RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17795
(523 letters)
>gnl|CDD|133050 cd06428, M1P_guanylylT_A_like_N, N-terminal domain of
M1P_guanylyl_A_ like proteins are likely to be a isoform
of GDP-mannose pyrophosphorylase. N-terminal domain of
the M1P-guanylyltransferase A-isoform like proteins:
The proteins of this family are likely to be a isoform
of GDP-mannose pyrophosphorylase. Their sequences are
highly conserved with mannose-1-phosphate
guanyltransferase, but generally about 40-60 bases
longer. GDP-mannose pyrophosphorylase (GTP:
alpha-d-mannose-1-phosphate guanyltransferase) catalyzes
the formation of GDP-d-mannose from GTP and
alpha-d-mannose-1-Phosphate. It contains an N-terminal
catalytic domain that resembles a dinucleotide-binding
Rossmann fold and a C-terminal LbH fold domain.
GDP-d-mannose is the activated form of mannose for
formation of cell wall lipoarabinomannan and various
mannose-containing glycolipids and polysaccharides. The
function of GDP-mannose pyrophosphorylase is essential
for cell wall integrity, morphogenesis and viability.
Repression of GDP-mannose pyrophosphorylase in yeast
leads to phenotypes including cell lysis, defective cell
wall, and failure of polarized growth and cell
separation.
Length = 257
Score = 303 bits (779), Expect = e-101
Identities = 124/281 (44%), Positives = 166/281 (59%), Gaps = 47/281 (16%)
Query: 102 GPLKGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVL 161
GP KGTRFRPLSLD PKPLFPVAG PMI HHIEAC +VP+LKE++++G+YP + F+
Sbjct: 7 GPQKGTRFRPLSLDVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFIS 66
Query: 162 DMVQEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYFTLEI 221
D QE+ + IRYLQE Y+ + G+Y +F +I
Sbjct: 67 DAQQEFNVPIRYLQE-----------------YKPLGTAGGLY-----------HFRDQI 98
Query: 222 RS---DVVILMHS-------LYSM-------AILVTVMATEATRQQSVYYGCIVRKQQTS 264
+ ++++ L + T++ TEA+R+Q+ YGCIV T
Sbjct: 99 LAGNPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEASREQASNYGCIVEDPSTG 158
Query: 265 EISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHI 324
E+ HYVEKP TFVS L+NCGVYLFS +IF I FQS+Q E G+ + I
Sbjct: 159 EVLHYVEKPETFVSDLINCGVYLFSPEIFDTIKKAFQSRQQEAQLGDDNNREGRAE--VI 216
Query: 325 QLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHY 365
+LE++++ PLAGSGK YVY+T +WSQ+K+AGSAIYANR Y
Sbjct: 217 RLEQDVLTPLAGSGKLYVYKTDDFWSQIKTAGSAIYANRLY 257
>gnl|CDD|224129 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase
involved in lipopolysaccharide biosynthesis/translation
initiation factor 2B, gamma/epsilon subunits
(eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis,
outer membrane / Translation, ribosomal structure and
biogenesis].
Length = 358
Score = 152 bits (386), Expect = 1e-41
Identities = 89/364 (24%), Positives = 149/364 (40%), Gaps = 67/364 (18%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMV 164
GTR RPL+ D PKPL P+AG P+I++ +EA ++EI+++ Y ++++ D
Sbjct: 11 YGTRLRPLTDDRPKPLLPIAGKPLIEYVLEALAAA-GVEEIVLVVGYLGEQIEEYFGDG- 68
Query: 165 QEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEA--------VY 216
+ + I Y+ E + T G +N+L + V
Sbjct: 69 EGLGVRITYVVE------------------KEPLGTAGALKNALDLLGGDDFLVLNGDVL 110
Query: 217 FTLEIRSDVVILMH-SLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPST 275
L++ ++ H ++A + + + +G + + + EKP
Sbjct: 111 TDLDLSE--LLEFHKKKGALATIALTRVLDPSE-----FGVVETDDGDGRVVEFREKPGP 163
Query: 276 FV--STLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMP 333
S L+N G+Y+F ++F I G+ DF E+E++
Sbjct: 164 EEPPSNLINAGIYIFDPEVFDYIEK-----------------GERFDF-----EEELLPA 201
Query: 334 LAGSGKA-YVYQTSKWWSQLKSAGSAIYANRHYLQLYKTRHPERLQCSSQCKT-----IG 387
LA G+ Y Y +W + + + AN L + P IG
Sbjct: 202 LAAKGEDVYGYVFEGYWLDIGTPEDLLEANE-LLLRGDGKSPLGPIEEPVVIIRSAYIIG 260
Query: 388 DVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNS 447
V I A + P A++GP I +G IG GV IK SII+ IG+ S + +SI+G N
Sbjct: 261 PVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGENC 320
Query: 448 KVGN 451
K+G
Sbjct: 321 KIGA 324
>gnl|CDD|133024 cd04181, NTP_transferase, NTP_transferases catalyze the transfer of
nucleotides onto phosphosugars. Nucleotidyltransferases
transfer nucleotides onto phosphosugars. The enzyme
family includes Alpha-D-Glucose-1-Phosphate
Cytidylyltransferase, Mannose-1-phosphate
guanyltransferase, and Glucose-1-phosphate
thymidylyltransferase. The products are activated sugars
that are precursors for synthesis of lipopolysaccharide,
glycolipids and polysaccharides.
Length = 217
Score = 93.8 bits (234), Expect = 6e-22
Identities = 57/253 (22%), Positives = 97/253 (38%), Gaps = 55/253 (21%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMV 164
KGTR RPL+ PKPL P+AG P++++ IE + + EII++ Y ++++ D
Sbjct: 8 KGTRLRPLTDTRPKPLLPIAGKPILEYIIERLARA-GIDEIILVVGYLGEQIEEYFGDG- 65
Query: 165 QEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEA--------VY 216
++ +NI Y+ + T G RN+ ++ + V
Sbjct: 66 SKFGVNIEYVVQ------------------EEPLGTAGAVRNAEDFLGDDDFLVVNGDVL 107
Query: 217 FTLEIRSDVVILMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTF 276
L++ + I V + E + YG + ++ +VEKP+
Sbjct: 108 TDLDLSELLRFHREKGADATIAVKEV--EDPSR----YGVVELDDD-GRVTRFVEKPTLP 160
Query: 277 VSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAG 336
S L N G+Y+F +I I + +DE + I L
Sbjct: 161 ESNLANAGIYIFEPEILDYIPEILPRGEDE--------------------LTDAIPLLIE 200
Query: 337 SGKAYVYQTSKWW 349
GK Y Y +W
Sbjct: 201 EGKVYGYPVDGYW 213
>gnl|CDD|100062 cd05824, LbH_M1P_guanylylT_C, Mannose-1-phosphate
guanylyltransferase, C-terminal Left-handed parallel
beta helix (LbH) domain: Mannose-1-phosphate
guanylyltransferase is also known as GDP-mannose
pyrophosphorylase. It catalyzes the synthesis of
GDP-mannose from GTP and mannose-1-phosphate, and is
involved in the maintenance of cell wall integrity and
glycosylation. Similar to ADP-glucose pyrophosphorylase,
it contains an N-terminal catalytic domain that
resembles a dinucleotide-binding Rossmann fold and a
C-terminal LbH fold domain, presumably with 4 turns,
each containing three imperfect tandem repeats of a
hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Proteins containing hexapeptide repeats are often
enzymes showing acyltransferase activity.
Length = 80
Score = 82.6 bits (204), Expect = 2e-19
Identities = 37/106 (34%), Positives = 52/106 (49%), Gaps = 29/106 (27%)
Query: 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVG 450
I SA + TA +GPNV I IG GVR++ +IL +++ +HS V +SIVG NS VG
Sbjct: 2 IDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTVG 61
Query: 451 NWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTV 496
W+R+E +T+LGD VT+
Sbjct: 62 RWTRLEN-----------------------------VTVLGDDVTI 78
>gnl|CDD|233311 TIGR01208, rmlA_long, glucose-1-phosphate thymidylylransferase,
long form. The family of known and putative
glucose-1-phosphate thymidyltransferase (also called
dTDP-glucose synthase) shows a deep split into a short
form (see TIGR01207) and a long form described by this
model. The homotetrameric short form is found in
numerous bacterial species that incorporate
dTDP-L-rhamnose, which it helps synthesize, into the
cell wall. It is subject to feedback inhibition. This
form, in contrast, is found in many species for which it
serves as a sugar-activating enzyme for antibiotic
biosynthesis and or other, unknown pathways, and in
which dTDP-L-rhamnose is not necessarily produced.
Alternate name: dTDP-D-glucose synthase.
Length = 353
Score = 78.2 bits (193), Expect = 9e-16
Identities = 89/393 (22%), Positives = 150/393 (38%), Gaps = 90/393 (22%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEI-IILGYYPSADLQKFVLDM 163
KGTR RPL+ PK L PVA P++Q+ IE + + +I I++G ++++ V +
Sbjct: 9 KGTRLRPLTFTRPKQLIPVANKPILQYAIEDLAEA-GITDIGIVVGPVTGEEIKEIVGEG 67
Query: 164 VQEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQE---AVY---- 216
+ + I Y I Q + L + +Y + ++ + VY
Sbjct: 68 ER-FGAKITY-------IVQGEPLGL----------AHAVYT-ARDFLGDDDFVVYLGDN 108
Query: 217 -FTLEIRSDVVILMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPST 275
I V Y IL+T + + T +G V + I VEKP
Sbjct: 109 LIQDGISRFVKSFEEKDYDALILLTKVR-DPTA-----FGVAVLEDG-KRILKLVEKPKE 161
Query: 276 FVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLA 335
S L G+Y+F IF+ I + S + E + TD I L
Sbjct: 162 PPSNLAVVGLYMFRPLIFEAIKNIKPSWRGEL---------EITD---------AIQWLI 203
Query: 336 GSGKAYVYQTSK-WWSQLKSAGSAIYANRHYLQLYKTRHPERLQCSSQCKTIGDVYIHSS 394
G WW + ANR L + E + K G V +
Sbjct: 204 EKGYKVGGSKVTGWWKDTGKPEDLLDANRLILDEVE---REVQGVDDESKIRGRVVVGEG 260
Query: 395 AS-----VHPTAIVGPNVSIDDGAVIGP------GVRIKE-----SIILQGASI-GNHSL 437
A + A++G + I++ + IGP GV I++ SI+L + I G +
Sbjct: 261 AKIVNSVIRGPAVIGEDCIIEN-SYIGPYTSIGEGVVIRDAEVEHSIVLDESVIEGVQAR 319
Query: 438 VLNSIVGRNSKV--------------GNWSRVE 456
+++S++G+ ++ G++S+VE
Sbjct: 320 IVDSVIGKKVRIKGNRRRPGDLRLTIGDYSQVE 352
>gnl|CDD|215940 pfam00483, NTP_transferase, Nucleotidyl transferase. This family
includes a wide range of enzymes which transfer
nucleotides onto phosphosugars.
Length = 247
Score = 75.7 bits (187), Expect = 2e-15
Identities = 38/208 (18%), Positives = 69/208 (33%), Gaps = 39/208 (18%)
Query: 105 KGTRFRPLSLDSPKPLFPVAG-LPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDM 163
GTR PL+ KPL PV PMIQ+ + + + I+I + + + D
Sbjct: 9 SGTRLWPLTRTLAKPLVPVLDKYPMIQYTLSRLMNAGIREPIVICTQEHRFLVAEQLGDG 68
Query: 164 VQEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYG-IYRNSLHWVQEAVYFTLEIR 222
++ + + Y + R T + + + L +
Sbjct: 69 -SKFGLQVTYALQ------------------PEPRGTAPAVALAADFLGDDDPELVLVLG 109
Query: 223 SDVVI---LMHSL-----YSMAILVTVMAT---EATRQQSVYYGCIVRKQQTSEISHYVE 271
D + ++ + VT + T YG I + + +VE
Sbjct: 110 GDHIYRMDFEEAVQKARAKAADGTVTFGIVPVEDPTG-----YGVIEF-DENGRVIRFVE 163
Query: 272 KPSTFV-STLVNCGVYLFSLDIFQNIAA 298
KP S + G+Y F+ +F +A
Sbjct: 164 KPDLPKASNYASMGIYFFNSGVFLFLAK 191
>gnl|CDD|233299 TIGR01173, glmU, UDP-N-acetylglucosamine
diphosphorylase/glucosamine-1-phosphate
N-acetyltransferase. This protein is a bifunctional
enzyme, GlmU, which catalyzes last two reactions in the
four-step pathway of UDP-N-acetylglucosamine
biosynthesis from fructose-6-phosphate. Its reaction
product is required from peptidoglycan biosynthesis, LPS
biosynthesis in species with LPS, and certain other
processes [Cell envelope, Biosynthesis and degradation
of murein sacculus and peptidoglycan, Cell envelope,
Biosynthesis and degradation of surface polysaccharides
and lipopolysaccharides, Central intermediary
metabolism, Amino sugars].
Length = 451
Score = 70.4 bits (173), Expect = 7e-13
Identities = 80/379 (21%), Positives = 130/379 (34%), Gaps = 88/379 (23%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMV 164
KGTR + D PK L P+AG PM++H I+A + K ++ G+ A+ V +
Sbjct: 10 KGTRMKS---DLPKVLHPLAGKPMLEHVIDAARALGPQKIHVVYGH--GAEQ---VRKAL 61
Query: 165 QEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYFTLEIRSD 224
+N W + +Q G + H V +A+ F L D
Sbjct: 62 ANRDVN-------WVLQAEQ----------------LG----TGHAVLQALPF-LPDDGD 93
Query: 225 VVIL-----------------MHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEIS 267
V++L H + +L + YG I+R+ +
Sbjct: 94 VLVLYGDVPLISAETLERLLEAHRQNGITLLTAKLPDPTG------YGRIIRENDGKVTA 147
Query: 268 HYVEK---PSTFVSTLVNCGVYLFSLDIFQNIAAVF--QSKQDEFYNG---NYMVNGKDT 319
+K +N GVY+F + + Q E+Y V +T
Sbjct: 148 IVEDKDANAEQKAIKEINTGVYVFDGAALKRWLPKLSNNNAQGEYYLTDVIALAVADGET 207
Query: 320 DFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAI---YANRHYLQLYKTRHPER 376
+ + ++ + + QL + A + L R P R
Sbjct: 208 VRAVQVDDSDEVLGV----------NDRL--QLAQLERILQRRIAKKLLLAGVTLRDPAR 255
Query: 377 LQCSSQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHS 436
G V I + P I+ V I D VIGPG IK S+I I +S
Sbjct: 256 FDIR------GTVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYS 309
Query: 437 LVLNSIVGRNSKVGNWSRV 455
++ S +G VG ++R+
Sbjct: 310 VLEGSEIGEGCDVGPFARL 328
Score = 33.0 bits (76), Expect = 0.34
Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 43/131 (32%)
Query: 385 TIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGN--------- 434
I + I S+ + +++ I +G +GP R++ S++ G IGN
Sbjct: 293 VIKNSVIGSNVVIKAYSVL-EGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNARI 351
Query: 435 -------H-SLVLNSIVGRNSKVGNWSRVEGT-PCDPNPNKAFAKMDNPPLFNSNGKLNP 485
H S + ++ +G N +G GT C N +G N
Sbjct: 352 GKGSKAGHLSYLGDAEIGSNVNIG-----AGTITC-----------------NYDGA-NK 388
Query: 486 SITILGDGVTV 496
TI+GDGV +
Sbjct: 389 HKTIIGDGVFI 399
>gnl|CDD|133047 cd06425, M1P_guanylylT_B_like_N, N-terminal domain of the
M1P-guanylyltransferase B-isoform like proteins.
GDP-mannose pyrophosphorylase (GTP:
alpha-d-mannose-1-phosphate guanyltransferase) catalyzes
the formation of GDP-d-mannose from GTP and
alpha-d-mannose-1-Phosphate. It contains an N-terminal
catalytic domain and a C-terminal Lefthanded-beta-Helix
fold domain. GDP-d-mannose is the activated form of
mannose for formation of cell wall lipoarabinomannan and
various mannose-containing glycolipids and
polysaccharides. The function of GDP-mannose
pyrophosphorylase is essential for cell wall integrity,
morphogenesis and viability. Repression of GDP-mannose
pyrophosphorylase in yeast leads to phenotypes, such as
cell lysis, defective cell wall, and failure of
polarized growth and cell separation.
Length = 233
Score = 67.2 bits (165), Expect = 1e-12
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 106 GTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIII-LGYYPSADLQKFVLDMV 164
GTR RPL+L PKPL PMI+H IEA + +KEII+ + Y P D+ F+ +
Sbjct: 11 GTRLRPLTLTVPKPLVEFCNKPMIEHQIEALAKA-GVKEIILAVNYRPE-DMVPFLKEYE 68
Query: 165 QEYKINIRYLQE 176
++ I I + E
Sbjct: 69 KKLGIKITFSIE 80
Score = 49.1 bits (118), Expect = 1e-06
Identities = 26/110 (23%), Positives = 42/110 (38%), Gaps = 25/110 (22%)
Query: 240 TVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAV 299
T++ T+ YG +V + T I +VEKP FV +N G+Y+ + + I
Sbjct: 132 TILVTKVE--DPSKYGVVVHDENTGRIERFVEKPKVFVGNKINAGIYILNPSVLDRI--- 186
Query: 300 FQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWW 349
+EKEI +A G+ Y Y+ +W
Sbjct: 187 ----PLR----------------PTSIEKEIFPKMASEGQLYAYELPGFW 216
>gnl|CDD|234433 TIGR03992, Arch_glmU, UDP-N-acetylglucosamine
diphosphorylase/glucosamine-1-phosphate
N-acetyltransferase. The MJ_1101 protein from
Methanococcus jannaschii has been characterized as the
GlmU enzyme catalyzing the final two steps of UDP-GlcNAc
biosynthesis. Many of the genes identified by this model
are in proximity to the GlmS and GlmM genes and are also
presumed to be GlmU. However, some archaeal genomes
contain multiple closely-related homologs from this
family and it is not clear what the substrate
specificity is for each of them.
