVLLPLANVPMIDYTLEWLERA-GVEEVFVFCSAHAAQIIEYIEK--SEWYLPMS 98 (673)
T ss_pred ceEEEEEecc--chhcccccccCCCceEeeecCchHHHHHHHHHHhc-CceEEEEEecccHHHHHHHHhh--cccccccc
Confidence 3589999999 99999999999999999999999999999999996 9999999998888999999998 3443
Q ss_pred eeEEEEecccccchhhhhcccccccccCCCchhHHH-Hh--hcccCCcceEEEEc--cc--hHH--HHHHHHhcCC---c
Q psy17795 169 INIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY-RN--SLHWVQEAVYFTLE--IR--SDV--VILMHSLYSM---A 236 (523)
Q Consensus 169 ~~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~-~~--~i~~~~d~~~Lvl~--i~--~D~--l~~~h~~~~~---~ 236 (523)
..+..+-..+... .++++| .+ .+. .++ |++++ ++ +++ +++.|+.++. +
T Consensus 99 ~~v~ti~s~~~~S-----------------~GDamR~id~k~li--tgD-FiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~ 158 (673)
T KOG1461|consen 99 FIVVTICSGESRS-----------------VGDAMRDIDEKQLI--TGD-FILVSGDTVSNMPLRNVLEEHRKRRKEDKD 158 (673)
T ss_pred ceEEEEcCCCcCc-----------------HHHHHHHHHhccee--ecc-eEEEeCCeeecCchHHHHHHHHHHhhhCcc
Confidence 2333333322222 788988 22 222 245 77777 44 455 8888864321 3
Q ss_pred ceEEEEEEeeCCCCCcceeEEEEcCCCCcEEEEee----c-----CC---------CcccceeeeeEEEeeHHHHHHHHH
Q psy17795 237 ILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVE----K-----PS---------TFVSTLVNCGVYLFSLDIFQNIAA 298 (523)
Q Consensus 237 ~~~tv~~~~~~~~~~~~~g~v~~d~~~~~V~~~~e----k-----p~---------~~~~~l~~~Giyif~~~il~~l~~ 298 (523)
+.|||+..+........--.+.+|..|.++++|.+ + |. ..+.++.+++|.+|+++++.++.+
T Consensus 159 ~iMTmv~k~~st~~~~~~~~~avd~~T~~ll~yq~~~~~~~~~~l~~sl~d~~~~v~vr~DL~dc~IdIcS~~V~sLF~d 238 (673)
T KOG1461|consen 159 AIMTMVFKESSTRETTEQVVIAVDSRTSRLLHYQKCVREKHDIQLDLSLFDSNDEVEVRNDLLDCQIDICSPEVLSLFTD 238 (673)
T ss_pred ceEEEEEeccccccCCcceEEEEcCCcceEEeehhhcccccccccCHHHhcCCCcEEEEccCCCceeeEecHhHHHHhhh
Confidence 67888887653111122235667888899999975 2 10 246889999999999999999999
Q ss_pred hhcccccccccccccccCCCCCcccccchhhhhhhhhcCCcEEEEEcch--hHhhhccchhhhhccHHHHhhhcccCCcc
Q psy17795 299 VFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSK--WWSQLKSAGSAIYANRHYLQLYKTRHPER 376 (523)
Q Consensus 299 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~dil~~li~~g~v~~~~~~g--~w~dIgt~~dyl~an~~~l~~~~~~~~~~ 376 (523)
+|+.. ...+|...+|-.-+-..+++++..+. |...+...+.|-..+++++++|. +|..
T Consensus 239 NFDyq------------------~r~DfV~GvL~~dilg~kI~~~~~~~~~yA~rv~n~~syd~vSkDiI~RW~--YP~V 298 (673)
T KOG1461|consen 239 NFDYQ------------------TRDDFVRGVLVDDILGYKIHVHVLSSIDYAARVENLRSYDLVSKDIIQRWT--YPLV 298 (673)
T ss_pred cccce------------------ehhhhhhhhhhhhhcCCeEEEEEcChhhhhhhhcccHHHHHHHHHHHHhhc--cccc
Confidence 87643 12233344443322234588887765 88899999999999999999875 3322
Q ss_pred cccC-----CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECC
Q psy17795 377 LQCS-----SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGN 451 (523)
Q Consensus 377 ~~~~-----~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~ 451 (523)
+... +-..-.-+.+-++.+.+.+++.++.++.||.++.||.++.|.+|+||.||.||.+++|.++.||++|+||+
T Consensus 299 pd~~~~~~q~~~~~r~~IYk~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~v~Igd 378 (673)
T KOG1461|consen 299 PDINFSGNQTFSLERRNIYKSPDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNNVTIGD 378 (673)
T ss_pred ccccCCCCceeeecccccccCccceehhhccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecCcEECC
Confidence 2211 11233356777889999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-eCeEE
Q psy17795 452 WSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV-LNSIV 507 (523)
Q Consensus 452 ~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-~~~~v 507 (523)
||.|.. +.|++++.|++++.+.+| +|||.++++|++-++ .+++|
T Consensus 379 nc~I~~-----------aii~d~v~i~~~~~l~~g-~vl~~~VVv~~~~~l~~ns~~ 423 (673)
T KOG1461|consen 379 NCRIDH-----------AIICDDVKIGEGAILKPG-SVLGFGVVVGRNFVLPKNSKV 423 (673)
T ss_pred CceEee-----------eEeecCcEeCCCcccCCC-cEEeeeeEeCCCccccccccc
Confidence 999975 577888888888888888 788888888888777 55554
No 27
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=100.00 E-value=3.9e-35 Score=293.80 Aligned_cols=230 Identities=17% Similarity=0.180 Sum_probs=188.0
Q ss_pred ccceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhh-----
Q psy17795 91 SCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQ----- 165 (523)
Q Consensus 91 ~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~----- 165 (523)
|..|+||||||| +||||+|+|..+||||+||+|+|||+|+|+.+.++ |+++|+|+++|..+++.+|+.....
T Consensus 1 ~~~mkavILAaG--~GTRL~PlT~~~PKpLvpV~gkPiI~~vl~~l~~~-Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~ 77 (297)
T TIGR01105 1 MTNLKAVIPVAG--LGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAA-GIKEIVLVTHASKNAVENHFDTSYELESLL 77 (297)
T ss_pred CCceEEEEECCC--CCcccCcccCCCCceeeEECCEEHHHHHHHHHHHC-CCCEEEEEecCChHHHHHHHhchHHHHHHH
Confidence 446899999999 99999999999999999999999999999999986 9999999999999999999964210
Q ss_pred ----------------ccCeeEEEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--cch--
Q psy17795 166 ----------------EYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--IRS-- 223 (523)
Q Consensus 166 ----------------~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i~~-- 223 (523)
.+++++.++.|++++| ||+|++ ++++.+ ++ |+|++ .++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~lG-----------------tg~Av~~a~~~l~~--~~-flvv~gD~l~~~ 137 (297)
T TIGR01105 78 EQRVKRQLLAEVQSICPPGVTIMNVRQAQPLG-----------------LGHSILCARPVVGD--NP-FVVVLPDIIIDD 137 (297)
T ss_pred HHhcchhhhhhhhhcCCCCceEEEeeCCCcCc-----------------hHHHHHHHHHHhCC--CC-EEEEECCeeccc
Confidence 2467788999989999 999999 778862 55 77776 333
Q ss_pred --------HH--HHHHHHhcCCcceEEEEEEeeCCCCCcceeEEEE----cCCCCc---EEEEeecCCCc---ccceeee
Q psy17795 224 --------DV--VILMHSLYSMAILVTVMATEATRQQSVYYGCIVR----KQQTSE---ISHYVEKPSTF---VSTLVNC 283 (523)
Q Consensus 224 --------D~--l~~~h~~~~~~~~~tv~~~~~~~~~~~~~g~v~~----d~~~~~---V~~~~ekp~~~---~~~l~~~ 283 (523)
|+ ++++|.+.+ +.+ +++.+++ +++++||++.. |++ ++ |.++.|||..+ .++++++
T Consensus 138 ~~~~~~~~~l~~li~~~~~~~--~~~-~~~~~~~-~~~~~yGvv~~~~~~d~~-g~v~~I~~~~EKP~~~~~~~s~~~~~ 212 (297)
T TIGR01105 138 ATADPLRYNLAAMIARFNETG--RSQ-VLAKRMP-GDLSEYSVIQTKEPLDRE-GKVSRIVEFIEKPDQPQTLDSDLMAV 212 (297)
T ss_pred cccccchhHHHHHHHHHHHhC--CcE-EEEEEcC-CCCccceEEEecccccCC-CCeeeEeEEEECCCCcccCCcCEEEE
Confidence 45 788887665 555 4444443 35789999988 334 54 58999999654 4789999
Q ss_pred eEEEeeHHHHHHHHHhhcccccccccccccccCCCCCcccccchhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhccH
Q psy17795 284 GVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANR 363 (523)
Q Consensus 284 Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~an~ 363 (523)
|+|+|++++|+.+........+|+++ +|+++.++++++++++..+|+|.|+|+|++|++++.
T Consensus 213 GiYi~~~~i~~~l~~~~~~~~ge~~l------------------td~i~~l~~~~~v~~~~~~g~w~DiG~p~~~~~a~~ 274 (297)
T TIGR01105 213 GRYVLSADIWAELERTEPGAWGRIQL------------------TDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFV 274 (297)
T ss_pred EEEEECHHHHHHHhcCCCCCCCeeeH------------------HHHHHHHHhcCCEEEEEeccEEECCCCHHHHHHHHH
Confidence 99999999999887644333455554 699999999999999999999999999999999988
Q ss_pred HHH
Q psy17795 364 HYL 366 (523)
Q Consensus 364 ~~l 366 (523)
.+.
T Consensus 275 ~~~ 277 (297)
T TIGR01105 275 KYG 277 (297)
T ss_pred HHH
Confidence 763
No 28
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=100.00 E-value=1.1e-34 Score=286.57 Aligned_cols=246 Identities=50% Similarity=0.875 Sum_probs=200.8
Q ss_pred EEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEEEe
Q psy17795 96 TNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRYLQ 175 (523)
Q Consensus 96 ~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~ 175 (523)
|||||||.|+|+||+|+|..+||||+||+|+|||+|+|+++.+.+|+++|+|++++..+++.+|+.+..+.+++.+.++.
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv~g~plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~i~~~~ 80 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQQEFNVPIRYLQ 80 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeECCeeHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhcccccCceEEEec
Confidence 58999985569999999999999999999999999999999983499999999999999999999874334677787777
Q ss_pred cccccchhhhhcccccccccCCCchhHHH--Hhhcc-cCCcceEEEEc--cc--hHH--HHHHHHhcCCcceEEEEEEee
Q psy17795 176 EFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLH-WVQEAVYFTLE--IR--SDV--VILMHSLYSMAILVTVMATEA 246 (523)
Q Consensus 176 ~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~-~~~d~~~Lvl~--i~--~D~--l~~~h~~~~~~~~~tv~~~~~ 246 (523)
+.+++| |+++++ ++++. ..+++ |||++ ++ .|+ ++++|++.+ +++|+++.++
T Consensus 81 ~~~~~G-----------------t~~al~~a~~~l~~~~~~~-~lv~~gD~~~~~dl~~~~~~h~~~~--~~~tl~~~~~ 140 (257)
T cd06428 81 EYKPLG-----------------TAGGLYHFRDQILAGNPSA-FFVLNADVCCDFPLQELLEFHKKHG--ASGTILGTEA 140 (257)
T ss_pred CCccCC-----------------cHHHHHHHHHHhhccCCCC-EEEEcCCeecCCCHHHHHHHHHHcC--CCEEEEEEEc
Confidence 777788 999998 77775 22467 88888 43 345 889998887 8899998877
Q ss_pred CCCCCcceeEEEEc-CCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCCCCccccc
Q psy17795 247 TRQQSVYYGCIVRK-QQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQ 325 (523)
Q Consensus 247 ~~~~~~~~g~v~~d-~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 325 (523)
+.+++..||++..| ++ ++|.+|.|||....++++++|+|+|++++|+.+.+....+.+|++....+. ++...+..+
T Consensus 141 ~~~~~~~yg~v~~d~~~-g~v~~~~Ekp~~~~~~~~~~Giyi~~~~~~~~i~~~~~~~~~e~~~~~~~~--~~~~~~~~~ 217 (257)
T cd06428 141 SREQASNYGCIVEDPST-GEVLHYVEKPETFVSDLINCGVYLFSPEIFDTIKKAFQSRQQEAQLGDDNN--REGRAEVIR 217 (257)
T ss_pred cccccccccEEEEeCCC-CeEEEEEeCCCCcccceEEEEEEEECHHHHHHHhhhccccccccccccccc--cccccceee
Confidence 54567899999888 44 899999999988788999999999999999988775555455655321111 111123456
Q ss_pred chhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhccHH
Q psy17795 326 LEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANRH 364 (523)
Q Consensus 326 ~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~an~~ 364 (523)
+.+|+++.+++++++++|.++|||.|++++++|+++|+.
T Consensus 218 ~~~d~~~~l~~~~~v~~~~~~g~w~dig~~~~~~~a~~~ 256 (257)
T cd06428 218 LEQDVLTPLAGSGKLYVYKTDDFWSQIKTAGSAIYANRL 256 (257)
T ss_pred ehhhhhhHHhccCCEEEecCCCeeecCCCHHHHHhHhhc
Confidence 778999999999999999999999999999999999875
No 29
>KOG1462|consensus
Probab=100.00 E-value=6.1e-35 Score=286.03 Aligned_cols=351 Identities=20% Similarity=0.256 Sum_probs=220.2
Q ss_pred ccceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccC-ChHHHHHHHHhhhhccCe
Q psy17795 91 SCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYY-PSADLQKFVLDMVQEYKI 169 (523)
Q Consensus 91 ~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~-~~~~i~~~l~~~~~~~~~ 169 (523)
|++|++|++|+| .||||.-++...||+||||+|+|||+|+|++|.+. |+++|+|++.. ....|+.++.+. ....+
T Consensus 7 ~~efqavV~a~~--ggt~~p~~~~~~pKaLLPIgn~PMi~YpL~~L~~~-gfteiiVv~~e~e~~~i~~al~~~-~~l~~ 82 (433)
T KOG1462|consen 7 MSEFQAVVLAGG--GGTRMPEVTSRLPKALLPIGNKPMILYPLNSLEQA-GFTEIIVVVNEDEKLDIESALGSN-IDLKK 82 (433)
T ss_pred hHHhhhheeecC--CceechhhhhhcchhhcccCCcceeeeehhHHHhc-CCeEEEEEecHHHHHHHHHHHhcC-Ccccc
Confidence 578899999999 99999999999999999999999999999999997 99999999987 566788888653 11222
Q ss_pred e---EEEEec-ccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--cchHH----HHHHHHhcCCcc
Q psy17795 170 N---IRYLQE-FWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--IRSDV----VILMHSLYSMAI 237 (523)
Q Consensus 170 ~---i~~~~~-~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i~~D~----l~~~h~~~~~~~ 237 (523)
+ +.+-.. .+.+| ||++|+ .+.+. .++ |||++ ++.|. +++.++..+ +
T Consensus 83 ~~~~v~ip~~~~~d~g-----------------tadsLr~Iy~kik--S~D-flvlsCD~Vtdv~l~~lvd~FR~~d--~ 140 (433)
T KOG1462|consen 83 RPDYVEIPTDDNSDFG-----------------TADSLRYIYSKIK--SED-FLVLSCDFVTDVPLQPLVDKFRATD--A 140 (433)
T ss_pred cccEEEeecccccccC-----------------CHHHHhhhhhhhc--cCC-EEEEecccccCCCcHHHHHHHhccC--h
Confidence 2 222211 12456 999999 55565 356 99988 44444 778777665 4
Q ss_pred eEEEEEEeeCC---------CCCcceeEEEEcCCCCcEEEEeec-----------------CC-CcccceeeeeEEEeeH
Q psy17795 238 LVTVMATEATR---------QQSVYYGCIVRKQQTSEISHYVEK-----------------PS-TFVSTLVNCGVYLFSL 290 (523)
Q Consensus 238 ~~tv~~~~~~~---------~~~~~~g~v~~d~~~~~V~~~~ek-----------------p~-~~~~~l~~~Giyif~~ 290 (523)
.+.++...... .....+.++-+++.|+|+.-.... |. ...++|.++++|+|+.
T Consensus 141 slamli~~~~s~~~~pgqk~k~k~~~d~igi~e~t~rl~y~~~~~d~~~~l~i~~slL~~~prltl~t~L~dahiY~~k~ 220 (433)
T KOG1462|consen 141 SLAMLIGNALSEVPIPGQKGKKKQARDVIGINEDTERLAYSSDSADEEEPLVIRKSLLWNHPRLTLTTKLVDAHIYVFKH 220 (433)
T ss_pred hHhHHhccccccccccCcccccccccceeeeccccceeEEeecCCcCCCceehhhhhhhcCCceEEeccccceeeeeeHH
Confidence 44433332210 011223444556665664432111 11 2357899999999999
Q ss_pred HHHHHHHHhhc--ccccccc--c-cc-ccccCCCCCcccccchh--hhhhhhh-----cCCcEEEEEc--chhHhhhccc
Q psy17795 291 DIFQNIAAVFQ--SKQDEFY--N-GN-YMVNGKDTDFNHIQLEK--EIIMPLA-----GSGKAYVYQT--SKWWSQLKSA 355 (523)
Q Consensus 291 ~il~~l~~~~~--~~~~e~~--~-~~-~~~~~~~~~~~~~~~~~--dil~~li-----~~g~v~~~~~--~g~w~dIgt~ 355 (523)
++++.|.+... +-+++|. + .. ++....+.. ...++.. .+-+... +.-++++|.. ..-+...+|.
T Consensus 221 ~v~d~l~~~~sisSfk~~f~P~lvkkQ~q~~~~~~~-~~~~~l~t~~~~~~d~~~~~~d~ik~y~~~~p~e~~~~raNtL 299 (433)
T KOG1462|consen 221 WVIDLLSEKESISSFKADFLPYLVKKQFQKNPPLKK-NETSILPTPNLNNPDGIHSPDDRIKCYAYILPTESLFVRANTL 299 (433)
T ss_pred HHHHHHhcCCcceeecccccchhhhhhhhcCCCccc-ccccccCCccccCcccccCcccceeeeEEEccCccceEEecch
Confidence 99999975321 1133331 1 00 000000000 0000000 0000000 1122455543 3345578889
Q ss_pred hhhhhccH--HHHhhhcccCCcccccCCCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEEC
Q psy17795 356 GSAIYANR--HYLQLYKTRHPERLQCSSQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIG 433 (523)
Q Consensus 356 ~dyl~an~--~~l~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig 433 (523)
..|+++|+ .+........+ +...+ ...+.++..++|+++|.|++++.|..|+||.+|.||
T Consensus 300 ~~y~eiN~~k~~~~l~~e~~~----------~k~~~--------~~~~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig 361 (433)
T KOG1462|consen 300 LSYMEINRDKKLKKLCSEAKF----------VKNYV--------KKVALVGADSIVGDNTQIGENSNIKRSVIGSNCDIG 361 (433)
T ss_pred HHHHhhhHHHHHHHhcccccc----------ccchh--------hheeccchhhccCCCceecccceeeeeeecCCcccc
Confidence 99999995 23221111111 00000 011445567777788888888888888888888888
Q ss_pred CCCEEeceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCCcEe
Q psy17795 434 NHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKEL 513 (523)
Q Consensus 434 ~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i 513 (523)
+.+.|.+|+|++|++||+||.|.+ ||||.|+.||+|+.+.||.|+|+..|
T Consensus 362 ~~~~v~nSilm~nV~vg~G~~Ien------------------------------sIIg~gA~Ig~gs~L~nC~Ig~~yvV 411 (433)
T KOG1462|consen 362 ERVKVANSILMDNVVVGDGVNIEN------------------------------SIIGMGAQIGSGSKLKNCIIGPGYVV 411 (433)
T ss_pred CCcEEEeeEeecCcEecCCcceec------------------------------ceecccceecCCCeeeeeEecCCcEE
Confidence 888888888888888888888877 77788888888888888888888888
Q ss_pred CCC
Q psy17795 514 TRS 516 (523)
Q Consensus 514 ~~~ 516 (523)
...
T Consensus 412 eak 414 (433)
T KOG1462|consen 412 EAK 414 (433)
T ss_pred ccc
Confidence 743
No 30
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=100.00 E-value=5e-34 Score=285.09 Aligned_cols=229 Identities=18% Similarity=0.215 Sum_probs=192.3
Q ss_pred cceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEcc-CChHHHHHHHHhhhhccCee
Q psy17795 92 CGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGY-YPSADLQKFVLDMVQEYKIN 170 (523)
Q Consensus 92 ~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~-~~~~~i~~~l~~~~~~~~~~ 170 (523)
-.|+||||||| .||||+|+|..+||||+||+|||||+|+|+.|..+ |+++|+|++. +..+.+++|+++. +.|+++
T Consensus 2 ~~~kaIILAgG--~GtRL~PlT~~~pK~Llpv~gkPmI~~~l~~l~~a-Gi~~I~ii~~~~~~~~~~~~l~~g-~~~g~~ 77 (292)
T PRK15480 2 KTRKGIILAGG--SGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLA-GIRDILIISTPQDTPRFQQLLGDG-SQWGLN 77 (292)
T ss_pred CceEEEEECCC--cccccCcccCCCCceEeEECCEEHHHHHHHHHHHC-CCCEEEEEecCCchHHHHHHHcCc-cccCce
Confidence 35899999999 99999999999999999999999999999999986 9999997765 4667899999873 568999
Q ss_pred EEEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--cc--hHH--HHHHHHhcCCcceEEEE
Q psy17795 171 IRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--IR--SDV--VILMHSLYSMAILVTVM 242 (523)
Q Consensus 171 i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i~--~D~--l~~~h~~~~~~~~~tv~ 242 (523)
+.|+.|++++| +|+|+. ++++.+ ++++++++ ++ .|+ +++.|.+.+ +++|++
T Consensus 78 i~y~~q~~~~G-----------------ta~Al~~a~~~i~~--~~~~lv~gD~i~~~~~l~~ll~~~~~~~--~~~tv~ 136 (292)
T PRK15480 78 LQYKVQPSPDG-----------------LAQAFIIGEEFIGG--DDCALVLGDNIFYGHDLPKLMEAAVNKE--SGATVF 136 (292)
T ss_pred eEEEECCCCCC-----------------HHHHHHHHHHHhCC--CCEEEEECCeeeeccCHHHHHHHHHhCC--CCeEEE
Confidence 99999988999 999998 778863 34145554 33 355 788887776 788888
Q ss_pred EEeeCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCCCCcc
Q psy17795 243 ATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFN 322 (523)
Q Consensus 243 ~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~~~~ 322 (523)
+.+++ ++++||++..|++ ++|.+|.|||..+.++++++|+|+|++++++.+++..++.++|+++
T Consensus 137 ~~~v~--~p~~yGvv~~d~~-g~v~~i~EKP~~p~s~~a~~GiY~~~~~v~~~~~~~~~~~~ge~~i------------- 200 (292)
T PRK15480 137 AYHVN--DPERYGVVEFDQN-GTAISLEEKPLQPKSNYAVTGLYFYDNDVVEMAKNLKPSARGELEI------------- 200 (292)
T ss_pred EEEcC--CcccCcEEEECCC-CcEEEEEECCCCCCCCEEEEEEEEEChHHHHHHhhcCCCCCCeeEh-------------
Confidence 88774 6789999999976 8999999999888899999999999999999887755544566665
Q ss_pred cccchhhhhhhhhcCCcEE-EEEcchh-HhhhccchhhhhccHHHH
Q psy17795 323 HIQLEKEIIMPLAGSGKAY-VYQTSKW-WSQLKSAGSAIYANRHYL 366 (523)
Q Consensus 323 ~~~~~~dil~~li~~g~v~-~~~~~g~-w~dIgt~~dyl~an~~~l 366 (523)
+|+++.++++|++. .+..+++ |.|+||+++|++|++.+.
T Consensus 201 -----td~~~~~l~~g~~~~~~~~~g~~W~DiGt~~~l~~a~~~~~ 241 (292)
T PRK15480 201 -----TDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIA 241 (292)
T ss_pred -----HHHHHHHHhcCCeEEEEecCCcEEECCCCHHHHHHHHHHHH
Confidence 79999999989854 4466784 999999999999998775
No 31
>PRK10122 GalU regulator GalF; Provisional
Probab=100.00 E-value=1.9e-33 Score=282.27 Aligned_cols=229 Identities=17% Similarity=0.187 Sum_probs=187.4
Q ss_pred ccceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhh------
Q psy17795 91 SCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMV------ 164 (523)
Q Consensus 91 ~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~------ 164 (523)
|..|+||||||| +||||+|+|..+||||+||+|||||+|+|+++.++ |+++|+|++++..+.+.+|+....
T Consensus 1 ~~~mkavIlAaG--~GtRl~PlT~~~PK~llpi~gkpiI~~~l~~l~~~-Gi~~i~iv~~~~~~~i~~~~~~~~~l~~~~ 77 (297)
T PRK10122 1 MTNLKAVIPVAG--LGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAA-GIKEIVLVTHASKNAVENHFDTSYELESLL 77 (297)
T ss_pred CCceEEEEECCc--CCcccCcccCCCCceeeEECCEEHHHHHHHHHHHC-CCCEEEEEcCCChHHHHHHHhcchhHHHHH
Confidence 447899999999 99999999999999999999999999999999996 999999999999999999996411
Q ss_pred ---------------hccCeeEEEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--cch--
Q psy17795 165 ---------------QEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--IRS-- 223 (523)
Q Consensus 165 ---------------~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i~~-- 223 (523)
..+++++.++.|++++| ||+|++ ++++. +++ |+|++ .++
T Consensus 78 ~~~~k~~~l~~~~~~~~~~~~i~~~~q~~~lG-----------------tg~al~~a~~~l~--~~~-fvvi~gD~l~~~ 137 (297)
T PRK10122 78 EQRVKRQLLAEVQSICPPGVTIMNVRQGQPLG-----------------LGHSILCARPAIG--DNP-FVVVLPDVVIDD 137 (297)
T ss_pred hhcchhhhHHhhhhccCCCceEEEeecCCcCc-----------------hHHHHHHHHHHcC--CCC-EEEEECCeeccC
Confidence 01356788898988999 999999 78885 245 66666 333
Q ss_pred --------HH--HHHHHHhcCCcceEEEEEEeeCCCCCcceeEEEEc----CCCC---cEEEEeecCCCc---ccceeee
Q psy17795 224 --------DV--VILMHSLYSMAILVTVMATEATRQQSVYYGCIVRK----QQTS---EISHYVEKPSTF---VSTLVNC 283 (523)
Q Consensus 224 --------D~--l~~~h~~~~~~~~~tv~~~~~~~~~~~~~g~v~~d----~~~~---~V~~~~ekp~~~---~~~l~~~ 283 (523)
|+ ++++|.+.+ ++++ ++.... +++.+||++..| ++ + +|.+|.|||..+ .++++++
T Consensus 138 ~~~~~~~~dl~~li~~h~~~~--~~~~-~~~~~~-~~~~~yGvv~~d~~~~~~-g~v~~I~~~~EKp~~~~~~~s~~~~~ 212 (297)
T PRK10122 138 ASADPLRYNLAAMIARFNETG--RSQV-LAKRMP-GDLSEYSVIQTKEPLDRE-GKVSRIVEFIEKPDQPQTLDSDLMAV 212 (297)
T ss_pred ccccccchhHHHHHHHHHHhC--CcEE-EEEECC-CCCCCceEEEecCcccCC-CCeeeEEEEEECCCCcccCCccEEEE
Confidence 56 888898776 6644 444443 367899999986 34 5 789999999754 3789999
Q ss_pred eEEEeeHHHHHHHHHhhcccccccccccccccCCCCCcccccchhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhccH
Q psy17795 284 GVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANR 363 (523)
Q Consensus 284 Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~an~ 363 (523)
|+|+|++++|+.+.+......+|+++ +|+++.+++++++.+|..+|+|.|+|+|++|++++.
T Consensus 213 GiYi~~~~i~~~l~~~~~~~~~e~~l------------------td~i~~l~~~~~v~~~~~~G~w~DiG~p~~~~~a~~ 274 (297)
T PRK10122 213 GRYVLSADIWPELERTEPGAWGRIQL------------------TDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFV 274 (297)
T ss_pred EEEEECHHHHHHHHhCCCCCCCeeeH------------------HHHHHHHHhCCCEEEEEeCCEEEcCCCHHHHHHHHH
Confidence 99999999999887643322344443 699999999999999999999999999999999999
Q ss_pred HH
Q psy17795 364 HY 365 (523)
Q Consensus 364 ~~ 365 (523)
.+
T Consensus 275 ~~ 276 (297)
T PRK10122 275 KY 276 (297)
T ss_pred HH
Confidence 87
No 32
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=100.00 E-value=2.3e-33 Score=273.18 Aligned_cols=225 Identities=28% Similarity=0.479 Sum_probs=188.6
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEE
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRY 173 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~ 173 (523)
|++|||||| +|+||+|+|...||||+|++|+|||+|+++++.+. |+++++|++++..+++.+|+.+....+++.+.+
T Consensus 1 m~~iIlAaG--~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~~-g~~~v~iv~~~~~~~~~~~l~~~~~~~~~~i~~ 77 (233)
T cd06425 1 MKALILVGG--YGTRLRPLTLTVPKPLVEFCNKPMIEHQIEALAKA-GVKEIILAVNYRPEDMVPFLKEYEKKLGIKITF 77 (233)
T ss_pred CcEEEecCC--CccccCccccCCCCccCeECCcchHHHHHHHHHHC-CCcEEEEEeeeCHHHHHHHHhcccccCCeEEEe
Confidence 689999999 99999999999999999999999999999999986 999999999998889999998642345667766
Q ss_pred EecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--cch--HH--HHHHHHhcCCcceEEEEEEe
Q psy17795 174 LQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--IRS--DV--VILMHSLYSMAILVTVMATE 245 (523)
Q Consensus 174 ~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i~~--D~--l~~~h~~~~~~~~~tv~~~~ 245 (523)
..+.++.| ++++++ ++++....++ |+|++ +++ |+ ++++|++.+ +++++++.+
T Consensus 78 ~~~~~~~G-----------------~~~al~~a~~~~~~~~~~-~lv~~~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 137 (233)
T cd06425 78 SIETEPLG-----------------TAGPLALARDLLGDDDEP-FFVLNSDVICDFPLAELLDFHKKHG--AEGTILVTK 137 (233)
T ss_pred ccCCCCCc-----------------cHHHHHHHHHHhccCCCC-EEEEeCCEeeCCCHHHHHHHHHHcC--CCEEEEEEE
Confidence 66666777 999999 6777632356 88877 443 44 888999888 888998887
Q ss_pred eCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCCCCccccc
Q psy17795 246 ATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQ 325 (523)
Q Consensus 246 ~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 325 (523)
.+ ++..||++..|+++++|.++.|||..+.++++++|+|+|++++|+.+.+. ..+
T Consensus 138 ~~--~~~~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giyi~~~~~l~~l~~~-----------------------~~~ 192 (233)
T cd06425 138 VE--DPSKYGVVVHDENTGRIERFVEKPKVFVGNKINAGIYILNPSVLDRIPLR-----------------------PTS 192 (233)
T ss_pred cC--CccccCeEEEcCCCCEEEEEEECCCCCCCCEEEEEEEEECHHHHHhcccC-----------------------ccc
Confidence 64 45789999998733899999999987778899999999999999877541 123
Q ss_pred chhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhccHHHH
Q psy17795 326 LEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHYL 366 (523)
Q Consensus 326 ~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~an~~~l 366 (523)
++.++++.+++++++.+|.++++|.|++++++|+++++.+|
T Consensus 193 ~~~~~~~~l~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l 233 (233)
T cd06425 193 IEKEIFPKMASEGQLYAYELPGFWMDIGQPKDFLKGMSLYL 233 (233)
T ss_pred chhhhHHHHHhcCCEEEEeeCCEEEcCCCHHHHHHHHHHhC
Confidence 44689999999999999999999999999999999998764
No 33
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=100.00 E-value=6.6e-33 Score=272.19 Aligned_cols=228 Identities=24% Similarity=0.446 Sum_probs=186.6
Q ss_pred eEEEEecCCCCCCcCCCCCCCCCcccceeCCc-chHHHHHHHHhcCCCccEEE-EEccCChHHHHHHHHhhhhccCeeEE
Q psy17795 95 TTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGL-PMIQHHIEACVQVPNLKEII-ILGYYPSADLQKFVLDMVQEYKINIR 172 (523)
Q Consensus 95 ~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~-pli~~~l~~~~~~~g~~~i~-vv~~~~~~~i~~~l~~~~~~~~~~i~ 172 (523)
|||||||| +||||+|+|..+||||+|++|+ |||+|+|+++.+. |+++++ |+++++.+.+.+|+++. ..+++++.
T Consensus 1 kavIla~G--~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~-g~~~ii~V~~~~~~~~i~~~~~~~-~~~~~~i~ 76 (248)
T PF00483_consen 1 KAVILAGG--KGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANA-GIKEIIVVVNGYKEEQIEEHLGSG-YKFGVKIE 76 (248)
T ss_dssp EEEEEEES--CCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHT-TCSEEEEEEETTTHHHHHHHHTTS-GGGTEEEE
T ss_pred CEEEECCC--CCccCchhhhccccccceecCCCcchhhhhhhhccc-CCceEEEEEeeccccccccccccc-ccccccce
Confidence 69999999 9999999999999999999999 9999999999996 999955 55557888999999984 45788899
Q ss_pred EEecccccchhhhhcccccccccCCCchhHHH--HhhcccC--CcceEEEEc--cc--hHH--HHHHHHhcCCcc--eEE
Q psy17795 173 YLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWV--QEAVYFTLE--IR--SDV--VILMHSLYSMAI--LVT 240 (523)
Q Consensus 173 ~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~--~d~~~Lvl~--i~--~D~--l~~~h~~~~~~~--~~t 240 (523)
++.+++++| ||+||+ .+++... +++ ||+++ ++ .|+ ++++|++.+ + .++
T Consensus 77 ~i~~~~~~G-----------------ta~al~~a~~~i~~~~~~~~-~lv~~gD~i~~~~~~~~l~~~~~~~--~~~~~~ 136 (248)
T PF00483_consen 77 YIVQPEPLG-----------------TAGALLQALDFIEEEDDDED-FLVLNGDIIFDDDLQDMLEFHRESN--ADGTVT 136 (248)
T ss_dssp EEEESSSSC-----------------HHHHHHHTHHHHTTSEE-SE-EEEETTEEEESTTHHHHHHHHHHHS--SCESEE
T ss_pred eeecccccc-----------------hhHHHHHHHHHhhhccccce-EEEEeccccccchhhhHHHhhhccc--cccccc
Confidence 998888888 999999 7777632 245 88888 33 355 899999887 5 344
Q ss_pred EEEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCCcc-cceeeeeEEEeeHHHHHHHHHhhccc-ccccccccccccCCC
Q psy17795 241 VMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFV-STLVNCGVYLFSLDIFQNIAAVFQSK-QDEFYNGNYMVNGKD 318 (523)
Q Consensus 241 v~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~-~~l~~~Giyif~~~il~~l~~~~~~~-~~e~~~~~~~~~~~~ 318 (523)
+...+. ++++.||.+..|++ ++|.+|.|||+... +.++++|+|+|++++|+.+.+..... .++
T Consensus 137 ~~~~~~--~~~~~~g~v~~d~~-~~V~~~~EKP~~~~~~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~------------ 201 (248)
T PF00483_consen 137 LLVVPV--EDPSRYGVVEVDED-GRVIRIVEKPDNPNASNLINTGIYIFKPEIFDFLLEMIKENARGE------------ 201 (248)
T ss_dssp EEEEES--SGGGGSEEEEEETT-SEEEEEEESCSSHSHSSEEEEEEEEEETHHHHHHHHHHHTCTTSS------------
T ss_pred cccccc--cccccceeeeeccc-eeEEEEeccCcccccceeccCceEEEcchHHHHHhhhhhccchhh------------
Confidence 444443 46789999999986 89999999999877 88999999999999999884422221 222
Q ss_pred CCcccccchhhhhhhhhcCCc-EEEEEcch--hHhhhccchhhhhccHHHHh
Q psy17795 319 TDFNHIQLEKEIIMPLAGSGK-AYVYQTSK--WWSQLKSAGSAIYANRHYLQ 367 (523)
Q Consensus 319 ~~~~~~~~~~dil~~li~~g~-v~~~~~~g--~w~dIgt~~dyl~an~~~l~ 367 (523)
++..|+++.+++.+. +.++..++ +|.|+|++++|++|++.+++
T Consensus 202 ------~~l~d~i~~~~~~~~~~~~~~~~~~~~w~dig~~~~~~~a~~~~~~ 247 (248)
T PF00483_consen 202 ------DFLTDAIPKLLEQGKKVYAFIFEGNAYWIDIGTPEDYLEANMDLLN 247 (248)
T ss_dssp ------HHHHHHHHHHHHTTCEEEEEEHSSEE-EEETSSHHHHHHHHHHHHS
T ss_pred ------hHHHHHHHHHHHcCCceEEEEecCCeEEEECCCHHHHHHHHHHHhc
Confidence 334799999999986 66778888 89999999999999998874
No 34
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=100.00 E-value=6.7e-33 Score=276.59 Aligned_cols=225 Identities=16% Similarity=0.206 Sum_probs=188.2
Q ss_pred eEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEcc-CChHHHHHHHHhhhhccCeeEEE
Q psy17795 95 TTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGY-YPSADLQKFVLDMVQEYKINIRY 173 (523)
Q Consensus 95 ~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~-~~~~~i~~~l~~~~~~~~~~i~~ 173 (523)
|||||||| .||||+|+|..+||||+||+|||||+|+|+.+..+ |+++|+|++. +..+.+++++++ ++.|++++.+
T Consensus 1 kaIILAgG--~GtRL~plT~~~pK~Llpv~gkPmI~~~L~~l~~a-Gi~~I~iv~~~~~~~~~~~~lg~-g~~~g~~i~~ 76 (286)
T TIGR01207 1 KGIILAGG--SGTRLYPITRAVSKQLLPIYDKPMIYYPLSTLMLA-GIRDILIISTPQDTPRFQQLLGD-GSQWGVNLSY 76 (286)
T ss_pred CEEEECCC--CCccCCcccCCCCceeeEECCEEhHHHHHHHHHHC-CCCEEEEEecCCcHHHHHHHhcc-ccccCceEEE
Confidence 58999999 99999999999999999999999999999999986 9999987775 577789999987 3568999999
Q ss_pred EecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc---cch--HH--HHHHHHhcCCcceEEEEEE
Q psy17795 174 LQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE---IRS--DV--VILMHSLYSMAILVTVMAT 244 (523)
Q Consensus 174 ~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~---i~~--D~--l~~~h~~~~~~~~~tv~~~ 244 (523)
+.|++++| ||+|++ ++++.+ ++ +++++ ++. |+ +++.|.+.+ +++++++.
T Consensus 77 ~~q~~~~G-----------------ta~al~~a~~~l~~--~~-~~li~gD~i~~~~~l~~ll~~~~~~~--~~~ti~~~ 134 (286)
T TIGR01207 77 AVQPSPDG-----------------LAQAFIIGEDFIGG--DP-SALVLGDNIFYGHDLSDLLKRAAARE--SGATVFAY 134 (286)
T ss_pred EEccCCCC-----------------HHHHHHHHHHHhCC--CC-EEEEECCEeccccCHHHHHHHHHhcC--CCcEEEEE
Confidence 99888899 999999 778863 44 44444 333 55 788887766 78888888
Q ss_pred eeCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCCCCcccc
Q psy17795 245 EATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHI 324 (523)
Q Consensus 245 ~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 324 (523)
+++ ++.+||++..|++ ++|.++.|||..+.++++++|+|+|++++++.+.+..++.++|+++
T Consensus 135 ~v~--~p~~yGvv~~d~~-g~V~~i~EKp~~~~s~~~~~GiYi~~~~i~~~l~~~~~~~~ge~ei--------------- 196 (286)
T TIGR01207 135 QVS--DPERYGVVEFDSN-GRAISIEEKPAQPKSNYAVTGLYFYDNRVVEIARQLKPSARGELEI--------------- 196 (286)
T ss_pred Ecc--CHHHCceEEECCC-CeEEEEEECCCCCCCCEEEEEEEEEchHHHHHHhhcCCCCCCcEeH---------------
Confidence 874 5789999999976 8999999999888899999999999999998887654433556554
Q ss_pred cchhhhhhhhhcCCcEEEEEc-chh-HhhhccchhhhhccHHHH
Q psy17795 325 QLEKEIIMPLAGSGKAYVYQT-SKW-WSQLKSAGSAIYANRHYL 366 (523)
Q Consensus 325 ~~~~dil~~li~~g~v~~~~~-~g~-w~dIgt~~dyl~an~~~l 366 (523)
+|+++.++++|++.+... +++ |.|+||+++|++|+..+.
T Consensus 197 ---tdv~~~~l~~g~l~v~~~~~g~~W~DiGt~~~l~~A~~~~~ 237 (286)
T TIGR01207 197 ---TDLNRVYLEEGRLSVELLGRGYAWLDTGTHDSLLEASNFIQ 237 (286)
T ss_pred ---HHHHHHHHHcCCcEEEEecCCCEEEeCCCHHHHHHHHHHHH
Confidence 799999999887655544 676 999999999999988764
No 35
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=100.00 E-value=1.2e-32 Score=269.32 Aligned_cols=225 Identities=19% Similarity=0.201 Sum_probs=185.9
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccC-ChHHHHHHHHhhhhccCeeEE
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYY-PSADLQKFVLDMVQEYKINIR 172 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~-~~~~i~~~l~~~~~~~~~~i~ 172 (523)
|++|||||| +|+||+|+|..+||||+|++|+|||+|+|+++.+. |+++|+||+++ ..+++.+|+.+. +.|++++.
T Consensus 1 m~~iIlAaG--~gtRl~plt~~~pK~llpv~~~pli~~~l~~l~~~-gi~~i~vv~~~~~~~~~~~~l~~~-~~~~~~i~ 76 (240)
T cd02538 1 MKGIILAGG--SGTRLYPLTKVVSKQLLPVYDKPMIYYPLSTLMLA-GIREILIISTPEDLPLFKELLGDG-SDLGIRIT 76 (240)
T ss_pred CeEEEEcCc--CcccCCccccCCCceeeEECCEEhHHHHHHHHHHC-CCCEEEEEeCcchHHHHHHHHhcc-cccCceEE
Confidence 689999999 99999999999999999999999999999999986 99999998865 567899999863 56788887
Q ss_pred EEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc---cc--hHH--HHHHHHhcCCcceEEEEE
Q psy17795 173 YLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE---IR--SDV--VILMHSLYSMAILVTVMA 243 (523)
Q Consensus 173 ~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~---i~--~D~--l~~~h~~~~~~~~~tv~~ 243 (523)
+..+.++.| ++++++ ++++. .++ |++++ ++ .|+ +++.|.+.+ +++++++
T Consensus 77 ~~~~~~~~G-----------------~~~al~~a~~~~~--~~~-~lv~~gD~~~~~~~~~~~~~~~~~~~--~~~~~~~ 134 (240)
T cd02538 77 YAVQPKPGG-----------------LAQAFIIGEEFIG--DDP-VCLILGDNIFYGQGLSPILQRAAAQK--EGATVFG 134 (240)
T ss_pred EeeCCCCCC-----------------HHHHHHHHHHhcC--CCC-EEEEECCEEEccHHHHHHHHHHHhcC--CCcEEEE
Confidence 777766677 999999 77775 255 77766 33 345 778887766 7888888
Q ss_pred EeeCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCCCCccc
Q psy17795 244 TEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNH 323 (523)
Q Consensus 244 ~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~ 323 (523)
.+++ ++..||.+..|++ |+|.++.|||....++++++|+|+|++++|+.+.+......+|+++
T Consensus 135 ~~~~--~~~~~g~v~~d~~-g~v~~~~ekp~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~~~~l-------------- 197 (240)
T cd02538 135 YEVN--DPERYGVVEFDEN-GRVLSIEEKPKKPKSNYAVTGLYFYDNDVFEIAKQLKPSARGELEI-------------- 197 (240)
T ss_pred EECC--chhcCceEEecCC-CcEEEEEECCCCCCCCeEEEEEEEECHHHHHHHHhcCCCCCCeEEh--------------
Confidence 8764 4678999999976 8999999999877788999999999999998886543322344443
Q ss_pred ccchhhhhhhhhcCCcEEEEEcc--hhHhhhccchhhhhccHHH
Q psy17795 324 IQLEKEIIMPLAGSGKAYVYQTS--KWWSQLKSAGSAIYANRHY 365 (523)
Q Consensus 324 ~~~~~dil~~li~~g~v~~~~~~--g~w~dIgt~~dyl~an~~~ 365 (523)
+++++.++++|++.++.++ ++|.||+++++|+++++.+
T Consensus 198 ----~d~~~~l~~~g~~~~~~~~~~g~w~digt~~~~~~a~~~~ 237 (240)
T cd02538 198 ----TDVNNEYLEKGKLSVELLGRGFAWLDTGTHESLLEASNFV 237 (240)
T ss_pred ----HHHHHHHHHhCCeEEEEeCCCcEEEeCCCHHHHHHHHHHH
Confidence 6999999998887777665 9999999999999999865
No 36
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=99.98 E-value=4.3e-31 Score=265.63 Aligned_cols=225 Identities=19% Similarity=0.217 Sum_probs=184.2
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhcc------
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEY------ 167 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~------ 167 (523)
|++||+||| .|+||+|+|..+||||+|++|+|+|+|+|+++.++ |+++|+|++++..+++.+|+.+. ..|
T Consensus 9 ~~aiIlaaG--~g~Rl~~~t~~~pK~l~pv~g~pii~~~l~~l~~~-gi~~i~vv~~~~~~~i~~~~~~~-~~~~~~l~~ 84 (302)
T PRK13389 9 KKAVIPVAG--LGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAA-GITEIVLVTHSSKNSIENHFDTS-FELEAMLEK 84 (302)
T ss_pred eEEEEECCc--CCccCCCccCCCCceeeEECCEEHHHHHHHHHHHC-CCCEEEEEeCCCHHHHHHHHccc-hhhhhhhhh
Confidence 789999999 99999999999999999999999999999999986 99999999999999999999752 112
Q ss_pred ----------------CeeEEEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc---cc----
Q psy17795 168 ----------------KINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE---IR---- 222 (523)
Q Consensus 168 ----------------~~~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~---i~---- 222 (523)
+..+.++.|.+++| |++|++ ++++. +++ |+|++ ++
T Consensus 85 ~~~~~~~~e~~~i~~~~~~i~~~~q~~~~G-----------------tg~Av~~a~~~~~--~~~-~lVl~gD~~~~~~~ 144 (302)
T PRK13389 85 RVKRQLLDEVQSICPPHVTIMQVRQGLAKG-----------------LGHAVLCAHPVVG--DEP-VAVILPDVILDEYE 144 (302)
T ss_pred hhhhHHHHhhhhccccCceEEEeecCCCCC-----------------hHHHHHHHHHHcC--CCC-EEEEeCcceecccc
Confidence 23455666666777 999999 67765 356 88887 33
Q ss_pred -----hHH--HHHHHHhcCCcceEEEEEEeeCCCCCcceeEEEEcC------CCCcEEEEeecCC--CcccceeeeeEEE
Q psy17795 223 -----SDV--VILMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQ------QTSEISHYVEKPS--TFVSTLVNCGVYL 287 (523)
Q Consensus 223 -----~D~--l~~~h~~~~~~~~~tv~~~~~~~~~~~~~g~v~~d~------~~~~V~~~~ekp~--~~~~~l~~~Giyi 287 (523)
.|+ ++++|.+.+ ++ ++++.++ +++..||++..|+ ++++|.+|.|||. ...++++++|+|+
T Consensus 145 ~~~~~~dl~~l~~~h~~~~--~~-tl~~~~~--~~~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~~~~s~~~~~GiYi 219 (302)
T PRK13389 145 SDLSQDNLAEMIRRFDETG--HS-QIMVEPV--ADVTAYGVVDCKGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRYV 219 (302)
T ss_pred cccccccHHHHHHHHHhcC--CC-EEEEEEc--ccCCcceEEEecCcccccCCcceEEEEEECCCCCCCCccEEEEEEEE
Confidence 355 888898776 65 6777666 3577999998763 1257999999997 3457899999999
Q ss_pred eeHHHHHHHHHhhcccccccccccccccCCCCCcccccchhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhccHHH
Q psy17795 288 FSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHY 365 (523)
Q Consensus 288 f~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~an~~~ 365 (523)
|++++|+.|........+|+++ +|+++.+++++++++|..+|+|.|+++|++|++++..+
T Consensus 220 ~~~~il~~l~~~~~~~~~e~~l------------------~d~i~~l~~~~~v~~~~~~G~w~DIGtpe~~~~a~~~~ 279 (302)
T PRK13389 220 LSADIWPLLAKTPPGAGDEIQL------------------TDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEY 279 (302)
T ss_pred ECHHHHHHHHhCCCCCCCeeeH------------------HHHHHHHHHcCCEEEEEeeeEEEeCCCHHHHHHHHHHH
Confidence 9999998886643333445543 79999999988999999999999999999999998876
No 37
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=99.97 E-value=4.9e-31 Score=262.04 Aligned_cols=229 Identities=20% Similarity=0.230 Sum_probs=182.7
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhh------c-
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQ------E- 166 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~------~- 166 (523)
|++|||||| .|+||+|+|..+||||+|++|+|||+|+|+++.+. |+++|+|++++..+++.+|+.+... .
T Consensus 1 mkaiIlAaG--~gtRl~plt~~~pK~llpv~gkpli~~~l~~l~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~ 77 (267)
T cd02541 1 RKAVIPAAG--LGTRFLPATKAIPKEMLPIVDKPVIQYIVEEAVAA-GIEDIIIVTGRGKRAIEDHFDRSYELEETLEKK 77 (267)
T ss_pred CeEEEEcCC--CCccCCCcccCCCceeeEECCEEHHHHHHHHHHHC-CCCEEEEEeCCchHHHHHHhCCcHHHHHHHHhc
Confidence 689999999 99999999999999999999999999999999986 9999999999998999999964210 0
Q ss_pred -------------cCeeEEEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc---cc-h---H
Q psy17795 167 -------------YKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE---IR-S---D 224 (523)
Q Consensus 167 -------------~~~~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~---i~-~---D 224 (523)
.+.++.++.+++++| ||++++ ++++.. ++ |+|++ ++ . +
T Consensus 78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~G-----------------t~~al~~~~~~i~~--~~-~lv~~gD~~~~~~~~~ 137 (267)
T cd02541 78 GKTDLLEEVRIISDLANIHYVRQKEPLG-----------------LGHAVLCAKPFIGD--EP-FAVLLGDDLIDSKEPC 137 (267)
T ss_pred ccHHHhhhhhcccCCceEEEEEcCCCCC-----------------hHHHHHHHHHHhCC--Cc-eEEEECCeEEeCCchH
Confidence 144666777777777 999999 777753 56 78877 22 2 3
Q ss_pred H--HHHHHHhcCCcceEEEEEEeeCCCCCcceeEEEEcCC---CCcEEEEeecCC--CcccceeeeeEEEeeHHHHHHHH
Q psy17795 225 V--VILMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQ---TSEISHYVEKPS--TFVSTLVNCGVYLFSLDIFQNIA 297 (523)
Q Consensus 225 ~--l~~~h~~~~~~~~~tv~~~~~~~~~~~~~g~v~~d~~---~~~V~~~~ekp~--~~~~~l~~~Giyif~~~il~~l~ 297 (523)
+ +++.|++.+ ++ ++++..++.+++..||.+..|++ +++|.++.|||. ...+.++++|+|+|++++|+.+.
T Consensus 138 ~~~l~~~~~~~~--~~-~~~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~~~~~~~~Giyi~~~~~~~~l~ 214 (267)
T cd02541 138 LKQLIEAYEKTG--AS-VIAVEEVPPEDVSKYGIVKGEKIDGDVFKVKGLVEKPKPEEAPSNLAIVGRYVLTPDIFDILE 214 (267)
T ss_pred HHHHHHHHHHhC--CC-EEEEEEcChhcCccceEEEeecCCCCceEEeEEEECCCCCCCCCceEEEEEEEcCHHHHHHHH
Confidence 5 888887765 54 45555555445678999998851 258999999986 35678999999999999998886
Q ss_pred HhhcccccccccccccccCCCCCcccccchhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhccHHHH
Q psy17795 298 AVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHYL 366 (523)
Q Consensus 298 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~an~~~l 366 (523)
+......+|+++ .++++.+++++++++|.++++|.|++++++|+++++.+.
T Consensus 215 ~~~~~~~~e~~~------------------~d~i~~l~~~~~v~~~~~~g~w~digt~~~y~~a~~~~~ 265 (267)
T cd02541 215 NTKPGKGGEIQL------------------TDAIAKLLEEEPVYAYVFEGKRYDCGNKLGYLKATVEFA 265 (267)
T ss_pred hCCCCCCCcEEH------------------HHHHHHHHhcCCEEEEEeeeEEEeCCCHHHHHHHHHHHh
Confidence 522222233433 699999999889999999999999999999999998764
No 38
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=99.97 E-value=6e-31 Score=260.36 Aligned_cols=224 Identities=21% Similarity=0.262 Sum_probs=177.3
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhh--------
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQ-------- 165 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~-------- 165 (523)
|+||||||| .|+||+|+|..+||||+|++|+|||+|+|+++.+. |+++|+|++++..+++.+|+.+...
T Consensus 1 m~avIlAaG--~gtRl~plt~~~pK~llpi~g~pli~~~l~~l~~~-gi~~v~iv~~~~~~~i~~~~~~~~~~~~~~~~~ 77 (260)
T TIGR01099 1 RKAVIPAAG--LGTRFLPATKAIPKEMLPIVDKPLIQYVVEEAVEA-GIEDILIVTGRGKRAIEDHFDTSYELEHQLEKR 77 (260)
T ss_pred CeEEEEccc--CcccCCCcccCCCceeEEECCEEHHHHHHHHHHhC-CCCEEEEEeCCcHHHHHHHhcccHHHHHHHHhh
Confidence 689999999 99999999999999999999999999999999985 9999999999999999999974200
Q ss_pred --c----------cCeeEEEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc---c-ch---H
Q psy17795 166 --E----------YKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE---I-RS---D 224 (523)
Q Consensus 166 --~----------~~~~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~---i-~~---D 224 (523)
. ....+.+..+.+++| |+++++ ++++. +++ |+|++ + .. |
T Consensus 78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~G-----------------~~~al~~~~~~~~--~~~-~lv~~gD~~~~~~~~~ 137 (260)
T TIGR01099 78 GKEELLKEVRSISPLATIFYVRQKEQKG-----------------LGHAVLCAEPFVG--DEP-FAVILGDDIVVSEEPA 137 (260)
T ss_pred hhHHHHHHhhhccccceEEEEecCCCCC-----------------HHHHHHHHHHhhC--CCC-EEEEeccceecCCcHH
Confidence 0 013455555656667 999999 77774 356 78877 2 22 5
Q ss_pred H--HHHHHHhcCCcceEEEEEEeeCCCCCcceeEEEEcC---CCCcEEEEeecCC--CcccceeeeeEEEeeHHHHHHHH
Q psy17795 225 V--VILMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQ---QTSEISHYVEKPS--TFVSTLVNCGVYLFSLDIFQNIA 297 (523)
Q Consensus 225 ~--l~~~h~~~~~~~~~tv~~~~~~~~~~~~~g~v~~d~---~~~~V~~~~ekp~--~~~~~l~~~Giyif~~~il~~l~ 297 (523)
+ ++++|++.+ +++ +++..++.+++.+||++..|. ++++|.++.|||. ...++++++|+|+|++++|+.+.
T Consensus 138 ~~~l~~~~~~~~--~~i-i~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~~~~~~~~Giyi~~~~~~~~l~ 214 (260)
T TIGR01099 138 LKQMIDLYEKYG--CSI-IAVEEVPKEEVSKYGVIDGEGVEEGLYEIKDMVEKPKPEEAPSNLAIVGRYVLTPDIFDLLE 214 (260)
T ss_pred HHHHHHHHHHhC--CCE-EEEEECChhhcccCceEEeccccCCceeEEEEEECCCCCCCCCceEEEEEEECCHHHHHHHH
Confidence 6 889998877 665 555555545678999998862 2269999999984 34577999999999999998886
Q ss_pred HhhcccccccccccccccCCCCCcccccchhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhc
Q psy17795 298 AVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYA 361 (523)
Q Consensus 298 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~a 361 (523)
.......+++++ +|+++.+++++++++|.++|||.|++++++|+++
T Consensus 215 ~~~~~~~~~~~l------------------~d~i~~l~~~~~v~~~~~~g~w~digs~~~y~~a 260 (260)
T TIGR01099 215 ETPPGAGGEIQL------------------TDALRKLLEKETVYAYKFKGKRYDCGSKLGYLKA 260 (260)
T ss_pred hCCCCCCCceeH------------------HHHHHHHHhcCCEEEEEcceEEEeCCCHHHHhhC
Confidence 533222234433 6899999998899999999999999999999875
No 39
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=99.97 E-value=3.5e-30 Score=251.04 Aligned_cols=226 Identities=25% Similarity=0.338 Sum_probs=186.8
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEE
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRY 173 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~ 173 (523)
|+||||||| .|+||+|+|...||||+|++|+|||+|+++++.+. |+++|+|++++..+.+++++.+. ..|++++.+
T Consensus 1 m~avIlAaG--~g~Rl~plt~~~pK~l~~i~g~~li~~~l~~l~~~-~~~~i~vv~~~~~~~~~~~~~~~-~~~~~~i~~ 76 (236)
T cd04189 1 MKGLILAGG--KGTRLRPLTYTRPKQLIPVAGKPIIQYAIEDLREA-GIEDIGIVVGPTGEEIKEALGDG-SRFGVRITY 76 (236)
T ss_pred CeEEEECCC--ccccccccccCCCceeeEECCcchHHHHHHHHHHC-CCCEEEEEcCCCHHHHHHHhcch-hhcCCeEEE
Confidence 789999999 99999999999999999999999999999999986 99999999999889999999873 357778878
Q ss_pred EecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--cc--hHH--HHHHHHhcCCcceEEEEEEe
Q psy17795 174 LQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--IR--SDV--VILMHSLYSMAILVTVMATE 245 (523)
Q Consensus 174 ~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i~--~D~--l~~~h~~~~~~~~~tv~~~~ 245 (523)
+.+..+.| ++++++ ++++. .++ +++++ .+ .|+ +++.|.+.+ +++++++.+
T Consensus 77 ~~~~~~~g-----------------~~~sl~~a~~~i~--~~~-~li~~~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 134 (236)
T cd04189 77 ILQEEPLG-----------------LAHAVLAARDFLG--DEP-FVVYLGDNLIQEGISPLVRDFLEED--ADASILLAE 134 (236)
T ss_pred EECCCCCC-----------------hHHHHHHHHHhcC--CCC-EEEEECCeecCcCHHHHHHHHHhcC--CceEEEEEE
Confidence 77766677 999999 66765 345 77777 33 344 777787777 788888877
Q ss_pred eCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCCCCccccc
Q psy17795 246 ATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQ 325 (523)
Q Consensus 246 ~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 325 (523)
.+ ++..||.+..|+ ++|.++.|||....+.+.++|+|+|++++++.+........++|++
T Consensus 135 ~~--~~~~~g~~~~d~--~~v~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~---------------- 194 (236)
T cd04189 135 VE--DPRRFGVAVVDD--GRIVRLVEKPKEPPSNLALVGVYAFTPAIFDAISRLKPSWRGELEI---------------- 194 (236)
T ss_pred CC--CcccceEEEEcC--CeEEEEEECCCCCCCCEEEEEEEEeCHHHHHHHHhcCCCCCCeEEH----------------
Confidence 64 457899888874 6999999999766678999999999999998775432222344443
Q ss_pred chhhhhhhhhcCCc-EEEEEcchhHhhhccchhhhhccHHHHh
Q psy17795 326 LEKEIIMPLAGSGK-AYVYQTSKWWSQLKSAGSAIYANRHYLQ 367 (523)
Q Consensus 326 ~~~dil~~li~~g~-v~~~~~~g~w~dIgt~~dyl~an~~~l~ 367 (523)
+++++.+++.|. +.+++.+++|.+++|+++|.++++.+++
T Consensus 195 --~d~~~~~i~~g~~v~~~~~~~~~~~i~t~~dl~~a~~~~l~ 235 (236)
T cd04189 195 --TDAIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEANRLLLD 235 (236)
T ss_pred --HHHHHHHHHcCCcEEEEEcCceEEeCCCHHHHHHHHHHHHh
Confidence 689999998775 9999999999999999999999998875
No 40
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=99.97 E-value=2.5e-30 Score=254.80 Aligned_cols=219 Identities=18% Similarity=0.262 Sum_probs=176.8
Q ss_pred eEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhh-ccCeeE--
Q psy17795 95 TTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQ-EYKINI-- 171 (523)
Q Consensus 95 ~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~-~~~~~i-- 171 (523)
|||||||| .|+||+|+|..+||||+||+|+|||+|+|+.+.+. |+++|+|++++..+++.+|+.+... ..++++
T Consensus 1 kavilaaG--~gtRl~~~t~~~pK~llpv~g~pii~~~l~~l~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~ 77 (254)
T TIGR02623 1 KAVILAGG--LGTRISEETHLRPKPMVEIGGKPILWHIMKIYSHH-GINDFIICCGYKGYVIKEYFANYFLHMSDVTFHM 77 (254)
T ss_pred CEEEEcCc--cccccCccccCCCcceeEECCEEHHHHHHHHHHHC-CCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEe
Confidence 58999999 99999999999999999999999999999999986 9999999999999999999976311 002222
Q ss_pred -----------------EEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--cc--hHH--H
Q psy17795 172 -----------------RYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--IR--SDV--V 226 (523)
Q Consensus 172 -----------------~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i~--~D~--l 226 (523)
.+..+.+++| |+++++ ++++. .++ |++++ ++ .|+ +
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~g-----------------t~~al~~~~~~i~--~e~-flv~~gD~i~~~dl~~~ 137 (254)
T TIGR02623 78 ADNTMEVHHKRVEPWRVTLVDTGESTQ-----------------TGGRLKRVREYLD--DEA-FCFTYGDGVADIDIKAL 137 (254)
T ss_pred cccccccccccCCccceeeeecCCcCC-----------------cHHHHHHHHHhcC--CCe-EEEEeCCeEecCCHHHH
Confidence 2233334455 999999 77875 356 88888 44 455 8
Q ss_pred HHHHHhcCCcceEEEEEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccc
Q psy17795 227 ILMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDE 306 (523)
Q Consensus 227 ~~~h~~~~~~~~~tv~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e 306 (523)
+++|.+.+ +++|+++.+ ++..||.+..|+ ++|.+|.|||... +.++++|+|+|++++|+.+.+.
T Consensus 138 ~~~h~~~~--~d~tl~~~~----~~~~yG~v~~d~--~~V~~~~Ekp~~~-~~~i~~Giyi~~~~il~~l~~~------- 201 (254)
T TIGR02623 138 IAFHRKHG--KKATVTAVQ----PPGRFGALDLEG--EQVTSFQEKPLGD-GGWINGGFFVLNPSVLDLIDGD------- 201 (254)
T ss_pred HHHHHHcC--CCEEEEEec----CCCcccEEEECC--CeEEEEEeCCCCC-CCeEEEEEEEEcHHHHhhcccc-------
Confidence 88898877 888876542 356899998884 6899999998643 6799999999999998766441
Q ss_pred cccccccccCCCCCcccccchhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhccHHHHhh
Q psy17795 307 FYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQL 368 (523)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~an~~~l~~ 368 (523)
..++.+|+++.+++++++++|.++|||.|++|+++|.+++..+.+.
