RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17795
(523 letters)
>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase;
beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*
Length = 401
Score = 135 bits (342), Expect = 3e-35
Identities = 74/416 (17%), Positives = 136/416 (32%), Gaps = 84/416 (20%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMV 164
G R P++ PK P+ P+I++ IE + +I+ +
Sbjct: 10 SGERLEPITHTRPKAFVPILSKPLIEYQIEYLRKCGIRDITVIVSSKNK--------EYF 61
Query: 165 QEYKINIRY-LQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEA-------VY 216
++ I Q+ + T G + A +
Sbjct: 62 EKKLKEISIVTQK------DD----IKGT---------G------AAILSAKFNDEALII 96
Query: 217 F--TLEIRSDVVILMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPS 274
+ + + +L AI+ ++ YG +V Q + +S +EKP
Sbjct: 97 YGDLFFSNEKEICNIITLKENAIIGVKVS-NPKD-----YGVLVLDNQ-NNLSKIIEKPE 149
Query: 275 TFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPL 334
S L+N G+Y + DIF + + S++ E TD I L +
Sbjct: 150 IPPSNLINAGIYKLNSDIFTYLDKISISERGELEL---------TDA--INL-------M 191
Query: 335 AGSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQLYKTRHPERLQCSSQCKTIGDVYIHSS 394
A + V + +W + + I N+ L K G V I
Sbjct: 192 AKDHRVKVIEYEGYWMDIGKPWNIIDVNKWALD-NLVFSQNLGNVEDNVKIKGKVIIEED 250
Query: 395 ASVHPTAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVLNSIVGRNSKVGNWS 453
A + + V I G+ IGP ++ +I+++ IG V S++ SK+ + S
Sbjct: 251 AEIKSGTYIEGPVYIGKGSEIGPNSYLRPYTILVEKNKIGASVEVKESVIMEGSKIPHLS 310
Query: 454 RVE------------GT-PCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTV 496
V GT + ++ K++ S+G+ +G V
Sbjct: 311 YVGDSVIAEDVNFGAGTLIANLRFDEKEVKVNVKGKRISSGR-RKLGAFIGGHVRT 365
>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure,
CTP:phosphocholine cytidylyltransferase; 1.50A
{Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A*
Length = 254
Score = 74.8 bits (184), Expect = 3e-15
Identities = 36/243 (14%), Positives = 81/243 (33%), Gaps = 46/243 (18%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMV 164
GTR RPL+ ++PK L V P+I++ IE + + +III+ Y L++ +
Sbjct: 35 LGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEK-GINDIIIIVGY----LKEQFDYLK 89
Query: 165 QEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYFTLEIRSD 224
++Y + + + + Y + + Y +Y V+E + + I +D
Sbjct: 90 EKYGVRLVFNDK-----------------YADYNNFYSLYL-----VKEELANSYVIDAD 127
Query: 225 VVILMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCG 284
+ + + T + + +V ++ + + + G
Sbjct: 128 NYLFKNMFRNDLTRSTYFSVYREDCTN--EWFLVYGDD-YKVQDIIVDSK---AGRILSG 181
Query: 285 VYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQ 344
V + + I F + Y+ + ++ YV +
Sbjct: 182 VSFWDAPTAEKIV--------SFIDKAYVSGEFVDLY-----WDNMVKDNIKELDVYVEE 228
Query: 345 TSK 347
Sbjct: 229 LEG 231
>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol,
DI-MYO-inositol phosphate; 1.89A {Archaeoglobus
fulgidus} PDB: 2xmh_A*
Length = 232
Score = 65.7 bits (161), Expect = 2e-12
Identities = 31/252 (12%), Positives = 66/252 (26%), Gaps = 70/252 (27%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIII-LGYYPSADLQKFVLDM 163
GTR + PKPL V G +I ++ ++ E II Y D
Sbjct: 28 LGTRLGGV----PKPLVRVGGCEIILRTMKLLSP--HVSEFIIVASRYA---------DD 72
Query: 164 VQEYKINIRYLQEFWD--IIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYFTLEI 221
+ + + ++ I+ R + + + V++ T+
Sbjct: 73 IDAF-----LKDKGFNYKIVRHD----------RPEKGNGYSLLVAKNHVEDRFILTM-- 115
Query: 222 RSDVVI---LMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVS 278
D V + ++ I + ++ +
Sbjct: 116 -GDHVYSQQFIEKAVRGEGVIADREPR--FVDIGEATKIRVED--GRVAKIGKDLRE--F 168
Query: 279 TLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSG 338
V+ G ++ IF++ K D E+ + +
Sbjct: 169 DCVDTGFFVLDDSIFEHAE-------------------KLRDR-----EEIPLSEIVKLA 204
Query: 339 K-AYVYQTSKWW 349
+ Y + W
Sbjct: 205 RLPVTYVDGELW 216
>1914_A Signal recognition particle 9/14 fusion protein; ALU domain, RNA
binding, signal recognition particle (SRP), translation