Length = 393
Score = 68.8 bits (169), Expect = 2e-12
Identities = 50/204 (24%), Positives = 78/204 (38%), Gaps = 38/204 (18%)
Query: 265 EISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHI 324
++ VEKP S L+N G+YLFS +IF+ + S + E+ + TD
Sbjct: 145 RVTGIVEKPENPPSNLINAGIYLFSPEIFELLEKTKLSPRGEY---------ELTD---- 191
Query: 325 QLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQLYKTRHPERLQCSSQCK 384
+ L GK + +W + + AN L + R ++
Sbjct: 192 -----ALQLLIDEGKVKAVELDGFWLDVGRPWDLLDANEALLDNLEPRIEGTVE--ENVT 244
Query: 385 TIGDV------------------YIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESII 426
G V YI + + P A + P I + IG V IK SII
Sbjct: 245 IKGPVVIGEGAVIRSGTYIEGPVYIGKNCDIGPNAYIRPYTVIGNNVHIGNAVEIKNSII 304
Query: 427 LQGASIGNHSLVLNSIVGRNSKVG 450
++G I + S V +S++G N G
Sbjct: 305 MEGTKIPHLSYVGDSVIGENCNFG 328
Score = 56.8 bits (138), Expect = 1e-08
Identities = 21/46 (45%), Positives = 29/46 (63%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGY 150
KGTR RPL+ PKP+ PVAG P+++H IEA + ++GY
Sbjct: 10 KGTRMRPLTETRPKPMLPVAGKPLLEHIIEALRDAGIDDFVFVVGY 55
>gnl|CDD|234858 PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine
N-acyltransferase; Provisional.
Length = 343
Score = 68.2 bits (168), Expect = 2e-12
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
Query: 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE-SIILQGASIGNHSLVLNSIVGRNSKV 449
IH SA + P+A +G VSI AVIG GV I + +I GA IG+ +G + ++
Sbjct: 103 IHPSAVIDPSAKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGD-----GVKIGADCRL 157
Query: 450 GNWSRV 455
+ V
Sbjct: 158 --HANV 161
Score = 32.0 bits (74), Expect = 0.70
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 385 TIG-DVYIHSSASVHPTAIVGPNVSIDDGAVIG 416
IG D +H++ +++ +G V I GAVIG
Sbjct: 150 KIGADCRLHANVTIYHAVRIGNRVIIHSGAVIG 182
>gnl|CDD|100046 cd03356, LbH_G1P_AT_C_like, Left-handed parallel beta-Helix (LbH)
domain of a group of proteins with similarity to
glucose-1-phosphate adenylyltransferase: Included in
this family are glucose-1-phosphate adenylyltransferase,
mannose-1-phosphate guanylyltransferase, and the
eukaryotic translation initiation factor eIF-2B
subunits, epsilon and gamma. Most members of this family
contains an N-terminal catalytic domain that resembles a
dinucleotide-binding Rossmann fold, followed by a LbH
fold domain with at least 4 turns, each containing three
imperfect tandem repeats of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an
additional domain of unknown function at the C-terminus.
Proteins containing hexapeptide repeats are often
enzymes showing acyltransferase activity.
Length = 79
Score = 61.9 bits (151), Expect = 3e-12
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 390 YIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKV 449
I S + AI+ +V I D IG GV I SI++ +IG +S++++SI+G N+ +
Sbjct: 1 LIGESTVIGENAIIKNSV-IGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVI 59
Query: 450 GNWSRVEG 457
G RV
Sbjct: 60 GENVRVVN 67
Score = 47.2 bits (113), Expect = 4e-07
Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 12/89 (13%)
Query: 409 IDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPNKAF 468
I + VIG IK S+I IG+ + NSI+ N +G S + + N
Sbjct: 2 IGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAV--- 58
Query: 469 AKMDNPPLFNSNGKLNPSITILGDGVTVP 497
N ++ I+GD V V
Sbjct: 59 --------IGENVRVVNL-CIIGDDVVVE 78
Score = 32.2 bits (74), Expect = 0.10
Identities = 9/42 (21%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 387 GDVYIHSSASVHPT-----AIVGPNVSIDDGAVIGPGVRIKE 423
+V I +++ + + A++G NV + + +IG V +++
Sbjct: 38 DNVTIGANSVIVDSIIGDNAVIGENVRVVNLCIIGDDVVVED 79
>gnl|CDD|100060 cd05636, LbH_G1P_TT_C_like, Putative glucose-1-phosphate
thymidylyltransferase, C-terminal Left-handed parallel
beta-Helix (LbH) domain: Proteins in this family show
simlarity to glucose-1-phosphate adenylyltransferases in
that they contain N-terminal catalytic domains that
resemble a dinucleotide-binding Rossmann fold and
C-terminal LbH fold domains. Members in this family are
predicted to be glucose-1-phosphate
thymidylyltransferases, which are involved in the
dTDP-L-rhamnose biosynthetic pathway.
Glucose-1-phosphate thymidylyltransferase catalyzes the
synthesis of deoxy-thymidine di-phosphate
(dTDP)-L-rhamnose, an important component of the cell
wall of many microorganisms. The C-terminal LbH domain
contains multiple turns, each containing three imperfect
tandem repeats of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing
hexapeptide repeats are often enzymes showing
acyltransferase activity.
Length = 163
Score = 57.2 bits (139), Expect = 8e-10
Identities = 20/65 (30%), Positives = 33/65 (50%)
Query: 386 IGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGR 445
G V I + P A + + DG V+G V +K SII+ G + + + V +S++G
Sbjct: 33 EGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGE 92
Query: 446 NSKVG 450
N +G
Sbjct: 93 NVNLG 97
Score = 54.5 bits (132), Expect = 7e-09
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 387 GDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKES-IILQGASIGNHSLVLNSIVGR 445
G V+I A V A + V I G IGP I+ ++ G +GN V NSI+
Sbjct: 16 GPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMD 75
Query: 446 NSKVGNWSRV 455
+KV + + V
Sbjct: 76 GTKVPHLNYV 85
>gnl|CDD|223974 COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl].
Length = 338
Score = 59.2 bits (144), Expect = 1e-09
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 389 VYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE-------SIILQGASIGNHSLVL-N 440
IH +A + PTA +G NVSI VIG GV I E ++I + IG+ +++ N
Sbjct: 100 AGIHPTAVIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPN 159
Query: 441 SIVGRNSKVGN 451
+ N +GN
Sbjct: 160 VTIYHNVVIGN 170
Score = 48.1 bits (115), Expect = 6e-06
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 10/64 (15%)
Query: 388 DVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNS 447
V I + + A++G NV I DG VI P V I IGN N I+ +
Sbjct: 129 GVVIGENVVIGAGAVIGENVKIGDGTVIHPNV-----TIYHNVVIGN-----NVIIHSGA 178
Query: 448 KVGN 451
+G
Sbjct: 179 VIGA 182
Score = 46.1 bits (110), Expect = 3e-05
Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 20/87 (22%)
Query: 385 TIGD-VYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKES--------------IILQG 429
IGD IH + +++ ++G NV I GAVIG II
Sbjct: 149 KIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYAGTAIGWVKIPQIGRVIIGDD 208
Query: 430 ASIG-----NHSLVLNSIVGRNSKVGN 451
IG + + ++++G K+ N
Sbjct: 209 VEIGANTTIDRGALDDTVIGEGVKIDN 235
Score = 44.2 bits (105), Expect = 1e-04
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 395 ASVHPTAIVGPNVSIDDGAVIGPGVRI-KESIILQGASIGNHSLVL-NSIVGRNSKVGNW 452
A +HPTA+ ID A IG V I +I G IG + ++ +++G N K+G+
Sbjct: 100 AGIHPTAV------IDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDG 153
Query: 453 SRVEG 457
+ +
Sbjct: 154 TVIHP 158
Score = 30.3 bits (69), Expect = 2.5
Identities = 26/109 (23%), Positives = 36/109 (33%), Gaps = 35/109 (32%)
Query: 402 IVGPNVSIDDGAVIGPGVRIKE-SIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPC 460
++G V ID+ IG VRI E II I +G+ +G +
Sbjct: 226 VIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGS-----VKIGKYVIIGGQVGI----- 275
Query: 461 DPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLP 509
G L +GDGVT+ V+ SI P
Sbjct: 276 -------------------AGHLE-----IGDGVTIGARSGVMASITEP 300
>gnl|CDD|133044 cd06422, NTP_transferase_like_1, NTP_transferase_like_1 is a member
of the nucleotidyl transferase family. This is a
subfamily of nucleotidyl transferases. Nucleotidyl
transferases transfer nucleotides onto phosphosugars.
The activated sugars are precursors for synthesis of
lipopolysaccharide, glycolipids and polysaccharides.
Other subfamilies of nucleotidyl transferases include
Alpha-D-Glucose-1-Phosphate Cytidylyltransferase,
Mannose-1-phosphate guanyltransferase, and
Glucose-1-phosphate thymidylyltransferase.
Length = 221
Score = 58.0 bits (141), Expect = 1e-09
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 106 GTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIII 147
GTR RPL+ PKPL PVAG P+I H ++ ++ I++
Sbjct: 10 GTRMRPLTDTRPKPLVPVAGKPLIDHALDRLAAA-GIRRIVV 50
>gnl|CDD|233720 TIGR02091, glgC, glucose-1-phosphate adenylyltransferase. This
enzyme, glucose-1-phosphate adenylyltransferase, is also
called ADP-glucose pyrophosphorylase. The plant form is
an alpha2,beta2 heterodimer, allosterically regulated in
plants. Both subunits are homologous and included in
this model. In bacteria, both homomeric forms of GlgC
and more active heterodimers of GlgC and GlgD have been
described. This model describes the GlgC subunit only.
This enzyme appears in variants of glycogen synthesis
pathways that use ADP-glucose, rather than UDP-glucose
as in animals [Energy metabolism, Biosynthesis and
degradation of polysaccharides].
Length = 361
Score = 58.8 bits (143), Expect = 2e-09
Identities = 77/386 (19%), Positives = 144/386 (37%), Gaps = 77/386 (19%)
Query: 105 KGTRFRPLSLDSPKPLFPVAG-LPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDM 163
+G+R PL+ KP P G +I + C+ ++ I +L Y S L + +
Sbjct: 8 RGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCIN-SGIRRIGVLTQYKSHSLNRHI--- 63
Query: 164 VQEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYFTLEIRS 223
+ + + ++ F ++ Q S WY+ T +Y+N + L +
Sbjct: 64 QRGWDFD-GFIDGFVTLLPAQQRESGT-DWYQGTAD--AVYQNLDLIEDYDPEYVLILSG 119
Query: 224 DVVILMHSLYSM---AIL---------VTVMATEATRQQSVYYGCIVRKQQTSE---ISH 268
D H +Y M +L VT+ R+++ +G + Q E I
Sbjct: 120 D-----H-IYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVM----QVDEDGRIVD 169
Query: 269 YVEKPSTFVST-------LVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDF 321
+ EKP+ S L + G+Y+F D+ + + + + ++ DF
Sbjct: 170 FEEKPANPPSIPGMPDFALASMGIYIFDKDVLKELL----EEDADDPESSH-------DF 218
Query: 322 NHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQ------LYKTRHPE 375
K+II G Y S +W + + S AN + LY + P
Sbjct: 219 G-----KDIIPRALEEGSVQAYLFSGYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPI 273
Query: 376 RLQCSSQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAV----------IGPGVRIKESI 425
+ ++ S A V ++V I V IG G +++S+
Sbjct: 274 Y---TYNEFLPPAKFVDSDAQVV-DSLVSEGCIISGATVSHSVLGIRVRIGSGSTVEDSV 329
Query: 426 ILQGASIGNHSLVLNSIVGRNSKVGN 451
I+ IG +++ N+I+ +N ++G
Sbjct: 330 IMGDVGIGRGAVIRNAIIDKNVRIGE 355
>gnl|CDD|133032 cd04189, G1P_TT_long, G1P_TT_long represents the long form of
glucose-1-phosphate thymidylyltransferase. This family
is the long form of Glucose-1-phosphate
thymidylyltransferase. Glucose-1-phosphate
thymidylyltransferase catalyses the formation of
dTDP-glucose, from dTTP and glucose 1-phosphate. It is
the first enzyme in the biosynthesis of dTDP-L-rhamnose,
a cell wall constituent and a feedback inhibitor of the
enzyme.There are two forms of Glucose-1-phosphate
thymidylyltransferase in bacteria and archeae; short
form and long form. The long form, which has an extra
50 amino acids c-terminal, is found in many species for
which it serves as a sugar-activating enzyme for
antibiotic biosynthesis and or other, unknown pathways,
and in which dTDP-L-rhamnose is not necessarily
produced.The long from enzymes also have a left-handed
parallel helix domain at the c-terminus, whereas, th
eshort form enzymes do not have this domain. The
homotetrameric, feedback inhibited short form is found
in numerous bacterial species that produce
dTDP-L-rhamnose.
Length = 236
Score = 55.7 bits (135), Expect = 8e-09
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 5/74 (6%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEI-IILGYYPSADLQKFVLDM 163
KGTR RPL+ PK L PVAG P+IQ+ IE + +++I I++G ++++ + D
Sbjct: 10 KGTRLRPLTYTRPKQLIPVAGKPIIQYAIEDLREA-GIEDIGIVVGPTG-EEIKEALGD- 66
Query: 164 VQEYKINIRY-LQE 176
+ + I Y LQE
Sbjct: 67 GSRFGVRITYILQE 80
Score = 39.1 bits (92), Expect = 0.003
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 254 YGCIVRKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDE 306
+G V I VEKP S L GVY F+ IF I+ + S + E
Sbjct: 141 FGVAVVDD--GRIVRLVEKPKEPPSNLALVGVYAFTPAIFDAISRLKPSWRGE 191
>gnl|CDD|224128 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase
(contains nucleotidyltransferase and I-patch
acetyltransferase domains) [Cell envelope biogenesis,
outer membrane].
Length = 460
Score = 57.2 bits (139), Expect = 9e-09
Identities = 27/69 (39%), Positives = 38/69 (55%)
Query: 387 GDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRN 446
GDV I + P I+ N I D VIGPG IK+S+I A I +S++ S VG
Sbjct: 267 GDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEG 326
Query: 447 SKVGNWSRV 455
+ VG ++R+
Sbjct: 327 ATVGPFARL 335
Score = 40.2 bits (95), Expect = 0.002
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGY 150
KGTR + D PK L PVAG PM++H I+A + ++++G+
Sbjct: 12 KGTRMKS---DLPKVLHPVAGKPMLEHVIDAARALGPDDIVVVVGH 54
Score = 39.9 bits (94), Expect = 0.003
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 400 TAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEG 457
T + +V I VI P V ++ ++I IG S++ +S++G N+ + +S +EG
Sbjct: 262 TTYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEG 320
Score = 31.8 bits (73), Expect = 0.96
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 17/83 (20%)
Query: 385 TIGDVYIHSSASVHPT-----------AIVGPNVSIDDGAVIGPGVRI------KESIIL 427
I D I +A + A VGP + GAV+G V I K++ I
Sbjct: 300 VIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVEVKKATIG 359
Query: 428 QGASIGNHSLVLNSIVGRNSKVG 450
+G+ G+ + + ++ +G N +G
Sbjct: 360 KGSKAGHLTYLGDAEIGENVNIG 382
>gnl|CDD|233599 TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine
N-acyltransferase. This model describes LpxD, an enzyme
for the biosynthesis of lipid A, a component
oflipopolysaccharide (LPS) in the outer membrane outer
leaflet of most Gram-negative bacteria. Some differences
are found between lipid A of different species. This
protein represents the third step from
UDP-N-acetyl-D-glucosamine. The group added at this step
generally is 14:0(3-OH) (myristate) but may vary; in
Aquifex it appears to be 16:0(3-OH) (palmitate) [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides].
Length = 324
Score = 53.8 bits (130), Expect = 9e-08
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
Query: 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKES-IILQGASIGNHSLVLNSIVGRNSKV 449
IH +A V P+A +G V+I VIG GV I E+ II G IG+ + ++G S++
Sbjct: 94 IHPTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGD-----DVVIGDGSRI 148
Query: 450 GNWSRV 455
V
Sbjct: 149 --HPNV 152
Score = 42.7 bits (101), Expect = 3e-04
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 395 ASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVL-NSIVGRNSKVGNWS 453
A +HPTA+V P+ I DG IGP V +I G IG + ++ ++G + +G+ S
Sbjct: 92 AGIHPTAVVDPSAKIGDGVTIGPNV-----VIGAGVEIGENVIIGPGVVIGDDVVIGDGS 146
Query: 454 RV 455
R+
Sbjct: 147 RI 148
Score = 37.7 bits (88), Expect = 0.011
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 385 TIGD-VYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKES-------IILQGASIG 433
IG V I + + P ++G +V I DG+ I P V I E II GA IG
Sbjct: 117 VIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVIG 173
Score = 34.6 bits (80), Expect = 0.11
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 385 TIGD-VYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRI-KESIILQGASIGNHSLVLNSI 442
TIG V I + + I+GP V I D VIG G RI +I + +G + ++ +
Sbjct: 111 TIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGA 170
Query: 443 V 443
V
Sbjct: 171 V 171
>gnl|CDD|100044 cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosphate
uridyltransferase (GlmU), C-terminal left-handed
beta-helix (LbH) acetyltransferase domain: GlmU is also
known as UDP-N-acetylglucosamine pyrophosphorylase. It
is a bifunctional bacterial enzyme that catalyzes two
consecutive steps in the formation of
UDP-N-acetylglucosamine (UDP-GlcNAc), an important
precursor in bacterial cell wall formation. The two
enzymatic activities, uridyltransferase and
acetyltransferase, are carried out by two independent
domains. The C-terminal LbH domain possesses the
acetyltransferase activity. It catalyzes the
CoA-dependent acetylation of GlcN-1-phosphate to
GlcNAc-1-phosphate. The LbH domain contains 10 turns,
each containing three imperfect tandem repeats of a
hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The
acetyltransferase active site is located at the
interface between two subunits of the active LbH trimer.