T Consensus 202 ----------------~~~~~~d~i~~l~~~~~v~~~~~~g~w~dIgt~~~~~~~~~~~~~~ 247 (254)
T TIGR02623 202 ----------------ATVWEQEPLETLAQRGELSAYEHSGFWQPMDTLRDKNYLEELWESG 247 (254)
T ss_pred ----------------CchhhhhHHHHHHhCCCEEEEeCCCEEecCCchHHHHHHHHHHHcC
Confidence 1234579999999999999999999999999999999988877643
No 41
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.97 E-value=3e-29 Score=242.17 Aligned_cols=210 Identities=20% Similarity=0.303 Sum_probs=173.0
Q ss_pred eEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEEE
Q psy17795 95 TTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRYL 174 (523)
Q Consensus 95 ~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~ 174 (523)
|||||||| +|+||+|+|..+||||+|++|+|||+|+|++|.+. |+++|+|+++++.+++.+|+.+ +.|++.+.+.
T Consensus 1 kaiIlaaG--~g~Rl~plt~~~pK~llpi~g~~li~~~l~~l~~~-gi~~i~iv~~~~~~~i~~~~~~--~~~~~~i~~~ 75 (221)
T cd06422 1 KAMILAAG--LGTRMRPLTDTRPKPLVPVAGKPLIDHALDRLAAA-GIRRIVVNTHHLADQIEAHLGD--SRFGLRITIS 75 (221)
T ss_pred CEEEEcCC--CCCccccccCCCCCceeeECCEEHHHHHHHHHHHC-CCCEEEEEccCCHHHHHHHHhc--ccCCceEEEe
Confidence 58999999 99999999999999999999999999999999996 9999999999999999999986 4578888777
Q ss_pred ecc-cccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--cc--hHH--HHHHHHh--cCCcceEEEEE
Q psy17795 175 QEF-WDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--IR--SDV--VILMHSL--YSMAILVTVMA 243 (523)
Q Consensus 175 ~~~-~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i~--~D~--l~~~h~~--~~~~~~~tv~~ 243 (523)
.+. +.+| ++++++ ++++.. ++ |++++ .+ .|+ +++.|.+ .+ +.+++..
T Consensus 76 ~~~~~~~g-----------------~~~~l~~~~~~~~~--~~-~lv~~~D~i~~~~~~~~~~~~~~~~~~--~~~~~~~ 133 (221)
T cd06422 76 DEPDELLE-----------------TGGGIKKALPLLGD--EP-FLVVNGDILWDGDLAPLLLLHAWRMDA--LLLLLPL 133 (221)
T ss_pred cCCCcccc-----------------cHHHHHHHHHhcCC--CC-EEEEeCCeeeCCCHHHHHHHHHhccCC--CceEEEE
Confidence 665 5667 999999 777752 56 88887 33 344 7777873 33 5666665
Q ss_pred EeeCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCCCCccc
Q psy17795 244 TEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNH 323 (523)
Q Consensus 244 ~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~ 323 (523)
.+. +++..||.+..|++ ++|..+.|||.. .++++|+|+|+++++..+.+. +++
T Consensus 134 ~~~--~~~~~~g~v~~d~~-~~v~~~~~~~~~---~~~~~Giyi~~~~~l~~l~~~------~~~--------------- 186 (221)
T cd06422 134 VRN--PGHNGVGDFSLDAD-GRLRRGGGGAVA---PFTFTGIQILSPELFAGIPPG------KFS--------------- 186 (221)
T ss_pred EEc--CCCCCcceEEECCC-CcEeecccCCCC---ceEEEEEEEEcHHHHhhCCcC------ccc---------------
Confidence 554 34678899999876 899999998753 789999999999988866431 222
Q ss_pred ccchhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhc
Q psy17795 324 IQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYA 361 (523)
Q Consensus 324 ~~~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~a 361 (523)
+ +++++.++++++++++..+++|.|++++++|.+|
T Consensus 187 --~-~d~~~~l~~~~~~~~~~~~g~w~di~t~~~~~~a 221 (221)
T cd06422 187 --L-NPLWDRAIAAGRLFGLVYDGLWFDVGTPERLLAA 221 (221)
T ss_pred --H-HHHHHHHHHcCCeEEEecCCEEEcCCCHHHHhhC
Confidence 2 6899999998999999999999999999999865
No 42
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=1.4e-28 Score=233.43 Aligned_cols=233 Identities=18% Similarity=0.187 Sum_probs=192.8
Q ss_pred ccceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhh------
Q psy17795 91 SCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMV------ 164 (523)
Q Consensus 91 ~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~------ 164 (523)
|+-+||||+||| .||||.|.|..+||-||||-+||+|+|+++.+.++ ||++|++|++..+..|++||....
T Consensus 2 ~~irKAViPaAG--lGTRfLPATKaiPKEMLPIvdKP~IqYiVeEa~~a-GIe~i~iVTgr~K~~IeDhFD~s~ELE~~L 78 (291)
T COG1210 2 MKIRKAVIPAAG--LGTRFLPATKAIPKEMLPIVDKPLIQYIVEEAVAA-GIEEILIVTGRGKRAIEDHFDTSYELENTL 78 (291)
T ss_pred CcccEEEEEccC--cccccccccccCchhhccccCchhHHHHHHHHHHc-CCCEEEEEecCCcchHHHhCcCcHHHHHHH
Confidence 455799999999 99999999999999999999999999999999996 999999999987778988886420
Q ss_pred ------------h--ccCeeEEEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc---cchH-
Q psy17795 165 ------------Q--EYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE---IRSD- 224 (523)
Q Consensus 165 ------------~--~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~---i~~D- 224 (523)
+ .-..++.|++|.+++| .+||++ ++++.+ ++ |.|+- ++.+
T Consensus 79 ~~~~K~~~L~~v~~i~~~~~i~~vRQ~e~~G-----------------LGhAVl~A~~~vg~--Ep-FaVlL~Ddl~~~~ 138 (291)
T COG1210 79 EKRGKRELLEEVRSIPPLVTISFVRQKEPLG-----------------LGHAVLCAKPFVGD--EP-FAVLLPDDLVDSE 138 (291)
T ss_pred HHhCHHHHHHHHHhcccCceEEEEecCCCCc-----------------chhHHHhhhhhcCC--Cc-eEEEeCCeeecCC
Confidence 1 1145789999999999 999999 888874 56 77654 2221
Q ss_pred H-----HHHHHHhcCCcceEEEEEEeeCCCCCcceeEEE----EcCCCCcEEEEeecCC--CcccceeeeeEEEeeHHHH
Q psy17795 225 V-----VILMHSLYSMAILVTVMATEATRQQSVYYGCIV----RKQQTSEISHYVEKPS--TFVSTLVNCGVYLFSLDIF 293 (523)
Q Consensus 225 ~-----l~~~h~~~~~~~~~tv~~~~~~~~~~~~~g~v~----~d~~~~~V~~~~ekp~--~~~~~l~~~Giyif~~~il 293 (523)
. |.+.+.+.+ .. ++.+.+++.++.++||++. .+.+..+|..++|||+ +..|+++-.|-|+|+|++|
T Consensus 139 ~~~l~qmi~~ye~~g--~s-vi~v~ev~~e~v~kYGvi~~g~~~~~~~~~v~~~VEKP~~~~APSnlai~GRYil~p~IF 215 (291)
T COG1210 139 KPCLKQMIELYEETG--GS-VIGVEEVPPEDVSKYGVIDPGEPVEKGVYKVKGMVEKPKPEEAPSNLAIVGRYVLTPEIF 215 (291)
T ss_pred chHHHHHHHHHHHhC--Cc-EEEEEECCHHHCcccceEecCccccCCeEEEEEEEECCCCCCCCcceeeeeeeecCHHHH
Confidence 1 666666665 43 6777888877889999886 3332248999999985 5689999999999999999
Q ss_pred HHHHHhhcccccccccccccccCCCCCcccccchhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhccHHHHh
Q psy17795 294 QNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQ 367 (523)
Q Consensus 294 ~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~an~~~l~ 367 (523)
+.|++......+|+++ +|.+..|++...++++.+.|-.+|+|++..|++++..+.-
T Consensus 216 d~L~~~~~G~ggEiQL------------------TDai~~L~~~~~v~a~~~~GkryD~G~k~Gyi~a~v~~~l 271 (291)
T COG1210 216 DILEETKPGAGGEIQL------------------TDAIKKLLKKEPVLAYVFEGKRYDCGSKLGYIKANVEFAL 271 (291)
T ss_pred HHHhhCCCCCCCEeeH------------------HHHHHHHHhhCcEEEEEecccEEccCCcccHHHHHHHHHh
Confidence 9998865555667766 7999999999889999999999999999999999987754
No 43
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=99.96 E-value=2.4e-28 Score=240.79 Aligned_cols=230 Identities=19% Similarity=0.276 Sum_probs=174.3
Q ss_pred EEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhc-cCeeEE--
Q psy17795 96 TNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQE-YKINIR-- 172 (523)
Q Consensus 96 ~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~-~~~~i~-- 172 (523)
||||||| +|+||+|+|..+||||+|++|+|||+|+++.+.+. |+++|+|++++..+++++|+.+..+. .++++.
T Consensus 1 aiilaaG--~g~Rl~plt~~~pK~llpv~~~p~i~~~~~~~~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 77 (253)
T cd02524 1 VVILAGG--LGTRLSEETELKPKPMVEIGGRPILWHIMKIYSHY-GHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLG 77 (253)
T ss_pred CEEEecC--CccccCCccCCCCceEEEECCEEHHHHHHHHHHhC-CCceEEEECCCCHHHHHHHHHhhhhhcCceeEeec
Confidence 5899999 99999999999999999999999999999999986 99999999999999999999873210 112221
Q ss_pred -----EEeccc-ccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--cc--hHH--HHHHHHhcCCcce
Q psy17795 173 -----YLQEFW-DIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--IR--SDV--VILMHSLYSMAIL 238 (523)
Q Consensus 173 -----~~~~~~-~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i~--~D~--l~~~h~~~~~~~~ 238 (523)
+..+.. +++ +..-.. ...++|+++++ ++++.. +++ |++++ ++ .|+ ++++|...+ ++
T Consensus 78 ~~~~~~~~~~~~~~~-----~~~~~~-~~~~~t~~al~~a~~~~~~-~~~-~lv~~gD~i~~~dl~~ll~~h~~~~--~~ 147 (253)
T cd02524 78 TNRIELHNSDIEDWK-----VTLVDT-GLNTMTGGRLKRVRRYLGD-DET-FMLTYGDGVSDVNINALIEFHRSHG--KL 147 (253)
T ss_pred ccceeeecccccccc-----eeeccc-CcccccHHHHHHHHHhcCC-CCe-EEEEcCCEEECCCHHHHHHHHHHcC--CC
Confidence 121110 000 000000 01122899998 777752 256 88888 33 344 888888877 88
Q ss_pred EEEEEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCC
Q psy17795 239 VTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKD 318 (523)
Q Consensus 239 ~tv~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~ 318 (523)
+|+++.. .+..||.+..|++ ++|..+.|||... +.++++|+|+|++++++.+.+. .
T Consensus 148 ~tl~~~~----~~~~~g~v~~d~~-g~V~~~~ekp~~~-~~~i~~Giyi~~~~l~~~l~~~-----~------------- 203 (253)
T cd02524 148 ATVTAVH----PPGRFGELDLDDD-GQVTSFTEKPQGD-GGWINGGFFVLEPEVFDYIDGD-----D------------- 203 (253)
T ss_pred EEEEEec----CCCcccEEEECCC-CCEEEEEECCCCC-CceEEEEEEEECHHHHHhhccc-----c-------------
Confidence 8877653 3468999999987 8999999998754 5789999999999998776542 1
Q ss_pred CCcccccchhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhccHHHHh
Q psy17795 319 TDFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQ 367 (523)
Q Consensus 319 ~~~~~~~~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~an~~~l~ 367 (523)
.++.+++++.++++++++++.++|+|.+|+++++|..+...+.+
T Consensus 204 -----~~~~~d~l~~li~~~~v~~~~~~g~w~~I~t~~~~~~~~~~~~~ 247 (253)
T cd02524 204 -----TVFEREPLERLAKDGELMAYKHTGFWQCMDTLRDKQTLEELWNS 247 (253)
T ss_pred -----chhhHHHHHHHHhcCCEEEEecCCEEEeCcCHHHHHHHHHHHHc
Confidence 12336999999999999999999999999999999999877754
No 44
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=99.96 E-value=5.7e-28 Score=231.97 Aligned_cols=209 Identities=25% Similarity=0.482 Sum_probs=173.8
Q ss_pred EEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEEEe
Q psy17795 96 TNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRYLQ 175 (523)
Q Consensus 96 ~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~ 175 (523)
||||||| .|+||+|+|..+||+|+|++|+|||+|+++.+.+. ++++|+|++++..+.+.+++.+. ..++..+.++.
T Consensus 1 aiIlaaG--~g~R~~~~t~~~pK~ll~v~g~pli~~~l~~l~~~-g~~~i~vv~~~~~~~i~~~~~~~-~~~~~~i~~~~ 76 (217)
T cd04181 1 AVILAAG--KGTRLRPLTDTRPKPLLPIAGKPILEYIIERLARA-GIDEIILVVGYLGEQIEEYFGDG-SKFGVNIEYVV 76 (217)
T ss_pred CEEecCC--ccccccccccCCCccccEECCeeHHHHHHHHHHHC-CCCEEEEEeccCHHHHHHHHcCh-hhcCceEEEEe
Confidence 5899999 99999999999999999999999999999999986 99999999999888999999763 33677787777
Q ss_pred cccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--cc--hHH--HHHHHHhcCCcceEEEEEEeeC
Q psy17795 176 EFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--IR--SDV--VILMHSLYSMAILVTVMATEAT 247 (523)
Q Consensus 176 ~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i~--~D~--l~~~h~~~~~~~~~tv~~~~~~ 247 (523)
+.++.| ++++++ ++++. .++ |++++ .+ .|+ +++.|.+.+ +++++++.+.+
T Consensus 77 ~~~~~g-----------------~~~al~~~~~~~~--~~~-~lv~~~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 134 (217)
T cd04181 77 QEEPLG-----------------TAGAVRNAEDFLG--DDD-FLVVNGDVLTDLDLSELLRFHREKG--ADATIAVKEVE 134 (217)
T ss_pred CCCCCc-----------------cHHHHHHhhhhcC--CCC-EEEEECCeecCcCHHHHHHHHHhcC--CCEEEEEEEcC
Confidence 766667 999999 66663 466 88887 33 344 778888777 88888888764
Q ss_pred CCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCCCCcccccch
Q psy17795 248 RQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQLE 327 (523)
Q Consensus 248 ~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 327 (523)
++..||.+..|++ ++|.++.|||......++++|+|+|++++++.+.+... ..+ ++.
T Consensus 135 --~~~~~~~v~~d~~-~~v~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~--~~~------------------~~~ 191 (217)
T cd04181 135 --DPSRYGVVELDDD-GRVTRFVEKPTLPESNLANAGIYIFEPEILDYIPEILP--RGE------------------DEL 191 (217)
T ss_pred --CCCcceEEEEcCC-CcEEEEEECCCCCCCCEEEEEEEEECHHHHHhhhhcCC--ccc------------------ccH
Confidence 5678999999986 89999999997766789999999999999987765332 122 234
Q ss_pred hhhhhhhhcCCcEEEEEcchhHhhhc
Q psy17795 328 KEIIMPLAGSGKAYVYQTSKWWSQLK 353 (523)
Q Consensus 328 ~dil~~li~~g~v~~~~~~g~w~dIg 353 (523)
.++++.+++++++++++++|+|.|++
T Consensus 192 ~~~~~~l~~~~~v~~~~~~g~w~dig 217 (217)
T cd04181 192 TDAIPLLIEEGKVYGYPVDGYWLDIG 217 (217)
T ss_pred HHHHHHHHhcCCEEEEEcCCEEecCC
Confidence 79999999888899999999999875
No 45
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=99.96 E-value=8.3e-28 Score=231.71 Aligned_cols=214 Identities=22% Similarity=0.331 Sum_probs=175.1
Q ss_pred EEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEEEe
Q psy17795 96 TNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRYLQ 175 (523)
Q Consensus 96 ~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~ 175 (523)
||||||| +|+||+|+|...||+|+|++|+|||+|+++++.+. ++++|+|++++..+.+.+++... ..++..+.+..
T Consensus 1 aiIlaaG--~g~R~~~~t~~~pK~ll~i~g~pli~~~l~~l~~~-g~~~v~vv~~~~~~~i~~~~~~~-~~~~~~~~~~~ 76 (223)
T cd06915 1 AVILAGG--LGTRLRSVVKDLPKPLAPVAGRPFLEYLLEYLARQ-GISRIVLSVGYLAEQIEEYFGDG-YRGGIRIYYVI 76 (223)
T ss_pred CEEecCC--cccccCcccCCCCccccEECCcchHHHHHHHHHHC-CCCEEEEEcccCHHHHHHHHcCc-cccCceEEEEE
Confidence 5899999 99999999999999999999999999999999986 99999999999888999998752 22566666666
Q ss_pred cccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--cc--hHH--HHHHHHhcCCcceEEEEEEeeC
Q psy17795 176 EFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--IR--SDV--VILMHSLYSMAILVTVMATEAT 247 (523)
Q Consensus 176 ~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i~--~D~--l~~~h~~~~~~~~~tv~~~~~~ 247 (523)
+.+..| ++++++ ++++. .++ |++++ .+ .|+ +++.|++.+ +++++++.+..
T Consensus 77 ~~~~~G-----------------~~~~l~~a~~~~~--~~~-~lv~~~D~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~ 134 (223)
T cd06915 77 EPEPLG-----------------TGGAIKNALPKLP--EDQ-FLVLNGDTYFDVDLLALLAALRASG--ADATMALRRVP 134 (223)
T ss_pred CCCCCc-----------------chHHHHHHHhhcC--CCC-EEEEECCcccCCCHHHHHHHHHhCC--CcEEEEEEECC
Confidence 656677 999998 66764 356 88877 22 344 677777766 77888887763
Q ss_pred CCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCCCCcccccch
Q psy17795 248 RQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQLE 327 (523)
Q Consensus 248 ~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 327 (523)
++..||.+..|++ ++|..+.|||....+.++++|+|+|++++|+.+... ..++.
T Consensus 135 --~~~~~~~v~~d~~-~~v~~~~ek~~~~~~~~~~~Giy~~~~~~l~~~~~~-----------------------~~~~~ 188 (223)
T cd06915 135 --DASRYGNVTVDGD-GRVIAFVEKGPGAAPGLINGGVYLLRKEILAEIPAD-----------------------AFSLE 188 (223)
T ss_pred --CCCcceeEEECCC-CeEEEEEeCCCCCCCCcEEEEEEEECHHHHhhCCcc-----------------------CCChH
Confidence 3468898888876 899999999876667899999999999998765431 11244
Q ss_pred hhhhhhhhcCCcEEEEEcchhHhhhccchhhhhc
Q psy17795 328 KEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYA 361 (523)
Q Consensus 328 ~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~a 361 (523)
+++++.+++.+++.+++.+++|.||++++||+.+
T Consensus 189 ~~~~~~l~~~~~v~~~~~~~~~~dI~t~~dl~~a 222 (223)
T cd06915 189 ADVLPALVKRGRLYGFEVDGYFIDIGIPEDYARA 222 (223)
T ss_pred HHHHHHHHhcCcEEEEecCCeEEecCCHHHHHhh
Confidence 7899999988899999999999999999999876
No 46
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.95 E-value=2.3e-27 Score=228.67 Aligned_cols=211 Identities=24% Similarity=0.414 Sum_probs=171.1
Q ss_pred EEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEEEe
Q psy17795 96 TNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRYLQ 175 (523)
Q Consensus 96 ~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~ 175 (523)
||||||| +|+||+|+|...||+|+|++|+|||+|+|++|.+. ++++|+|++++..+.+++|+.+. ..|++++.++.
T Consensus 1 ~vIlaaG--~g~R~~plt~~~pK~ll~~~g~pli~~~l~~l~~~-~~~~iivv~~~~~~~i~~~~~~~-~~~~~~i~~~~ 76 (220)
T cd06426 1 VVIMAGG--KGTRLRPLTENTPKPMLKVGGKPILETIIDRFIAQ-GFRNFYISVNYLAEMIEDYFGDG-SKFGVNISYVR 76 (220)
T ss_pred CEEecCC--CccccCcccCCCCCccCeECCcchHHHHHHHHHHC-CCcEEEEECccCHHHHHHHHCCc-cccCccEEEEE
Confidence 5899999 99999999999999999999999999999999986 99999999999888999998863 34677777777
Q ss_pred cccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--cc--hHH--HHHHHHhcCCcceEEEEEEeeC
Q psy17795 176 EFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--IR--SDV--VILMHSLYSMAILVTVMATEAT 247 (523)
Q Consensus 176 ~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i~--~D~--l~~~h~~~~~~~~~tv~~~~~~ 247 (523)
++.++| |++++. .+.. .++ |+|++ .+ .++ +++.|+..+ +++++++.+..
T Consensus 77 ~~~~~g-----------------~~~~l~~~~~~~---~~~-~lv~~~D~i~~~~~~~l~~~~~~~~--~~~~~~~~~~~ 133 (220)
T cd06426 77 EDKPLG-----------------TAGALSLLPEKP---TDP-FLVMNGDILTNLNYEHLLDFHKENN--ADATVCVREYE 133 (220)
T ss_pred CCCCCc-----------------chHHHHHHHhhC---CCC-EEEEcCCEeeccCHHHHHHHHHhcC--CCEEEEEEEcC
Confidence 666777 899988 3333 356 88877 32 244 778888776 78888877643
Q ss_pred CCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCCCCcccccch
Q psy17795 248 RQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQLE 327 (523)
Q Consensus 248 ~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 327 (523)
....||.+..|+ ++|.++.|||.. +.++++|+|+|++++++.+.+ ..+|+ +
T Consensus 134 --~~~~~g~~~~d~--~~v~~~~ek~~~--~~~~~~Giy~~~~~~~~~i~~-----~~~~~-----------------l- 184 (220)
T cd06426 134 --VQVPYGVVETEG--GRITSIEEKPTH--SFLVNAGIYVLEPEVLDLIPK-----NEFFD-----------------M- 184 (220)
T ss_pred --CCCcceEEEECC--CEEEEEEECCCC--CCeEEEEEEEEcHHHHhhcCC-----CCCcC-----------------H-
Confidence 345789888874 799999999754 578999999999999877632 12222 2
Q ss_pred hhhhhhhhcCCc-EEEEEcchhHhhhccchhhhhcc
Q psy17795 328 KEIIMPLAGSGK-AYVYQTSKWWSQLKSAGSAIYAN 362 (523)
Q Consensus 328 ~dil~~li~~g~-v~~~~~~g~w~dIgt~~dyl~an 362 (523)
+++++.+++++. +.++.++++|.+++|+++|.+|+
T Consensus 185 ~~~~~~~i~~~~~i~~~~~~~~w~~igt~~dl~~a~ 220 (220)
T cd06426 185 PDLIEKLIKEGKKVGVFPIHEYWLDIGRPEDYEKAN 220 (220)
T ss_pred HHHHHHHHHCCCcEEEEEeCCeEEeCCCHHHHHhhC
Confidence 689999988765 99999999999999999998875
No 47
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.93 E-value=2e-25 Score=214.93 Aligned_cols=173 Identities=18% Similarity=0.275 Sum_probs=138.0
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccC-----
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYK----- 168 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~----- 168 (523)
++||||||| .|+||+|+|..+||||+||+|+|||+|+|+++.++ |+++|+|++++..+++++|+++. ..|+
T Consensus 1 ~~aiIla~G--~g~Rl~plt~~~pK~llpi~g~piI~~~l~~l~~~-Gi~~I~iv~~~~~~~i~~~l~~~-~~~~~~~~~ 76 (217)
T cd04197 1 LQAVVLADS--FNRRFRPLTKEKPRCLLPLANVPLIDYTLEFLALN-GVEEVFVFCCSHSDQIKEYIEKS-KWSKPKSSL 76 (217)
T ss_pred CeEEEEcCC--CcccccccccCCCceeeEECCEehHHHHHHHHHHC-CCCeEEEEeCCCHHHHHHHHhhc-cccccccCc
Confidence 469999999 99999999999999999999999999999999996 99999999999999999999874 3343
Q ss_pred eeEEEEecccccchhhhhcccccccccCCCchhHHH----HhhcccCCcceEEEEc--cc--hHH--HHHHHHhc-----
Q psy17795 169 INIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY----RNSLHWVQEAVYFTLE--IR--SDV--VILMHSLY----- 233 (523)
Q Consensus 169 ~~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~----~~~i~~~~d~~~Lvl~--i~--~D~--l~~~h~~~----- 233 (523)
..+.++.+++..+ ++++++ ++++ .++ |++++ .+ .|+ ++++|+++
T Consensus 77 ~~i~~~~~~~~~~-----------------~~~al~~~~~~~~~---~~~-flv~~gD~i~~~dl~~~l~~h~~~~~~~~ 135 (217)
T cd04197 77 MIVIIIMSEDCRS-----------------LGDALRDLDAKGLI---RGD-FILVSGDVVSNIDLKEILEEHKERRKKDK 135 (217)
T ss_pred ceEEEEeCCCcCc-----------------cchHHHHHhhcccc---CCC-EEEEeCCeeeccCHHHHHHHHHHhhcccc
Confidence 3466666656566 888886 2233 256 88887 44 355 88999874
Q ss_pred CCcceEEEEEEeeCCCCC----cceeEEEEcCCCCcEEEEeecCCCc--------------------ccceeeeeEEEee
Q psy17795 234 SMAILVTVMATEATRQQS----VYYGCIVRKQQTSEISHYVEKPSTF--------------------VSTLVNCGVYLFS 289 (523)
Q Consensus 234 ~~~~~~tv~~~~~~~~~~----~~~g~v~~d~~~~~V~~~~ekp~~~--------------------~~~l~~~Giyif~ 289 (523)
+ +++|+++.+++.+.. ..+|++.+|+++++|+.|.|||..+ .+++.++|+|+|+
T Consensus 136 ~--a~~t~~~~~~~~~~~~~~~~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~~i~~~l~d~~iYi~~ 213 (217)
T cd04197 136 N--AIMTMVLKEASPPHRTRRTGEEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEVEIRHDLLDCHIDICS 213 (217)
T ss_pred C--ceEEEEEEeCCCccccccCCCceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcEEEECCceecCEEEeC
Confidence 5 889998888754331 2367888887668999999998532 3789999999999
Q ss_pred HHHH
Q psy17795 290 LDIF 293 (523)
Q Consensus 290 ~~il 293 (523)
++++
T Consensus 214 ~~vl 217 (217)
T cd04197 214 PDVL 217 (217)
T ss_pred CCCC
Confidence 9864
No 48
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=99.93 E-value=5.5e-25 Score=213.57 Aligned_cols=221 Identities=17% Similarity=0.266 Sum_probs=162.2
Q ss_pred EEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEEEe
Q psy17795 96 TNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRYLQ 175 (523)
Q Consensus 96 ~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~ 175 (523)
||||||| +|+||+|+|..+||||+|++|+|||+|+|+++.+. |+++|+|++++..+.+.+|+.+. .++.+.+..
T Consensus 1 aiIlAaG--~g~Rl~~lt~~~pK~l~~~~g~~li~~~l~~l~~~-gi~~i~vv~~~~~~~~~~~~~~~---~~~~~~~~~ 74 (229)
T cd02523 1 AIILAAG--RGSRLRPLTEDRPKCLLEINGKPLLERQIETLKEA-GIDDIVIVTGYKKEQIEELLKKY---PNIKFVYNP 74 (229)
T ss_pred CEEEecc--CccccchhhCCCCceeeeECCEEHHHHHHHHHHHC-CCceEEEEeccCHHHHHHHHhcc---CCeEEEeCc
Confidence 5899999 99999999999999999999999999999999986 99999999999989999998752 333332222
Q ss_pred cccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--cchHH-HHHHHHhcCCcceEEEEEEeeCCCC
Q psy17795 176 EFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--IRSDV-VILMHSLYSMAILVTVMATEATRQQ 250 (523)
Q Consensus 176 ~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i~~D~-l~~~h~~~~~~~~~tv~~~~~~~~~ 250 (523)
+.++.| ++++++ ++++. ++ |++++ .+++. +++.|.+.+ ++.++++.+..+..
T Consensus 75 ~~~~~g-----------------~~~s~~~~~~~~~---~~-~lv~~~D~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 131 (229)
T cd02523 75 DYAETN-----------------NIYSLYLARDFLD---ED-FLLLEGDVVFDPSILERLLSSP--ADNAILVDKKTKEW 131 (229)
T ss_pred chhhhC-----------------cHHHHHHHHHHcC---CC-EEEEeCCEecCHHHHHHHHcCC--CCCeEEEccCcccc
Confidence 223456 899998 66763 56 88877 44455 777787776 78888887643333
Q ss_pred CcceeEEEEcCCCCcEEEEeecCCCcc-cceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCCCCcccccchhh
Q psy17795 251 SVYYGCIVRKQQTSEISHYVEKPSTFV-STLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKE 329 (523)
Q Consensus 251 ~~~~g~v~~d~~~~~V~~~~ekp~~~~-~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~d 329 (523)
...++....| + +++..+.+||.... ..+.++|+|+|++++++.|.+....... ..+...+.++
T Consensus 132 ~~~~~~~~~~-~-~~v~~~~~k~~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~--------------~~~~~~~~~d 195 (229)
T cd02523 132 EDEYVKDLDD-A-GVLLGIISKAKNLEEIQGEYVGISKFSPEDADRLAEALEELIE--------------AGRVNLYYED 195 (229)
T ss_pred cccceeeecC-c-cceEeecccCCCcchhceEEEeEEEECHHHHHHHHHHHHHHHh--------------cccccccHHH
Confidence 4455543333 3 68999999986543 5689999999999998877653321100 0001122378
Q ss_pred hhhhhhcCCc--EEEEEcchhHhhhccchhhhhcc
Q psy17795 330 IIMPLAGSGK--AYVYQTSKWWSQLKSAGSAIYAN 362 (523)
Q Consensus 330 il~~li~~g~--v~~~~~~g~w~dIgt~~dyl~an 362 (523)
+++.++++.. ++.+.. ++|.+++++++|++|+
T Consensus 196 ~i~~l~~~~~~~v~~~~~-~~w~dI~~~ed~~~a~ 229 (229)
T cd02523 196 ALQRLISEEGVKVKDISD-GFWYEIDDLEDLERAE 229 (229)
T ss_pred HHHHHHhhcCeeEEEcCC-CCEEEeCCHHHHHhhC
Confidence 9999987444 445555 8999999999998763
No 49
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.91 E-value=1.4e-23 Score=203.96 Aligned_cols=212 Identities=16% Similarity=0.225 Sum_probs=153.8
Q ss_pred EEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCCh---HHHHHHHHhhhhccCeeEE
Q psy17795 96 TNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPS---ADLQKFVLDMVQEYKINIR 172 (523)
Q Consensus 96 ~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~---~~i~~~l~~~~~~~~~~i~ 172 (523)
+|||||| +|+||+|+|..+||||+|++|+|||+|+|+.+.+. |++++++++++.. +.+.+++... ..++++.
T Consensus 1 ~iIlAaG--~g~Rl~plt~~~pK~ll~i~g~pli~~~l~~l~~~-g~~~ivvv~~~~~~~~~~~~~~~~~~--~~~~~i~ 75 (231)
T cd04183 1 IIIPMAG--LGSRFKKAGYTYPKPLIEVDGKPMIEWVIESLAKI-FDSRFIFICRDEHNTKFHLDESLKLL--APNATVV 75 (231)
T ss_pred CEEECCc--CCccccccCCCCCceeeEECCEEHHHHHHHhhhcc-CCceEEEEEChHHhhhhhHHHHHHHh--CCCCEEE
Confidence 3899999 99999999999999999999999999999999986 8999999886422 2233333321 1244553
Q ss_pred EEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--cch--HH--HHHHHHhcCCcceEEEEEE
Q psy17795 173 YLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--IRS--DV--VILMHSLYSMAILVTVMAT 244 (523)
Q Consensus 173 ~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i~~--D~--l~~~h~~~~~~~~~tv~~~ 244 (523)
+ .+.++.| |+++++ ++++.. .++ |++++ .++ |+ +++.|.+.+ .+.++++.
T Consensus 76 ~-~~~~~~g-----------------~~~~l~~a~~~l~~-~~~-~lv~~~D~i~~~~~~~~~~~~~~~~--~~~~i~~~ 133 (231)
T cd04183 76 E-LDGETLG-----------------AACTVLLAADLIDN-DDP-LLIFNCDQIVESDLLAFLAAFRERD--LDGGVLTF 133 (231)
T ss_pred E-eCCCCCc-----------------HHHHHHHHHhhcCC-CCC-EEEEecceeeccCHHHHHHHhhccC--CceEEEEE
Confidence 3 3445667 999999 666642 356 88887 333 33 556666555 56666665
Q ss_pred eeCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHH-HH-HHHHHhhcc---cccccccccccccCCCC
Q psy17795 245 EATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLD-IF-QNIAAVFQS---KQDEFYNGNYMVNGKDT 319 (523)
Q Consensus 245 ~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~-il-~~l~~~~~~---~~~e~~~~~~~~~~~~~ 319 (523)
.. ....||.+..|++ ++|..+.||+. .+.++++|+|+|+++ +| +.+.+.... ..+++++
T Consensus 134 ~~---~~~~~~~v~~d~~-~~v~~~~ek~~--~~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~~~~~~~~---------- 197 (231)
T cd04183 134 FS---SHPRWSYVKLDEN-GRVIETAEKEP--ISDLATAGLYYFKSGSLFVEAAKKMIRKDDSVNGEFYI---------- 197 (231)
T ss_pred eC---CCCCeEEEEECCC-CCEEEeEEcCC--CCCccEeEEEEECcHHHHHHHHHHHHhhcccccCcEEE----------
Confidence 54 2347999989887 89999998853 457899999999987 44 445442211 1233332
Q ss_pred CcccccchhhhhhhhhcCCc-EEEEEc-chhHhhhccchhh
Q psy17795 320 DFNHIQLEKEIIMPLAGSGK-AYVYQT-SKWWSQLKSAGSA 358 (523)
Q Consensus 320 ~~~~~~~~~dil~~li~~g~-v~~~~~-~g~w~dIgt~~dy 358 (523)
.++++.++++|. +.++.. .++|.|++++++|
T Consensus 198 --------~d~i~~~~~~g~~v~~~~~~~~~w~di~t~~dl 230 (231)
T cd04183 198 --------SPLYNELILDGKKVGIYLIDKDDYHSFGTPEDL 230 (231)
T ss_pred --------hHHHHHHHHcCCEEEEEEeccccEEEcCChHhc
Confidence 689999998875 999998 6999999999886
No 50
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=99.91 E-value=4.8e-24 Score=202.71 Aligned_cols=184 Identities=22% Similarity=0.384 Sum_probs=138.9
Q ss_pred EEEEecCCCCCCcCCCCCCCCCcccceeCCc-chHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCee----
Q psy17795 96 TNDTTPGPLKGTRFRPLSLDSPKPLFPVAGL-PMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKIN---- 170 (523)
Q Consensus 96 ~iila~g~g~g~R~~~lT~~~pK~ll~i~g~-pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~---- 170 (523)
||||||| +|+||+|+|...||+|+|++|+ |||+|+++++.+. |+++++|++++..+++.+|+.+. ..|+++
T Consensus 1 avILAaG--~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~-gi~~iivv~~~~~~~i~~~~~~~-~~~~~~~~~~ 76 (200)
T cd02508 1 AIILAGG--EGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNS-GIRNVGVLTQYKSRSLNDHLGSG-KEWDLDRKNG 76 (200)
T ss_pred CEEeCCC--CCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHC-CCCEEEEEeCCChHHHHHHHhCC-CcccCCCCCC
Confidence 5899999 9999999999999999999998 9999999999986 99999999999999999999763 345443
Q ss_pred -EEEEecccccchhhhhcccccccccCCCchhHHH--Hhhccc-CCcceEEEEc--cc--hHH--HHHHHHhcCCcceEE
Q psy17795 171 -IRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHW-VQEAVYFTLE--IR--SDV--VILMHSLYSMAILVT 240 (523)
Q Consensus 171 -i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~-~~d~~~Lvl~--i~--~D~--l~~~h~~~~~~~~~t 240 (523)
+.++...+.. +++|..| ||+|++ ++++.. .+++ |+|++ .+ .|+ ++++|++.+ +++|
T Consensus 77 ~~~~~~~~~~~---------~~~~~~G--ta~al~~a~~~i~~~~~~~-~lv~~gD~v~~~~~~~~l~~~~~~~--~~~t 142 (200)
T cd02508 77 GLFILPPQQRK---------GGDWYRG--TADAIYQNLDYIERSDPEY-VLILSGDHIYNMDYREMLDFHIESG--ADIT 142 (200)
T ss_pred CEEEeCcccCC---------CCCcccC--cHHHHHHHHHHHHhCCCCE-EEEecCCEEEecCHHHHHHHHHHcC--CCEE
Confidence 3343311100 1122333 999999 777752 2366 88887 33 344 888888777 7777
Q ss_pred EEEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHH-HHHhhcccccccccccccccCCCC
Q psy17795 241 VMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQN-IAAVFQSKQDEFYNGNYMVNGKDT 319 (523)
Q Consensus 241 v~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~-l~~~~~~~~~e~~~~~~~~~~~~~ 319 (523)
+++. +++|+|+|++++|.. +... ....++
T Consensus 143 ~~~~------------------------------------~~~g~yi~~~~~~~~~l~~~-~~~~~~------------- 172 (200)
T cd02508 143 VVYK------------------------------------ASMGIYIFSKDLLIELLEED-AADGSH------------- 172 (200)
T ss_pred EEEh------------------------------------hcCEEEEEEHHHHHHHHHHH-hccCcc-------------
Confidence 6654 778999999999854 4442 212222
Q ss_pred CcccccchhhhhhhhhcCCcEEEEEcchhHhhh
Q psy17795 320 DFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQL 352 (523)
Q Consensus 320 ~~~~~~~~~dil~~li~~g~v~~~~~~g~w~dI 352 (523)
++.+|+++.++++++++++..++||.|+
T Consensus 173 -----~~~~d~i~~l~~~~~v~~~~~~g~w~di 200 (200)
T cd02508 173 -----DFGKDIIPAMLKKLKIYAYEFNGYWADI 200 (200)
T ss_pred -----hhHHHHHHHHhccCcEEEEEeCCeEecC
Confidence 3448999999999889999999999875
No 51
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=99.89 E-value=3.7e-22 Score=198.68 Aligned_cols=233 Identities=16% Similarity=0.162 Sum_probs=156.9
Q ss_pred eeEEEEecCCCCCCcCCCCCC-CCCcccceeCC-cchHHHHHHHHhcCCCccEEEEEccC-ChHHHHHHHHhhhhccCee
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSL-DSPKPLFPVAG-LPMIQHHIEACVQVPNLKEIIILGYY-PSADLQKFVLDMVQEYKIN 170 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~-~~pK~ll~i~g-~pli~~~l~~~~~~~g~~~i~vv~~~-~~~~i~~~l~~~~~~~~~~ 170 (523)
|++|||||| .||||+|+|. .+||||+|++| +|||+|+++++....++++|+|++++ +.+.+++++.+ ....
T Consensus 1 m~~vILAgG--~GtRl~PlS~~~~PK~ll~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~----~~~~ 74 (274)
T cd02509 1 IYPVILAGG--SGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPE----GLPE 74 (274)
T ss_pred CEEEEEccc--ccccCCcCCCCCCCceEeEcCCCCcHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhh----cCCC
Confidence 579999999 9999999996 79999999999 99999999999986459999999987 44566677754 1234
Q ss_pred EEEEecccccchhhhhcccccccccCCCchhHHH--Hhhcc--cCCcceEEEEc---cch---HH--HHHHHHh---cCC
Q psy17795 171 IRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLH--WVQEAVYFTLE---IRS---DV--VILMHSL---YSM 235 (523)
Q Consensus 171 i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~--~~~d~~~Lvl~---i~~---D~--l~~~h~~---~~~ 235 (523)
+.++.+++++| |++++. ..++. +.++. ++|++ ++. ++ +++.+.+ .+
T Consensus 75 ~~ii~ep~~~g-----------------Ta~ai~~a~~~~~~~~~~~~-vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~- 135 (274)
T cd02509 75 ENIILEPEGRN-----------------TAPAIALAALYLAKRDPDAV-LLVLPSDHLIEDVEAFLKAVKKAVEAAEEG- 135 (274)
T ss_pred ceEEECCCCCC-----------------cHHHHHHHHHHHHhcCCCCe-EEEecchhcccCHHHHHHHHHHHHHHHHcC-
Confidence 56777777777 999998 55554 22345 78877 332 33 3332222 44
Q ss_pred cceEEEEEEeeCCCCCcceeEEEEcCCC-C---cEEEEeecCCCc--------ccceeeeeEEEeeHHH-HHHHHHhhcc
Q psy17795 236 AILVTVMATEATRQQSVYYGCIVRKQQT-S---EISHYVEKPSTF--------VSTLVNCGVYLFSLDI-FQNIAAVFQS 302 (523)
Q Consensus 236 ~~~~tv~~~~~~~~~~~~~g~v~~d~~~-~---~V~~~~ekp~~~--------~~~l~~~Giyif~~~i-l~~l~~~~~~ 302 (523)
+.+|+.+.+. .....||++..+++. + +|.+|.|||... ...++|+|+|+|+++. ++.|++..++
T Consensus 136 -~~vt~gi~p~--~~~t~yGyI~~~~~~~~~~~~V~~f~EKP~~~~a~~~~~~g~~~wNsGiyi~~~~~l~~~l~~~~p~ 212 (274)
T cd02509 136 -YLVTFGIKPT--RPETGYGYIEAGEKLGGGVYRVKRFVEKPDLETAKEYLESGNYLWNSGIFLFRAKTFLEELKKHAPD 212 (274)
T ss_pred -CEEEEEeeec--CCCCCeEEEEeCCcCCCCceEEeEEEECcChHHHHHHhhcCCeEEECceeeeeHHHHHHHHHHHCHH
Confidence 6777777665 234789999998641 2 899999999732 2358999999999874 4555544332
Q ss_pred ccccccc--ccc-c------ccCCCCCcccccchhhhhhhhhcCCcEEEEEcchhHhhhccchh
Q psy17795 303 KQDEFYN--GNY-M------VNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGS 357 (523)
Q Consensus 303 ~~~e~~~--~~~-~------~~~~~~~~~~~~~~~dil~~li~~g~v~~~~~~g~w~dIgt~~d 357 (523)
....+.. ... . ....|...+..||...++ .+..++.+++.+..|-|+|++.+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sidyavm---e~~~~~~v~~~~~~W~D~G~w~~ 273 (274)
T cd02509 213 IYEALEKALAAAGTDDFLRLLEEAFAKIPSISIDYAVM---EKTKKVAVVPADFGWSDLGSWDA 273 (274)
T ss_pred HHHHHHHHHHhcCCchhhhhhHHHHhhCCCcccchHhh---eeCCCcEEEecCCCcCcccCccc
Confidence 2000000 000 0 001123334455544443 34455888899999999999865
No 52
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=99.89 E-value=1.4e-21 Score=189.48 Aligned_cols=209 Identities=20% Similarity=0.301 Sum_probs=155.3
Q ss_pred EEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEEEe
Q psy17795 96 TNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRYLQ 175 (523)
Q Consensus 96 ~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~ 175 (523)
||||||| .|+||++ ..||+|+|++|+|||+|+++++.+. ++++++|++++..+.+.+++.+ ++ ++++.
T Consensus 1 aiIlaaG--~g~R~~~---~~pK~l~~v~gkpli~~~i~~l~~~-~i~~i~iv~~~~~~~i~~~~~~----~~--~~~~~ 68 (229)
T cd02540 1 AVILAAG--KGTRMKS---DLPKVLHPLAGKPMLEHVLDAARAL-GPDRIVVVVGHGAEQVKKALAN----PN--VEFVL 68 (229)
T ss_pred CEEEeCC--CCccCCC---CCChhcceeCCccHHHHHHHHHHhC-CCCeEEEEECCCHHHHHHHhCC----CC--cEEEE
Confidence 5899999 9999997 7899999999999999999999986 9999999999888888888765 33 44555
Q ss_pred cccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--c--c--hHH--HHHHHHhcCCcceEEEEEEe
Q psy17795 176 EFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--I--R--SDV--VILMHSLYSMAILVTVMATE 245 (523)
Q Consensus 176 ~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i--~--~D~--l~~~h~~~~~~~~~tv~~~~ 245 (523)
+.+..| ++++++ .+++....+. |++++ . + .++ +++.|.+.+ +++++.+.+
T Consensus 69 ~~~~~g-----------------~~~ai~~a~~~~~~~~~~-vli~~~D~p~~~~~~i~~l~~~~~~~~--~~~~~~~~~ 128 (229)
T cd02540 69 QEEQLG-----------------TGHAVKQALPALKDFEGD-VLVLYGDVPLITPETLQRLLEAHREAG--ADVTVLTAE 128 (229)
T ss_pred CCCCCC-----------------CHHHHHHHHHhhccCCCe-EEEEeCCccccCHHHHHHHHHHHHhcC--CcEEEEEEE
Confidence 555566 999999 6666422356 77776 2 2 233 677777665 677777766
Q ss_pred eCCCCCcceeEEEEcCCCCcEEEEeecCCCc----ccceeeeeEEEeeHHHH-HHHHHhhccc-ccccccccccccCCCC
Q psy17795 246 ATRQQSVYYGCIVRKQQTSEISHYVEKPSTF----VSTLVNCGVYLFSLDIF-QNIAAVFQSK-QDEFYNGNYMVNGKDT 319 (523)
Q Consensus 246 ~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~----~~~l~~~Giyif~~~il-~~l~~~~~~~-~~e~~~~~~~~~~~~~ 319 (523)
.. ++..||.+..|++ ++|.++.|||... ...++++|+|+|+++.+ +.+....... .+++++
T Consensus 129 ~~--~p~~~~~~~~~~~-~~v~~~~ek~~~~~~~~~~~~~~~giy~~~~~~~~~~l~~~~~~~~~~~~~~---------- 195 (229)
T cd02540 129 LE--DPTGYGRIIRDGN-GKVLRIVEEKDATEEEKAIREVNAGIYAFDAEFLFEALPKLTNNNAQGEYYL---------- 195 (229)
T ss_pred cC--CCCCccEEEEcCC-CCEEEEEECCCCChHHHhhceEEeEEEEEEHHHHHHHHHHcccccCCCcEEH----------
Confidence 53 5678998888776 8999999987422 23689999999998754 5565432211 233333
Q ss_pred CcccccchhhhhhhhhcCCc-EEEEEcchhH--hhhccchh
Q psy17795 320 DFNHIQLEKEIIMPLAGSGK-AYVYQTSKWW--SQLKSAGS 357 (523)
Q Consensus 320 ~~~~~~~~~dil~~li~~g~-v~~~~~~g~w--~dIgt~~d 357 (523)
+++++.+++.|. ++++..+||| +.++++.+
T Consensus 196 --------~d~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~ 228 (229)
T cd02540 196 --------TDIIALAVADGLKVAAVLADDEEEVLGVNDRVQ 228 (229)
T ss_pred --------HHHHHHHHHCCCEEEEEEcCCcceEecCCChHh
Confidence 799999998875 9999998776 45666654
No 53
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.87 E-value=1.6e-21 Score=187.61 Aligned_cols=174 Identities=19% Similarity=0.284 Sum_probs=129.6
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhh---cc--C
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQ---EY--K 168 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~---~~--~ 168 (523)
|+||||||| .|+||.|+|...||+|+|++|+|||+|+++++.+. |+++|+|++++..+.+.+++.+... .. +
T Consensus 1 ~~avIlagg--~g~rl~plt~~~pK~llpv~g~pli~~~l~~l~~~-gi~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (216)
T cd02507 1 FQAVVLADG--FGSRFLPLTSDIPKALLPVANVPLIDYTLEWLEKA-GVEEVFVVCCEHSQAIIEHLLKSKWSSLSSKMI 77 (216)
T ss_pred CeEEEEeCC--CccccCccccCCCcccceECCEEHHHHHHHHHHHC-CCCeEEEEeCCcHHHHHHHHHhcccccccCCce
Confidence 579999999 99999999999999999999999999999999985 9999999999988899999986321 01 2
Q ss_pred eeEEEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--cc--hHH--HHHH--HHhcCCcce
Q psy17795 169 INIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--IR--SDV--VILM--HSLYSMAIL 238 (523)
Q Consensus 169 ~~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i~--~D~--l~~~--h~~~~~~~~ 238 (523)
+.+.+..+.++.| ||++++ ++++. ++ |++++ .+ .|+ +++. +...+ ++
T Consensus 78 v~~~~~~~~~~~G-----------------ta~~l~~~~~~i~---~d-flv~~gD~i~~~~l~~~l~~~r~~~~~--~~ 134 (216)
T cd02507 78 VDVITSDLCESAG-----------------DALRLRDIRGLIR---SD-FLLLSCDLVSNIPLSELLEERRKKDKN--AI 134 (216)
T ss_pred EEEEEccCCCCCc-----------------cHHHHHHHhhcCC---CC-EEEEeCCEeecCCHHHHHHHHHhhCcc--cc
Confidence 3333444445666 999998 66664 46 88887 44 344 5543 33334 55
Q ss_pred EEEEEEeeCCCC-------CcceeEEEEcCCC--CcEEEEeecCCC------------------cccceeeeeEEEeeHH
Q psy17795 239 VTVMATEATRQQ-------SVYYGCIVRKQQT--SEISHYVEKPST------------------FVSTLVNCGVYLFSLD 291 (523)
Q Consensus 239 ~tv~~~~~~~~~-------~~~~g~v~~d~~~--~~V~~~~ekp~~------------------~~~~l~~~Giyif~~~ 291 (523)
+++++....... ...++.+..|+++ .++.++.|+|.. ..+++.++|+|+|+++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~i~~dl~D~~iyi~s~~ 214 (216)
T cd02507 135 ATLTVLLASPPVSTEQSKKTEEEDVIAVDSKTQRLLLLHYEEDLDEDLELIIRKSLLSKHPNVTIRTDLLDCHIYICSPD 214 (216)
T ss_pred eEEEEEeccCCCCccccccCCCCcEEEEcCCCCceEEEechhhcCcCcccccCHHHHhcCCCEEEEcCcccccEEEecCc
Confidence 565555433222 4568899999876 567777776542 3678999999999998
Q ss_pred HH
Q psy17795 292 IF 293 (523)
Q Consensus 292 il 293 (523)
++
T Consensus 215 Vl 216 (216)
T cd02507 215 VL 216 (216)
T ss_pred CC
Confidence 64
No 54
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.86 E-value=2.6e-21 Score=185.92 Aligned_cols=174 Identities=18% Similarity=0.284 Sum_probs=132.8
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccC-ChHHHHHHHHhhh--hccCee
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYY-PSADLQKFVLDMV--QEYKIN 170 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~-~~~~i~~~l~~~~--~~~~~~ 170 (523)
|+||||||| .|+||+|+|...||+|+|++|+|||+|+++++.+. |+++|+|++++ ..+.+++++.+.. ...+..
T Consensus 1 ~~aVILAgG--~g~R~~plt~~~pK~Llpv~g~pli~~~l~~l~~~-g~~~iivv~~~~~~~~i~~~l~~~~~~~~~~~~ 77 (214)
T cd04198 1 FQAVILAGG--GGSRLYPLTDNIPKALLPVANKPMIWYPLDWLEKA-GFEDVIVVVPEEEQAEISTYLRSFPLNLKQKLD 77 (214)
T ss_pred CEEEEEeCC--CCCcCCccccCCCcccCEECCeeHHHHHHHHHHHC-CCCeEEEEECHHHHHHHHHHHHhcccccCccee
Confidence 579999999 99999999999999999999999999999999995 99999999987 4456888886521 111233
Q ss_pred EEEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--cchH--H--HHHHHHhcCCcceEEEE
Q psy17795 171 IRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--IRSD--V--VILMHSLYSMAILVTVM 242 (523)
Q Consensus 171 i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i~~D--~--l~~~h~~~~~~~~~tv~ 242 (523)
+.+..+.+.+| |+++++ .+.+. ++ |+|++ .+++ + +++.|++.+ +.+|++
T Consensus 78 ~~~~~~~~~~g-----------------t~~al~~~~~~i~---~d-~lv~~~D~i~~~~l~~~l~~h~~~~--~~~t~~ 134 (214)
T cd04198 78 EVTIVLDEDMG-----------------TADSLRHIRKKIK---KD-FLVLSCDLITDLPLIELVDLHRSHD--ASLTVL 134 (214)
T ss_pred EEEecCCCCcC-----------------hHHHHHHHHhhcC---CC-EEEEeCccccccCHHHHHHHHhccC--CcEEEE
Confidence 44444556667 999999 55553 46 88887 4433 3 888898877 889999
Q ss_pred EEeeCCC-----------CCcceeEEEEcCCCCcEEEEeecC-----------------C-CcccceeeeeEEEeeHHHH
Q psy17795 243 ATEATRQ-----------QSVYYGCIVRKQQTSEISHYVEKP-----------------S-TFVSTLVNCGVYLFSLDIF 293 (523)
Q Consensus 243 ~~~~~~~-----------~~~~~g~v~~d~~~~~V~~~~ekp-----------------~-~~~~~l~~~Giyif~~~il 293 (523)
+.+.... .+..+..+..|+++++++.+.... . ...+++.|+|+|+|+++++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~l~D~hiyi~~~~v~ 214 (214)
T cd04198 135 LYPPPVSSEQKGGKGKSKKADERDVIGLDEKTQRLLFITSEEDLDEDLELRKSLLKRHPRVTITTKLLDAHVYIFKRWVL 214 (214)
T ss_pred EeccCCcccccCCcccccCCCCCceEEEcCCCCEEEEECCHHHhhhhhhHHHHHHHhCCCEEEEcCcccceEEEEEeeeC
Confidence 8875421 123467888888888999886521 1 2468899999999998763
No 55
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.86 E-value=3.3e-20 Score=181.87 Aligned_cols=219 Identities=10% Similarity=0.029 Sum_probs=148.8
Q ss_pred cceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeE
Q psy17795 92 CGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINI 171 (523)
Q Consensus 92 ~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i 171 (523)
|++.+||||+| .|+||. +|+|+|++|+|||+|+++.+.+. ++++|+|++++ +.+.+++.. ++..+
T Consensus 1 m~~~~iIlA~g--~S~R~~------~K~Ll~i~Gkpll~~~l~~l~~~-~i~~ivvv~~~--~~i~~~~~~----~~~~v 65 (245)
T PRK05450 1 MKFLIIIPARY--ASTRLP------GKPLADIGGKPMIVRVYERASKA-GADRVVVATDD--ERIADAVEA----FGGEV 65 (245)
T ss_pred CceEEEEecCC--CCCCCC------CCcccccCCcCHHHHHHHHHHhc-CCCeEEEECCc--HHHHHHHHH----cCCEE
Confidence 45668999999 999994 69999999999999999999987 99999998864 567777754 45556
Q ss_pred EEEecccccchhhhhcccccccccCCCchhHHH-Hhhcc-cCCcceEEEEc--c-c--hH-H--HHHHHHhcCCcceEEE
Q psy17795 172 RYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY-RNSLH-WVQEAVYFTLE--I-R--SD-V--VILMHSLYSMAILVTV 241 (523)
Q Consensus 172 ~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~-~~~i~-~~~d~~~Lvl~--i-~--~D-~--l~~~h~~~~~~~~~tv 241 (523)
.+..+....| +++... ...+. ...+. +|+++ . + .+ + +++.|+..+ .+.++
T Consensus 66 ~~~~~~~~~g-----------------t~~~~~~~~~~~~~~~~~-vlv~~~D~Pli~~~~l~~li~~~~~~~--~~~~~ 125 (245)
T PRK05450 66 VMTSPDHPSG-----------------TDRIAEAAAKLGLADDDI-VVNVQGDEPLIPPEIIDQVAEPLANPE--ADMAT 125 (245)
T ss_pred EECCCcCCCc-----------------hHHHHHHHHhcCCCCCCE-EEEecCCCCCCCHHHHHHHHHHHhcCC--CCeEe
Confidence 5544544445 555444 33332 12345 77766 2 2 12 2 666666554 55566
Q ss_pred EEEeeCC----CCCcceeEEEEcCCCCcEEEEeecCCC----------cccceeeeeEEEeeHHHHHHHHHhhccccccc
Q psy17795 242 MATEATR----QQSVYYGCIVRKQQTSEISHYVEKPST----------FVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEF 307 (523)
Q Consensus 242 ~~~~~~~----~~~~~~g~v~~d~~~~~V~~~~ekp~~----------~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~ 307 (523)
++.+... .++..++++ +|++ |+|++|.|||.. ..+++.++|+|+|++++++.+.+.... ++
T Consensus 126 ~~~~~~~~~~~~~~~~~~v~-~d~~-g~v~~~~e~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~~~~---~~ 200 (245)
T PRK05450 126 LAVPIHDAEEAFNPNVVKVV-LDAD-GRALYFSRAPIPYGRDAFADSAPTPVYRHIGIYAYRRGFLRRFVSLPPS---PL 200 (245)
T ss_pred eeeecCCHHHhcCcCCCEEE-eCCC-CcEEEecCCCCCCCCCccccccCccccEEEEEEecCHHHHHHHHhCCCC---cc
Confidence 5555421 345567755 7776 899999999832 235899999999999999887663211 11
Q ss_pred ccccccccCCCCCcccccchhhhhhhhhcCCcEEEEEcch-hHhhhccchhhhhccHHH
Q psy17795 308 YNGNYMVNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSK-WWSQLKSAGSAIYANRHY 365 (523)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~dil~~li~~g~v~~~~~~g-~w~dIgt~~dyl~an~~~ 365 (523)
+. . +. .++++.+.+...++++..++ +|.++++++||.+++..+
T Consensus 201 ~~-----------~---~~-~~~~~~~~~g~~v~~~~~~~~~w~~i~~~~dl~~a~~~~ 244 (245)
T PRK05450 201 EK-----------I---ES-LEQLRALENGYRIHVVVVEEAPSIGVDTPEDLERVRALL 244 (245)
T ss_pred cc-----------c---hh-HHHHHHHHCCCceEEEEeCCCCCCCcCCHHHHHHHHHHh
Confidence 11 0 11 12334333333599999986 999999999999998654
No 56
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.85 E-value=1.9e-20 Score=199.41 Aligned_cols=237 Identities=16% Similarity=0.165 Sum_probs=152.5
Q ss_pred eeEEEEecCCCCCCcCCCCCCC-CCcccceeCC-cchHHHHHHHHhcCCCccEEEEEccC-ChHHHHHHHHhhhhccCee
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLD-SPKPLFPVAG-LPMIQHHIEACVQVPNLKEIIILGYY-PSADLQKFVLDMVQEYKIN 170 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~-~pK~ll~i~g-~pli~~~l~~~~~~~g~~~i~vv~~~-~~~~i~~~l~~~~~~~~~~ 170 (523)
|.+|||||| .||||+|||.. +||||+++.| +|||+|+++.|... ++++++||++. +...+.+.+.+ ++.+
T Consensus 1 ~~~vILAgG--~GtRl~PlS~~~~PK~~l~l~g~~~ll~~tl~~l~~~-~~~~iviv~~~~~~~~~~~~l~~----~~~~ 73 (468)
T TIGR01479 1 IIPVILAGG--SGTRLWPLSRELYPKQFLALVGDLTMLQQTLKRLAGL-PCSSPLVICNEEHRFIVAEQLRE----IGKL 73 (468)
T ss_pred CEEEEecCc--ccccCCccccCCCCCceeEcCCCCcHHHHHHHHHhcC-CCcCcEEecCHHHHHHHHHHHHH----cCCC
Confidence 469999999 99999999996 9999999977 89999999999986 89999999875 33345555554 3333
Q ss_pred -EEEEecccccchhhhhcccccccccCCCchhHHH--Hhhcc-c-CCcceEEEEc---cchH---H--HHHHH---HhcC
Q psy17795 171 -IRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLH-W-VQEAVYFTLE---IRSD---V--VILMH---SLYS 234 (523)
Q Consensus 171 -i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~-~-~~d~~~Lvl~---i~~D---~--l~~~h---~~~~ 234 (523)
..++.|+.++| ||+++. ..++. . .++++++|++ ++.| + +++.+ .+.+
T Consensus 74 ~~~~i~Ep~~~g-----------------Ta~ai~~aa~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~ 136 (468)
T TIGR01479 74 ASNIILEPVGRN-----------------TAPAIALAALLAARRNGEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEG 136 (468)
T ss_pred cceEEecccccC-----------------chHHHHHHHHHHHHHHCCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcC
Confidence 34777878888 999888 44442 1 2233277887 3333 3 44433 2334
Q ss_pred CcceEEEEEEeeCCCCCcceeEEEEcC-----CCCcEEEEeecCCCc--------ccceeeeeEEEeeHH-HHHHHHHhh
Q psy17795 235 MAILVTVMATEATRQQSVYYGCIVRKQ-----QTSEISHYVEKPSTF--------VSTLVNCGVYLFSLD-IFQNIAAVF 300 (523)
Q Consensus 235 ~~~~~tv~~~~~~~~~~~~~g~v~~d~-----~~~~V~~~~ekp~~~--------~~~l~~~Giyif~~~-il~~l~~~~ 300 (523)
+.+|+...+. .....||++..|+ +.++|.+|.|||... ...++|+|+|+|+++ +++.|.+..
T Consensus 137 --~lvtlgi~p~--~p~t~YGyI~~~~~~~~~~~~~V~~f~EKP~~~~a~~~l~~g~~~wNsGif~~~~~~ll~~l~~~~ 212 (468)
T TIGR01479 137 --KLVTFGIVPT--HPETGYGYIRRGEPLAGEDVYQVQRFVEKPDLATAQAYLESGDYYWNSGMFLFRASRYLAELKKHA 212 (468)
T ss_pred --CEEEEEecCC--CCCCCceEEEeCCccCCCCceEEeEEEECCChHHHHHHHhcCCeEEEeeEEEEEHHHHHHHHHHHC
Confidence 5566555543 3457899999873 125899999999631 246899999999966 344554433
Q ss_pred ccccccccc--ccc-cc-------cCCCCCcccccchhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhc
Q psy17795 301 QSKQDEFYN--GNY-MV-------NGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYA 361 (523)
Q Consensus 301 ~~~~~e~~~--~~~-~~-------~~~~~~~~~~~~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~a 361 (523)
++....+.. ... +. ..-|..-+.+||...+ |.+..++++++.+..|.|+|+++++++.