regulation; 2.53A {Mus musculus} SCOP: d.49.1.1 d.49.1.1
PDB: 1e8o_A* 1e8s_A 1ry1_C*
Length = 232
Score = 64.6 bits (157), Expect = 6e-12
Identities = 20/41 (48%), Positives = 30/41 (73%)
Query: 17 DNARYSMKYDHKNGYLKLKMTDDNVCLIYKTEMSQDLKKID 57
R +KY H +G L +K+TDD VCL+Y+T+ +QD+KKI+
Sbjct: 169 MKVRVVLKYRHVDGNLCIKVTDDLVCLVYRTDQAQDVKKIE 209
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 65.1 bits (158), Expect = 4e-11
Identities = 85/508 (16%), Positives = 140/508 (27%), Gaps = 216/508 (42%)
Query: 29 NGYLK-LKMTDDNVCLIYKT----------EMSQDLKKI-----DNAKKHVESCDF-DW- 70
+ Y + L+ +Y+T ++ L ++ D K + + +W
Sbjct: 167 DDYFEELRD-------LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL 219
Query: 71 -GPSEGHK------IPTSFP--GLTQT---FVSC---GWTTNDTTPGPLKGT-------- 107
PS IP S P G+ Q V+ G+T + LKG
Sbjct: 220 ENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRS-YLKGATGHSQGLV 278
Query: 108 ------------RFRPLSLDSPKPLF----------PVAGLP--MIQHHIEACVQVPN-- 141
F + LF P LP +++ +E VP+
Sbjct: 279 TAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM 338
Query: 142 LKEIIILGYYPSADLQKFVLDMVQEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTY 201
L I +Q +V K N +L +Q+ ISL N
Sbjct: 339 LS---ISN-LTQEQVQDYVN------KTN-SHLPA-----GKQVEISLV-----NGA--- 374
Query: 202 GIYRNSLHWVQEAVYFTLEIRSDVVI--LMHSLYSMAI-LVTVMATEATRQQSVYYGCIV 258
+N +V+ SLY + + L A Q
Sbjct: 375 ---KN------------------LVVSGPPQSLYGLNLTLRKAKAPSGLDQ--------- 404
Query: 259 RKQQTSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKD 318
S I K F + F +A+ F S +V D
Sbjct: 405 -----SRIPFSERKL-KFSNR-------------FLPVASPFHSH--------LLVPASD 437
Query: 319 ---TDFNHIQLE---KEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIYANRHYLQLYKTR 372
D + K+I +P VY T ++ L++
Sbjct: 438 LINKDLVKNNVSFNAKDIQIP--------VYDTFDG------------SD---LRVLSGS 474
Query: 373 HPERLQCSSQCKTIGDVYIH--SSASVHPTAIV--GPNVSIDDGAVI-----GPGVRIKE 423
ER+ I + + ++ T I+ GP + G + G GVR
Sbjct: 475 ISERI-----VDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVR--- 526
Query: 424 SIILQGASIGNHSLVLNSIVGRNSKVGN 451
+I+ G L+ + G
Sbjct: 527 -VIVAGT--------LDI--NPDDDYGF 543
Score = 36.6 bits (84), Expect = 0.025
Identities = 81/494 (16%), Positives = 139/494 (28%), Gaps = 163/494 (32%)
Query: 78 IPTS-FPGLTQ---TFVSCGWTTNDTTPGPLKGTRFRPLSLD----SPKPL---FPVAGL 126
+PT+ F +Q F P P +G + D +P L F L
Sbjct: 22 VPTASFFIASQLQEQFNK-------ILPEPTEG-----FAADDEPTTPAELVGKF----L 65
Query: 127 PMIQHHIEACVQVPNLKEII--ILGYYPSA-----DLQKFVLDMVQEYKINIRYLQEFWD 179
+ +E +V +++ L + + D+ ++QE + +E
Sbjct: 66 GYVSSLVEP-SKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL-- 122
Query: 180 IIHQQICISLYWTWYRNTRSTYGIYRNS--LHWVQE------AV---------YFTLEIR 222
I Y T + + NS V E A+ YF E+R
Sbjct: 123 -------IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE-ELR 174
Query: 223 SDVVILMHSLYSMAI--LVTVMA------TEATRQQSVYYGCIVRKQQTSEISHYVEKPS 274
++ Y + + L+ A T + Q I ++E PS
Sbjct: 175 D-----LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT------QGLNILEWLENPS 223
Query: 275 TF--VSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIM 332
L++ + S + V Q +Y+V K F +L + +
Sbjct: 224 NTPDKDYLLSIPI---SC----PLIGVIQL-------AHYVVTAKLLGFTPGEL-RSYLK 268
Query: 333 PLAGSGK----AYVYQTSK-WWSQLKSAGSAIYANRHYLQLYKTRHPERLQCSSQCKTIG 387
G + A + W S S AI L + IG
Sbjct: 269 GATGHSQGLVTAVAIAETDSWESFFVSVRKAI----TVL-FF----------------IG 307
Query: 388 DVYIHSSASVHPTAIVGPNV---SIDDG--------AVIGPGVRIKESIILQGASIGNHS 436
+ +P + P++ S+++ ++ + + + N
Sbjct: 308 ---VRCY-EAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNK----TNSH 359
Query: 437 LVLNSIV------GRNSKVGNWSRVEGTPCD-PNPNKAFAKMDNPPLFN------SNGKL 483
L V G + V V G P N K P + S KL
Sbjct: 360 LPAGKQVEISLVNGAKNLV-----VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKL 414
Query: 484 NPSITILGDGVTVP 497
S L V P
Sbjct: 415 KFSNRFL--PVASP 426
>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase;
UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A
biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis}