Length = 193
Score = 51.7 bits (125), Expect = 1e-07
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 389 VYIHSSASVHPTAIVGPNV------SIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSI 442
YI + ++ P V I + VIGP IK+S I G I S++ ++
Sbjct: 10 TYIDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAV 69
Query: 443 VGRNSKVGNWSRV 455
+G + VG ++ +
Sbjct: 70 IGNGATVGPFAHL 82
Score = 47.4 bits (114), Expect = 3e-06
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Query: 389 VYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLV-----L--NS 441
V + + ++GPN I D IG GV IK S +++GA IGN + V L +
Sbjct: 28 VILEGKTVIGEDCVIGPNCVIKDS-TIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGT 86
Query: 442 IVGRNSKVGN 451
++G +GN
Sbjct: 87 VLGEGVHIGN 96
Score = 38.6 bits (91), Expect = 0.003
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 397 VHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVE 456
+ +G +V ID G ++ I E IG + ++ +S +G + S +E
Sbjct: 12 IDGDVEIGVDVVIDPGVILEGKTVIGE-----DCVIGPNCVIKDSTIGDGVVIKASSVIE 66
Query: 457 G 457
G
Sbjct: 67 G 67
Score = 36.6 bits (86), Expect = 0.012
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 12/78 (15%)
Query: 385 TIGD-VYIHSS-----ASVHPTAIVGPNVSIDDGAVIGPGVRI------KESIILQGASI 432
TIGD V I +S A + A VGP + G V+G GV I K+S I +G+
Sbjct: 52 TIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKKSTIGEGSKA 111
Query: 433 GNHSLVLNSIVGRNSKVG 450
+ S + ++ +G +G
Sbjct: 112 NHLSYLGDAEIGEGVNIG 129
>gnl|CDD|235390 PRK05289, PRK05289, UDP-N-acetylglucosamine acyltransferase;
Provisional.
Length = 262
Score = 52.4 bits (127), Expect = 1e-07
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 6/60 (10%)
Query: 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVL-NSIVGRNSKV 449
IH +A V P A +G NV I VIGP V I + G IG+H ++ ++ +G+N+++
Sbjct: 5 IHPTAIVEPGAKIGENVEIGPFCVIGPNVVIGD-----GTVIGSHVVIDGHTTIGKNNRI 59
>gnl|CDD|100050 cd03360, LbH_AT_putative, Putative Acyltransferase (AT),
Left-handed parallel beta-Helix (LbH) domain; This group
is composed of mostly uncharacterized proteins
containing an N-terminal helical subdomain followed by a
LbH domain. The alignment contains 6 turns, each
containing three imperfect tandem repeats of a
hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Proteins containing hexapeptide repeats are often
enzymes showing acyltransferase activity. A few members
are identified as NeuD, a sialic acid (Sia)
O-acetyltransferase that is required for Sia synthesis
and surface polysaccharide sialylation.
Length = 197
Score = 51.3 bits (124), Expect = 2e-07
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 6/56 (10%)
Query: 397 VHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLV-LNSIVGRNSKVGN 451
+HP+A+V P+ I +G VI G +I A IG++ ++ +++G + +G+
Sbjct: 87 IHPSAVVSPSAVIGEGCVIMAGA-----VINPDARIGDNVIINTGAVIGHDCVIGD 137
Score = 46.3 bits (111), Expect = 9e-06
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 389 VYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE-SIILQGASIGNHSLV 438
IH SA V P+A++G I GAVI P RI + II GA IG+ ++
Sbjct: 85 TLIHPSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVI 135
Score = 38.6 bits (91), Expect = 0.003
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 21/89 (23%)
Query: 385 TIGD-VYIHSSASV-H-----------PTAIVGPNVSIDDGAVIGPGVRIKESIILQGAS 431
IGD V I++ A + H P ++ V+I +GA IG G + I+QG +
Sbjct: 116 RIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAG-----ATIIQGVT 170
Query: 432 IGNHSLV-LNSIVGRNSKVGNWSRVEGTP 459
IG +++ ++V ++ V + S V G P
Sbjct: 171 IGAGAIIGAGAVVTKD--VPDGSVVVGNP 197
>gnl|CDD|218605 pfam05486, SRP9-21, Signal recognition particle 9 kDa protein
(SRP9). This family consists of several eukaryotic
SRP9 proteins. SRP9 together with the Alu-homologous
region of 7SL RNA and SRP14 comprise the "Alu domain"
of SRP, which mediates pausing of synthesis of ribosome
associated nascent polypeptides that have been engaged
by the targeting domain of SRP. This family also
contains the homologous fungal SRP21.
Length = 76
Score = 48.0 bits (115), Expect = 2e-07
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 17 DNARYSMKYDH---KNGYLKLKMTDDNV--CLIYKTEMSQDLKKIDNA 59
RYS+KY H G L LK TD + CL YKT +++L ++ +
Sbjct: 20 SKTRYSIKYRHPSASTGKLTLKTTDPHSGICLKYKTNKAKELSRLLSF 67
>gnl|CDD|100043 cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyltransferase
(LpxD): The enzyme catalyzes the transfer of
3-hydroxymyristic acid or 3-hydroxy-arachidic acid,
depending on the organism, from the acyl carrier protein
(ACP) to UDP-3-O-acyl-glucosamine to produce
UDP-2,3-diacyl-GlcNAc. This constitutes the third step
in the lipid A biosynthetic pathway in Gram-negative
bacteria. LpxD is a homotrimer, with each subunit
consisting of a novel combination of an N-terminal
uridine-binding domain, a core lipid-binding left-handed
parallel beta helix (LbH) domain, and a C-terminal
alpha-helical extension. The LbH domain contains 9
turns, each containing three imperfect tandem repeats of
a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Length = 205
Score = 50.9 bits (123), Expect = 2e-07
Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 8/57 (14%)
Query: 385 TIG-DVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE-------SIILQGASIG 433
IG V I + P ++G V I D VI P V I E II GA IG
Sbjct: 15 VIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIG 71
Score = 49.7 bits (120), Expect = 7e-07
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 385 TIG-DVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE-------SIILQGASIGNHS 436
IG +V I +A + ++G V I G VIG GV I + I +G IG+
Sbjct: 3 KIGENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRV 62
Query: 437 LVL-NSIVG 444
++ +++G
Sbjct: 63 IIHSGAVIG 71
Score = 49.3 bits (119), Expect = 8e-07
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 394 SASVHPTAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVL-NSIVGRNSKVGN 451
SA + +GPN I +G VIG GV I +I G IG+ ++ N + +G+
Sbjct: 1 SAKIGENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGD 60
>gnl|CDD|223525 COG0448, GlgC, ADP-glucose pyrophosphorylase [Carbohydrate
transport and metabolism].
Length = 393
Score = 52.3 bits (126), Expect = 4e-07
Identities = 53/246 (21%), Positives = 99/246 (40%), Gaps = 47/246 (19%)
Query: 239 VTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPS--TFVSTLVNCGVYLFSLDIFQNI 296
VTV E R+++ +G ++ + I +VEKP+ ++L + G+Y+F+ D+ + +
Sbjct: 149 VTVAVKEVPREEASRFG-VMNVDENGRIIEFVEKPADGPPSNSLASMGIYIFNTDLLKEL 207
Query: 297 AAVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAG 356
++D + DF K+II L GK Y Y+ S +W + +
Sbjct: 208 L-----EEDAKDPNSS------HDFG-----KDIIPKLLERGKVYAYEFSGYWRDVGTID 251
Query: 357 SAIYANRHYLQ------LY----------KTRHPERLQCSSQCKT---IGDVYIHSSASV 397
S AN L LY K P + S+ G I +
Sbjct: 252 SYYEANMDLLSPQPELNLYDRNWPIYTKNKNLPPAKFVNDSEVSNSLVAGGCIISGTVE- 310
Query: 398 HPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEG 457
+++ V I G+V I+ S+I+ IG +++ +I+ +N +G + G
Sbjct: 311 --NSVLFRGVRIGKGSV------IENSVIMPDVEIGEGAVLRRAIIDKNVVIGEGVVIGG 362
Query: 458 TPCDPN 463
+ +
Sbjct: 363 DKPEED 368
>gnl|CDD|100051 cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This
family is composed of gamma carbonic anhydrase (CA),
Ferripyochelin Binding Protein (FBP), E. coli paaY
protein, and similar proteins. CAs are zinc-containing
enzymes that catalyze the reversible hydration of carbon
dioxide in a two-step mechanism, involving the
nucleophilic attack of a zinc-bound hydroxide ion on
carbon dioxide, followed by the regeneration of the
active site by ionization of the zinc-bound water
molecule and removal of a proton from the active site.
They are ubiquitous enzymes involved in fundamental
processes like photosynthesis, respiration, pH
homeostasis and ion transport. There are three
evolutionary distinct groups - alpha, beta and gamma
carbonic anhydrases - which show no significant sequence
identity or structural similarity. Gamma CAs are
trimeric enzymes with left-handed parallel beta helix
(LbH) structural domain.
Length = 153
Score = 49.3 bits (119), Expect = 4e-07
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 20/91 (21%)
Query: 386 IGDVYIHSSASVHPTA---------IVGPNVSIDDGAV----------IGPGVRIKESII 426
IGDV + +SV A +G +I DG+V IG V + +
Sbjct: 15 IGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAV 74
Query: 427 LQGASIGNHSLV-LNSIVGRNSKVGNWSRVE 456
L G +IG++ L+ + +I+ + +G S V
Sbjct: 75 LHGCTIGDNCLIGMGAIILDGAVIGKGSIVA 105
Score = 33.9 bits (79), Expect = 0.073
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 385 TIG-DVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE-SIILQGASIGNHSLVLNSI 442
T+G +H ++ ++G I DGAVIG G + S++ G I SLV
Sbjct: 68 TVGHGAVLHG-CTIGDNCLIGMGAIILDGAVIGKGSIVAAGSLVPPGKVIPPGSLV---- 122
Query: 443 VGRNSKV 449
G +KV
Sbjct: 123 AGSPAKV 129
>gnl|CDD|133048 cd06426, NTP_transferase_like_2, NTP_trnasferase_like_2 is a member
of the nucleotidyl transferase family. This is a
subfamily of nucleotidyl transferases. Nucleotidyl
transferases transfer nucleotides onto phosphosugars.
The activated sugars are precursors for synthesis of
lipopolysaccharide, glycolipids and polysaccharides.
Other subfamilies of nucleotidyl transferases include
Alpha-D-Glucose-1-Phosphate Cytidylyltransferase,
Mannose-1-phosphate guanyltransferase, and
Glucose-1-phosphate thymidylyltransferase.
Length = 220
Score = 50.2 bits (121), Expect = 5e-07
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 18/80 (22%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIII-LGYYPSADLQKFVLDM 163
KGTR RPL+ ++PKP+ V G P+++ I+ + + I + Y +M
Sbjct: 8 KGTRLRPLTENTPKPMLKVGGKPILETIIDRFIAQ-GFRNFYISVNYLA---------EM 57
Query: 164 VQEY-------KINIRYLQE 176
+++Y +NI Y++E
Sbjct: 58 IEDYFGDGSKFGVNISYVRE 77
>gnl|CDD|100042 cd03351, LbH_UDP-GlcNAc_AT, UDP-N-acetylglucosamine
O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins
in this family catalyze the transfer of
(R)-3-hydroxymyristic acid from its acyl carrier protein
thioester to UDP-GlcNAc. It is the first enzyme in the
lipid A biosynthetic pathway and is also referred to as
LpxA. Lipid A is essential for the growth of Escherichia
coli and related bacteria. It is also essential for
maintaining the integrity of the outer membrane.
UDP-GlcNAc acyltransferase is a homotrimer of
left-handed parallel beta helix (LbH) subunits. Each
subunit contains an N-terminal LbH region with 9 turns,
each containing three imperfect tandem repeats of a
hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X),
and a C-terminal alpha-helical region.
Length = 254
Score = 50.5 bits (122), Expect = 5e-07
Identities = 24/62 (38%), Positives = 28/62 (45%), Gaps = 19/62 (30%)
Query: 391 IHSSASVHPTA------------IVGPNVSIDDGAVIGPGVRI-------KESIILQGAS 431
IH +A V P A ++GPNV I DG VIG V I K + I AS
Sbjct: 2 IHPTAIVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFAS 61
Query: 432 IG 433
IG
Sbjct: 62 IG 63
>gnl|CDD|133014 cd02523, PC_cytidylyltransferase, Phosphocholine
cytidylyltransferases catalyze the synthesis of
CDP-choline. This family contains proteins similar to
prokaryotic phosphocholine (P-cho)
cytidylyltransferases. Phosphocholine (PC)
cytidylyltransferases catalyze the transfer of a
cytidine monophosphate from CTP to phosphocholine to
form CDP-choline. PC is the most abundant phospholipid
in eukaryotic membranes and it is also important in
prokaryotic membranes. For pathogenic prokaryotes, the
cell surface PC facilitates the interaction with host
surface and induces attachment and invasion. In addition
cell wall PC serves as scaffold for a group of
choline-binding proteins that are secreted from the
cells. Phosphocholine (PC) cytidylyltransferase is a key
enzyme in the prokaryotic choline metabolism pathway. It
has been hypothesized to consist of a choline transport
system, a choline kinase, CTP:phosphocholine
cytidylyltransferase, and a choline phosphotransferase
that transfers P-Cho from CDP-Cho to either lipoteichoic
acid or lipopolysaccharide.
Length = 229
Score = 50.3 bits (121), Expect = 6e-07
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIII-LGY 150
+G+R RPL+ D PK L + G P+++ IE + + +I+I GY
Sbjct: 8 RGSRLRPLTEDRPKCLLEINGKPLLERQIETLKEA-GIDDIVIVTGY 53
>gnl|CDD|100038 cd00208, LbetaH, Left-handed parallel beta-Helix (LbetaH or LbH)
domain: The alignment contains 5 turns, each containing
three imperfect tandem repeats of a hexapeptide repeat
motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing
hexapeptide repeats are often enzymes showing
acyltransferase activity, however, some subfamilies in
this hierarchy also show activities related to ion
transport or translation initiation. Many are trimeric
in their active forms.
Length = 78
Score = 46.9 bits (112), Expect = 6e-07
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 385 TIGD-VYIHSSASVHPTAIVGPNVSIDDGAVIG---PGVRIKESIILQGASIGNHSLVL- 439
IG+ V IH A + ++G NV+I GAVIG +II IG ++++
Sbjct: 2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHG 61
Query: 440 NSIVGRNSKVGN 451
+G N+ +G
Sbjct: 62 GVKIGDNAVIGA 73
Score = 35.7 bits (83), Expect = 0.005
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 401 AIVGPNVSIDDGAVIGPGVRI-KESIILQGASIGN--HSLVLN-SIVGRNSKVGNWSRVE 456
+G V I AVI V I I GA IG N +I+G N ++G + +
Sbjct: 1 VFIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIH 60
Query: 457 G 457
G
Sbjct: 61 G 61
>gnl|CDD|224130 COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cell envelope
biogenesis, outer membrane].
Length = 286
Score = 49.9 bits (120), Expect = 1e-06
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEI-IILGYYPSADLQKFVLDM 163
GTR RPL+ PK L PV PMI + +E + +++I I++G ++ + D
Sbjct: 10 SGTRLRPLTRVVPKQLLPVYDKPMIYYPLETLMLA-GIRDILIVVGPEDKPTFKELLGDG 68
Query: 164 VQEYKINIRY 173
++I Y
Sbjct: 69 SDFG-VDITY 77
>gnl|CDD|133001 cd02507, eIF-2B_gamma_N_like, The N-terminal of eIF-2B_gamma_like
is predicted to have glycosyltransferase activity.
N-terminal domain of eEIF-2B epsilon and gamma, subunits
of eukaryotic translation initiators, is a subfamily of
glycosyltranferase 2 and is predicted to have
glycosyltranferase activity. eIF-2B is a guanine
nucleotide-exchange factor which mediates the exchange
of GDP (bound to initiation factor eIF2) for GTP,
generating active eIF2.GTP complex. EIF2B is a complex
multimeric protein consisting of five subunits named
alpha, beta, gamma, delta and epsilon. Subunit epsilon
shares sequence similarity with gamma subunit, and with
a family of bifunctional nucleotide-binding enzymes such
as ADP-glucose pyrophosphorylase, suggesting that
epsilon subunit may play roles in nucleotide binding
activity. In yeast, eIF2B gamma enhances the activity of
eIF2B-epsilon leading to the idea that these subunits
form the catalytic subcomplex.