T Consensus 213 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iSiDyav---mEk~~~v~vv~~~~~W~DvGsw~~l~~~ 280 (468)
T TIGR01479 213 PDIYEACEAAVEASEPDLDFIRLDKEAFEQCPSESIDYAV---MEKTADAVVVPMDAGWSDVGSWSALWEI 280 (468)
T ss_pred HHHHHHHHHHHHhccCCcccceeCHHHHhhCcCCCeeeee---eEcCCcEEEEeCCCCccccCCHHHHHHh
Confidence 221000000 000 00 0001122233332222 2333458999999999999999998764
No 57
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=99.85 E-value=5.3e-20 Score=179.76 Aligned_cols=214 Identities=14% Similarity=0.104 Sum_probs=147.8
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEE
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRY 173 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~ 173 (523)
+.+||||+| .|+||+ ||+|++++|+|||+|+++.+.++.++++|+|++++ +.+.+++.+ +++++.+
T Consensus 2 ~~~iIlA~g--~s~R~~------~K~l~~i~gkpll~~~l~~l~~~~~i~~ivvv~~~--~~i~~~~~~----~~~~~~~ 67 (239)
T cd02517 2 VIVVIPARY--ASSRLP------GKPLADIAGKPMIQHVYERAKKAKGLDEVVVATDD--ERIADAVES----FGGKVVM 67 (239)
T ss_pred EEEEEecCC--CCCCCC------CCCCcccCCcCHHHHHHHHHHhCCCCCEEEEECCc--HHHHHHHHH----cCCEEEE
Confidence 458999999 999995 59999999999999999999985589999998874 577777764 4555544
Q ss_pred EecccccchhhhhcccccccccCCCchhHHH-HhhcccCCcceEEEEc----cc-h-HH--HHHHHHhc-CCcceEEEEE
Q psy17795 174 LQEFWDIIHQQICISLYWTWYRNTRSTYGIY-RNSLHWVQEAVYFTLE----IR-S-DV--VILMHSLY-SMAILVTVMA 243 (523)
Q Consensus 174 ~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~-~~~i~~~~d~~~Lvl~----i~-~-D~--l~~~h~~~-~~~~~~tv~~ 243 (523)
..+.++.| +++... .+.+....+. ||+++ ++ . ++ +++.|... + .++++++
T Consensus 68 ~~~~~~~g-----------------t~~~~~~~~~~~~~~d~-vlv~~gD~Pli~~~~l~~l~~~~~~~~~--~~~~~~~ 127 (239)
T cd02517 68 TSPDHPSG-----------------TDRIAEVAEKLDADDDI-VVNVQGDEPLIPPEMIDQVVAALKDDPG--VDMATLA 127 (239)
T ss_pred cCcccCch-----------------hHHHHHHHHhcCCCCCE-EEEecCCCCCCCHHHHHHHHHHHHhCCC--CCEEEEE
Confidence 44444556 776444 4445422356 88877 22 1 22 66666654 5 6778877
Q ss_pred EeeCCCCC-cceeE--EEEcCCCCcEEEEeecCCC-------cccceeeeeEEEeeHHHHHHHHHhhccccccccccccc
Q psy17795 244 TEATRQQS-VYYGC--IVRKQQTSEISHYVEKPST-------FVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYM 313 (523)
Q Consensus 244 ~~~~~~~~-~~~g~--v~~d~~~~~V~~~~ekp~~-------~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~ 313 (523)
.+.+.+.. ..+|. +..|++ ++|+.|.++|.. +.+.++++|+|+|++++++.+.... ..++++
T Consensus 128 ~~~~~~~~~~~~~~~~v~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~~~~~~~~~---~~~~~~---- 199 (239)
T cd02517 128 TPISDEEELFNPNVVKVVLDKD-GYALYFSRSPIPYPRDSSEDFPYYKHIGIYAYRRDFLLRFAALP---PSPLEQ---- 199 (239)
T ss_pred EEcCCHHHccCCCCCEEEECCC-CCEEEecCCCCCCCCCCCCCCceeEEEEEEEECHHHHHHHHhCC---Cchhhh----
Confidence 77632110 03343 556766 899999876431 2367999999999999998875521 122222
Q ss_pred ccCCCCCcccccchhhhhh--hhhcCCc-EEEEEcchhHhhhccchhhhhccH
Q psy17795 314 VNGKDTDFNHIQLEKEIIM--PLAGSGK-AYVYQTSKWWSQLKSAGSAIYANR 363 (523)
Q Consensus 314 ~~~~~~~~~~~~~~~dil~--~li~~g~-v~~~~~~g~w~dIgt~~dyl~an~ 363 (523)
++.++ .++++|. ++++..+++|.+++++++|.++++
T Consensus 200 --------------~~~~~~~~~~~~g~~v~~~~~~~~w~~i~t~~dl~~a~~ 238 (239)
T cd02517 200 --------------IESLEQLRALENGYKIKVVETDHESIGVDTPEDLERVEA 238 (239)
T ss_pred --------------hhhHHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHHHHh
Confidence 23332 3456665 889888899999999999988764
No 58
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.84 E-value=3e-20 Score=173.79 Aligned_cols=224 Identities=14% Similarity=0.218 Sum_probs=147.5
Q ss_pred ccceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEc-cCChHHHHHHHHhhhhccCe
Q psy17795 91 SCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILG-YYPSADLQKFVLDMVQEYKI 169 (523)
Q Consensus 91 ~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~-~~~~~~i~~~l~~~~~~~~~ 169 (523)
|+-|+||||||| .|+||+| .+||+|+.++|+|+|+|++++|.+. |++++++|+ ++..+.+++++.+ ++.
T Consensus 1 ~~~~kavILAAG--~GsRlg~---~~PK~Lvev~gr~ii~~~i~~L~~~-gi~e~vvV~~g~~~~lve~~l~~----~~~ 70 (239)
T COG1213 1 MHPMKAVILAAG--FGSRLGP---DIPKALVEVGGREIIYRTIENLAKA-GITEFVVVTNGYRADLVEEFLKK----YPF 70 (239)
T ss_pred CCceeEEEEecc--cccccCC---CCCchhhhcCCeEeHHHHHHHHHHc-CCceEEEEeccchHHHHHHHHhc----CCc
Confidence 456899999999 9999999 9999999999999999999999996 999999999 8898889888876 344
Q ss_pred eEEEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc--cchHH-HHHHHHhcCCcceEEEEEE
Q psy17795 170 NIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE--IRSDV-VILMHSLYSMAILVTVMAT 244 (523)
Q Consensus 170 ~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~--i~~D~-l~~~h~~~~~~~~~tv~~~ 244 (523)
..+++.++.+ +-|||+.+|+ ++++. +. |++++ ++.+- +++...+.. +. ++.+.
T Consensus 71 ~~~iv~N~~y---------------~ktN~~~Sl~~akd~~~---~~-fii~~sD~vye~~~~e~l~~a~--~~-~li~d 128 (239)
T COG1213 71 NAKIVINSDY---------------EKTNTGYSLLLAKDYMD---GR-FILVMSDHVYEPSILERLLEAP--GE-GLIVD 128 (239)
T ss_pred ceEEEeCCCc---------------ccCCceeEEeeehhhhc---Cc-EEEEeCCEeecHHHHHHHHhCc--CC-cEEEe
Confidence 5555554322 1134788998 88887 34 77776 33222 444444432 22 33333
Q ss_pred eeCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCCCCcccc
Q psy17795 245 EATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHI 324 (523)
Q Consensus 245 ~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 324 (523)
..+......--..+.+++ |++..+.++-. ..+..++|++.|+.++|..+.+...+. .++
T Consensus 129 ~~~~~~~~~ea~kv~~e~-G~i~~igK~l~--e~~~e~iGi~~l~~~i~~~~~~~~~e~-~~~----------------- 187 (239)
T COG1213 129 RRPRYVGVEEATKVKDEG-GRIVEIGKDLT--EYDGEDIGIFILSDSIFEDTYELLVER-SEY----------------- 187 (239)
T ss_pred ccccccccCceeEEEecC-CEEehhcCCcc--cccceeeeeEEechHHHHHHHHHHhhh-hhH-----------------
Confidence 322111111123344555 99999987643 456689999999999887776543322 111
Q ss_pred cchhhhhhhhh-cCCcEEEEEcchhHhhhccchhhhhccHHHHhh
Q psy17795 325 QLEKEIIMPLA-GSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQL 368 (523)
Q Consensus 325 ~~~~dil~~li-~~g~v~~~~~~g~w~dIgt~~dyl~an~~~l~~ 368 (523)
++ .++.+... ....+.......+|++++||+|+.++.+.+...
T Consensus 188 ~~-~~~~~~~~~~~~~~di~~~g~~w~EVDtpeDl~~ar~~~~~~ 231 (239)
T COG1213 188 DY-REVEKEAGLPFTEVDIHVDGLFWMEVDTPEDLERARKYLVPN 231 (239)
T ss_pred HH-HHHHHHhCCceEEeeccccCceeEecCCHHHHHHHHHHHHHH
Confidence 11 23332211 111122111246899999999999998876643
No 59
>KOG3465|consensus
Probab=99.79 E-value=2.4e-20 Score=141.97 Aligned_cols=60 Identities=35% Similarity=0.599 Sum_probs=54.3
Q ss_pred cccccceeeec-----cCCCccEEEEEEEecCCeEEEEEecCceEEEEEcccchhhhhHHHhhhc
Q psy17795 3 YDHKNGYLKLK-----MTDDNARYSMKYDHKNGYLKLKMTDDNVCLIYKTEMSQDLKKIDNAKKH 62 (523)
Q Consensus 3 ~~~~~~~~~~~-----~~p~~~r~~~k~~~~~~~~~~k~t~~~~~~~~~~~~~~~~~~~e~~~~~ 62 (523)
|-+||-|..++ .+|.+|||+|||||++|.++||+|||..|+|||||++||+||||+++..
T Consensus 4 ~qtwdEF~~ase~L~~A~P~~~RlvmKYrh~~g~l~lkvtd~~~CLkYkTdqaqdlkKleki~s~ 68 (86)
T KOG3465|consen 4 LQTWDEFFTASESLYLANPEKTRLVMKYRHSKGSLVLKVTDNVECLKYKTDQAQDLKKLEKIASK 68 (86)
T ss_pred eeeHHHHHHHHHHHHhcCccceEEEEEEecCCCcEEEEeecceeeeeechhhhHHHHHHHHHHHH
Confidence 45788887664 5799999999999999999999999999999999999999999998654
No 60
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.79 E-value=7.6e-18 Score=164.41 Aligned_cols=214 Identities=15% Similarity=0.156 Sum_probs=142.2
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEE
Q psy17795 93 GWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIR 172 (523)
Q Consensus 93 ~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~ 172 (523)
++.+||||+| .++||. +|+|++++|+|||+|+++.+.++.++++|+|++++ +.+.+++.+ ++.++.
T Consensus 2 ~~~aiIlA~g--~s~R~~------~K~l~~i~GkPli~~~i~~l~~~~~~~~ivv~t~~--~~i~~~~~~----~~~~v~ 67 (238)
T PRK13368 2 KVVVVIPARY--GSSRLP------GKPLLDILGKPMIQHVYERAAQAAGVEEVYVATDD--QRIEDAVEA----FGGKVV 67 (238)
T ss_pred cEEEEEecCC--CCCCCC------CCccCccCCcCHHHHHHHHHHhcCCCCeEEEECCh--HHHHHHHHH----cCCeEE
Confidence 4569999999 899994 59999999999999999999985589999999865 567777765 455564
Q ss_pred EEecccccchhhhhcccccccccCCCchhHHH-HhhcccCCcceEEEEc----cch--HH--HHHHHHhcCCcceEEEEE
Q psy17795 173 YLQEFWDIIHQQICISLYWTWYRNTRSTYGIY-RNSLHWVQEAVYFTLE----IRS--DV--VILMHSLYSMAILVTVMA 243 (523)
Q Consensus 173 ~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~-~~~i~~~~d~~~Lvl~----i~~--D~--l~~~h~~~~~~~~~tv~~ 243 (523)
+..+....| ++.... .+.+. .+. |++++ ++. ++ +++.+...+ ...+++++
T Consensus 68 ~~~~~~~~g-----------------~~~~~~a~~~~~--~d~-~lv~~~D~P~i~~~~i~~l~~~~~~~~-~~~~~~~~ 126 (238)
T PRK13368 68 MTSDDHLSG-----------------TDRLAEVMLKIE--ADI-YINVQGDEPMIRPRDIDTLIQPMLDDP-SINVATLC 126 (238)
T ss_pred ecCccCCCc-----------------cHHHHHHHHhCC--CCE-EEEEcCCcCcCCHHHHHHHHHHHHHCC-CccceeEE
Confidence 444444444 554332 44443 355 78876 222 23 666665443 13555555
Q ss_pred EeeCC--C--CCcceeEEEEcCCCCcEEEEeecCCC------cccceeeeeEEEeeHHHHHHHHHhhccccccccccccc
Q psy17795 244 TEATR--Q--QSVYYGCIVRKQQTSEISHYVEKPST------FVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYM 313 (523)
Q Consensus 244 ~~~~~--~--~~~~~g~v~~d~~~~~V~~~~ekp~~------~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~ 313 (523)
.+.+. . ++..++. ..+++ |++..+.|+|.. ....+.++|+|+|++++|..+......
T Consensus 127 ~~~~~~~~~~~p~~~~~-~~~~~-g~v~~~~~~~~~~~~~~~~~~~~~n~giy~~~~~~l~~~~~~~~~----------- 193 (238)
T PRK13368 127 APISTEEEFESPNVVKV-VVDKN-GDALYFSRSPIPSRRDGESARYLKHVGIYAFRRDVLQQFSQLPET----------- 193 (238)
T ss_pred EEcCCHHHhcCcCCCEE-EECCC-CCEEEeeCCCCCCCCCCCCCceeEEEEEEEeCHHHHHHHHcCCCC-----------
Confidence 54431 1 2444554 44555 899999875421 124588999999999999876442110
Q ss_pred ccCCCCCcccccchh-hhhhhhhcCC-cEEEEEcchhHhhhccchhhhhccH
Q psy17795 314 VNGKDTDFNHIQLEK-EIIMPLAGSG-KAYVYQTSKWWSQLKSAGSAIYANR 363 (523)
Q Consensus 314 ~~~~~~~~~~~~~~~-dil~~li~~g-~v~~~~~~g~w~dIgt~~dyl~an~ 363 (523)
+..+++. +++ .++..| .++++..+++|.||++++||..++.
T Consensus 194 --------~~~~~~~~~~~-~~~~~g~~v~~~~~~~~~~DI~t~~Dl~~a~~ 236 (238)
T PRK13368 194 --------PLEQIESLEQL-RALEHGEKIRMVEVAATSIGVDTPEDLERVRA 236 (238)
T ss_pred --------hhhhhhhHHHH-HHHHCCCceEEEEeCCCCCCCCCHHHHHHHHH
Confidence 0111222 566 444445 4999998899999999999998865
No 61
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.78 E-value=2.7e-18 Score=165.72 Aligned_cols=167 Identities=22% Similarity=0.299 Sum_probs=127.7
Q ss_pred cccchhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhccHHHHhhhcccCCcccccCCCceEecCcEECCCCEECCCCE
Q psy17795 323 HIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQLYKTRHPERLQCSSQCKTIGDVYIHSSASVHPTAI 402 (523)
Q Consensus 323 ~~~~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~an~~~l~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~I~~~~~ 402 (523)
..+| +|.++.|++.+ ++..++||.|+ ++|+++++.+|.......+.. ........+++.++.|++++.
T Consensus 27 ~~~~-~~~~~~~~~~~---~~~~~gyW~Di---~~yl~an~diL~~~~~~~~~~-----~~~~~~~~~vg~~~~I~~~a~ 94 (231)
T TIGR03532 27 QVDF-PESIKKFGSGH---SGVLFGEWEDI---EPFIEANKDKIKDYRIENDRR-----NSAIPLLDLKNINARIEPGAI 94 (231)
T ss_pred cccc-chheEEEecCC---cEEEEEeHHHH---HHHHHHhHhhhcceEEeeccc-----ccccccccccccccEECCCCE
Confidence 4566 79999999876 77889999999 999999999997643111100 000111124567777777777
Q ss_pred ECCCcEECCCCEECCCCEEe-eeEECCCCEECCCCEEe-ceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCC
Q psy17795 403 VGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVL-NSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSN 480 (523)
Q Consensus 403 I~~~~~Ig~~~~I~~~~~I~-~s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~ 480 (523)
|.++++||++|.|++++.|+ +++||++|.|++++.|. +++||++|.||.++.|.+.. .. .....+.|+++++||++
T Consensus 95 I~g~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~-~~-~~~~~v~IGd~v~IG~g 172 (231)
T TIGR03532 95 IRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVI-EP-PSAKPVVIEDNVLIGAN 172 (231)
T ss_pred EeCCeEECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEcccc-cc-ccCCCeEECCCcEECCC
Confidence 77778888888888888774 48889999999999996 89999999999999997621 11 12345889999999999
Q ss_pred CeecCCcEEeCCCCEECCCcEEeC
Q psy17795 481 GKLNPSITILGDGVTVPGELIVLN 504 (523)
Q Consensus 481 ~~i~~g~~iIG~~~~Ig~~~~i~~ 504 (523)
++|.++ ++||++++|+++++|..
T Consensus 173 svI~~g-~~Ig~~~~IgagsvV~~ 195 (231)
T TIGR03532 173 AVILEG-VRVGKGAVVAAGAIVTE 195 (231)
T ss_pred CEEcCC-CEECCCCEECCCCEEcc
Confidence 999999 78899999999999843
No 62
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.74 E-value=4.2e-17 Score=172.40 Aligned_cols=240 Identities=17% Similarity=0.155 Sum_probs=152.2
Q ss_pred cceeEEEEecCCCCCCcCCCCCCC-CCcccceeCC-cchHHHHHHHHhcCCCccEEEEEccC-ChHHHHHHHHhhhhccC
Q psy17795 92 CGWTTNDTTPGPLKGTRFRPLSLD-SPKPLFPVAG-LPMIQHHIEACVQVPNLKEIIILGYY-PSADLQKFVLDMVQEYK 168 (523)
Q Consensus 92 ~~m~~iila~g~g~g~R~~~lT~~-~pK~ll~i~g-~pli~~~l~~~~~~~g~~~i~vv~~~-~~~~i~~~l~~~~~~~~ 168 (523)
|.|.+|||||| .||||+|+|.. .||||+++.| +|||+++++++... ++.+.++|++. +.+.+++.+.+...
T Consensus 4 ~~~~~vIlaGG--~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~-~~~~~iivt~~~~~~~v~~ql~~~~~--- 77 (478)
T PRK15460 4 SKLYPVVMAGG--SGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGV-ECESPVVICNEQHRFIVAEQLRQLNK--- 77 (478)
T ss_pred CceEEEEECCC--CccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhC-CCCCcEEEeCHHHHHHHHHHHHhcCC---
Confidence 55789999999 99999999997 7999999965 79999999999886 77777777776 56667777765210
Q ss_pred eeEEEEecccccchhhhhcccccccccCCCchhHHH--Hhhcc-c--CCcceEEEEc---cchHH------HHHHHH--h
Q psy17795 169 INIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLH-W--VQEAVYFTLE---IRSDV------VILMHS--L 232 (523)
Q Consensus 169 ~~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~-~--~~d~~~Lvl~---i~~D~------l~~~h~--~ 232 (523)
..-.++.++...+ ||.|+. ..++. . .++.+++|++ ++.|. +.+... +
T Consensus 78 ~~~~ii~EP~~rn-----------------TApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~ 140 (478)
T PRK15460 78 LTENIILEPAGRN-----------------TAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAE 140 (478)
T ss_pred ccccEEecCCCCC-----------------hHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHh
Confidence 1124566665555 888877 32332 1 1244477777 44442 222211 1
Q ss_pred cCCcceEEEEEEeeCCCCCcceeEEEEcCCC--------CcEEEEeecCCC--------cccceeeeeEEEeeHH-HHHH
Q psy17795 233 YSMAILVTVMATEATRQQSVYYGCIVRKQQT--------SEISHYVEKPST--------FVSTLVNCGVYLFSLD-IFQN 295 (523)
Q Consensus 233 ~~~~~~~tv~~~~~~~~~~~~~g~v~~d~~~--------~~V~~~~ekp~~--------~~~~l~~~Giyif~~~-il~~ 295 (523)
.+ .-+|+-..+. ...+.||++..++.. .+|.+|.|||+. ...+++|+|+|+|+.+ +++.
T Consensus 141 ~~--~lvt~GI~Pt--~PeTgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~yl~~G~y~WNsGiF~~~a~~~l~~ 216 (478)
T PRK15460 141 AG--KLVTFGIVPD--LPETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETAQAYVASGEYYWNSGMFLFRAGRYLEE 216 (478)
T ss_pred cC--CEEEEecCCC--CCCCCCCeEEeCCccccccccCceEeeEEEeCCCHHHHHHHHHcCCEEEecceeheeHHHHHHH
Confidence 23 4444444432 234789999875421 269999999973 2457999999999987 5666
Q ss_pred HHHhhcccc----cccc--ccccc----ccCCCCCcccccchhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhc
Q psy17795 296 IAAVFQSKQ----DEFY--NGNYM----VNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYA 361 (523)
Q Consensus 296 l~~~~~~~~----~e~~--~~~~~----~~~~~~~~~~~~~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~a 361 (523)
|++..+... .-+. ..... ....|..-+.+||...++ .+..++.+.+.+--|.|+|++.++.+.
T Consensus 217 ~~~~~P~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iSiDyavm---Ek~~~v~vvp~~f~WsDvGsW~sl~~~ 289 (478)
T PRK15460 217 LKKYRPDILDACEKAMSAVDPDLDFIRVDEEAFLACPEESVDYAVM---ERTADAVVVPMDAGWSDVGSWSSLWEI 289 (478)
T ss_pred HHHHCHHHHHHHHHHHHhccCcccceeeCHHHHhhCcCcchhhhhh---cccCceEEEecCCCccccCCHHHHHHh
Confidence 665443210 0000 00000 011133344555544443 344458888999999999998886653
No 63
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.73 E-value=1.2e-16 Score=155.74 Aligned_cols=240 Identities=18% Similarity=0.193 Sum_probs=151.4
Q ss_pred eeEEEEecCCCCCCcCCCCCC-CCCcccceeCC-cchHHHHHHHHhcCCCccEEEEEccC-ChHHHHHHHHhhhhccCee
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSL-DSPKPLFPVAG-LPMIQHHIEACVQVPNLKEIIILGYY-PSADLQKFVLDMVQEYKIN 170 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~-~~pK~ll~i~g-~pli~~~l~~~~~~~g~~~i~vv~~~-~~~~i~~~l~~~~~~~~~~ 170 (523)
|..+||||| .||||+||+. ..||||+++.| ++|++.+++++...++.+++++|++. +...+++.+.+... +..
T Consensus 2 ~~pvIlaGG--~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e~~~--~~~ 77 (333)
T COG0836 2 MIPVILAGG--SGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPEIDI--ENA 77 (333)
T ss_pred ceeEEEeCC--CccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhhhhh--ccc
Confidence 568999999 9999999997 59999999965 89999999999986688999999987 55566666665211 111
Q ss_pred EEEEecccccchhhhhcccccccccCCCchhHHH---HhhcccCCcceEEEEc---cchHH--HHHHH------HhcCCc
Q psy17795 171 IRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY---RNSLHWVQEAVYFTLE---IRSDV--VILMH------SLYSMA 236 (523)
Q Consensus 171 i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~---~~~i~~~~d~~~Lvl~---i~~D~--l~~~h------~~~~~~ 236 (523)
-.++.++.-.. ||-|+. .......+|.+++|++ .+.|. +.+.. .+.+
T Consensus 78 ~~illEP~gRn-----------------TApAIA~aa~~~~~~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g-- 138 (333)
T COG0836 78 AGIILEPEGRN-----------------TAPAIALAALSATAEGGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEG-- 138 (333)
T ss_pred cceEeccCCCC-----------------cHHHHHHHHHHHHHhCCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcC--
Confidence 11455543333 999988 2222332354467776 44443 22211 2233
Q ss_pred ceEEEEEEeeCCCCCcceeEEEEcC-----CCCcEEEEeecCCC--------cccceeeeeEEEeeHH-HHHHHHHhhcc
Q psy17795 237 ILVTVMATEATRQQSVYYGCIVRKQ-----QTSEISHYVEKPST--------FVSTLVNCGVYLFSLD-IFQNIAAVFQS 302 (523)
Q Consensus 237 ~~~tv~~~~~~~~~~~~~g~v~~d~-----~~~~V~~~~ekp~~--------~~~~l~~~Giyif~~~-il~~l~~~~~~ 302 (523)
.-+|+-..+. .....||++...+ ...+|.+|.|||+. ....++|+|+|+|+.+ +++.++...+.
T Consensus 139 ~lVTfGI~Pt--~PeTGYGYIe~G~~~~~~~~~~V~~FvEKPd~etA~~yv~sG~y~WNSGmF~Fra~~~l~e~~~~~P~ 216 (333)
T COG0836 139 GIVTFGIPPT--RPETGYGYIETGESIAENGVYKVDRFVEKPDLETAKKYVESGEYLWNSGMFLFRASVFLEELKKHQPD 216 (333)
T ss_pred CEEEEecCCC--CCccCcceeecCcccccCCceEeeeeeeCCCHHHHHHHHHcCceEeeccceEEEHHHHHHHHHhhCcH
Confidence 3444444432 2347899998633 22479999999973 2457999999999987 46666654332
Q ss_pred c----ccccccc-ccc----ccCCCCCcccccchhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhc
Q psy17795 303 K----QDEFYNG-NYM----VNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYA 361 (523)
Q Consensus 303 ~----~~e~~~~-~~~----~~~~~~~~~~~~~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~a 361 (523)
. ...+... ++. ....|...+.+|+...+ |.+..++.+.+.+-.|-|+|++.++++.
T Consensus 217 i~~~~~~~~~~~~d~~~~~l~~e~f~~~p~iSIDYAi---MEkt~~~aVVp~~f~WsDlGsW~Al~~~ 281 (333)
T COG0836 217 IYCAAEKAFEAAVDENSVRLDNEAYEEIPAISIDYAI---MEKTSKAAVVPADFGWSDLGSWHALWEV 281 (333)
T ss_pred HHHHHHHHHhcccccchhcccHHHHhhCcccchhHHH---HhhhcceEEEecCCCcccccCHHHHHHH
Confidence 1 0000000 000 01113334445554444 3455668999999999999998775543
No 64
>PLN02917 CMP-KDO synthetase
Probab=99.72 E-value=4e-16 Score=156.31 Aligned_cols=232 Identities=11% Similarity=0.069 Sum_probs=149.7
Q ss_pred CCCccccc--cccceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHH
Q psy17795 82 FPGLTQTF--VSCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKF 159 (523)
Q Consensus 82 ~~~~~~~~--~~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~ 159 (523)
||.|.++- ..|.+.+||||+| .++||. +|+|++++|+|||+|+++.+.+...++.|+|. ++.+++.++
T Consensus 34 ~~~~~~~~~~~~~~i~aIIpA~G--~SsR~~------~K~L~~i~GkPLL~~vi~~a~~~~~~~~VVV~--~~~e~I~~~ 103 (293)
T PLN02917 34 AGAYLRRSRKFRSRVVGIIPARF--ASSRFE------GKPLVHILGKPMIQRTWERAKLATTLDHIVVA--TDDERIAEC 103 (293)
T ss_pred CchhhhhccccCCcEEEEEecCC--CCCCCC------CCCeeeECCEEHHHHHHHHHHcCCCCCEEEEE--CChHHHHHH
Confidence 56665444 4456679999999 999994 59999999999999999999976344554333 456678877
Q ss_pred HHhhhhccCeeEEEEecccccchhhhhcccccccccCCCchhHHH-HhhcccCCcceEEEEc----cc-hHH---HHHHH
Q psy17795 160 VLDMVQEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY-RNSLHWVQEAVYFTLE----IR-SDV---VILMH 230 (523)
Q Consensus 160 l~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~-~~~i~~~~d~~~Lvl~----i~-~D~---l~~~h 230 (523)
+.+ +++.+....+.++.| |+++.. .+.+....|. +++++ ++ .+. +++.+
T Consensus 104 ~~~----~~v~vi~~~~~~~~G-----------------T~~~~~a~~~l~~~~d~-Vlil~gD~PlI~~~tI~~li~~~ 161 (293)
T PLN02917 104 CRG----FGADVIMTSESCRNG-----------------TERCNEALKKLEKKYDI-VVNIQGDEPLIEPEIIDGVVKAL 161 (293)
T ss_pred HHH----cCCEEEeCCcccCCc-----------------hHHHHHHHHhccCCCCE-EEEecCCcCCCCHHHHHHHHHHH
Confidence 754 344442223344455 666644 5566422355 77776 22 222 56655
Q ss_pred HhcCCcceEEEEEEeeCCCCCcceeEEE--EcCCCCcEEEEeec--C---C----CcccceeeeeEEEeeHHHHHHHHHh
Q psy17795 231 SLYSMAILVTVMATEATRQQSVYYGCIV--RKQQTSEISHYVEK--P---S----TFVSTLVNCGVYLFSLDIFQNIAAV 299 (523)
Q Consensus 231 ~~~~~~~~~tv~~~~~~~~~~~~~g~v~--~d~~~~~V~~~~ek--p---~----~~~~~l~~~Giyif~~~il~~l~~~ 299 (523)
+... +..++.++.....+++..||.+. .|++ |+++.|..+ | + +....+.++|+|.|+.+.|..+.+.
T Consensus 162 ~~~~-~~iv~t~~~~~~~~~~~~ygrv~vv~~~~-g~alyfsr~~Ipe~kd~~~~~~~i~~~n~Giy~f~~~~L~~l~~l 239 (293)
T PLN02917 162 QAAP-DAVFSTAVTSLKPEDASDPNRVKCVVDNQ-GYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDAKFLKIYPEL 239 (293)
T ss_pred HhcC-CceEEEEeeecCHHHhcCCCceEEEECCC-CeEEEeecCcCCcCCCcccccccceEEEEEEEEeCHHHHHHHHcC
Confidence 4322 12222222222335678999885 6766 886755432 1 1 1233588999999999988877665
Q ss_pred hccc-ccccccccccccCCCCCcccccchhhhhhhhhcCCc-EEEEEcchhHhhhccchhhhhccHHHHh
Q psy17795 300 FQSK-QDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSGK-AYVYQTSKWWSQLKSAGSAIYANRHYLQ 367 (523)
Q Consensus 300 ~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~dil~~li~~g~-v~~~~~~g~w~dIgt~~dyl~an~~~l~ 367 (523)
.+.+ ++|||+ +++. +.++|. +.++..+.....++|++|+-.+...+.+
T Consensus 240 ~~~n~e~e~yL------------------tdl~--~le~G~~i~~~~~~~~~~GVnt~~dL~~ae~~~~~ 289 (293)
T PLN02917 240 PPTPLQLEEDL------------------EQLK--VLENGYKMKVIKVDHEAHGVDTPEDVEKIEALMRE 289 (293)
T ss_pred CCCcccchhcc------------------HHHH--HHhCCCceEEEEeCCCCCCCCCHHHHHHHHHHHHH
Confidence 5544 778887 5665 445664 7777665455589999999998887643
No 65
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=99.69 E-value=7.4e-16 Score=138.40 Aligned_cols=165 Identities=19% Similarity=0.346 Sum_probs=111.3
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEE
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRY 173 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~ 173 (523)
|+||||||| .|||+.|||..+||+|+.+.|+|||+++++.|.+. ||++|+||++|.++++ +|+.+ ++++.+.+
T Consensus 1 ~nAIIlAAG--~gsR~~plT~~tpK~LlkV~g~plIErqI~~L~e~-gI~dI~IVvGYlkE~F-eYLkd---Ky~vtLvy 73 (231)
T COG4750 1 MNAIILAAG--LGSRFVPLTQSTPKSLLKVNGEPLIERQIEQLREA-GIDDITIVVGYLKEQF-EYLKD---KYDVTLVY 73 (231)
T ss_pred CceEEEecc--cccccccccccCChHHHHhcCcccHHHHHHHHHHC-CCceEEEEeeehHHHH-HHHHH---hcCeEEEe
Confidence 579999999 99999999999999999999999999999999996 9999999999988777 56765 47777766
Q ss_pred EecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEccchHH--HHHHHHhcCCcceEEEEEEeeCCC
Q psy17795 174 LQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLEIRSDV--VILMHSLYSMAILVTVMATEATRQ 249 (523)
Q Consensus 174 ~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~i~~D~--l~~~h~~~~~~~~~tv~~~~~~~~ 249 (523)
........ +..+++ ++++.+ ..|+. .|. ..+.++.....+..+-+....
T Consensus 74 N~kY~~yN-----------------n~ySlyla~d~l~n-----tYiid--sDnyl~kNif~~~~~~S~Yfav~~~~--- 126 (231)
T COG4750 74 NPKYREYN-----------------NIYSLYLARDFLNN-----TYIID--SDNYLTKNIFLTKESHSKYFAVYRSG--- 126 (231)
T ss_pred CchHHhhh-----------------hHHHHHHHHHHhcc-----cEEec--cchHhhhhhhhcCcccceEEEEEecC---
Confidence 54433333 667777 888872 23322 343 222233222012222222211
Q ss_pred CCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHH
Q psy17795 250 QSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIA 297 (523)
Q Consensus 250 ~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~ 297 (523)
....| .+..+.+ ++|+++.-. ....++-+|+..|+.+.-+.+.
T Consensus 127 ~tnEw-~l~~~~~-~ki~~v~Ig---g~~~~imsG~sff~~~~~~ki~ 169 (231)
T COG4750 127 KTNEW-LLIYNSD-GKITRVDIG---GLNGYIMSGISFFDAQFSNKIK 169 (231)
T ss_pred CCcee-EEEEcCC-CcEEEEEec---CcccceEeeeeeecchhHHHHH
Confidence 11122 2345555 888887543 2456788899999976544443
No 66
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.68 E-value=2.5e-16 Score=141.86 Aligned_cols=119 Identities=22% Similarity=0.318 Sum_probs=96.8
Q ss_pred ECCCCEECCCCEECCCcEECCCCEECCCCEEee----eEECCCCEECCCCEEe-----ceEECCCCEECCCcEEcCCCCC
Q psy17795 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE----SIILQGASIGNHSLVL-----NSIVGRNSKVGNWSRVEGTPCD 461 (523)
Q Consensus 391 i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~----s~Ig~~~~Ig~~~~I~-----~~iIg~~~~Ig~~~~i~~~~~~ 461 (523)
|++.++|.|++.|-+++.||+++.|+++++|+. ..||++|.|.++|+|+ .+.||++|+||++|.|+|
T Consensus 14 i~~~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHG---- 89 (176)
T COG0663 14 IDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHG---- 89 (176)
T ss_pred CCCceEECCCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEE----
Confidence 444455555555556666666666666666643 7899999999999997 689999999999999987
Q ss_pred CCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCCcEeCCCCCCcc
Q psy17795 462 PNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKELTRSFKNEI 521 (523)
Q Consensus 462 ~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i~~~~~~~~ 521 (523)
++|+++++||-+++|.+| +.||++|.||+|+.|....+.|...+--++|+..
T Consensus 90 -------c~Ig~~~lIGmgA~vldg-a~IG~~~iVgAgalV~~~k~~p~~~L~~G~Pak~ 141 (176)
T COG0663 90 -------CTIGDNVLIGMGATVLDG-AVIGDGSIVGAGALVTPGKEIPGGSLVVGSPAKV 141 (176)
T ss_pred -------eEECCCcEEecCceEeCC-cEECCCcEEccCCcccCCcCCCCCeEeecCccee
Confidence 588999999999999999 9999999999999998888888888888888654
No 67
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.67 E-value=2e-15 Score=138.69 Aligned_cols=76 Identities=26% Similarity=0.439 Sum_probs=45.6
Q ss_pred CceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcC
Q psy17795 382 QCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEG 457 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~ 457 (523)
++.+.++++|++++.|++++.|+++++||++|.|++++.|.+++|++++.|++++.+.+++||+++.|++++.+.+
T Consensus 29 ~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~~~~I~~~~~i~~ 104 (163)
T cd05636 29 GAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGENVNLGAGTITAN 104 (163)
T ss_pred CCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecCEECCCCEECCCcEEcc
Confidence 4445555555555555555555555666666666666666666666666666666666666666666666666644
No 68
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.66 E-value=2.1e-15 Score=148.55 Aligned_cols=75 Identities=24% Similarity=0.361 Sum_probs=37.2
Q ss_pred CceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEe-eeEECCCCEECCCCEEe-------------ceEECCCC
Q psy17795 382 QCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVL-------------NSIVGRNS 447 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~s~Ig~~~~Ig~~~~I~-------------~~iIg~~~ 447 (523)
++.|++.+.|++++.|+|++.|++++.||++|.|+++|+|. ++.||++|.|+++++|. +++||++|
T Consensus 5 ~a~I~~~a~ig~~~~I~p~~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~ 84 (254)
T cd03351 5 TAIVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNN 84 (254)
T ss_pred CCEECCCCEECCCCEECCCcEECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCC
Confidence 34444555555555555555555555555555555555443 24555555555555553 34455555
Q ss_pred EECCCcEEc
Q psy17795 448 KVGNWSRVE 456 (523)
Q Consensus 448 ~Ig~~~~i~ 456 (523)
.|+++|.|.
T Consensus 85 ~Ig~~~~I~ 93 (254)
T cd03351 85 TIREFVTIH 93 (254)
T ss_pred EECCccEEe
Confidence 555555543
No 69
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.66 E-value=1e-15 Score=150.62 Aligned_cols=136 Identities=18% Similarity=0.257 Sum_probs=85.8
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEee-eEECCCCEECCCCEEe-ceEECCCCEECCCcEEcCC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE-SIILQGASIGNHSLVL-NSIVGRNSKVGNWSRVEGT 458 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~-s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i~~~ 458 (523)
+.+.+++.+.+++++.|+++++|++++.||++|+|+++|+|+. +.||++|.|..+++|. ++.||++|.|++|++|+..
T Consensus 104 ~~A~i~~~A~i~~~~~ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~d 183 (338)
T COG1044 104 PTAVIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGAD 183 (338)
T ss_pred ccccccCcCccCCCCccCCCeEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEEccC
Confidence 4556666666666666666666666666666666666666643 6667777777777776 4777777777777777654
Q ss_pred CCCCC---------CCCCceecCCCCeecCCCeecCC---cEEeCCCCEECCCcEE-eCeEEcCCcEeCCC
Q psy17795 459 PCDPN---------PNKAFAKMDNPPLFNSNGKLNPS---ITILGDGVTVPGELIV-LNSIVLPYKELTRS 516 (523)
Q Consensus 459 ~~~~~---------~~~~~v~I~~~~~ig~~~~i~~g---~~iIG~~~~Ig~~~~i-~~~~v~~~~~i~~~ 516 (523)
.++.. ...++|.|+|++.||++.+|..+ -|+||+++.|...+.| .|+.|+.++.|...
T Consensus 184 gFg~a~~~~g~~Ki~q~g~V~Igd~VeIGanT~Idrga~~dTvIg~~~kIdN~vqIaHnv~IG~~~~I~~~ 254 (338)
T COG1044 184 GFGYAGTAIGWVKIPQIGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIGHNVRIGEHCIIAGQ 254 (338)
T ss_pred ccccccccCCceEcceeceEEECCceEEcccceeccccccCceecCCcEEcceeEEccccEECCCcEEecc
Confidence 43321 12356777888888887777654 2555666665555555 55555555555443
No 70
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.65 E-value=2.7e-15 Score=137.80 Aligned_cols=126 Identities=23% Similarity=0.258 Sum_probs=107.7
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEe-eeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTP 459 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~ 459 (523)
+++.+.++++|++++.|++++.|.++++||++|.|++++.|+ +++||++|.|++++.|.+++|++++.|++++.+.++
T Consensus 10 ~~~~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~s- 88 (163)
T cd05636 10 EGVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDS- 88 (163)
T ss_pred CCCEECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecC-
Confidence 467888999999999999999999999999999999999997 599999999999999999999999999999998653
Q ss_pred CCCCCCCCceecCCCCeecCCCeecC-----------------------CcEEeCCCCEECCCcEE-eCeEEcCCcEeCC
Q psy17795 460 CDPNPNKAFAKMDNPPLFNSNGKLNP-----------------------SITILGDGVTVPGELIV-LNSIVLPYKELTR 515 (523)
Q Consensus 460 ~~~~~~~~~v~I~~~~~ig~~~~i~~-----------------------g~~iIG~~~~Ig~~~~i-~~~~v~~~~~i~~ 515 (523)
.|++++.|++++.+.. -.++||+++.||.+++| .+..|++++.|.+
T Consensus 89 ----------iIg~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g~~ig~~~~i~a 158 (163)
T cd05636 89 ----------VLGENVNLGAGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPGVKIGPGSWVYP 158 (163)
T ss_pred ----------EECCCCEECCCcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCCcEECCCCEECC
Confidence 4666677776665532 12788999999999888 6888888888876
Q ss_pred CC
Q psy17795 516 SF 517 (523)
Q Consensus 516 ~~ 517 (523)
+.
T Consensus 159 gs 160 (163)
T cd05636 159 GC 160 (163)
T ss_pred Cc
Confidence 53
No 71
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.64 E-value=3.1e-15 Score=146.59 Aligned_cols=141 Identities=16% Similarity=0.210 Sum_probs=95.7
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEe-eeEECCCCEECCCCEEe-------------ceEECCC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVL-------------NSIVGRN 446 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~s~Ig~~~~Ig~~~~I~-------------~~iIg~~ 446 (523)
|++.|++++.|++++.|+|++.|++++.||++|.|+++++|. ++.||++|.|++++.|. .++||++
T Consensus 4 p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~~ 83 (255)
T PRK12461 4 PTAVIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGDR 83 (255)
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEECCc
Confidence 567788888888888888888888888888888888888885 58888888888888885 4678888
Q ss_pred CEECCCcEEcCCCCC-------C-------CCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-e------Ce
Q psy17795 447 SKVGNWSRVEGTPCD-------P-------NPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV-L------NS 505 (523)
Q Consensus 447 ~~Ig~~~~i~~~~~~-------~-------~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-~------~~ 505 (523)
+.|+++++|...... . ......+.||++++++.++.+..+ +.||++|+|+.++.| . ++
T Consensus 84 ~~I~e~vtI~~gt~~g~~t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~-v~Igd~a~Ig~~a~V~~~~~IG~~a 162 (255)
T PRK12461 84 NVIREGVTIHRGTKGGGVTRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGH-VTVGDRAIISGNCLVHQFCRIGALA 162 (255)
T ss_pred eEECCccEEecCcccCCcEEEcccceeccCcEECCCCEECCCcEECCCCccCCc-eEECCCeEEeCCCEECCCCEECCCc
Confidence 888888888543210 0 001123344444444444444444 566777777776665 2 34
Q ss_pred EEcCCcEeCCCCCCccc
Q psy17795 506 IVLPYKELTRSFKNEIL 522 (523)
Q Consensus 506 ~v~~~~~i~~~~~~~~i 522 (523)
.|++++.|++++|...+
T Consensus 163 ~Vg~gs~V~~dVpp~~i 179 (255)
T PRK12461 163 MMAGGSRISKDVPPYCM 179 (255)
T ss_pred EECCCceEeccCCCCeE
Confidence 56666677777776544
No 72
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.64 E-value=3e-15 Score=147.45 Aligned_cols=137 Identities=19% Similarity=0.245 Sum_probs=69.5
Q ss_pred CceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEe-eeEECCCCEECCCCEEe-------------ceEECCCC
Q psy17795 382 QCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVL-------------NSIVGRNS 447 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~s~Ig~~~~Ig~~~~I~-------------~~iIg~~~ 447 (523)
++.|++.+.|++++.|+|++.|++++.||++|.|+++|.|. +++||++|.|+++++|. +++||++|
T Consensus 4 ~a~I~~~a~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~ 83 (254)
T TIGR01852 4 TAIIEPGAEIGENVEIGPFCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNN 83 (254)
T ss_pred CCEeCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCC
Confidence 44555555555555555555555555555555555555553 35555555555555554 35555555
Q ss_pred EECCCcEEcCCCCC--------CCC-------CCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-eCe------
Q psy17795 448 KVGNWSRVEGTPCD--------PNP-------NKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV-LNS------ 505 (523)
Q Consensus 448 ~Ig~~~~i~~~~~~--------~~~-------~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-~~~------ 505 (523)
.|+++|+|...... .+. ....+.|+++++++.++.+..+ ++||++|+|++++.| .+.
T Consensus 84 ~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~-~~Igd~~~Ig~~~~i~~~v~Ig~~~ 162 (254)
T TIGR01852 84 TIREFVTINRGTASGGGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGH-VEVGDYAIIGGLVAVHQFVRIGRYA 162 (254)
T ss_pred EECCCCEECCcccCCCCcEEECCCCEECCCCEEccCCEECCCCEECCCCEECCC-cEECCCcEEeccCEECCCcEECCCC
Confidence 55555555432110 000 0012445555555555555555 555666666666655 333
Q ss_pred EEcCCcEeCCCCCC
Q psy17795 506 IVLPYKELTRSFKN 519 (523)
Q Consensus 506 ~v~~~~~i~~~~~~ 519 (523)
+|++++.|.+++|+
T Consensus 163 ~Ig~~s~V~~~i~~ 176 (254)
T TIGR01852 163 MIGGLSAVSKDVPP 176 (254)
T ss_pred EEeeeeeEeeecCC
Confidence 34444444445553
No 73
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.64 E-value=7.2e-15 Score=144.81 Aligned_cols=137 Identities=16% Similarity=0.194 Sum_probs=106.5
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEe-------------eeEECCCCEECCCCEEe--------
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-------------ESIILQGASIGNHSLVL-------- 439 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-------------~s~Ig~~~~Ig~~~~I~-------- 439 (523)
+.+.+.+++.|++++.|++++.|.++++||++|+|+++++|+ .++||++|.|+++|+|.
T Consensus 21 ~~~~I~~~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~ 100 (254)
T TIGR01852 21 PFCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASGGG 100 (254)
T ss_pred CCCEECCCCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCcccCCCC
Confidence 566777777788888888888888889999999999999996 58899999999999996
Q ss_pred ceEECCCCEECCCcEEc-CCCCCC-------CCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCCc
Q psy17795 440 NSIVGRNSKVGNWSRVE-GTPCDP-------NPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYK 511 (523)
Q Consensus 440 ~~iIg~~~~Ig~~~~i~-~~~~~~-------~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~ 511 (523)
.++||+++.|+.++.|. ++.++. -.....++|+++++||.++.+.++ +.||++++|+++++|... |.+++
T Consensus 101 ~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~-v~Ig~~~~Ig~~s~V~~~-i~~~~ 178 (254)
T TIGR01852 101 VTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQF-VRIGRYAMIGGLSAVSKD-VPPYG 178 (254)
T ss_pred cEEECCCCEECCCCEEccCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCC-cEECCCCEEeeeeeEeee-cCCCc
Confidence 46888888887777773 222222 122456889999999999999888 777999999999999654 67777
Q ss_pred EeCCCCCCc
Q psy17795 512 ELTRSFKNE 520 (523)
Q Consensus 512 ~i~~~~~~~ 520 (523)
.+.. .|+.
T Consensus 179 ~~~G-~pa~ 186 (254)
T TIGR01852 179 LVEG-NRAR 186 (254)
T ss_pred EEec-CcCe
Confidence 7753 3543
No 74
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.64 E-value=6.4e-15 Score=149.52 Aligned_cols=135 Identities=17% Similarity=0.294 Sum_probs=104.9
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEe-eeEECCCCEECCCCEEe-ceEECCCCEECCCcEEcCC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVL-NSIVGRNSKVGNWSRVEGT 458 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i~~~ 458 (523)
|++.+++++.|++++.|++++.|++++.||++|.|++++.|+ +++||++|.|+++++|. +++||++|.|+++|+|+..
T Consensus 96 p~a~i~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vIg~~ 175 (324)
T TIGR01853 96 PTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVIGSD 175 (324)
T ss_pred CCCEeCCCcEECCCCEECCCcEEccCcEECCcEEECCCCEECCcceeCCCceECCCcEECCCCEECCCCEECCCcEECCC
Confidence 688899999999999999999999999999999999999994 59999999999999998 8999999999999999754
Q ss_pred CCCCC----------CCCCceecCCCCeecCCCeecC---CcEEeCCCCEECCCcEE-eCeEEcCCcEeCC
Q psy17795 459 PCDPN----------PNKAFAKMDNPPLFNSNGKLNP---SITILGDGVTVPGELIV-LNSIVLPYKELTR 515 (523)
Q Consensus 459 ~~~~~----------~~~~~v~I~~~~~ig~~~~i~~---g~~iIG~~~~Ig~~~~i-~~~~v~~~~~i~~ 515 (523)
.++.. ...+.+.|++++.||++++|.. +.++||+++.|+..+.| .++.|++++.|..
T Consensus 176 gfg~~~~~~~~~~~i~~~G~vvIgd~v~IGa~~~I~r~~~~~t~Ig~~~~I~n~v~I~~~v~IG~~~~I~~ 246 (324)
T TIGR01853 176 GFGYAHTANGGHVKIPQIGRVIIEDDVEIGANTTIDRGAFDDTIIGEGTKIDNLVQIAHNCRIGENCIIVA 246 (324)
T ss_pred CccceeccCCcceecCccceEEECCCcEECCCCEEecCCcCcceecCCcEEccCcEECCCCEECCCcEECC
Confidence 32221 1124688999999999887742 22566666666666666 5556665555544
No 75
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.64 E-value=4.4e-15 Score=146.28 Aligned_cols=121 Identities=13% Similarity=0.115 Sum_probs=77.7
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEe-------------eeEECCCCEECCCCEEe--------
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-------------ESIILQGASIGNHSLVL-------- 439 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-------------~s~Ig~~~~Ig~~~~I~-------- 439 (523)
+.+.|.+++.|++++.|++++.|++++.||++|.|+++++|+ .++||++|.|+++|+|.
T Consensus 22 p~~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~~~~~~~~ 101 (254)
T cd03351 22 PFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHRGTAQGGG 101 (254)
T ss_pred CCcEECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCccEEeccccCCCC
Confidence 456666777777777777777777788888888888888885 57899999999999886
Q ss_pred ceEECCCCEECCCcEEcCC-CCCC-------CCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE
Q psy17795 440 NSIVGRNSKVGNWSRVEGT-PCDP-------NPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV 502 (523)
Q Consensus 440 ~~iIg~~~~Ig~~~~i~~~-~~~~-------~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i 502 (523)
.++||++|.|++++.|... .++. -....+++|+++++|+.++.|.++ +.||++++|+++++|
T Consensus 102 ~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~-v~Ig~~~~Ig~~s~V 171 (254)
T cd03351 102 VTRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQF-CRIGRHAMVGGGSGV 171 (254)
T ss_pred ceEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCC-cEECCCCEECcCCEE
Confidence 3788888888887777431 1110 001123444444555544444444 333555555555544
No 76
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.62 E-value=6.1e-15 Score=145.69 Aligned_cols=78 Identities=23% Similarity=0.370 Sum_probs=58.5
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEe-eeEECCCCEECCCCEEe-------------ceEECCC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVL-------------NSIVGRN 446 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~s~Ig~~~~Ig~~~~I~-------------~~iIg~~ 446 (523)
|++.|++.+.|++++.|+|++.|++++.||++|.|+++++|. +++||++|.|++++.|. .++||++
T Consensus 7 p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~~ 86 (262)
T PRK05289 7 PTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDN 86 (262)
T ss_pred CCCEECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEECCC
Confidence 567777777777777777777777777777777777777774 47778888888877775 3778888
Q ss_pred CEECCCcEEcCC
Q psy17795 447 SKVGNWSRVEGT 458 (523)
Q Consensus 447 ~~Ig~~~~i~~~ 458 (523)
|.|+++|+|...
T Consensus 87 ~~I~e~~~I~~~ 98 (262)
T PRK05289 87 NTIREFVTINRG 98 (262)
T ss_pred CEECCCeEEecc
Confidence 888887777653
No 77
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.61 E-value=1.7e-14 Score=136.22 Aligned_cols=141 Identities=20% Similarity=0.278 Sum_probs=80.8
Q ss_pred CceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEc-----
Q psy17795 382 QCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVE----- 456 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~----- 456 (523)
++.++++++|++++.|++++.|++++.||++|.|++++.|+++.||++|.|++++.|.+++|++++.|++++.|.
T Consensus 9 ~~~~~~~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~I 88 (193)
T cd03353 9 TTYIDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVL 88 (193)
T ss_pred eEEEcCCeEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEE
Confidence 445566666666666666666666666666666666666666666666666666666655555555555555543
Q ss_pred -------------CCCCCCC------CCCCceecCCCCeecCCCeecC------CcEEeCCCCEECCCcEE-------eC
Q psy17795 457 -------------GTPCDPN------PNKAFAKMDNPPLFNSNGKLNP------SITILGDGVTVPGELIV-------LN 504 (523)
Q Consensus 457 -------------~~~~~~~------~~~~~v~I~~~~~ig~~~~i~~------g~~iIG~~~~Ig~~~~i-------~~ 504 (523)
++.++.+ ..-..+.|++++.||.++.+.. ..++||+++.||.++++ .+
T Consensus 89 g~~~~Ig~~~~i~~s~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~vigd~~~ig~~~~i~~~~~Ig~~ 168 (193)
T cd03353 89 GEGVHIGNFVEIKKSTIGEGSKANHLSYLGDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAPVTIGDG 168 (193)
T ss_pred CCCCEECCcEEEecceEcCCCEecccceecccEECCCCEEcCceEEeccCCccccCCEECCCeEEccCCEEeCCcEECCC
Confidence 2111110 0011234555555555443311 12456666666666544 56
Q ss_pred eEEcCCcEeCCCCCCccc
Q psy17795 505 SIVLPYKELTRSFKNEIL 522 (523)
Q Consensus 505 ~~v~~~~~i~~~~~~~~i 522 (523)
+.|++++.|++++|+..+
T Consensus 169 ~~i~~gs~V~~~v~~~~~ 186 (193)
T cd03353 169 ATIAAGSTITKDVPPGAL 186 (193)
T ss_pred cEECCCCEEccccCCCCE
Confidence 777888888888886544
No 78
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.60 E-value=8.6e-15 Score=144.60 Aligned_cols=122 Identities=13% Similarity=0.131 Sum_probs=82.8
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEe-------------eeEECCCCEECCCCEEec-------
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-------------ESIILQGASIGNHSLVLN------- 440 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-------------~s~Ig~~~~Ig~~~~I~~------- 440 (523)
+.+.|.+++.|++++.|++++.|.++++||++|.|+++++|+ .+.||++|.|+++|+|..
T Consensus 25 p~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~~~~I~e~~~I~~~~~~~~~ 104 (262)
T PRK05289 25 PFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDNNTIREFVTINRGTVQGGG 104 (262)
T ss_pred CCeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEECCCCEECCCeEEecccccCCC
Confidence 455666667777777777777777788888888888888886 388999999999999873
Q ss_pred -eEECCCCEECCCcEEcCC-CCCC-------CCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEe
Q psy17795 441 -SIVGRNSKVGNWSRVEGT-PCDP-------NPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVL 503 (523)
Q Consensus 441 -~iIg~~~~Ig~~~~i~~~-~~~~-------~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~ 503 (523)
++||+++.|+.++.|... .++. ....+++.|+++++||.++.|.++ +.||+++.|+++++|.
T Consensus 105 ~t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~i~~~-v~Ig~~~~Ig~gs~V~ 175 (262)
T PRK05289 105 VTRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQF-VRIGAHAMVGGMSGVS 175 (262)
T ss_pred eeEECCceEECCCCEECCeEEECCCeEECCccccccccccCCcEEEeecceecCC-CEECCCCEEeeeccee
Confidence 467887777777776421 1111 011245566666666666666666 4456666666666663
No 79
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.60 E-value=1.4e-14 Score=148.83 Aligned_cols=134 Identities=16% Similarity=0.243 Sum_probs=82.1
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEee-eEECCCCEECCCCEEe-ceEECCCCEECCCcEEcCC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE-SIILQGASIGNHSLVL-NSIVGRNSKVGNWSRVEGT 458 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~-s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i~~~ 458 (523)
+++.+.+.+.+++++.|++++.|++++.||++|+|+++|.|++ +.||++|.|+++++|. ++.||++|.|+++++|+..
T Consensus 105 ~~a~v~~~~~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~Ig~~ 184 (343)
T PRK00892 105 PSAVIDPSAKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVIGSD 184 (343)
T ss_pred CCcEECCCCEECCCCEECCCeEEeccceeCCCcEECCCCEEcCCcEECCCCEeCCCeEEcCCCEECCCCEECCCCEEecc
Confidence 4666677777777777777777777777777777777777743 6677777777777775 4557777777777777543
Q ss_pred CCCCCCC---------CCceecCCCCeecCCCeecC---CcEEeCCCCEECCCcEE-eCeEEcCCcEeC
Q psy17795 459 PCDPNPN---------KAFAKMDNPPLFNSNGKLNP---SITILGDGVTVPGELIV-LNSIVLPYKELT 514 (523)
Q Consensus 459 ~~~~~~~---------~~~v~I~~~~~ig~~~~i~~---g~~iIG~~~~Ig~~~~i-~~~~v~~~~~i~ 514 (523)
.++.... .+.+.|++++.||++++|.. +.++||+++.|+.++.| .++.|++++.|.
T Consensus 185 ~f~~~~~~~~~~~~~~~g~v~Ig~~v~IGa~~~I~~~~~~~t~Ig~~~~i~~~v~I~~~~~IG~~~~i~ 253 (343)
T PRK00892 185 GFGFANDRGGWVKIPQLGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIAHNVVIGRHTAIA 253 (343)
T ss_pred CcCcccCCCceeeccccccEEECCCcEECCCcEEecCccccceeCCCCEEeCCeEEccCCEECCCcEEe
Confidence 2221111 13466777777777666642 12555555555555555 444444444443
No 80
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.60 E-value=1.2e-14 Score=136.79 Aligned_cols=118 Identities=21% Similarity=0.353 Sum_probs=90.5
Q ss_pred EECCCCEECCCCEECCCcEECCCCEECCCCEEee----eEECCCCEECCCCEEe-----ceEECCCCEECCCcEEcCCCC
Q psy17795 390 YIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE----SIILQGASIGNHSLVL-----NSIVGRNSKVGNWSRVEGTPC 460 (523)
Q Consensus 390 ~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~----s~Ig~~~~Ig~~~~I~-----~~iIg~~~~Ig~~~~i~~~~~ 460 (523)
.|+++++|++++.|.++++||++|.|+++|+|.. ++|+++|.||++|.|+ +++|++++.||+++.+.+
T Consensus 12 ~i~~~a~I~~~a~I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g--- 88 (196)
T PRK13627 12 VVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHG--- 88 (196)
T ss_pred ccCCCeEECCCCEEECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEee---
Confidence 4566666666666666777777777777777754 5789999999999986 588999999999998875
Q ss_pred CCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeE-EcCCcEeCCCCCCc
Q psy17795 461 DPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSI-VLPYKELTRSFKNE 520 (523)
Q Consensus 461 ~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~-v~~~~~i~~~~~~~ 520 (523)
+.|+++++||.++.|.+| ++||+++.|++|++|...+ +.++.. -.+.|+.
T Consensus 89 --------~vIG~~v~IG~ga~V~~g-~~IG~~s~Vgags~V~~~~~ip~~~~-~~G~Pa~ 139 (196)
T PRK13627 89 --------CVIGRDALVGMNSVIMDG-AVIGEESIVAAMSFVKAGFQGEKRQL-LMGTPAR 139 (196)
T ss_pred --------EEECCCCEECcCCccCCC-cEECCCCEEcCCCEEeCCcCcCCCcE-EEecCCE
Confidence 579999999999999999 7789999999999995443 333433 3355543
No 81
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.59 E-value=2.1e-14 Score=145.80 Aligned_cols=139 Identities=18% Similarity=0.228 Sum_probs=83.6
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEe-eeEECCCCEECCCCEEe--------------------
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVL-------------------- 439 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~s~Ig~~~~Ig~~~~I~-------------------- 439 (523)
+.+.|++++.|++++.|++++.|+++++||++|.|+++++|+ +++||++|.|+++|+|.
T Consensus 114 ~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vIg~~gfg~~~~~~~~~~~i~~~ 193 (324)
T TIGR01853 114 PNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVIGSDGFGYAHTANGGHVKIPQI 193 (324)
T ss_pred CCcEEccCcEECCcEEECCCCEECCcceeCCCceECCCcEECCCCEECCCCEECCCcEECCCCccceeccCCcceecCcc
Confidence 345555666666666666666666677777777777777775 57888888888888773
Q ss_pred -ceEECCCCEECCCcEEcCCCCCCCCCCC------------ceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE----
Q psy17795 440 -NSIVGRNSKVGNWSRVEGTPCDPNPNKA------------FAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV---- 502 (523)
Q Consensus 440 -~~iIg~~~~Ig~~~~i~~~~~~~~~~~~------------~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i---- 502 (523)
.++||++|.||++++|..........+. .++||+++.|+.++.+..+ ++||++|+||.++.|
T Consensus 194 G~vvIgd~v~IGa~~~I~r~~~~~t~Ig~~~~I~n~v~I~~~v~IG~~~~I~~~~~iag~-~~IG~~~~ig~~~~I~~~v 272 (324)
T TIGR01853 194 GRVIIEDDVEIGANTTIDRGAFDDTIIGEGTKIDNLVQIAHNCRIGENCIIVAQVGIAGS-TKIGRNVIIGGQVGVAGHL 272 (324)
T ss_pred ceEEECCCcEECCCCEEecCCcCcceecCCcEEccCcEECCCCEECCCcEECCcceEcCc-cEECCCeEEccccccccCC
Confidence 3778888888888877543322211122 2233333333333333333 455666666655544
Q ss_pred ---eCeEEcCCcEeCCCCCCc
Q psy17795 503 ---LNSIVLPYKELTRSFKNE 520 (523)
Q Consensus 503 ---~~~~v~~~~~i~~~~~~~ 520 (523)
.+++|++++.|++++|+.
T Consensus 273 ~Ig~~~~ig~~s~V~~~v~~~ 293 (324)
T TIGR01853 273 EIGDNVTIGAKSGVTKSIPPP 293 (324)
T ss_pred EECCCCEEccCCEeCCcCCCC
Confidence 356666777777777644
No 82
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.59 E-value=1.6e-14 Score=135.47 Aligned_cols=118 Identities=19% Similarity=0.341 Sum_probs=83.8
Q ss_pred EECCCCEECCCCEECCCcEECCCCEECCCCEEe----eeEECCCCEECCCCEEe-----ceEECCCCEECCCcEEcCCCC
Q psy17795 390 YIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK----ESIILQGASIGNHSLVL-----NSIVGRNSKVGNWSRVEGTPC 460 (523)
Q Consensus 390 ~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~----~s~Ig~~~~Ig~~~~I~-----~~iIg~~~~Ig~~~~i~~~~~ 460 (523)
.|+++++|++++.|.++++||++|.|+++|+|. .++||++|.||++|+|+ +++||+++.|++++.|.+
T Consensus 10 ~i~~~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~--- 86 (192)
T TIGR02287 10 VVHPEAYVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHG--- 86 (192)
T ss_pred cCCCCcEECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcC---
Confidence 445666666666666667777777777777774 36788888888888883 688888888888888875
Q ss_pred CCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-eCeEEcCCcEeCCCCCCc
Q psy17795 461 DPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV-LNSIVLPYKELTRSFKNE 520 (523)
Q Consensus 461 ~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-~~~~v~~~~~i~~~~~~~ 520 (523)
+.|+++++||.++.+.++ ++||++|.|+++++| .+..+.++..+ .+.|++
T Consensus 87 --------siIg~~~~IG~ga~I~~g-~~IG~~s~Vgags~V~~~~~ip~~~l~-~G~Pak 137 (192)
T TIGR02287 87 --------CIVGRNALVGMNAVVMDG-AVIGENSIVAASAFVKAGAEMPAQYLV-VGSPAK 137 (192)
T ss_pred --------CEECCCCEECCCcccCCC-eEECCCCEEcCCCEECCCCEECCCeEE-EccCCE
Confidence 467888888888888777 778888888888888 34444444433 333443
No 83
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.59 E-value=2e-14 Score=130.89 Aligned_cols=110 Identities=21% Similarity=0.417 Sum_probs=72.5
Q ss_pred CCCCEECCCCEECCCcEECCCCEECCCCEEee----eEECCCCEECCCCEE-----eceEECCCCEECCCcEEcCCCCCC
Q psy17795 392 HSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE----SIILQGASIGNHSLV-----LNSIVGRNSKVGNWSRVEGTPCDP 462 (523)
Q Consensus 392 ~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~----s~Ig~~~~Ig~~~~I-----~~~iIg~~~~Ig~~~~i~~~~~~~ 462 (523)
++++.|++++.|.+++.||++|.|+++|+|.. +.||++|.|+++|+| .+++||+++.|++++.+.+
T Consensus 4 ~~~~~i~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~----- 78 (155)
T cd04745 4 DPSSFVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHG----- 78 (155)
T ss_pred CCCeEECCCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEEC-----
Confidence 45555555555555666666666666666643 667777777777777 3577777777777776654
Q ss_pred CCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-eCeEEcCCcEe
Q psy17795 463 NPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV-LNSIVLPYKEL 513 (523)
Q Consensus 463 ~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-~~~~v~~~~~i 513 (523)
+.|+++++|+.++.|.++ ++||+++.|++++++ .+..|.+++.+
T Consensus 79 ------~~Ig~~~~Ig~~~~I~~g-~~Ig~~~~Ig~~s~v~~~~~i~~~~~v 123 (155)
T cd04745 79 ------CTIGRNALVGMNAVVMDG-AVIGEESIVGAMAFVKAGTVIPPRSLI 123 (155)
T ss_pred ------CEECCCCEECCCCEEeCC-CEECCCCEECCCCEeCCCCEeCCCCEE
Confidence 466777777777777776 667888888888777 34445544444
No 84
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.57 E-value=4.1e-14 Score=134.25 Aligned_cols=127 Identities=15% Similarity=0.282 Sum_probs=99.9
Q ss_pred cEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCCC-----
Q psy17795 389 VYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPN----- 463 (523)
Q Consensus 389 ~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~----- 463 (523)
+.+++++.|++++.| .++.||++|.|+++|.|.+++||++|.|+.+|.|.+++||++|.|++++.|.+..+...