PDB: 2iu9_A* 2iua_A*
Length = 374
Score = 60.8 bits (148), Expect = 4e-10
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRI-KESIILQGASIGNHSLVLNSIVGRNSKV 449
IH +A +HPTAI+ +V I+ AV+ + I G+ IG S VG +S +
Sbjct: 127 IHPTAVIHPTAIIEDHVCIEPYAVVCQHAHVGSACHIGSGSVIGA-----YSTVGEHSYI 181
Query: 450 GNWSRV 455
RV
Sbjct: 182 --HPRV 185
Score = 37.6 bits (88), Expect = 0.008
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 385 TIGD-VYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQ-GASIG 433
+G +I S + + + VG + I VI V I + +I+Q GA IG
Sbjct: 156 HVGSACHIGSGSVIGAYSTVGEHSYIHPRVVIRERVSIGKRVIIQPGAVIG 206
>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A
biosynthesis pathway, transferase; 1.30A {Pseudomonas
aeruginosa}
Length = 372
Score = 60.4 bits (147), Expect = 4e-10
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 8/66 (12%)
Query: 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRI-KESIILQGASIGNHSLVLNSIVGRNSKV 449
IH +A V A V P+ S+ AVI G RI I IG S++G +
Sbjct: 122 IHPTAIVAADAEVDPSASVGAYAVIESGARIGAGVSIGAHCVIGA-----RSVIGEGGWL 176
Query: 450 GNWSRV 455
RV
Sbjct: 177 --APRV 180
Score = 38.4 bits (90), Expect = 0.005
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 385 TIGD-VYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQ-GASIG 433
IG V I + + +++G + + V I + +Q GA IG
Sbjct: 151 RIGAGVSIGAHCVIGARSVIGEGGWLAPRVTLYHDVTIGARVSIQSGAVIG 201
>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD,
LEFT-handed parallel beta helix, acyl carrier protein,
antibiotic resistance; 2.60A {Escherichia coli}
Length = 341
Score = 59.9 bits (146), Expect = 5e-10
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRI-KESIILQGASIGNHSLVLNSIVGRNSKV 449
I SA + TA +G NVSI AVI GV + II G +G NS +G S++
Sbjct: 100 IAPSAVIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGK-----NSKIGAGSRL 154
Query: 450 GNWSRV 455
W+ V
Sbjct: 155 --WANV 158
Score = 37.6 bits (88), Expect = 0.007
Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 385 TIGD-VYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQ-GASIG 433
+GD V I + V + +G + I ++I ++ ++Q G +G
Sbjct: 129 ELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYHEIQIGQNCLIQSGTVVG 179
>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase
binding motif, pyrophosphorylase; HET: GTP; 2.80A
{Methanocaldococcus jannaschii}
Length = 196
Score = 58.2 bits (141), Expect = 5e-10
Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMV 164
KGTR + KPL + G +I + + ++ + I I + ++++
Sbjct: 10 KGTRMGGV----EKPLIKLCGRCLIDYVVSPLLK-SKVNNIFIATSPNTPKTKEYINSAY 64
Query: 165 QEYKINIRYLQE 176
++YK NI +
Sbjct: 65 KDYK-NIVVIDT 75
>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural
genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae}
Length = 255
Score = 56.6 bits (135), Expect = 4e-09
Identities = 19/188 (10%), Positives = 41/188 (21%), Gaps = 21/188 (11%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMV 164
+RF PK + G + +H + + + +
Sbjct: 9 MSSRFFKAGYTQPKYMLEAHGQTLFEHSVNSFAAYFASTPFLFIVRNVYDTAVFVREKAT 68
Query: 165 QEYKINIRYLQEFWDIIHQQICISLYWTWYRNTR---STYGIYRNSLHWVQEAVYFTLEI 221
Q + + Q ++L N + V+ +
Sbjct: 69 QLGIKQFYIAELHTETRGQAETVTLGLEELAKQGVDYQGSITVFNIDTFRPNFVFPDISQ 128
Query: 222 RSDVVILMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLV 281
SD + Q + + +S L
Sbjct: 129 HSDGYLE------------------VFQGGGDNWSFAKPEHAGSTKVIQTAEKNPISDLC 170
Query: 282 NCGVYLFS 289
+ G+Y F+
Sbjct: 171 STGLYHFN 178
>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape,
transferase, peptidoglycan synthesis, associative
mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A*
2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*
Length = 456
Score = 55.6 bits (135), Expect = 2e-08
Identities = 17/64 (26%), Positives = 29/64 (45%)
Query: 387 GDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRN 446
G + + I+ NV + D IG G +K +I I +S++ +SIVG
Sbjct: 264 GTLEHGKDVEIDVNVIIEGNVKLGDRVKIGTGCVLKNVVIGNDVEIKPYSVLEDSIVGEK 323