Length = 216
Score = 48.8 bits (117), Expect = 2e-06
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIIL 148
G+RF PL+ D PK L PVA +P+I + +E + ++E+ ++
Sbjct: 10 FGSRFLPLTSDIPKALLPVANVPLIDYTLEWLEKA-GVEEVFVV 52
>gnl|CDD|234265 TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sialic acid
O-acetyltransferase NeuD family. This family of
proteins includes the characterized NeuD sialic acid
O-acetyltransferase enzymes from E. coli and
Streptococcus agalactiae (group B strep). These two are
quite closely related to one another, so extension of
this annotation to other members of the family in
unsupported without additional independent evidence. The
neuD gene is often observed in close proximity to the
neuABC genes for the biosynthesis of
CMP-N-acetylneuraminic acid (CMP-sialic acid), and NeuD
sequences from these organisms were used to construct
the seed for this model. Nevertheless, there are
numerous instances of sequences identified by this model
which are observed in a different genomic context
(although almost universally in exopolysaccharide
biosynthesis-related loci), as well as in genomes for
which the biosynthesis of sialic acid (SA) is
undemonstrated. Even in the cases where the association
with SA biosynthesis is strong, it is unclear in the
literature whether the biological substrate is SA
iteself, CMP-SA, or a polymer containing SA. Similarly,
it is unclear to what extent the enzyme has a preference
for acetylation at the 7, 8 or 9 positions. In the
absence of evidence of association with SA, members of
this family may be involved with the acetylation of
differring sugar substrates, or possibly the delivery of
alternative acyl groups. The closest related sequences
to this family (and those used to root the phylogenetic
tree constructed to create this model) are believed to
be succinyltransferases involved in lysine biosynthesis.
These proteins contain repeats of the bacterial
transferase hexapeptide (pfam00132), although often
these do not register above the trusted cutoff.
Length = 193
Score = 47.1 bits (113), Expect = 5e-06
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 389 VYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE-SIILQGASIGNHSLV 438
IH SA V P+A +G I GAVI P VRI + II GA + + ++
Sbjct: 79 TLIHPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVI 129
Score = 35.2 bits (82), Expect = 0.040
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 16/86 (18%)
Query: 388 DVYIHSSASVHPTAIVGPNVSIDDGAVIGPG------VRIKE-------SIILQGASIGN 434
DV I + ++ AIV + I D I PG V I E + I+QG +IG
Sbjct: 108 DVRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFIGAGATIIQGVTIGA 167
Query: 435 HSLV-LNSIVGRNSKVGNWSRVEGTP 459
++V ++V ++ G V G P
Sbjct: 168 GAVVGAGAVVTKDIPDG--GVVVGVP 191
Score = 33.3 bits (77), Expect = 0.17
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 387 GDVYIHSSASVHPTAIVGPNVSIDDGAVIGPG 418
G V I + A + V+I GAV+G G
Sbjct: 143 GGVVIGEGVFIGAGATIIQGVTIGAGAVVGAG 174
>gnl|CDD|100056 cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenylyltransferase,
C-terminal Left-handed parallel beta helix (LbH) domain:
Glucose-1-phosphate adenylyltransferase is also known as
ADP-glucose synthase or ADP-glucose pyrophosphorylase.
It catalyzes the first committed and rate-limiting step
in starch biosynthesis in plants and glycogen
biosynthesis in bacteria. It is the enzymatic site for
regulation of storage polysaccharide accumulation in
plants and bacteria. The enzyme is a homotetramer, with
each subunit containing an N-terminal catalytic domain
that resembles a dinucleotide-binding Rossmann fold and
a C-terminal LbH fold domain with at 5 turns, each
containing three imperfect tandem repeats of a
hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
The LbH domain is involved in cooperative allosteric
regulation and oligomerization.
Length = 104
Score = 44.8 bits (107), Expect = 6e-06
Identities = 11/58 (18%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 402 IVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTP 459
++ V +G G +++S+I+ IG ++++ +I+ +N + + + G P
Sbjct: 30 VLFRGV------RVGSGSVVEDSVIMPNVGIGRNAVIRRAIIDKNVVIPDGVVIGGDP 81
Score = 33.6 bits (78), Expect = 0.049
Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 406 NVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPN 463
N + +G +I G ++ S++ +G +G+ S+V +S++ N +G + + D N
Sbjct: 12 NSLVSEGCIISGG-TVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRRAIIDKN 68
Score = 28.2 bits (64), Expect = 3.3
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 13/60 (21%)
Query: 387 GDVYIHSSASVHPTAIVGPNVSIDDGAVIGP--------GVRIKESIILQGASIGNHSLV 438
+V I +A + AI+ NV I DG VIG ++ I++ +G ++
Sbjct: 50 PNVGIGRNAVIR-RAIIDKNVVIPDGVVIGGDPEEDRARFYVTEDGIVV----VGKGMVI 104
>gnl|CDD|223973 COG1043, LpxA, Acyl-[acyl carrier protein].
Length = 260
Score = 46.8 bits (112), Expect = 1e-05
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVL-NSIVGRNSKV 449
IH +A + P A +G +V I +IGP V I + G + +H +V ++ +GRN+++
Sbjct: 6 IHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGD-----GTVLKSHVVVEGHTTIGRNNRI 60
Query: 450 GNWSRVEGTPCD 461
++ + P D
Sbjct: 61 FPFASIGEDPQD 72
>gnl|CDD|100039 cd00710, LbH_gamma_CA, Gamma carbonic anhydrases (CA): Carbonic
anhydrases are zinc-containing enzymes that catalyze the
reversible hydration of carbon dioxide in a two-step
mechanism, involving the nucleophilic attack of a
zinc-bound hydroxide ion on carbon dioxide, followed by
the regeneration of the active site by ionization of the
zinc-bound water molecule and removal of a proton from
the active site. They are ubiquitous enzymes involved in
fundamental processes like photosynthesis, respiration,
pH homeostasis and ion transport. There are three
distinct groups of carbonic anhydrases - alpha, beta
and gamma - which show no significant sequence identity
or structural similarity. Gamma CAs are homotrimeric
enzymes, with each subunit containing a left-handed
parallel beta helix (LbH) structural domain.
Length = 167
Score = 45.3 bits (108), Expect = 1e-05
Identities = 38/129 (29%), Positives = 54/129 (41%), Gaps = 23/129 (17%)
Query: 390 YIHSSASVHPTAIVGPNVSIDDGAVIGPGVRI-----------KESIILQGASIGNHSLV 438
I SA VHPTA+V +V I D +GPG I I G I H+L
Sbjct: 4 VIDPSAYVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVI--HALE 61
Query: 439 LNSI-VGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITI----LGDG 493
S+ +G+N + + + V G P N F +FN+ K+ + I + DG
Sbjct: 62 GYSVWIGKNVSIAHGAIVHG-PAYIGDN-CFIGF-RSVVFNA--KVGDNCVIGHNAVVDG 116
Query: 494 VTVPGELIV 502
V +P V
Sbjct: 117 VEIPPGRYV 125
Score = 41.1 bits (97), Expect = 4e-04
Identities = 31/93 (33%), Positives = 42/93 (45%), Gaps = 23/93 (24%)
Query: 386 IGDVYIHSSASVHPTA----------IVGPNVSIDDGAV----------IGPGVRIKESI 425
IGDV I + V P A I+G NV+I DG V IG V I
Sbjct: 18 IGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGA 77
Query: 426 ILQG-ASIGNHSLV-LNSIVGRNSKVGNWSRVE 456
I+ G A IG++ + S+V N+KVG+ +
Sbjct: 78 IVHGPAYIGDNCFIGFRSVV-FNAKVGDNCVIG 109
Score = 28.7 bits (65), Expect = 5.1
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 383 CKTIGDVYIHSSASVHPTAIV-GPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLN 440
V+I + S+ AIV GP I D IG + + + IG++++V
Sbjct: 59 ALEGYSVWIGKNVSIAHGAIVHGP-AYIGDNCFIGFRSVVFNAKVGDNCVIGHNAVVDG 116
>gnl|CDD|184643 PRK14354, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 458
Score = 47.1 bits (113), Expect = 1e-05
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 389 VYIHSSASVHPTAIVGPNV------SIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSI 442
YI + + ++ P V I + VIGPG RI +S I G +I +S++ S
Sbjct: 260 TYIDADVEIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTI-TNSVIEESK 318
Query: 443 VGRNSKVG 450
VG N VG
Sbjct: 319 VGDNVTVG 326
Score = 34.4 bits (80), Expect = 0.13
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEII-ILGY 150
KGTR + PK L V G PM++H +++ V+ + +I+ ++G+
Sbjct: 12 KGTRMKS---KLPKVLHKVCGKPMVEHVVDS-VKKAGIDKIVTVVGH 54
Score = 34.4 bits (80), Expect = 0.14
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 400 TAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVLNSIVGRNSKVGN 451
+ + +V I VI PGV IK ++I + IG S +++S +G + N
Sbjct: 259 STYIDADVEIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTITN 311
Score = 34.0 bits (79), Expect = 0.16
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 11/77 (14%)
Query: 385 TIGD-VYIHSS----ASVHPTAIVGPNVSIDDGAVIGPGVRI------KESIILQGASIG 433
TIGD V I +S + V VGP + G+VIG V+I K+S I +G +
Sbjct: 302 TIGDGVTITNSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEGTKVS 361
Query: 434 NHSLVLNSIVGRNSKVG 450
+ + + ++ VG N +G
Sbjct: 362 HLTYIGDAEVGENVNIG 378
>gnl|CDD|188173 TIGR01852, lipid_A_lpxA,
acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine
O-acyltransferase. This model describes LpxA, an enzyme
for the biosynthesis of lipid A, a component
oflipopolysaccharide (LPS) in the outer membrane outer
leaflet of most Gram-negative bacteria. Some differences
are found between lipid A of different species, but this
protein represents the first step (from
UDP-N-acetyl-D-glucosamine) and appears to be conserved
in function. Proteins from this family contain many
copies of the bacterial transferase hexapeptide repeat
(pfam00132) [Cell envelope, Biosynthesis and degradation
of surface polysaccharides and lipopolysaccharides].
Length = 254
Score = 45.7 bits (109), Expect = 2e-05
Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 6/60 (10%)
Query: 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVL-NSIVGRNSKV 449
IH +A + P A +G NV I ++GPGV+I + G + +H ++L ++ +G +++
Sbjct: 1 IHPTAIIEPGAEIGENVEIGPFCIVGPGVKIGD-----GVELKSHVVILGHTTIGEGTRI 55
>gnl|CDD|223735 COG0663, PaaY, Carbonic anhydrases/acetyltransferases, isoleucine
patch superfamily [General function prediction only].
Length = 176
Score = 44.1 bits (105), Expect = 3e-05
Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 38/103 (36%)
Query: 391 IHSSASVHPTA------IVGPNVSIDDGAV------------------------------ 414
I +A V P+A +G VSI GAV
Sbjct: 14 IDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPV 73
Query: 415 -IGPGVRIKESIILQGASIGNHSLV-LNSIVGRNSKVGNWSRV 455
IG V I ++ G +IG++ L+ + + V + +G+ S V
Sbjct: 74 TIGDDVTIGHGAVVHGCTIGDNVLIGMGATVLDGAVIGDGSIV 116
Score = 41.0 bits (97), Expect = 4e-04
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 26/91 (28%)
Query: 386 IGDVYIHSSASVHPTA---------IVGPNVSIDDGAV----------IGPGVRIKESII 426
IGDV I + S+ P A +G +I DG V IG V I +
Sbjct: 27 IGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAV 86
Query: 427 LQGASIGN------HSLVLN-SIVGRNSKVG 450
+ G +IG+ + VL+ +++G S VG
Sbjct: 87 VHGCTIGDNVLIGMGATVLDGAVIGDGSIVG 117
>gnl|CDD|133020 cd02540, GT2_GlmU_N_bac, N-terminal domain of bacterial GlmU. The
N-terminal domain of N-Acetylglucosamine-1-phosphate
uridyltransferase (GlmU). GlmU is an essential bacterial
enzyme with both an acetyltransferase and an
uridyltransferase activity which have been mapped to the
C-terminal and N-terminal domains, respectively. This
family represents the N-terminal uridyltransferase. GlmU
performs the last two steps in the synthesis of
UDP-N-acetylglucosamine (UDP-GlcNAc), which is an
essential precursor in both the peptidoglycan and the
lipopolysaccharide metabolic pathways in Gram-positive
and Gram-negative bacteria, respectively.
Length = 229
Score = 44.8 bits (107), Expect = 3e-05
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 11/73 (15%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEI-IILGYYPSADLQKFVLDM 163
KGTR + S D PK L P+AG PM++H ++A + I +++G+ A+ V
Sbjct: 8 KGTRMK--S-DLPKVLHPLAGKPMLEHVLDAARAL-GPDRIVVVVGH--GAEQ---VKKA 58
Query: 164 VQEYKINIRYLQE 176
+ + LQE
Sbjct: 59 LANPNVEF-VLQE 70
>gnl|CDD|100057 cd04652, LbH_eIF2B_gamma_C, eIF-2B gamma subunit, C-terminal
Left-handed parallel beta-Helix (LbH) domain: eIF-2B is
a eukaryotic translation initiator, a guanine nucleotide
exchange factor (GEF) composed of five different
subunits (alpha, beta, gamma, delta and epsilon). eIF2B
is important for regenerating GTP-bound eIF2 during the
initiation process. This event is obligatory for eIF2 to
bind initiator methionyl-tRNA, forming the ternary
initiation complex. The eIF-2B gamma subunit contains an
N-terminal domain that resembles a dinucleotide-binding
Rossmann fold and a C-terminal LbH domain with 4 turns,
each containing three imperfect tandem repeats of a
hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
The epsilon and gamma subunits form the catalytic
subcomplex of eIF-2B, which binds eIF2 and catalyzes
guanine nucleotide exchange.
Length = 81
Score = 41.4 bits (98), Expect = 5e-05
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Query: 397 VHPTAIVGPNVSID-----DGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVG 450
V VG SI IG V+I +I+ +I + + N I+G + +G
Sbjct: 2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVIG 60
Score = 30.2 bits (69), Expect = 0.49
Identities = 10/49 (20%), Positives = 20/49 (40%)
Query: 409 IDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEG 457
+ + +G IK S+I IG + N ++ N + + +E
Sbjct: 2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLEN 50
Score = 28.7 bits (65), Expect = 1.5
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Query: 402 IVGPNVSID-----DGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKV 449
+G V I D I G ++ II GA IG + + +VG +V
Sbjct: 24 KIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLKDCLVGSGYRV 76
Score = 27.9 bits (63), Expect = 3.0
Identities = 6/33 (18%), Positives = 17/33 (51%)
Query: 425 IILQGASIGNHSLVLNSIVGRNSKVGNWSRVEG 457
++ + +G + + S++G N K+G ++
Sbjct: 1 LVGENTQVGEKTSIKRSVIGANCKIGKRVKITN 33
>gnl|CDD|189409 pfam00132, Hexapep, Bacterial transferase hexapeptide (six
repeats).
Length = 36
Score = 40.1 bits (95), Expect = 6e-05
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 388 DVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK 422
I + + P ++G V I D +IG GV I
Sbjct: 1 GTVIGENVLIGPNVVIGGGVIIGDNVIIGAGVVIG 35
Score = 34.7 bits (81), Expect = 0.004
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 401 AIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLN 440
++G NV I VIG GV I + IG ++
Sbjct: 2 TVIGENVLIGPNVVIGGGVIIGD-----NVIIGAGVVIGG 36
Score = 31.6 bits (73), Expect = 0.057
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 10/46 (21%)
Query: 406 NVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGN 451
I + +IGP V +I G IG+ N I+G +G
Sbjct: 1 GTVIGENVLIGPNV-----VIGGGVIIGD-----NVIIGAGVVIGG 36
>gnl|CDD|133040 cd04197, eIF-2B_epsilon_N, The N-terminal domain of epsilon subunit
of the eIF-2B is a subfamily of glycosyltransferase 2.
N-terminal domain of epsilon subunit of the eukaryotic
translation initiation factor 2B (eIF-2B): eIF-2B is a
guanine nucleotide-exchange factor which mediates the
exchange of GDP (bound to initiation factor eIF2) for
GTP, generating active eIF2.GTP complex. EIF2B is a
complex multimeric protein consisting of five subunits
named alpha, beta, gamma, delta and epsilon. Subunit
epsilon shares sequence similarity with gamma subunit,
and with a family of bifunctional nucleotide-binding
enzymes such as ADP-glucose pyrophosphorylase,
suggesting that epsilon subunit may play roles in
nucleotide binding activity. In yeast, eIF2B gamma
enhances the activity of eIF2B-epsilon leading to the
idea that these subunits form the catalytic subcomplex.
Length = 217
Score = 43.8 bits (104), Expect = 7e-05
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 9/59 (15%)
Query: 106 GTRFRPLSLDSPKPLFPVAGLPMIQHHIE----ACVQVPNLKEIIILGYYPSADLQKFV 160
RFRPL+ + P+ L P+A +P+I + +E V+ E+ + S +++++
Sbjct: 11 NRRFRPLTKEKPRCLLPLANVPLIDYTLEFLALNGVE-----EVFVFCCSHSDQIKEYI 64
>gnl|CDD|179997 PRK05293, glgC, glucose-1-phosphate adenylyltransferase;
Provisional.