T Consensus 3 ~~~~~~~~I~~~a~i-~~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~~~h~~~~~s~~ 81 (204)
T TIGR03308 3 VLLSPEPTLHPTAEL-TESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINATNHPMERPTLH 81 (204)
T ss_pred cccCCCCeECCCcEE-eccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEECCCCCCCCccccc
Confidence 345677788888888 46899999999999999999999999999999999999999999999999976432110
Q ss_pred ----------------------CCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCCcEeCCCCCC
Q psy17795 464 ----------------------PNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKELTRSFKN 519 (523)
Q Consensus 464 ----------------------~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i~~~~~~ 519 (523)
.....+.|+++++||.++.|.+| ++||++++|+++++|.+. |.|+..+ .+.|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~I~~g-v~Ig~~~~I~~gs~v~~~-i~~~~~~-~G~Pa 156 (204)
T TIGR03308 82 HFTYRAAMYFDDASDDADFFAWRRAKRVTIGHDVWIGHGAVILPG-VTIGNGAVIAAGAVVTKD-VAPYTIV-AGVPA 156 (204)
T ss_pred ccccccccccccccccccccccccCCCeEECCCCEECCCCEECCC-CEECCCCEECCCCEECCC-CCCCcEE-EecCc
Confidence 12357889999999999999988 777999999999988543 3344333 34444
No 85
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.57 E-value=4e-14 Score=129.99 Aligned_cols=112 Identities=22% Similarity=0.303 Sum_probs=70.9
Q ss_pred ECCCCEECCCCEECCCcEECCCCEECCCCEEe----eeEECCCCEECCCCEEece-----------EECCCCEECCCcEE
Q psy17795 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK----ESIILQGASIGNHSLVLNS-----------IVGRNSKVGNWSRV 455 (523)
Q Consensus 391 i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~----~s~Ig~~~~Ig~~~~I~~~-----------iIg~~~~Ig~~~~i 455 (523)
|++++.|++++.|.+++.||++|.|++++.|. .++||++|.|+++|+|.+. +||+++.|+.++.+
T Consensus 2 ~~~~~~I~~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i 81 (164)
T cd04646 2 IAPGAVVCQESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKC 81 (164)
T ss_pred cCCCcEECCCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEE
Confidence 45666666666666666666666666666663 2567777777777777533 34455555555544
Q ss_pred cCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-eCeEEcCCcEeC
Q psy17795 456 EGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV-LNSIVLPYKELT 514 (523)
Q Consensus 456 ~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-~~~~v~~~~~i~ 514 (523)
.+ ++||++|+||.+++|.++ ++||++|+||++++| .+..+.+++++.
T Consensus 82 ~~-----------~~IGd~~~Ig~~a~I~~g-v~Ig~~~~IgagsvV~~~~~i~~~~vi~ 129 (164)
T cd04646 82 EA-----------LKIGNNNVFESKSFVGKN-VIITDGCIIGAGCKLPSSEILPENTVIY 129 (164)
T ss_pred Ee-----------eEECCCCEEeCCCEECCC-CEECCCCEEeCCeEECCCcEECCCeEEe
Confidence 32 567777777777777777 666777777777777 344555554443
No 86
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.57 E-value=3.2e-14 Score=140.15 Aligned_cols=106 Identities=23% Similarity=0.307 Sum_probs=79.9
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEee-eEECCCCEECCCCEEe--------------------
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE-SIILQGASIGNHSLVL-------------------- 439 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~-s~Ig~~~~Ig~~~~I~-------------------- 439 (523)
+.++|.+++.||+++.|+++++|++++.||++|+|.++++|.+ +.||++|.|+++++|.
T Consensus 122 ~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a~~~~g~~Ki~q~g 201 (338)
T COG1044 122 PNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYAGTAIGWVKIPQIG 201 (338)
T ss_pred CCeEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEEccCccccccccCCceEcceec
Confidence 5677777777777888888888888888888888888888865 8888888888888873
Q ss_pred ceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCC
Q psy17795 440 NSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPS 486 (523)
Q Consensus 440 ~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g 486 (523)
+++|+++|.||.++.|.....++.....+++|++.+.|++++.|..+
T Consensus 202 ~V~Igd~VeIGanT~Idrga~~dTvIg~~~kIdN~vqIaHnv~IG~~ 248 (338)
T COG1044 202 RVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIGHNVRIGEH 248 (338)
T ss_pred eEEECCceEEcccceeccccccCceecCCcEEcceeEEccccEECCC
Confidence 47899999999999997766655555556666666666666555543
No 87
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=99.56 E-value=2.4e-14 Score=133.53 Aligned_cols=129 Identities=16% Similarity=0.267 Sum_probs=104.6
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEE-eeeEECCCCEECCCCEEe-------------ceEECCC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRI-KESIILQGASIGNHSLVL-------------NSIVGRN 446 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I-~~s~Ig~~~~Ig~~~~I~-------------~~iIg~~ 446 (523)
|++.|.+.+.|++++.|+|.|+|++++.||++++|+++++| +.+.||.++.|-+++.|. ..+||++
T Consensus 8 PTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~IG~~ 87 (260)
T COG1043 8 PTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIGDN 87 (260)
T ss_pred cceeeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEECCC
Confidence 67788888888888888888888888888888888888888 558999999999999884 4799999
Q ss_pred CEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeC-eEEcCCcEe
Q psy17795 447 SKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLN-SIVLPYKEL 513 (523)
Q Consensus 447 ~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~-~~v~~~~~i 513 (523)
+.|.++++|..+. ...++.+.||+++++.+.+.|..+ |+||++|++..++.+.+ ..|+..+.|
T Consensus 88 n~IRE~vTi~~GT---~~g~g~T~IGdnnl~May~HVAHD-C~iGn~~ilaNnatLAGHV~igD~aii 151 (260)
T COG1043 88 NTIREFVTIHRGT---VQGGGVTRIGDNNLIMAYAHVAHD-CVIGNNCILANNATLAGHVEVGDYAII 151 (260)
T ss_pred CeEeeEEEEeccc---cCCceeEEECCCCEEEEeeeeecc-ceecCcEEEecCCeEeccEEECCEEEE
Confidence 9999999996542 233467889999999999999998 88999998888888843 334343333
No 88
>PLN02296 carbonate dehydratase
Probab=99.55 E-value=7.7e-14 Score=137.16 Aligned_cols=118 Identities=19% Similarity=0.284 Sum_probs=85.9
Q ss_pred EECCCCEECCCCEECCCcEECCCCEECCCCEEee----eEECCCCEECCCCEEe-----------ceEECCCCEECCCcE
Q psy17795 390 YIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE----SIILQGASIGNHSLVL-----------NSIVGRNSKVGNWSR 454 (523)
Q Consensus 390 ~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~----s~Ig~~~~Ig~~~~I~-----------~~iIg~~~~Ig~~~~ 454 (523)
.|++++.|.+++.|.+++.||++|.|+++|+|.. ++||++|.|+++|+|. +++||++|.||++|.
T Consensus 54 ~I~~~~~I~p~A~V~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~av 133 (269)
T PLN02296 54 VVDKDAFVAPSASVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAV 133 (269)
T ss_pred ccCCCCEECCCcEEEcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCce
Confidence 3455555555555555666666666666666643 5788888888888884 578889999988888
Q ss_pred EcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-eCeEEcCCcEeCCCCCCc
Q psy17795 455 VEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV-LNSIVLPYKELTRSFKNE 520 (523)
Q Consensus 455 i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-~~~~v~~~~~i~~~~~~~ 520 (523)
|.+ +.|+++|+||.+++|.+| ++||++|.|++|++| .+..|.++..+. +.|+.
T Consensus 134 I~g-----------~~Igd~v~IG~ga~I~~g-v~Ig~~a~IgagSvV~~~~~I~~~~~~~-G~PA~ 187 (269)
T PLN02296 134 LHG-----------CTVEDEAFVGMGATLLDG-VVVEKHAMVAAGALVRQNTRIPSGEVWA-GNPAK 187 (269)
T ss_pred ecC-----------CEECCCcEECCCcEECCC-eEECCCCEECCCCEEecCCEeCCCeEEe-ccCcE
Confidence 865 468888999999888888 778999999999988 455566666543 34543
No 89
>PF05486 SRP9-21: Signal recognition particle 9 kDa protein (SRP9); InterPro: IPR008832 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the 9 kDa SRP9 component. Both SRP9 and SRP14 have the same (beta)-alpha-beta(3)-alpha fold. The heterodimer has pseudo two-fold symmetry and is saddle-like, consisting of a curved six-stranded beta-sheet that has four helices packed on the convex side and an exposed concave surface lined with positively charged residues. The SRP9/SRP14 heterodimer is essential for SRP RNA binding, mediating the pausing of synthesis of ribosome associated nascent polypeptides that have been engaged by the targeting domain of SRP [].; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0045900 negative regulation of translational elongation, 0048500 signal recognition particle; PDB: 1E8O_A 1RY1_C.
Probab=99.54 E-value=2e-15 Score=119.47 Aligned_cols=61 Identities=30% Similarity=0.559 Sum_probs=50.1
Q ss_pred cccccceeee-----ccCCCccEEEEEEEe-----cCCeEEEEEecCce--EEEEEcccchhhhhHHHhhhcc
Q psy17795 3 YDHKNGYLKL-----KMTDDNARYSMKYDH-----KNGYLKLKMTDDNV--CLIYKTEMSQDLKKIDNAKKHV 63 (523)
Q Consensus 3 ~~~~~~~~~~-----~~~p~~~r~~~k~~~-----~~~~~~~k~t~~~~--~~~~~~~~~~~~~~~e~~~~~~ 63 (523)
+.+|+-|++. +.+|.+|||+|||+| ++|+|+||+|||.. |+||+|+.++|++||++++..+
T Consensus 2 ~~~~deF~~~s~~L~~a~P~~TR~~~kY~~~~~~~~~~~l~lK~td~~~g~clKykT~k~~dv~Rl~~~~g~l 74 (79)
T PF05486_consen 2 VKSWDEFIEQSEKLYEANPSTTRYSIKYRHPSKKPPTGKLVLKTTDPHSGVCLKYKTDKAKDVSRLESFLGPL 74 (79)
T ss_dssp ESHHHHHHHHHHHHHHH-TTT-EEEEEBBT-----TTTBEEEEEE-SS---EEEEEE-SGGGHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCceEEEEEEecccccCCCceEEEEEeCCCceeEEEEEeCHHHHHHHHHHHHHHH
Confidence 3567777774 467999999999999 99999999999999 9999999999999999998664
No 90
>PLN02472 uncharacterized protein
Probab=99.53 E-value=1.3e-13 Score=133.71 Aligned_cols=118 Identities=10% Similarity=0.195 Sum_probs=87.7
Q ss_pred ECCCCEECCCCEECCCcEECCCCEECCCCEEee----eEECCCCEECCCCEEe-----------ceEECCCCEECCCcEE
Q psy17795 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE----SIILQGASIGNHSLVL-----------NSIVGRNSKVGNWSRV 455 (523)
Q Consensus 391 i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~----s~Ig~~~~Ig~~~~I~-----------~~iIg~~~~Ig~~~~i 455 (523)
++++++|.+++.|.+++.||++|.|+.+++|.. .+||++|.|+++|+|+ +++||++|.||++|.|
T Consensus 62 i~~~~~I~p~a~i~G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L 141 (246)
T PLN02472 62 VAVDAYVAPNVVLAGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLL 141 (246)
T ss_pred cCCCCEECCCCEEecCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEE
Confidence 455666666666666677777777777776643 6788888888888884 4788888888888888
Q ss_pred cCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-eCeEEcCCcEeCCCCCCcc
Q psy17795 456 EGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV-LNSIVLPYKELTRSFKNEI 521 (523)
Q Consensus 456 ~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-~~~~v~~~~~i~~~~~~~~ 521 (523)
.+ ++|++++.||.+++|.++ ++||++|.|+++++| .+..+.++..+. +.|+..
T Consensus 142 ~~-----------~~Igd~v~IG~~svI~~g-avIg~~~~Ig~gsvV~~g~~Ip~g~~~~-G~PA~~ 195 (246)
T PLN02472 142 RS-----------CTIEPECIIGQHSILMEG-SLVETHSILEAGSVLPPGRRIPTGELWA-GNPARF 195 (246)
T ss_pred CC-----------eEEcCCCEECCCCEECCC-CEECCCCEECCCCEECCCCEeCCCCEEE-ecCCEE
Confidence 65 578888888888888888 788999999999988 566676666654 556543
No 91
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.53 E-value=2.4e-13 Score=125.29 Aligned_cols=114 Identities=25% Similarity=0.346 Sum_probs=81.9
Q ss_pred EECCCCEECCCCEECCCcEECCCCEECCCCEEee-----eEECCCCEECCCCEEe-----ceEECCCCEECCCcEEcCCC
Q psy17795 390 YIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE-----SIILQGASIGNHSLVL-----NSIVGRNSKVGNWSRVEGTP 459 (523)
Q Consensus 390 ~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~-----s~Ig~~~~Ig~~~~I~-----~~iIg~~~~Ig~~~~i~~~~ 459 (523)
.|++++.|++++.|.+++.||++|.|++++.|.. +.||++|.|++++.|. .+.||+++.|++++.|.+
T Consensus 4 ~ig~~~~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g-- 81 (167)
T cd00710 4 VIDPSAYVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHG-- 81 (167)
T ss_pred EeCCCeEECCCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeC--
Confidence 4556666666666666666666666666666643 6788888888888884 577888888888888865
Q ss_pred CCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCCcEeCC
Q psy17795 460 CDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKELTR 515 (523)
Q Consensus 460 ~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i~~ 515 (523)
.+.||++|+||.++.|. . +.||++|.||+++.|.+..+++++.+..
T Consensus 82 --------~~~Ig~~~~Ig~~~~I~-~-~~Ig~~~~Ig~~s~i~~~~i~~~~~v~~ 127 (167)
T cd00710 82 --------PAYIGDNCFIGFRSVVF-N-AKVGDNCVIGHNAVVDGVEIPPGRYVPA 127 (167)
T ss_pred --------CEEECCCCEECCCCEEE-C-CEECCCCEEcCCCEEeCCEeCCCCEECC
Confidence 36788888888888775 3 6678888888888886666666666543
No 92
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.52 E-value=3.3e-13 Score=128.72 Aligned_cols=138 Identities=20% Similarity=0.254 Sum_probs=77.5
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEee-eEECCCCEECCCCEEe--------------------
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE-SIILQGASIGNHSLVL-------------------- 439 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~-s~Ig~~~~Ig~~~~I~-------------------- 439 (523)
+.+.+.+++.|+++++|++++.|++++.||++|.|++++.|++ ++|+++|.|++++.|.
T Consensus 12 ~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~ 91 (205)
T cd03352 12 PNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDGGGWVKIPQLG 91 (205)
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEEcCCCceeEecCCcEEEcCCcc
Confidence 3555666666666666666666666777777777777777755 7777777777776662
Q ss_pred ceEECCCCEECCCcEEcCCCC-----CC------C-CCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-----
Q psy17795 440 NSIVGRNSKVGNWSRVEGTPC-----DP------N-PNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV----- 502 (523)
Q Consensus 440 ~~iIg~~~~Ig~~~~i~~~~~-----~~------~-~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i----- 502 (523)
.+.|++++.|++++.+..... +. + .....+.|++++.++.++.+..+ +.||++|.|+++++|
T Consensus 92 ~v~Ig~~~~Ig~~~~i~~~~~~~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~-~~Ig~~~~ig~~~~v~~~~~ 170 (205)
T cd03352 92 GVIIGDDVEIGANTTIDRGALGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGS-TTIGDNVIIGGQVGIAGHLT 170 (205)
T ss_pred eEEECCCEEECCCCEEeccccCCeEECCCCEECCceEEeCCCEECCCCEECCCCEEccc-cEECCCeEEcCCCEEeCCcE
Confidence 356666666666666643110 00 0 00123344444444444444343 445666666666555
Q ss_pred --eCeEEcCCcEeCCCCCC
Q psy17795 503 --LNSIVLPYKELTRSFKN 519 (523)
Q Consensus 503 --~~~~v~~~~~i~~~~~~ 519 (523)
.++.|++++.+.+++|+
T Consensus 171 ig~~~~i~~~s~v~~~~~~ 189 (205)
T cd03352 171 IGDGVVIGAGSGVTSIVPP 189 (205)
T ss_pred ECCCCEEcCCCEEeeECCC
Confidence 23445555555555553
No 93
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.51 E-value=2.8e-13 Score=139.27 Aligned_cols=138 Identities=14% Similarity=0.169 Sum_probs=87.3
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEee-eEECCCCEECCCCEEe--------------------
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE-SIILQGASIGNHSLVL-------------------- 439 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~-s~Ig~~~~Ig~~~~I~-------------------- 439 (523)
+.+.|++++.|++++.|++++.|++++.||++|.|+++++|.+ +.||++|.|+++|+|.
T Consensus 123 ~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~Ig~~~f~~~~~~~~~~~~~~~g 202 (343)
T PRK00892 123 PNAVIGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVIGSDGFGFANDRGGWVKIPQLG 202 (343)
T ss_pred CCeEEeccceeCCCcEECCCCEEcCCcEECCCCEeCCCeEEcCCCEECCCCEECCCCEEeccCcCcccCCCceeeccccc
Confidence 4556666667777777777777777777777777777777754 6688888888888883
Q ss_pred ceEECCCCEECCCcEEcCCCCCCCCCC------------CceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-----
Q psy17795 440 NSIVGRNSKVGNWSRVEGTPCDPNPNK------------AFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV----- 502 (523)
Q Consensus 440 ~~iIg~~~~Ig~~~~i~~~~~~~~~~~------------~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i----- 502 (523)
+++||+++.||++++|..........+ ..++||+++.|++++.|..+ ++||++|.||.++.|
T Consensus 203 ~v~Ig~~v~IGa~~~I~~~~~~~t~Ig~~~~i~~~v~I~~~~~IG~~~~i~~~~~i~~~-~~iG~~~~ig~~~~i~~~~~ 281 (343)
T PRK00892 203 RVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGS-TKIGRYCMIGGQVGIAGHLE 281 (343)
T ss_pred cEEECCCcEECCCcEEecCccccceeCCCCEEeCCeEEccCCEECCCcEEeeeeeecCC-CEECCceEECCCCEEcCCCE
Confidence 478888888888888753222111111 23444444444444444444 556777777776666
Q ss_pred --eCeEEcCCcEeCCCCCC
Q psy17795 503 --LNSIVLPYKELTRSFKN 519 (523)
Q Consensus 503 --~~~~v~~~~~i~~~~~~ 519 (523)
.+++|++++.|.+++|.
T Consensus 282 ig~~~~i~~~s~v~~~i~~ 300 (343)
T PRK00892 282 IGDGVTITAMSGVTKSIPE 300 (343)
T ss_pred ECCCCEEecCCeeCCccCC
Confidence 24555566666666664
No 94
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=99.50 E-value=1e-13 Score=129.26 Aligned_cols=125 Identities=21% Similarity=0.300 Sum_probs=101.4
Q ss_pred CcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEe-ceEECCCCEECCCcEEcCCCCCCC--C
Q psy17795 388 DVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVL-NSIVGRNSKVGNWSRVEGTPCDPN--P 464 (523)
Q Consensus 388 ~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i~~~~~~~~--~ 464 (523)
.+.|+|.+.|.|++.|++++.||+.|+|+++++| ++++.|+++++|+ .+.||+++.|-+++.|++.+.+.+ .
T Consensus 3 ~~~IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~i-----g~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykg 77 (260)
T COG1043 3 MAKIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEI-----GDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKG 77 (260)
T ss_pred ccccCcceeeCCCCCcCCCCEECceEEECCCcEE-----CCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCC
Confidence 3567777777777777788888888888877775 4888899999998 799999999999999998777653 4
Q ss_pred CCCceecCCCCeecCCCeecC------CcEEeCCCCEECCCcEE-eCeEEcCCcEeCCCC
Q psy17795 465 NKAFAKMDNPPLFNSNGKLNP------SITILGDGVTVPGELIV-LNSIVLPYKELTRSF 517 (523)
Q Consensus 465 ~~~~v~I~~~~~ig~~~~i~~------g~~iIG~~~~Ig~~~~i-~~~~v~~~~~i~~~~ 517 (523)
+.+.+.||+++.|.+.++|.. +.|.||+++.+-+.+.| .+|+|+.++++..++
T Consensus 78 e~T~l~IG~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNna 137 (260)
T COG1043 78 EPTRLIIGDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNA 137 (260)
T ss_pred CceEEEECCCCeEeeEEEEeccccCCceeEEECCCCEEEEeeeeeccceecCcEEEecCC
Confidence 457888999999999887764 56888998888888888 788888887776655
No 95
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.50 E-value=2.9e-13 Score=131.14 Aligned_cols=112 Identities=13% Similarity=0.175 Sum_probs=61.4
Q ss_pred CCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEe-ceEECCCCEECCCcEEcCCCCCCCCCCCceecC
Q psy17795 394 SASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVL-NSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMD 472 (523)
Q Consensus 394 ~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~ 472 (523)
++.|.|++.|++++.||++++|.+..+-..+.||++|.|+.+++|. ++.||++|.|+.++.|++... ......++|+
T Consensus 100 ~~rv~p~a~i~~ga~Ig~~vvI~p~~Vniga~IGeGt~I~~~a~IG~~v~IG~nv~I~~g~~IgG~~e--p~~~~~ViIg 177 (269)
T TIGR00965 100 GFRVVPGAAVRQGAFIAKNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLE--PLQANPTIIE 177 (269)
T ss_pred CEEECCCcEECCCcEECCCCEEeeeEEcCCcEECCCCEECCCcEECCCCEECCCCEEcCCcccCCCcc--cCCCCCeEEC
Confidence 3333333333344444444444332111123445555555555554 456666666666665544211 1233557788
Q ss_pred CCCeecCCCeecCCcEEeCCCCEECCCcEE-eCeEEc
Q psy17795 473 NPPLFNSNGKLNPSITILGDGVTVPGELIV-LNSIVL 508 (523)
Q Consensus 473 ~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-~~~~v~ 508 (523)
++|+||+++.|.+| ++||++|+||+|++| .+..|+
T Consensus 178 Dnv~IGa~a~I~~G-V~IG~gavIGaGavI~~~~~I~ 213 (269)
T TIGR00965 178 DNCFIGARSEIVEG-VIVEEGSVISMGVFIGQSTKIY 213 (269)
T ss_pred CCCEECCCCEEcCC-CEECCCCEEeCCCEECCCCEEe
Confidence 88888888877777 566888888888777 445554
No 96
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.49 E-value=6.8e-13 Score=118.51 Aligned_cols=90 Identities=10% Similarity=0.172 Sum_probs=55.7
Q ss_pred CCCEECCCCEEe-ceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-eCe
Q psy17795 428 QGASIGNHSLVL-NSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV-LNS 505 (523)
Q Consensus 428 ~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-~~~ 505 (523)
++|.|+++++|. ++.||++|.|++++.|.+... ......+.|+++++|+++++|.++ +.||+++.|+++++| .+.
T Consensus 36 ~~~~I~~~~~I~~~~~IG~~~~I~~~~~igg~~~--~~~~~~v~Ig~~~~Ig~~a~I~~g-v~Ig~~~~Ig~g~~V~~~~ 112 (139)
T cd03350 36 EGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVLE--PLQATPVIIEDDVFIGANCEVVEG-VIVGKGAVLAAGVVLTQST 112 (139)
T ss_pred CCeEEcCCCEECCCCEECCCCEECCCCEECCccc--ccccCCeEECCCCEECCCCEECCC-CEECCCCEEcCCCEEcCCe
Confidence 334444444442 456666666666666654311 112245777888888888888777 667888888888877 445
Q ss_pred EEc---CCcEeCCCCCCc
Q psy17795 506 IVL---PYKELTRSFKNE 520 (523)
Q Consensus 506 ~v~---~~~~i~~~~~~~ 520 (523)
.|+ ++..+.+++|..
T Consensus 113 ~I~~~~~~~~v~~~~~~~ 130 (139)
T cd03350 113 PIYDRETGEIYYGRVPPG 130 (139)
T ss_pred EecccCcccEEecccCCC
Confidence 554 566777777754
No 97
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.48 E-value=5.2e-13 Score=130.95 Aligned_cols=137 Identities=13% Similarity=0.123 Sum_probs=100.4
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEe-------------eeEECCCCEECCCCEEe-------c
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-------------ESIILQGASIGNHSLVL-------N 440 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-------------~s~Ig~~~~Ig~~~~I~-------~ 440 (523)
|.+.|.+++.|++++.|++++.|.+++.||++|.|++++.|+ .+.||++|.|+++++|. .
T Consensus 22 p~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~~~~I~e~vtI~~gt~~g~~ 101 (255)
T PRK12461 22 PFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGDRNVIREGVTIHRGTKGGGV 101 (255)
T ss_pred CCCEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEECCceEECCccEEecCcccCCc
Confidence 455666667777777777777777788888888888888886 36799999999999996 2
Q ss_pred eEECCC------CEECCCcEEcCCCC-CCC-CCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCCcE
Q psy17795 441 SIVGRN------SKVGNWSRVEGTPC-DPN-PNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKE 512 (523)
Q Consensus 441 ~iIg~~------~~Ig~~~~i~~~~~-~~~-~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~ 512 (523)
+.||++ +.|+++|.|++... ..+ .-.+++.|+++++||.++.|.++ +.||+++.|+++++|... |.|++.
T Consensus 102 t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V~~~-~~IG~~a~Vg~gs~V~~d-Vpp~~i 179 (255)
T PRK12461 102 TRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQF-CRIGALAMMAGGSRISKD-VPPYCM 179 (255)
T ss_pred EEEcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCEECCC-CEECCCcEECCCceEecc-CCCCeE
Confidence 445554 44555555554332 221 22468999999999999999999 777999999999999554 567766
Q ss_pred eCCCCCCc
Q psy17795 513 LTRSFKNE 520 (523)
Q Consensus 513 i~~~~~~~ 520 (523)
+. +.|+.
T Consensus 180 ~~-G~pa~ 186 (255)
T PRK12461 180 MA-GHPTN 186 (255)
T ss_pred Ee-cCcce
Confidence 64 66654
No 98
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.47 E-value=9.8e-13 Score=124.24 Aligned_cols=127 Identities=20% Similarity=0.316 Sum_probs=78.1
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEe-ceEECCC-------------
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVL-NSIVGRN------------- 446 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~-~~iIg~~------------- 446 (523)
+++.|.+++.|++++.|++++.|+. +.||++|.|++++.|.+++|++++.|++++.|. +++|+++
T Consensus 26 ~~a~i~~~~~Ig~~~~I~~~~~I~~-~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~s~ 104 (193)
T cd03353 26 PGVILEGKTVIGEDCVIGPNCVIKD-STIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKKST 104 (193)
T ss_pred CCCEEeCcCEECCCCEECCCcEEeC-CEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCEECCcEEEecce
Confidence 3555666666666666666666643 366666666666666666666665555555553 3333322
Q ss_pred ---------------------CEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCe
Q psy17795 447 ---------------------SKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNS 505 (523)
Q Consensus 447 ---------------------~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~ 505 (523)
+.||+++.+.+. .......+.|++++++|.++.+.++ +.||+++.|+++++|.+.
T Consensus 105 ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~---~~~~~~~~vigd~~~ig~~~~i~~~-~~Ig~~~~i~~gs~V~~~ 180 (193)
T cd03353 105 IGEGSKANHLSYLGDAEIGEGVNIGAGTITCNY---DGVNKHRTVIGDNVFIGSNSQLVAP-VTIGDGATIAAGSTITKD 180 (193)
T ss_pred EcCCCEecccceecccEECCCCEEcCceEEecc---CCccccCCEECCCeEEccCCEEeCC-cEECCCcEECCCCEEccc
Confidence 222222222110 0111236889999999999999999 678999999999999654
Q ss_pred EEcCCcEe
Q psy17795 506 IVLPYKEL 513 (523)
Q Consensus 506 ~v~~~~~i 513 (523)
+.|++.+
T Consensus 181 -v~~~~~v 187 (193)
T cd03353 181 -VPPGALA 187 (193)
T ss_pred -cCCCCEE
Confidence 3444443
No 99
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.47 E-value=7.1e-13 Score=120.43 Aligned_cols=110 Identities=21% Similarity=0.325 Sum_probs=62.2
Q ss_pred CCCCEECCCCEECCCcEECCCCEECCCCEEee----eEECCCCEECCCCEEec-----eEECCCCEECCCcEEcCCCCCC
Q psy17795 392 HSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE----SIILQGASIGNHSLVLN-----SIVGRNSKVGNWSRVEGTPCDP 462 (523)
Q Consensus 392 ~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~----s~Ig~~~~Ig~~~~I~~-----~iIg~~~~Ig~~~~i~~~~~~~ 462 (523)
+++++|+++++|.++++||++|.|++++.|.. ++||++|.|+++|+|.. ++||+++.|+.+|.+.+
T Consensus 3 ~~~~~i~~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~----- 77 (153)
T cd04645 3 DPSAFIAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHG----- 77 (153)
T ss_pred cCCeEECCCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEee-----
Confidence 34444444444444555555555555555532 46666666666666654 46666666666666643
Q ss_pred CCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-eCeEEcCCcEe
Q psy17795 463 NPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV-LNSIVLPYKEL 513 (523)
Q Consensus 463 ~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-~~~~v~~~~~i 513 (523)
+.|+++++|+.++.+..+ ++||++|.|++++++ .+..+.+++.+
T Consensus 78 ------~~Ig~~~~Ig~~~~v~~~-~~ig~~~~ig~~~~v~~~~~i~~~~~~ 122 (153)
T cd04645 78 ------CTIGDNCLIGMGAIILDG-AVIGKGSIVAAGSLVPPGKVIPPGSLV 122 (153)
T ss_pred ------eEECCCCEECCCCEEcCC-CEECCCCEECCCCEECCCCEeCCCCEE
Confidence 355666666666666555 556777777777666 34444454444
No 100
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.47 E-value=6.7e-13 Score=120.61 Aligned_cols=108 Identities=21% Similarity=0.229 Sum_probs=52.5
Q ss_pred CCCEECCCCEECCCcEECCCCEECCCCEEee----eEECCCCEECCCCEEec-----eEECCCCEECCCcEEcCCCCCCC
Q psy17795 393 SSASVHPTAIVGPNVSIDDGAVIGPGVRIKE----SIILQGASIGNHSLVLN-----SIVGRNSKVGNWSRVEGTPCDPN 463 (523)
Q Consensus 393 ~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~----s~Ig~~~~Ig~~~~I~~-----~iIg~~~~Ig~~~~i~~~~~~~~ 463 (523)
++++|++++.|.+++.||++|.|++++.|.. ++||++|.|+++|.|.. ++||+++.|++++.+.+
T Consensus 5 ~~~~i~~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~------ 78 (154)
T cd04650 5 PKAYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHG------ 78 (154)
T ss_pred CCeEECCCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEEC------
Confidence 3334444443434444444444444444433 24555555555555542 45555555555555533
Q ss_pred CCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-eCeEEcCCcE
Q psy17795 464 PNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV-LNSIVLPYKE 512 (523)
Q Consensus 464 ~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-~~~~v~~~~~ 512 (523)
+.|+++++|+.++.+.++ ++||++++|++++.+ .+..+.++..
T Consensus 79 -----~~Ig~~~~Ig~~~~i~~~-~~Ig~~~~vg~~~~v~~g~~i~~~~v 122 (154)
T cd04650 79 -----AKVGNYVIVGMGAILLNG-AKIGDHVIIGAGAVVTPGKEIPDYSL 122 (154)
T ss_pred -----cEECCCCEEcCCCEEeCC-CEECCCCEECCCCEECCCcEeCCCCE
Confidence 244555555555555444 455666666666655 3334444444
No 101
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.46 E-value=1.1e-12 Score=120.50 Aligned_cols=110 Identities=22% Similarity=0.206 Sum_probs=88.7
Q ss_pred CCceEecCcEECCCCEECCCCEEC---CCcEECCCCEECCCCEEee-----------eEECCCCEECCCCEEeceEECCC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVG---PNVSIDDGAVIGPGVRIKE-----------SIILQGASIGNHSLVLNSIVGRN 446 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~---~~~~Ig~~~~I~~~~~I~~-----------s~Ig~~~~Ig~~~~I~~~iIg~~ 446 (523)
+++.+.+++.||+++.|++++.|. ++++||++|.|+++|.|.+ +.||+++.|+.++.|.+++||++
T Consensus 10 ~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~~~IGd~ 89 (164)
T cd04646 10 QESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEALKIGNN 89 (164)
T ss_pred CCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEeeEECCC
Confidence 567788899999999999999985 5689999999999999965 46889999999999999999999
Q ss_pred CEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcE
Q psy17795 447 SKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELI 501 (523)
Q Consensus 447 ~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~ 501 (523)
|.||.+|.|.+ .++|++++.||+++.|.++ +.|+++++++.+..
T Consensus 90 ~~Ig~~a~I~~----------gv~Ig~~~~IgagsvV~~~-~~i~~~~vi~g~~~ 133 (164)
T cd04646 90 NVFESKSFVGK----------NVIITDGCIIGAGCKLPSS-EILPENTVIYGADC 133 (164)
T ss_pred CEEeCCCEECC----------CCEECCCCEEeCCeEECCC-cEECCCeEEeCCce
Confidence 99999999976 3678888887777665555 33455555544443
No 102
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.46 E-value=5.5e-13 Score=142.48 Aligned_cols=123 Identities=21% Similarity=0.317 Sum_probs=77.4
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEe-ceEECCCCEECCCcEEcC--
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVL-NSIVGRNSKVGNWSRVEG-- 457 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i~~-- 457 (523)
+++.|.+++.||+++.|++++.| .++.||++|.|++++.|.+++||++|.||++++|. +++|+++|.||+++.+.+
T Consensus 272 ~~~~i~~~~~ig~~~~I~~~~~i-~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~ 350 (451)
T TIGR01173 272 PNVILEGKVKIGDDVVIGPGCVI-KNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNAR 350 (451)
T ss_pred CCeEEeCceEECCCCEECCCcEE-eeeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccceeecCcE
Confidence 35556666666666666666666 35666666666666666666666666665555554 344444444443332211
Q ss_pred ---------------CCCCC--------------CCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCe
Q psy17795 458 ---------------TPCDP--------------NPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNS 505 (523)
Q Consensus 458 ---------------~~~~~--------------~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~ 505 (523)
+.++. ......++||++++||.++.|.++ +.||++|+|++|++|...
T Consensus 351 ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~-~~ig~~~~i~~g~~v~~~ 426 (451)
T TIGR01173 351 IGKGSKAGHLSYLGDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAP-VKVGDGATIAAGSTVTKD 426 (451)
T ss_pred ECCCcEecceeeEeeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCCEEECC-cEECCCCEEccCCEECcc
Confidence 00000 011235889999999999999999 677999999999999443
No 103
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.45 E-value=1.7e-12 Score=118.25 Aligned_cols=91 Identities=23% Similarity=0.357 Sum_probs=77.4
Q ss_pred CCceEecCcEECCCCEECCCCEECC---CcEECCCCEECCCCEE-----eeeEECCCCEECCCCEEeceEECCCCEECCC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGP---NVSIDDGAVIGPGVRI-----KESIILQGASIGNHSLVLNSIVGRNSKVGNW 452 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~---~~~Ig~~~~I~~~~~I-----~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~ 452 (523)
+++.+.+++.|++++.|++++.|.+ ++.||++|.|+++|.| .+++|+++|.|++++.+.+++||++|.||.+
T Consensus 11 ~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~ 90 (155)
T cd04745 11 PTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGRNALVGMN 90 (155)
T ss_pred CCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECCCCEECCC
Confidence 5678888999999999999999865 5899999999999999 5599999999999999999999999999999
Q ss_pred cEEcCCCCCCCCCCCceecCCCCeecCCC
Q psy17795 453 SRVEGTPCDPNPNKAFAKMDNPPLFNSNG 481 (523)
Q Consensus 453 ~~i~~~~~~~~~~~~~v~I~~~~~ig~~~ 481 (523)
+.|.+ .+.|++++.|+.++
T Consensus 91 ~~I~~----------g~~Ig~~~~Ig~~s 109 (155)
T cd04745 91 AVVMD----------GAVIGEESIVGAMA 109 (155)
T ss_pred CEEeC----------CCEECCCCEECCCC
Confidence 99965 24566665554443
No 104
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.45 E-value=1.8e-12 Score=126.94 Aligned_cols=94 Identities=7% Similarity=0.094 Sum_probs=61.3
Q ss_pred ECCCCEECCCCEEe-ceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-e
Q psy17795 426 ILQGASIGNHSLVL-NSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV-L 503 (523)
Q Consensus 426 Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-~ 503 (523)
|+++|.|+.+++|. ++.||++|.|+.++.|.+.... .....+.|+++|+||+++.|.+| ++||++|+|+++++| .
T Consensus 135 Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~~~--~~~~~viIgDnv~IGa~s~I~~G-v~IGdgavIgag~vV~~ 211 (272)
T PRK11830 135 VDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEP--LQANPVIIEDNCFIGARSEVVEG-VIVEEGSVLGMGVFLGQ 211 (272)
T ss_pred ECCCcEEccccEECCCCEECCCcEECCCccCCCCccc--cCcCCeEEcCCCEECCCCEEcCC-CEECCCCEEcCCCEEcC
Confidence 33444444444444 3466666666666666553211 12235788999999999888888 777999999999888 6
Q ss_pred CeEEcC---CcEeCCCCCCccc
Q psy17795 504 NSIVLP---YKELTRSFKNEIL 522 (523)
Q Consensus 504 ~~~v~~---~~~i~~~~~~~~i 522 (523)
+..|+| +.++...+|+..+
T Consensus 212 gt~I~~~~~g~v~~g~vp~~sv 233 (272)
T PRK11830 212 STKIYDRETGEVHYGRVPAGSV 233 (272)
T ss_pred CeEECcCCCCcEEeeecCCCcE
Confidence 777774 5566666665443
No 105
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.44 E-value=1.2e-12 Score=122.90 Aligned_cols=117 Identities=22% Similarity=0.376 Sum_probs=87.9
Q ss_pred CCceEecCcEECCCCEECCCCEECC---CcEECCCCEECCCCEEe-----eeEECCCCEECCCCEEeceEECCCCEECCC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGP---NVSIDDGAVIGPGVRIK-----ESIILQGASIGNHSLVLNSIVGRNSKVGNW 452 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~---~~~Ig~~~~I~~~~~I~-----~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~ 452 (523)
+++.+.+++.|++++.|+++|+|.+ .++||++|.|+++|+|. +|+|+++|.|++++.|++|+|+++|.||.+
T Consensus 19 ~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg~~~~IG~g 98 (192)
T TIGR02287 19 PTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVGRNALVGMN 98 (192)
T ss_pred CCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEECCCCEECCC
Confidence 5778888999999999999999963 68999999999999993 599999999999999999999999999999
Q ss_pred cEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCCcEeCCCC
Q psy17795 453 SRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKELTRSF 517 (523)
Q Consensus 453 ~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i~~~~ 517 (523)
+.+.+ .+.|++++.+++++ +|..+..|.+++.+.+. |.+.++...
T Consensus 99 a~I~~----------g~~IG~~s~Vgags-------~V~~~~~ip~~~l~~G~---Pak~i~~~~ 143 (192)
T TIGR02287 99 AVVMD----------GAVIGENSIVAASA-------FVKAGAEMPAQYLVVGS---PAKVIRELS 143 (192)
T ss_pred cccCC----------CeEECCCCEEcCCC-------EECCCCEECCCeEEEcc---CCEEeccCC
Confidence 99865 24455554444333 22333344444444222 677766543
No 106
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.43 E-value=3.8e-12 Score=113.69 Aligned_cols=110 Identities=13% Similarity=0.108 Sum_probs=94.1
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEe-eeEECCCCEECCCCEEe---------ceEECCCCEEC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVL---------NSIVGRNSKVG 450 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~s~Ig~~~~Ig~~~~I~---------~~iIg~~~~Ig 450 (523)
+++.+.++++|++++.|++++.|..++.||++|.|+.++.|+ ++.||++|.|++++.|. .++|++++.|+
T Consensus 6 ~~~~i~~~~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~igg~~~~~~~~~v~Ig~~~~Ig 85 (139)
T cd03350 6 PGAIIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDVFIG 85 (139)
T ss_pred CCcEECCCCEECCCCEECCCCEEccCCEECCCeEEcCCCEECCCCEECCCCEECCCCEECCcccccccCCeEECCCCEEC
Confidence 467788888888888888888888888888888888888885 48899999999999885 48999999999
Q ss_pred CCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeC
Q psy17795 451 NWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLN 504 (523)
Q Consensus 451 ~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~ 504 (523)
++++|.+ .+.|++++.|+++++|.++ +.|+++ |+++++..
T Consensus 86 ~~a~I~~----------gv~Ig~~~~Ig~g~~V~~~-~~I~~~---~~~~~v~~ 125 (139)
T cd03350 86 ANCEVVE----------GVIVGKGAVLAAGVVLTQS-TPIYDR---ETGEIYYG 125 (139)
T ss_pred CCCEECC----------CCEECCCCEEcCCCEEcCC-eEeccc---CcccEEec
Confidence 9999965 4789999999999999999 677988 99998843
No 107
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.43 E-value=1.2e-12 Score=139.77 Aligned_cols=122 Identities=21% Similarity=0.350 Sum_probs=82.4
Q ss_pred CceEecCcEECCCCEECCCCEECC-----CcEECCCCEECCCCEEe-eeEECCCCEECCCCEEeceEECCCCEE------
Q psy17795 382 QCKTIGDVYIHSSASVHPTAIVGP-----NVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVLNSIVGRNSKV------ 449 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~~~~~I~~-----~~~Ig~~~~I~~~~~I~-~s~Ig~~~~Ig~~~~I~~~iIg~~~~I------ 449 (523)
++.|+++++|++++.|++++.|++ +++||++|.|++++.|. +++||++|.||++|.|.+++|++++.+
T Consensus 274 ~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~i 353 (446)
T PRK14353 274 DVVIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVNHLTYI 353 (446)
T ss_pred CCEECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCCEECCeeEE
Confidence 444555555555555555555543 57788888888888886 688888888888888776666655433
Q ss_pred -----CCCcEEcCCCCC---CCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeC
Q psy17795 450 -----GNWSRVEGTPCD---PNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLN 504 (523)
Q Consensus 450 -----g~~~~i~~~~~~---~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~ 504 (523)
|++|.|+..... .......+.||++++||.++.|.++ +.||++++||++++|..
T Consensus 354 ~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~-~~Ig~~~~ig~~s~v~~ 415 (446)
T PRK14353 354 GDATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAP-VTIGDGAYIASGSVITE 415 (446)
T ss_pred cCcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEEeCC-CEECCCCEECCCCEECc
Confidence 333333222110 0111235889999999999999999 67799999999999944
No 108
>PLN02296 carbonate dehydratase
Probab=99.41 E-value=2.4e-12 Score=126.56 Aligned_cols=117 Identities=16% Similarity=0.250 Sum_probs=90.7
Q ss_pred CCceEecCcEECCCCEECCCCEECCC---cEECCCCEECCCCEEe-----------eeEECCCCEECCCCEEeceEECCC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPN---VSIDDGAVIGPGVRIK-----------ESIILQGASIGNHSLVLNSIVGRN 446 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~---~~Ig~~~~I~~~~~I~-----------~s~Ig~~~~Ig~~~~I~~~iIg~~ 446 (523)
+++.+.+++.|++++.|+++++|.+. ++||++|.|+++|+|. +++||++|.||++|.|.+|+||++
T Consensus 63 p~A~V~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~g~~Igd~ 142 (269)
T PLN02296 63 PSASVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLHGCTVEDE 142 (269)
T ss_pred CCcEEEcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCceecCCEECCC
Confidence 57788889999999999999999765 5999999999999995 489999999999999999999999
Q ss_pred CEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCCcEeCCCC
Q psy17795 447 SKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKELTRSF 517 (523)
Q Consensus 447 ~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i~~~~ 517 (523)
|.||.+++|.. .++|++++.|++++. |..++.|++++++.+. |.+.+..-.
T Consensus 143 v~IG~ga~I~~----------gv~Ig~~a~IgagSv-------V~~~~~I~~~~~~~G~---PA~~ir~~~ 193 (269)
T PLN02296 143 AFVGMGATLLD----------GVVVEKHAMVAAGAL-------VRQNTRIPSGEVWAGN---PAKFLRKLT 193 (269)
T ss_pred cEECCCcEECC----------CeEECCCCEECCCCE-------EecCCEeCCCeEEecc---CcEEeCCCC
Confidence 99999999975 356666666665543 3444455555555332 444454433
No 109
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.41 E-value=6.7e-12 Score=119.68 Aligned_cols=138 Identities=17% Similarity=0.217 Sum_probs=91.8
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEe--------------------eeEECCCCEECCCCEEe-
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK--------------------ESIILQGASIGNHSLVL- 439 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~--------------------~s~Ig~~~~Ig~~~~I~- 439 (523)
+++.|.+++.|++++.|++++.|+.+++||++|.|+++++|+ .+.|++++.|++++.+.
T Consensus 30 ~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~ 109 (205)
T cd03352 30 PGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDGGGWVKIPQLGGVIIGDDVEIGANTTIDR 109 (205)
T ss_pred CCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEEcCCCceeEecCCcEEEcCCcceEEECCCEEECCCCEEec
Confidence 345555666666666666666666667777777777777773 36778888888887774
Q ss_pred ----ceEECCCCEECCCcEEcCCC-CCC-------CCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEE
Q psy17795 440 ----NSIVGRNSKVGNWSRVEGTP-CDP-------NPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIV 507 (523)
Q Consensus 440 ----~~iIg~~~~Ig~~~~i~~~~-~~~-------~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v 507 (523)
++.|++++.|++++.|.... ++. ....+.+.|+++++|+.++.+.++ +.||+++.|++++++.+. +
T Consensus 110 ~~~~~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~ig~~~~v~~~-~~ig~~~~i~~~s~v~~~-~ 187 (205)
T cd03352 110 GALGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGSTTIGDNVIIGGQVGIAGH-LTIGDGVVIGAGSGVTSI-V 187 (205)
T ss_pred cccCCeEECCCCEECCceEEeCCCEECCCCEECCCCEEccccEECCCeEEcCCCEEeCC-cEECCCCEEcCCCEEeeE-C
Confidence 35566666555555553211 111 112257889999999999999998 778999999999988743 4
Q ss_pred cCCcEeCCCCCCcc
Q psy17795 508 LPYKELTRSFKNEI 521 (523)
Q Consensus 508 ~~~~~i~~~~~~~~ 521 (523)
.++..+ .+.|+..
T Consensus 188 ~~~~~~-~G~pa~~ 200 (205)
T cd03352 188 PPGEYV-SGTPAQP 200 (205)
T ss_pred CCCCEE-EeecCch
Confidence 455544 4666543
No 110
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=99.40 E-value=7.9e-12 Score=129.19 Aligned_cols=201 Identities=13% Similarity=0.115 Sum_probs=127.1
Q ss_pred cccceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCe
Q psy17795 90 VSCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKI 169 (523)
Q Consensus 90 ~~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~ 169 (523)
+||.+.+|||||| .|+||.. ..||+|++++|+|||+|+++.|.+.+.+++|+||+++....+.+.+.. .+..
T Consensus 2 ~mm~v~aIILAAG--~GsRmg~---~~pKqll~l~GkPll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~~---~~~~ 73 (378)
T PRK09382 2 LMSDISLVIVAAG--RSTRFSA---EVKKQWLRIGGKPLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKALP---EIKF 73 (378)
T ss_pred CCCcceEEEECCC--CCccCCC---CCCeeEEEECCeeHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhcc---cCCe
Confidence 5678899999999 9999964 689999999999999999999998744799999998754443333222 1111
Q ss_pred eEEEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc----c-chHH---HHHHHHhcCCcceE
Q psy17795 170 NIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE----I-RSDV---VILMHSLYSMAILV 239 (523)
Q Consensus 170 ~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~----i-~~D~---l~~~h~~~~~~~~~ 239 (523)
+.++.... + ..++++ .+++. .+. +|+.. + -.+. +++..+ . ...
T Consensus 74 -v~~v~gG~--~-----------------r~~SV~~gL~~l~--~d~-VLVhdadrPfv~~e~I~~li~~~~--~--~~a 126 (378)
T PRK09382 74 -VTLVTGGA--T-----------------RQESVRNALEALD--SEY-VLIHDAARPFVPKELIDRLIEALD--K--ADC 126 (378)
T ss_pred -EEEeCCCc--h-----------------HHHHHHHHHHhcC--CCe-EEEeeccccCCCHHHHHHHHHHhh--c--CCe
Confidence 33332211 1 446676 55554 244 55544 1 1233 333332 2 456
Q ss_pred EEEEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCCC
Q psy17795 240 TVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDT 319 (523)
Q Consensus 240 tv~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~ 319 (523)
++.+.++. ++..|+...+|. ..+..+ ++|+.+.... +.+.. +++++
T Consensus 127 ~i~~~pv~--Dtik~~~~tldR--~~l~~~-QTPQ~f~~~~---------------l~~a~---~~~~~----------- 172 (378)
T PRK09382 127 VLPALPVA--DTLKRANETVDR--EGLKLI-QTPQLSRTKT---------------LKAAA---DGRGD----------- 172 (378)
T ss_pred EEEEEEec--cCcEEeeeEcCc--ccEEEE-ECCCCCCHHH---------------HHHHH---hCCCC-----------
Confidence 67777763 556777655654 356555 7887643322 11111 11222
Q ss_pred CcccccchhhhhhhhhcCCc-EEEEEcchhHhhhccchhhhhccHHHH
Q psy17795 320 DFNHIQLEKEIIMPLAGSGK-AYVYQTSKWWSQLKSAGSAIYANRHYL 366 (523)
Q Consensus 320 ~~~~~~~~~dil~~li~~g~-v~~~~~~g~w~dIgt~~dyl~an~~~l 366 (523)
+ +|..+.+...|. +..+..+..|..+.+|+|+..+...+.
T Consensus 173 ------~-TDd~sl~~~~G~~V~~v~g~~~n~KITtpeDL~~A~~~l~ 213 (378)
T PRK09382 173 ------F-TDDSSAAEAAGGKVALVEGSEDLHKLTYKEDLKMADLLLS 213 (378)
T ss_pred ------c-ccHHHHHHHcCCcEEEEECCCcccCCCCHHHHHHHHHHhc
Confidence 2 455666666664 888889999999999999988877543
No 111
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.40 E-value=2.5e-12 Score=116.14 Aligned_cols=96 Identities=24% Similarity=0.350 Sum_probs=84.0
Q ss_pred CCceEecCcEECCCCEECCCCEEC---CCcEECCCCEECCCCEEee-----eEECCCCEECCCCEEeceEECCCCEECCC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVG---PNVSIDDGAVIGPGVRIKE-----SIILQGASIGNHSLVLNSIVGRNSKVGNW 452 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~---~~~~Ig~~~~I~~~~~I~~-----s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~ 452 (523)
+++.+.+++.|++++.|+++++|+ +...||+++.|.++|+|.. +.||++|+||+++.|++|.|+++|.||-+
T Consensus 22 ~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHGc~Ig~~~lIGmg 101 (176)
T COG0663 22 PSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHGCTIGDNVLIGMG 101 (176)
T ss_pred CCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEEeEECCCcEEecC
Confidence 688899999999999999999997 5689999999999999965 89999999999999999999999999999
Q ss_pred cEEcCCCCCCCCCCCceecCCCCeecCCCeecCC
Q psy17795 453 SRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPS 486 (523)
Q Consensus 453 ~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g 486 (523)
++|-+ .++||++|+||+++.|.++
T Consensus 102 A~vld----------ga~IG~~~iVgAgalV~~~ 125 (176)
T COG0663 102 ATVLD----------GAVIGDGSIVGAGALVTPG 125 (176)
T ss_pred ceEeC----------CcEECCCcEEccCCcccCC
Confidence 99976 2567777776666655444
No 112
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.40 E-value=3.1e-12 Score=136.91 Aligned_cols=120 Identities=18% Similarity=0.279 Sum_probs=77.8
Q ss_pred CEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCCCCCCCceecCCC
Q psy17795 395 ASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNP 474 (523)
Q Consensus 395 ~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~ 474 (523)
+.|++++.|.+++.|+++|.|++++.|+++.||+++.+++.+.+.+|.||++|.||+++.+.+.. ......++||++
T Consensus 324 ~~Ig~~~~i~~~~~i~~~~~ig~~~~i~~~~i~~~~~~~~~~~~g~~~ig~~~~ig~~~~~~~~~---~~~~~~~~Igd~ 400 (456)
T PRK09451 324 CTIGPFARLRPGAELAEGAHVGNFVEMKKARLGKGSKAGHLTYLGDAEIGDNVNIGAGTITCNYD---GANKFKTIIGDD 400 (456)
T ss_pred cEecCceEEeCCCEECCCceeccceeeeceeeCCCCccCccccccccEECCCCEEcCCeEEeccc---CcccCCCEECCC
Confidence 33333333333444444444444444555566666666666666677888888888887775421 112234889999
Q ss_pred CeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCCcEeCCCCCC
Q psy17795 475 PLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKELTRSFKN 519 (523)
Q Consensus 475 ~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i~~~~~~ 519 (523)
++||.++.|.++ +.||++++|++|++|...+ .++..+..+.|.
T Consensus 401 ~~ig~~~~i~~~-~~ig~~~~i~~gs~v~~~v-~~~~~~~~~~~~ 443 (456)
T PRK09451 401 VFVGSDTQLVAP-VTVGKGATIGAGTTVTRDV-AENELVISRVPQ 443 (456)
T ss_pred cEECCCCEEeCC-cEECCCCEECCCCEEcccc-CCCCEEEeccCc
Confidence 999999999999 6679999999999996543 455555444443
No 113
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.39 E-value=2.7e-12 Score=136.39 Aligned_cols=108 Identities=17% Similarity=0.137 Sum_probs=77.9
Q ss_pred CcEECCCCEECCCCEEeeeEECC----------CCEECCCCEEeceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCC
Q psy17795 406 NVSIDDGAVIGPGVRIKESIILQ----------GASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPP 475 (523)
Q Consensus 406 ~~~Ig~~~~I~~~~~I~~s~Ig~----------~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~ 475 (523)
+++||++|.|++++.|.+|.||+ ++.||+.+.|.+|+||++|.||+++.+.+.. ...+..+.||+++
T Consensus 298 ~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~~~~~~i~~~~~i~d~~Ig~~~~ig~~~~~~~~~---~~~~~~~~ig~~~ 374 (430)
T PRK14359 298 NSDVGPLAHIRPKSEIKNTHIGNFVETKNAKLNGVKAGHLSYLGDCEIDEGTNIGAGTITCNYD---GKKKHKTIIGKNV 374 (430)
T ss_pred CCEECCCCEECCCcEEeccEEcCcEEEcccEeccccccccccccCCEECCCCEECCCceEcccc---CccCcCCEECCCe
Confidence 44555555555555555544444 4577777888899999999999999887632 1222357899999
Q ss_pred eecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCCcEeCCCCC
Q psy17795 476 LFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKELTRSFK 518 (523)
Q Consensus 476 ~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i~~~~~ 518 (523)
++|.++.|.++ +.||++++||+|++|.+. +.++..+..+.|
T Consensus 375 ~ig~~~~i~~~-~~ig~~~~i~~g~~v~~~-v~~~~~~~~~~~ 415 (430)
T PRK14359 375 FIGSDTQLVAP-VNIEDNVLIAAGSTVTKD-VPKGSLAISRAP 415 (430)
T ss_pred EEcCCCEEeCC-cEECCCCEECCCCEEccc-cCCCcEEEeccC
Confidence 99999999999 677999999999999544 345555544444
No 114
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.39 E-value=4.8e-12 Score=122.71 Aligned_cols=100 Identities=13% Similarity=0.169 Sum_probs=68.1
Q ss_pred CceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEee-eEECCCCEECCCCEE---------eceEECCCCEECC
Q psy17795 382 QCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE-SIILQGASIGNHSLV---------LNSIVGRNSKVGN 451 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~-s~Ig~~~~Ig~~~~I---------~~~iIg~~~~Ig~ 451 (523)
++.+.++++|++++.|.++ .|..++.||++|.|+.+++|++ +.||++|.|+.++.| .+++||++|.||+
T Consensus 106 ~a~i~~ga~Ig~~vvI~p~-~Vniga~IGeGt~I~~~a~IG~~v~IG~nv~I~~g~~IgG~~ep~~~~~ViIgDnv~IGa 184 (269)
T TIGR00965 106 GAAVRQGAFIAKNVVLMPS-YVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGA 184 (269)
T ss_pred CcEECCCcEECCCCEEeee-EEcCCcEECCCCEECCCcEECCCCEECCCCEEcCCcccCCCcccCCCCCeEECCCCEECC
Confidence 4444455555555555543 3445567777777777777754 777777777777776 3578999999999
Q ss_pred CcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCC
Q psy17795 452 WSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDG 493 (523)
Q Consensus 452 ~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~ 493 (523)
+|.|.+ .++|++++.||++++|.++ +.|++.
T Consensus 185 ~a~I~~----------GV~IG~gavIGaGavI~~~-~~I~~~ 215 (269)
T TIGR00965 185 RSEIVE----------GVIVEEGSVISMGVFIGQS-TKIYDR 215 (269)
T ss_pred CCEEcC----------CCEECCCCEEeCCCEECCC-CEEecc
Confidence 999965 3678888888777777776 444554
No 115
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.39 E-value=9.5e-12 Score=113.04 Aligned_cols=96 Identities=23% Similarity=0.266 Sum_probs=81.4
Q ss_pred CCceEecCcEECCCCEECCCCEECCC---cEECCCCEECCCCEEee-----eEECCCCEECCCCEEeceEECCCCEECCC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPN---VSIDDGAVIGPGVRIKE-----SIILQGASIGNHSLVLNSIVGRNSKVGNW 452 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~---~~Ig~~~~I~~~~~I~~-----s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~ 452 (523)
+++.|.+++.||+++.|++++.|.+. ++||++|.|+++|.|.. ++||+++.|++++.+.+++||+++.|+.+
T Consensus 11 ~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~ 90 (154)
T cd04650 11 PTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNYVIVGMG 90 (154)
T ss_pred CCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECCCCEEcCC
Confidence 56778888999999999999988765 79999999999999976 89999999999999999999999999999
Q ss_pred cEEcCCCCCCCCCCCceecCCCCeecCCCeecCC
Q psy17795 453 SRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPS 486 (523)
Q Consensus 453 ~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g 486 (523)
+.+.+ .+.|+++++++.++.+.++
T Consensus 91 ~~i~~----------~~~Ig~~~~vg~~~~v~~g 114 (154)
T cd04650 91 AILLN----------GAKIGDHVIIGAGAVVTPG 114 (154)
T ss_pred CEEeC----------CCEECCCCEECCCCEECCC
Confidence 99965 2567777766655544443
No 116
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=99.37 E-value=5.6e-11 Score=115.97 Aligned_cols=209 Identities=15% Similarity=0.075 Sum_probs=124.3
Q ss_pred EEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEEEe
Q psy17795 96 TNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRYLQ 175 (523)
Q Consensus 96 ~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~ 175 (523)
+||+|+| .|+||. +|+|++++|+|||.|+++++.+. ++++|+|++.. +.+.+++.+ ++.++....
T Consensus 2 ~iIpA~g--~s~R~~------~K~L~~l~GkPli~~~le~~~~~-~~d~VvVvt~~--~~i~~~~~~----~g~~~v~~~ 66 (238)
T TIGR00466 2 VIIPARL--ASSRLP------GKPLEDIFGKPMIVHVAENANES-GADRCIVATDD--ESVAQTCQK----FGIEVCMTS 66 (238)
T ss_pred EEEecCC--CCCCCC------CCeecccCCcCHHHHHHHHHHhC-CCCeEEEEeCH--HHHHHHHHH----cCCEEEEeC
Confidence 7999999 999994 69999999999999999999986 79999998864 456666554 454432222
Q ss_pred cccccchhhhhcccccccccCCCchhHHH-Hhhcc-cCCcceEEEEc-----cchHH---HHHHHHhcCCcceEEEEEEe
Q psy17795 176 EFWDIIHQQICISLYWTWYRNTRSTYGIY-RNSLH-WVQEAVYFTLE-----IRSDV---VILMHSLYSMAILVTVMATE 245 (523)
Q Consensus 176 ~~~~~g~~~~~~~~~~~~~~g~~ta~al~-~~~i~-~~~d~~~Lvl~-----i~~D~---l~~~h~~~~~~~~~tv~~~~ 245 (523)
+....| +..... ...+. ...+. ++++. +--+. +++.+.... .++++++.+
T Consensus 67 ~~~~~G-----------------t~r~~~~~~~l~~~~~d~-Vli~~gD~Pli~~~~I~~li~~~~~~~--~~~a~~~~~ 126 (238)
T TIGR00466 67 KHHNSG-----------------TERLAEVVEKLALKDDER-IVNLQGDEPFIPKEIIRQVADNLATKN--VPMAALAVK 126 (238)
T ss_pred CCCCCh-----------------hHHHHHHHHHhCCCCCCE-EEEEcCCcCcCCHHHHHHHHHHHhcCC--CCEEEEeee
Confidence 323333 222222 22222 11233 55554 22222 555554444 566777766
Q ss_pred eCCCCC---cceeEEEEcCCCCcEEEEeecCC-----------Ccc--cceeeeeEEEeeHHHHHHHHHhhccccccccc
Q psy17795 246 ATRQQS---VYYGCIVRKQQTSEISHYVEKPS-----------TFV--STLVNCGVYLFSLDIFQNIAAVFQSKQDEFYN 309 (523)
Q Consensus 246 ~~~~~~---~~~g~v~~d~~~~~V~~~~ekp~-----------~~~--~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~ 309 (523)
...... .+...++.|.+ |+++-|...+. .+. ..+...|+|.|+++.|..+....... ++
T Consensus 127 ~~d~~~~~~p~~vk~v~~~~-g~alyfsr~~ip~~R~~~~~~~tpq~~~~~~h~Giy~~~~~~L~~~~~~~~~~---le- 201 (238)
T TIGR00466 127 IHDAEEAFNPNAVKVVLDSQ-GYALYFSRSLIPFDRDFFAKRQTPVGDNLLRHIGIYGYRAGFIEEYVAWKPCV---LE- 201 (238)
T ss_pred cCCHHHccCCCceEEEeCCC-CeEEEecCCCCCCCCCcccccccccccceeEEEEEEeCCHHHHHHHHhCCCCc---cc-
Confidence 532110 11334444655 77766665421 111 14678999999999998877643221 10
Q ss_pred ccccccCCCCCcccccchhhhhhhhhcCCcEEEEEcchh-Hhhhccchhh
Q psy17795 310 GNYMVNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSKW-WSQLKSAGSA 358 (523)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~dil~~li~~g~v~~~~~~g~-w~dIgt~~dy 358 (523)
...++ |-+..|...-++.+...+.. -..++|++|+
T Consensus 202 ------------~~e~l--eqlr~le~g~~i~~~~~~~~~~~~vdt~~d~ 237 (238)
T TIGR00466 202 ------------EIEKL--EQLRVLYYGEKIHVKIAQEVPSVGVDTQEDL 237 (238)
T ss_pred ------------ccchh--HHHhhhhcCCceEEEEeCCCCCCCCCChHHc
Confidence 11122 55555554445877776554 3489999886
No 117
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=99.37 E-value=3.2e-11 Score=116.88 Aligned_cols=211 Identities=13% Similarity=0.120 Sum_probs=124.7
Q ss_pred ccceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCCh-HHHHHHHHhhhhccCe
Q psy17795 91 SCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPS-ADLQKFVLDMVQEYKI 169 (523)
Q Consensus 91 ~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~-~~i~~~l~~~~~~~~~ 169 (523)
||.+.+|||||| .|+||+. ..||+|++++|+|||+|+++++.+...+++|+|++++.. +.+.+.+.. .. .