Query: 447 SKVG 450
+ +G
Sbjct: 324 AAIG 327
Score = 41.7 bits (99), Expect = 4e-04
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGY 150
KGTR S D PK L +AG PM++H I+ Q+ + +I G+
Sbjct: 15 KGTRMY--S-DLPKVLHTIAGKPMVKHVIDTAHQLGSENIHLIYGH 57
Score = 41.3 bits (98), Expect = 6e-04
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 385 TIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVLNSIV 443
+ +V I + + P + V + + + A IGP R++ + + +GN + S V
Sbjct: 297 VLKNVVIGNDVEIKPYS-VLEDSIVGEKAAIGPFSRLRPGAELAAETHVGNFVEIKKSTV 355
Query: 444 GRNSKVG 450
G+ SKV
Sbjct: 356 GKGSKVN 362
Score = 39.0 bits (92), Expect = 0.003
Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 397 VHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVE 456
+ T G +V ID +I V++ + IG ++ N ++G + ++ +S +E
Sbjct: 262 LRGTLEHGKDVEIDVNVIIEGNVKLGD-----RVKIGTGCVLKNVVIGNDVEIKPYSVLE 316
Query: 457 G 457
Sbjct: 317 D 317
>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics,
national institute allergy and infectious diseases; HET:
GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A
1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*
Length = 459
Score = 55.2 bits (134), Expect = 3e-08
Identities = 13/64 (20%), Positives = 30/64 (46%)
Query: 387 GDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRN 446
G++ ++ I+ +V + D IG G +K +I + I ++++ ++ + N
Sbjct: 267 GELTHGRDITIDTNVIIEGHVILGDRVRIGTGCVLKNCVIGDDSEISPYTVLEDARLDAN 326
Query: 447 SKVG 450
VG
Sbjct: 327 CTVG 330
Score = 41.7 bits (99), Expect = 4e-04
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGY 150
KGTR S D PK L P+AG PM+QH I+A +++ ++ G+
Sbjct: 18 KGTRMY--S-DLPKVLHPLAGKPMVQHVIDAAMKLGAQHVHLVYGH 60
Score = 40.2 bits (95), Expect = 0.001
Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 385 TIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVLNSIV 443
+ + I + + P V + +D +GP R++ + + +GA +GN + + +
Sbjct: 300 VLKNCVIGDDSEISPYT-VLEDARLDANCTVGPFARLRPGAELAEGAHVGNFVEIKKARL 358
Query: 444 GRNSKVG 450
G+ SK G
Sbjct: 359 GKGSKAG 365
Score = 38.6 bits (91), Expect = 0.004
Identities = 11/61 (18%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 397 VHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVE 456
+ G +++ID +I V + + IG ++ N ++G +S++ ++ +E
Sbjct: 265 LRGELTHGRDITIDTNVIIEGHVILGD-----RVRIGTGCVLKNCVIGDDSEISPYTVLE 319
Query: 457 G 457
Sbjct: 320 D 320
>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO;
1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB:
3fsb_A* 3fsc_A*
Length = 273
Score = 53.6 bits (129), Expect = 4e-08
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 390 YIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE-SIILQGASIGNHSLVLNSIVGRNSK 448
I SA + I+G NV+I+D I G I++ I +G+ IG SI+G
Sbjct: 4 NISKSAIIKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGA-----RSILGEYLV 58
Query: 449 VGNWSRV 455
R+
Sbjct: 59 DFYNDRI 65
Score = 48.6 bits (116), Expect = 2e-06
Identities = 20/102 (19%), Positives = 30/102 (29%), Gaps = 14/102 (13%)
Query: 394 SASVHPTAIVGPNVSIDDGAVIGPGVRIKE-SIILQGASIGNHSLVLNSIVGRNSKVGNW 452
++ +AI+ V I + I V I II I S +G S +G
Sbjct: 2 PNNISKSAIIKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKK-----GSFIGARSILGE- 55
Query: 453 SRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGV 494
N K + N + I GD +
Sbjct: 56 ------YLVDFYNDRINKKHPLIIGE-NALIRTENVIYGDTI 90
Score = 47.8 bits (114), Expect = 3e-06
Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 17/90 (18%)
Query: 385 TIG-DVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESI---------ILQGASIGN 434
IG +V I + + I+ NV I G+ IG + E + IG
Sbjct: 16 IIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFYNDRINKKHPLIIGE 75
Query: 435 HSLVLNS-------IVGRNSKVGNWSRVEG 457
++L+ I+G N + G+ +
Sbjct: 76 NALIRTENVIYGDTIIGDNFQTGHKVTIRE 105
Score = 40.5 bits (95), Expect = 7e-04
Identities = 21/132 (15%), Positives = 38/132 (28%), Gaps = 23/132 (17%)
Query: 385 TIGD-VYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRI-KESIILQGASIGNHSLVLNSI 442