Length = 380
Score = 43.7 bits (104), Expect = 2e-04
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 20/89 (22%)
Query: 391 IHSSASVHPTAIVGPNVS-----IDDGAV---------------IGPGVRIKESIILQGA 430
I+S P + N + +G V +G G +K+S+I+ GA
Sbjct: 273 IYSVNPNLPPQYIAENAKVKNSLVVEGCVVYGTVEHSVLFQGVQVGEGSVVKDSVIMPGA 332
Query: 431 SIGNHSLVLNSIVGRNSKVGNWSRVEGTP 459
IG + ++ +I+G N+ +G+ + G
Sbjct: 333 KIGENVVIERAIIGENAVIGDGVIIGGGK 361
>gnl|CDD|227093 COG4750, LicC, CTP:phosphocholine cytidylyltransferase involved in
choline phosphorylation for cell surface LPS epitopes
[Cell envelope biogenesis, outer membrane].
Length = 231
Score = 42.4 bits (100), Expect = 2e-04
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 106 GTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGY 150
G+RF PL+ +PK L V G P+I+ IE + I++GY
Sbjct: 11 GSRFVPLTQSTPKSLLKVNGEPLIERQIEQLREAGIDDITIVVGY 55
>gnl|CDD|133065 cd06915, NTP_transferase_WcbM_like, WcbM_like is a subfamily of
nucleotidyl transferases. WcbM protein of Burkholderia
mallei is involved in the biosynthesis, export or
translocation of capsule. It is a subfamily of
nucleotidyl transferases that transfer nucleotides onto
phosphosugars.
Length = 223
Score = 42.2 bits (100), Expect = 3e-04
Identities = 50/258 (19%), Positives = 81/258 (31%), Gaps = 80/258 (31%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVL--- 161
GTR R + D PKPL PVAG P +++ +L Y + + VL
Sbjct: 8 LGTRLRSVVKDLPKPLAPVAGRPFLEY---------------LLEYLARQGISRIVLSVG 52
Query: 162 ---DMVQEYKINIRYLQE--FWDIIHQQICISLYWTWYRNTRS---TYGIYRNSLHWVQE 213
+ + Y + I +Y T G +N+L + E
Sbjct: 53 YLAEQI------EEYFGDGYRGGIRI----------YYVIEPEPLGTGGAIKNALPKLPE 96
Query: 214 AVYFTL------EIRSDVVILMHSLYSMAILVTVMATEATRQQSVY-YGCI-VRKQQTSE 265
+ L ++ ++ + + R YG + V
Sbjct: 97 DQFLVLNGDTYFDVDLLALLAALRASGADATMAL-----RRVPDASRYGNVTVDGDG--R 149
Query: 266 ISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQ 325
+ +VEK L+N GVYL +I I A D F
Sbjct: 150 VIAFVEKGPGAAPGLINGGVYLLRKEILAEIPA------DAFS----------------- 186
Query: 326 LEKEIIMPLAGSGKAYVY 343
LE +++ L G+ Y +
Sbjct: 187 LEADVLPALVKRGRLYGF 204
>gnl|CDD|100061 cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit, central
Left-handed parallel beta-Helix (LbH) domain: eIF-2B is
a eukaryotic translation initiator, a guanine nucleotide
exchange factor (GEF) composed of five different
subunits (alpha, beta, gamma, delta and epsilon). eIF2B
is important for regenerating GTP-bound eIF2 during the
initiation process. This event is obligatory for eIF2 to
bind initiator methionyl-tRNA, forming the ternary
initiation complex. The eIF-2B epsilon subunit contains
an N-terminal domain that resembles a
dinucleotide-binding Rossmann fold, a central LbH domain
containing 4 turns, each containing three imperfect
tandem repeats of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of
unknown function that is present in eIF-4 gamma, eIF-5,
and eIF-2B epsilon. The epsilon and gamma subunits form
the catalytic subcomplex of eIF-2B, which binds eIF2 and
catalyzes guanine nucleotide exchange.
Length = 79
Score = 38.7 bits (91), Expect = 4e-04
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 11/66 (16%)
Query: 402 IVGPNVSIDDGAV-----------IGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVG 450
++G SI +G IG V I S I +I + + +SIV + +G
Sbjct: 1 VIGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADGAVIG 60
Query: 451 NWSRVE 456
+
Sbjct: 61 KGCTIP 66
Score = 33.3 bits (77), Expect = 0.040
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 425 IILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGT 458
+I +G SIG + + NS++GRN K+G ++ +
Sbjct: 1 VIGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNS 34
Score = 29.9 bits (68), Expect = 0.64
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 385 TIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE 423
TI D + V A++G +I G++I GV I +
Sbjct: 41 TIEDGCTIHHSIVADGAVIGKGCTIPPGSLISFGVVIGD 79
Score = 29.5 bits (67), Expect = 0.72
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 409 IDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEG 457
I G IG G IK S+I + IG + ++ NS + + + + +
Sbjct: 2 IGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHH 50
Score = 26.4 bits (59), Expect = 9.2
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
Query: 406 NVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLN-SIVGRNSKVG 450
+V+I+DG I SI+ GA IG + S++ +G
Sbjct: 39 DVTIEDGCTIH------HSIVADGAVIGKGCTIPPGSLISFGVVIG 78
>gnl|CDD|234432 TIGR03991, alt_bact_glmU, UDP-N-acetylglucosamine
diphosphorylase/glucosamine-1-phosphate
N-acetyltransferase. The MJ_1101 protein from
Methanococcus jannaschii has been characterized as the
GlmU enzyme catalyzing the final two steps of UDP-GlcNAc
biosynthesis. Homologs of this enzyme are identified in
a number of bacterial organisms and modeled here. A
number of these are observed in proximity to the GlmS
and GlmM genes, and phylogenetic profiling by PPP
identifies the LEPBI_I0518 gene in Leptospira biflexa as
a likely Glm-system candidate. Multiple sequence
alignments of these bacterial homologs with their
archaeal counterparts reveals significant structural
differences, necessitating the construction of separate
models.
Length = 337
Score = 42.3 bits (100), Expect = 4e-04
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 397 VHPTAIVGPNVSID--DGAV-IGPGVRIKESIILQG-ASIGNHSLV-LNSIVGRNSKVGN 451
+ A V P +D DG + IG RI+ L+G IG + V + + + +G
Sbjct: 126 IEEGATVRPGAVLDASDGPIYIGKDARIEPFSFLEGPVYIGPGARVKAGARIYGGTSIGP 185
Query: 452 WSRVEG 457
++ G
Sbjct: 186 TCKIGG 191
Score = 28.8 bits (65), Expect = 7.8
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 16/75 (21%)
Query: 387 GDVYIHSSASVHPTAI------VGPNVSIDDGA------VIGPGVRI----KESIILQGA 430
G +YI A + P + +GP + GA IGP +I + SII +
Sbjct: 143 GPIYIGKDARIEPFSFLEGPVYIGPGARVKAGARIYGGTSIGPTCKIGGEVENSIIEGYS 202
Query: 431 SIGNHSLVLNSIVGR 445
+ + + +S +G
Sbjct: 203 NKHHDGFLGHSYLGS 217
>gnl|CDD|237686 PRK14356, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 456
Score = 42.4 bits (100), Expect = 5e-04
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 389 VYIHSSASVHPTAIVGPNVSIDDGAVI-GPGVRIKESIILQGASIGNHSLVLNSIVGRNS 447
V IH+ SV +GP +I+ GA I GP S I +GA I +H + +++V +
Sbjct: 256 VLIHAPESVR----IGPRATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGA 311
Query: 448 KVGNWSRVEG 457
+ ++S +EG
Sbjct: 312 TIHSFSHLEG 321
Score = 30.5 bits (69), Expect = 2.3
Identities = 19/88 (21%), Positives = 41/88 (46%), Gaps = 18/88 (20%)
Query: 380 SSQCKTIGDVYIHSSASVHP-----TAIVGPNVSI------------DDGAVIGPGVRIK 422
S C + D + S A++H A VG S+ ++GA +G V +K
Sbjct: 297 HSHCW-LRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMK 355
Query: 423 ESIILQGASIGNHSLVLNSIVGRNSKVG 450
++++ +GA + + + ++ +G + +G
Sbjct: 356 KAVLGKGAKANHLTYLGDAEIGAGANIG 383
>gnl|CDD|133009 cd02516, CDP-ME_synthetase, CDP-ME synthetase is involved in
mevalonate-independent isoprenoid production.
4-diphosphocytidyl-2-methyl-D-erythritol synthase
(CDP-ME), also called 2C-methyl-d-erythritol
4-phosphate cytidylyltransferase catalyzes the third
step in the alternative (non-mevalonate) pathway of
Isopentenyl diphosphate (IPP) biosynthesis: the
formation of 4-diphosphocytidyl-2C-methyl-D-erythritol
from CTP and 2C-methyl-D-erythritol 4-phosphate. This
mevalonate independent pathway that utilizes pyruvate
and glyceraldehydes 3-phosphate as starting materials
for production of IPP occurs in a variety of bacteria,
archaea and plant cells, but is absent in mammals. Thus,
CDP-ME synthetase is an attractive targets for the
structure-based design of selective antibacterial,
herbicidal and antimalarial drugs.
Length = 218
Score = 41.0 bits (97), Expect = 7e-04
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIII 147
G+R D PK + G P+++H +EA + P + EI++
Sbjct: 10 SGSRM---GADIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVV 49
>gnl|CDD|100045 cd03354, LbH_SAT, Serine acetyltransferase (SAT): SAT catalyzes the
CoA-dependent acetylation of the side chain hydroxyl
group of L-serine to form O-acetylserine, as the first
step of a two-step biosynthetic pathway in bacteria and
plants leading to the formation of L-cysteine. This
reaction represents a key metabolic point of regulation
for the cysteine biosynthetic pathway due to its
feedback inhibition by cysteine. The enzyme is a 175 kDa
homohexamer, composed of a dimer of homotrimers. Each
subunit contains an N-terminal alpha helical region and
a C-terminal left-handed beta-helix (LbH) subdomain with
5 turns, each containing a hexapeptide repeat motif
characteristic of the acyltransferase superfamily of
enzymes. The trimer interface mainly involves the
C-terminal LbH subdomain while the dimer (of trimers)
interface is mediated by the N-terminal alpha helical
subdomain.
Length = 101
Score = 38.2 bits (90), Expect = 0.001
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 397 VHPTAIVGPNVSIDDGAVIGPGVRIKES---IILQGASIGNHSLVLNSI-VGRNSKVG 450
+ TA++G N +I G +G + I IG + +L +I +G N K+G
Sbjct: 25 IGETAVIGDNCTIYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGNITIGDNVKIG 82
>gnl|CDD|133041 cd04198, eIF-2B_gamma_N, The N-terminal domain of gamma subunit of
the eIF-2B is a subfamily of glycosyltransferase 2.
N-terminal domain of gamma subunit of the eukaryotic
translation initiation factor 2B (eIF-2B): eIF-2B is a
guanine nucleotide-exchange factor which mediates the
exchange of GDP (bound to initiation factor eIF2) for
GTP, generating active eIF2.GTP complex. EIF2B is a
complex multimeric protein consisting of five subunits
named alpha, beta, gamma, delta and epsilon. Subunit
gamma shares sequence similarity with epsilon subunit,
and with a family of bifunctional nucleotide-binding
enzymes such as ADP-glucose pyrophosphorylase,
suggesting that epsilon subunit may play roles in
nucleotide binding activity. In yeast, eIF2B gamma
enhances the activity of eIF2B-epsilon leading to the
idea that these subunits form the catalytic subcomplex.
Length = 214
Score = 39.9 bits (94), Expect = 0.001
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIIL 148
G+R PL+ + PK L PVA PMI + ++ + +++I++
Sbjct: 10 GGSRLYPLTDNIPKALLPVANKPMIWYPLDWLEKA-GFEDVIVV 52
>gnl|CDD|133010 cd02517, CMP-KDO-Synthetase, CMP-KDO synthetase catalyzes the
activation of KDO which is an essential component of the
lipopolysaccharide. CMP-KDO Synthetase:
3-Deoxy-D-manno-octulosonate cytidylyltransferase
(CMP-KDO synthetase) catalyzes the conversion of CTP and
3-deoxy-D-manno-octulosonate into
CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and
pyrophosphate. KDO is an essential component of the
lipopolysaccharide found in the outer surface of
gram-negative eubacteria. It is also a constituent of
the capsular polysaccharides of some gram-negative
eubacteria. Its presence in the cell wall
polysaccharides of green algae and plant were also
discovered. However, they have not been found in yeast
and animals. The absence of the enzyme in mammalian
cells makes it an attractive target molecule for drug
design.
Length = 239
Score = 40.1 bits (95), Expect = 0.001
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 8/42 (19%)
Query: 107 TRFRPLSLDSP-KPLFPVAGLPMIQHHIEACVQVPNLKEIII 147
+R P KPL +AG PMIQH E + L E+++
Sbjct: 13 SRL-------PGKPLADIAGKPMIQHVYERAKKAKGLDEVVV 47
>gnl|CDD|183539 PRK12461, PRK12461, UDP-N-acetylglucosamine acyltransferase;
Provisional.
Length = 255
Score = 40.0 bits (94), Expect = 0.002
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 19/62 (30%)
Query: 391 IHSSASVHPTA------------IVGPNVSIDDGAVIGPGVRI-------KESIILQGAS 431
IH +A + P+A ++G NV I DG IGP I K + I QGA
Sbjct: 2 IHPTAVIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAV 61
Query: 432 IG 433
+G
Sbjct: 62 VG 63
Score = 31.5 bits (72), Expect = 0.88
Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 23/101 (22%)
Query: 397 VHPTAIVGPNVSIDDGAVIGPGVRIKE-SIILQGASIGNHSLVLNSIVGRNSKVGNWSRV 455
+HPTA+ ID A +G GV I ++I IG+ + +G ++ + +R+
Sbjct: 2 IHPTAV------IDPSAKLGSGVEIGPFAVIGANVEIGD-----GTWIGPHAVILGPTRI 50
Query: 456 EGTPCDPNPNKAFAKM---DNPPLFNSNGKLNPSITILGDG 493
NK D P F G+ S +GD
Sbjct: 51 G------KNNKIHQGAVVGDEPQDFTYKGE--ESRLEIGDR 83
>gnl|CDD|178297 PLN02694, PLN02694, serine O-acetyltransferase.
Length = 294
Score = 40.4 bits (94), Expect = 0.002
Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 36/136 (26%)
Query: 358 AIYANRHYLQLY-KTRHPERLQCSSQCKTIGDVYIHSSAS--------------VHPTAI 402
A A+R +L+ ++R P L S+ + V IH +A + TA+
Sbjct: 129 ACQAHRVAHKLWTQSRRPLALALHSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAV 188
Query: 403 VGPNVSI--------------------DDGAVIGPGVRIKESI-ILQGASIGNHSLVLNS 441
+G NVSI DG +IG G I ++ I +GA IG S+VL
Sbjct: 189 IGNNVSILHHVTLGGTGKACGDRHPKIGDGVLIGAGATILGNVKIGEGAKIGAGSVVLID 248
Query: 442 IVGRNSKVGNWSRVEG 457
+ R + VGN +R+ G
Sbjct: 249 VPPRTTAVGNPARLVG 264
>gnl|CDD|237685 PRK14355, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 459
Score = 40.5 bits (95), Expect = 0.002
Identities = 17/63 (26%), Positives = 28/63 (44%)
Query: 389 VYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSK 448
YI + + P V I IG G I++ ++++G IG+ V V +S
Sbjct: 263 TYIDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSV 322
Query: 449 VGN 451
VG+
Sbjct: 323 VGD 325
Score = 35.1 bits (81), Expect = 0.090
Identities = 16/63 (25%), Positives = 30/63 (47%)
Query: 388 DVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNS 447
V I +++P + + I +G I GV IK I ++ S++ +S+VG +
Sbjct: 268 GVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDV 327
Query: 448 KVG 450
+G
Sbjct: 328 AIG 330
Score = 30.1 bits (68), Expect = 3.4
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEA 135
KGTR + D K + P+AG PM+ + A
Sbjct: 13 KGTRMKS---DLVKVMHPLAGRPMVSWPVAA 40
>gnl|CDD|215205 PLN02357, PLN02357, serine acetyltransferase.
Length = 360
Score = 39.9 bits (93), Expect = 0.003
Identities = 33/99 (33%), Positives = 43/99 (43%), Gaps = 27/99 (27%)
Query: 400 TAIVGPNVSI--------------------DDGAVIGPGVRIKESI-ILQGASIGNHSLV 438
TA+VG NVSI DG +IG G I +I I +GA IG S+V
Sbjct: 252 TAVVGNNVSILHNVTLGGTGKQSGDRHPKIGDGVLIGAGTCILGNITIGEGAKIGAGSVV 311
Query: 439 LNSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLF 477
L + R + VGN +R+ G +P K D P
Sbjct: 312 LKDVPPRTTAVGNPARLIGGKENP------IKHDKIPSL 344
>gnl|CDD|100058 cd04745, LbH_paaY_like, paaY-like: This group is composed by
uncharacterized proteins with similarity to the protein
product of the E. coli paaY gene, which is part of the
paa gene cluster responsible for phenylacetic acid
degradation. Proteins in this group are expected to
adopt the left-handed parallel beta-helix (LbH)
structure. They contain imperfect tandem repeats of a
hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Similarity to gamma carbonic anhydrase and
Ferripyochelin Binding Protein (FBP) may suggest metal
binding capacity.