T Consensus 1 ~~~~~~iILAaG--~s~R~g~---~~~K~l~~~~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~---~~-~ 71 (227)
T PRK00155 1 MMMVYAIIPAAG--KGSRMGA---DRPKQYLPLGGKPILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLLA---KD-P 71 (227)
T ss_pred CCceEEEEEcCc--cccccCC---CCCceeeEECCEEHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhhc---cC-C
Confidence 467789999999 9999964 579999999999999999999987645899999998754 344333321 11 1
Q ss_pred eEEEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc-----cchHH---HHHHHHhcCCcceE
Q psy17795 170 NIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE-----IRSDV---VILMHSLYSMAILV 239 (523)
Q Consensus 170 ~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~-----i~~D~---l~~~h~~~~~~~~~ 239 (523)
.+.++.... + .+++++ .+++.+ .+. +|++. +-.+. +++.+...+ .
T Consensus 72 ~~~~~~~~~--~-----------------~~~sv~~~l~~~~~-~d~-vlv~~~D~P~i~~~~i~~li~~~~~~~----~ 126 (227)
T PRK00155 72 KVTVVAGGA--E-----------------RQDSVLNGLQALPD-DDW-VLVHDAARPFLTPDDIDRLIEAAEETG----A 126 (227)
T ss_pred ceEEeCCcc--h-----------------HHHHHHHHHHhCCC-CCE-EEEccCccCCCCHHHHHHHHHHHhhCC----C
Confidence 233332211 1 456776 555532 345 66654 22233 555554432 2
Q ss_pred EEEEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCCC
Q psy17795 240 TVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDT 319 (523)
Q Consensus 240 tv~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~ 319 (523)
++++.+.. + .+..+ +++ |.+.++.+. ....... +.|.|+.+.+..+.+... .+++|+
T Consensus 127 ~~~~~~~~--~--~~~~v--~~~-g~~~~~~~r---~~~~~~~-~p~~f~~~~l~~~~~~~~--~~~~~~---------- 183 (227)
T PRK00155 127 AILAVPVK--D--TIKRS--DDG-GGIVDTPDR---SGLWAAQ-TPQGFRIELLREALARAL--AEGKTI---------- 183 (227)
T ss_pred EEEEEecc--c--cEEEE--cCC-CceeecCCh---HHheeee-CCccchHHHHHHHHHHHH--hcCCCc----------
Confidence 33333432 1 12322 443 666665432 1122233 478899887665543221 234444
Q ss_pred CcccccchhhhhhhhhcCC-cEEEEEcchhHhhhccchhhhhccHHHH
Q psy17795 320 DFNHIQLEKEIIMPLAGSG-KAYVYQTSKWWSQLKSAGSAIYANRHYL 366 (523)
Q Consensus 320 ~~~~~~~~~dil~~li~~g-~v~~~~~~g~w~dIgt~~dyl~an~~~l 366 (523)
+|....+.+.+ .+..+..+..+.+|+|++|+..+...+.
T Consensus 184 --------~d~~~~~~~~~~~i~~~~~~~~~~~Idt~~Dl~~ae~~~~ 223 (227)
T PRK00155 184 --------TDDASAVERLGKPVRLVEGRYDNIKITTPEDLALAEAILK 223 (227)
T ss_pred --------CcHHHHHHHcCCCeEEEecCcccccCCCHHHHHHHHHHHH
Confidence 23333334444 3777766666779999999988866543
No 118
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.36 E-value=1.3e-11 Score=113.76 Aligned_cols=110 Identities=25% Similarity=0.318 Sum_probs=93.8
Q ss_pred CCceEecCcEECCCCEECCCCEECC----CcEECCCCEECCCCEEe-----eeEECCCCEECCCCEEec-eEECCCCEEC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGP----NVSIDDGAVIGPGVRIK-----ESIILQGASIGNHSLVLN-SIVGRNSKVG 450 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~----~~~Ig~~~~I~~~~~I~-----~s~Ig~~~~Ig~~~~I~~-~iIg~~~~Ig 450 (523)
+++.+.+++.|+++++|++++.|+. ++.||++|.|++++.|. .+.||++|.|++++.|.+ ++||++|.||
T Consensus 13 ~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~Ig~~~~Ig 92 (167)
T cd00710 13 PTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIGDNCFIG 92 (167)
T ss_pred CCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEEECCCCEEC
Confidence 5777888888999999999998865 47999999999999995 488999999999999985 9999999999
Q ss_pred CCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEe
Q psy17795 451 NWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVL 503 (523)
Q Consensus 451 ~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~ 503 (523)
.+|.|.+ +.|++++.||+++.|. + +.|++++.+++++++.
T Consensus 93 ~~~~I~~-----------~~Ig~~~~Ig~~s~i~-~-~~i~~~~~v~~~~~v~ 132 (167)
T cd00710 93 FRSVVFN-----------AKVGDNCVIGHNAVVD-G-VEIPPGRYVPAGAVIT 132 (167)
T ss_pred CCCEEEC-----------CEECCCCEEcCCCEEe-C-CEeCCCCEECCCCEEc
Confidence 9999964 5789999999988773 4 5668888888887774
No 119
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.36 E-value=5.3e-12 Score=101.78 Aligned_cols=79 Identities=19% Similarity=0.384 Sum_probs=70.9
Q ss_pred ECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCCCCCCCcee
Q psy17795 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPNKAFAK 470 (523)
Q Consensus 391 i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~ 470 (523)
|++++.|++++.|. ++.||++|.|++++.|.+++|++++.|++++.|.+++|++++.|++++.+.+
T Consensus 2 ig~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v~~------------- 67 (81)
T cd04652 2 VGENTQVGEKTSIK-RSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLKD------------- 67 (81)
T ss_pred ccCCCEECCCCEEe-CcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCCCEECCCCEEcc-------------
Confidence 67888888888885 7999999999999999999999999999999999999999999999999976
Q ss_pred cCCCCeecCCCeecCCcEEeCCCCEECCCc
Q psy17795 471 MDNPPLFNSNGKLNPSITILGDGVTVPGEL 500 (523)
Q Consensus 471 I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~ 500 (523)
++||+++.|++++
T Consensus 68 -----------------~ii~~~~~i~~~~ 80 (81)
T cd04652 68 -----------------CLVGSGYRVEAGT 80 (81)
T ss_pred -----------------CEECCCcEeCCCC
Confidence 7778888887764
No 120
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.36 E-value=8.5e-12 Score=100.32 Aligned_cols=67 Identities=46% Similarity=0.775 Sum_probs=62.6
Q ss_pred ECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcC
Q psy17795 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEG 457 (523)
Q Consensus 391 i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~ 457 (523)
|++++.|++++.|+++++|+++|.|++++.|.+++|++++.|++++.|.++++++++.|++++.+.+
T Consensus 2 i~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~~~ 68 (80)
T cd05824 2 IDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLEN 68 (80)
T ss_pred cCCCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCCCEECCCcEEec
Confidence 5788888888889899999999999999999999999999999999999999999999999999965
No 121
>PLN02472 uncharacterized protein
Probab=99.36 E-value=1.2e-11 Score=120.14 Aligned_cols=77 Identities=18% Similarity=0.235 Sum_probs=69.8
Q ss_pred CCceEecCcEECCCCEECCCCEECCC---cEECCCCEECCCCEEe-----------eeEECCCCEECCCCEEeceEECCC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPN---VSIDDGAVIGPGVRIK-----------ESIILQGASIGNHSLVLNSIVGRN 446 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~---~~Ig~~~~I~~~~~I~-----------~s~Ig~~~~Ig~~~~I~~~iIg~~ 446 (523)
+++.+.++++|++++.|+++++|.++ ++||++|.|+++|+|+ +++||++|.||++|.|.+|+|+++
T Consensus 70 p~a~i~G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L~~~~Igd~ 149 (246)
T PLN02472 70 PNVVLAGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLRSCTIEPE 149 (246)
T ss_pred CCCEEecCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEECCeEEcCC
Confidence 67888899999999999999998654 8999999999999994 489999999999999999999999
Q ss_pred CEECCCcEEcC
Q psy17795 447 SKVGNWSRVEG 457 (523)
Q Consensus 447 ~~Ig~~~~i~~ 457 (523)
|.||.+|+|..
T Consensus 150 v~IG~~svI~~ 160 (246)
T PLN02472 150 CIIGQHSILME 160 (246)
T ss_pred CEECCCCEECC
Confidence 99999999865
No 122
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.35 E-value=1.2e-11 Score=132.64 Aligned_cols=131 Identities=14% Similarity=0.224 Sum_probs=92.5
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEe-ceEECCCCEECCC-------
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVL-NSIVGRNSKVGNW------- 452 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~------- 452 (523)
+++.|.+++.|++++.|+++++| .+++||++|+|+++++|.+++|+++|.||++++|. ++.|++++.||++
T Consensus 279 ~~~~I~~~~~Ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~~~~~~ 357 (459)
T PRK14355 279 PGVCISGDTRIGEGCTIEQGVVI-KGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFVETKKIV 357 (459)
T ss_pred CCcEEeCCCEECCCCEECCCCEE-eCCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCCCEECCCccccCCE
Confidence 45667777777788888888877 46888999999999988888888888888777775 4555554444433
Q ss_pred ---------------------cEEcCCCCCC---CCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEc
Q psy17795 453 ---------------------SRVEGTPCDP---NPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVL 508 (523)
Q Consensus 453 ---------------------~~i~~~~~~~---~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~ 508 (523)
|.|+...+.. ......+.||+++++|.++.|.++ +.||++++|+++++|... |.
T Consensus 358 ig~~~~~~~~~~ig~~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~-~~ig~~~~i~a~s~v~~~-v~ 435 (459)
T PRK14355 358 MGEGSKASHLTYLGDATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAP-VTVGRNSLIAAGTTVTKD-VP 435 (459)
T ss_pred ECCCceeeeeccccCCEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCEEeCC-cEECCCCEECCCCEEccc-CC
Confidence 2332221111 112345789999999999999999 777999999999999533 34
Q ss_pred CCcEeC
Q psy17795 509 PYKELT 514 (523)
Q Consensus 509 ~~~~i~ 514 (523)
++..+.
T Consensus 436 ~~~~~~ 441 (459)
T PRK14355 436 PDSLAI 441 (459)
T ss_pred CCcEEE
Confidence 444443
No 123
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.35 E-value=9.2e-12 Score=107.89 Aligned_cols=115 Identities=17% Similarity=0.221 Sum_probs=78.8
Q ss_pred ECCCCEECCCCEECCCcEECCCCEECCCCEEe-eeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCCCCCCCce
Q psy17795 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPNKAFA 469 (523)
Q Consensus 391 i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v 469 (523)
|++++.|++++.|+++++||++|.|++++.|+ +++||++|.|++++.+.++.+.... +..++.+. .+
T Consensus 1 ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~-~~~~~~~~-----------~~ 68 (119)
T cd03358 1 IGDNCIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRSK-IYRKWELK-----------GT 68 (119)
T ss_pred CCCCCEECCCcEECCCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCccc-cccccccC-----------Cc
Confidence 35667777777777777777777777777774 4777788888877777665443332 33334443 36
Q ss_pred ecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCCcEeCCCCCCc
Q psy17795 470 KMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKELTRSFKNE 520 (523)
Q Consensus 470 ~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i~~~~~~~ 520 (523)
.|+++++|+.++.+.++ ++||+++.|++++++... +.++..+ .+.|++
T Consensus 69 ~Ig~~~~Ig~~~~v~~~-~~ig~~~~i~~~~~v~~~-i~~~~~~-~G~pa~ 116 (119)
T cd03358 69 TVKRGASIGANATILPG-VTIGEYALVGAGAVVTKD-VPPYALV-VGNPAR 116 (119)
T ss_pred EECCCcEECcCCEEeCC-cEECCCCEEccCCEEeCc-CCCCeEE-ecCcce
Confidence 78888888888888888 778999999999988654 4444333 455554
No 124
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.34 E-value=6.4e-12 Score=134.54 Aligned_cols=120 Identities=19% Similarity=0.307 Sum_probs=73.2
Q ss_pred eEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEe-ceEECCCCEECCCcE--------
Q psy17795 384 KTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVL-NSIVGRNSKVGNWSR-------- 454 (523)
Q Consensus 384 ~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~-------- 454 (523)
.+.+++.|++++.|++++.| .+++||++|.|+++|.|.+++||++|.||++++|. +++||++|.||.++.
T Consensus 283 ~i~~~~~ig~~~~I~~~~~i-~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~ 361 (456)
T PRK14356 283 EIYGASRIARGAVIHSHCWL-RDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKKAVLGK 361 (456)
T ss_pred EEeCceEECCCCEECCCeEE-EeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEecCCceeeeeEecC
Confidence 34445566666666666655 34556666666666655555555555555555554 444444444433322
Q ss_pred --------------------EcCCCCCCC---CCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCe
Q psy17795 455 --------------------VEGTPCDPN---PNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNS 505 (523)
Q Consensus 455 --------------------i~~~~~~~~---~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~ 505 (523)
|+...+..+ .....+.||+++++|.++.+.++ +.||++++|+++++|...
T Consensus 362 ~~~i~~~~~ig~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig~~~~i~~~-~~ig~~~~i~~~~~v~~~ 434 (456)
T PRK14356 362 GAKANHLTYLGDAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSNTALVAP-VTIGDGALVGAGSVITKD 434 (456)
T ss_pred CcEecccccccCeEECCCCEECCCceeeccccccCCCCEECCCcEEcCCCEEeCC-cEECCCCEEcCCCEEecc
Confidence 111111001 11245899999999999999999 778999999999999543
No 125
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.34 E-value=1.7e-11 Score=111.27 Aligned_cols=96 Identities=19% Similarity=0.289 Sum_probs=81.8
Q ss_pred CCceEecCcEECCCCEECCCCEECC---CcEECCCCEECCCCEEee-----eEECCCCEECCCCEEeceEECCCCEECCC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGP---NVSIDDGAVIGPGVRIKE-----SIILQGASIGNHSLVLNSIVGRNSKVGNW 452 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~---~~~Ig~~~~I~~~~~I~~-----s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~ 452 (523)
+.+.|.+++.|++++.|++++.|.+ +++||++|.|+++|.|.. ++||++|.|+.+|.|.+++|++++.|+++
T Consensus 10 ~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~ 89 (153)
T cd04645 10 PNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDNCLIGMG 89 (153)
T ss_pred CCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECCCCEECCC
Confidence 5778888899999999999998865 469999999999999977 59999999999999999999999999999
Q ss_pred cEEcCCCCCCCCCCCceecCCCCeecCCCeecCC
Q psy17795 453 SRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPS 486 (523)
Q Consensus 453 ~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g 486 (523)
+.+.+ .++|+++++++.++.+.++
T Consensus 90 ~~v~~----------~~~ig~~~~ig~~~~v~~~ 113 (153)
T cd04645 90 AIILD----------GAVIGKGSIVAAGSLVPPG 113 (153)
T ss_pred CEEcC----------CCEECCCCEECCCCEECCC
Confidence 99975 3567777777666544443
No 126
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=99.34 E-value=3.7e-11 Score=115.52 Aligned_cols=202 Identities=13% Similarity=0.155 Sum_probs=123.4
Q ss_pred EEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCCh-HHHHHHHHhhhhccCeeEEEE
Q psy17795 96 TNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPS-ADLQKFVLDMVQEYKINIRYL 174 (523)
Q Consensus 96 ~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~-~~i~~~l~~~~~~~~~~i~~~ 174 (523)
+|||||| .|+||+. ..||+|++++|+|||+|+++.+.+..++++++|++++.. +.+.+++.. .. .+.++
T Consensus 2 aiIlAaG--~s~R~~~---~~~K~l~~l~gkpll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~---~~--~~~~~ 71 (217)
T TIGR00453 2 AVIPAAG--RGTRFGS---GVPKQYLELGGRPLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLVA---RA--VPKIV 71 (217)
T ss_pred EEEEcCc--ccccCCC---CCCccEeEECCeEHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhhc---CC--cEEEe
Confidence 7999999 9999985 579999999999999999999998547999999998743 445444432 11 12333
Q ss_pred ecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc-----cchHH---HHHHHHhcCCcceEEEEEE
Q psy17795 175 QEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE-----IRSDV---VILMHSLYSMAILVTVMAT 244 (523)
Q Consensus 175 ~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~-----i~~D~---l~~~h~~~~~~~~~tv~~~ 244 (523)
.... + ..++++ ..++. ..+. +|++. +-.+. +++.+.+. +.++++.
T Consensus 72 ~~~~--~-----------------~~~sl~~~l~~~~-~~d~-vlv~~~D~P~i~~~~i~~li~~~~~~----~~~~~~~ 126 (217)
T TIGR00453 72 AGGD--T-----------------RQDSVRNGLKALK-DAEW-VLVHDAARPFVPKELLDRLLEALRKA----GAAILAL 126 (217)
T ss_pred CCCc--h-----------------HHHHHHHHHHhCC-CCCE-EEEccCccCCCCHHHHHHHHHHHhhC----CcEEEeE
Confidence 2211 1 235565 44442 2345 66655 22233 44444332 2334444
Q ss_pred eeCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCCCCcccc
Q psy17795 245 EATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHI 324 (523)
Q Consensus 245 ~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 324 (523)
+. ..+...+|++ |.+..+.++. ....+.+ .|.|+...+..+..... ..++|+
T Consensus 127 ~~------~~~v~~~~~~-g~~~~~~~r~---~~~~~~~-p~~f~~~~l~~~~~~~~--~~~~~~--------------- 178 (217)
T TIGR00453 127 PV------ADTLKRVEAD-GFIVETVDRE---GLWAAQT-PQAFRTELLKKALARAK--EEGFEI--------------- 178 (217)
T ss_pred ec------cceEEEEcCC-CceeecCChH---HeEEEeC-CCcccHHHHHHHHHHHH--hcCCCC---------------
Confidence 43 2344455654 7788777642 2234444 68899887765543221 124443
Q ss_pred cchhhhhhhhhcCC-cEEEEEcchhHhhhccchhhhhccH
Q psy17795 325 QLEKEIIMPLAGSG-KAYVYQTSKWWSQLKSAGSAIYANR 363 (523)
Q Consensus 325 ~~~~dil~~li~~g-~v~~~~~~g~w~dIgt~~dyl~an~ 363 (523)
+|....+.+.| ++..+..+....+|++++|+-.+..
T Consensus 179 ---~d~~~~~~~~g~~i~~~~~~~~~~~I~~~~Dl~~ae~ 215 (217)
T TIGR00453 179 ---TDDASAVEKLGGKVALVEGDALNFKITTPEDLALAEA 215 (217)
T ss_pred ---CcHHHHHHHcCCCeEEEecCccccccCCHHHHHHHHH
Confidence 34444444445 3777777666679999999876643
No 127
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.33 E-value=5e-12 Score=127.43 Aligned_cols=95 Identities=23% Similarity=0.424 Sum_probs=67.7
Q ss_pred CEECCCcEECCCCEECCCCEE-eeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecC
Q psy17795 401 AIVGPNVSIDDGAVIGPGVRI-KESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNS 479 (523)
Q Consensus 401 ~~I~~~~~Ig~~~~I~~~~~I-~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~ 479 (523)
..|+..+.||++|+|.+++.| +++.||++|.||++|.|.+|.|++++.|.++++|.++ .|++++.||.
T Consensus 263 ~~i~~dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s-----------~vg~~~~VGP 331 (460)
T COG1207 263 TYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGS-----------TVGEGATVGP 331 (460)
T ss_pred EEEcCcEEECCceEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeecc-----------EecCCcccCC
Confidence 346677788888888888888 6689999999999999999999999999998998775 3444455555
Q ss_pred CCeecCCcEEeCCCCEECCCcEEeCeEE
Q psy17795 480 NGKLNPSITILGDGVTVPGELIVLNSIV 507 (523)
Q Consensus 480 ~~~i~~g~~iIG~~~~Ig~~~~i~~~~v 507 (523)
.+.+++| +.|++++.||..+-+.++.|
T Consensus 332 fA~LRPg-~~L~~~~hIGNFVEvK~a~i 358 (460)
T COG1207 332 FARLRPG-AVLGADVHIGNFVEVKKATI 358 (460)
T ss_pred ccccCCc-CcccCCCeEeeeEEEecccc
Confidence 5555555 44455444444444433333
No 128
>KOG1462|consensus
Probab=99.32 E-value=3.7e-12 Score=126.33 Aligned_cols=95 Identities=19% Similarity=0.335 Sum_probs=83.3
Q ss_pred ceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCC
Q psy17795 383 CKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDP 462 (523)
Q Consensus 383 ~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~ 462 (523)
+.++..+.|++++.|++++.| ..++||.+|.||+.++|.+|+|++|++||++|.|++||||.++.||++|.+.+
T Consensus 329 ~l~g~d~iv~~~t~i~~~s~i-k~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~IensIIg~gA~Ig~gs~L~n----- 402 (433)
T KOG1462|consen 329 ALVGADSIVGDNTQIGENSNI-KRSVIGSNCDIGERVKVANSILMDNVVVGDGVNIENSIIGMGAQIGSGSKLKN----- 402 (433)
T ss_pred eccchhhccCCCceeccccee-eeeeecCCccccCCcEEEeeEeecCcEecCCcceecceecccceecCCCeeee-----
Confidence 445667888999999988888 88999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEc
Q psy17795 463 NPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVL 508 (523)
Q Consensus 463 ~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~ 508 (523)
|+||.|=+|.+..+..+.++.
T Consensus 403 -------------------------C~Ig~~yvVeak~~~~~ev~~ 423 (433)
T KOG1462|consen 403 -------------------------CIIGPGYVVEAKGKHGGEVLV 423 (433)
T ss_pred -------------------------eEecCCcEEcccccccccEee
Confidence 777777777777666665544
No 129
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.32 E-value=1.6e-11 Score=98.30 Aligned_cols=67 Identities=34% Similarity=0.560 Sum_probs=59.4
Q ss_pred EECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcC
Q psy17795 390 YIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEG 457 (523)
Q Consensus 390 ~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~ 457 (523)
+|++++.|++++.|.+ ++||++|.|++++.|.+++|+++|.|++++.|.+++|++++.|++++.+.+
T Consensus 1 ~ig~~~~I~~~~~i~~-s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i~~ 67 (79)
T cd03356 1 LIGESTVIGENAIIKN-SVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVIGENVRVVN 67 (79)
T ss_pred CccCCcEECCCCEEeC-CEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCCCEECCCCEEcC
Confidence 3677888888888865 899999999999999999999999999999999999999999999988865
No 130
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.32 E-value=2.1e-11 Score=115.42 Aligned_cols=72 Identities=11% Similarity=0.197 Sum_probs=41.9
Q ss_pred CCCEECCCCEEe-ceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeE
Q psy17795 428 QGASIGNHSLVL-NSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSI 506 (523)
Q Consensus 428 ~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~ 506 (523)
++|.|++++.|. ++.||+++.|+.++.+.+ .+.|+++++++.++.+.++ +.||++|+|++++++.+.
T Consensus 122 ~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~----------~~~ig~~~~ig~~~~v~~~-~~i~~~~~i~~~~~v~~~- 189 (201)
T TIGR03570 122 DNVIINTGAIVEHDCVIGDYVHIAPGVTLSG----------GVVIGEGVFIGAGATIIQG-VTIGAGAIVGAGAVVTKD- 189 (201)
T ss_pred CCcEECCCCEEcCCCEECCCCEECCCCEEeC----------CcEECCCCEECCCCEEeCC-CEECCCCEECCCCEECCc-
Confidence 333333333333 345555555555555543 2455666666666666666 777888888888888554
Q ss_pred EcCCc
Q psy17795 507 VLPYK 511 (523)
Q Consensus 507 v~~~~ 511 (523)
+.++.
T Consensus 190 ~~~~~ 194 (201)
T TIGR03570 190 IPDGG 194 (201)
T ss_pred CCCCC
Confidence 33443
No 131
>KOG1461|consensus
Probab=99.31 E-value=4.8e-12 Score=132.45 Aligned_cols=75 Identities=23% Similarity=0.345 Sum_probs=70.1
Q ss_pred CceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcC
Q psy17795 382 QCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEG 457 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~ 457 (523)
++.++.++.||.++.|+.++.| .|++||+||.||++++|.+|.||+||+||+||.|.+|+|+++|.|+++|.+..
T Consensus 327 ~~~v~~~~~ig~gT~Ig~g~~I-~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~v~i~~~~~l~~ 401 (673)
T KOG1461|consen 327 SVIVGANVVIGAGTKIGSGSKI-SNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDDVKIGEGAILKP 401 (673)
T ss_pred hccccceEEecccccccCCCee-ecceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecCcEeCCCcccCC
Confidence 5677788888888899988888 89999999999999999999999999999999999999999999999999954
No 132
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.31 E-value=2.3e-11 Score=114.49 Aligned_cols=93 Identities=19% Similarity=0.326 Sum_probs=76.7
Q ss_pred CCceEecCcEECCCCEECCCCEECCC---cEECCCCEECCCCEEee-----eEECCCCEECCCCEEeceEECCCCEECCC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPN---VSIDDGAVIGPGVRIKE-----SIILQGASIGNHSLVLNSIVGRNSKVGNW 452 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~---~~Ig~~~~I~~~~~I~~-----s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~ 452 (523)
+++.+.+++.||+++.|+++++|.++ ++|+++|.|+++|+|+. ++|++++.||+++.|.+++||++|.||.+
T Consensus 21 ~~a~I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g~vIG~~v~IG~g 100 (196)
T PRK13627 21 PSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRDALVGMN 100 (196)
T ss_pred CCCEEECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEeeEEECCCCEECcC
Confidence 57777888889999999999988653 68899999999999854 79999999999999999999999999999
Q ss_pred cEEcCCCCCCCCCCCceecCCCCeecCCCee
Q psy17795 453 SRVEGTPCDPNPNKAFAKMDNPPLFNSNGKL 483 (523)
Q Consensus 453 ~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i 483 (523)
+++.+ .++|++++.+++++.|
T Consensus 101 a~V~~----------g~~IG~~s~Vgags~V 121 (196)
T PRK13627 101 SVIMD----------GAVIGEESIVAAMSFV 121 (196)
T ss_pred CccCC----------CcEECCCCEEcCCCEE
Confidence 99965 2556666666555533
No 133
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.31 E-value=1.9e-11 Score=131.51 Aligned_cols=61 Identities=21% Similarity=0.284 Sum_probs=45.4
Q ss_pred ceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeC
Q psy17795 440 NSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLN 504 (523)
Q Consensus 440 ~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~ 504 (523)
+++||++|.||+++.+.+.. ......+.||++++||.++.+.++ +.||++++|++++++..
T Consensus 374 ~~~ig~~~~ig~~~~i~~~~---~~~~~~~~Ig~~~~ig~~~~i~~~-~~Ig~~~~i~~gs~v~~ 434 (481)
T PRK14358 374 DVTIGAETNVGAGTIVANFD---GVNKHQSKVGAGVFIGSNTTLIAP-RVVGDAAFIAAGSAVHD 434 (481)
T ss_pred CeEEcCCceEcCCEEEeCCC---CccCCCCEECCCeEEcCCCEEcCC-cEECCCCEECCCCEEec
Confidence 45566666666666665421 112345789999999999999999 67899999999999843
No 134
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=99.30 E-value=8e-11 Score=113.14 Aligned_cols=204 Identities=14% Similarity=0.149 Sum_probs=123.0
Q ss_pred eEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEEE
Q psy17795 95 TTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRYL 174 (523)
Q Consensus 95 ~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~ 174 (523)
.+|||||| .|+||++ ..||+|++++|+|||+|+++++.+...+++|+|++++........+... .....+.++
T Consensus 2 ~~vILAaG--~s~R~~~---~~~K~l~~i~Gkpll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~--~~~~~~~~~ 74 (218)
T cd02516 2 AAIILAAG--SGSRMGA---DIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELAKY--GLSKVVKIV 74 (218)
T ss_pred EEEEECCc--ccccCCC---CCCcceeEECCeEHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHHHhc--ccCCCeEEE
Confidence 38999999 9999986 4799999999999999999999986348999999987554444433211 112234344
Q ss_pred ecccccchhhhhcccccccccCCCchhHHH--Hhhcc-cCCcceEEEEc-----cchHH---HHHHHHhcCCcceEEEEE
Q psy17795 175 QEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLH-WVQEAVYFTLE-----IRSDV---VILMHSLYSMAILVTVMA 243 (523)
Q Consensus 175 ~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~-~~~d~~~Lvl~-----i~~D~---l~~~h~~~~~~~~~tv~~ 243 (523)
.+.. + ..++++ .+++. ...+. +|++. +-.+. +++.+...+ ..+..
T Consensus 75 ~~~~--~-----------------~~~si~~al~~~~~~~~~~-vlv~~~D~P~i~~~~i~~li~~~~~~~----~~~~~ 130 (218)
T cd02516 75 EGGA--T-----------------RQDSVLNGLKALPDADPDI-VLIHDAARPFVSPELIDRLIDALKEYG----AAIPA 130 (218)
T ss_pred CCch--H-----------------HHHHHHHHHHhcccCCCCE-EEEccCcCCCCCHHHHHHHHHHHhhCC----cEEEE
Confidence 3321 2 345666 55553 22344 66654 11222 555554332 23333
Q ss_pred EeeCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCCCCccc
Q psy17795 244 TEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNH 323 (523)
Q Consensus 244 ~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~ 323 (523)
.+.. .+....|++ |.+.++.+. .....+.++ ++|+.+.+..+....... ++|+
T Consensus 131 ~~~~------~~~~~~~~~-g~~~~~~~r---~~~~~~~~P-~~f~~~~~~~~~~~~~~~--~~~~-------------- 183 (218)
T cd02516 131 VPVT------DTIKRVDDD-GVVVETLDR---EKLWAAQTP-QAFRLDLLLKAHRQASEE--GEEF-------------- 183 (218)
T ss_pred Eecc------ccEEEecCC-CceeecCCh---HHhhhhcCC-CcccHHHHHHHHHHHHhc--CCCc--------------
Confidence 3331 112234555 888888764 234566777 899998877665432221 4443
Q ss_pred ccchhhhhhhhhcCC-cEEEEEcchhHhhhccchhhhh
Q psy17795 324 IQLEKEIIMPLAGSG-KAYVYQTSKWWSQLKSAGSAIY 360 (523)
Q Consensus 324 ~~~~~dil~~li~~g-~v~~~~~~g~w~dIgt~~dyl~ 360 (523)
+|....+.+.+ ++..+..+..-.+|+|++|+..
T Consensus 184 ----td~~~~~~~~~~~v~~v~~~~~~~~i~t~~dl~~ 217 (218)
T cd02516 184 ----TDDASLVEAAGGKVALVEGSEDNIKITTPEDLAL 217 (218)
T ss_pred ----CcHHHHHHHcCCCeEEEecCcccccCCCHHHHhh
Confidence 34444444444 4666665554459999999743
No 135
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.29 E-value=3.4e-11 Score=110.28 Aligned_cols=70 Identities=17% Similarity=0.282 Sum_probs=47.4
Q ss_pred CcEECCCCEECCCCEECCC---cEECCCCEECCCCEEee-------------eEECCCCEECCCCEEeceEECCCCEECC
Q psy17795 388 DVYIHSSASVHPTAIVGPN---VSIDDGAVIGPGVRIKE-------------SIILQGASIGNHSLVLNSIVGRNSKVGN 451 (523)
Q Consensus 388 ~~~i~~~~~I~~~~~I~~~---~~Ig~~~~I~~~~~I~~-------------s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~ 451 (523)
++.+++++.|++++.|.++ ++||++|.|+++|.|.. ++||+++.|++++.+.++.|++++.||+
T Consensus 21 ~I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~Ig~~v~Ig~ 100 (161)
T cd03359 21 NIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQIGSYVHIGK 100 (161)
T ss_pred CEEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEeeEEcCCcEECC
Confidence 5666666777777666543 57777777777777753 3577777777777777777777777766
Q ss_pred CcEEcC
Q psy17795 452 WSRVEG 457 (523)
Q Consensus 452 ~~~i~~ 457 (523)
++.|+.
T Consensus 101 ~~~Ig~ 106 (161)
T cd03359 101 NCVIGR 106 (161)
T ss_pred CCEEcC
Confidence 666643
No 136
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.29 E-value=1.7e-11 Score=130.98 Aligned_cols=94 Identities=20% Similarity=0.257 Sum_probs=58.6
Q ss_pred cEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCC
Q psy17795 407 VSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPS 486 (523)
Q Consensus 407 ~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g 486 (523)
+.||++|.|++++.|.+++|++++.|++++.+.+++||++|.||+++.+.+.. ......+.||++++||.++.|.++
T Consensus 332 ~~Ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~~~~~~i~~~~~iG~~~~~~~~~---~~~~~~~~Ig~~~~iG~~~~i~~~ 408 (450)
T PRK14360 332 AQIGSNCRIGNFVEIKKSQLGEGSKVNHLSYIGDATLGEQVNIGAGTITANYD---GVKKHRTVIGDRSKTGANSVLVAP 408 (450)
T ss_pred CEEeCceEECCCEEEeccccCCCcEeccceecCCceecCCcEECccceecccc---ccccCCcEeCCCeEeCCCCEEeCC
Confidence 33333333333333333444444444444444455566666666666654311 112346899999999999999999
Q ss_pred cEEeCCCCEECCCcEEeC
Q psy17795 487 ITILGDGVTVPGELIVLN 504 (523)
Q Consensus 487 ~~iIG~~~~Ig~~~~i~~ 504 (523)
+.||++++|+++++|.+
T Consensus 409 -~~ig~~~~v~~~~~v~~ 425 (450)
T PRK14360 409 -ITLGEDVTVAAGSTITK 425 (450)
T ss_pred -cEECCCCEECCCCEECc
Confidence 77899999999999954
No 137
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.28 E-value=2.9e-11 Score=97.46 Aligned_cols=79 Identities=18% Similarity=0.299 Sum_probs=71.7
Q ss_pred ECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcE
Q psy17795 409 IDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSIT 488 (523)
Q Consensus 409 Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~ 488 (523)
||+++.|++++.|.++.|+++|.|++++.|.+++|++++.|++++.|.+ +
T Consensus 2 ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~------------------------------s 51 (81)
T cd04652 2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLEN------------------------------C 51 (81)
T ss_pred ccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCCCEECCCCEEec------------------------------c
Confidence 6888888888888889999999999999999999999999999999976 7
Q ss_pred EeCCCCEECCCcEEeCeEEcCCcEeCCCC
Q psy17795 489 ILGDGVTVPGELIVLNSIVLPYKELTRSF 517 (523)
Q Consensus 489 iIG~~~~Ig~~~~i~~~~v~~~~~i~~~~ 517 (523)
+|++++.|++++.+.+++++++..|..+.
T Consensus 52 vi~~~~~i~~~~~v~~~ii~~~~~i~~~~ 80 (81)
T cd04652 52 IIGNGAVIGEKCKLKDCLVGSGYRVEAGT 80 (81)
T ss_pred EEeCCCEECCCCEEccCEECCCcEeCCCC
Confidence 88999999999999999999999988764
No 138
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.28 E-value=3.5e-11 Score=129.69 Aligned_cols=76 Identities=17% Similarity=0.202 Sum_probs=54.8
Q ss_pred eEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEe
Q psy17795 424 SIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVL 503 (523)
Q Consensus 424 s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~ 503 (523)
++|++++.|++.+.+.+++||++|.||+++.+.+.. ......+.||++++||.++.|.++ +.||++++||+|++|.
T Consensus 358 ~~I~~~~~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~---~~~~~~~~IGd~~~iG~~~~i~~~-~~Ig~~~~igags~v~ 433 (482)
T PRK14352 358 ATIGRGTKVPHLTYVGDADIGEHSNIGASSVFVNYD---GVNKHRTTIGSHVRTGSDTMFVAP-VTVGDGAYTGAGTVIR 433 (482)
T ss_pred cEECCCcEEccCceecccEECCCcEECCCcEEeccc---cccCCCCeECCCcEECCCCEEeCC-CEECCCcEECCCCEEc
Confidence 344444555444455566777777777777765421 112346889999999999999999 6779999999999994
No 139
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=99.26 E-value=7.8e-11 Score=103.68 Aligned_cols=39 Identities=23% Similarity=0.301 Sum_probs=31.0
Q ss_pred CceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-eCeEEc
Q psy17795 467 AFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV-LNSIVL 508 (523)
Q Consensus 467 ~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-~~~~v~ 508 (523)
..+.||++++||.++.| + +.||++|+||+|++| .+..|.
T Consensus 72 ~pV~IG~~~~IG~ga~I--g-v~IG~~~vIGaGsvV~k~t~i~ 111 (147)
T cd04649 72 NVISIGKRCLLGANSGI--G-ISLGDNCIVEAGLYVTAGTKVT 111 (147)
T ss_pred cCEEECCCCEECCCCEE--e-EEECCCCEECCCCEEeCCeEEE
Confidence 34888888999989888 5 778999999999988 454443
No 140
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.26 E-value=3.5e-11 Score=128.58 Aligned_cols=94 Identities=20% Similarity=0.376 Sum_probs=57.5
Q ss_pred CCCCEECCCCEEee-eEECCCCEECCCCEEeceEECCCC-----------EECCCcEEcCCCCCC---CCCCCceecCCC
Q psy17795 410 DDGAVIGPGVRIKE-SIILQGASIGNHSLVLNSIVGRNS-----------KVGNWSRVEGTPCDP---NPNKAFAKMDNP 474 (523)
Q Consensus 410 g~~~~I~~~~~I~~-s~Ig~~~~Ig~~~~I~~~iIg~~~-----------~Ig~~~~i~~~~~~~---~~~~~~v~I~~~ 474 (523)
+++|.|++++.|+. ++||++|.||+++.+.+++||+++ .||++|.|+...... ......++|+++
T Consensus 310 ~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~ig~~~~~~~~~~~~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~ 389 (448)
T PRK14357 310 EDDVSVGPFSRLREGTVLKKSVKIGNFVEIKKSTIGENTKAQHLTYLGDATVGKNVNIGAGTITCNYDGKKKNPTFIEDG 389 (448)
T ss_pred eCCcEECCCcEECCcccccCCcEecCceeeeccEEcCCcCccccccccCcEECCCcEECCCcccccccccccCCcEECCC
Confidence 33344444444532 566666666666555444444332 334444443322111 112245899999
Q ss_pred CeecCCCeecCCcEEeCCCCEECCCcEEeC
Q psy17795 475 PLFNSNGKLNPSITILGDGVTVPGELIVLN 504 (523)
Q Consensus 475 ~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~ 504 (523)
++||.++.|.+| +.||+++.||+|++|..
T Consensus 390 ~~ig~~~~i~~g-v~Ig~~~~i~ag~~v~~ 418 (448)
T PRK14357 390 AFIGSNSSLVAP-VRIGKGALIGAGSVITE 418 (448)
T ss_pred CEECCCCEEeCC-cEECCCCEEcCCCEECC
Confidence 999999999999 67799999999999943
No 141
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.25 E-value=9.3e-11 Score=110.01 Aligned_cols=53 Identities=9% Similarity=0.234 Sum_probs=32.1
Q ss_pred eEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeC
Q psy17795 441 SIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLN 504 (523)
Q Consensus 441 ~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~ 504 (523)
+.||++|.|+.++.+.+ .+.|+++++||.++.+.++ ++||+++.|+++++|..
T Consensus 133 ~~ig~~~~i~~~~~i~~----------~~~ig~~~~ig~~~~v~~~-~~ig~~~~v~~~~~v~~ 185 (197)
T cd03360 133 CVIGDFVHIAPGVVLSG----------GVTIGEGAFIGAGATIIQG-VTIGAGAIIGAGAVVTK 185 (197)
T ss_pred CEECCCCEECCCCEEcC----------CcEECCCCEECCCCEEcCC-CEECCCCEECCCCEEcC
Confidence 34445555555555533 2445555566666666666 66788888888888744
No 142
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.25 E-value=9.7e-11 Score=114.77 Aligned_cols=102 Identities=14% Similarity=0.169 Sum_probs=70.4
Q ss_pred CCceEecCcEECCCCEECCCCEEC-----CCcEECCCCEECCCCEEee-eEECCCCEECCCCEEe---------ceEECC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVG-----PNVSIDDGAVIGPGVRIKE-SIILQGASIGNHSLVL---------NSIVGR 445 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~-----~~~~Ig~~~~I~~~~~I~~-s~Ig~~~~Ig~~~~I~---------~~iIg~ 445 (523)
+++.+.++++|++++.|++++.|. .+++||++|.|+.++.|++ +.||++|.|+.++.|. .++|++
T Consensus 102 ~~~rI~p~a~V~~ga~Ig~gavI~p~~V~iGa~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIgD 181 (272)
T PRK11830 102 AGVRVVPGAVVRRGAYIAPNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIED 181 (272)
T ss_pred CCcEEcCCeEECCCCEECCCcEEEEEEECCCCEECCCcEEccccEECCCCEECCCcEECCCccCCCCccccCcCCeEEcC
Confidence 456677777777777777777765 3455666666666666654 5677777777777664 378888
Q ss_pred CCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCC
Q psy17795 446 NSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDG 493 (523)
Q Consensus 446 ~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~ 493 (523)
+|.||.+|.|.. .+.||+++.|+.++.|.++ +.|++.
T Consensus 182 nv~IGa~s~I~~----------Gv~IGdgavIgag~vV~~g-t~I~~~ 218 (272)
T PRK11830 182 NCFIGARSEVVE----------GVIVEEGSVLGMGVFLGQS-TKIYDR 218 (272)
T ss_pred CCEECCCCEEcC----------CCEECCCCEEcCCCEEcCC-eEECcC
Confidence 888888888854 3677777777777766666 555654
No 143
>PRK10502 putative acyl transferase; Provisional
Probab=99.25 E-value=6.3e-11 Score=110.71 Aligned_cols=100 Identities=19% Similarity=0.219 Sum_probs=60.2
Q ss_pred EECCCCEECCCCEEC--CCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCC-----
Q psy17795 390 YIHSSASVHPTAIVG--PNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDP----- 462 (523)
Q Consensus 390 ~i~~~~~I~~~~~I~--~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~----- 462 (523)
.||+++.|++++.|. .++.||++|.|++++.|.+ .+ .++||++|.|++++.|....+..
T Consensus 53 ~iG~~~~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~~---~~-----------~v~IG~~~~I~~~~~I~~~~h~~~~~~~ 118 (182)
T PRK10502 53 KIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLYN---LG-----------EITIGAHCVISQKSYLCTGSHDYSDPHF 118 (182)
T ss_pred ccCCCcEEcCCEEEecCCeEEECCCeEECCCceecc---cC-----------ceEECCCcEECCCeEEECCCCCCcCCCc
Confidence 344444444444442 2466666666666666642 01 23344444444444443222211
Q ss_pred CCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeC
Q psy17795 463 NPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLN 504 (523)
Q Consensus 463 ~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~ 504 (523)
......+.||++++||++++|.+| +.||++|+|++++++..
T Consensus 119 ~~~~~~i~Igd~~~Ig~~a~I~~G-v~Ig~~~vIga~svV~~ 159 (182)
T PRK10502 119 DLNTAPIVIGEGCWLAADVFVAPG-VTIGSGAVVGARSSVFK 159 (182)
T ss_pred ccccCCEEEcCCcEEcCCCEEcCC-CEECCCCEECCCCEEec
Confidence 112256889999999999999999 67799999999999843
No 144
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.24 E-value=6.4e-11 Score=114.53 Aligned_cols=113 Identities=14% Similarity=0.229 Sum_probs=88.9
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEe-eeEECCCCEECCCCEEec---------eEECCCCEEC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVLN---------SIVGRNSKVG 450 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~s~Ig~~~~Ig~~~~I~~---------~iIg~~~~Ig 450 (523)
+++.+.+++.|++++.|++++.|+++++||++|.|++++.|+ +++||++|.||.++.|.+ ++||++|.||
T Consensus 91 ~~a~I~g~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v~IG 170 (231)
T TIGR03532 91 PGAIIRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLIG 170 (231)
T ss_pred CCCEEeCCeEECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCCcEEC
Confidence 467888999999999999999999999999999999999995 799999999999999974 8899999999
Q ss_pred CCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCCcEeCC
Q psy17795 451 NWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKELTR 515 (523)
Q Consensus 451 ~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i~~ 515 (523)
.++.|.. .++|+++++|+++++|.. .|++++++.+. |.+.|.+
T Consensus 171 ~gsvI~~----------g~~Ig~~~~IgagsvV~~---------di~~~~vv~G~---PA~~i~~ 213 (231)
T TIGR03532 171 ANAVILE----------GVRVGKGAVVAAGAIVTE---------DVPPNTVVAGV---PAKVIKQ 213 (231)
T ss_pred CCCEEcC----------CCEECCCCEECCCCEEcc---------ccCCCcEEEec---CCEEecc
Confidence 9988864 256666666666654332 15566665432 4555544
No 145
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.23 E-value=7.9e-11 Score=126.20 Aligned_cols=111 Identities=21% Similarity=0.291 Sum_probs=69.1
Q ss_pred ECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCCCCCCCcee
Q psy17795 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPNKAFAK 470 (523)
Q Consensus 391 i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~ 470 (523)
|++++.|++++.|++++.||++|.|++++.|.+++|++++.+++.+.+.+++||++|.||.++.+.+.. ......+.
T Consensus 319 ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~~~~~i~~~~~~~~~~ig~~~~ig~~~~~~~~~---~~~~~~~~ 395 (458)
T PRK14354 319 VGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEGTKVSHLTYIGDAEVGENVNIGCGTITVNYD---GKNKFKTI 395 (458)
T ss_pred ECCCcEECCceEecCCCEEeCCcEECCceEEeeeEECCCCEecceeeecCcccCCceEEcCceeecccc---cccccCCE
Confidence 333444444444444444444444444444444555555555555555556666666666666554321 11223588
Q ss_pred cCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCe
Q psy17795 471 MDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNS 505 (523)
Q Consensus 471 I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~ 505 (523)
|++++++|.++.+.++ +.||+++.||++++|...
T Consensus 396 igd~~~ig~~s~i~~~-~~ig~~~~v~~~~~v~~~ 429 (458)
T PRK14354 396 IGDNAFIGCNSNLVAP-VTVGDNAYIAAGSTITKD 429 (458)
T ss_pred ECCCcEEccCCEEeCC-cEECCCCEECCCCEECCC
Confidence 9999999999999999 778999999999999543
No 146
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.23 E-value=7.6e-11 Score=94.24 Aligned_cols=66 Identities=23% Similarity=0.301 Sum_probs=52.0
Q ss_pred ECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcC
Q psy17795 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEG 457 (523)
Q Consensus 391 i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~ 457 (523)
|++++.|++++.|. ++.|+++|.|++++.|.+++|++++.|+++++|.+++|++++.|++++.+..
T Consensus 2 ig~~~~I~~~~~i~-~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~ 67 (79)
T cd05787 2 IGRGTSIGEGTTIK-NSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADGAVIGKGCTIPP 67 (79)
T ss_pred ccCCCEECCCCEEe-ccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCCCEECCCCEECC
Confidence 56777777777774 6788888888888888888888888888888888888888888887777754
No 147
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.22 E-value=2e-10 Score=96.48 Aligned_cols=86 Identities=24% Similarity=0.274 Sum_probs=72.8
Q ss_pred cCcEECCCCEECCCCEECCCcEECCCCEECCCCEEee-eEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCCCCC
Q psy17795 387 GDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE-SIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPN 465 (523)
Q Consensus 387 ~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~-s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~~~ 465 (523)
+++++++++.|++++.|.++++||++|.|++++.|.. ++||++|.||. .|.+++|++++.|++++.|++
T Consensus 10 g~v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg~-------- 79 (101)
T cd05635 10 GPIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLGH-------- 79 (101)
T ss_pred CCEEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEee--------
Confidence 5688899999999998988899999999999998864 88888888865 578888988888888888865
Q ss_pred CCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeC
Q psy17795 466 KAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLN 504 (523)
Q Consensus 466 ~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~ 504 (523)
++||+++.||+++...|
T Consensus 80 ----------------------siIg~~v~ig~~~~~~~ 96 (101)
T cd05635 80 ----------------------SYLGSWCNLGAGTNNSD 96 (101)
T ss_pred ----------------------eEECCCCEECCCceecc
Confidence 78899999999887754
No 148
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.20 E-value=1.2e-10 Score=93.16 Aligned_cols=77 Identities=29% Similarity=0.383 Sum_probs=61.5
Q ss_pred EECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCc
Q psy17795 408 SIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSI 487 (523)
Q Consensus 408 ~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~ 487 (523)
+||++|.|++++.|.+++||++|.|++++.|.+++|++++.|++++.+.+
T Consensus 1 ~ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~------------------------------ 50 (79)
T cd03356 1 LIGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVD------------------------------ 50 (79)
T ss_pred CccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCCCEECCCCEEEC------------------------------
Confidence 47888888888888889999999999999999999999999999999976
Q ss_pred EEeCCCCEECCCcEEeC-eEEcCCcEeC
Q psy17795 488 TILGDGVTVPGELIVLN-SIVLPYKELT 514 (523)
Q Consensus 488 ~iIG~~~~Ig~~~~i~~-~~v~~~~~i~ 514 (523)
++|++++.|++++.+.+ +++++++.|.
T Consensus 51 svv~~~~~i~~~~~i~~~~~ig~~~~i~ 78 (79)
T cd03356 51 SIIGDNAVIGENVRVVNLCIIGDDVVVE 78 (79)
T ss_pred CEECCCCEECCCCEEcCCeEECCCeEEC
Confidence 45566666666666644 5666655543
No 149
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.19 E-value=1.5e-10 Score=97.97 Aligned_cols=50 Identities=24% Similarity=0.525 Sum_probs=25.0
Q ss_pred CcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEc
Q psy17795 406 NVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVE 456 (523)
Q Consensus 406 ~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~ 456 (523)
+++||++|.|+ ++.|.+|+|+++|.|+++|.|.+++|++++.||+++.+.
T Consensus 12 ~s~Ig~~~~I~-~~~I~~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~ 61 (104)
T cd04651 12 NSLVSEGCIIS-GGTVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIR 61 (104)
T ss_pred eEEECCCCEEc-CeEEEeCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEE
Confidence 34444455554 444445555555555555555555555555555555443
No 150
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.18 E-value=1.7e-10 Score=92.24 Aligned_cols=50 Identities=26% Similarity=0.410 Sum_probs=45.5
Q ss_pred EECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcC
Q psy17795 408 SIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEG 457 (523)
Q Consensus 408 ~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~ 457 (523)
+||++|.|++++.|.+++|+++|.|++++.|.+++|++++.|++++.|.+
T Consensus 1 ~ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~ 50 (79)
T cd05787 1 VIGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHH 50 (79)
T ss_pred CccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeC
Confidence 36888888888888889999999999999999999999999999999975
No 151
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=99.18 E-value=1.6e-10 Score=113.13 Aligned_cols=112 Identities=22% Similarity=0.249 Sum_probs=60.9
Q ss_pred EecCcEECCCCEECCCCEECCCcEECCCCEECCCCE-EeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCCC
Q psy17795 385 TIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVR-IKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPN 463 (523)
Q Consensus 385 i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~-I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~ 463 (523)
+..++.|++++.|.+++.|+++++|.++++|+.++. ++++.|... |.. +++||++|.||.+|.|.+...+
T Consensus 175 vp~gVrI~~sa~Vr~gA~LGeGT~IM~~a~Vn~nAgtiG~~~IEgr--Ins-----GavIGhds~IG~gasIg~tLsG-- 245 (341)
T TIGR03536 175 VPKGVRIADTARVRLGAYVGEGTTVMHEGFINFNAGTEGPSMVEGR--ISA-----GVMVGKGSDLGGGCSTMGTLSG-- 245 (341)
T ss_pred ccCCcEEcCCCeEcCCcEECCCCEEecCCEECcCcEecCCceEecc--ccc-----CCEECCCCEECCCCEEeEEEeC--
Confidence 344555555555555555555555555555555554 332111110 111 2333333333333333211000
Q ss_pred CCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-eCeEEc
Q psy17795 464 PNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV-LNSIVL 508 (523)
Q Consensus 464 ~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-~~~~v~ 508 (523)
.....+.||++|+||+++.| | ..||++|+||+|++| .++.|.
T Consensus 246 g~~~~V~IGe~~lIGagA~I--G-I~IGd~~iIGAGavVtagTkI~ 288 (341)
T TIGR03536 246 GGNIVISVGEGCLLGANAGI--G-IPLGDRCTVEAGLYITAGTKVA 288 (341)
T ss_pred CCceeEEECCCcEECCCCEE--e-eEECCCCEECCCCEEeCCcEEE
Confidence 01123788999999999988 6 667999999999988 665554
No 152
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.18 E-value=3.4e-10 Score=106.20 Aligned_cols=94 Identities=13% Similarity=0.221 Sum_probs=65.4
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEe-eeEECCCCEECCCCEEe-ceEECCCCEECCCcEEcCC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVL-NSIVGRNSKVGNWSRVEGT 458 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i~~~ 458 (523)
+.+.+.+++.+++++.|++++.|++++.||++|.|++++.|+ ++.||++|.|+.++.|. +++||++|.||.++.+.+
T Consensus 89 ~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~- 167 (197)
T cd03360 89 PSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATIIQ- 167 (197)
T ss_pred CCeEECCCCEECCCCEEcCCCEECCCCEECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEECCCCEEcC-
Confidence 345666677777777777777777777777777777777774 36777777777777775 577777777777777754
Q ss_pred CCCCCCCCCceecCCCCeecCCCeec
Q psy17795 459 PCDPNPNKAFAKMDNPPLFNSNGKLN 484 (523)
Q Consensus 459 ~~~~~~~~~~v~I~~~~~ig~~~~i~ 484 (523)
.++|++++.++++++|.
T Consensus 168 ---------~~~ig~~~~v~~~~~v~ 184 (197)
T cd03360 168 ---------GVTIGAGAIIGAGAVVT 184 (197)
T ss_pred ---------CCEECCCCEECCCCEEc
Confidence 25566666666665443
No 153
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=99.18 E-value=2.6e-10 Score=104.10 Aligned_cols=90 Identities=20% Similarity=0.336 Sum_probs=68.9
Q ss_pred EEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEEEe
Q psy17795 96 TNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRYLQ 175 (523)
Q Consensus 96 ~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~ 175 (523)
+|||||| +|+||+. ||+|++++|+|||+|+++.+.+. ++++|+|++++ +++.+++.. ++++ ++.
T Consensus 1 ~vILa~G--~s~Rmg~-----~K~l~~i~g~~li~~~l~~l~~~-~~~~Ivvv~~~--~~~~~~~~~----~~~~--~v~ 64 (160)
T PF12804_consen 1 AVILAAG--KSSRMGG-----PKALLPIGGKPLIERVLEALREA-GVDDIVVVTGE--EEIYEYLER----YGIK--VVV 64 (160)
T ss_dssp EEEEESS--SCGGGTS-----CGGGSEETTEEHHHHHHHHHHHH-TESEEEEEEST--HHHHHHHTT----TTSE--EEE
T ss_pred CEEECCc--CcccCCC-----CccceeECCccHHHHHHHHhhcc-CCceEEEecCh--HHHHHHHhc----cCce--EEE
Confidence 6999999 9999975 99999999999999999999996 89999999987 456666644 3444 444
Q ss_pred cc-cccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc
Q psy17795 176 EF-WDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE 220 (523)
Q Consensus 176 ~~-~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~ 220 (523)
+. ...| .+.+++ ...+. ..++ |++++
T Consensus 65 ~~~~~~G-----------------~~~sl~~a~~~~~-~~~~-vlv~~ 93 (160)
T PF12804_consen 65 DPEPGQG-----------------PLASLLAALSQLP-SSEP-VLVLP 93 (160)
T ss_dssp -STSSCS-----------------HHHHHHHHHHTST-TSSE-EEEEE
T ss_pred eccccCC-----------------hHHHHHHHHHhcc-cCCC-cEEEe
Confidence 32 2244 888888 55552 2456 88887
No 154
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.16 E-value=4.5e-10 Score=106.20 Aligned_cols=92 Identities=13% Similarity=0.225 Sum_probs=68.5
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEe-eeEECCCCEECCCCEEe-ceEECCCCEECCCcEEcCC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVL-NSIVGRNSKVGNWSRVEGT 458 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i~~~ 458 (523)
+.+.+.+++.|++++.|+++++|+++++||++|.|++++.|+ ++.||+++.|+.++.|. ++.|+++|.||.++.+..
T Consensus 92 ~~a~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~- 170 (201)
T TIGR03570 92 PSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFIGAGATIIQ- 170 (201)
T ss_pred CCeEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCCCEECCCCEEeCCcEECCCCEECCCCEEeC-
Confidence 356677777788888888888887788888888888888885 47788888888888777 688888888888877754
Q ss_pred CCCCCCCCCceecCCCCeecCCCe
Q psy17795 459 PCDPNPNKAFAKMDNPPLFNSNGK 482 (523)
Q Consensus 459 ~~~~~~~~~~v~I~~~~~ig~~~~ 482 (523)
.+.|++++.++++++
T Consensus 171 ---------~~~i~~~~~i~~~~~ 185 (201)
T TIGR03570 171 ---------GVTIGAGAIVGAGAV 185 (201)
T ss_pred ---------CCEECCCCEECCCCE
Confidence 255666666665553
No 155
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=99.16 E-value=2.3e-09 Score=105.09 Aligned_cols=67 Identities=19% Similarity=0.298 Sum_probs=54.9
Q ss_pred cccceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCC-hHHHHHHHH
Q psy17795 90 VSCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYP-SADLQKFVL 161 (523)
Q Consensus 90 ~~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~-~~~i~~~l~ 161 (523)
.++.+.+|||||| .|+||+. ..||+|++++|+|+|+|+++.+.+.+++++|+||+++. .+.+++.+.
T Consensus 21 ~~~~i~aIILAAG--~gsRmg~---~~pKqll~l~Gkpll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~ 88 (252)
T PLN02728 21 KEKSVSVILLAGG--VGKRMGA---NMPKQYLPLLGQPIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVE 88 (252)
T ss_pred ccCceEEEEEccc--ccccCCC---CCCcceeEECCeEHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHH
Confidence 3345679999999 9999975 68999999999999999999999866899999999874 334444443
No 156
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=99.15 E-value=3.9e-10 Score=105.38 Aligned_cols=62 Identities=24% Similarity=0.359 Sum_probs=56.5
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHh
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLD 162 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~ 162 (523)
|.+|||||| +|+||++ .||+|++++|+|||+|+++++.+. ++++|+++++++.+.++.++.+
T Consensus 1 m~aIILAgG--~gsRmg~----~~K~Ll~i~GkplI~~vi~~l~~~-~i~~I~Vv~~~~~~~~~~~l~~ 62 (183)
T TIGR00454 1 MDALIMAGG--KGTRLGG----VEKPLIEVCGRCLIDHVLSPLLKS-KVNNIIIATSPHTPKTEEYINS 62 (183)
T ss_pred CeEEEECCc--cCccCCC----CCceEeEECCEEHHHHHHHHHHhC-CCCEEEEEeCCCHHHHHHHHhh
Confidence 679999999 9999975 699999999999999999999985 8999999999888888888875
No 157
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=99.15 E-value=4.9e-10 Score=105.61 Aligned_cols=95 Identities=11% Similarity=0.158 Sum_probs=64.5
Q ss_pred eEECCCCEECCCCEEe---ceEECCCCEECCCcEEcCCCCCC-----------------CCCCCceecCCCCeecCCCee
Q psy17795 424 SIILQGASIGNHSLVL---NSIVGRNSKVGNWSRVEGTPCDP-----------------NPNKAFAKMDNPPLFNSNGKL 483 (523)
Q Consensus 424 s~Ig~~~~Ig~~~~I~---~~iIg~~~~Ig~~~~i~~~~~~~-----------------~~~~~~v~I~~~~~ig~~~~i 483 (523)
..||++|.|++++.|. ++.||++|.|++++.|.+..++. ......+.|+++++||.++.|
T Consensus 66 i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~ig~~~~i 145 (192)
T PRK09677 66 LFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPPDMRTLESSAVVIGQRVWIGENVTI 145 (192)
T ss_pred EEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccChhhcccccCCeEEcCCcEECCCCEE
Confidence 4566666666666664 56677777777777665432210 112356889999999999999
Q ss_pred cCCcEEeCCCCEECCCcEEeCeEEcCCcEeCCCCCCcc
Q psy17795 484 NPSITILGDGVTVPGELIVLNSIVLPYKELTRSFKNEI 521 (523)
Q Consensus 484 ~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i~~~~~~~~ 521 (523)
.++ ++||++|+|+++++|... +.++..+ .+.|+..
T Consensus 146 ~~g-~~Ig~~~~Iga~s~v~~~-i~~~~~~-~G~Pa~~ 180 (192)
T PRK09677 146 LPG-VSIGNGCIVGANSVVTKS-IPENTVI-AGNPAKI 180 (192)
T ss_pred cCC-CEECCCCEECCCCEECcc-cCCCcEE-EecCCEE
Confidence 999 788999999999999654 4444444 3445443
No 158
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=99.14 E-value=1.5e-09 Score=105.36 Aligned_cols=207 Identities=13% Similarity=0.177 Sum_probs=117.4
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCCh-HHHHHHHHhhhhccCe---
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPS-ADLQKFVLDMVQEYKI--- 169 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~-~~i~~~l~~~~~~~~~--- 169 (523)
+.+|||||| .|+||+. ..||+|++++|+|||.|+++++...+.+++|+|+++... ..+.+++.+ ++.
T Consensus 3 ~~~iIlAaG--~g~R~g~---~~~K~l~~l~gkpll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~----~~~~~~ 73 (230)
T PRK13385 3 YELIFLAAG--QGKRMNA---PLNKMWLDLVGEPIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMKQ----LNVADQ 73 (230)
T ss_pred eEEEEECCe--eccccCC---CCCcceeEECCeEHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHHHh----cCcCCC
Confidence 468999999 9999975 679999999999999999999987656999999987633 334444443 221
Q ss_pred eEEEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc-----cchHH---HHHHHHhcCCcceE
Q psy17795 170 NIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE-----IRSDV---VILMHSLYSMAILV 239 (523)
Q Consensus 170 ~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~-----i~~D~---l~~~h~~~~~~~~~ 239 (523)
.++++.... + ..++++ .+.+.. .+. ++++. +-.+. +++.+.+.+ +
T Consensus 74 ~~~~v~~g~--~-----------------r~~sv~~gl~~~~~-~d~-vli~~~d~P~i~~~~i~~li~~~~~~~--~-- 128 (230)
T PRK13385 74 RVEVVKGGT--E-----------------RQESVAAGLDRIGN-EDV-ILVHDGARPFLTQDIIDRLLEGVAKYG--A-- 128 (230)
T ss_pred ceEEcCCCc--h-----------------HHHHHHHHHHhccC-CCe-EEEccCCCCCCCHHHHHHHHHHHhhCC--c--
Confidence 233332211 1 235666 445542 233 56654 22333 555554433 2
Q ss_pred EEEEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCCcccceeeeeEEEeeHHHHHHHHHhhcccccccccccccccCCCC
Q psy17795 240 TVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDT 319 (523)
Q Consensus 240 tv~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~~~~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~~~~~~~~~ 319 (523)
.+.+.++. ..+....+ +.+....++. .-+.--+.+.|+.+.+...-+... .++++.
T Consensus 129 ~~~~~~~~-------dti~~~~~-~~~~~~i~r~----~~~~~qtpq~f~~~~l~~~~~~~~--~~~~~~---------- 184 (230)
T PRK13385 129 AICAVEVK-------DTVKRVKD-KQVIETVDRN----ELWQGQTPQAFELKILQKAHRLAS--EQQFLG---------- 184 (230)
T ss_pred EEEEEecc-------ceEEEEcC-CeeEeccCHH----HHhhhcCCceeeHHHHHHHHHHHH--hcCCCc----------
Confidence 33333331 12222222 4444433211 112223578888765543322211 112222
Q ss_pred CcccccchhhhhhhhhcCCc-EEEEEcchhHhhhccchhhhhccHHHH
Q psy17795 320 DFNHIQLEKEIIMPLAGSGK-AYVYQTSKWWSQLKSAGSAIYANRHYL 366 (523)
Q Consensus 320 ~~~~~~~~~dil~~li~~g~-v~~~~~~g~w~dIgt~~dyl~an~~~l 366 (523)
+|-...+...|. +..++.+.....|.|++|+..+...+.