IG+ I + ++ I+G N I +I I + I + +
Sbjct: 72 IIGENALIRTENVIYGDTIIGDNFQTGHKVTIRENTKIGNNVKIGTLSDIQH-----HVY 126
Query: 443 VGRNSKVGNWSRV-EGTPCDPN----PNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVP 497
+G + + V E + P+ PP G + +
Sbjct: 127 IGNYVNIHSNVFVGEKSIIKDFVWLFPHVVLTNDPTPPSNELLG------VTIELFAVIA 180
Query: 498 GELIVLNSIVLP 509
S+VLP
Sbjct: 181 A-----RSVVLP 187
Score = 28.6 bits (64), Expect = 5.0
Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 7/64 (10%)
Query: 379 CSSQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLV 438
D S+ + T + I +V+ PG+ I E A +G ++V
Sbjct: 151 LFPHVVLTNDPTPPSNELLGVT--IELFAVIAARSVVLPGIHINE-----DALVGAGAVV 203
Query: 439 LNSI 442
+
Sbjct: 204 TKDV 207
>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe;
acetyltransferase, bifunctional, drug design; HET: ACO
UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4
c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A*
1g95_A*
Length = 468
Score = 54.0 bits (131), Expect = 5e-08
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Query: 387 GDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRN 446
DV I + I+ I V+ G + +S I GA I +S++ S V
Sbjct: 273 IDVEIAPEVQIEANVILKGQTKIGAETVLTNGTYVVDSTIGAGAVI-TNSMIEESSVADG 331
Query: 447 SKVGNWSR 454
VG ++
Sbjct: 332 VTVGPYAH 339
Score = 42.1 bits (100), Expect = 3e-04
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGY 150
KGTR + S D PK L VAG+ M++H + + K + ++G+
Sbjct: 21 KGTRMK--S-DLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGH 63
Score = 40.6 bits (96), Expect = 0.001
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 385 TIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVLNSIV 443
+ D I + A + + I S+ DG +GP I+ S + IGN V S +
Sbjct: 306 YVVDSTIGAGAVITNSMIEE--SSVADGVTVGPYAHIRPNSSLGAQVHIGNFVEVKGSSI 363
Query: 444 GRNSKVG 450
G N+K G
Sbjct: 364 GENTKAG 370
>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix,
acetyl transferase, transferase; HET: ACO U5P UDP PE4;
1.43A {Bordetella petrii} PDB: 3mqh_A*
Length = 192
Score = 51.5 bits (123), Expect = 9e-08
Identities = 26/127 (20%), Positives = 40/127 (31%), Gaps = 12/127 (9%)
Query: 388 DVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRI-KESIILQGASIGNHSLVLNSIVGRN 446
IH +A V A +G + I I G I + + Q +GN +G
Sbjct: 3 MATIHPTAIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGN-----RVRIGNR 57
Query: 447 SKVGN----WSRVE-GTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELI 501
K+ N + V P+ F P K TI+ G T+
Sbjct: 58 VKIQNNVSVYDNVFLEDDVFCGPSMVFTN-VYNPRAAIERKSEYRDTIVRQGATLGANCT 116
Query: 502 VLNSIVL 508
V+ +
Sbjct: 117 VVCGATI 123
>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase;
UDP-N-acetylglucosamine acyltransferase, LPXA,
LEFT-handed B structure; HET: SOG TLA; 2.10A
{Helicobacter pylori} SCOP: b.81.1.1
Length = 270
Score = 52.3 bits (126), Expect = 1e-07
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVL-NSIVGRNSKV 449
I +A + P A + V I + VIG GV++ E G + N+ + ++ VG+N+++
Sbjct: 4 IAKTAIISPKAEINKGVEIGEFCVIGDGVKLDE-----GVKLHNNVTLQGHTFVGKNTEI 58
>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine
O-acyltransferase; L.interrogans LPXA, LPXA, LPXA
acyltransferase; 2.10A {Leptospira interrogans} PDB:
3i3a_A* 3i3x_A*
Length = 259
Score = 51.8 bits (125), Expect = 1e-07
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 389 VYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVL-NSIVGRNS 447
+ IH +A + P A + +V + ++I V I+E G I H + S +G+ +
Sbjct: 1 MKIHPTAIIDPKAELHESVEVGPYSIIEGNVSIQE-----GTIIEGHVKICAGSEIGKFN 55
Query: 448 KV 449
+
Sbjct: 56 RF 57
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase,
rossmann fold, LEFT-handed-beta-helix, cell shape; HET:
COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB:
3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*
Length = 501
Score = 52.6 bits (127), Expect = 2e-07
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 387 GDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRN 446