Length = 155
Score = 37.7 bits (88), Expect = 0.004
Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 26/86 (30%)
Query: 391 IHSSASVHPTAIVGPNVSIDDGAVIGP---------------GVRIKESIILQG------ 429
+ S+ VHPTA++ +V I IGP G ++++ ++ G
Sbjct: 3 VDPSSFVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDT 62
Query: 430 -----ASIGNHSLVLNSIVGRNSKVG 450
IG+ +++ +GRN+ VG
Sbjct: 63 VLEENGHIGHGAILHGCTIGRNALVG 88
Score = 28.1 bits (63), Expect = 8.0
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 386 IGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESII 426
IG I ++ A+VG N + DGAVIG +ESI+
Sbjct: 70 IGHGAILHGCTIGRNALVGMNAVVMDGAVIG-----EESIV 105
>gnl|CDD|237688 PRK14358, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 481
Score = 39.2 bits (91), Expect = 0.005
Identities = 18/67 (26%), Positives = 35/67 (52%)
Query: 389 VYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSK 448
V + ++ P ++ + DG IG + +S++ +GA I HS++ + VG S
Sbjct: 271 VTLGRDVTIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSD 330
Query: 449 VGNWSRV 455
VG ++R+
Sbjct: 331 VGPFARL 337
Score = 29.9 bits (67), Expect = 3.7
Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 17/104 (16%)
Query: 393 SSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNW 452
+ + T +G +V+I+ G ++ R+ + G +IG +S+V +S++ + +
Sbjct: 263 GTILIEDTVTLGRDVTIEPGVLLRGQTRVAD-----GVTIGAYSVVTDSVLHEGAVIKPH 317
Query: 453 SRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTV 496
S +EG + A D P +L P T+LG+GV +
Sbjct: 318 SVLEGA-------EVGAGSDVGPF----ARLRPG-TVLGEGVHI 349
>gnl|CDD|233721 TIGR02092, glgD, glucose-1-phosphate adenylyltransferase, GlgD
subunit. This family is GlgD, an apparent regulatory
protein that appears in an alpha2/beta2 heterotetramer
with GlgC (glucose-1-phosphate adenylyltransferase,
TIGR02091) in a subset of bacteria that use GlgC for
glycogen biosynthesis [Energy metabolism, Biosynthesis
and degradation of polysaccharides].
Length = 369
Score = 38.9 bits (91), Expect = 0.005
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 412 GAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDP 462
G +G IK II+Q IG + + N I+ ++ + ++ GT P
Sbjct: 310 GVHVGKDALIKNCIIMQRTVIGEGAHLENVIIDKDVVIEPNVKIAGTSEQP 360
>gnl|CDD|100049 cd03359, LbH_Dynactin_5, Dynactin 5 (or subunit p25); Dynactin is a
major component of the activator complex that stimulates
dynein-mediated vesicle transport. Dynactin is a
heterocomplex of at least eight subunits, including a
150,000-MW protein called Glued, the actin-capping
protein Arp1, and dynamatin. In vitro binding
experiments show that dynactin enhances dynein-dependent
motility, possibly through interaction with microtubules
and vesicles. Subunit p25 is part of the pointed-end
subcomplex in dynactin that also includes p26, p27, and
Arp11. This subcomplex interacts with membranous
cargoes. p25 and p27 contain imperfect tandem repeats of
a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X),
indicating a left-handed parallel beta helix (LbH)
structural domain. Proteins containing hexapeptide
repeats are often enzymes showing acyltransferase
activity.
Length = 161
Score = 37.2 bits (87), Expect = 0.006
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 14/77 (18%)
Query: 385 TIGD-VYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE-SIILQGASIGNHSLVLNSI 442
IGD V+I + V+ A +G V I VIG IK+ IL ++
Sbjct: 74 HIGDYVFIGENCVVN-AAQIGSYVHIGKNCVIGRRCIIKDCVKILD-----------GTV 121
Query: 443 VGRNSKVGNWSRVEGTP 459
V ++ + +S V G P
Sbjct: 122 VPPDTVIPPYSVVSGRP 138
>gnl|CDD|237687 PRK14357, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 448
Score = 38.6 bits (90), Expect = 0.007
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 11/84 (13%)
Query: 385 TIGD---VYIHSSASVHPTAIVGP------NVSIDDGAVIGPGVRIKESIILQGASIGNH 435
TI D YIH + I+ P I + IGP RI + I I
Sbjct: 243 TILDPNTTYIHYDVEIGMDTIIYPMTFIEGKTRIGEDCEIGPMTRIVDCEIGNNVKI-IR 301
Query: 436 SLVLNSIVGRNSKVGNWSRV-EGT 458
S S++ + VG +SR+ EGT
Sbjct: 302 SECEKSVIEDDVSVGPFSRLREGT 325
Score = 30.9 bits (70), Expect = 1.8
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 409 IDDGAVIGPGVRIKESIILQ-GASIGNHSLVLNSIVGRNSK 448
I+D +GP R++E +L+ IGN + S +G N+K
Sbjct: 309 IEDDVSVGPFSRLREGTVLKKSVKIGNFVEIKKSTIGENTK 349
>gnl|CDD|184642 PRK14353, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 446
Score = 38.3 bits (90), Expect = 0.008
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSAD-LQKFVLDM 163
+GTR + PK L PVAG PM+ H + A + + +++G P A+ + +
Sbjct: 15 EGTRMKS---SLPKVLHPVAGRPMLAHVLAAAASLGPSRVAVVVG--PGAEAVAAAAAKI 69
Query: 164 VQEYKINIRYLQE 176
+ +I ++Q+
Sbjct: 70 APDAEI---FVQK 79
Score = 35.2 bits (82), Expect = 0.072
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 397 VHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHS-LVLNSIVGRNSKVGN 451
+ P + GP V++ GAVI ++ + + +GA +G ++ L + +G +KVGN
Sbjct: 277 IEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGN 332
>gnl|CDD|223188 COG0110, WbbJ, Acetyltransferase (isoleucine patch superfamily)
[General function prediction only].
Length = 190
Score = 37.2 bits (86), Expect = 0.008
Identities = 22/94 (23%), Positives = 34/94 (36%), Gaps = 24/94 (25%)
Query: 385 TIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRI--------------------KES 424
TIGD V+ +VG ++I D V+GP V I
Sbjct: 69 TIGD---LCFIGVNVVILVGEGITIGDNVVVGPNVTIYTNSHPGDFVTANIGALVGAGPV 125
Query: 425 IILQGASIGNHSLVL-NSIVGRNSKVGNWSRVEG 457
I + IG +++L +G + +G S V
Sbjct: 126 TIGEDVWIGAGAVILPGVTIGEGAVIGAGSVVTK 159
Score = 36.8 bits (85), Expect = 0.014
Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
Query: 359 IYANRHYLQLYKTRHPERLQCSSQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPG 418
IY N H G V I + A++ P V+I +GAVIG G
Sbjct: 102 IYTNSHPGDFVTANIGAL-------VGAGPVTIGEDVWIGAGAVILPGVTIGEGAVIGAG 154
Query: 419 VRIKESIILQGASIGN 434
+ + + G GN
Sbjct: 155 SVVTKDVPPYGIVAGN 170
>gnl|CDD|100048 cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed parallel
beta-Helix (LbH) N-terminal domain: This group is
composed of Xanthomonas campestris WcxM and proteins
with similarity to the WcxM N-terminal domain. WcxM is
thought to be bifunctional, catalyzing both the
isomerization and transacetylation reactions of
keto-hexoses. It contains an N-terminal LbH domain
responsible for the transacetylation function and a
C-terminal isomerase domain. The LbH domain contains
imperfect tandem repeats of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with
acyltransferase activity.
Length = 119
Score = 35.9 bits (84), Expect = 0.009
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 24/84 (28%)
Query: 385 TIGD-VYIHSSASVHPTAIVGPNVSIDDGAVIGPGV----------------RIKESIIL 427
IGD V I S+ S+ V+I+D IGP V +K + +
Sbjct: 18 KIGDNVKIQSNVSI------YEGVTIEDDVFIGPNVVFTNDLYPRSKIYRKWELKGTTVK 71
Query: 428 QGASIGNHSLVL-NSIVGRNSKVG 450
+GASIG ++ +L +G + VG
Sbjct: 72 RGASIGANATILPGVTIGEYALVG 95
Score = 30.2 bits (69), Expect = 0.87
Identities = 21/108 (19%), Positives = 34/108 (31%), Gaps = 29/108 (26%)
Query: 402 IVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCD 461
I+G NV I++ IG V+I+ SI + + +G
Sbjct: 6 IIGTNVFIENDVKIGDNVKIQ-----SNVSIYE-----GVTIEDDVFIG----------- 44
Query: 462 PNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLP 509
PN F P T+ G ++ N+ +LP
Sbjct: 45 --PNVVFTNDLYPRSKIYRKWELKGTTV-KRGASIGA-----NATILP 84
>gnl|CDD|223975 COG1045, CysE, Serine acetyltransferase [Amino acid transport and
metabolism].
Length = 194
Score = 36.9 bits (86), Expect = 0.011
Identities = 38/156 (24%), Positives = 59/156 (37%), Gaps = 43/156 (27%)
Query: 358 AIYANR--HYLQLYKTRHPERLQ-CSSQCKTIGDVYIHSSAS--------------VHPT 400
A++A+R H+L + + SS + + + IH A + T
Sbjct: 36 ALWAHRLAHWL--WNRGRKLLARLLSSLSRFLFGIEIHPGAKIGRGLFIDHGTGVVIGET 93
Query: 401 AIVGPNVSI--------------------DDGAVIGPGVRIKESI-ILQGASIGNHSLVL 439
A++G +V+I +G IG G +I +I I A IG S+VL
Sbjct: 94 AVIGDDVTIYHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGNIEIGDNAKIGAGSVVL 153
Query: 440 NSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPP 475
+ + VG +RV G P K MD P
Sbjct: 154 KDVPPNATVVGVPARVIGRPGSK---KPVRDMDQLP 186
>gnl|CDD|181867 PRK09451, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 456
Score = 37.7 bits (88), Expect = 0.012
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQV 139
KGTR + D PK L +AG PM+QH I+A ++
Sbjct: 15 KGTR---MYSDLPKVLHTLAGKPMVQHVIDAANEL 46
Score = 34.2 bits (79), Expect = 0.14
Identities = 14/53 (26%), Positives = 28/53 (52%)
Query: 402 IVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSR 454
I+ NV++ + IG G +K +I I +S+V ++ +G +G ++R
Sbjct: 279 IIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFAR 331
Score = 30.0 bits (68), Expect = 3.6
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 385 TIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE-SIILQGASIGNHSLVLNSIV 443
IGD S SV A +G IGP R++ + + +GA +GN + + +
Sbjct: 302 VIGDDCEISPYSVVEDANLGAA------CTIGPFARLRPGAELAEGAHVGNFVEMKKARL 355
Query: 444 GRNSKVGNWS 453
G+ SK G+ +
Sbjct: 356 GKGSKAGHLT 365
>gnl|CDD|216984 pfam02348, CTP_transf_3, Cytidylyltransferase. This family
consists of two main Cytidylyltransferase activities: 1)
3-deoxy-manno-octulosonate cytidylyltransferase,,
EC:2.7.7.38 catalyzing the reaction:- CTP +
3-deoxy-D-manno-octulosonate <=> diphosphate +
CMP-3-deoxy-D-manno-octulosonate, 2) acylneuraminate
cytidylyltransferase EC:2.7.7.43, catalyzing the
reaction:- CTP + N-acylneuraminate <=> diphosphate +
CMP-N-acylneuraminate. NeuAc cytydilyltransferase of
Mannheimia haemolytica has been characterized describing
kinetics and regulation by substrate charge, energetic
charge and amino-sugar demand.
Length = 197
Score = 36.9 bits (86), Expect = 0.013
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 118 KPLFPVAGLPMIQHHIEACVQVPNLKEIII 147
K L + G P+I IEA +Q ++++
Sbjct: 16 KNLLKLGGKPLIARVIEAALQSKLFDKVVV 45
>gnl|CDD|234846 PRK00844, glgC, glucose-1-phosphate adenylyltransferase;
Provisional.
Length = 407
Score = 37.5 bits (88), Expect = 0.016
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 389 VYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSK 448
I S A+V +++ PNV ++ GA +++S+++ G IG ++V +I+ +N
Sbjct: 322 SII-SGATVR-NSVLSPNVVVESGA------EVEDSVLMDGVRIGRGAVVRRAILDKNVV 373
Query: 449 VG 450
V
Sbjct: 374 VP 375
Score = 32.9 bits (76), Expect = 0.36
Identities = 52/250 (20%), Positives = 86/250 (34%), Gaps = 79/250 (31%)
Query: 239 VTVMATEATRQQSVYYGCIVRKQQTSE---ISHYVEKPSTFVS-------TLVNCGVYLF 288
VTV A R+++ +G I + I ++EKP+ L + G Y+F
Sbjct: 147 VTVAAIRVPREEASAFGVI----EVDPDGRIRGFLEKPADPPGLPDDPDEALASMGNYVF 202
Query: 289 SLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSK- 347
+ D + A+ + DE D +II L G+AYVY S
Sbjct: 203 TTDAL--VDALRRDAADE---------DSSHDMG-----GDIIPRLVERGRAYVYDFSTN 246
Query: 348 -----------WWSQLKSAGSAIYANRHYLQ------LYKTRHPERLQCSSQCKTIGDVY 390
+W + + + A+ L LY P
Sbjct: 247 EVPGATERDRGYWRDVGTIDAYYDAHMDLLSVHPVFNLYNREWP---------------- 290
Query: 391 IHSSASVHPTA-IV--GPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNS 447
I++S+ P A V G V +++ G I+ GA++ N S++ N
Sbjct: 291 IYTSSPNLPPAKFVDGGGRVGSAQDSLVSAGS------IISGATVRN------SVLSPNV 338
Query: 448 KVGNWSRVEG 457
V + + VE
Sbjct: 339 VVESGAEVED 348
>gnl|CDD|227138 COG4801, COG4801, Predicted acyltransferase [General function
prediction only].
Length = 277
Score = 37.1 bits (86), Expect = 0.016
Identities = 20/99 (20%), Positives = 44/99 (44%), Gaps = 18/99 (18%)
Query: 415 IGPGVRIKESIILQGAS--IGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMD 472
+ P R++E+II+ IG +S++ +VG VG R+ G + ++D
Sbjct: 6 VPPNTRVEEAIIVVKGDVIIGKNSMLKYGVVGEEIIVGERVRIYGDIVAKD-----IRID 60
Query: 473 NPPLFNSNGKLNPSITI-----LGDGVTVPGELIVLNSI 506
K+ ++ + +G+ ++ G+L V+ +
Sbjct: 61 ------MWCKVTGNVIVENDAYIGEFSSIKGKLTVIGDL 93
>gnl|CDD|133021 cd02541, UGPase_prokaryotic, Prokaryotic UGPase catalyses the
synthesis of UDP-glucose. Prokaryotic UDP-Glucose
Pyrophosphorylase (UGPase) catalyzes a reversible
production of UDP-Glucose and pyrophosphate (PPi) from
glucose-1-phosphate and UTP. UDP-glucose plays pivotal
roles in galactose utilization, in glycogen synthesis,
and in the synthesis of the carbohydrate moieties of
glycolipids , glycoproteins , and proteoglycans. UGPase
is found in both prokaryotes and eukaryotes, although
prokaryotic and eukaryotic forms of UGPase catalyze the
same reaction, they share low sequence similarity.
Length = 267
Score = 36.7 bits (86), Expect = 0.018
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 106 GTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIII 147
GTRF P + PK + P+ P+IQ+ +E V +++III
Sbjct: 11 GTRFLPATKAIPKEMLPIVDKPVIQYIVEEAVAA-GIEDIII 51
>gnl|CDD|184646 PRK14360, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 450
Score = 37.2 bits (87), Expect = 0.018
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 406 NVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEG 457
N I G IGPG I+ S I + ++ +S+V +S +G K+G ++ +
Sbjct: 280 NTVIGSGCRIGPGSLIENSQIGENVTV-LYSVVSDSQIGDGVKIGPYAHLRP 330
Score = 30.3 bits (69), Expect = 2.4
Identities = 16/73 (21%), Positives = 31/73 (42%)
Query: 378 QCSSQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSL 437
+ + D I + P A + P I IG V IK+S + +G+ + + S
Sbjct: 303 NVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQLGEGSKVNHLSY 362
Query: 438 VLNSIVGRNSKVG 450
+ ++ +G +G
Sbjct: 363 IGDATLGEQVNIG 375
Score = 29.9 bits (68), Expect = 3.8
Identities = 12/46 (26%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGY 150
KGTR + PK L P+ G +++ +++C ++ + ++I+G+
Sbjct: 11 KGTRMKS---SLPKVLHPLGGKSLVERVLDSCEELKPDRRLVIVGH 53
>gnl|CDD|133025 cd04182, GT_2_like_f, GT_2_like_f is a subfamily of the
glycosyltransferase family 2 (GT-2) with unknown
function. GT-2 includes diverse families of
glycosyltransferases with a common GT-A type structural
fold, which has two tightly associated beta/alpha/beta
domains that tend to form a continuous central sheet of
at least eight beta-strands. These are enzymes that
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. Glycosyltransferases have been
classified into more than 90 distinct sequence based
families.
Length = 186
Score = 35.6 bits (83), Expect = 0.029
Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGY 150
+ +R K L P+ G P+++H ++A + + I++LG
Sbjct: 10 RSSRMG-----GNKLLLPLDGKPLLRHALDAALAAGLSRVIVVLGA 50
>gnl|CDD|133026 cd04183, GT2_BcE_like, GT2_BcbE_like is likely involved in the
biosynthesis of the polysaccharide capsule.
GT2_BcbE_like: The bcbE gene is one of the genes in the
capsule biosynthetic locus of Pasteurella multocida. Its
deducted product is likely involved in the biosynthesis
of the polysaccharide capsule, which is found on surface
of a wide range of bacteria. It is a subfamily of
Glycosyltransferase Family GT2, which includes diverse
families of glycosyltransferases with a common GT-A type
structural fold, which has two tightly associated
beta/alpha/beta domains that tend to form a continuous
central sheet of at least eight beta-strands. These are
enzymes that catalyze the transfer of sugar moieties
from activated donor molecules to specific acceptor
molecules, forming glycosidic bonds.