T Consensus 185 --------td~~~~~~~~g~~v~~v~~~~~n~kItt~eDl~~a~~~l~ 224 (230)
T PRK13385 185 --------TDEASLVERSPHPVKLVQGSYYNIKLTTPEDMPLAKAILQ 224 (230)
T ss_pred --------CcHHHHHHHcCCCEEEEECCcccCcCCCHHHHHHHHHHHh
Confidence 233333444444 787777777789999999988876553
No 159
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.14 E-value=3.6e-10 Score=107.30 Aligned_cols=57 Identities=11% Similarity=0.037 Sum_probs=45.9
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEe
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVL 439 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~ 439 (523)
+++.+. ++.||+++.|++++.| .+++||++|.|++++.|.+++||++|.|++++.|.
T Consensus 13 ~~a~i~-~~~IG~~~~Ig~~a~I-~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~ 69 (204)
T TIGR03308 13 PTAELT-ESKLGRYTEIGERTRL-REVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRIN 69 (204)
T ss_pred CCcEEe-ccEeCCCcEECCCcEE-eCCEECCCCEECCCcEEeeeEECCCCEECCCCEEC
Confidence 456664 4678888888888888 47888888888888888888888888888888886
No 160
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=99.14 E-value=3.6e-10 Score=106.78 Aligned_cols=118 Identities=17% Similarity=0.191 Sum_probs=66.7
Q ss_pred ECCCCEECCCCEE--CCCcEECCCCEECCCCEEee---eEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCCCCC
Q psy17795 391 IHSSASVHPTAIV--GPNVSIDDGAVIGPGVRIKE---SIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPN 465 (523)
Q Consensus 391 i~~~~~I~~~~~I--~~~~~Ig~~~~I~~~~~I~~---s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~~~ 465 (523)
+|+++.|.+.+.+ +.++.||+++.|+.+|+|.+ +.||++|.|+++|.|... +...... -.-.+ ...
T Consensus 58 ig~~~~I~~~~~~~~g~ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I~~~--~h~~~~~--~r~~g-----~~~ 128 (203)
T PRK09527 58 VGENAWVEPPVYFSYGSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVT--GHPVHHE--LRKNG-----EMY 128 (203)
T ss_pred cCCCcEEcCCEEEeeCCCcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEEEeC--CCCCChh--hcccc-----ccc
Confidence 4455555555443 45667777777766666632 445555555554444311 0000000 00000 011
Q ss_pred CCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCCcEeCCCCCCc
Q psy17795 466 KAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKELTRSFKNE 520 (523)
Q Consensus 466 ~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i~~~~~~~ 520 (523)
...++||++++||.+++|.+| +.||++|+||+|++|... +.|++++ .+.|+.
T Consensus 129 ~~pi~IGd~v~IG~~~~I~~g-v~IG~~~vIgagsvV~kd-vp~~~v~-~G~PAk 180 (203)
T PRK09527 129 SFPITIGNNVWIGSHVVINPG-VTIGDNSVIGAGSVVTKD-IPPNVVA-AGVPCR 180 (203)
T ss_pred cCCeEECCCcEECCCCEEcCC-CEECCCCEECCCCEEccc-CCCCcEE-EeeCCE
Confidence 235889999999999999999 677999999999999543 3333333 444544
No 161
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=99.13 E-value=2.1e-10 Score=109.51 Aligned_cols=105 Identities=22% Similarity=0.319 Sum_probs=71.5
Q ss_pred CEECCCCEECCCcEECCCCEECCCCEEe-eeEECCCCEECCCCEEe-ceEECCCCEECCCcEEcCCCCCCCCCCCceecC
Q psy17795 395 ASVHPTAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVL-NSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMD 472 (523)
Q Consensus 395 ~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~ 472 (523)
+.|.|+++|+.+++|++|++|-+.+.|. ++.+++++.|.-++++. .++||+||.||.|+.|.|.. ...+...+.||
T Consensus 109 ~RI~p~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GVL--ep~~a~Pv~Ig 186 (271)
T COG2171 109 VRIVPGAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVL--EPLQANPVIIG 186 (271)
T ss_pred eeecCccEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeEEe--cCCCCCCeEEC
Confidence 4555555555555555555555555552 24455555555555554 46778888888888886632 22344578899
Q ss_pred CCCeecCCCeecCCcEEeCCCCEECCCcEE
Q psy17795 473 NPPLFNSNGKLNPSITILGDGVTVPGELIV 502 (523)
Q Consensus 473 ~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i 502 (523)
++|+||+++.+..| +.+|+||+|++|++|
T Consensus 187 dncliGAns~~veG-V~vGdg~VV~aGv~I 215 (271)
T COG2171 187 DNCLIGANSEVVEG-VIVGDGCVVAAGVFI 215 (271)
T ss_pred CccEeccccceEee-eEeCCCcEEecceEE
Confidence 99999999988999 677999999999988
No 162
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=99.12 E-value=1.3e-08 Score=97.62 Aligned_cols=63 Identities=19% Similarity=0.387 Sum_probs=52.4
Q ss_pred eEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccC-ChHHHHHHHHh
Q psy17795 95 TTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYY-PSADLQKFVLD 162 (523)
Q Consensus 95 ~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~-~~~~i~~~l~~ 162 (523)
-+||+||| .|+||+. ..||+|++++|+|+|.|+|+.|.+.+.+++|+||+.. ..+.+++.+.+
T Consensus 2 ~aIilAaG--~G~R~g~---~~pKQf~~l~Gkpvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~ 65 (221)
T PF01128_consen 2 AAIILAAG--SGSRMGS---GIPKQFLELGGKPVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSK 65 (221)
T ss_dssp EEEEEESS---STCCTS---SS-GGGSEETTEEHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHH
T ss_pred EEEEeCCc--cchhcCc---CCCCeeeEECCeEeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcC
Confidence 38999999 9999997 8999999999999999999999998899999999876 34455554443
No 163
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=99.11 E-value=1.9e-09 Score=103.80 Aligned_cols=167 Identities=15% Similarity=0.131 Sum_probs=97.8
Q ss_pred eEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEEE
Q psy17795 95 TTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRYL 174 (523)
Q Consensus 95 ~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~ 174 (523)
.+||||+| .|+||. +|+|++++|+|||+|+++.+.+...+++|+|++. .+.+.+++.+ ++..+.+.
T Consensus 3 ~~iIlA~G--~s~R~~------~K~l~~l~Gkpll~~~l~~l~~~~~~~~IvV~~~--~~~i~~~~~~----~~~~~~~~ 68 (223)
T cd02513 3 LAIIPARG--GSKGIP------GKNIRPLGGKPLIAWTIEAALESKLFDRVVVSTD--DEEIAEVARK----YGAEVPFL 68 (223)
T ss_pred EEEEecCC--CCCCCC------CcccchhCCccHHHHHHHHHHhCCCCCEEEEECC--cHHHHHHHHH----hCCCceee
Confidence 48999999 999994 4999999999999999999998634888888774 3456665544 34323333
Q ss_pred ecccccchhhhhcccccccccCCCchhHHH--Hhhccc---CCcceEEEEc----cc-h-HH--HHHHHHhcCCcceEEE
Q psy17795 175 QEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHW---VQEAVYFTLE----IR-S-DV--VILMHSLYSMAILVTV 241 (523)
Q Consensus 175 ~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~---~~d~~~Lvl~----i~-~-D~--l~~~h~~~~~~~~~tv 241 (523)
.+.+..++ ..+ +.++++ .+++.. ..+. ++++. ++ . ++ +++.+...+ ++.++
T Consensus 69 ~~~~~~~~-----------~~~--~~~~i~~~l~~l~~~~~~~d~-vlv~~~D~P~i~~~~i~~~i~~~~~~~--~~~~~ 132 (223)
T cd02513 69 RPAELATD-----------TAS--SIDVILHALDQLEELGRDFDI-VVLLQPTSPLRSAEDIDEAIELLLSEG--ADSVF 132 (223)
T ss_pred CChHHCCC-----------CCC--cHHHHHHHHHHHHHhCCCCCE-EEEeCCCCCcCCHHHHHHHHHHHHhCC--CCEEE
Confidence 33221110 001 667776 445431 1255 77765 22 2 22 666666655 66666
Q ss_pred EEEeeCCCCCcceeEEEEcCCCCcEEEEeecC-----CCcccceeeeeEEEeeHHHHH
Q psy17795 242 MATEATRQQSVYYGCIVRKQQTSEISHYVEKP-----STFVSTLVNCGVYLFSLDIFQ 294 (523)
Q Consensus 242 ~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp-----~~~~~~l~~~Giyif~~~il~ 294 (523)
.+.+.. +...++.. .++++..+..+.++. +.+.....++|+|+++++.+.
T Consensus 133 ~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~q~~~~~~~~n~~~y~~~~~~~~ 187 (223)
T cd02513 133 SVTEFH--RFPWRALG-LDDNGLEPVNYPEDKRTRRQDLPPAYHENGAIYIAKREALL 187 (223)
T ss_pred EEEecC--cCcHHhee-eccCCceeccCcccccCCcCCChhHeeECCEEEEEEHHHHH
Confidence 666543 22223332 222211222222211 134456788999999998653
No 164
>PLN02694 serine O-acetyltransferase
Probab=99.11 E-value=3e-10 Score=111.41 Aligned_cols=66 Identities=24% Similarity=0.289 Sum_probs=33.7
Q ss_pred cEECCCCEECCCCEECC--CcEECCCCEECCCCEEee-eEECCCCEECCCCEEeceEECCCCEECCCcEEcC
Q psy17795 389 VYIHSSASVHPTAIVGP--NVSIDDGAVIGPGVRIKE-SIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEG 457 (523)
Q Consensus 389 ~~i~~~~~I~~~~~I~~--~~~Ig~~~~I~~~~~I~~-s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~ 457 (523)
+.|++++.|++++.|.. +++||++|+||++|.|.+ +++|.. +..+...+++||++|.||.+|+|.+
T Consensus 161 vdI~p~A~IG~gv~Idh~tGVVIGe~a~IGdnv~I~~~VtLGg~---g~~~~~r~piIGd~V~IGagA~Ilg 229 (294)
T PLN02694 161 VDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGT---GKACGDRHPKIGDGVLIGAGATILG 229 (294)
T ss_pred EEeCCcceecCCEEEeCCCCeEECCCcEECCCCEEeecceeCCc---ccccCCCccEECCCeEECCeeEECC
Confidence 33444444444444432 455666666665555532 222221 2333445677777777777777754
No 165
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=99.11 E-value=7e-10 Score=108.12 Aligned_cols=109 Identities=21% Similarity=0.286 Sum_probs=71.6
Q ss_pred cCcEECCCCEECCCCEECCCcEECCCCEECCCC-EEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCCCCC
Q psy17795 387 GDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGV-RIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPN 465 (523)
Q Consensus 387 ~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~-~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~~~ 465 (523)
.++.|.+.+.|.-++.|+++++|.+++.|..++ +|+++.| ++.|++ +|+||++|.|++++.|.+..- ...
T Consensus 152 ~gVRI~~~~rVRlGAyLGeGtvVm~~a~VN~nAgtIG~~iI--~g~I~H-----dvvIGd~~~IgpGvsI~G~Ls--Gg~ 222 (319)
T TIGR03535 152 TGVRIGDADRVRLGAHLAEGTTVMHEGFVNFNAGTLGASMV--EGRISA-----GVVVGDGSDIGGGASIMGTLS--GGG 222 (319)
T ss_pred CccEECCCceeeeccEECCCCEEcCCCEEccCceEecCceE--EEEEcc-----CCEECCCCEECCCceecceec--CCC
Confidence 355555566665566666666666666666655 4544333 233333 577788888888888655211 112
Q ss_pred CCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-eCeEE
Q psy17795 466 KAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV-LNSIV 507 (523)
Q Consensus 466 ~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-~~~~v 507 (523)
...+.||++|+||+++.| | ..||++|+||+|++| .+..|
T Consensus 223 ~~pV~IGe~~~IGagA~I--G-I~IGd~~VVGAGaVVtkgT~v 262 (319)
T TIGR03535 223 KEVISIGERCLLGANSGL--G-ISLGDDCVVEAGLYVTAGTKV 262 (319)
T ss_pred cccEEECCCcEECCCCEE--C-eEECCCCEECCCCEEeCCeEE
Confidence 335899999999999998 7 567999999999988 45433
No 166
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.08 E-value=7.2e-10 Score=115.88 Aligned_cols=94 Identities=21% Similarity=0.378 Sum_probs=73.6
Q ss_pred ceEecCcEECCCCEECCCCEEC---CCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCC
Q psy17795 383 CKTIGDVYIHSSASVHPTAIVG---PNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTP 459 (523)
Q Consensus 383 ~~i~~~~~i~~~~~I~~~~~I~---~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~ 459 (523)
+.|++++.| .++.|+++|.|+ .+++||++|.|+++|.|.+|+|+++|.|+++|.|.+|+|++++.|++++.+.+..
T Consensus 283 ~~i~~~~~i-~~~~Ig~~~~I~~~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~~~ 361 (380)
T PRK05293 283 QYIAENAKV-KNSLVVEGCVVYGTVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGENAVIGDGVIIGGGK 361 (380)
T ss_pred CEECCCCEE-ecCEECCCCEEcceecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCCCEECCCCEEcCCC
Confidence 445555555 244566666664 4689999999999999999999999999999999999999999999999997742
Q ss_pred CCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE
Q psy17795 460 CDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV 502 (523)
Q Consensus 460 ~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i 502 (523)
.. ..+||+++.|+++++|
T Consensus 362 ~~-------------------------~~~ig~~~~~~~~~~~ 379 (380)
T PRK05293 362 EV-------------------------ITVIGENEVIGVGTVI 379 (380)
T ss_pred ce-------------------------eEEEeCCCCCCCCcEe
Confidence 21 1556777777777665
No 167
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.06 E-value=2e-09 Score=100.34 Aligned_cols=94 Identities=16% Similarity=0.265 Sum_probs=68.9
Q ss_pred eEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEEE
Q psy17795 95 TTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRYL 174 (523)
Q Consensus 95 ~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~ 174 (523)
.+|||||| .|+||++ ||+|++++|+|||+|+++.+.+. ++++|+|++++....+.+++.. ++. .++
T Consensus 2 ~~vIlAgG--~s~R~g~-----~K~l~~~~g~~li~~~i~~l~~~-~~~~i~vv~~~~~~~~~~~~~~----~~~--~~~ 67 (186)
T cd04182 2 AAIILAAG--RSSRMGG-----NKLLLPLDGKPLLRHALDAALAA-GLSRVIVVLGAEADAVRAALAG----LPV--VVV 67 (186)
T ss_pred eEEEECCC--CCCCCCC-----CceeCeeCCeeHHHHHHHHHHhC-CCCcEEEECCCcHHHHHHHhcC----CCe--EEE
Confidence 48999999 9999987 99999999999999999999986 8999999998866555554432 333 333
Q ss_pred ecc-cccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc
Q psy17795 175 QEF-WDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE 220 (523)
Q Consensus 175 ~~~-~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~ 220 (523)
... ...| ++++++ .+++....+. ++++.
T Consensus 68 ~~~~~~~G-----------------~~~~i~~al~~~~~~~~~-vlv~~ 98 (186)
T cd04182 68 INPDWEEG-----------------MSSSLAAGLEALPADADA-VLILL 98 (186)
T ss_pred eCCChhhC-----------------HHHHHHHHHHhccccCCE-EEEEe
Confidence 322 2234 777787 5555422456 77766
No 168
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.06 E-value=1.7e-09 Score=91.41 Aligned_cols=74 Identities=16% Similarity=0.360 Sum_probs=66.8
Q ss_pred CceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCC
Q psy17795 382 QCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGT 458 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~ 458 (523)
++.+ .++.|++++.|+ ++.| .+++|+++|.|++++.|.+|+|++++.||+++.|.+++||+++.|++++.+.+.
T Consensus 7 ~~~i-~~s~Ig~~~~I~-~~~I-~~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~~siig~~~~Ig~~~~v~~~ 80 (104)
T cd04651 7 RGEV-KNSLVSEGCIIS-GGTV-ENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRRAIIDKNVVIPDGVVIGGD 80 (104)
T ss_pred CCEE-EeEEECCCCEEc-CeEE-EeCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEEeEEECCCCEECCCCEECCC
Confidence 4555 357788888888 7888 689999999999999999999999999999999999999999999999999875
No 169
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=99.05 E-value=1.8e-09 Score=95.15 Aligned_cols=91 Identities=14% Similarity=0.257 Sum_probs=53.8
Q ss_pred CceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEee-eEECCCCEECCCCEEe-----c----eEECCCCEECC
Q psy17795 382 QCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE-SIILQGASIGNHSLVL-----N----SIVGRNSKVGN 451 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~-s~Ig~~~~Ig~~~~I~-----~----~iIg~~~~Ig~ 451 (523)
.+.+...+.|++++.|.+++.|..++.||++|.|.. .|+. ++|+++|.||++|+|. + +.||++|.||.
T Consensus 7 ~~~V~~~a~IG~GtvI~~gavV~~~a~IG~~~iIn~--~ig~~a~Ighd~~IG~~~~I~~~l~G~~~~pV~IG~~~~IG~ 84 (147)
T cd04649 7 ADRVRLGAYLAEGTTVMHEGFVNFNAGTLGNCMVEG--RISSGVIVGKGSDVGGGASIMGTLSGGGNNVISIGKRCLLGA 84 (147)
T ss_pred CCEECCCCEECCCcEECCCCEEccCCEECCCeEECC--cccCCEEECCCCEECCCCEEEEECCCCcccCEEECCCCEECC
Confidence 444555555555555555555555555555555541 2212 6778888888888886 2 66777777777
Q ss_pred CcEEcCCCCCCCCCCCceecCCCCeecCCCeecCC
Q psy17795 452 WSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPS 486 (523)
Q Consensus 452 ~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g 486 (523)
++.| + +.||+++.||+++++..+
T Consensus 85 ga~I-g-----------v~IG~~~vIGaGsvV~k~ 107 (147)
T cd04649 85 NSGI-G-----------ISLGDNCIVEAGLYVTAG 107 (147)
T ss_pred CCEE-e-----------EEECCCCEECCCCEEeCC
Confidence 7766 3 456666555555544444
No 170
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.05 E-value=3.3e-09 Score=97.17 Aligned_cols=110 Identities=16% Similarity=0.256 Sum_probs=76.1
Q ss_pred CCCEECCCCEEC--CCcEECCCCEECCCCEEee----eEECCCCEECCCCEEec-------------eEECCCCEECCCc
Q psy17795 393 SSASVHPTAIVG--PNVSIDDGAVIGPGVRIKE----SIILQGASIGNHSLVLN-------------SIVGRNSKVGNWS 453 (523)
Q Consensus 393 ~~~~I~~~~~I~--~~~~Ig~~~~I~~~~~I~~----s~Ig~~~~Ig~~~~I~~-------------~iIg~~~~Ig~~~ 453 (523)
.++.|+..+.|. +++.||+++.|+++|.|.. +.||++|.|+++|.|.. ++||+++.|++++
T Consensus 6 ~~~~i~~~~~i~g~~~I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~ 85 (161)
T cd03359 6 SGNKVSRKSVICGSQNIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENC 85 (161)
T ss_pred CCCeecchheeccCCCEEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCC
Confidence 344555555553 3667777777777777753 68999999999999973 4788999999998
Q ss_pred EEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-eCeEEcCCcEeC
Q psy17795 454 RVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV-LNSIVLPYKELT 514 (523)
Q Consensus 454 ~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-~~~~v~~~~~i~ 514 (523)
.+.+ ..|++++.|+.++.|.++ ++|++++.|+++++| .+..++|+..+.
T Consensus 86 ~i~~-----------~~Ig~~v~Ig~~~~Ig~~-~~I~~~~~i~~g~~V~~~~~i~~~~vv~ 135 (161)
T cd03359 86 VVNA-----------AQIGSYVHIGKNCVIGRR-CIIKDCVKILDGTVVPPDTVIPPYSVVS 135 (161)
T ss_pred EEEe-----------eEEcCCcEECCCCEEcCC-CEECCCcEECCCCEECCCCEeCCCCEEe
Confidence 8865 355666666666666666 566777777777766 455555555553
No 171
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=99.04 E-value=1.2e-09 Score=107.14 Aligned_cols=34 Identities=18% Similarity=0.324 Sum_probs=22.7
Q ss_pred eecCCCCeecCCCeecCCcEEeCCCCEECCCcEEe
Q psy17795 469 AKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVL 503 (523)
Q Consensus 469 v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~ 503 (523)
.+||++++||++++|..+ +.||++|+||+|++|.
T Consensus 194 p~IGd~V~IGaga~Ilgg-v~IG~~a~IGAgSvV~ 227 (273)
T PRK11132 194 PKIREGVMIGAGAKILGN-IEVGRGAKIGAGSVVL 227 (273)
T ss_pred CEECCCcEEcCCCEEcCC-CEECCCCEECCCCEEC
Confidence 455666666666666655 5668888888888773
No 172
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=99.03 E-value=1.5e-08 Score=96.79 Aligned_cols=78 Identities=18% Similarity=0.302 Sum_probs=62.1
Q ss_pred ccceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccC-ChHHHHHHHHhhhhccCe
Q psy17795 91 SCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYY-PSADLQKFVLDMVQEYKI 169 (523)
Q Consensus 91 ~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~-~~~~i~~~l~~~~~~~~~ 169 (523)
+|.+-+|||||| .|+||+. ..||++++++|+||++|+|+.|..++.+++|+|++.. ....+.++... ..+-
T Consensus 2 ~~~~~~vilAaG--~G~R~~~---~~pKq~l~l~g~pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~---~~~~ 73 (230)
T COG1211 2 RMMVSAVILAAG--FGSRMGN---PVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPKL---SADK 73 (230)
T ss_pred CceEEEEEEcCc--cccccCC---CCCceEEEECCEEehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhhh---ccCC
Confidence 355679999999 9999998 9999999999999999999999999999999999986 44445554421 1233
Q ss_pred eEEEEec
Q psy17795 170 NIRYLQE 176 (523)
Q Consensus 170 ~i~~~~~ 176 (523)
.+.++..
T Consensus 74 ~v~~v~G 80 (230)
T COG1211 74 RVEVVKG 80 (230)
T ss_pred eEEEecC
Confidence 4656644
No 173
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=99.03 E-value=1.6e-09 Score=101.08 Aligned_cols=52 Identities=19% Similarity=0.242 Sum_probs=39.5
Q ss_pred CceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCCcEeCCCCCCcc
Q psy17795 467 AFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKELTRSFKNEI 521 (523)
Q Consensus 467 ~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i~~~~~~~~ 521 (523)
..+.||++++||.+++|.++ +.||++|+|+++++|... |.+++++ .+.|+..
T Consensus 128 ~~v~IGd~v~IG~~a~I~~g-v~IG~~~vIgagsvV~~d-i~~~~i~-~G~PAr~ 179 (183)
T PRK10092 128 KPVTIGNNVWIGGRAVINPG-VTIGDNVVVASGAVVTKD-VPDNVVV-GGNPARI 179 (183)
T ss_pred CCeEECCCcEECCCCEECCC-CEECCCCEECCCCEEccc-cCCCcEE-EecCcEE
Confidence 46888999999999999999 677999999999999544 3444444 4556543
No 174
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.01 E-value=3.1e-09 Score=98.16 Aligned_cols=105 Identities=10% Similarity=0.048 Sum_probs=61.3
Q ss_pred CCcEECCCCEECCCCEEe---eeEECCCCEECCCCEEeceE-ECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCC
Q psy17795 405 PNVSIDDGAVIGPGVRIK---ESIILQGASIGNHSLVLNSI-VGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSN 480 (523)
Q Consensus 405 ~~~~Ig~~~~I~~~~~I~---~s~Ig~~~~Ig~~~~I~~~i-Ig~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~ 480 (523)
.++.||++|.|+.++.|. ..+||++|.|+++|+|.... -.+......+.. ....+.||++++||.+
T Consensus 61 ~~i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~~~h~~~~~~~~~~~~----------~~~~v~IG~~~~Ig~~ 130 (169)
T cd03357 61 YNIHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYTAGHPLDPEERNRGLE----------YAKPITIGDNVWIGGG 130 (169)
T ss_pred CcCEECCCceEcCCEEEeccCcEEECCCCEECCCCEEEeCCCCCChhHccccce----------ecCCcEeCCCEEECCC
Confidence 345555555555555553 24556666666655554110 000000001111 1235788889999999
Q ss_pred CeecCCcEEeCCCCEECCCcEEeCeEEcCCcEeCCCCCCccc
Q psy17795 481 GKLNPSITILGDGVTVPGELIVLNSIVLPYKELTRSFKNEIL 522 (523)
Q Consensus 481 ~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i~~~~~~~~i 522 (523)
++|.++ +.||++|+||++++|.+. |.++.++ .+.|+.+|
T Consensus 131 a~I~~g-v~Ig~~~~VgagavV~~~-vp~~~vv-~G~PAkvi 169 (169)
T cd03357 131 VIILPG-VTIGDNSVIGAGSVVTKD-IPANVVA-AGNPARVI 169 (169)
T ss_pred CEEeCC-CEECCCCEECCCCEEccc-cCCCcEE-EccccEEC
Confidence 999888 777999999999999664 4555444 46676543
No 175
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=99.00 E-value=3.9e-09 Score=89.74 Aligned_cols=102 Identities=21% Similarity=0.333 Sum_probs=60.4
Q ss_pred cEECCCCEECCCCEECC--CcEECCCCEECCCCEEeee---EECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCCC
Q psy17795 389 VYIHSSASVHPTAIVGP--NVSIDDGAVIGPGVRIKES---IILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPN 463 (523)
Q Consensus 389 ~~i~~~~~I~~~~~I~~--~~~Ig~~~~I~~~~~I~~s---~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~ 463 (523)
+.|++++.|++++.|.+ ++.||++|.|+++|.|.++ .++.++.+........++||++|.|++++.+.
T Consensus 2 v~Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~------- 74 (109)
T cd04647 2 ISIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVIL------- 74 (109)
T ss_pred eEECCCcEECCCCEEecCCceEECCCCEECCCCEEECCCCCCCccccccccccccCCeEECCCCEECCCCEEc-------
Confidence 46677777777777665 6777777777777777653 22222222222333355555555555555553
Q ss_pred CCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCCcEeCCCCCCcc
Q psy17795 464 PNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKELTRSFKNEI 521 (523)
Q Consensus 464 ~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i~~~~~~~~ 521 (523)
++ ++||++|.|++++.|.. .+.++..+ .+.|+..
T Consensus 75 ---------------------~~-~~ig~~~~i~~~~~v~~-~i~~~~i~-~g~pa~~ 108 (109)
T cd04647 75 ---------------------PG-VTIGDGAVVGAGSVVTK-DVPPNSIV-AGNPAKV 108 (109)
T ss_pred ---------------------CC-CEECCCCEECCCCEEee-ECCCCCEE-EccccEe
Confidence 33 66788888888888863 34455444 4556654
No 176
>PRK10502 putative acyl transferase; Provisional
Probab=99.00 E-value=3.8e-09 Score=98.67 Aligned_cols=110 Identities=15% Similarity=0.102 Sum_probs=71.5
Q ss_pred CceEecCcEECCCCEECC--CCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEe----------------ceEE
Q psy17795 382 QCKTIGDVYIHSSASVHP--TAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVL----------------NSIV 443 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~~--~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~----------------~~iI 443 (523)
++.|+.++.|++++.|.. +..|++++.|+++|.|.... .+.||++|.|+++++|. ..+|
T Consensus 51 ga~iG~~~~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~~~~---~v~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~i~I 127 (182)
T PRK10502 51 GAKIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLYNLG---EITIGAHCVISQKSYLCTGSHDYSDPHFDLNTAPIVI 127 (182)
T ss_pred ccccCCCcEEcCCEEEecCCeEEECCCeEECCCceecccC---ceEECCCcEECCCeEEECCCCCCcCCCcccccCCEEE
Confidence 566777788888877754 47788888888888886432 34456666666666552 3688
Q ss_pred CCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCCcEeCCC
Q psy17795 444 GRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKELTRS 516 (523)
Q Consensus 444 g~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i~~~ 516 (523)
|++|.||.++.|.+ .++||+++.|++++++... +++++++.+. |.+.|+..
T Consensus 128 gd~~~Ig~~a~I~~----------Gv~Ig~~~vIga~svV~~~---------v~~~~v~~G~---Pa~~ik~r 178 (182)
T PRK10502 128 GEGCWLAADVFVAP----------GVTIGSGAVVGARSSVFKS---------LPANTICRGN---PAVPIRPR 178 (182)
T ss_pred cCCcEEcCCCEEcC----------CCEECCCCEECCCCEEecc---------cCCCcEEECC---cceEeccc
Confidence 88888888888865 3667777777766643322 5566655332 44455443
No 177
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.99 E-value=3e-08 Score=92.44 Aligned_cols=221 Identities=13% Similarity=0.098 Sum_probs=141.3
Q ss_pred cceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeE
Q psy17795 92 CGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINI 171 (523)
Q Consensus 92 ~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i 171 (523)
|...+||+|-- ..|||.- |||-.|+|+|||.|+.++..++ +.++++|.+.+ +.+.+.+.+ +|.++
T Consensus 2 ~~~~viIPAR~--~STRLpg------KPLadI~GkpmI~rV~e~a~~s-~~~rvvVATDd--e~I~~av~~----~G~~a 66 (247)
T COG1212 2 MKFVVIIPARL--ASTRLPG------KPLADIGGKPMIVRVAERALKS-GADRVVVATDD--ERIAEAVQA----FGGEA 66 (247)
T ss_pred CceEEEEecch--hcccCCC------CchhhhCCchHHHHHHHHHHHc-CCCeEEEEcCC--HHHHHHHHH----hCCEE
Confidence 34457788777 7888854 9999999999999999999986 99999999875 578887776 56666
Q ss_pred EEEecccccchhhhhcccccccccCCCchhHHHHhhcccCCcceEEEEccc-------hHH---HHHHHHhcCCcceEEE
Q psy17795 172 RYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYFTLEIR-------SDV---VILMHSLYSMAILVTV 241 (523)
Q Consensus 172 ~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~~~~i~~~~d~~~Lvl~i~-------~D~---l~~~h~~~~~~~~~tv 241 (523)
..-..+.+.| ..|.+.++. .+.. +++ -+|+|+- ... +.+..++.+ +++.-
T Consensus 67 vmT~~~h~SG--------------TdR~~Ev~~--~l~~-~~~-~iIVNvQGDeP~i~p~~I~~~~~~L~~~~--~~~aT 126 (247)
T COG1212 67 VMTSKDHQSG--------------TDRLAEVVE--KLGL-PDD-EIIVNVQGDEPFIEPEVIRAVAENLENSN--ADMAT 126 (247)
T ss_pred EecCCCCCCc--------------cHHHHHHHH--hcCC-Ccc-eEEEEccCCCCCCCHHHHHHHHHHHHhCC--cceee
Confidence 5556667776 011344443 2221 122 4666611 112 555556555 67666
Q ss_pred EEEeeCCCC---CcceeEEEEcCCCCcEEEEeecCCCcc-------cceeeeeEEEeeHHHHHHHHHhhccccccccccc
Q psy17795 242 MATEATRQQ---SVYYGCIVRKQQTSEISHYVEKPSTFV-------STLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGN 311 (523)
Q Consensus 242 ~~~~~~~~~---~~~~g~v~~d~~~~~V~~~~ekp~~~~-------~~l~~~Giyif~~~il~~l~~~~~~~~~e~~~~~ 311 (523)
++.+..+++ ..+--.++.|.+ |+-+-|...|--+. ..+--.|+|.|++.+++.+....+..-
T Consensus 127 l~~~i~~~ee~~nPN~VKvV~d~~-g~ALYFSRs~iP~~rd~~~~~p~l~HIGIYayr~~~L~~f~~~~ps~L------- 198 (247)
T COG1212 127 LAVKITDEEEAFNPNVVKVVLDKE-GYALYFSRAPIPYGRDNFGGTPFLRHIGIYAYRAGFLERFVALKPSPL------- 198 (247)
T ss_pred eeeecCCHHHhcCCCcEEEEEcCC-CcEEEEEcCCCCCcccccCCcchhheeehHHhHHHHHHHHHhcCCchh-------
Confidence 666553221 112234557876 89999988764221 346678999999999887766433220
Q ss_pred ccccCCCCCcccccchhhhhhhhhcCCcEEEEEcchhH-hhhccchhhhhccHHHH
Q psy17795 312 YMVNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWW-SQLKSAGSAIYANRHYL 366 (523)
Q Consensus 312 ~~~~~~~~~~~~~~~~~dil~~li~~g~v~~~~~~g~w-~dIgt~~dyl~an~~~l 366 (523)
| ...++ +-|..|-...++.+...+..- ..++|++|+-++...+.
T Consensus 199 -----E----~~E~L--EQLR~Le~G~kI~v~i~~~~p~~gVDT~EDLe~v~~~~~ 243 (247)
T COG1212 199 -----E----KIESL--EQLRVLENGEKIHVEIVKEVPSIGVDTPEDLERVRKILS 243 (247)
T ss_pred -----H----HHHHH--HHHHHHHcCCeeEEEEeccCCCCCCCCHHHHHHHHHHHH
Confidence 0 01111 334444444458888777554 89999999887766554
No 178
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.98 E-value=4e-09 Score=84.69 Aligned_cols=47 Identities=26% Similarity=0.323 Sum_probs=34.7
Q ss_pred CCCEECCCCEEe-eeEECCCCEECCCCEEeceEECCCCEECCCcEEcC
Q psy17795 411 DGAVIGPGVRIK-ESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEG 457 (523)
Q Consensus 411 ~~~~I~~~~~I~-~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~ 457 (523)
+++.|++++.|+ +++|+++|.||++|.|.+++|++++.|++++.|.+
T Consensus 4 ~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~ 51 (80)
T cd05824 4 PSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKS 51 (80)
T ss_pred CCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeC
Confidence 333444444442 24566788889999999999999999999999976
No 179
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=98.98 E-value=5.2e-09 Score=90.54 Aligned_cols=73 Identities=19% Similarity=0.264 Sum_probs=35.1
Q ss_pred eEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcC
Q psy17795 384 KTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEG 457 (523)
Q Consensus 384 ~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~ 457 (523)
.+++++.|++++.|++++.|+++++||++|.|++++.+.++.+ .+..+..++.+.+++||++|.||+++.+..
T Consensus 12 ~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~-~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~ 84 (119)
T cd03358 12 FIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLY-PRSKIYRKWELKGTTVKRGASIGANATILP 84 (119)
T ss_pred EECCCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCC-CccccccccccCCcEECCCcEECcCCEEeC
Confidence 3344444444444444444444444444444444444433222 222223345566677777777777777643
No 180
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=98.98 E-value=5.5e-09 Score=97.84 Aligned_cols=57 Identities=18% Similarity=0.334 Sum_probs=49.8
Q ss_pred EEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHH
Q psy17795 96 TNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFV 160 (523)
Q Consensus 96 ~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l 160 (523)
+|||||| .|+||++ ||+|++++|+|||+|+++.+.+. ++++|+|++++..+.+.+.+
T Consensus 2 ~iIla~G--~s~R~g~-----~K~ll~~~g~pll~~~i~~l~~~-~~~~iivv~~~~~~~~~~~~ 58 (188)
T TIGR03310 2 AIILAAG--LSSRMGQ-----NKLLLPYKGKTILEHVVDNALRL-FFDEVILVLGHEADELVALL 58 (188)
T ss_pred eEEECCC--CcccCCC-----CceecccCCeeHHHHHHHHHHHc-CCCcEEEEeCCcHHHHHHHh
Confidence 7999999 9999985 89999999999999999999985 89999999988665554443
No 181
>PLN02739 serine acetyltransferase
Probab=98.97 E-value=3e-09 Score=106.33 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=17.2
Q ss_pred ecCCCCeecCCCeecCCcEEeCCCCEECCCcEE
Q psy17795 470 KMDNPPLFNSNGKLNPSITILGDGVTVPGELIV 502 (523)
Q Consensus 470 ~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i 502 (523)
+||++|+||++++|..+ +.||++|+||+|++|
T Consensus 259 ~IGd~V~IGagA~IlG~-V~IGd~aiIGAGSVV 290 (355)
T PLN02739 259 KIGDGALLGACVTILGN-ISIGAGAMVAAGSLV 290 (355)
T ss_pred EECCCCEEcCCCEEeCC-eEECCCCEECCCCEE
Confidence 34444444444444444 555777777777766
No 182
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=98.96 E-value=3e-09 Score=97.35 Aligned_cols=33 Identities=15% Similarity=0.265 Sum_probs=18.6
Q ss_pred eecCCCCeecCCCeecCCcEEeCCCCEECCCcEE
Q psy17795 469 AKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV 502 (523)
Q Consensus 469 v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i 502 (523)
-+||+++.||+++.|... ..||+|+.||+|++|
T Consensus 120 PtIg~~V~IGagAkILG~-I~IGd~akIGA~sVV 152 (194)
T COG1045 120 PTIGNGVYIGAGAKILGN-IEIGDNAKIGAGSVV 152 (194)
T ss_pred CccCCCeEECCCCEEEcc-eEECCCCEECCCceE
Confidence 344444444444444444 345777777777777
No 183
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=98.95 E-value=1.1e-08 Score=96.64 Aligned_cols=83 Identities=13% Similarity=0.183 Sum_probs=39.0
Q ss_pred cCcEECCCCEECCCCEEC--CCcEECCCCEECCCCEEeeeEECCCCEE---CCCC-EEeceEECCCCEECCCcEEcCCCC
Q psy17795 387 GDVYIHSSASVHPTAIVG--PNVSIDDGAVIGPGVRIKESIILQGASI---GNHS-LVLNSIVGRNSKVGNWSRVEGTPC 460 (523)
Q Consensus 387 ~~~~i~~~~~I~~~~~I~--~~~~Ig~~~~I~~~~~I~~s~Ig~~~~I---g~~~-~I~~~iIg~~~~Ig~~~~i~~~~~ 460 (523)
.++.||+++.|+.++.|. .++.||++|.|+++|.|... ++.... ..+. ....++||++|.||.++.|.+
T Consensus 74 ~ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I~~~--~h~~~~~~r~~g~~~~~pi~IGd~v~IG~~~~I~~--- 148 (203)
T PRK09527 74 SNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVT--GHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINP--- 148 (203)
T ss_pred CCcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEEEeC--CCCCChhhccccccccCCeEECCCcEECCCCEEcC---
Confidence 345555555555555542 23555555555555555321 000000 0001 112456666666666666654
Q ss_pred CCCCCCCceecCCCCeecCCC
Q psy17795 461 DPNPNKAFAKMDNPPLFNSNG 481 (523)
Q Consensus 461 ~~~~~~~~v~I~~~~~ig~~~ 481 (523)
.++||++++|++++
T Consensus 149 -------gv~IG~~~vIgags 162 (203)
T PRK09527 149 -------GVTIGDNSVIGAGS 162 (203)
T ss_pred -------CCEECCCCEECCCC
Confidence 24555555555554
No 184
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=98.94 E-value=7.6e-09 Score=101.48 Aligned_cols=93 Identities=15% Similarity=0.176 Sum_probs=63.5
Q ss_pred CceEecCcEECCCCEECCCCEECCCcEECCCCE-ECCCCE---Ee-eeEECCCCEECCCCEEe-----c----eEECCCC
Q psy17795 382 QCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAV-IGPGVR---IK-ESIILQGASIGNHSLVL-----N----SIVGRNS 447 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~-I~~~~~---I~-~s~Ig~~~~Ig~~~~I~-----~----~iIg~~~ 447 (523)
+..|.+.+.|.+++.|++++.|.++++|+.++. +|++++ |. .++||++|.||.+|+|. + +.||++|
T Consensus 178 gVrI~~sa~Vr~gA~LGeGT~IM~~a~Vn~nAgtiG~~~IEgrInsGavIGhds~IG~gasIg~tLsGg~~~~V~IGe~~ 257 (341)
T TIGR03536 178 GVRIADTARVRLGAYVGEGTTVMHEGFINFNAGTEGPSMVEGRISAGVMVGKGSDLGGGCSTMGTLSGGGNIVISVGEGC 257 (341)
T ss_pred CcEEcCCCeEcCCcEECCCCEEecCCEECcCcEecCCceEecccccCCEECCCCEECCCCEEeEEEeCCCceeEEECCCc
Confidence 556667777777777777777777777777777 565555 32 26777888888888874 3 6677777
Q ss_pred EECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCC
Q psy17795 448 KVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPS 486 (523)
Q Consensus 448 ~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g 486 (523)
.||.++.| + +.||++|.||++++|..+
T Consensus 258 lIGagA~I-G-----------I~IGd~~iIGAGavVtag 284 (341)
T TIGR03536 258 LLGANAGI-G-----------IPLGDRCTVEAGLYITAG 284 (341)
T ss_pred EECCCCEE-e-----------eEECCCCEECCCCEEeCC
Confidence 77777777 3 567777666666655555
No 185
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=98.94 E-value=4.2e-08 Score=94.65 Aligned_cols=165 Identities=11% Similarity=0.060 Sum_probs=101.0
Q ss_pred EEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEEEe
Q psy17795 96 TNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRYLQ 175 (523)
Q Consensus 96 ~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~ 175 (523)
|||+|+| .++|| | +|.+++++|+|||.|+++.+.+...+++|+|++.. +++.+...+ ++..+.+.+
T Consensus 2 aiIpArG--~Skr~-~-----~Knl~~l~GkpLi~~ti~~a~~s~~~d~IvVstd~--~~i~~~a~~----~g~~v~~~r 67 (222)
T TIGR03584 2 AIIPARG--GSKRI-P-----RKNIKPFCGKPMIAYSIEAALNSGLFDKVVVSTDD--EEIAEVAKS----YGASVPFLR 67 (222)
T ss_pred EEEccCC--CCCCC-C-----CccchhcCCcCHHHHHHHHHHhCCCCCEEEEeCCC--HHHHHHHHH----cCCEeEEeC
Confidence 7999999 89999 4 59999999999999999999987568888876653 456665543 565555544
Q ss_pred cccccchhhhhcccccccccCCCchhHHH--Hhhcc--cCCcceEEEEc----cc--hHH--HHHHHHhcCCcceEEEEE
Q psy17795 176 EFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLH--WVQEAVYFTLE----IR--SDV--VILMHSLYSMAILVTVMA 243 (523)
Q Consensus 176 ~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~--~~~d~~~Lvl~----i~--~D~--l~~~h~~~~~~~~~tv~~ 243 (523)
+.+..+ +..+ +.++++ .+.+. ...|. ++++. ++ .++ +++.+.+.+ ++..+.+
T Consensus 68 ~~~l~~-----------d~~~--~~~si~~~l~~l~~~~~~d~-v~~l~~tsPl~~~~~I~~~i~~~~~~~--~ds~~sv 131 (222)
T TIGR03584 68 PKELAD-----------DFTG--TAPVVKHAIEELKLQKQYDH-ACCIYATAPFLQAKILKEAFELLKQPN--AHFVFSV 131 (222)
T ss_pred hHHHcC-----------CCCC--chHHHHHHHHHHhhcCCCCE-EEEecCCCCcCCHHHHHHHHHHHHhCC--CCEEEEe
Confidence 332211 1122 667777 44442 12344 66655 22 244 666665555 6766666
Q ss_pred EeeCCCCCcceeEEEEcCCCCcEEEEeec----C-C-CcccceeeeeEEEeeHHHHH
Q psy17795 244 TEATRQQSVYYGCIVRKQQTSEISHYVEK----P-S-TFVSTLVNCGVYLFSLDIFQ 294 (523)
Q Consensus 244 ~~~~~~~~~~~g~v~~d~~~~~V~~~~ek----p-~-~~~~~l~~~Giyif~~~il~ 294 (523)
.+... .+ .+. ...+++ |++..+... + + .+.....+.++|+++++.+.
T Consensus 132 ~~~~~-~~-~~~-~~~~~~-g~~~~~~~~~~~~~rQd~~~~y~~nga~y~~~~~~~~ 184 (222)
T TIGR03584 132 TSFAF-PI-QRA-FKLKEN-GGVEMFFPEHFNTRSQDLEEAYHDAGQFYWGKSQAWL 184 (222)
T ss_pred eccCC-Ch-HHh-eEECCC-CcEEecCCCcccCCCCCCchheeeCCeEEEEEHHHHH
Confidence 65432 12 122 233444 666554421 1 1 12345679999999998763
No 186
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.93 E-value=7.9e-09 Score=86.79 Aligned_cols=75 Identities=21% Similarity=0.226 Sum_probs=64.5
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEG 457 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~ 457 (523)
+.+.+.++++|++++.|++++.|+++++||++|.|+. .|.+++|++++.|++++.|.+++||+++.||+++.+.+
T Consensus 22 ~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg~siIg~~v~ig~~~~~~~ 96 (101)
T cd05635 22 PFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLGHSYLGSWCNLGAGTNNSD 96 (101)
T ss_pred CCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEeeeEECCCCEECCCceecc
Confidence 4566777788888888888888888888888888864 57789999999999999999999999999999999876
No 187
>PRK10191 putative acyl transferase; Provisional
Probab=98.92 E-value=6.7e-09 Score=92.93 Aligned_cols=18 Identities=39% Similarity=0.575 Sum_probs=11.5
Q ss_pred EEeCCCCEECCCcEEeCe
Q psy17795 488 TILGDGVTVPGELIVLNS 505 (523)
Q Consensus 488 ~iIG~~~~Ig~~~~i~~~ 505 (523)
+.||+++.|+++++|.+.
T Consensus 111 v~IG~~~~Igags~V~~d 128 (146)
T PRK10191 111 ITIGNNVTVGAGSVVLDS 128 (146)
T ss_pred CEECCCCEECCCCEECCc
Confidence 555777777777766443
No 188
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=98.90 E-value=1.7e-08 Score=85.78 Aligned_cols=52 Identities=12% Similarity=0.190 Sum_probs=39.0
Q ss_pred CceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCCcEeCCCCCCcc
Q psy17795 467 AFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKELTRSFKNEI 521 (523)
Q Consensus 467 ~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i~~~~~~~~ 521 (523)
+.+.|+++|+|+.++.|.++ +.||++|.|+++++|.+. +.++..+ .+.|+..
T Consensus 55 ~~v~Ig~~~~ig~~~~i~~g-~~Ig~~~~i~~gs~v~~~-~~~~~~~-~G~Pa~~ 106 (107)
T cd05825 55 APIVIGDGAWVAAEAFVGPG-VTIGEGAVVGARSVVVRD-LPAWTVY-AGNPAVP 106 (107)
T ss_pred CCEEECCCCEECCCCEECCC-CEECCCCEECCCCEEeCc-CCCCCEE-ECCccEe
Confidence 45778888888888888888 778999999999999654 3444444 4666543
No 189
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=98.89 E-value=9.9e-09 Score=109.17 Aligned_cols=104 Identities=12% Similarity=0.211 Sum_probs=72.3
Q ss_pred CCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECC----------------C---CEECCCc
Q psy17795 393 SSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGR----------------N---SKVGNWS 453 (523)
Q Consensus 393 ~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~----------------~---~~Ig~~~ 453 (523)
+++.+ .++.|.+ ++|+++|+|+ +|.|++|+|+++|.||++|+|.+++|+. + +.||++|
T Consensus 304 ~~~~~-~~~~i~~-s~I~~~~~I~-~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~ 380 (436)
T PLN02241 304 PPSKI-EDCRITD-SIISHGCFLR-ECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENT 380 (436)
T ss_pred CCcEe-cCCeEEE-eEEcCCcEEc-CeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCC
Confidence 55666 3566644 9999999999 9999999999999999999999888855 2 3788888
Q ss_pred EEcCCCCCCCCCCCceecCCCCeecCCCeecC-----CcEEeCCCCEECCCc-EE-eCeEEcCC
Q psy17795 454 RVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNP-----SITILGDGVTVPGEL-IV-LNSIVLPY 510 (523)
Q Consensus 454 ~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~-----g~~iIG~~~~Ig~~~-~i-~~~~v~~~ 510 (523)
.+.+ +.|+++++||.++.+.. +-.++|++|.|++|. +| .++.+.++
T Consensus 381 ~i~~-----------~vI~~~v~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 433 (436)
T PLN02241 381 KIRN-----------AIIDKNARIGKNVVIINKDGVQEADREEEGYYIRSGIVVILKNAVIPDG 433 (436)
T ss_pred EEcc-----------eEecCCCEECCCcEEecccccCCccccccccEEeCCEEEEcCCcEeCCC
Confidence 8865 34566666666655542 223446666666663 33 33344443
No 190
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=98.89 E-value=1.5e-08 Score=99.44 Aligned_cols=92 Identities=20% Similarity=0.265 Sum_probs=53.6
Q ss_pred CcEECCCCEECCCCEEC--CCcEECCCCEECCCCEEeeeEECCCCEECC---CCEEeceEECCCCEECCCcEEcCCCCCC
Q psy17795 388 DVYIHSSASVHPTAIVG--PNVSIDDGAVIGPGVRIKESIILQGASIGN---HSLVLNSIVGRNSKVGNWSRVEGTPCDP 462 (523)
Q Consensus 388 ~~~i~~~~~I~~~~~I~--~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~---~~~I~~~iIg~~~~Ig~~~~i~~~~~~~ 462 (523)
++.|++++.|++++.|+ .+++||++|+||++|.| +++++||. .+...+++||++|.||.||.|.+
T Consensus 141 gidI~~~a~IG~g~~I~h~~givIG~~a~IGdnv~I-----~~~VtiGg~~~~~~~~~p~IGd~V~IGaga~Ilg----- 210 (273)
T PRK11132 141 QVDIHPAAKIGRGIMLDHATGIVIGETAVIENDVSI-----LQSVTLGGTGKTSGDRHPKIREGVMIGAGAKILG----- 210 (273)
T ss_pred eeEecCcceECCCeEEcCCCCeEECCCCEECCCCEE-----cCCcEEecCcccCCCcCCEECCCcEEcCCCEEcC-----
Confidence 34444444444444443 23456666666655555 24444442 12223578888888888888876
Q ss_pred CCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEe
Q psy17795 463 NPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVL 503 (523)
Q Consensus 463 ~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~ 503 (523)
.++||+++.||++++|... |++++++.
T Consensus 211 -----gv~IG~~a~IGAgSvV~~d---------Vp~~~~v~ 237 (273)
T PRK11132 211 -----NIEVGRGAKIGAGSVVLQP---------VPPHTTAA 237 (273)
T ss_pred -----CCEECCCCEECCCCEECcc---------cCCCcEEE
Confidence 4677777777777643322 66666663
No 191
>KOG4042|consensus
Probab=98.88 E-value=2.2e-09 Score=92.73 Aligned_cols=110 Identities=20% Similarity=0.231 Sum_probs=82.1
Q ss_pred cEECCCCEECCCCEECCCcEECCCCEECCCCEEee----eEECCCCEECCCCEEec--------------eEECCCCEEC
Q psy17795 389 VYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE----SIILQGASIGNHSLVLN--------------SIVGRNSKVG 450 (523)
Q Consensus 389 ~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~----s~Ig~~~~Ig~~~~I~~--------------~iIg~~~~Ig 450 (523)
+.|.|++++...+.|.+.++|+++|+|.+.+++-. .+||+|+.|.+.+.|.+ -+||.+....
T Consensus 9 vkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFe 88 (190)
T KOG4042|consen 9 VKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFE 88 (190)
T ss_pred eeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEE
Confidence 66777777777777778888888888888777633 67888888888777753 4677777776
Q ss_pred CCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCC
Q psy17795 451 NWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPY 510 (523)
Q Consensus 451 ~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~ 510 (523)
-||.... .++|++..|++.+.+.+| +.+.+||.||+++.+......|.
T Consensus 89 Vgc~s~A-----------~kvGd~NVieskayvg~g-v~vssgC~vGA~c~v~~~q~lpe 136 (190)
T KOG4042|consen 89 VGCKSSA-----------KKVGDRNVIESKAYVGDG-VSVSSGCSVGAKCTVFSHQNLPE 136 (190)
T ss_pred eechhhh-----------hhhcCcceEeeeeEecCC-cEEcCCceeccceEEecccccCC
Confidence 6666654 468888899999999898 66699999999998855444433
No 192
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.88 E-value=2e-08 Score=84.38 Aligned_cols=81 Identities=26% Similarity=0.482 Sum_probs=45.7
Q ss_pred EECCCCEECCCCEECC--CcEECCCCEECCCCEEeeeEECCCCEECCCCE---EeceEECCCCEECCCcEEcCCCCCCCC
Q psy17795 390 YIHSSASVHPTAIVGP--NVSIDDGAVIGPGVRIKESIILQGASIGNHSL---VLNSIVGRNSKVGNWSRVEGTPCDPNP 464 (523)
Q Consensus 390 ~i~~~~~I~~~~~I~~--~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~---I~~~iIg~~~~Ig~~~~i~~~~~~~~~ 464 (523)
.|++++.|++++.|+. .++|++++.|++++.| ++++.|++++. +..++||+++.|+.++.+.+.
T Consensus 4 ~i~~~~~ig~~~~i~~~~~~~ig~~~~Ig~~~~i-----~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~------ 72 (101)
T cd03354 4 DIHPGAKIGPGLFIDHGTGIVIGETAVIGDNCTI-----YQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGN------ 72 (101)
T ss_pred EeCCCCEECCCEEECCCCeEEECCCCEECCCCEE-----cCCCEECCCccCCcCCCCEECCCcEEcCCCEEECc------
Confidence 3444444444444432 3455555555555543 34555555554 446677777777777666542
Q ss_pred CCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeC
Q psy17795 465 NKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLN 504 (523)
Q Consensus 465 ~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~ 504 (523)
+.||++|.|+++++|.+
T Consensus 73 -----------------------~~Ig~~~~i~~~~~i~~ 89 (101)
T cd03354 73 -----------------------ITIGDNVKIGANAVVTK 89 (101)
T ss_pred -----------------------CEECCCCEECCCCEECc
Confidence 55677777777777743
No 193
>PLN02357 serine acetyltransferase
Probab=98.88 E-value=1e-08 Score=103.37 Aligned_cols=67 Identities=13% Similarity=0.176 Sum_probs=30.6
Q ss_pred ceEecCcEECCCCEECC--CCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcC
Q psy17795 383 CKTIGDVYIHSSASVHP--TAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEG 457 (523)
Q Consensus 383 ~~i~~~~~i~~~~~I~~--~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~ 457 (523)
..|++.+.||++++|.+ +++|+++++||++|.|..+++|+.. +......+++||++|.||.|+.|.+
T Consensus 227 vdI~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~--------g~~~g~~~piIGd~V~IGagA~Ilg 295 (360)
T PLN02357 227 VDIHPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGT--------GKQSGDRHPKIGDGVLIGAGTCILG 295 (360)
T ss_pred eeeCCCCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCc--------cccCCccCceeCCCeEECCceEEEC
Confidence 34555555555555554 3344444444444444444444321 0011122456666666666666543
No 194
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.88 E-value=1.5e-08 Score=80.21 Aligned_cols=66 Identities=30% Similarity=0.535 Sum_probs=44.7
Q ss_pred EECCCCEECCCCEECCCcEECCCCEECCCCEEee---------eEECCCCEECCCCEEe-ceEECCCCEECCCcEE
Q psy17795 390 YIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE---------SIILQGASIGNHSLVL-NSIVGRNSKVGNWSRV 455 (523)
Q Consensus 390 ~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~---------s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i 455 (523)
.|++++.|++++.|++++.||++|.|++++.|.+ ..||++|.|+.+|.|. ++.|++++.|++++.|
T Consensus 2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~~~~~ig~~~~i~~~s~v 77 (78)
T cd00208 2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHGGVKIGDNAVIGAGAVV 77 (78)
T ss_pred EECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccCCCccCCcEECCCcEECCCCEEeCCCEECCCCEECcCcEe
Confidence 5677777777777766777788888877777764 4666666666666664 4666666666665554
No 195
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.87 E-value=9.8e-09 Score=108.93 Aligned_cols=72 Identities=13% Similarity=0.183 Sum_probs=59.0
Q ss_pred eEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECC------------------
Q psy17795 384 KTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGR------------------ 445 (523)
Q Consensus 384 ~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~------------------ 445 (523)
.+...+.+.+.+.+. ++.| .++.||++|.| +++.|++|+||.+|.||++|.|.+|+|+.
T Consensus 288 ~i~~~~~~~~~a~~~-~~~~-~~~~ig~~~~i-~~~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~ 364 (429)
T PRK02862 288 PIYTRARYLPPSKLL-DATI-TESIIAEGCII-KNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGK 364 (429)
T ss_pred ceeccCCCCCCcccc-ccEE-EeCEECCCCEE-CCcEEEEEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCC
Confidence 344445566666664 5666 46899999999 89999999999999999999999999976
Q ss_pred -CCEECCCcEEcCC
Q psy17795 446 -NSKVGNWSRVEGT 458 (523)
Q Consensus 446 -~~~Ig~~~~i~~~ 458 (523)
++.||++|.|.++
T Consensus 365 ~~~~Ig~~~~i~~~ 378 (429)
T PRK02862 365 PPLGIGEGTTIKRA 378 (429)
T ss_pred cccEECCCCEEEEE
Confidence 6889999999763
No 196
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=98.87 E-value=4.1e-08 Score=92.55 Aligned_cols=108 Identities=11% Similarity=0.172 Sum_probs=65.4
Q ss_pred CcEECCCCEECCCCEE----CCCcEECCCCEECCCCEEe---eeEECCCCEECCCCEEec--------------------
Q psy17795 388 DVYIHSSASVHPTAIV----GPNVSIDDGAVIGPGVRIK---ESIILQGASIGNHSLVLN-------------------- 440 (523)
Q Consensus 388 ~~~i~~~~~I~~~~~I----~~~~~Ig~~~~I~~~~~I~---~s~Ig~~~~Ig~~~~I~~-------------------- 440 (523)
+..+++++.++.++.+ .+.+.||++|.|++++.|. .+.||++|.|++++.|.+
T Consensus 43 ~I~iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~~ 122 (192)
T PRK09677 43 SINFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPPD 122 (192)
T ss_pred eEEECCceEECCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccChh
Confidence 3445555555555554 3567777777887777775 478888888888887752
Q ss_pred --------eEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCCcE
Q psy17795 441 --------SIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKE 512 (523)
Q Consensus 441 --------~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~ 512 (523)
+.||++|.||.++.|.+ .++|+++++|++++++. + .|++++++.+. |.+.
T Consensus 123 ~~~~~~~~v~Ig~~~~ig~~~~i~~----------g~~Ig~~~~Iga~s~v~-------~--~i~~~~~~~G~---Pa~~ 180 (192)
T PRK09677 123 MRTLESSAVVIGQRVWIGENVTILP----------GVSIGNGCIVGANSVVT-------K--SIPENTVIAGN---PAKI 180 (192)
T ss_pred hcccccCCeEEcCCcEECCCCEEcC----------CCEECCCCEECCCCEEC-------c--ccCCCcEEEec---CCEE
Confidence 45667777776666654 25566665555554332 2 14555555332 5555
Q ss_pred eCCCC
Q psy17795 513 LTRSF 517 (523)
Q Consensus 513 i~~~~ 517 (523)
+++--
T Consensus 181 ik~~~ 185 (192)
T PRK09677 181 IKKYN 185 (192)
T ss_pred EeccC
Confidence 55443
No 197
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=98.87 E-value=1.6e-08 Score=92.65 Aligned_cols=41 Identities=15% Similarity=0.276 Sum_probs=22.7
Q ss_pred cCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCCcEe
Q psy17795 471 MDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKEL 513 (523)
Q Consensus 471 I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i 513 (523)
|+++|+||+++.|..+ ++||++|.||++++|... |.+++++
T Consensus 116 Ig~~v~Ig~~a~I~~~-v~IG~~~~Iga~s~V~~d-vp~~~~~ 156 (162)
T TIGR01172 116 VGEGVMIGAGAKVLGN-IEVGENAKIGANSVVLKD-VPPGATV 156 (162)
T ss_pred ECCCcEEcCCCEEECC-cEECCCCEECCCCEECCC-CCCCCEE
Confidence 3333333334444334 667888888888877443 4444444
No 198
>PRK10191 putative acyl transferase; Provisional
Probab=98.86 E-value=2.4e-08 Score=89.32 Aligned_cols=74 Identities=26% Similarity=0.370 Sum_probs=35.8
Q ss_pred CceEecCcEECCCCEECC--CCEECCCcEECCCCEECCCCEEee--------eEECCCCEECCCCEEe-ceEECCCCEEC
Q psy17795 382 QCKTIGDVYIHSSASVHP--TAIVGPNVSIDDGAVIGPGVRIKE--------SIILQGASIGNHSLVL-NSIVGRNSKVG 450 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~~--~~~I~~~~~Ig~~~~I~~~~~I~~--------s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig 450 (523)
+..|.+.+.|++++.|++ ++.|++++.||++|.|+++++|++ +.||++|.||.++.|. ++.||+++.||
T Consensus 41 g~~I~~~a~Ig~~~~I~~g~~i~I~~~~~IGd~~~I~h~v~IG~~~~~~~~~~~IGd~~~Ig~~~~I~~~v~IG~~~~Ig 120 (146)
T PRK10191 41 GYEIQAAATIGRRFTIHHGYAVVINKNVVAGDDFTIRHGVTIGNRGADNMACPHIGNGVELGANVIILGDITIGNNVTVG 120 (146)
T ss_pred CcccCCCCEECCCeEECCCCeEEECCCcEECCCCEECCCCEECCCCcCCCCCCEECCCcEEcCCCEEeCCCEECCCCEEC
Confidence 344555556666666665 344455555555555554444432 2444444444444443 34444444444
Q ss_pred CCcEE
Q psy17795 451 NWSRV 455 (523)
Q Consensus 451 ~~~~i 455 (523)
+++.+
T Consensus 121 ags~V 125 (146)
T PRK10191 121 AGSVV 125 (146)
T ss_pred CCCEE
Confidence 44444
No 199
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=98.85 E-value=2.4e-08 Score=89.89 Aligned_cols=61 Identities=26% Similarity=0.382 Sum_probs=55.3
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHh
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLD 162 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~ 162 (523)
|.+||+||| +|+||.- .-|||++++|+|||.|+++.+.+ .+++|++++..+...+++|+.+
T Consensus 1 m~~iiMAGG--rGtRmg~----~EKPlleV~GkpLI~~v~~al~~--~~d~i~v~isp~tp~t~~~~~~ 61 (177)
T COG2266 1 MMAIIMAGG--RGTRMGR----PEKPLLEVCGKPLIDRVLEALRK--IVDEIIVAISPHTPKTKEYLES 61 (177)
T ss_pred CceEEecCC--cccccCC----CcCcchhhCCccHHHHHHHHHHh--hcCcEEEEeCCCCHhHHHHHHh
Confidence 468999999 9999982 26999999999999999999997 5899999999988899999987
No 200
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=1.6e-08 Score=104.44 Aligned_cols=99 Identities=27% Similarity=0.362 Sum_probs=76.5
Q ss_pred ECCCCEECCCcEECCCCEECCCCEEee-eEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCC
Q psy17795 397 VHPTAIVGPNVSIDDGAVIGPGVRIKE-SIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPP 475 (523)
Q Consensus 397 I~~~~~I~~~~~Ig~~~~I~~~~~I~~-s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~ 475 (523)
+.. +.|.++++||++|.|++++.|+. ++||++|.||+++.|.+|+|+++|.|++++.|.++ .|+++|
T Consensus 253 ~~~-~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~s-----------Ii~~~~ 320 (358)
T COG1208 253 IRS-AYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDS-----------IIGENC 320 (358)
T ss_pred ccc-ceEeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEeee-----------EEcCCc
Confidence 444 66778888888888888888865 88999999999999999999999999999999874 566777
Q ss_pred eecCCCeecCCcEEeCCCCEECCCcEE-eCeEEcCCcEeCC
Q psy17795 476 LFNSNGKLNPSITILGDGVTVPGELIV-LNSIVLPYKELTR 515 (523)
Q Consensus 476 ~ig~~~~i~~g~~iIG~~~~Ig~~~~i-~~~~v~~~~~i~~ 515 (523)
.||. . . .+|+ +.+|.++.+ .+.++++++.+..