DV I +HP + I V+GP + + + GAS+ + +S +G
Sbjct: 282 VDVTIGRDTVIHPGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASV-VRTHGSSSSIGDG 340
Query: 447 SKVGNWSR 454
+ VG ++
Sbjct: 341 AAVGPFTY 348
Score = 41.8 bits (99), Expect = 4e-04
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 15/88 (17%)
Query: 99 TTPGPL--------KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGY 150
T PG GTR R S D+PK L +AG M+ H + A ++ + I++LG+
Sbjct: 8 TFPGDTAVLVLAAGPGTRMR--S-DTPKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLGH 64
Query: 151 YPSADL-QKFVLDMVQEYKINIRY-LQE 176
V ++ I LQ+
Sbjct: 65 --DHQRIAPLVGELADTLGRTIDVALQD 90
Score = 41.0 bits (97), Expect = 8e-04
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 385 TIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK-ESIILQGASIGNHSLVLNSIV 443
T+ DV + ASV T SI DGA +GP ++ + + +G V NS +
Sbjct: 315 TLTDVAVGDGASVVRTHGSS--SSIGDGAAVGPFTYLRPGTALGADGKLGAFVEVKNSTI 372
Query: 444 GRNSKVG 450
G +KV
Sbjct: 373 GTGTKVP 379
>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein,
N-glycan biosynthesis, bacillosamine, structural
genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni}
SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A*
2npo_A
Length = 194
Score = 50.4 bits (121), Expect = 2e-07
Identities = 15/85 (17%), Positives = 33/85 (38%), Gaps = 11/85 (12%)
Query: 385 TIGD-VYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE-------SIILQGASIGNHS 436
I V +++S+ + ++G + GA V+I + S +L S+ + S
Sbjct: 109 KIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLADDS 168
Query: 437 LV-LNSIVGRNSKVGNWSRVEGTPC 460
++ + + +N G P
Sbjct: 169 ILGGGATLVKN--QDEKGVFVGVPA 191
Score = 46.9 bits (112), Expect = 3e-06
Identities = 19/106 (17%), Positives = 44/106 (41%), Gaps = 19/106 (17%)
Query: 397 VHPTAIVGPNVSIDD--GAVIGPGVRIKESIILQGASIGNHSLV-LNSIVGRNSKVGNWS 453
+H +A++ P+ +++ G +I P V +I A I ++ +S++ +G +S
Sbjct: 78 IHKSALISPSAIVEENAGILIMPYV-----VINAKAKIEKGVILNTSSVIEHECVIGEFS 132
Query: 454 RVEGTPCDPNPNKAFA---KMDNPPLFNSNGKLNPSITILGDGVTV 496
V + A K+ N + P++++ D +
Sbjct: 133 HV-------SVGAKCAGNVKIGKNCFLGINSCVLPNLSL-ADDSIL 170
Score = 39.2 bits (92), Expect = 0.001
Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 8/75 (10%)
Query: 389 VYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE-------SIILQGASIGNHSLV-LN 440
+ I ++ A + V ++ +VI I E + IG + + +N
Sbjct: 96 ILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGIN 155
Query: 441 SIVGRNSKVGNWSRV 455
S V N + + S +
Sbjct: 156 SCVLPNLSLADDSIL 170
Score = 33.0 bits (76), Expect = 0.13
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 379 CSSQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESI 425
S K G+V I + + + V PN+S+ D +++G G + ++
Sbjct: 134 VSVGAKCAGNVKIGKNCFLGINSCVLPNLSLADDSILGGGATLVKNQ 180
>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase;
structural genomics; 2.30A {Campylobacter jejuni subsp}
Length = 266
Score = 51.1 bits (123), Expect = 2e-07
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVL-NSIVGRNSKV 449
IH SA + A +G +V I+ A + +I I + +L ++ +G +S+V
Sbjct: 7 IHPSAVIEEGAQLGDDVVIEAYAYVSKDAKIGN-----NVVIKQGARILSDTTIGDHSRV 61
>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A,
GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter
vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*
Length = 220
Score = 50.4 bits (121), Expect = 3e-07
Identities = 15/90 (16%), Positives = 34/90 (37%), Gaps = 10/90 (11%)
Query: 379 CSSQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKE-------SIILQGAS 431
++ I++ A V +G + + + GV + E + ++ G +
Sbjct: 126 INADSWIGDLAIINTGAVVDHDCRLGAACHLGPASALAGGVSVGERAFLGVGARVIPGVT 185
Query: 432 IGNHSLV-LNSIVGRNSKVGNWSRVEGTPC 460
IG ++V +V R+ + + G P
Sbjct: 186 IGADTIVGAGGVVVRD--LPDSVLAIGVPA 213
Score = 44.6 bits (106), Expect = 3e-05
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 8/70 (11%)
Query: 390 YIHSSASVHPTAIVGPNVSIDDGAVIGPGVRI-KESIILQGASIGNHSLV-------LNS 441