Length = 231
Score = 35.7 bits (83), Expect = 0.033
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLD-M 163
G+RF+ PKPL V G PMI+ IE+ ++ + + I I KF LD
Sbjct: 8 LGSRFKKAGYTYPKPLIEVDGKPMIEWVIESLAKIFDSRFIFI---CRDEHNTKFHLDES 64
Query: 164 VQEYKIN 170
++ N
Sbjct: 65 LKLLAPN 71
>gnl|CDD|132571 TIGR03532, DapD_Ac, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
N-acetyltransferase. This enzyme is part of the
diaminopimelate pathway of lysine biosynthesis.
Alternate name: tetrahydrodipicolinate
N-acetyltransferase. Note that IUBMB lists this
alternate name as the accepted name. Unfortunately, the
related succinyl transferase acting on the same
substrate (EC:2.3.1.117, TIGR00695) uses the opposite
standard. We have decided to give these two enzymes
names which more clearly indicated that they act on the
same substrate.
Length = 231
Score = 35.5 bits (82), Expect = 0.040
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 392 HSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLV-LNSIVGRNSKVG 450
+ +A + P AI+ V I D AVI G ++I GA IG +++ +N+++G + VG
Sbjct: 84 NINARIEPGAIIRDQVIIGDNAVIMMG-----AVINIGAEIGEGTMIDMNAVLGGRATVG 138
>gnl|CDD|184641 PRK14352, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 482
Score = 35.7 bits (83), Expect = 0.054
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 388 DVYIHSSASVHP-TAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRN 446
DV I +HP T ++G +I + AV+GP + + + +GAS+ + S +G
Sbjct: 271 DVTIGRDVVIHPGTQLLG-RTTIGEDAVVGPDTTLTDVTVGEGASVVR-THGSESEIGAG 328
Query: 447 SKVGNWS 453
+ VG ++
Sbjct: 329 ATVGPFT 335
>gnl|CDD|221780 pfam12804, NTP_transf_3, MobA-like NTP transferase domain. This
family includes the MobA protein (Molybdopterin-guanine
dinucleotide biosynthesis protein A). The family also
includes a wide range of other NTP transferase domain.
Length = 178
Score = 34.5 bits (80), Expect = 0.061
Identities = 7/43 (16%), Positives = 18/43 (41%), Gaps = 7/43 (16%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIII 147
+ +R K L P+ G P+++ ++ E+++
Sbjct: 8 RSSRMG-----GDKALLPLGGKPLLERVLDRLRPAG--DEVVV 43
>gnl|CDD|233272 TIGR01099, galU, UTP-glucose-1-phosphate uridylyltransferase.
Built to distinquish between the highly similar genes
galU and galF [Cell envelope, Biosynthesis and
degradation of surface polysaccharides and
lipopolysaccharides].
Length = 260
Score = 35.0 bits (81), Expect = 0.078
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 106 GTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIII 147
GTRF P + PK + P+ P+IQ+ +E V+ +++I+I
Sbjct: 11 GTRFLPATKAIPKEMLPIVDKPLIQYVVEEAVEA-GIEDILI 51
>gnl|CDD|184189 PRK13627, PRK13627, carnitine operon protein CaiE; Provisional.
Length = 196
Score = 34.4 bits (79), Expect = 0.080
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 26/86 (30%)
Query: 391 IHSSASVHPTAIVGPNVSIDDGAVIGP---------------GVRIKESIILQG------ 429
+H +A VHP+A++ +V + G IGP G +++ I+ G
Sbjct: 13 VHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDT 72
Query: 430 -----ASIGNHSLVLNSIVGRNSKVG 450
IG+ +++ ++GR++ VG
Sbjct: 73 IVGENGHIGHGAILHGCVIGRDALVG 98
>gnl|CDD|184007 PRK13368, PRK13368, 3-deoxy-manno-octulosonate
cytidylyltransferase; Provisional.
Length = 238
Score = 34.6 bits (80), Expect = 0.091
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 118 KPLFPVAGLPMIQHHIEACVQVPNLKEIII 147
KPL + G PMIQH E Q ++E+ +
Sbjct: 19 KPLLDILGKPMIQHVYERAAQAAGVEEVYV 48
>gnl|CDD|100053 cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This
family is composed of maltose O-acetyltransferase,
galactoside O-acetyltransferase (GAT), xenobiotic
acyltransferase (XAT) and similar proteins. MAT and GAT
catalyze the CoA-dependent acetylation of the 6-hydroxyl
group of their respective sugar substrates. MAT
acetylates maltose and glucose exclusively while GAT
specifically acetylates galactopyranosides. XAT
catalyzes the CoA-dependent acetylation of a variety of
hydroxyl-bearing acceptors such as chloramphenicol and
streptogramin, among others. XATs are implicated in
inactivating xenobiotics leading to xenobiotic
resistance in patients. Members of this family contain a
a left-handed parallel beta-helix (LbH) domain with at
least 5 turns, each containing three imperfect tandem
repeats of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their
active form.
Length = 109
Score = 32.4 bits (75), Expect = 0.14
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 10/48 (20%)
Query: 402 IVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVL-----NSIVG 444
++G +V I VI PGV I + GA +G S+V NSIV
Sbjct: 60 VIGDDVWIGANVVILPGVTIGD-----GAVVGAGSVVTKDVPPNSIVA 102
Score = 29.7 bits (68), Expect = 1.1
Identities = 26/110 (23%), Positives = 40/110 (36%), Gaps = 40/110 (36%)
Query: 385 TIGD-VYIHSSASVHPTAIVGPNVSIDDGAVIGPGV------------------------ 419
+IGD VYI + ++I D +IGP V
Sbjct: 3 SIGDNVYIGPGCVISAGG----GITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAP 58
Query: 420 -RIKE-------SIILQGASIGNHSLV-LNSIVGRNSKVGNWSRVEGTPC 460
I + +IL G +IG+ ++V S+V ++ V S V G P
Sbjct: 59 IVIGDDVWIGANVVILPGVTIGDGAVVGAGSVVTKD--VPPNSIVAGNPA 106
>gnl|CDD|133011 cd02518, GT2_SpsF, SpsF is a glycosyltrnasferase implicated in the
synthesis of the spore coat. Spore coat polysaccharide
biosynthesis protein F (spsF) is a glycosyltransferase
implicated in the synthesis of the spore coat in a
variety of bacteria challenged by stress as starvation.
The spsF gene is expressed in the late stage of coat
development responsible for a terminal step in coat
formation that involves the glycosylation of the coat.
SpsF gene mutation resulted in spores that appeared
normal. But, the spores tended to aggregate and had
abnormal adsorption properties, indicating a surface
alteration.
Length = 233
Score = 33.7 bits (78), Expect = 0.14
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 118 KPLFPVAGLPMIQHHIEACVQVPNLKEIII 147
K L P+ G P+++H ++ + + EI+I
Sbjct: 16 KVLKPLGGKPLLEHLLDRLKRSKLIDEIVI 45
>gnl|CDD|234670 PRK00155, ispD, 2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase; Reviewed.
Length = 227
Score = 33.6 bits (78), Expect = 0.16
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMV 164
KG+R D PK P+ G P+++H +EA + P + EII++ P D F ++
Sbjct: 13 KGSRMGA---DRPKQYLPLGGKPILEHTLEAFLAHPRIDEIIVVV--PPDDRPDFAELLL 67
Query: 165 QEYK 168
+
Sbjct: 68 AKDP 71
>gnl|CDD|224131 COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope
biogenesis, outer membrane].
Length = 291
Score = 34.0 bits (79), Expect = 0.16
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 106 GTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIII 147
GTRF P + PK + P+ P+IQ+ +E V ++EI+I
Sbjct: 15 GTRFLPATKAIPKEMLPIVDKPLIQYIVEEAVAA-GIEEILI 55
>gnl|CDD|131340 TIGR02287, PaaY, phenylacetic acid degradation protein PaaY.
Members of this family are located next to other genes
organized into apparent operons for phenylacetic acid
degradation. PaaY is located near the end of these gene
clusters and often next to PaaX, a transcriptional
regulator [Energy metabolism, Other].
Length = 192
Score = 33.3 bits (76), Expect = 0.18
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 28/87 (32%)
Query: 391 IHSSASVHPTAIVGPNVSIDDGAVIGP---------------GVRIKESIILQG------ 429
+H A VHPTA++ +V + +GP G I+++ ++ G
Sbjct: 11 VHPEAYVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDT 70
Query: 430 -----ASIGNHSLVLNS-IVGRNSKVG 450
+G H +L+ IVGRN+ VG
Sbjct: 71 VVEENGHVG-HGAILHGCIVGRNALVG 96
>gnl|CDD|235473 PRK05450, PRK05450, 3-deoxy-manno-octulosonate
cytidylyltransferase; Provisional.
Length = 245
Score = 33.6 bits (78), Expect = 0.21
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 9/42 (21%)
Query: 107 TRFRPLSLDSP-KPLFPVAGLPMIQHHIEACVQVPNLKEIII 147
TR P KPL + G PMI E + +++
Sbjct: 14 TRL-------PGKPLADIGGKPMIVRVYERASKA-GADRVVV 47
>gnl|CDD|200082 TIGR01172, cysE, serine O-acetyltransferase. Cysteine biosynthesis
[Amino acid biosynthesis, Serine family].
Length = 162
Score = 32.3 bits (74), Expect = 0.31
Identities = 28/83 (33%), Positives = 35/83 (42%), Gaps = 24/83 (28%)
Query: 397 VHPTAIVGPNVSIDDG--------AVIGPGVRIKESIILQGAS---------------IG 433
+HP A +G V ID G AVIG V I + L G IG
Sbjct: 64 IHPGARIGRGVFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKEKGKRHPTIGEGVMIG 123
Query: 434 NHSLVLNSI-VGRNSKVGNWSRV 455
+ VL +I VG N+K+G S V
Sbjct: 124 AGAKVLGNIEVGENAKIGANSVV 146
>gnl|CDD|182235 PRK10092, PRK10092, maltose O-acetyltransferase; Provisional.
Length = 183
Score = 32.1 bits (73), Expect = 0.38
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 403 VGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRN 446
+G NV I AVI PGV I +++++ ++ + N +VG N
Sbjct: 132 IGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKDVPDNVVVGGN 175
>gnl|CDD|100041 cd03350, LbH_THP_succinylT,
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP)
N-succinyltransferase (also called THP
succinyltransferase): THDP N-succinyltransferase
catalyzes the conversion of tetrahydrodipicolinate and
succinyl-CoA to N-succinyltetrahydrodipicolinate and
CoA. It is the committed step in the succinylase pathway
by which bacteria synthesize L-lysine and
meso-diaminopimelate, a component of peptidoglycan. The
enzyme is homotrimeric and each subunit contains an
N-terminal region with alpha helices and hairpin loops,
as well as a C-terminal region with a left-handed
parallel alpha-helix (LbH) structural motif encoded by
hexapeptide repeat motifs.
Length = 139
Score = 31.6 bits (72), Expect = 0.40
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 388 DVYIHSSASVHPTAIVGPNVSIDDGAVIGPGV----RIKESIILQGASIGNHSLVLNS-I 442
+ S A+V A +G NV + GAVIG GV + II IG + V+ I
Sbjct: 37 GTMVDSWATVGSCAQIGKNVHLSAGAVIG-GVLEPLQATPVIIEDDVFIGANCEVVEGVI 95
Query: 443 VGRNSKVG 450
VG+ + +
Sbjct: 96 VGKGAVLA 103
Score = 28.1 bits (63), Expect = 5.4
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 400 TAIVGPNVSIDDGAVIGPGVRIKE-SIILQGASIGNHSLV-LNSIVGRNSKVG 450
V P I DGA IGPG + S + GA + ++V + VG +++G
Sbjct: 1 GRRVPPGAIIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIG 53
>gnl|CDD|100063 cd05825, LbH_wcaF_like, wcaF-like: This group is composed of the
protein product of the E. coli wcaF gene and similar
proteins. WcaF is part of the gene cluster responsible
for the biosynthesis of the extracellular polysaccharide
colanic acid. The wcaF protein is predicted to contain a
left-handed parallel beta-helix (LbH) domain encoded by
imperfect tandem repeats of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing
hexapeptide repeats are often enzymes showing
acyltransferase activity. Many are trimeric in their
active forms.
Length = 107
Score = 31.0 bits (71), Expect = 0.40
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 389 VYIHSSASVHPTAIVGPNVSIDDGAVIGPG 418
+ I A V A VGP V+I +GAV+G
Sbjct: 57 IVIGDGAWVAAEAFVGPGVTIGEGAVVGAR 86
Score = 29.9 bits (68), Expect = 0.89
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 18/67 (26%)
Query: 402 IVGPNVSIDDGA------VIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRV 455
++ + I DGA +GPGV I E GA +G S+V+ + W+
Sbjct: 52 LITAPIVIGDGAWVAAEAFVGPGVTIGE-----GAVVGARSVVVRD-------LPAWTVY 99
Query: 456 EGTPCDP 462
G P P
Sbjct: 100 AGNPAVP 106
>gnl|CDD|224134 COG1213, COG1213, Predicted sugar nucleotidyltransferases [Cell
envelope biogenesis, outer membrane].
Length = 239
Score = 32.3 bits (74), Expect = 0.51
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Query: 106 GTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIII--LGYY 151
G+R P D PK L V G +I IE + E ++ GY
Sbjct: 14 GSRLGP---DIPKALVEVGGREIIYRTIENLAKAGI-TEFVVVTNGYR 57
>gnl|CDD|133015 cd02524, G1P_cytidylyltransferase, G1P_cytidylyltransferase
catalyzes the production of CDP-D-Glucose.
Alpha-D-Glucose-1-phosphate Cytidylyltransferase
catalyzes the production of CDP-D-Glucose from
alpha-D-Glucose-1-phosphate and MgCTP as substrate.
CDP-D-Glucose is the precursor for synthesizing four of
the five naturally occurring 3,6-dideoxy sugars-abequose
(3,6-dideoxy-D-Xylo-hexose), ascarylose
(3,6-dideoxy-L-arabino-hexose), paratose
(3,6-dideoxy-D-ribohexose), and tyvelose
(3,6-dideoxy-D-arabino-hexose. Deoxysugars are
ubiquitous in nature where they function in a variety of
biological processes, including cell adhesion, immune
response, determination of ABO blood groups,
fertilization, antibiotic function, and microbial
pathogenicity.
Length = 253
Score = 32.2 bits (74), Expect = 0.54
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQH 131
GTR + PKP+ + G P++ H
Sbjct: 8 LGTRLSEETELKPKPMVEIGGRPILWH 34
>gnl|CDD|100047 cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and
Galactoside O-acetyltransferase (GAT): MAT and GAT
catalyze the CoA-dependent acetylation of the 6-hydroxyl
group of their respective sugar substrates. MAT
acetylates maltose and glucose exclusively at the C6
position of the nonreducing end glucosyl moiety. GAT
specifically acetylates galactopyranosides. Furthermore,
MAT shows higher affinity toward artificial substrates
containing an alkyl or hydrophobic chain as well as a
glucosyl unit. Active MAT and GAT are homotrimers, with
each subunit consisting of an N-terminal alpha-helical
region and a C-terminal left-handed parallel alpha-helix
(LbH) subdomain with 6 turns, each containing three
imperfect tandem repeats of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X).
Length = 169
Score = 31.6 bits (73), Expect = 0.54
Identities = 26/100 (26%), Positives = 33/100 (33%), Gaps = 41/100 (41%)
Query: 385 TIGD-VYIHSSASVHPTAIVGPNVSI------------DDGAVIGPGVRIKE-------S 424
TIGD V I GPNV I + G + I +
Sbjct: 84 TIGDNVLI------------GPNVQIYTAGHPLDPEERNRGLEYAKPITIGDNVWIGGGV 131
Query: 425 IILQGASIGNHSLVLNSIVGRNSKV----GNWSRVEGTPC 460
IIL G +IG+ NS++G S V G P
Sbjct: 132 IILPGVTIGD-----NSVIGAGSVVTKDIPANVVAAGNPA 166
Score = 30.9 bits (71), Expect = 0.92
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 13/59 (22%)
Query: 367 QLYKTRHP----ERLQCSSQCK--TIGD-VYIHSSASVHPTAIVGPNVSIDDGAVIGPG 418
Q+Y HP ER + K TIGD V+I I+ P V+I D +VIG G
Sbjct: 96 QIYTAGHPLDPEERNRGLEYAKPITIGDNVWIGGGV------IILPGVTIGDNSVIGAG 148
>gnl|CDD|184021 PRK13389, PRK13389, UTP--glucose-1-phosphate uridylyltransferase
subunit GalU; Provisional.
Length = 302
Score = 32.2 bits (73), Expect = 0.54
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 11/86 (12%)
Query: 106 GTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQK-----FV 160
GTR P + PK + P+ P+IQ+ + C+ + EI+++ + ++ F
Sbjct: 19 GTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAA-GITEIVLVTHSSKNSIENHFDTSFE 77
Query: 161 LDMVQEYKINIRYLQEFWDIIHQQIC 186
L+ + E ++ + L E Q IC
Sbjct: 78 LEAMLEKRVKRQLLDEV-----QSIC 98
>gnl|CDD|133003 cd02509, GDP-M1P_Guanylyltransferase, GDP-M1P_Guanylyltransferase
catalyzes the formation of GDP-Mannose.