T Consensus 321 ~ig~-~-----~-~i~d-~~~g~~~~i~~g~~~~~~~~~~~ 353 (358)
T COG1208 321 KIGA-S-----L-IIGD-VVIGINSEILPGVVVGPGSVVES 353 (358)
T ss_pred EECC-c-----e-eecc-eEecCceEEcCceEeCCCccccC
Confidence 7776 1 1 2677 777777777 5555555555543
No 201
>PLN02739 serine acetyltransferase
Probab=98.80 E-value=3.4e-08 Score=98.86 Aligned_cols=84 Identities=14% Similarity=0.227 Sum_probs=45.7
Q ss_pred CceEecCcEECCCCEECC--CCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCC
Q psy17795 382 QCKTIGDVYIHSSASVHP--TAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTP 459 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~~--~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~ 459 (523)
+..|++.+.||+++.|++ +++|+++++||++|.|..+++|+.+ +...+. .+++||++|.||.|+.|.+
T Consensus 205 GidI~p~A~IG~Gv~IdHg~GVVIG~~avIGdnv~I~~gVTIGg~----g~~~g~----r~p~IGd~V~IGagA~IlG-- 274 (355)
T PLN02739 205 GIDIHPAARIGKGILLDHGTGVVIGETAVIGDRVSILHGVTLGGT----GKETGD----RHPKIGDGALLGACVTILG-- 274 (355)
T ss_pred CcccCCCccccCceEEecCCceEECCCCEECCCCEEcCCceeCCc----CCcCCC----CCcEECCCCEEcCCCEEeC--
Confidence 455666666666666654 4555555555555555555555321 000000 1356667777777776654
Q ss_pred CCCCCCCCceecCCCCeecCCCee
Q psy17795 460 CDPNPNKAFAKMDNPPLFNSNGKL 483 (523)
Q Consensus 460 ~~~~~~~~~v~I~~~~~ig~~~~i 483 (523)
+++||+++.||++++|
T Consensus 275 --------~V~IGd~aiIGAGSVV 290 (355)
T PLN02739 275 --------NISIGAGAMVAAGSLV 290 (355)
T ss_pred --------CeEECCCCEECCCCEE
Confidence 3566666666666543
No 202
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.79 E-value=4e-08 Score=77.82 Aligned_cols=34 Identities=12% Similarity=0.207 Sum_probs=22.1
Q ss_pred ceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE
Q psy17795 468 FAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV 502 (523)
Q Consensus 468 ~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i 502 (523)
.+.|+++++++.++.+.++ +.||+++.|+++++|
T Consensus 44 ~~~ig~~~~v~~~~~i~~~-~~ig~~~~i~~~s~v 77 (78)
T cd00208 44 PTIIGDNVEIGANAVIHGG-VKIGDNAVIGAGAVV 77 (78)
T ss_pred CcEECCCcEECCCCEEeCC-CEECCCCEECcCcEe
Confidence 3555666666656655555 667888888877765
No 203
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=98.79 E-value=6.9e-08 Score=90.80 Aligned_cols=51 Identities=12% Similarity=0.158 Sum_probs=45.9
Q ss_pred eEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCCh
Q psy17795 95 TTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPS 153 (523)
Q Consensus 95 ~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~ 153 (523)
.+|||||| +|+||+. ||+|++++|+|||+|+++.+.+. ++++++||+++..
T Consensus 2 ~~vILAgG--~s~Rmg~-----~K~ll~~~g~~ll~~~i~~~~~~-~~~~i~vv~~~~~ 52 (190)
T TIGR03202 2 VAIYLAAG--QSRRMGE-----NKLALPLGETTLGSASLKTALSS-RLSKVIVVIGEKY 52 (190)
T ss_pred eEEEEcCC--ccccCCC-----CceeceeCCccHHHHHHHHHHhC-CCCcEEEEeCCcc
Confidence 48999999 9999987 89999999999999999888774 8999999998754
No 204
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=98.78 E-value=5.7e-08 Score=94.96 Aligned_cols=90 Identities=13% Similarity=0.226 Sum_probs=60.0
Q ss_pred CceEecCcEECCCCEECCCCEECCCc-EECCCCEECCCCEEee-eEECCCCEECCCCEEec---------eEECCCCEEC
Q psy17795 382 QCKTIGDVYIHSSASVHPTAIVGPNV-SIDDGAVIGPGVRIKE-SIILQGASIGNHSLVLN---------SIVGRNSKVG 450 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~~~~~I~~~~-~Ig~~~~I~~~~~I~~-s~Ig~~~~Ig~~~~I~~---------~iIg~~~~Ig 450 (523)
++.+.-.++|++++.|.+.+.|..++ +||+. .| ++.|.+ ++||++|.|+.++.|.+ +.||++|.||
T Consensus 159 ~~rVRlGAyLGeGtvVm~~a~VN~nAgtIG~~-iI--~g~I~HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~IGe~~~IG 235 (319)
T TIGR03535 159 ADRVRLGAHLAEGTTVMHEGFVNFNAGTLGAS-MV--EGRISAGVVVGDGSDIGGGASIMGTLSGGGKEVISIGERCLLG 235 (319)
T ss_pred CceeeeccEECCCCEEcCCCEEccCceEecCc-eE--EEEEccCCEECCCCEECCCceecceecCCCcccEEECCCcEEC
Confidence 34445555666666666666665565 46654 44 345533 67777777777777543 7888888888
Q ss_pred CCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCC
Q psy17795 451 NWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPS 486 (523)
Q Consensus 451 ~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g 486 (523)
.+|.| + +.||++|.||++++|..|
T Consensus 236 agA~I-G-----------I~IGd~~VVGAGaVVtkg 259 (319)
T TIGR03535 236 ANSGL-G-----------ISLGDDCVVEAGLYVTAG 259 (319)
T ss_pred CCCEE-C-----------eEECCCCEECCCCEEeCC
Confidence 88888 4 578888877777776666
No 205
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=98.77 E-value=2.9e-08 Score=100.50 Aligned_cols=74 Identities=18% Similarity=0.284 Sum_probs=65.0
Q ss_pred CceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCC
Q psy17795 382 QCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGT 458 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~ 458 (523)
+-.|...+..-|.+.+..++.+ .++.|+.||+|.. .|.+|+|+.++.|+.+|.|++|+|+.+|.||++|.|...
T Consensus 273 ~w~IyT~~~~~pPak~~~~s~v-~nSLv~~GciI~G--~V~nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~~a 346 (393)
T COG0448 273 NWPIYTKNKNLPPAKFVNDSEV-SNSLVAGGCIISG--TVENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRRA 346 (393)
T ss_pred CCceeecCCCCCCceEecCceE-eeeeeeCCeEEEe--EEEeeEEecCeEECCCCEEEeeEEeCCcEECCCCEEEEE
Confidence 4456666667778888888877 8999999999975 999999999999999999999999999999999999863
No 206
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=98.77 E-value=1.1e-08 Score=101.27 Aligned_cols=81 Identities=21% Similarity=0.220 Sum_probs=60.9
Q ss_pred EEEEecCCCCCCcCCCCCCCCCcccceeC---CcchHHHHHHHHhcC-------CCccEEEEEccCChHHHHHHHHhhhh
Q psy17795 96 TNDTTPGPLKGTRFRPLSLDSPKPLFPVA---GLPMIQHHIEACVQV-------PNLKEIIILGYYPSADLQKFVLDMVQ 165 (523)
Q Consensus 96 ~iila~g~g~g~R~~~lT~~~pK~ll~i~---g~pli~~~l~~~~~~-------~g~~~i~vv~~~~~~~i~~~l~~~~~ 165 (523)
+|+|||| .||||+- ..||+|+||+ |+|+|++.++++..+ .++..+++...+..+++++||++...
T Consensus 3 ~viLaGG--~GtRLg~---~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~~ 77 (266)
T cd04180 3 VVLLAGG--LGTRLGK---DGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKINQ 77 (266)
T ss_pred EEEECCC--CccccCC---CCCceeeeecCCCCCcHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcCC
Confidence 7899999 9999964 8999999999 999999999999752 35667777777788899999998431
Q ss_pred ccCeeEEEEecccccc
Q psy17795 166 EYKINIRYLQEFWDII 181 (523)
Q Consensus 166 ~~~~~i~~~~~~~~~g 181 (523)
..+.-+.|.++..|..
T Consensus 78 ~~~~v~~f~Q~~~P~~ 93 (266)
T cd04180 78 KNSYVITFMQGKLPLK 93 (266)
T ss_pred CCCceEEEEeCCceEE
Confidence 2232233444445544
No 207
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=98.77 E-value=7.6e-08 Score=90.76 Aligned_cols=55 Identities=29% Similarity=0.306 Sum_probs=48.5
Q ss_pred ccceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCCh
Q psy17795 91 SCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPS 153 (523)
Q Consensus 91 ~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~ 153 (523)
||.|.+|||||| .|+||+ ..||+|++++|+|||+|+++.+. +++++|+|+++...
T Consensus 1 ~~~~~~vILA~G--~s~Rm~----~~~K~ll~~~g~~ll~~~i~~l~--~~~~~i~vv~~~~~ 55 (193)
T PRK00317 1 MPPITGVILAGG--RSRRMG----GVDKGLQELNGKPLIQHVIERLA--PQVDEIVINANRNL 55 (193)
T ss_pred CCCceEEEEcCC--CcccCC----CCCCceeEECCEEHHHHHHHHHh--hhCCEEEEECCCCh
Confidence 577899999999 999995 25899999999999999999998 37999999987643
No 208
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.76 E-value=3.3e-08 Score=104.32 Aligned_cols=54 Identities=15% Similarity=0.320 Sum_probs=50.7
Q ss_pred ECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcC
Q psy17795 403 VGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEG 457 (523)
Q Consensus 403 I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~ 457 (523)
+.++++||++|.|+ ++.|.+|+||++|.|+++|+|.+|+|+++|.||++|.|.+
T Consensus 312 ~~~~~~ig~~~~I~-~~~i~~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~ 365 (407)
T PRK00844 312 SAQDSLVSAGSIIS-GATVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRR 365 (407)
T ss_pred eEEeCEEcCCCEEC-CeeeEcCEECCCCEECCCCEEeeeEECCCCEECCCCEEEe
Confidence 34679999999998 9999999999999999999999999999999999999976
No 209
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=98.76 E-value=3.9e-08 Score=94.19 Aligned_cols=96 Identities=15% Similarity=0.184 Sum_probs=74.4
Q ss_pred CCceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEee-eEECCCCEECCCCEEe---------ceEECCCCEEC
Q psy17795 381 SQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE-SIILQGASIGNHSLVL---------NSIVGRNSKVG 450 (523)
Q Consensus 381 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~-s~Ig~~~~Ig~~~~I~---------~~iIg~~~~Ig 450 (523)
|++.+.-.++|+++++|.+.+.|.=++.++++|.|..+++++. .+||+||.||.++.|. -++|++||.||
T Consensus 113 p~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GVLep~~a~Pv~IgdncliG 192 (271)
T COG2171 113 PGAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLEPLQANPVIIGDNCLIG 192 (271)
T ss_pred CccEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeEEecCCCCCCeEECCccEec
Confidence 5778888888888888888888877888999999998888875 6899999999999995 47899999999
Q ss_pred CCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCC
Q psy17795 451 NWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPS 486 (523)
Q Consensus 451 ~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g 486 (523)
+++.+.- .+.+|++|.|+++.+|.++
T Consensus 193 Ans~~ve----------GV~vGdg~VV~aGv~I~~~ 218 (271)
T COG2171 193 ANSEVVE----------GVIVGDGCVVAAGVFITQD 218 (271)
T ss_pred cccceEe----------eeEeCCCcEEecceEEeCC
Confidence 9985532 2556666555554444443
No 210
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=98.75 E-value=5.2e-08 Score=89.26 Aligned_cols=37 Identities=16% Similarity=0.242 Sum_probs=24.6
Q ss_pred ceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCC
Q psy17795 440 NSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPS 486 (523)
Q Consensus 440 ~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g 486 (523)
.++||++|.||++|.|.+ .++||+++.||++++|.++
T Consensus 113 ~~~Ig~~v~Ig~~a~I~~----------~v~IG~~~~Iga~s~V~~d 149 (162)
T TIGR01172 113 HPTVGEGVMIGAGAKVLG----------NIEVGENAKIGANSVVLKD 149 (162)
T ss_pred CCEECCCcEEcCCCEEEC----------CcEECCCCEECCCCEECCC
Confidence 467777777777777765 3567777777777654443
No 211
>KOG3121|consensus
Probab=98.74 E-value=1.5e-08 Score=86.90 Aligned_cols=68 Identities=18% Similarity=0.196 Sum_probs=47.2
Q ss_pred EECCCCEECCCCEEC---CCcEECCCCEECCCCEEee-------------eEECCCCEECCCCEEeceEECCCCEECCCc
Q psy17795 390 YIHSSASVHPTAIVG---PNVSIDDGAVIGPGVRIKE-------------SIILQGASIGNHSLVLNSIVGRNSKVGNWS 453 (523)
Q Consensus 390 ~i~~~~~I~~~~~I~---~~~~Ig~~~~I~~~~~I~~-------------s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~ 453 (523)
.+...+.|.++++|. .++.||..|+++++++|+. ..||+.+.|++.|++..+.||..+.+|.++
T Consensus 35 ~lnGKtIv~~g~iIRGDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAAqIgsyVh~Gkna 114 (184)
T KOG3121|consen 35 LLNGKTIVEEGVIIRGDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAAQIGSYVHLGKNA 114 (184)
T ss_pred EEcCcEEEeeCcEEecccccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeehhhheeeeEeccce
Confidence 334444455555554 5788888888888888875 467777777777777777777777777766
Q ss_pred EEcC
Q psy17795 454 RVEG 457 (523)
Q Consensus 454 ~i~~ 457 (523)
+|+.
T Consensus 115 viGr 118 (184)
T KOG3121|consen 115 VIGR 118 (184)
T ss_pred eEcC
Confidence 6654
No 212
>PLN02357 serine acetyltransferase
Probab=98.74 E-value=7.1e-08 Score=97.41 Aligned_cols=77 Identities=27% Similarity=0.321 Sum_probs=64.3
Q ss_pred CCceEecCcEECC--CCEECCCCEECCCcEECCCCEECCCC---EEeeeEECCCCEECCCCEEe-ceEECCCCEECCCcE
Q psy17795 381 SQCKTIGDVYIHS--SASVHPTAIVGPNVSIDDGAVIGPGV---RIKESIILQGASIGNHSLVL-NSIVGRNSKVGNWSR 454 (523)
Q Consensus 381 ~~~~i~~~~~i~~--~~~I~~~~~I~~~~~Ig~~~~I~~~~---~I~~s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~ 454 (523)
+++.|+.+++|.. +++|+++++||+++.|+.+|+||... ..++++||++|.||.++.|. ++.||+++.||++++
T Consensus 231 p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~g~~~g~~~piIGd~V~IGagA~IlggV~IGdga~IGAgSV 310 (360)
T PLN02357 231 PGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGTGKQSGDRHPKIGDGVLIGAGTCILGNITIGEGAKIGAGSV 310 (360)
T ss_pred CCCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCccccCCccCceeCCCeEECCceEEECCeEECCCCEECCCCE
Confidence 6888999888886 68899999999999999999997532 13458899999999998885 889999999999998
Q ss_pred EcC
Q psy17795 455 VEG 457 (523)
Q Consensus 455 i~~ 457 (523)
|..
T Consensus 311 V~~ 313 (360)
T PLN02357 311 VLK 313 (360)
T ss_pred ECc
Confidence 865
No 213
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=98.73 E-value=9.7e-08 Score=88.94 Aligned_cols=52 Identities=23% Similarity=0.357 Sum_probs=46.6
Q ss_pred eEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHH
Q psy17795 95 TTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSAD 155 (523)
Q Consensus 95 ~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~ 155 (523)
.+|||||| .|+||++ ||+|++++|+|||+|+++.+.+. +++|+|++++....
T Consensus 2 ~~iILAgG--~s~Rmg~-----~K~ll~~~g~~ll~~~i~~l~~~--~~~iivv~~~~~~~ 53 (181)
T cd02503 2 TGVILAGG--KSRRMGG-----DKALLELGGKPLLEHVLERLKPL--VDEVVISANRDQER 53 (181)
T ss_pred cEEEECCC--ccccCCC-----CceeeEECCEEHHHHHHHHHHhh--cCEEEEECCCChHH
Confidence 58999999 9999986 99999999999999999999974 88999999876533
No 214
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=98.71 E-value=3.3e-07 Score=92.98 Aligned_cols=192 Identities=16% Similarity=0.163 Sum_probs=115.9
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCcccceeC---CcchHHHHHHHHhcCC-----------CccEEEEEcc-CChHHHH
Q psy17795 93 GWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVA---GLPMIQHHIEACVQVP-----------NLKEIIILGY-YPSADLQ 157 (523)
Q Consensus 93 ~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~---g~pli~~~l~~~~~~~-----------g~~~i~vv~~-~~~~~i~ 157 (523)
++.+|||||| +||||. ...||+|+|++ |+|++++.++.+.... .+. ++|.++ +..++++
T Consensus 15 ~va~viLaGG--~GTRLg---~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip-~~imtS~~t~~~t~ 88 (323)
T cd04193 15 KVAVLLLAGG--QGTRLG---FDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIP-WYIMTSEATHEETR 88 (323)
T ss_pred CEEEEEECCC--cccccC---CCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCce-EEEEcChhHhHHHH
Confidence 4568999999 999994 58999999998 6999999999998641 233 446666 6778999
Q ss_pred HHHHhhhhccCe---eEEEEeccc-cc-c-hhhhhc--cccccccc-CCCchhHHH-------Hhhc-ccCCcceEEEEc
Q psy17795 158 KFVLDMVQEYKI---NIRYLQEFW-DI-I-HQQICI--SLYWTWYR-NTRSTYGIY-------RNSL-HWVQEAVYFTLE 220 (523)
Q Consensus 158 ~~l~~~~~~~~~---~i~~~~~~~-~~-g-~~~~~~--~~~~~~~~-g~~ta~al~-------~~~i-~~~~d~~~Lvl~ 220 (523)
+||.+. ..+|+ ++.+..|.. |. . +.+... ...-.|+. | .++-.. .+.+ ...-++ +.+.+
T Consensus 89 ~~~~~~-~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~G--hG~i~~aL~~sG~l~~l~~~G~~y-i~v~~ 164 (323)
T cd04193 89 KFFKEN-NYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNG--NGGLYKALQTAGILEDMKKRGIKY-IHVYS 164 (323)
T ss_pred HHHHhC-CcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCC--chHHHHHHHHCChHHHHHhCCCEE-EEEEe
Confidence 999983 44565 677666532 10 0 000000 01124565 4 444433 2222 223455 55555
Q ss_pred ---c---chHH-HHHHHHhcCCcceEEEEEEeeCCCCCcceeEEEE-cCCCCcEEEEeecCCCc----------ccceee
Q psy17795 221 ---I---RSDV-VILMHSLYSMAILVTVMATEATRQQSVYYGCIVR-KQQTSEISHYVEKPSTF----------VSTLVN 282 (523)
Q Consensus 221 ---i---~~D~-l~~~h~~~~~~~~~tv~~~~~~~~~~~~~g~v~~-d~~~~~V~~~~ekp~~~----------~~~l~~ 282 (523)
+ ..|. ++-++.+.+ +++++-+.+.... ..+-|.+.. |.. -+|+++.|-|.+. ..+..+
T Consensus 165 vDN~L~~~~Dp~~lG~~~~~~--~~~~~kvv~k~~~-~ekvG~l~~~~g~-~~vvEysel~~~~~~~~~~~g~l~f~~~n 240 (323)
T cd04193 165 VDNILVKVADPVFIGFCISKG--ADVGAKVVRKRYP-TEKVGVVVLVDGK-PQVVEYSEISDELAEKRDADGELQYNAGN 240 (323)
T ss_pred cCcccccccCHHHhHHHHHcC--CceEEEEEECCCC-CCceeEEEEECCe-EEEEEeecCCHHHHhccCcCCcEecccch
Confidence 2 3565 888888888 8877766543322 245676654 432 3577777765421 112334
Q ss_pred eeEEEeeHHHHHHHHH
Q psy17795 283 CGVYLFSLDIFQNIAA 298 (523)
Q Consensus 283 ~Giyif~~~il~~l~~ 298 (523)
+.+.+|+-+.++.+.+
T Consensus 241 i~~~~fsl~fl~~~~~ 256 (323)
T cd04193 241 IANHFFSLDFLEKAAE 256 (323)
T ss_pred HhhheeCHHHHHHHHh
Confidence 4566777777665543
No 215
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.71 E-value=6e-08 Score=102.84 Aligned_cols=52 Identities=21% Similarity=0.383 Sum_probs=49.2
Q ss_pred CCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcC
Q psy17795 405 PNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEG 457 (523)
Q Consensus 405 ~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~ 457 (523)
.+++||++|+| ++|.|.+|+||++|.||++|.|.+|+|+++|.||++|.|.+
T Consensus 326 ~~s~i~~~~~i-~~~~i~~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~~ 377 (425)
T PRK00725 326 INSLVSGGCII-SGAVVRRSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLRR 377 (425)
T ss_pred EeCEEcCCcEE-cCccccCCEECCCCEECCCCEEeeeEEcCCCEECCCCEEee
Confidence 58999999999 79999999999999999999999999999999999999976
No 216
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.69 E-value=1.9e-07 Score=86.23 Aligned_cols=17 Identities=18% Similarity=0.167 Sum_probs=8.7
Q ss_pred ceEECCCCEECCCcEEc
Q psy17795 440 NSIVGRNSKVGNWSRVE 456 (523)
Q Consensus 440 ~~iIg~~~~Ig~~~~i~ 456 (523)
.+.||++|.||.+|.|.
T Consensus 118 ~v~IG~~~~Ig~~a~I~ 134 (169)
T cd03357 118 PITIGDNVWIGGGVIIL 134 (169)
T ss_pred CcEeCCCEEECCCCEEe
Confidence 44555555555555553
No 217
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=98.69 E-value=8.6e-08 Score=99.51 Aligned_cols=75 Identities=19% Similarity=0.328 Sum_probs=60.2
Q ss_pred CceEecCcEECCCCEECCCCEECC----CcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcC
Q psy17795 382 QCKTIGDVYIHSSASVHPTAIVGP----NVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEG 457 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~~~~~I~~----~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~ 457 (523)
++.+++.+.+ +++.|+++|.|++ +++||++|.|+++|.|.+|+|++++.||++|.|.+|+||+++.|++++.|++
T Consensus 283 ~~~i~~~~~i-~~~~ig~~~~I~~~~v~~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~~ivg~~~~i~~~~~i~~ 361 (361)
T TIGR02091 283 AKFVDSDAQV-VDSLVSEGCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRNAIIDKNVRIGEGVVIGN 361 (361)
T ss_pred ceEecCCCEE-ECCEECCCCEECCCEEEccEECCCCEECCCCEEeeeEEeCCCEECCCCEEeeeEECCCCEECCCCEeCC
Confidence 3444444332 2344555555554 8999999999999999999999999999999999999999999999999863
No 218
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=98.67 E-value=1.8e-07 Score=83.89 Aligned_cols=38 Identities=18% Similarity=0.339 Sum_probs=32.6
Q ss_pred CCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeC
Q psy17795 466 KAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLN 504 (523)
Q Consensus 466 ~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~ 504 (523)
...+.||++|+||.++.+.++ +.||++|+||++++|..
T Consensus 71 ~~~~~Ig~~~~Ig~~~~i~~g-v~Ig~~~vIgags~V~~ 108 (145)
T cd03349 71 KGDVIIGNDVWIGHGATILPG-VTIGDGAVIAAGAVVTK 108 (145)
T ss_pred cCCcEECCCCEECCCCEEeCC-CEECCCCEECCCCEEcc
Confidence 356889999999999999998 77799999999999844
No 219
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=98.67 E-value=6.7e-07 Score=84.64 Aligned_cols=52 Identities=15% Similarity=0.195 Sum_probs=46.1
Q ss_pred ccceeEEEEecCCCCCCcCCCCCCCCCcccceeCC-cchHHHHHHHHhcCCCccEEEEEccC
Q psy17795 91 SCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAG-LPMIQHHIEACVQVPNLKEIIILGYY 151 (523)
Q Consensus 91 ~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g-~pli~~~l~~~~~~~g~~~i~vv~~~ 151 (523)
.+.+.+|||||| +|+||+. +|+|++++| +|+|+|+++.+.+. +++|+|++++
T Consensus 6 ~~~i~~vILAgG--~s~RmG~-----~K~ll~~~g~~~ll~~~i~~l~~~--~~~vvvv~~~ 58 (196)
T PRK00560 6 IDNIPCVILAGG--KSSRMGE-----NKALLPFGSYSSLLEYQYTRLLKL--FKKVYISTKD 58 (196)
T ss_pred ccCceEEEECCc--ccccCCC-----CceEEEeCCCCcHHHHHHHHHHHh--CCEEEEEECc
Confidence 345679999999 9999976 999999999 99999999999864 7899988875
No 220
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=98.66 E-value=1.2e-07 Score=98.75 Aligned_cols=77 Identities=21% Similarity=0.312 Sum_probs=62.5
Q ss_pred CceEecCcEECCCCEECCCCEEC---CCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCC
Q psy17795 382 QCKTIGDVYIHSSASVHPTAIVG---PNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGT 458 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~~~~~I~---~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~ 458 (523)
.+.|++++.| +++.|+++|.|+ .+++|+++|.|+++|.|.+|+|+++|.|++++.|.+|+||+++.|++++.+.+.
T Consensus 278 p~~i~~~~~i-~~~~Ig~~~~i~~~v~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~~~ii~~~~~v~~~~~~~~~ 356 (369)
T TIGR02092 278 PTYYAENSKV-ENSLVANGCIIEGKVENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLENVIIDKDVVIEPNVKIAGT 356 (369)
T ss_pred CcEEcCCCEE-EEeEEcCCCEEeeEEeCCEECCCCEECCCCEEEeeEEeCCCEECCCCEEEEEEECCCCEECCCCEeCCC
Confidence 3444444444 344555555554 578999999999999999999999999999999999999999999999999775
Q ss_pred C
Q psy17795 459 P 459 (523)
Q Consensus 459 ~ 459 (523)
.
T Consensus 357 ~ 357 (369)
T TIGR02092 357 S 357 (369)
T ss_pred C
Confidence 3
No 221
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=98.66 E-value=1.4e-07 Score=97.68 Aligned_cols=74 Identities=23% Similarity=0.449 Sum_probs=55.0
Q ss_pred CceEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCC-CEEeceEECCCCEECCCcEEcC
Q psy17795 382 QCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNH-SLVLNSIVGRNSKVGNWSRVEG 457 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~-~~I~~~iIg~~~~Ig~~~~i~~ 457 (523)
.+.|.+++.|+++|.|+ ++.|+++++||++|+|+ ++.|.+|+|++++.|+.+ +++.+++|++++.|++++.+.+
T Consensus 265 ~~~i~~~~~Ig~~~~I~-~~~i~~~~~Ig~~~~i~-~~~i~~s~i~~~~~i~~~~~~~~~~ii~~~~~i~~~~~~~~ 339 (353)
T TIGR01208 265 NSVIRGPAVIGEDCIIE-NSYIGPYTSIGEGVVIR-DAEVEHSIVLDESVIEGVQARIVDSVIGKKVRIKGNRRRPG 339 (353)
T ss_pred CCEEECCcEECCCCEEc-CcEECCCCEECCCCEEe-eeEEEeeEEcCCCEEcCCcceeecCEEcCCCEECCCccccc
Confidence 34455666666666665 44566777777777776 577778899999999887 4888899999999998888864
No 222
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=98.64 E-value=3.3e-07 Score=85.47 Aligned_cols=34 Identities=6% Similarity=-0.026 Sum_probs=15.9
Q ss_pred CCcEECCCCEECCCCEEee---eEECCCCEECCCCEE
Q psy17795 405 PNVSIDDGAVIGPGVRIKE---SIILQGASIGNHSLV 438 (523)
Q Consensus 405 ~~~~Ig~~~~I~~~~~I~~---s~Ig~~~~Ig~~~~I 438 (523)
.++.||+++.|+.+|+|.+ ..||++|.|+++|+|
T Consensus 72 ~~i~iG~~~~in~~~~i~d~~~I~IGd~v~I~~~v~i 108 (183)
T PRK10092 72 YNIFLGNNFYANFDCVMLDVCPIRIGDNCMLAPGVHI 108 (183)
T ss_pred CCcEEcCCcEECCceEEecCceEEECCCCEECCCCEE
Confidence 3444444444444443322 245555555555555
No 223
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=98.63 E-value=2.8e-07 Score=86.61 Aligned_cols=37 Identities=11% Similarity=0.272 Sum_probs=33.6
Q ss_pred CceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeC
Q psy17795 467 AFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLN 504 (523)
Q Consensus 467 ~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~ 504 (523)
+.++||+++|||++++|.+| +.||+|++||+++++..
T Consensus 123 ~~v~IG~~vwIG~~a~IlpG-V~IG~gavigagsVVtk 159 (190)
T COG0110 123 GPVTIGEDVWIGAGAVILPG-VTIGEGAVIGAGSVVTK 159 (190)
T ss_pred CCeEECCCeEEcCccEECCC-EEECCCcEEeeCCEEeC
Confidence 46899999999999999999 67799999999999944
No 224
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=98.62 E-value=2.3e-07 Score=85.12 Aligned_cols=86 Identities=13% Similarity=0.171 Sum_probs=45.8
Q ss_pred CceEecCcEECCCCEECCC--CEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCC
Q psy17795 382 QCKTIGDVYIHSSASVHPT--AIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTP 459 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~~~--~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~ 459 (523)
+..|++.+.||++.+|+.+ .+|++.+.||++|.|..+++|+.+ -. .+--.+-.||++|.||+||.|-|
T Consensus 67 gieIhp~A~IG~g~fIdHg~GvVIgeta~IGddv~I~~gVTLGgt-----g~---~~g~RhPtIg~~V~IGagAkILG-- 136 (194)
T COG1045 67 GIEIHPGAKIGRGLFIDHGTGVVIGETAVIGDDVTIYHGVTLGGT-----GK---ESGKRHPTIGNGVYIGAGAKILG-- 136 (194)
T ss_pred ceeeCCCCeECCceEEcCCceEEEcceeEECCCeEEEcceEecCC-----CC---cCCCCCCccCCCeEECCCCEEEc--
Confidence 5567777777777777654 345555555555555555555431 00 00011345566666666666654
Q ss_pred CCCCCCCCceecCCCCeecCCCeecC
Q psy17795 460 CDPNPNKAFAKMDNPPLFNSNGKLNP 485 (523)
Q Consensus 460 ~~~~~~~~~v~I~~~~~ig~~~~i~~ 485 (523)
.+.||+++.||++++|..
T Consensus 137 --------~I~IGd~akIGA~sVVlk 154 (194)
T COG1045 137 --------NIEIGDNAKIGAGSVVLK 154 (194)
T ss_pred --------ceEECCCCEECCCceEcc
Confidence 255566666665554443
No 225
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=98.61 E-value=5.4e-07 Score=84.24 Aligned_cols=51 Identities=18% Similarity=0.270 Sum_probs=44.7
Q ss_pred eEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCCh
Q psy17795 95 TTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPS 153 (523)
Q Consensus 95 ~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~ 153 (523)
.+|||||| .|+||+. .||+|++++|+|||+|+++.+.. .+++|+|++.+..
T Consensus 2 ~~iILAgG--~s~Rmg~----~~K~l~~i~g~pll~~~l~~l~~--~~~~ivv~~~~~~ 52 (186)
T TIGR02665 2 SGVILAGG--RARRMGG----RDKGLVELGGKPLIEHVLARLRP--QVSDLAISANRNP 52 (186)
T ss_pred eEEEEcCC--ccccCCC----CCCceeEECCEEHHHHHHHHHHh--hCCEEEEEcCCCH
Confidence 48999999 9999973 49999999999999999999974 6899999987643
No 226
>PLN02694 serine O-acetyltransferase
Probab=98.60 E-value=2.4e-07 Score=91.15 Aligned_cols=37 Identities=16% Similarity=0.341 Sum_probs=31.3
Q ss_pred CCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEe
Q psy17795 466 KAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVL 503 (523)
Q Consensus 466 ~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~ 503 (523)
..+.+||++++||++++|..+ ++||++|+||+|++|.
T Consensus 210 ~r~piIGd~V~IGagA~Ilgg-i~IGd~a~IGAgSVV~ 246 (294)
T PLN02694 210 DRHPKIGDGVLIGAGATILGN-VKIGEGAKIGAGSVVL 246 (294)
T ss_pred CCccEECCCeEECCeeEECCC-CEECCCCEECCCCEEC
Confidence 346788999999999999888 6779999999999884
No 227
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.59 E-value=2.9e-07 Score=77.28 Aligned_cols=76 Identities=25% Similarity=0.369 Sum_probs=50.1
Q ss_pred CceEecCcEECC--CCEECCCCEECCCcEECCCCEECCCCE---EeeeEECCCCEECCCCEEe-ceEECCCCEECCCcEE
Q psy17795 382 QCKTIGDVYIHS--SASVHPTAIVGPNVSIDDGAVIGPGVR---IKESIILQGASIGNHSLVL-NSIVGRNSKVGNWSRV 455 (523)
Q Consensus 382 ~~~i~~~~~i~~--~~~I~~~~~I~~~~~Ig~~~~I~~~~~---I~~s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i 455 (523)
.+.|+++++|+. .+.|++++.|++++.|++++.|+.++. ++.++||++|.|+.++.+. .+.||+++.|++++.|
T Consensus 8 ~~~ig~~~~i~~~~~~~ig~~~~Ig~~~~i~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i 87 (101)
T cd03354 8 GAKIGPGLFIDHGTGIVIGETAVIGDNCTIYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGNITIGDNVKIGANAVV 87 (101)
T ss_pred CCEECCCEEECCCCeEEECCCCEECCCCEEcCCCEECCCccCCcCCCCEECCCcEEcCCCEEECcCEECCCCEECCCCEE
Confidence 344444454443 334455555555555555555555553 4556799999999988887 4888888888888888
Q ss_pred cC
Q psy17795 456 EG 457 (523)
Q Consensus 456 ~~ 457 (523)
..
T Consensus 88 ~~ 89 (101)
T cd03354 88 TK 89 (101)
T ss_pred Cc
Confidence 64
No 228
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=98.58 E-value=8.3e-07 Score=75.41 Aligned_cols=84 Identities=12% Similarity=0.117 Sum_probs=41.6
Q ss_pred CcEECCCCEECCCCEEC--CCcEECCCCEECCCCEEeeeEECCCCEECCCCEE-eceEECCCCEECCCcEEcCCCCCCCC
Q psy17795 388 DVYIHSSASVHPTAIVG--PNVSIDDGAVIGPGVRIKESIILQGASIGNHSLV-LNSIVGRNSKVGNWSRVEGTPCDPNP 464 (523)
Q Consensus 388 ~~~i~~~~~I~~~~~I~--~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I-~~~iIg~~~~Ig~~~~i~~~~~~~~~ 464 (523)
+..||+++.|++++.|. +.+.||++|.|++++.|... .++........+ ..+.||++|.||.++.|..
T Consensus 3 ~i~iG~~~~I~~~~~i~~~~~i~IG~~~~I~~~~~I~~~--~h~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~------- 73 (107)
T cd05825 3 NLTIGDNSWIGEGVWIYNLAPVTIGSDACISQGAYLCTG--SHDYRSPAFPLITAPIVIGDGAWVAAEAFVGP------- 73 (107)
T ss_pred eEEECCCCEECCCCEEeeCCceEECCCCEECCCeEeecC--CCCCCcCccceecCCEEECCCCEECCCCEECC-------
Confidence 34556666666666653 45677777777777766420 000111111111 2455555555555555543
Q ss_pred CCCceecCCCCeecCCCee
Q psy17795 465 NKAFAKMDNPPLFNSNGKL 483 (523)
Q Consensus 465 ~~~~v~I~~~~~ig~~~~i 483 (523)
.++|++++.|++++.+
T Consensus 74 ---g~~Ig~~~~i~~gs~v 89 (107)
T cd05825 74 ---GVTIGEGAVVGARSVV 89 (107)
T ss_pred ---CCEECCCCEECCCCEE
Confidence 2445555555555433
No 229
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=98.56 E-value=3.5e-07 Score=84.71 Aligned_cols=51 Identities=22% Similarity=0.408 Sum_probs=47.8
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCC
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYP 152 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~ 152 (523)
.-+|||||| +|+||+. ||.|+|+.|+|++.++++...+. +++++++|+++.
T Consensus 6 v~~VvLAAG--rssRmG~-----~KlLap~~g~plv~~~~~~a~~a-~~~~vivV~g~~ 56 (199)
T COG2068 6 VAAVVLAAG--RSSRMGQ-----PKLLAPLDGKPLVRASAETALSA-GLDRVIVVTGHR 56 (199)
T ss_pred eEEEEEccc--ccccCCC-----cceecccCCCcHHHHHHHHHHhc-CCCeEEEEeCcc
Confidence 458999999 9999996 99999999999999999999985 999999999986
No 230
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=98.56 E-value=5.7e-07 Score=85.38 Aligned_cols=51 Identities=22% Similarity=0.342 Sum_probs=45.2
Q ss_pred cceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccC
Q psy17795 92 CGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYY 151 (523)
Q Consensus 92 ~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~ 151 (523)
|.+.+|||||| +|+||+. +|+|++++|+|||+|+++.+.. .+++|+|++++
T Consensus 6 ~~~~~vILAgG--~s~Rmg~-----~K~ll~~~g~~ll~~~i~~l~~--~~~~ivvv~~~ 56 (200)
T PRK02726 6 NNLVALILAGG--KSSRMGQ-----DKALLPWQGVPLLQRVARIAAA--CADEVYIITPW 56 (200)
T ss_pred CCceEEEEcCC--CcccCCC-----CceeeEECCEeHHHHHHHHHHh--hCCEEEEECCC
Confidence 45679999999 9999975 8999999999999999999985 47899998864
No 231
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=98.52 E-value=5.9e-05 Score=79.56 Aligned_cols=192 Identities=14% Similarity=0.125 Sum_probs=117.5
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCcccceeC-CcchHHHHHHHHhcC---CCcc-EEEEEccC-ChHHHHHHHHhhhhc
Q psy17795 93 GWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVA-GLPMIQHHIEACVQV---PNLK-EIIILGYY-PSADLQKFVLDMVQE 166 (523)
Q Consensus 93 ~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~-g~pli~~~l~~~~~~---~g~~-~i~vv~~~-~~~~i~~~l~~~~~~ 166 (523)
+.-+|.|||| .||||+- .-||.++++. |+++++.+++++... .|.+ ..+|.+.+ ..++..++|+++ ..
T Consensus 79 k~avlkLnGG--lGTrmG~---~~PKs~i~v~~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k~-~~ 152 (469)
T PLN02474 79 KLVVLKLNGG--LGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEKY-TN 152 (469)
T ss_pred cEEEEEecCC--cccccCC---CCCceeEEcCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHHc-CC
Confidence 3457888888 9999998 8899999995 689988888877543 2433 24566665 667899999884 33
Q ss_pred cCeeEEEEeccc-cc----chhhhh---ccccccccc-CCCchhHHH-------Hhh-cccCCcceEEEEc-----cchH
Q psy17795 167 YKINIRYLQEFW-DI----IHQQIC---ISLYWTWYR-NTRSTYGIY-------RNS-LHWVQEAVYFTLE-----IRSD 224 (523)
Q Consensus 167 ~~~~i~~~~~~~-~~----g~~~~~---~~~~~~~~~-g~~ta~al~-------~~~-i~~~~d~~~Lvl~-----i~~D 224 (523)
++.++.+..|.. |. |-..++ -.....||. | .++... .+. +...-++ +.+.| -..|
T Consensus 153 ~~~~i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~G--hGd~y~aL~~sG~Ld~l~~~G~ey-ifv~nvDNLga~vD 229 (469)
T PLN02474 153 SNIEIHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPG--HGDVFPSLMNSGKLDALLSQGKEY-VFIANSDNLGAIVD 229 (469)
T ss_pred CccceEEEecCceeeEecCCCCcccccCCCCcceeeeCC--CchHHHHHHhCChHHHHHhcCCEE-EEEEecCccccccC
Confidence 455666555421 11 000000 011234777 4 444433 222 2233456 66655 2346
Q ss_pred H-HHHHHHhcCCcceEEEEEEeeCCCCCcceeEEEE-cCCCCcEEEEeecCCC--------cccceeeeeEEEeeHHHHH
Q psy17795 225 V-VILMHSLYSMAILVTVMATEATRQQSVYYGCIVR-KQQTSEISHYVEKPST--------FVSTLVNCGVYLFSLDIFQ 294 (523)
Q Consensus 225 ~-l~~~h~~~~~~~~~tv~~~~~~~~~~~~~g~v~~-d~~~~~V~~~~ekp~~--------~~~~l~~~Giyif~~~il~ 294 (523)
. ++.++...+ +++++=+.+-...+ .+-|.+.. |.. -+|+++.+-|++ ....+.+++.+.|+-+.++
T Consensus 230 p~~lg~~~~~~--~e~~~ev~~Kt~~d-~kgG~l~~~dgk-~~lvEysqvp~e~~~~f~~~~kf~~fNtnn~w~~L~~l~ 305 (469)
T PLN02474 230 LKILNHLIQNK--NEYCMEVTPKTLAD-VKGGTLISYEGK-VQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIK 305 (469)
T ss_pred HHHHHHHHhcC--CceEEEEeecCCCC-CCccEEEEECCE-EEEEEEecCCHHHHHhhcccccceeeeeeeEEEEHHHHH
Confidence 6 888988888 88776655432222 23466553 322 358888887653 2356789999999988877
Q ss_pred HHH
Q psy17795 295 NIA 297 (523)
Q Consensus 295 ~l~ 297 (523)
.+.
T Consensus 306 ~~~ 308 (469)
T PLN02474 306 RLV 308 (469)
T ss_pred HHh
Confidence 664
No 232
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.51 E-value=9.8e-07 Score=81.85 Aligned_cols=169 Identities=13% Similarity=0.076 Sum_probs=103.7
Q ss_pred ccceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCee
Q psy17795 91 SCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKIN 170 (523)
Q Consensus 91 ~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~ 170 (523)
||+--|||+|-| -.+|. | .|-+.+++|+|||.|+++++.++.-+++|+|-+. .+.|.+.-. .+|.+
T Consensus 1 ~~~~iAiIpAR~--gSKgI-~-----~KNi~~~~gkpLi~~~I~aA~ns~~fd~VviSsD--s~~Il~~A~----~ygak 66 (228)
T COG1083 1 MMKNIAIIPARG--GSKGI-K-----NKNIRKFGGKPLIGYTIEAALNSKLFDKVVISSD--SEEILEEAK----KYGAK 66 (228)
T ss_pred CcceEEEEeccC--CCCcC-C-----ccchHHhCCcchHHHHHHHHhcCCccceEEEcCC--cHHHHHHHH----HhCcc
Confidence 355568999998 55555 4 5999999999999999999999878888887764 345544433 46777
Q ss_pred EEEEecccccchhhhhcccccccccCCCchhHHH--HhhcccCCcceEEEEc----cc--hHH--HHHHHHhcCCcceEE
Q psy17795 171 IRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIY--RNSLHWVQEAVYFTLE----IR--SDV--VILMHSLYSMAILVT 240 (523)
Q Consensus 171 i~~~~~~~~~g~~~~~~~~~~~~~~g~~ta~al~--~~~i~~~~d~~~Lvl~----i~--~D~--l~~~h~~~~~~~~~t 240 (523)
+.+.++.+...+ . |+|-++++ .+......+. ++++. +. .++ ..+.+.+.+ .+..
T Consensus 67 ~~~~Rp~~LA~D----------~---ast~~~~lh~le~~~~~~~~-~~lLq~TsPLl~~~~ik~A~e~f~~~~--~~sl 130 (228)
T COG1083 67 VFLKRPKELASD----------R---ASTIDAALHALESFNIDEDT-LILLQPTSPLLTSLHIKEAFEKFLNNQ--YDSL 130 (228)
T ss_pred ccccCChhhccC----------c---hhHHHHHHHHHHHhccccCe-eEEeccCccccchhHHHHHHHHHhcCC--Ccce
Confidence 766666554321 1 11344444 5555533343 55554 33 334 444455555 5555
Q ss_pred EEEEeeCCCCCcceeEEEEcCCCCcEEEEeecCC-------CcccceeeeeEEEeeHHHHH
Q psy17795 241 VMATEATRQQSVYYGCIVRKQQTSEISHYVEKPS-------TFVSTLVNCGVYLFSLDIFQ 294 (523)
Q Consensus 241 v~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~-------~~~~~l~~~Giyif~~~il~ 294 (523)
+.+.+... ..|-.+. +.+ |.+..+.|.|. .+.....++.+|+++.+.|.
T Consensus 131 ~sa~e~e~---~p~k~f~-~~~-~~~~~~~~~~~~~~rrQ~Lpk~Y~~NgaiYi~~~~~l~ 186 (228)
T COG1083 131 FSAVECEH---HPYKAFS-LNN-GEVKPVNEDPDFETRRQDLPKAYRENGAIYINKKDALL 186 (228)
T ss_pred EEEeeccc---chHHHHH-hcC-CceeecccCCccccccccchhhhhhcCcEEEehHHHHh
Confidence 65565532 2222222 223 67777777652 23455678899999998764
No 233
>KOG4750|consensus
Probab=98.46 E-value=5.8e-07 Score=83.36 Aligned_cols=60 Identities=17% Similarity=0.319 Sum_probs=45.4
Q ss_pred ceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE
Q psy17795 440 NSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV 502 (523)
Q Consensus 440 ~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i 502 (523)
-++||++|.|.+++.+++.. ......+-+||++++||.+++|.+++ .||+|++|++|++|
T Consensus 174 TAvvg~~vSilH~Vtlggtg--k~~gdrhP~Igd~vliGaGvtILgnV-~IGegavIaAGsvV 233 (269)
T KOG4750|consen 174 TAVVGDNVSILHPVTLGGTG--KGSGDRHPKIGDNVLIGAGVTILGNV-TIGEGAVIAAGSVV 233 (269)
T ss_pred eeEeccceeeecceeecccc--ccccccCCcccCCeEEccccEEeCCe-eECCCcEEeccceE
Confidence 45666777777777776542 22334455899999999999999994 55999999999988
No 234
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=98.45 E-value=6.8e-06 Score=87.21 Aligned_cols=190 Identities=14% Similarity=0.134 Sum_probs=113.7
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCcccceeC---CcchHHHHHHHHhcC-------------CCccEEEEEccCChHHH
Q psy17795 93 GWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVA---GLPMIQHHIEACVQV-------------PNLKEIIILGYYPSADL 156 (523)
Q Consensus 93 ~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~---g~pli~~~l~~~~~~-------------~g~~~i~vv~~~~~~~i 156 (523)
++.+|||||| .||||+. ..||+|+||+ |+|+++++++++... ..+.-+++...+..+.+
T Consensus 106 kvavViLAGG--~GTRLg~---~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~t 180 (482)
T PTZ00339 106 EVAVLILAGG--LGTRLGS---DKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQT 180 (482)
T ss_pred CeEEEEECCC--CcCcCCC---CCCCeEeeecCCCCccHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHHHH
Confidence 4779999999 9999975 8999999994 899999999999763 12444555556788899
Q ss_pred HHHHHhhhhccCe---eEEEEeccc-cc-chh-hhhc---cccccccc-CCCchhHHH-------Hhhcc-cCCcceEEE
Q psy17795 157 QKFVLDMVQEYKI---NIRYLQEFW-DI-IHQ-QICI---SLYWTWYR-NTRSTYGIY-------RNSLH-WVQEAVYFT 218 (523)
Q Consensus 157 ~~~l~~~~~~~~~---~i~~~~~~~-~~-g~~-~~~~---~~~~~~~~-g~~ta~al~-------~~~i~-~~~d~~~Lv 218 (523)
++|+.+. ..+|+ +|.+..|.. |. ... ...+ ....-|+. | .++-.. .+.+. ..-++ +.+
T Consensus 181 ~~~f~~~-~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~G--nGgiy~aL~~sG~Ld~l~~~Gi~y-i~v 256 (482)
T PTZ00339 181 RQFLEEN-NFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGG--NGDVFKALAKCSELMDIVRKGIKY-VQV 256 (482)
T ss_pred HHHHHhc-cccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCC--CcHHHHHHHHCCcHHHHHHcCCEE-EEE
Confidence 9999873 33443 355554421 11 000 0000 01124554 4 444433 22222 23455 555
Q ss_pred Ec---c---chHH-HHHHHHhcCCcc-eEEEEEEeeCCCCCcceeEEEE-cCCCCcEEEEeecCCC-----------ccc
Q psy17795 219 LE---I---RSDV-VILMHSLYSMAI-LVTVMATEATRQQSVYYGCIVR-KQQTSEISHYVEKPST-----------FVS 278 (523)
Q Consensus 219 l~---i---~~D~-l~~~h~~~~~~~-~~tv~~~~~~~~~~~~~g~v~~-d~~~~~V~~~~ekp~~-----------~~~ 278 (523)
.+ + ..|. ++-++...+ + ++.-.+.+.. ....-|.+.. |.. -.|+++.|-++. ...
T Consensus 257 ~~vDN~L~k~~DP~flG~~~~~~--~~~~~~kvvk~~--~~EkvG~~~~~~g~-~~vvEYsEi~~~~~~~~~~~~g~l~f 331 (482)
T PTZ00339 257 ISIDNILAKVLDPEFIGLASSFP--AHDVLNKCVKRE--DDESVGVFCLKDYE-WQVVEYTEINERILNNDELLTGELAF 331 (482)
T ss_pred EecCcccccccCHHHhHHHHHCC--chhheeeeecCC--CCCceeEEEEeCCc-ccEEEEeccChhhhhcccccCCeecc
Confidence 44 2 3565 788888776 5 4433333322 2245677654 322 367888774321 113
Q ss_pred ceeeeeEEEeeHHHHHHH
Q psy17795 279 TLVNCGVYLFSLDIFQNI 296 (523)
Q Consensus 279 ~l~~~Giyif~~~il~~l 296 (523)
...++..++|+-++++.+
T Consensus 332 ~~gnI~~h~fsl~fl~~~ 349 (482)
T PTZ00339 332 NYGNICSHIFSLDFLKKV 349 (482)
T ss_pred cccceEEEEEEHHHHHHH
Confidence 456889999999988765
No 235
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.44 E-value=1.2e-06 Score=74.36 Aligned_cols=74 Identities=24% Similarity=0.284 Sum_probs=54.0
Q ss_pred ceEecCcEECCCCEECC--CCEECCCcEECCCCEECCC--------------CEEeeeEECCCCEECCCCEEe-ceEECC
Q psy17795 383 CKTIGDVYIHSSASVHP--TAIVGPNVSIDDGAVIGPG--------------VRIKESIILQGASIGNHSLVL-NSIVGR 445 (523)
Q Consensus 383 ~~i~~~~~i~~~~~I~~--~~~I~~~~~Ig~~~~I~~~--------------~~I~~s~Ig~~~~Ig~~~~I~-~~iIg~ 445 (523)
..|++++.|++++.|.+ ++.|++++.|+++|.|... .....+.||++|.|++++.|. ++.|++
T Consensus 2 v~Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~ig~ 81 (109)
T cd04647 2 ISIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVILPGVTIGD 81 (109)
T ss_pred eEECCCcEECCCCEEecCCceEECCCCEECCCCEEECCCCCCCccccccccccccCCeEECCCCEECCCCEEcCCCEECC
Confidence 35777888888888877 7888888888888888653 233457777777777777763 666777
Q ss_pred CCEECCCcEEc
Q psy17795 446 NSKVGNWSRVE 456 (523)
Q Consensus 446 ~~~Ig~~~~i~ 456 (523)
++.|++++.+.
T Consensus 82 ~~~i~~~~~v~ 92 (109)
T cd04647 82 GAVVGAGSVVT 92 (109)
T ss_pred CCEECCCCEEe
Confidence 77776666664
No 236
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=98.43 E-value=1.6e-06 Score=90.08 Aligned_cols=58 Identities=17% Similarity=0.173 Sum_probs=47.8
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHH
Q psy17795 93 GWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQK 158 (523)
Q Consensus 93 ~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~ 158 (523)
++.+|||||| +|+||+ ..||+|++++|+|||+|+++.+.. .+++|+|++....+.+.+
T Consensus 5 ~i~~VILAgG--~s~Rmg----g~~K~ll~i~Gkpll~~~i~~l~~--~~~~iivvv~~~~~~~~~ 62 (366)
T PRK14489 5 QIAGVILAGG--LSRRMN----GRDKALILLGGKPLIERVVDRLRP--QFARIHLNINRDPARYQD 62 (366)
T ss_pred CceEEEEcCC--cccCCC----CCCCceeEECCeeHHHHHHHHHHh--hCCEEEEEcCCCHHHHHh
Confidence 4679999999 999995 248999999999999999999984 589999877655444443
No 237
>KOG4042|consensus
Probab=98.42 E-value=2e-07 Score=80.81 Aligned_cols=76 Identities=21% Similarity=0.190 Sum_probs=63.4
Q ss_pred CceEecCcEECCCCEECCCCEEC---CCcEECCCCEECCCCEEee--------------eEECCCCEECCCCEEeceEEC
Q psy17795 382 QCKTIGDVYIHSSASVHPTAIVG---PNVSIDDGAVIGPGVRIKE--------------SIILQGASIGNHSLVLNSIVG 444 (523)
Q Consensus 382 ~~~i~~~~~i~~~~~I~~~~~I~---~~~~Ig~~~~I~~~~~I~~--------------s~Ig~~~~Ig~~~~I~~~iIg 444 (523)
.+.|.+.+.|+++|+|+|.+++- ++.+||+|+.|.+.++|.+ .+||.+....-+|..+...+|
T Consensus 20 Es~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFeVgc~s~A~kvG 99 (190)
T KOG4042|consen 20 ESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFEVGCKSSAKKVG 99 (190)
T ss_pred ecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEEeechhhhhhhc
Confidence 35678999999999999999874 7899999999999999865 578888888778877777888
Q ss_pred CCCEECCCcEEcC
Q psy17795 445 RNSKVGNWSRVEG 457 (523)
Q Consensus 445 ~~~~Ig~~~~i~~ 457 (523)
++..|+..|.++.
T Consensus 100 d~NVieskayvg~ 112 (190)
T KOG4042|consen 100 DRNVIESKAYVGD 112 (190)
T ss_pred CcceEeeeeEecC
Confidence 8888887777765
No 238
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=98.31 E-value=4.5e-06 Score=74.90 Aligned_cols=58 Identities=17% Similarity=0.247 Sum_probs=34.2
Q ss_pred eceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEeCCCCEECCCcEEeCeEEcCCcEeCCCCC
Q psy17795 439 LNSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKELTRSFK 518 (523)
Q Consensus 439 ~~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~~v~~~~~i~~~~~ 518 (523)
.+++||++|.||.+|.|.. .++|++++.||++++|.+ + +++++++.+. |.+.++...+
T Consensus 72 ~~~~Ig~~~~Ig~~~~i~~----------gv~Ig~~~vIgags~V~~-------~--v~~~~v~~G~---Pa~~i~~~~~ 129 (145)
T cd03349 72 GDVIIGNDVWIGHGATILP----------GVTIGDGAVIAAGAVVTK-------D--VPPYAIVGGN---PAKVIRYRFD 129 (145)
T ss_pred CCcEECCCCEECCCCEEeC----------CCEECCCCEECCCCEEcc-------c--cCCCeEEEec---CCEeehhhCC
Confidence 3678888888888888854 255666666655553322 1 4555555332 5555655544
No 239
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=98.27 E-value=5.7e-06 Score=77.73 Aligned_cols=52 Identities=25% Similarity=0.336 Sum_probs=43.1
Q ss_pred ccceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCC
Q psy17795 91 SCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYP 152 (523)
Q Consensus 91 ~~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~ 152 (523)
++.|.+|||||| +|+|| . +|+|++++|+||++|+++.|... ++.++|+....
T Consensus 2 ~~~~~~vILAGG--~srRm-~-----dK~l~~~~g~~lie~v~~~L~~~--~~~vvi~~~~~ 53 (192)
T COG0746 2 MTPMTGVILAGG--KSRRM-R-----DKALLPLNGRPLIEHVIDRLRPQ--VDVVVISANRN 53 (192)
T ss_pred CCCceEEEecCC--ccccc-c-----ccccceeCCeEHHHHHHHHhccc--CCEEEEeCCCc
Confidence 356789999999 99999 5 89999999999999999999965 45555555443
No 240
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=98.27 E-value=8.3e-06 Score=79.25 Aligned_cols=59 Identities=22% Similarity=0.311 Sum_probs=49.4
Q ss_pred EEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCCh--HHHHHHHHh
Q psy17795 96 TNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPS--ADLQKFVLD 162 (523)
Q Consensus 96 ~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~--~~i~~~l~~ 162 (523)
|||||+| .++|| + +|+|++++|+|||+|+++.+.+...+++++|+++... +.+.+++..
T Consensus 2 aiIlA~G--~S~R~-~-----~K~ll~l~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~ 62 (233)
T cd02518 2 AIIQARM--GSTRL-P-----GKVLKPLGGKPLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKK 62 (233)
T ss_pred EEEeeCC--CCCCC-C-----CCcccccCCccHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHH
Confidence 7999999 99999 4 5999999999999999999998623899999998754 566666543
No 241
>KOG1460|consensus
Probab=98.26 E-value=1.9e-06 Score=83.33 Aligned_cols=57 Identities=23% Similarity=0.307 Sum_probs=39.1
Q ss_pred EECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcC
Q psy17795 390 YIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEG 457 (523)
Q Consensus 390 ~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~ 457 (523)
+|-.+++|+|++++.+.+.||+|+.|| .+++||+++.|..|||-++|.|.+++.+-+
T Consensus 284 ~IigdVyIhPsakvhptAkiGPNVSIg-----------a~vrvg~GvRl~~sIIl~d~ei~enavVl~ 340 (407)
T KOG1460|consen 284 EIIGDVYIHPSAKVHPTAKIGPNVSIG-----------ANVRVGPGVRLRESIILDDAEIEENAVVLH 340 (407)
T ss_pred eEEeeeEEcCcceeCCccccCCCceec-----------CCceecCCceeeeeeeccCcEeeccceEEe
Confidence 344455555555555555554444444 566788889999999999999999988876
No 242
>KOG3121|consensus
Probab=98.12 E-value=5.3e-06 Score=71.53 Aligned_cols=96 Identities=14% Similarity=0.242 Sum_probs=58.6
Q ss_pred EECCCCEECCCCEEe----eeEECCCCEECCCCEEe-------------ceEECCCCEECCCcEEcCCCCCCCCCCCcee
Q psy17795 408 SIDDGAVIGPGVRIK----ESIILQGASIGNHSLVL-------------NSIVGRNSKVGNWSRVEGTPCDPNPNKAFAK 470 (523)
Q Consensus 408 ~Ig~~~~I~~~~~I~----~s~Ig~~~~Ig~~~~I~-------------~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~ 470 (523)
.+...++|.++++|+ ++.+|..|+++++|.|. ...||+++.|+++|++... .
T Consensus 35 ~lnGKtIv~~g~iIRGDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAA-----------q 103 (184)
T KOG3121|consen 35 LLNGKTIVEEGVIIRGDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAA-----------Q 103 (184)
T ss_pred EEcCcEEEeeCcEEecccccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeehh-----------h
Confidence 444444445555553 26677778888777774 4689999999999999764 3
Q ss_pred cCCCCeecCCCeecCCcEEeCCCCEECCCcEE-eCeEEcCCcEeCC
Q psy17795 471 MDNPPLFNSNGKLNPSITILGDGVTVPGELIV-LNSIVLPYKELTR 515 (523)
Q Consensus 471 I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-~~~~v~~~~~i~~ 515 (523)
|+..+.+|.+++|..+ |++-+-|.|.+++++ +...+.|+.+++.
T Consensus 104 IgsyVh~GknaviGrr-CVlkdCc~ild~tVlPpet~vppy~~~~g 148 (184)
T KOG3121|consen 104 IGSYVHLGKNAVIGRR-CVLKDCCRILDDTVLPPETLVPPYSTIGG 148 (184)
T ss_pred heeeeEeccceeEcCc-eEhhhheeccCCcccCcccccCCceEEcC
Confidence 3444444444444444 555555556666666 4455555555543
No 243
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=98.06 E-value=1.6e-05 Score=89.07 Aligned_cols=30 Identities=17% Similarity=0.315 Sum_probs=14.3
Q ss_pred CCCCeecCCCeecCCcEEeCCCCEECCCcEE
Q psy17795 472 DNPPLFNSNGKLNPSITILGDGVTVPGELIV 502 (523)
Q Consensus 472 ~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i 502 (523)
|++|+||++++|.+| ++||++|+|++++.+
T Consensus 164 G~~~~IG~~s~I~~g-~~Igd~a~vgagS~V 193 (695)
T TIGR02353 164 GRDAFIGTRSTLDID-TSIGDGAQLGHGSAL 193 (695)
T ss_pred CCCcEECCCCEEcCC-CEECCCCEECCCCEe
Confidence 333333333333333 445666666666655
No 244
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=98.01 E-value=2.4e-05 Score=87.60 Aligned_cols=45 Identities=9% Similarity=0.142 Sum_probs=32.4
Q ss_pred ceecCCCCeecCCCeecCCcEEeCCCCEECCCcEE-eCeEEcCCcEe
Q psy17795 468 FAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIV-LNSIVLPYKEL 513 (523)
Q Consensus 468 ~v~I~~~~~ig~~~~i~~g~~iIG~~~~Ig~~~~i-~~~~v~~~~~i 513 (523)
.++||++|+||.+++|.+| +.||++|.||+++++ .+..+.++++.
T Consensus 645 ~v~IG~~~~IG~~a~V~~g-~~IGd~a~Ig~~SvV~~g~~vp~~s~~ 690 (695)
T TIGR02353 645 TVTIGDGATLGPGAIVLYG-VVMGEGSVLGPDSLVMKGEEVPAHTRW 690 (695)
T ss_pred CeEECCCCEECCCCEECCC-CEECCCCEECCCCEEcCCcccCCCCEE
Confidence 4666667777777777777 677999999998888 55566666544
No 245
>KOG1322|consensus
Probab=97.97 E-value=8.5e-06 Score=80.18 Aligned_cols=88 Identities=15% Similarity=0.168 Sum_probs=54.2
Q ss_pred CEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCCCCCCCceecCCC
Q psy17795 395 ASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNP 474 (523)
Q Consensus 395 ~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~ 474 (523)
+.|..++.+.+-+.+|++|.||++ ++||.+|.|++++.|.+|.|..++.++.++.|..+.
T Consensus 259 ~~i~~nvlvd~~~~iG~~C~Ig~~-----vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~i--------------- 318 (371)
T KOG1322|consen 259 SKIVGNVLVDSIASIGENCSIGPN-----VVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSI--------------- 318 (371)
T ss_pred ccccccEeeccccccCCccEECCC-----ceECCCcEecCceEEEeeEEEccceechhHHHHhhh---------------
Confidence 333333333333444444444443 445688888899999999999999999999887632
Q ss_pred CeecCCCeecCCcEEeCCCCEECCCcEEeCe
Q psy17795 475 PLFNSNGKLNPSITILGDGVTVPGELIVLNS 505 (523)
Q Consensus 475 ~~ig~~~~i~~g~~iIG~~~~Ig~~~~i~~~ 505 (523)
+|-++.|..+ ++|-.+|+||.+++|.+.