IH SA V P+ +G V++ G I I +II GA + + + S
Sbjct: 101 AIHPSAVVSPSVRLGEGVAVMAGVAINADSWIGDLAIINTGAVVDHDCRLGAACHLGPAS 160
Query: 442 IVGRNSKVGN 451
+ VG
Sbjct: 161 ALAGGVSVGE 170
>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase;
ssgcid, beta helix, structural genomics, seattle
structural center for infectious disease, transferase;
1.80A {Burkholderia thailandensis}
Length = 283
Score = 50.7 bits (122), Expect = 4e-07
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVL-NSIVGRNSKV 449
IH +A + P A + V + A++G V I +IG+HS++ ++ +G ++++
Sbjct: 25 IHPTAIIEPGAQLHETVEVGPYAIVGSNVTIGA-----RTTIGSHSVIEGHTTIGEDNRI 79
>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein;
LEFT-handed parallel beta helix, lipid A biosynthesis,
lipid synthesis; 2.10A {Arabidopsis thaliana}
Length = 305
Score = 50.5 bits (121), Expect = 6e-07
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVL-NSIVGRNSKV 449
IH SA VHP A++G VS+ IG V++ G + S V N+ +G + +
Sbjct: 10 IHPSAVVHPNAVIGKGVSVGPYCTIGSSVKLGN-----GCKLYPSSHVFGNTELGESCVL 64
Query: 450 GNWSRVEGTPCDP 462
+ V
Sbjct: 65 MTGAVVGDELPGY 77
>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta
helix; HET: U20; 1.74A {Escherichia coli K12} SCOP:
b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A
Length = 262
Score = 49.9 bits (120), Expect = 6e-07
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVL-NSIVGRNSKV 449
+H +A V A +G N I ++GP V I E G + +H +V ++ +GR++++
Sbjct: 8 VHPTAIVEEGASIGANAHIGPFCIVGPHVEIGE-----GTVLKSHVVVNGHTKIGRDNEI 62
>1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase,
structural genomics, riken S genomics/proteomics
initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii}
SCOP: b.81.1.5 PDB: 1v67_A 2fko_A
Length = 173
Score = 46.4 bits (111), Expect = 4e-06
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 26/91 (28%)
Query: 386 IGDVYIHSSASVHPTAI---------VGPNVSIDDGAV----------IGPGVRIKESII 426
IGDV + SV P+A+ VG ++ D IG V I + +
Sbjct: 26 IGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAM 85
Query: 427 LQGASIGNHSL------VLN-SIVGRNSKVG 450
+ GA +GN+ + +L+ + +G + +G
Sbjct: 86 VHGAKVGNYVIIGISSVILDGAKIGDHVIIG 116
>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center
for structural genomics, JCSG, protein structure INI
PSI-2; 2.28A {Desulfovibrio desulfuricans subsp}
Length = 496
Score = 48.1 bits (114), Expect = 4e-06
Identities = 11/63 (17%), Positives = 27/63 (42%)
Query: 388 DVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNS 447
S ASV A++ + I + ++ + + + +G++ + ++NS + RN
Sbjct: 273 GAGSASGASVSGYAVIKGDTVIGENVLVSQRAYLDNAWMGKGSNAQENCYIINSRLERNC 332
Query: 448 KVG 450
Sbjct: 333 VTA 335
Score = 43.8 bits (103), Expect = 1e-04
Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 5/63 (7%)
Query: 388 DVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNS 447
+ +S + A S+ AVI I E + + + N+ +G+ S
Sbjct: 261 FEEVFASGHMASGAGSASGASVSGYAVIKGDTVIGE-----NVLVSQRAYLDNAWMGKGS 315
Query: 448 KVG 450
Sbjct: 316 NAQ 318
>1xhd_A Putative acetyltransferase/acyltransferase; structural genomics,
protein structure initiative, medwest C structural
genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5
PDB: 3vnp_A 2eg0_A
Length = 173
Score = 44.9 bits (107), Expect = 1e-05
Identities = 21/105 (20%), Positives = 39/105 (37%), Gaps = 27/105 (25%)
Query: 386 IGDVYIHSSASVHPTAI---------VGPNVSIDDGAV----------IGPGVRIKESII 426
GDVY+ +S+ + +G V++ D + V + +I
Sbjct: 28 TGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVI 87
Query: 427 LQGASIGNHSL------VLN-SIVGRNSKVGNWSRV-EGTPCDPN 463
L I +L +L+ + +G + +G S V +G PN
Sbjct: 88 LHSCHIKKDALIGMGSIILDGAEIGEGAFIGAGSLVSQGKKIPPN 132
>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar,
LEFT-handed beta helix, sugar N-AC transferase; HET: COA
0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A*
3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A*
Length = 205
Score = 44.7 bits (106), Expect = 2e-05
Identities = 33/160 (20%), Positives = 59/160 (36%), Gaps = 26/160 (16%)