GDP-mannose-1-phosphate guanylyltransferase, also called
GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the
formation of GDP-Mannose from mannose-1-phosphate and
GTP. Mannose is a key monosaccharide for glycosylation
of proteins and lipids. GDP-Mannose is the activated
donor for mannosylation of various biomolecules. This
enzyme is known to be bifunctional, as both
mannose-6-phosphate isomerase and mannose-1-phosphate
guanylyltransferase. This CD covers the N-terminal
GDP-mannose-1-phosphate guanylyltransferase domain,
whereas the isomerase function is located at the
C-terminal half. GDP-MP is a member of the
nucleotidyltransferase family of enzymes.
Length = 274
Score = 31.8 bits (73), Expect = 0.71
Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 105 KGTRFRPLSLDS-PKPLFPVAG-LPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLD 162
GTR PLS +S PK + G ++Q ++ + I+++ + + + V +
Sbjct: 10 SGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVT---NEEYRFLVRE 66
Query: 163 MVQEYKINIRYLQE 176
+ E + E
Sbjct: 67 QLPEGLPEENIILE 80
>gnl|CDD|100052 cd04646, LbH_Dynactin_6, Dynactin 6 (or subunit p27): Dynactin is a
major component of the activator complex that stimulates
dynein-mediated vesicle transport. Dynactin is a
heterocomplex of at least eight subunits, including a
150,000-MW protein called Glued, the actin-capping
protein Arp1, and dynamatin. In vitro binding
experiments show that dynactin enhances dynein-dependent
motility, possibly through interaction with microtubules
and vesicles. Subunit p27 is part of the pointed-end
subcomplex in dynactin that also includes p25, p26, and
Arp11. This subcomplex interacts with membranous
cargoes. p25 and p27 contain the imperfect tandem
repeats of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed
parallel beta helix (LbH) structural domain. Proteins
containing hexapeptide repeats are often enzymes showing
acyltransferase activity.
Length = 164
Score = 31.1 bits (71), Expect = 0.79
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 379 CSSQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIIL 427
C + IG+ + + VG NV I DG +IG G ++ S IL
Sbjct: 79 CKCEALKIGNNNV-----FESKSFVGKNVIITDGCIIGAGCKLPSSEIL 122
>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated.
Length = 540
Score = 32.0 bits (73), Expect = 0.79
Identities = 15/49 (30%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 79 PTSFPGLTQTFVSCGWTTNDTTPGPLKGTRFRPLSLDSPKPLFPVAGLP 127
P + P L V D TP P G R + +L P P AG
Sbjct: 131 PDALPPLRAIAVVDD--AADATPAPAPGARVQLFALPDPAPP-AAAGER 176
>gnl|CDD|233832 TIGR02353, NRPS_term_dom, non-ribosomal peptide synthetase terminal
domain of unknown function. This domain is found
exclusively in non-ribosomal peptide synthetases and
always as the final domain in the polypeptide. This
domain is roughly 700 amino acids in size and is found
in polypeptides roughly twice that size.
Length = 695
Score = 31.6 bits (72), Expect = 1.1
Identities = 20/125 (16%), Positives = 40/125 (32%), Gaps = 22/125 (17%)
Query: 330 IIMPLAGSGKAYVYQTSKWWSQLKSA--------GSAIYANR---HYLQLYKTRHPERLQ 378
++ + G+ YV+ + + +YA+ H+ + + + +
Sbjct: 302 LLNLVLKPGRYYVHSGFYYQAWTVQQLMDNSRVLLFPLYASSYIPHWYRALGAKIGKVAE 361
Query: 379 CSSQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLV 438
SS + D+ +G I DG ++G L IG S +
Sbjct: 362 ISSAQHEVPDL-----------TDIGEETFIADGLLMGNARLSGGWFRLGRTRIGRRSFL 410
Query: 439 LNSIV 443
NS
Sbjct: 411 GNSGY 415
Score = 31.6 bits (72), Expect = 1.1
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 407 VSIDDGAVIGPGVRIKESIILQGASIGNHS-LVLNSIVGRNSKVGNWSRVEGTP 459
V+I DGA +GPG +I+L G +G S L +S+V + +V +R G P
Sbjct: 646 VTIGDGATLGPG-----AIVLYGVVMGEGSVLGPDSLVMKGEEVPAHTRWRGNP 694
Score = 31.6 bits (72), Expect = 1.3
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 10/52 (19%)
Query: 385 TIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHS 436
TIGD A++ P AIV V + +G+V+GP S++++G + H+
Sbjct: 647 TIGD-----GATLGPGAIVLYGVVMGEGSVLGPD-----SLVMKGEEVPAHT 688
Score = 28.9 bits (65), Expect = 7.8
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 386 IGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPG 418
G V + A + + + + SI DGA +G G
Sbjct: 158 TGPVTLGRDAFIGTRSTLDIDTSIGDGAQLGHG 190
>gnl|CDD|224132 COG1211, IspD, 4-diphosphocytidyl-2-methyl-D-erithritol synthase
[Lipid metabolism].
Length = 230
Score = 31.0 bits (71), Expect = 1.2
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIII 147
G+R PK + G P+++H +EA ++ P + EI++
Sbjct: 14 FGSRM---GNPVPKQYLELGGRPLLEHTLEAFLESPAIDEIVV 53
>gnl|CDD|223906 COG0836, {ManC}, Mannose-1-phosphate guanylyltransferase [Cell
envelope biogenesis, outer membrane].
Length = 333
Score = 31.1 bits (71), Expect = 1.4
Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 105 KGTRFRPLSLDS-PKPLFPVAG-LPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLD 162
G+R PLS PK + G L ++Q ++ + +++E +++ + + V +
Sbjct: 11 SGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVV---TNEKYRFIVKE 67
Query: 163 MVQEYKINI 171
+ E I
Sbjct: 68 QLPEIDIEN 76
>gnl|CDD|182252 PRK10122, PRK10122, GalU regulator GalF; Provisional.
Length = 297
Score = 31.0 bits (70), Expect = 1.4
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 106 GTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIIL 148
G P + PK + P+ PMIQ+ ++ V +KEI+++
Sbjct: 14 GMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAA-GIKEIVLV 55
>gnl|CDD|100055 cd04650, LbH_FBP, Ferripyochelin Binding Protein (FBP): FBP is an
outer membrane protein which plays a role in iron
acquisition. It binds iron when it is complexed with
pyochelin. It adopts the left-handed parallel beta-helix
(LbH) structure, and contains imperfect tandem repeats
of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing
hexapeptide repeats are often enzymes showing
acyltransferase activity. Acyltransferase activity has
not been observed in this group.
Length = 154
Score = 29.8 bits (67), Expect = 1.8
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 9/62 (14%)
Query: 386 IGD-VYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIIL-------QGASIGNHSL 437
IGD V I +A VH A VG V + GA++ G +I + +I+ G I ++SL
Sbjct: 64 IGDYVTIGHNAVVH-GAKVGNYVIVGMGAILLNGAKIGDHVIIGAGAVVTPGKEIPDYSL 122
Query: 438 VL 439
VL
Sbjct: 123 VL 124
>gnl|CDD|225175 COG2266, COG2266, GTP:adenosylcobinamide-phosphate
guanylyltransferase [Coenzyme metabolism].
Length = 177
Score = 30.0 bits (68), Expect = 1.8
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 6/32 (18%)
Query: 105 KGTRFRPLSLDSP-KPLFPVAGLPMIQHHIEA 135
+GTR + P KPL V G P+I +EA
Sbjct: 10 RGTR-----MGRPEKPLLEVCGKPLIDRVLEA 36
>gnl|CDD|100059 cd05635, LbH_unknown, Uncharacterized proteins, Left-handed
parallel beta-Helix (LbH) domain: Members in this group
are uncharacterized bacterial proteins containing a LbH
domain with multiple turns, each containing three
imperfect tandem repeats of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing
hexapeptide repeats are often enzymes showing
acyltransferase activity.
Length = 101
Score = 28.8 bits (65), Expect = 2.2
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 387 GDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHS 436
G +YI A + P A++ V I G+ + G RI +IG
Sbjct: 10 GPIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYG-----NTTIGPTC 54
>gnl|CDD|213532 TIGR00453, ispD, 2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase. Members of this protein family
are 2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase, the IspD protein of the
deoxyxylulose pathway of IPP biosynthesis. In about
twenty percent of bacterial genomes, this protein occurs
as IspDF, a bifunctional fusion protein [Biosynthesis of
cofactors, prosthetic groups, and carriers, Other].
Length = 217
Score = 29.9 bits (68), Expect = 2.3
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIII 147
+GTRF PK + G P+++H ++A + P + E+++
Sbjct: 9 RGTRFGS---GVPKQYLELGGRPLLEHALDAFLAHPAIDEVVV 48
>gnl|CDD|133019 cd02538, G1P_TT_short, G1P_TT_short is the short form of
glucose-1-phosphate thymidylyltransferase. This family
is the short form of glucose-1-phosphate
thymidylyltransferase. Glucose-1-phosphate
thymidylyltransferase catalyses the formation of
dTDP-glucose, from dTTP and glucose 1-phosphate. It is
the first enzyme in the biosynthesis of dTDP-L-rhamnose,
a cell wall constituent and a feedback inhibitor of the
enzyme.There are two forms of Glucose-1-phosphate
thymidylyltransferase in bacteria and archeae; short
form and long form. The homotetrameric, feedback
inhibited short form is found in numerous bacterial
species that produce dTDP-L-rhamnose. The long form,
which has an extra 50 amino acids c-terminal, is found
in many species for which it serves as a
sugar-activating enzyme for antibiotic biosynthesis and
or other, unknown pathways, and in which dTDP-L-rhamnose
is not necessarily produced.
Length = 240
Score = 29.9 bits (68), Expect = 2.5
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIIL 148
GTR PL+ K L PV PMI + + + ++EI+I+
Sbjct: 10 SGTRLYPLTKVVSKQLLPVYDKPMIYYPLSTLMLA-GIREILII 52
>gnl|CDD|133006 cd02513, CMP-NeuAc_Synthase, CMP-NeuAc_Synthase activates
N-acetylneuraminic acid by adding CMP moiety.
CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc
synthetase) or acylneuraminate cytidylyltransferase
catalyzes the transfer the CMP moiety of CTP to the
anomeric hydroxyl group of NeuAc in the presence of
Mg++. It is the second to last step in the sialylation
of the oligosaccharide component of glycoconjugates by
providing the activated sugar-nucleotide cytidine
5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac),
the substrate for sialyltransferases. Eukaryotic
CMP-NeuAc synthetases are predominantly located in the
nucleus. The activated CMP-Neu5Ac diffuses from the
nucleus into the cytoplasm.
Length = 223
Score = 29.8 bits (68), Expect = 3.1
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 118 KPLFPVAGLPMIQHHIEACVQVPNLKEIII 147
K + P+ G P+I IEA ++ +++
Sbjct: 18 KNIRPLGGKPLIAWTIEAALESKLFDRVVV 47
>gnl|CDD|133000 cd02503, MobA, MobA catalyzes the formation of molybdopterin
guanine dinucleotide. The prokaryotic enzyme
molybdopterin-guanine dinucleotide biosynthesis protein
A (MobA). All mononuclear molybdoenzymes bind molybdenum
in complex with an organic cofactor termed molybdopterin
(MPT). In many bacteria, including Escherichia coli,
molybdopterin can be further modified by attachment of a
GMP group to the terminal phosphate of molybdopterin to
form molybdopterin guanine dinucleotide (MGD). This GMP
attachment step is catalyzed by MobA, by linking a
guanosine 5'-phosphate to MPT forming molybdopterin
guanine dinucleotide. This reaction requires GTP, MgCl2,
and the MPT form of the cofactor. It is a reaction
unique to prokaryotes, and therefore may represent a
potential drug target.
Length = 181
Score = 29.5 bits (67), Expect = 3.3
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 7/43 (16%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIII 147
K R K L + G P+++H +E P + E++I
Sbjct: 10 KSRRM-----GGDKALLELGGKPLLEHVLERL--KPLVDEVVI 45
>gnl|CDD|225082 COG2171, DapD, Tetrahydrodipicolinate N-succinyltransferase [Amino
acid transport and metabolism].
Length = 271
Score = 29.6 bits (67), Expect = 4.1
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 18/79 (22%)
Query: 395 ASVHPTAIVGPNVSIDDGAVIG----PG----VRIKE-------SIILQGASIGNHSLV- 438
ASV A VG N I GA IG P V I + S +++G +G+ +V
Sbjct: 151 ASVGSCAQVGKNSHIGGGASIGGVLEPLQANPVIIGDNCLIGANSEVVEGVIVGDGCVVA 210
Query: 439 LNSIVGRNSKVGNWSRVEG 457
+ +++K+ + RV G
Sbjct: 211 AGVFITQDTKI--YDRVAG 227
>gnl|CDD|100040 cd03349, LbH_XAT, Xenobiotic acyltransferase (XAT): The XAT class
of hexapeptide acyltransferases is composed of a large
number of microbial enzymes that catalyze the
CoA-dependent acetylation of a variety of
hydroxyl-bearing acceptors such as chloramphenicol and
streptogramin, among others. Members of this class of
enzymes include Enterococcus faecium streptogramin A
acetyltransferase and Pseudomonas aeruginosa
chloramphenicol acetyltransferase. They contain repeated
copies of a six-residue hexapeptide repeat sequence
motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a
left-handed parallel beta helix (LbH) structure. The
active enzyme is a trimer with CoA and substrate binding
sites at the interface of two separate LbH subunits.
XATs are implicated in inactivating xenobiotics leading
to xenobiotic resistance in patients.
Length = 145
Score = 28.7 bits (65), Expect = 4.2
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 10/48 (20%)
Query: 402 IVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLN-----SIVG 444
I+G +V I GA I PGV I + GA I ++V +IVG
Sbjct: 75 IIGNDVWIGHGATILPGVTIGD-----GAVIAAGAVVTKDVPPYAIVG 117
>gnl|CDD|236492 PRK09382, ispDF, bifunctional 2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase/2-C-methyl-D-erythritol
2,4-cyclodiphosphate synthase protein; Provisional.
Length = 378
Score = 29.4 bits (67), Expect = 4.9
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIII 147
+ TRF S + K + G P+ H +E P KEI++
Sbjct: 15 RSTRF---SAEVKKQWLRIGGKPLWLHVLENLSSAPAFKEIVV 54
>gnl|CDD|182987 PRK11132, cysE, serine acetyltransferase; Provisional.
Length = 273
Score = 28.9 bits (65), Expect = 5.4
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 10/87 (11%)
Query: 409 IDDGAVIGPGVRIKESI-ILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPNKA 467
I +G +IG G +I +I + +GA IG S+VL + + G +R+ G P P+
Sbjct: 196 IREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQPVPPHTTAAGVPARIVGKPESDKPS-- 253
Query: 468 FAKMDNPPLFNSNGKLNPSITILGDGV 494
MD FN N + GDG+
Sbjct: 254 ---MDMDQHFNGI---NHTF-EYGDGI 273
>gnl|CDD|233520 TIGR01669, phage_XkdX, phage uncharacterized protein, XkdX family.
This model represents a family of small (about 50 amino
acid) phage proteins, found in at least 12 different
phage and prophage regions of Gram-positive bacteria. In
a number of these phage, the gene for this protein is
found near the holin and endolysin genes [Mobile and
extrachromosomal element functions, Prophage functions].
Length = 45
Score = 26.4 bits (58), Expect = 5.7
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 142 LKEIIILGYYPSADLQKFV 160
+K + GYY + D+ KFV
Sbjct: 9 VKTYYLWGYYSNEDVNKFV 27
>gnl|CDD|215133 PLN02241, PLN02241, glucose-1-phosphate adenylyltransferase.
Length = 436
Score = 29.1 bits (66), Expect = 6.8
Identities = 16/86 (18%), Positives = 34/86 (39%), Gaps = 28/86 (32%)
Query: 385 TIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGAS------------- 431
I + ++VG IG GV I++++++ GA
Sbjct: 317 IISHGCFLRECKIE-HSVVGLRS------RIGEGVEIEDTVMM-GADYYETEEEIASLLA 368
Query: 432 -------IGNHSLVLNSIVGRNSKVG 450
IG ++ + N+I+ +N+++G
Sbjct: 369 EGKVPIGIGENTKIRNAIIDKNARIG 394
>gnl|CDD|237689 PRK14359, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 430
Score = 28.8 bits (65), Expect = 7.1
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 406 NVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRV 455
V + + GVRI ++ + I HS++ SI+ NS VG + +
Sbjct: 259 GVEFEGECELEEGVRILGKSKIENSHIKAHSVIEESII-ENSDVGPLAHI 307
>gnl|CDD|223817 COG0746, MobA, Molybdopterin-guanine dinucleotide biosynthesis
protein A [Coenzyme metabolism].
Length = 192
Score = 28.4 bits (64), Expect = 7.8
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 6/31 (19%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEA 135
K R R K L P+ G P+I+H I+
Sbjct: 14 KSRRMRD------KALLPLNGRPLIEHVIDR 38
>gnl|CDD|200016 TIGR00454, TIGR00454, TIGR00454 family protein. At this time this
gene appears to be present only in Archea [Hypothetical
proteins, Conserved].
Length = 175
Score = 28.0 bits (62), Expect = 8.4
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEA 135
KGTR + KPL V G +I H +
Sbjct: 9 KGTRLGGVE----KPLIEVCGRCLIDHVLSP 35
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.135 0.415
Gapped
Lambda K H
0.267 0.0804 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,333,111
Number of extensions: 2527771
Number of successful extensions: 2390
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2167
Number of HSP's successfully gapped: 224
Length of query: 523
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 422
Effective length of database: 6,457,848
Effective search space: 2725211856
Effective search space used: 2725211856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.1 bits)