T Consensus 319 --vg~~~~IG~~-~~id~~a~lG~nV~V~d~ 346 (371)
T KOG1322|consen 319 --VGWNVPIGIW-ARIDKNAVLGKNVIVADE 346 (371)
T ss_pred --ccccccccCc-eEEecccEeccceEEecc
Confidence 1112233333 456777777777777544
No 246
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=97.89 E-value=0.00014 Score=68.15 Aligned_cols=33 Identities=6% Similarity=0.094 Sum_probs=18.4
Q ss_pred ceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCe
Q psy17795 440 NSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGK 482 (523)
Q Consensus 440 ~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~ 482 (523)
.++||++|.||.+++|.+ .++||++++||++++
T Consensus 124 ~v~IG~~vwIG~~a~Ilp----------GV~IG~gavigagsV 156 (190)
T COG0110 124 PVTIGEDVWIGAGAVILP----------GVTIGEGAVIGAGSV 156 (190)
T ss_pred CeEECCCeEEcCccEECC----------CEEECCCcEEeeCCE
Confidence 355666666666666654 255555555555553
No 247
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=97.88 E-value=1.5e-05 Score=82.96 Aligned_cols=52 Identities=13% Similarity=0.098 Sum_probs=45.1
Q ss_pred cceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCC
Q psy17795 92 CGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYP 152 (523)
Q Consensus 92 ~~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~ 152 (523)
+.+.+|||||| +|+||+. +|+|++++|+|||+|+++.+.. .+++++|+++..
T Consensus 173 ~~i~~iILAGG--~SsRmG~-----~K~ll~~~Gk~ll~~~l~~l~~--~~~~vvV~~~~~ 224 (369)
T PRK14490 173 VPLSGLVLAGG--RSSRMGS-----DKALLSYHESNQLVHTAALLRP--HCQEVFISCRAE 224 (369)
T ss_pred CCceEEEEcCC--ccccCCC-----CcEEEEECCccHHHHHHHHHHh--hCCEEEEEeCCc
Confidence 34679999999 9999975 9999999999999999999985 478888877653
No 248
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=97.77 E-value=0.0017 Score=65.10 Aligned_cols=190 Identities=14% Similarity=0.175 Sum_probs=113.4
Q ss_pred eEEEEecCCCCCCcCCCCCCCCCcccceeC-CcchHHHHHHHHhcC---CCcc-EEEEEccC-ChHHHHHHHHhhhhccC
Q psy17795 95 TTNDTTPGPLKGTRFRPLSLDSPKPLFPVA-GLPMIQHHIEACVQV---PNLK-EIIILGYY-PSADLQKFVLDMVQEYK 168 (523)
Q Consensus 95 ~~iila~g~g~g~R~~~lT~~~pK~ll~i~-g~pli~~~l~~~~~~---~g~~-~i~vv~~~-~~~~i~~~l~~~~~~~~ 168 (523)
-+|+|||| .||||+- .-||.|+|+. |+++++..+++++.. .+.+ ..+|.+.+ ..++..+||++... .+
T Consensus 5 avl~LaGG--~GTRLG~---~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~~~~-~~ 78 (300)
T cd00897 5 VVLKLNGG--LGTSMGC---TGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKKYAG-VN 78 (300)
T ss_pred EEEEecCC--cccccCC---CCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHHcCC-Cc
Confidence 37888999 9999987 8899999995 579999999888642 1322 34556665 66789999988421 23
Q ss_pred eeEEEEeccc-cc----ch---hhhhccccccccc-CCCchhHHH-------Hh-hcccCCcceEEEEc-----cchHH-
Q psy17795 169 INIRYLQEFW-DI----IH---QQICISLYWTWYR-NTRSTYGIY-------RN-SLHWVQEAVYFTLE-----IRSDV- 225 (523)
Q Consensus 169 ~~i~~~~~~~-~~----g~---~~~~~~~~~~~~~-g~~ta~al~-------~~-~i~~~~d~~~Lvl~-----i~~D~- 225 (523)
.++.+..|.. |. |. +.+.......|+. | .++... .+ ++...-++ +.+.+ -..|.
T Consensus 79 ~~v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~G--hG~i~~aL~~sG~L~~l~~~G~~y-i~v~nvDNL~a~~Dp~ 155 (300)
T cd00897 79 VDIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPG--HGDIFESLYNSGLLDTLLAQGKEY-LFVSNIDNLGATVDLR 155 (300)
T ss_pred cCeEEEecCCcccCccccCccccccCCCcceeeccCC--CchHHHHHHHCCcHHHHHhcCCEE-EEEEecccccccCCHH
Confidence 3455444421 10 00 0000112234665 3 343332 22 22233455 55555 22465
Q ss_pred HHHHHHhcCCcceEEEEEEeeCCCCCcceeEEEE-cCCCCcEEEEeecCCCc--------ccceeeeeEEEeeHHHHHHH
Q psy17795 226 VILMHSLYSMAILVTVMATEATRQQSVYYGCIVR-KQQTSEISHYVEKPSTF--------VSTLVNCGVYLFSLDIFQNI 296 (523)
Q Consensus 226 l~~~h~~~~~~~~~tv~~~~~~~~~~~~~g~v~~-d~~~~~V~~~~ekp~~~--------~~~l~~~Giyif~~~il~~l 296 (523)
++.+|...+ +++++=+.+-..++ .+-|.+.. |.. -+|+++.|-|.+. ...+.+++.+.|+-+.++.+
T Consensus 156 ~lg~~~~~~--~~~~~evv~Kt~~d-ek~G~l~~~~g~-~~vvEyse~p~e~~~~~~~~~~~~~~nt~n~~~~l~~L~~~ 231 (300)
T cd00897 156 ILNHMVDNK--AEYIMEVTDKTRAD-VKGGTLIQYEGK-LRLLEIAQVPKEHVDEFKSIKKFKIFNTNNLWVNLKAVKRV 231 (300)
T ss_pred HHHHHHhcC--CceEEEEeecCCCC-CcccEEEEECCE-EEEEEeccCCHHHHHhhcCcccceEEEEeEEEEEHHHHHHH
Confidence 888888888 88776444332112 35566553 432 3578888876531 34567899999998877765
Q ss_pred H
Q psy17795 297 A 297 (523)
Q Consensus 297 ~ 297 (523)
.
T Consensus 232 ~ 232 (300)
T cd00897 232 V 232 (300)
T ss_pred H
Confidence 3
No 249
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=97.76 E-value=0.00012 Score=68.52 Aligned_cols=97 Identities=13% Similarity=0.293 Sum_probs=65.2
Q ss_pred CCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecCCcEEe
Q psy17795 411 DGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITIL 490 (523)
Q Consensus 411 ~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~g~~iI 490 (523)
..+.||+++.+...++++...+|+++.|.+.+++.++.|+.+|.+.+ ++..+.++.||+.+.|....++
T Consensus 21 gdViIG~nS~l~~~V~g~~iivge~v~i~Gdiva~diridmw~kv~g----------NV~ve~dayiGE~~sI~gkl~v- 89 (277)
T COG4801 21 GDVIIGKNSMLKYGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTG----------NVIVENDAYIGEFSSIKGKLTV- 89 (277)
T ss_pred ccEEEcccceeeeeeeeeeEEeccCcEEeeeEEecceeeeeeeEeec----------cEEEcCceEEeccceeeeeEEE-
Confidence 34445555555556677777777777777777777777777777765 4666777777777777766555
Q ss_pred CCCCEECCCcEEeCeEEcCCcE-eCCCCC
Q psy17795 491 GDGVTVPGELIVLNSIVLPYKE-LTRSFK 518 (523)
Q Consensus 491 G~~~~Ig~~~~i~~~~v~~~~~-i~~~~~ 518 (523)
+.+-.||+.+.|.++.+..+-. |...+|
T Consensus 90 ~gdLdig~dV~Ieggfva~g~Ivirnpvp 118 (277)
T COG4801 90 IGDLDIGADVIIEGGFVAKGWIVIRNPVP 118 (277)
T ss_pred ecccccccceEEecCeeecceEEEcCCcc
Confidence 4456788888887777765533 333444
No 250
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=97.66 E-value=5.4e-05 Score=77.66 Aligned_cols=50 Identities=18% Similarity=0.136 Sum_probs=44.2
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccC
Q psy17795 93 GWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYY 151 (523)
Q Consensus 93 ~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~ 151 (523)
.+.+|||||| +|+||+. +|.|+++.|+||++|+++.+.. .+++|+|+++.
T Consensus 160 ~i~~IILAGG--kSsRMG~-----dKaLL~~~GkpLl~~~ie~l~~--~~~~ViVv~~~ 209 (346)
T PRK14500 160 PLYGLVLTGG--KSRRMGK-----DKALLNYQGQPHAQYLYDLLAK--YCEQVFLSARP 209 (346)
T ss_pred CceEEEEecc--ccccCCC-----CcccceeCCccHHHHHHHHHHh--hCCEEEEEeCc
Confidence 3459999999 9999976 9999999999999999999985 58899888864
No 251
>KOG4750|consensus
Probab=97.65 E-value=7.6e-05 Score=69.58 Aligned_cols=36 Identities=11% Similarity=0.195 Sum_probs=24.5
Q ss_pred ceEECCCCEECCCcEEcCCCCCCCCCCCceecCCCCeecCCCeecC
Q psy17795 440 NSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNP 485 (523)
Q Consensus 440 ~~iIg~~~~Ig~~~~i~~~~~~~~~~~~~v~I~~~~~ig~~~~i~~ 485 (523)
.-.||+||.||.|+.|-+ +++||+++.|++++++..
T Consensus 200 hP~Igd~vliGaGvtILg----------nV~IGegavIaAGsvV~k 235 (269)
T KOG4750|consen 200 HPKIGDNVLIGAGVTILG----------NVTIGEGAVIAAGSVVLK 235 (269)
T ss_pred CCcccCCeEEccccEEeC----------CeeECCCcEEeccceEEe
Confidence 347788888888877765 466777777776665433
No 252
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=97.64 E-value=0.00037 Score=66.69 Aligned_cols=68 Identities=22% Similarity=0.349 Sum_probs=51.8
Q ss_pred EEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHHhhhhccCeeEEEEe
Q psy17795 96 TNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRYLQ 175 (523)
Q Consensus 96 ~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~ 175 (523)
|||+|-| ..+|+ | .|.|.+++|+|||+|+++++.+...+++|+|.+.. +.+.+.+.+ ++.++.+..
T Consensus 2 aiIpAR~--gS~rl-p-----~Knl~~l~gkpLi~~~i~~a~~s~~~d~IvVaTd~--~~i~~~~~~----~g~~v~~~~ 67 (217)
T PF02348_consen 2 AIIPARG--GSKRL-P-----GKNLKPLGGKPLIEYVIERAKQSKLIDEIVVATDD--EEIDDIAEE----YGAKVIFRR 67 (217)
T ss_dssp EEEEE-S--SSSSS-T-----TGGGSEETTEEHHHHHHHHHHHTTTTSEEEEEESS--HHHHHHHHH----TTSEEEE--
T ss_pred EEEecCC--CCCCC-C-----cchhhHhCCccHHHHHHHHHHhCCCCCeEEEeCCC--HHHHHHHHH----cCCeeEEcC
Confidence 7899988 67777 4 59999999999999999999998789999888764 456666665 566664444
Q ss_pred cc
Q psy17795 176 EF 177 (523)
Q Consensus 176 ~~ 177 (523)
.+
T Consensus 68 ~~ 69 (217)
T PF02348_consen 68 GS 69 (217)
T ss_dssp TT
T ss_pred hh
Confidence 43
No 253
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=97.58 E-value=0.0035 Score=65.93 Aligned_cols=193 Identities=17% Similarity=0.194 Sum_probs=111.3
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeC-CcchHHHHHHHHhcC---CCcc-EEEEEccC-ChHHHHHHHHhhhhcc
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVA-GLPMIQHHIEACVQV---PNLK-EIIILGYY-PSADLQKFVLDMVQEY 167 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~-g~pli~~~l~~~~~~---~g~~-~i~vv~~~-~~~~i~~~l~~~~~~~ 167 (523)
.-+|+|||| .||||+- .-||.+++|. ++++++..++++... .+.+ ..+|.+.. ..++.+++|.++ ..+
T Consensus 57 vavl~LaGG--lGTrlG~---~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~ky-fg~ 130 (420)
T PF01704_consen 57 VAVLKLAGG--LGTRLGC---SGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEKY-FGL 130 (420)
T ss_dssp EEEEEEEES--BSGCCTE---SSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHHG-CGS
T ss_pred EEEEEEcCc--ccCccCC---CCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHHh-cCC
Confidence 346889999 9999987 8899999995 568888888877641 1222 34555555 778999999983 334
Q ss_pred CeeEEEEecc-ccc--chhhhhc------c-ccccccc-CCCchhHHH-------Hhhc-ccCCcceEEEEc-----cch
Q psy17795 168 KINIRYLQEF-WDI--IHQQICI------S-LYWTWYR-NTRSTYGIY-------RNSL-HWVQEAVYFTLE-----IRS 223 (523)
Q Consensus 168 ~~~i~~~~~~-~~~--g~~~~~~------~-~~~~~~~-g~~ta~al~-------~~~i-~~~~d~~~Lvl~-----i~~ 223 (523)
+.++.+..|. -|. -+...+. + ....||. | .++-.. .+.+ ...-++ +.|.+ -..
T Consensus 131 ~~~v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~G--hGdi~~aL~~sG~Ld~l~~~G~ey-ifv~nvDNL~a~~ 207 (420)
T PF01704_consen 131 DVDVFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPG--HGDIYRALYNSGLLDKLLARGIEY-IFVSNVDNLGAVV 207 (420)
T ss_dssp SCCEEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-T--GGGHHHHHHHTTHHHHHHHTT--E-EEEEETTBTT-TT
T ss_pred CcceEEEeecCcceEeCCCccccccccccccchhhccCCC--CcceehhhhccChHHHHHHcCCeE-EEEEecCCccccc
Confidence 4456555542 110 0001111 1 1135777 5 555333 2222 233466 66665 235
Q ss_pred HH-HHHHHHhcCCcceEEEEEEeeCCCCCcceeEEEEcCCCCcEEEEeecCCC--------cccceeeeeEEEeeHHHHH
Q psy17795 224 DV-VILMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPST--------FVSTLVNCGVYLFSLDIFQ 294 (523)
Q Consensus 224 D~-l~~~h~~~~~~~~~tv~~~~~~~~~~~~~g~v~~d~~~~~V~~~~ekp~~--------~~~~l~~~Giyif~~~il~ 294 (523)
|. ++.++.+.+ +++.+-+.+-...+ ..-|.+...+..-+|+++.+-|.+ ....+-++|...|+-+.++
T Consensus 208 Dp~~lG~~~~~~--~~~~~evv~Kt~~d-ek~Gvl~~~~G~~~vvEysqip~~~~~~~~~~~~~~~FntnNi~~~l~~l~ 284 (420)
T PF01704_consen 208 DPVFLGYMIEKN--ADFGMEVVPKTSPD-EKGGVLCRYDGKLQVVEYSQIPKEHMAEFKDIKGFLLFNTNNIWFSLDFLK 284 (420)
T ss_dssp -HHHHHHHHHTT---SEEEEEEE-CSTT-TSSEEEEEETTEEEEEEGGGS-HHGHHHHTSTTTSBEEEEEEEEEEHHHHH
T ss_pred CHHHHHHHHhcc--chhheeeeecCCCC-CceeEEEEeCCccEEEEeccCCHHHHHhhhccccceEEEeceeeEEHHHHH
Confidence 66 888888887 88777666543222 355766543210246666665532 1234568888899988887
Q ss_pred HHHH
Q psy17795 295 NIAA 298 (523)
Q Consensus 295 ~l~~ 298 (523)
.+.+
T Consensus 285 ~~~~ 288 (420)
T PF01704_consen 285 RLLE 288 (420)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6644
No 254
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=97.38 E-value=0.003 Score=66.63 Aligned_cols=213 Identities=16% Similarity=0.186 Sum_probs=107.0
Q ss_pred ceEEEEEEeeCCCCCcceeEEEEcCCCC---------cEEEEeecCCC-----------cccceeeeeEEEeeHHHHHHH
Q psy17795 237 ILVTVMATEATRQQSVYYGCIVRKQQTS---------EISHYVEKPST-----------FVSTLVNCGVYLFSLDIFQNI 296 (523)
Q Consensus 237 ~~~tv~~~~~~~~~~~~~g~v~~d~~~~---------~V~~~~ekp~~-----------~~~~l~~~Giyif~~~il~~l 296 (523)
+.+++++.+.+..-.+.-|+++.|++ + .+.+|..||.. ....+.++|++.|+.+..+.|
T Consensus 78 ~g~~~la~p~~~~~at~HGVfv~~~~-~~~~~~~~~~~v~~~L~KpS~eem~~~~av~~~~~~~ldsG~~~~s~~~~e~L 156 (414)
T PF07959_consen 78 PGVTALAHPSSLEYATNHGVFVLDRQ-GPDEEDLEYREVKDFLQKPSEEEMRASGAVLPDGNVLLDSGIVFFSSKAVESL 156 (414)
T ss_pred CCEEEEEeeCCHHHhcCCeEEEeCCC-CCccccchhhhHHHhhcCCCHHHHHhCCcccCCCcccccccceeccHHHHHHH
Confidence 45666666665444567899999887 6 78899999852 234467999999999887766
Q ss_pred HHhhccc--c-cccccccccccCCCCCcccccchhhhhhhhhcCCcEEEEEcchhHhhhccchhhhhccHHHHhhhcccC
Q psy17795 297 AAVFQSK--Q-DEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQLYKTRH 373 (523)
Q Consensus 297 ~~~~~~~--~-~e~~~~~~~~~~~~~~~~~~~~~~dil~~li~~g~v~~~~~~g~w~dIgt~~dyl~an~~~l~~~~~~~ 373 (523)
...-... . -.||.. . -..+=.+++-.|++..|.......-..... .+.+....+..+.+.+.......
T Consensus 157 ~~~~~~~~~~~~~y~~~--~----g~~~~ei~lY~Dfl~aLg~~~t~e~~~~~~--~~~~~~~~l~~aR~~l~~~Lr~~- 227 (414)
T PF07959_consen 157 LYLHVSPPLDLCTYYGL--S----GALPCEIDLYGDFLQALGPDATEEYPENTS--NVLKEESELREARQKLWKLLRGT- 227 (414)
T ss_pred HHhccCchHhhhhhhhh--c----CCccceehHHHHHHHHhcCCccccCccccC--CCcchhHHHHHHHHHHHHHhhhc-
Confidence 4321111 0 112210 0 000113455577777776432110000000 01111111222222222211110
Q ss_pred Ccccc-cCCCceEecCc-------EECCCC-EECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEEC
Q psy17795 374 PERLQ-CSSQCKTIGDV-------YIHSSA-SVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVG 444 (523)
Q Consensus 374 ~~~~~-~~~~~~i~~~~-------~i~~~~-~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg 444 (523)
|..+. -..+...+=+. ...... .+.... + ..+.....+.+.+++.|-+|+|..++.+|++++|++|.|+
T Consensus 228 ~l~vv~l~~~~F~H~GTs~E~L~~lt~~~~l~~~~~~-~-~~~~~~~~~~~~~~~~VinSil~~~~~vg~~svIe~s~l~ 305 (414)
T PF07959_consen 228 PLNVVPLPNGKFYHFGTSREYLEHLTSDSELGIMRRK-F-SHSPATTPSDSEASSCVINSILEGGVSVGPGSVIEHSHLG 305 (414)
T ss_pred cccccccCCceEEEecCCHHHHHhhccCcccccceee-e-eccccccccccCCCeeEEEeEecCCceECCCCEEEeeecC
Confidence 10000 00011000000 000000 011111 1 1112223455677888888999999999999999999999
Q ss_pred CCCEECCCcEEcCCCCC
Q psy17795 445 RNSKVGNWSRVEGTPCD 461 (523)
Q Consensus 445 ~~~~Ig~~~~i~~~~~~ 461 (523)
.++.||++|.|.|....
T Consensus 306 ~~~~IG~~cIisGv~~~ 322 (414)
T PF07959_consen 306 GPWSIGSNCIISGVDIN 322 (414)
T ss_pred CCCEECCCCEEECCccc
Confidence 99999999999886443
No 255
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=97.36 E-value=0.0023 Score=68.08 Aligned_cols=192 Identities=14% Similarity=0.137 Sum_probs=112.0
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeC---CcchHHHHHHHHhcC-------------CCcc-EEEEEccC-ChHH
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVA---GLPMIQHHIEACVQV-------------PNLK-EIIILGYY-PSAD 155 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~---g~pli~~~l~~~~~~-------------~g~~-~i~vv~~~-~~~~ 155 (523)
.-+|+|||| .||||+- .-||-|++|+ ++++++...+++... .+.. ..+|.+.. ..++
T Consensus 117 vavvlLAGG--qGTRLG~---~~PKg~~~Iglps~kslfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~~~ 191 (493)
T PLN02435 117 LAVVLLSGG--QGTRLGS---SDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTDEA 191 (493)
T ss_pred EEEEEeCCC--cccccCC---CCCccceecCCCCCCcHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchhHH
Confidence 346778888 9999998 8999999885 789999988876421 0111 23566655 6778
Q ss_pred HHHHHHhhhhccCe---eEEEEeccc-cc-c-hhhhhcc--ccccccc-CCCchhHHH-------Hhhc-ccCCcceEEE
Q psy17795 156 LQKFVLDMVQEYKI---NIRYLQEFW-DI-I-HQQICIS--LYWTWYR-NTRSTYGIY-------RNSL-HWVQEAVYFT 218 (523)
Q Consensus 156 i~~~l~~~~~~~~~---~i~~~~~~~-~~-g-~~~~~~~--~~~~~~~-g~~ta~al~-------~~~i-~~~~d~~~Lv 218 (523)
.++||.+. ..+|+ .|.+..|.. |. . +-....+ ..-.|+. | .++-.. .+.+ ...-++ +.+
T Consensus 192 T~~ff~~~-~~FGl~~~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~G--nGgiy~aL~~sG~Ld~l~~~Gi~y-i~v 267 (493)
T PLN02435 192 TRKFFESH-KYFGLEADQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDG--NGGVYAALKSSRLLEDMASRGIKY-VDC 267 (493)
T ss_pred HHHHHHhC-CCCCCCccceEEEecCCcceECCCCCcccCCCcccccCCCC--CcHHHHHHHHCCcHHHHHhcCCEE-EEE
Confidence 99999873 33443 466665532 10 0 0000000 0124555 4 444333 2222 223455 444
Q ss_pred Ec---c---chHH-HHHHHHhcCCcceEEEEEEeeCCCCCcceeEEEEc-CCCC--cEEEEeecCCC-----------cc
Q psy17795 219 LE---I---RSDV-VILMHSLYSMAILVTVMATEATRQQSVYYGCIVRK-QQTS--EISHYVEKPST-----------FV 277 (523)
Q Consensus 219 l~---i---~~D~-l~~~h~~~~~~~~~tv~~~~~~~~~~~~~g~v~~d-~~~~--~V~~~~ekp~~-----------~~ 277 (523)
.+ + ..|. ++-++...+ .++.+-+.+-..+ ...-|.+... .+ | .|.++.|-+.. ..
T Consensus 268 ~~vDN~L~~~~DP~flG~~~~~~--~d~~~kVv~K~~~-~EkvG~i~~~~~~-g~~~vvEYsEl~~~~~~~~~~~~g~L~ 343 (493)
T PLN02435 268 YGVDNALVRVADPTFLGYFIDKG--VASAAKVVRKAYP-QEKVGVFVRRGKG-GPLTVVEYSELDQAMASAINQQTGRLR 343 (493)
T ss_pred EecccccccccCHHHHHHHHhcC--CceEEEeeecCCC-CCceeEEEEecCC-CCEEEEEeccCCHHHHhccCccccccc
Confidence 44 2 3465 888888887 7776654432211 2355777542 22 4 47777775431 12
Q ss_pred cceeeeeEEEeeHHHHHHHHH
Q psy17795 278 STLVNCGVYLFSLDIFQNIAA 298 (523)
Q Consensus 278 ~~l~~~Giyif~~~il~~l~~ 298 (523)
....++++++|+-++++.+.+
T Consensus 344 ~~~gnI~~h~fs~~fL~~~~~ 364 (493)
T PLN02435 344 YCWSNVCLHMFTLDFLNQVAN 364 (493)
T ss_pred cchhhHHHhhccHHHHHHHHH
Confidence 356788899999999887754
No 256
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=97.28 E-value=0.00015 Score=48.31 Aligned_cols=25 Identities=44% Similarity=0.844 Sum_probs=8.6
Q ss_pred CCEECCCCEECCCcEECCCCEECCC
Q psy17795 394 SASVHPTAIVGPNVSIDDGAVIGPG 418 (523)
Q Consensus 394 ~~~I~~~~~I~~~~~Ig~~~~I~~~ 418 (523)
+++|++++.|.+++.||++|.|+++
T Consensus 7 ~~~i~~~~~i~~~~~Ig~~~~I~~~ 31 (36)
T PF00132_consen 7 NVIIGPNAVIGGGVVIGDNCVIGPG 31 (36)
T ss_dssp TEEEETTEEEETTEEE-TTEEEETT
T ss_pred CCEECCCcEecCCCEECCCCEEcCC
Confidence 3333333333333333333333333
No 257
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=97.25 E-value=0.0027 Score=59.63 Aligned_cols=62 Identities=21% Similarity=0.274 Sum_probs=47.6
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCCcchHHHHHHHHhcCCCccEEEEEccC--ChHHHHHHHHh
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYY--PSADLQKFVLD 162 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g~pli~~~l~~~~~~~g~~~i~vv~~~--~~~~i~~~l~~ 162 (523)
|-++|+.|-. .+|||. -|.|+|++++|||+++|+++.....+++++|.+.. ..+.|.++..+
T Consensus 3 ~I~~IiQARm-gStRLp------gKvLlpL~~~pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~ 66 (241)
T COG1861 3 MILVIIQARM-GSTRLP------GKVLLPLGGEPMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRS 66 (241)
T ss_pred cEEEEeeecc-cCccCC------cchhhhcCCCchHHHHHHHHhccccccceEEEecCCcchhHHHHHHHH
Confidence 4456666663 356664 49999999999999999999988778999999876 33456666655
No 258
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=97.23 E-value=0.00023 Score=47.46 Aligned_cols=29 Identities=17% Similarity=0.308 Sum_probs=12.1
Q ss_pred CCCCEECCCCEEe-ceEECCCCEECCCcEE
Q psy17795 427 LQGASIGNHSLVL-NSIVGRNSKVGNWSRV 455 (523)
Q Consensus 427 g~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i 455 (523)
|++|.|++++.|. ++.||+++.|++++.|
T Consensus 5 g~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I 34 (36)
T PF00132_consen 5 GDNVIIGPNAVIGGGVVIGDNCVIGPGVVI 34 (36)
T ss_dssp ETTEEEETTEEEETTEEE-TTEEEETTEEE
T ss_pred cCCCEECCCcEecCCCEECCCCEEcCCCEE
Confidence 3344444444433 4444444444444444
No 259
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=97.04 E-value=0.018 Score=60.31 Aligned_cols=189 Identities=16% Similarity=0.213 Sum_probs=109.7
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCcccceeC-CcchHHHHHHHHhcC---CCcc-EEEEEccCChHHHHHHHHhhhhcc
Q psy17795 93 GWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVA-GLPMIQHHIEACVQV---PNLK-EIIILGYYPSADLQKFVLDMVQEY 167 (523)
Q Consensus 93 ~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~-g~pli~~~l~~~~~~---~g~~-~i~vv~~~~~~~i~~~l~~~~~~~ 167 (523)
+.-+|+|||| +|+||+- .-||.+++|. |+++++.+.+.++.+ .+++ ..+|.+....++-..++... ..+
T Consensus 105 klAvl~LaGG--qGtrlG~---~gPKgl~~V~~gks~~dl~~~qIk~ln~~~~~~vP~~iMtS~nt~~t~s~f~~~-~Y~ 178 (472)
T COG4284 105 KLAVLKLAGG--QGTRLGC---DGPKGLFEVKDGKSLFDLQAEQIKYLNRQYNVDVPLYIMTSLNTEETDSYFKSN-DYF 178 (472)
T ss_pred ceEEEEecCC--ccccccc---CCCceeEEecCCCcHHHHHHHHHHHHHHHhCCCCCEEEEecCCcHHHHHHHhhh-hhc
Confidence 3457888999 9999998 8899999999 899999888877632 1333 23444446555666666552 112
Q ss_pred C---eeEEEEecc-cc--cchhhhhcc--cc--ccccc-CCCchh---HHH----Hh-hcccCCcceEEEEc-----cch
Q psy17795 168 K---INIRYLQEF-WD--IIHQQICIS--LY--WTWYR-NTRSTY---GIY----RN-SLHWVQEAVYFTLE-----IRS 223 (523)
Q Consensus 168 ~---~~i~~~~~~-~~--~g~~~~~~~--~~--~~~~~-g~~ta~---al~----~~-~i~~~~d~~~Lvl~-----i~~ 223 (523)
+ .+|.+..|. -| +.....+.. .+ .-||. | .++ +|. .+ ++...-+. +.|.| ...
T Consensus 179 ~~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~G--nG~lf~aL~~SG~le~l~~~G~e~-lfV~nIDNL~~~v 255 (472)
T COG4284 179 GLDKEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPG--NGDLFKALKSSGILEKLIAQGIEY-LFVSNIDNLGATV 255 (472)
T ss_pred CCCHHHeEEEecCCcceeecccCccccccCCcccccCCCC--CccHHHHHHhcchHHHHHhcCceE-EEEeccccccccc
Confidence 2 235555442 11 110111110 01 25776 3 333 333 12 22233455 55555 235
Q ss_pred HH-HHHHHHhcCCcceEEEEEEeeCCCCCcceeEEE-EcCCCCcEEEEeecCCCc----------ccceee-eeEEEeeH
Q psy17795 224 DV-VILMHSLYSMAILVTVMATEATRQQSVYYGCIV-RKQQTSEISHYVEKPSTF----------VSTLVN-CGVYLFSL 290 (523)
Q Consensus 224 D~-l~~~h~~~~~~~~~tv~~~~~~~~~~~~~g~v~-~d~~~~~V~~~~ekp~~~----------~~~l~~-~Giyif~~ 290 (523)
|. ++.++...+ .+.++=++.-.+. ...-|.++ .|++ -||+++.|-|... .....+ .++++++-
T Consensus 256 D~~~lg~~~~~~--~e~~~e~t~Kt~a-~ekvG~Lv~~~g~-~rllEysev~~~~~~~~~s~~~~~~~n~Nni~l~~~~~ 331 (472)
T COG4284 256 DLKFLGFMAETN--YEYLMETTDKTKA-DEKVGILVTYDGK-LRLLEYSEVPNEHREEFTSDGKLKYFNTNNIWLHLFSV 331 (472)
T ss_pred CHHHHHHHHhcC--cceeEEEeecccc-cccceEEEEeCCc-eEEEEEecCChhHhhhhccccceeeeccccceeehhHH
Confidence 76 899999888 7777666543322 24567766 6766 7899998877531 112344 67777776
Q ss_pred HHHH
Q psy17795 291 DIFQ 294 (523)
Q Consensus 291 ~il~ 294 (523)
+.+.
T Consensus 332 ~~l~ 335 (472)
T COG4284 332 KFLK 335 (472)
T ss_pred HHHH
Confidence 6553
No 260
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=97.02 E-value=0.0094 Score=60.10 Aligned_cols=187 Identities=11% Similarity=0.058 Sum_probs=105.1
Q ss_pred EEEEecCCCCCCcCCCCCCCCCccccee---CCcchHHHHHHHHhcCC-------Ccc-EEEEEccC-ChHHHHHHHHhh
Q psy17795 96 TNDTTPGPLKGTRFRPLSLDSPKPLFPV---AGLPMIQHHIEACVQVP-------NLK-EIIILGYY-PSADLQKFVLDM 163 (523)
Q Consensus 96 ~iila~g~g~g~R~~~lT~~~pK~ll~i---~g~pli~~~l~~~~~~~-------g~~-~i~vv~~~-~~~~i~~~l~~~ 163 (523)
+|+|||| .||||+- .-||-++++ .|+++++..+++++... +.. .++|.+.. ..++.+++|++.
T Consensus 3 ~vllaGG--~GTRLG~---~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~n 77 (315)
T cd06424 3 FVLVAGG--LGERLGY---SGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEEN 77 (315)
T ss_pred EEEecCC--CccccCC---CCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHHC
Confidence 6888999 9999998 899999999 48999999998886531 111 34666665 677899999873
Q ss_pred hhccC---eeEEEEeccc-c-cc--hhhhhccc----cccccc-CCCchhHHH-------Hhhcc-cCCcceEEEEc---
Q psy17795 164 VQEYK---INIRYLQEFW-D-II--HQQICISL----YWTWYR-NTRSTYGIY-------RNSLH-WVQEAVYFTLE--- 220 (523)
Q Consensus 164 ~~~~~---~~i~~~~~~~-~-~g--~~~~~~~~----~~~~~~-g~~ta~al~-------~~~i~-~~~d~~~Lvl~--- 220 (523)
..+| .+|.+..|.. | +. +...++.. ...|+. | .++-.. .+.+. ..-++ +.+.+
T Consensus 78 -~yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~G--hGdiy~aL~~sGlLd~l~~~Giky-i~v~~vdN 153 (315)
T cd06424 78 -NYFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHG--HGDVHTLLYNSGLLKKWIEAGYKW-LVFFQDTN 153 (315)
T ss_pred -CccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCC--chHHHHHHHHCCcHHHHHHCCCEE-EEEEecch
Confidence 2234 3466655532 1 00 00110011 124555 3 444332 22222 33455 44433
Q ss_pred c---chHH-HHHHHHhcCCcceEEEEEEeeCCCCCcceeEEEE-cCCCC--cE--EEEeecCCC----------------
Q psy17795 221 I---RSDV-VILMHSLYSMAILVTVMATEATRQQSVYYGCIVR-KQQTS--EI--SHYVEKPST---------------- 275 (523)
Q Consensus 221 i---~~D~-l~~~h~~~~~~~~~tv~~~~~~~~~~~~~g~v~~-d~~~~--~V--~~~~ekp~~---------------- 275 (523)
. ..|. ++-++..++ +++...+.+. .....-|++.. +..+| .| +++.|-+..
T Consensus 154 ~L~~~adP~fiG~~~~~~--~d~~~k~v~~--~~~E~vG~~~~~~~~~g~~~v~nvEYsel~~~~~~~~~~~g~~~~~~~ 229 (315)
T cd06424 154 ALAFKAIPAVLGVSATKS--LDMNSLTVPR--KPKEAIGALCKLTKNNGKSMTINVEYNQLDPLLRASGKDDGDVDDKTG 229 (315)
T ss_pred hhhhccChhhEEEEecCC--CceEeEEEeC--CCCCceeeEEEEecCCCceEEEEEEeecCCHHHHhcCCCCCCcccccc
Confidence 1 1333 555666666 6766555442 22356787753 21113 34 777664320
Q ss_pred cccceeeeeEEEeeHHHHHH
Q psy17795 276 FVSTLVNCGVYLFSLDIFQN 295 (523)
Q Consensus 276 ~~~~l~~~Giyif~~~il~~ 295 (523)
......|+++++|+-+.+..
T Consensus 230 ~s~f~gNi~~~~f~l~~~~~ 249 (315)
T cd06424 230 FSPFPGNINQLVFSLGPYMD 249 (315)
T ss_pred cccCCCeeeeEEEeHHHHHH
Confidence 11226789999999775543
No 261
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=97.01 E-value=0.00084 Score=44.21 Aligned_cols=30 Identities=30% Similarity=0.450 Sum_probs=12.4
Q ss_pred EECCCCEECCCCEEeeeEECCCCEECCCCEE
Q psy17795 408 SIDDGAVIGPGVRIKESIILQGASIGNHSLV 438 (523)
Q Consensus 408 ~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I 438 (523)
.||++|.|+++|.| ...||++|.|+++++|
T Consensus 3 ~IG~~~~ig~~~~i-gi~igd~~~i~~g~~I 32 (34)
T PF14602_consen 3 TIGDNCFIGANSTI-GITIGDGVIIGAGVVI 32 (34)
T ss_dssp EE-TTEEE-TT-EE-TSEE-TTEEE-TTEEE
T ss_pred EECCCEEECccccc-CCEEcCCCEECCCCEE
Confidence 44444444444444 2445555555555544
No 262
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=96.83 E-value=0.0049 Score=58.03 Aligned_cols=67 Identities=25% Similarity=0.405 Sum_probs=49.5
Q ss_pred eEecCcEECCCCEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEe-ceEECCCCEECCCcEEcC
Q psy17795 384 KTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVL-NSIVGRNSKVGNWSRVEG 457 (523)
Q Consensus 384 ~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~-~~iIg~~~~Ig~~~~i~~ 457 (523)
...+++.||+++.+. ..++|+...+|+++.|...++..++.|+..|.+. |++.++++.||+++.|.+
T Consensus 18 vv~gdViIG~nS~l~-------~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~dayiGE~~sI~g 85 (277)
T COG4801 18 VVKGDVIIGKNSMLK-------YGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIKG 85 (277)
T ss_pred EEeccEEEcccceee-------eeeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCceEEeccceeee
Confidence 444555555555554 3366777777777788777777888888888887 888888889999888876
No 263
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=96.58 E-value=0.024 Score=65.14 Aligned_cols=63 Identities=16% Similarity=0.194 Sum_probs=45.6
Q ss_pred ceEEEEEEeeCCCCCcceeEEEEcCCC-CcEEEEeecCCC--------cccceeeeeEEEeeHHHHHHHHHh
Q psy17795 237 ILVTVMATEATRQQSVYYGCIVRKQQT-SEISHYVEKPST--------FVSTLVNCGVYLFSLDIFQNIAAV 299 (523)
Q Consensus 237 ~~~tv~~~~~~~~~~~~~g~v~~d~~~-~~V~~~~ekp~~--------~~~~l~~~Giyif~~~il~~l~~~ 299 (523)
++++..+...+.+-.++.|+++.|.++ +++..+..||.. ....+.|+|+|+|+.+..+.|...
T Consensus 176 ~~~~~~~~~~~~~~~~~HGVfv~~~~~~~~~~~~LqKps~eel~a~~~~~~~l~D~g~~~~~~~a~~~L~~~ 247 (974)
T PRK13412 176 ADVVCYGLWVDPSLATNHGVFVSSRKSPERLDFMLQKPSLEELGGLSKTHLFLMDIGIWLLSDRAVELLMKR 247 (974)
T ss_pred cCeEEEEeccChhhccCceEEEeCCCChHHHHHHhcCCCHHHHHhhhcCCeEEEeeeEEEEChHHHHHHHHh
Confidence 555666655544456788999988752 478888899862 345688999999999988777543
No 264
>KOG2638|consensus
Probab=96.27 E-value=0.79 Score=47.21 Aligned_cols=167 Identities=16% Similarity=0.211 Sum_probs=90.4
Q ss_pred EEEEecCCCCCCcCCCCCCCCCcccceeCC-cchHHHHHHHHhcC---CCccE-EEEEccC-ChHHHHHHHHhhhhccCe
Q psy17795 96 TNDTTPGPLKGTRFRPLSLDSPKPLFPVAG-LPMIQHHIEACVQV---PNLKE-IIILGYY-PSADLQKFVLDMVQEYKI 169 (523)
Q Consensus 96 ~iila~g~g~g~R~~~lT~~~pK~ll~i~g-~pli~~~l~~~~~~---~g~~~-i~vv~~~-~~~~i~~~l~~~~~~~~~ 169 (523)
++=|-|| .|+-|+- .-||.++++.+ .+.|+-++.+.+.+ -+++- .++...+ -.++.++++.++. ...+
T Consensus 106 vlKLNGG--lGttmGc---~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil~ky~-~~kv 179 (498)
T KOG2638|consen 106 VLKLNGG--LGTTMGC---KGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKILKKYA-GSKV 179 (498)
T ss_pred EEEecCC--cCCcccc---CCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHHHHhc-CCce
Confidence 4557777 9999987 88999999985 67777666555432 13332 3444444 5568888888752 2244
Q ss_pred eEEEEecc--------cccchhhhhc-cccccccc-CCCch---hHHH----Hh-hcccCCcceEEEEc-----cchHH-
Q psy17795 170 NIRYLQEF--------WDIIHQQICI-SLYWTWYR-NTRST---YGIY----RN-SLHWVQEAVYFTLE-----IRSDV- 225 (523)
Q Consensus 170 ~i~~~~~~--------~~~g~~~~~~-~~~~~~~~-g~~ta---~al~----~~-~i~~~~d~~~Lvl~-----i~~D~- 225 (523)
+|.-..|. ..+-...... +....||. | .+ ++++ .+ ++.+.-|. ++|.| -..|+
T Consensus 180 ~i~TF~QS~~PRi~~etlLPv~~~~~d~~~d~WYPPG--HGd~f~sl~nSG~Ld~llaqGkEy-lFVSNiDNLGAtvDL~ 256 (498)
T KOG2638|consen 180 DIKTFNQSKYPRIDKETLLPVPKLEADSDNEAWYPPG--HGDLFDSLHNSGLLDKLLAQGKEY-LFVSNIDNLGATVDLN 256 (498)
T ss_pred eEEEeccccCCccccccccCCCcccCCCCcccccCCC--CccHHHHHhccchHHHHHhCCceE-EEEeccccccceeeHH
Confidence 45433331 1111000000 12357998 4 43 3444 33 34444566 77766 23566
Q ss_pred HHHHHHhcCCcceEEEEEEeeCCCCCcceeEEE-EcCCCCcEEEEeecCCC
Q psy17795 226 VILMHSLYSMAILVTVMATEATRQQSVYYGCIV-RKQQTSEISHYVEKPST 275 (523)
Q Consensus 226 l~~~h~~~~~~~~~tv~~~~~~~~~~~~~g~v~-~d~~~~~V~~~~ekp~~ 275 (523)
++++....+ ....|=+++-.+.+ .+-|.+. .+.. -|++++..-|.+
T Consensus 257 ILn~~i~~~--~ey~MEvTdKT~aD-vKgGtLi~y~G~-lrlLEiaQVP~e 303 (498)
T KOG2638|consen 257 ILNHVINNN--IEYLMEVTDKTRAD-VKGGTLIQYEGK-LRLLEIAQVPKE 303 (498)
T ss_pred HHHHHhcCC--CceEEEecccchhh-cccceEEeecCE-EEEEEeccCChh
Confidence 788877777 77666665433222 2335443 3322 245555555543
No 265
>PLN02830 UDP-sugar pyrophosphorylase
Probab=95.08 E-value=0.62 Score=51.42 Aligned_cols=154 Identities=11% Similarity=0.023 Sum_probs=88.7
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCcccceeC---CcchHHHHHHHHhcC----------CCcc-EEEEEccC-ChHHHH
Q psy17795 93 GWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVA---GLPMIQHHIEACVQV----------PNLK-EIIILGYY-PSADLQ 157 (523)
Q Consensus 93 ~m~~iila~g~g~g~R~~~lT~~~pK~ll~i~---g~pli~~~l~~~~~~----------~g~~-~i~vv~~~-~~~~i~ 157 (523)
++-+|+|||| .||||+- .-||-++|++ |+++++..++++... .+.. -++|.+.+ ..++..
T Consensus 128 kvavllLaGG--lGTRLG~---~~pK~~lpv~~~~gkt~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~ 202 (615)
T PLN02830 128 NAAFVLVAGG--LGERLGY---SGIKVALPTETATGTCYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTL 202 (615)
T ss_pred cEEEEEecCC--cccccCC---CCCCcceecccCCCCcHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHH
Confidence 3457888888 9999997 8899999974 899999999887542 0111 24566655 667899
Q ss_pred HHHHhhhhccC---eeEEEEeccc-c-cc-hhhhhc-----cccccccc-CCCchhHHH-------Hhhc-ccCCcceEE
Q psy17795 158 KFVLDMVQEYK---INIRYLQEFW-D-II-HQQICI-----SLYWTWYR-NTRSTYGIY-------RNSL-HWVQEAVYF 217 (523)
Q Consensus 158 ~~l~~~~~~~~---~~i~~~~~~~-~-~g-~~~~~~-----~~~~~~~~-g~~ta~al~-------~~~i-~~~~d~~~L 217 (523)
+||.+. ..+| .+|.+..|.. | +. +..+.. .....|+. | .++-.. .+.+ ...-++ +.
T Consensus 203 ~~~~~n-~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~G--hGdi~~aL~~sGlLd~l~~~G~~y-i~ 278 (615)
T PLN02830 203 KLLERN-DYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHG--HGDVHALLYSSGLLDKWLSAGKKW-VV 278 (615)
T ss_pred HHHHHC-CccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCC--ccHHHHHHHHCCCHHHHHHcCCEE-EE
Confidence 999873 3333 2465555532 1 00 000100 01224566 3 333322 2222 233455 55
Q ss_pred EEc---c---chHH-HHHHHHhcCCcceEEEEEEeeCCCCCcceeEEEE
Q psy17795 218 TLE---I---RSDV-VILMHSLYSMAILVTVMATEATRQQSVYYGCIVR 259 (523)
Q Consensus 218 vl~---i---~~D~-l~~~h~~~~~~~~~tv~~~~~~~~~~~~~g~v~~ 259 (523)
+.+ . ..|. ++-++...+ .++.+-+.+-. ....-|++..
T Consensus 279 v~~vDN~L~~~Adp~flG~~~~~~--~d~~~kvv~K~--~~E~vGvi~~ 323 (615)
T PLN02830 279 FFQDTNGLVFKAIPAALGVSATKG--FDMNSLAVPRK--AKEAIGAIAK 323 (615)
T ss_pred EEeccchhhhcccHHHhHHHHhcC--CceEEEEEECC--CCcccceEEE
Confidence 544 1 2344 788888887 77776665432 2245676653
No 266
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=89.81 E-value=0.62 Score=49.26 Aligned_cols=52 Identities=23% Similarity=0.328 Sum_probs=44.7
Q ss_pred CEECCCCEECCCcEECCCCEECCCCEEeeeEECCCCEECCCCEEeceEECCCC
Q psy17795 395 ASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNS 447 (523)
Q Consensus 395 ~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~s~Ig~~~~Ig~~~~I~~~iIg~~~ 447 (523)
..+.+++.| -+++|..++.|+++++|.+|.|+.++.||++|.|.++-+.+..
T Consensus 274 ~~~~~~~~V-inSil~~~~~vg~~svIe~s~l~~~~~IG~~cIisGv~~~~~~ 325 (414)
T PF07959_consen 274 SDSEASSCV-INSILEGGVSVGPGSVIEHSHLGGPWSIGSNCIISGVDINSWS 325 (414)
T ss_pred cccCCCeeE-EEeEecCCceECCCCEEEeeecCCCCEECCCCEEECCcccccc
Confidence 445666666 6899999999999999999999999999999999988776654
No 267
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=89.19 E-value=0.4 Score=44.24 Aligned_cols=35 Identities=14% Similarity=0.310 Sum_probs=30.6
Q ss_pred CCcccceeCC--cchHHHHHHHHhcCCCccEEEEEccCC
Q psy17795 116 SPKPLFPVAG--LPMIQHHIEACVQVPNLKEIIILGYYP 152 (523)
Q Consensus 116 ~pK~ll~i~g--~pli~~~l~~~~~~~g~~~i~vv~~~~ 152 (523)
.+|+|++++| +|+|+|+++.+.. .+++++|+++..
T Consensus 3 ~dK~ll~~~g~~~~ll~~~~~~l~~--~~~~iivv~~~~ 39 (178)
T PRK00576 3 RDKATLPLPGGTTTLVEHVVGIVGQ--RCAPVFVMAAPG 39 (178)
T ss_pred CCCEeeEeCCCCcCHHHHHHHHHhh--cCCEEEEECCCC
Confidence 3899999999 9999999998873 689999998753
No 268
>KOG2388|consensus
Probab=74.53 E-value=5.8 Score=41.94 Aligned_cols=78 Identities=14% Similarity=0.274 Sum_probs=51.5
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeCC---cchHHHHHHHHhcC---------CC--ccEEEEEccCChHHHHHH
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAG---LPMIQHHIEACVQV---------PN--LKEIIILGYYPSADLQKF 159 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~g---~pli~~~l~~~~~~---------~g--~~~i~vv~~~~~~~i~~~ 159 (523)
..++++||| +|||++. .-||.+.+++- +.++++..+.+... .+ |.-++.+...-.+...+|
T Consensus 98 ~a~~llaGg--qgtRLg~---~~pkg~~~~G~~~~~slf~~qae~il~lq~~a~~~~~~~~~I~w~ImtS~~T~e~T~~~ 172 (477)
T KOG2388|consen 98 VAVVLLAGG--QGTRLGS---SGPKGCYPIGLPSGKSLFQIQAERILKLQELASMAVSDGVDIPWYIMTSAFTHEATLEY 172 (477)
T ss_pred ceEEEeccC--ceeeecc---CCCcceeecCCccccchhhhhHHHHHHHHHHHhhhhccCCceEEEEecCCCccHHhHhH
Confidence 558889999 9999998 89999999984 56888776665321 12 222334444455677788
Q ss_pred HHhhhhccCee---EEEEecc
Q psy17795 160 VLDMVQEYKIN---IRYLQEF 177 (523)
Q Consensus 160 l~~~~~~~~~~---i~~~~~~ 177 (523)
+... ..+|+. +++..|.
T Consensus 173 f~~~-~~FGl~~~qv~~f~Q~ 192 (477)
T KOG2388|consen 173 FESH-KYFGLKPEQVTFFQQG 192 (477)
T ss_pred Hhhc-CCCCCChhHeeeeecc
Confidence 8752 345554 6666553
No 269
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=73.37 E-value=6.1 Score=45.98 Aligned_cols=40 Identities=25% Similarity=0.174 Sum_probs=21.1
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCcccceeC------CcchHHHHHHH
Q psy17795 94 WTTNDTTPGPLKGTRFRPLSLDSPKPLFPVA------GLPMIQHHIEA 135 (523)
Q Consensus 94 m~~iila~g~g~g~R~~~lT~~~pK~ll~i~------g~pli~~~l~~ 135 (523)
++.++|-|| |..+|+ |--...-|.|.|+. |.++-++.|+.
T Consensus 92 ~~~lllHaG-G~S~Rl-P~~s~~GK~f~p~P~~~~~~g~~l~~~~l~~ 137 (974)
T PRK13412 92 EKRILLHAG-GQSRRL-PGYAPSGKILTPVPVFRWERGQRLSQNLLSL 137 (974)
T ss_pred ccEEEEecC-CccccC-ccccccccccccCCccccCCCChhHHHHHHH
Confidence 345555555 366666 43344556666665 44555544443
No 270
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=65.16 E-value=18 Score=33.53 Aligned_cols=33 Identities=15% Similarity=0.162 Sum_probs=25.0
Q ss_pred cchHHHHHHHHhcCCCccEEEEEccCChHHHHHHHH
Q psy17795 126 LPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVL 161 (523)
Q Consensus 126 ~pli~~~l~~~~~~~g~~~i~vv~~~~~~~i~~~l~ 161 (523)
+|||.|+++.+.+. ++++++++++. +++.++..
T Consensus 30 ~~ll~~~l~~l~~~-~~~~vvvv~~~--~~~~~~~~ 62 (195)
T TIGR03552 30 LAMLRDVITALRGA-GAGAVLVVSPD--PALLEAAR 62 (195)
T ss_pred HHHHHHHHHHHHhc-CCCCEEEECCC--HHHHHHHH
Confidence 69999999999986 67888888874 34555443
No 271
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=56.94 E-value=28 Score=28.71 Aligned_cols=21 Identities=19% Similarity=0.253 Sum_probs=11.0
Q ss_pred CCEECCCCEEeceEECCCCEE
Q psy17795 429 GASIGNHSLVLNSIVGRNSKV 449 (523)
Q Consensus 429 ~~~Ig~~~~I~~~iIg~~~~I 449 (523)
...|+.++.|.+.+-.+.+.|
T Consensus 36 ~v~i~~~~~v~G~i~~~~~~i 56 (101)
T PF04519_consen 36 KVKIGGNGEVKGDIKADDVII 56 (101)
T ss_pred EEEEcCCCEEEEEEEEeEEEE
Confidence 555666666554444444444
No 272
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=55.44 E-value=1e+02 Score=25.65 Aligned_cols=41 Identities=12% Similarity=0.213 Sum_probs=29.8
Q ss_pred eeCC-cchHHHHHHHHhcCCC--ccEEEEEccCChHHHHHHHHhh
Q psy17795 122 PVAG-LPMIQHHIEACVQVPN--LKEIIILGYYPSADLQKFVLDM 163 (523)
Q Consensus 122 ~i~g-~pli~~~l~~~~~~~g--~~~i~vv~~~~~~~i~~~l~~~ 163 (523)
|..| .+++.++++.+.+. . ..+++|+.+...+...+.+.+.
T Consensus 4 ~~~~~~~~l~~~l~s~~~~-~~~~~~i~i~~~~~~~~~~~~~~~~ 47 (156)
T cd00761 4 PAYNEEPYLERCLESLLAQ-TYPNFEVIVVDDGSTDGTLEILEEY 47 (156)
T ss_pred eecCcHHHHHHHHHHHHhC-CccceEEEEEeCCCCccHHHHHHHH
Confidence 4444 59999999999886 5 6688888777555666666653
No 273
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=50.21 E-value=1.1e+02 Score=26.28 Aligned_cols=100 Identities=14% Similarity=0.122 Sum_probs=53.7
Q ss_pred ceeCCc-chHHHHHHHHhcC-CCccEEEEEccCChHHHHHHHHhhhhccCeeEEEEecccccchhhhhcccccccccCCC
Q psy17795 121 FPVAGL-PMIQHHIEACVQV-PNLKEIIILGYYPSADLQKFVLDMVQEYKINIRYLQEFWDIIHQQICISLYWTWYRNTR 198 (523)
Q Consensus 121 l~i~g~-pli~~~l~~~~~~-~g~~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~g~~ 198 (523)
+|.-++ ..|..+|+.+.+. ....+|+|+-+...+...+.+.+..+ .+..++++..++..|
T Consensus 4 ip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~-~~~~i~~i~~~~n~g----------------- 65 (169)
T PF00535_consen 4 IPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAE-SDPNIRYIRNPENLG----------------- 65 (169)
T ss_dssp EEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHC-CSTTEEEEEHCCCSH-----------------
T ss_pred EEeeCCHHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccc-ccccccccccccccc-----------------
Confidence 445554 7788888877653 23456777655444455555655322 345677887765555
Q ss_pred chhHHH--HhhcccCCcceEEEEc---cc-hHH---HHHHHHhcCCcceEEEEE
Q psy17795 199 STYGIY--RNSLHWVQEAVYFTLE---IR-SDV---VILMHSLYSMAILVTVMA 243 (523)
Q Consensus 199 ta~al~--~~~i~~~~d~~~Lvl~---i~-~D~---l~~~h~~~~~~~~~tv~~ 243 (523)
.+.+.. .+... .+. ++++. .. -+. +++.+.+.+ .++.+..
T Consensus 66 ~~~~~n~~~~~a~--~~~-i~~ld~D~~~~~~~l~~l~~~~~~~~--~~~~~~~ 114 (169)
T PF00535_consen 66 FSAARNRGIKHAK--GEY-ILFLDDDDIISPDWLEELVEALEKNP--PDVVIGS 114 (169)
T ss_dssp HHHHHHHHHHH----SSE-EEEEETTEEE-TTHHHHHHHHHHHCT--TEEEEEE
T ss_pred ccccccccccccc--eeE-EEEeCCCceEcHHHHHHHHHHHHhCC--CcEEEEE
Confidence 444554 33333 245 56655 22 232 677777755 5544443
No 274
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=38.00 E-value=1.8e+02 Score=25.94 Aligned_cols=17 Identities=18% Similarity=0.155 Sum_probs=7.6
Q ss_pred eEECCCCEECCCcEEcC
Q psy17795 441 SIVGRNSKVGNWSRVEG 457 (523)
Q Consensus 441 ~iIg~~~~Ig~~~~i~~ 457 (523)
...-+.+.|..++.+.+
T Consensus 85 i~~a~~Vei~~~g~v~G 101 (146)
T COG1664 85 ILAAERVELYPGGRVIG 101 (146)
T ss_pred EEEeeEEEEcCCcEEee
Confidence 33334444444444433
No 275
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=33.36 E-value=99 Score=27.63 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=18.0
Q ss_pred eEECCCCEECCCCEEeceEECCCCEECCCcEEcC
Q psy17795 424 SIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEG 457 (523)
Q Consensus 424 s~Ig~~~~Ig~~~~I~~~iIg~~~~Ig~~~~i~~ 457 (523)
...-+.+.|...+.+.+-+=.+...|..|+.+.|
T Consensus 85 i~~a~~Vei~~~g~v~GdI~~~~i~v~~Ga~f~G 118 (146)
T COG1664 85 ILAAERVELYPGGRVIGDITTKEITVEEGAIFEG 118 (146)
T ss_pred EEEeeEEEEcCCcEEeeeecccEEEEccCCEEEe
Confidence 3334455555555555444455555666665544
No 276
>cd06903 lectin_EMP46_EMP47 EMP46 and EMP47 type 1 transmembrane proteins, N-terminal lectin domain. EMP46 and EMP47, N-terminal carbohydrate recognition domain. EMP46 and EMP47 are fungal type-I transmembrane proteins that cycle between the endoplasmic reticulum and the golgi apparatus and are thought to function as cargo receptors that transport newly synthesized glycoproteins. EMP47 is a receptor for EMP46 responsible for the selective transport of EMP46 by forming hetero-oligomerization between the two proteins. EMP46 and EMP47 have an N-terminal lectin-like carbohydrate recognition domain (represented by this alignment model) as well as a C-terminal transmembrane domain. EMP46 and EMP47 are 45% sequence-identical to one another and have sequence homology to a class of intracellular lectins defined by ERGIC-53 and VIP36. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat s
Probab=30.97 E-value=1e+02 Score=29.43 Aligned_cols=35 Identities=17% Similarity=0.414 Sum_probs=27.1
Q ss_pred eeeccCCCccEEEEEEEecCCeEEEEEecCceEEEE
Q psy17795 10 LKLKMTDDNARYSMKYDHKNGYLKLKMTDDNVCLIY 45 (523)
Q Consensus 10 ~~~~~~p~~~r~~~k~~~~~~~~~~k~t~~~~~~~~ 45 (523)
.+.++.+..+|..++|.+.++.|.|-| |++.|.+.
T Consensus 145 ~~~rn~~~p~~iri~Y~~~~~~l~v~v-d~~~Cf~~ 179 (215)
T cd06903 145 FAYQDSGVPSTIRLSYDALNSLFKVQV-DNRLCFQT 179 (215)
T ss_pred EeccCCCCCEEEEEEEECCCCEEEEEE-CCCEEEec
Confidence 444566777889999998878888887 67888765
No 277
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=28.67 E-value=92 Score=25.52 Aligned_cols=10 Identities=30% Similarity=0.302 Sum_probs=4.0
Q ss_pred CEECCCcEEc
Q psy17795 447 SKVGNWSRVE 456 (523)
Q Consensus 447 ~~Ig~~~~i~ 456 (523)
+.|...+.+.
T Consensus 70 v~i~~~~~v~ 79 (101)
T PF04519_consen 70 VEIYGTARVE 79 (101)
T ss_pred EEEeCCEEEE
Confidence 3344444443
No 278
>KOG1604|consensus
Probab=27.21 E-value=90 Score=31.79 Aligned_cols=35 Identities=17% Similarity=0.168 Sum_probs=32.5
Q ss_pred cCCCccEEEEEEEecCCeEEEEEecCceEEEEEcc
Q psy17795 14 MTDDNARYSMKYDHKNGYLKLKMTDDNVCLIYKTE 48 (523)
Q Consensus 14 ~~p~~~r~~~k~~~~~~~~~~k~t~~~~~~~~~~~ 48 (523)
..|.+.|++.|.-|.+..+.|-|.-+.-|+||-|-
T Consensus 260 ~~~~~l~~v~k~~hp~Sgr~lEv~TnqPgvqfYTg 294 (353)
T KOG1604|consen 260 VPPNKLRKVAKAVHPKSGRKLEVSTNQPGVQFYTG 294 (353)
T ss_pred CCCcccEEEEEEEcCccCcEEEEEeCCCcEEEEec
Confidence 35679999999999999999999999999999993
No 279
>PHA02745 hypothetical protein; Provisional
Probab=25.88 E-value=35 Score=32.65 Aligned_cols=45 Identities=18% Similarity=0.239 Sum_probs=30.8
Q ss_pred eccCCCccEEEEEEEecCCeEEEEEecCceEE-----EEEcccchhhhhH
Q psy17795 12 LKMTDDNARYSMKYDHKNGYLKLKMTDDNVCL-----IYKTEMSQDLKKI 56 (523)
Q Consensus 12 ~~~~p~~~r~~~k~~~~~~~~~~k~t~~~~~~-----~~~~~~~~~~~~~ 56 (523)
-+-||+.+|.++|||.....||==+-...+-+ +|....+.|-|-+
T Consensus 130 PeYDpnDsRWTLKyR~~~pGLVEL~P~SgVYV~~~~L~~C~~~SKDCksL 179 (265)
T PHA02745 130 PEYDPNDSRWTLKHRYPGSGLVELLPHSGVYINAINLSNCKELSKDCKSL 179 (265)
T ss_pred CCCCCCCCcceeeccCCCCCcEEeecCCceEEeHHHHHHHHHHhhhHHHH
Confidence 35689999999999999988876665555543 3334444455444
No 280
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=25.40 E-value=93 Score=26.61 Aligned_cols=24 Identities=17% Similarity=0.340 Sum_probs=19.5
Q ss_pred CcchHHHHHHHHhcCCCccEEEEEc
Q psy17795 125 GLPMIQHHIEACVQVPNLKEIIILG 149 (523)
Q Consensus 125 g~pli~~~l~~~~~~~g~~~i~vv~ 149 (523)
+.|-+...++.+.+. |+++|+|+-
T Consensus 44 ~~P~l~~~l~~l~~~-g~~~v~vvP 67 (126)
T PRK00923 44 NEPTIPEALKKLIGT-GADKIIVVP 67 (126)
T ss_pred CCCCHHHHHHHHHHc-CCCEEEEEc
Confidence 578999999998875 888888763
No 281
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=23.83 E-value=1.6e+02 Score=28.02 Aligned_cols=56 Identities=13% Similarity=0.053 Sum_probs=39.5
Q ss_pred cceeEEEEecCCCCCCcCCCCCC-CCCcccceeCCc--chHHHHHHHHhcCCCccEEEEEccC
Q psy17795 92 CGWTTNDTTPGPLKGTRFRPLSL-DSPKPLFPVAGL--PMIQHHIEACVQVPNLKEIIILGYY 151 (523)
Q Consensus 92 ~~m~~iila~g~g~g~R~~~lT~-~~pK~ll~i~g~--pli~~~l~~~~~~~g~~~i~vv~~~ 151 (523)
...++-|++.. |+|+.||.. .+++.|+-|.|. -=+.|.-..+... .--+++++.+.
T Consensus 97 ~d~~G~vi~~~---G~~vNPLd~v~~~~~LvfiDgdD~~Qv~wak~~~~~~-~~~k~ILv~Gs 155 (209)
T PRK13738 97 RDNEGRVFARQ---GEVVNPLQYVPFNQTLYFINGDDPAQVAWMKRQTPPT-LESKIILVQGS 155 (209)
T ss_pred CCCCCCEEEcC---CCeECcccccCCCceEEEEeCCCHHHHHHHHHhhhcc-CCceEEEECCC
Confidence 34667788884 899999987 589999999985 4445555544443 34567777765
No 282
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=21.24 E-value=81 Score=28.18 Aligned_cols=29 Identities=14% Similarity=0.374 Sum_probs=25.4
Q ss_pred cEEEEEEEecCC------eEEEEEecCceEEEEEc
Q psy17795 19 ARYSMKYDHKNG------YLKLKMTDDNVCLIYKT 47 (523)
Q Consensus 19 ~r~~~k~~~~~~------~~~~k~t~~~~~~~~~~ 47 (523)
.-+.+|+++.+| .=+|-|+++.+|+||--
T Consensus 104 ~gikvK~SsPkge~ERL~NPTvAv~~~~i~IK~HP 138 (149)
T cd07268 104 AGLKVKFSSPKGEGERLPNPTIAFSFGGICIKLHP 138 (149)
T ss_pred CCcEEEecCCCcccccCCCCcEEEEECCEEEEEcC
Confidence 458899999998 77999999999999965
Done!