Query: 362 NRHYLQLYKTR------HPERLQCSSQCKTIG-DVYIHSSASVHPTAIV--GPNVSIDDG 412
+ H+ LY E L ++G +V I AS++ ++ G NV IDD
Sbjct: 6 HHHHENLYFQGHMNSFYSQEEL-KKIGFLSVGKNVLISKKASIYNPGVISIGNNVRIDDF 64
Query: 413 AVIGPGVRI-KESIILQGASI--GNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPNKAFA 469
++ V I S I ++ G + + + + + + V D + N
Sbjct: 65 CILSGKVTIGSYSHIAAYTALYGGEVGIEM----YDFANISSRTIVYAAIDDFSGN---- 116
Query: 470 KMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLP 509
+ P + N + IL V + G +SI+ P
Sbjct: 117 ALMGPTIPNQYKNVKTGKVILKKHVII-GA----HSIIFP 151
Score = 33.1 bits (76), Expect = 0.12
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 12/59 (20%)
Query: 402 IVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPC 460
I+ +V I ++I P V I E G ++G S+V + +W G P
Sbjct: 136 ILKKHVIIGAHSIIFPNVVIGE-----GVAVGAMSMV-------KESLDDWYIYVGVPV 182
Score = 28.1 bits (63), Expect = 5.3
Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 354 SAGSAIYANRHYLQLYKTRHPERLQCSSQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGA 413
S+ + +YA P + + G V + + +I+ PNV I +G
Sbjct: 101 SSRTIVYAAIDDFSGNALMGPT-IPNQYKNVKTGKVILKKHVIIGAHSIIFPNVVIGEGV 159
Query: 414 VIGPG 418
+G
Sbjct: 160 AVGAM 164
>3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta
helix, gamma carbonic anhydrase, disulfide dependent
activity; 1.10A {Thermosynechococcus elongatus} PDB:
3kwe_A 3kwc_A
Length = 213
Score = 44.8 bits (106), Expect = 2e-05
Identities = 25/115 (21%), Positives = 34/115 (29%), Gaps = 37/115 (32%)
Query: 386 IGDVYIHSSASVHPTAI----------VGPNVSIDDGAV--------------------I 415
IGDV I + P +G +I DG V I
Sbjct: 55 IGDVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVIHGLQQGRVIGDDGQEYSVWI 114
Query: 416 GPGVRIKESIILQG-ASIGNHSL------VLNSIVGRNSKVGNWSRVEGTPCDPN 463
G V I ++ G A IG+ V N+ VG V ++ P
Sbjct: 115 GDNVSITHMALIHGPAYIGDGCFIGFRSTVFNARVGAGCVVMMHVLIQDVEIPPG 169
>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose
pyrophosphorylase, allostery, kinetics,
structure-function relationships; 2.10A {Agrobacterium
tumefaciens}
Length = 420
Score = 45.7 bits (109), Expect = 3e-05
Identities = 74/420 (17%), Positives = 139/420 (33%), Gaps = 129/420 (30%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGL-PMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDM 163
+G+R + L+ KP G +I + + ++ I + Y + L + +
Sbjct: 22 RGSRLKELTDRRAKPAVYFGGKARIIDFALSNALN-SGIRRIGVATQYKAHSLIRHL--- 77
Query: 164 VQEYKINIRYLQEFWDII--HQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYFTLEI 221
+ + E +DI+ Q++ + WY T +Y+N +
Sbjct: 78 QRGWDFFRPERNESFDILPASQRVSET---QWYEGTAD--AVYQN--------IDIIEPY 124
Query: 222 RSD-VVILM--HSLYSM---AIL---------VTVMATEATRQQSVYYGCIVRKQQTSEI 266
+ +VIL H +Y M +L VT+ E R ++ +G ++ + EI
Sbjct: 125 APEYMVILAGDH-IYKMDYEYMLQQHVDSGADVTIGCLEVPRMEATGFG-VMHVNEKDEI 182
Query: 267 SHYVEKPSTFVST-------LVNCGVYLFS----LDIFQNIAAVFQSKQDEFYNGNYMVN 315
++EKP+ L + G+Y+F ++ + AA S +D F
Sbjct: 183 IDFIEKPADPPGIPGNEGFALASMGIYVFHTKFLMEAVRRDAADPTSSRD-F-------- 233
Query: 316 GKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAIY------------AN- 362
GKD II + GKA ++ + + Y AN
Sbjct: 234 GKD-----------IIPYIVEHGKAVAHRFADSCVRSDFEHEP-YWRDVGTIDAYWQANI 281
Query: 363 -----RHYLQLYKTRHPERLQCSSQCKTIGDVYIHSSASVHPTA---------------- 401
L +Y P I + A + P A
Sbjct: 282 DLTDVVPDLDIYDKSWP----------------IWTYAEITPPAKFVHDDEDRRGSAVSS 325
Query: 402 IVGPNVSIDDGAV----IGPGVRI------KESIILQGASIGNHSLVLNSIVGRNSKVGN 451
+V + I A+ + GVR + +++L IG H+ + N ++ +
Sbjct: 326 VVSGDCIISGAALNRSLLFTGVRANSYSRLENAVVLPSVKIGRHAQLSNVVIDHGVVIPE 385
Score = 31.8 bits (73), Expect = 0.51
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 10/44 (22%)
Query: 388 DVYIHSSASVH-----PTAIVGPNVS-----IDDGAVIGPGVRI 421
V +S + + P+ +G + ID G VI G+ +
Sbjct: 346 GVRANSYSRLENAVVLPSVKIGRHAQLSNVVIDHGVVIPEGLIV 389
Score = 28.7 bits (65), Expect = 5.5
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 387 GDVYIHSSASVHPTAIVGPNVSIDDGAVIG 416
V I A + ++ V I +G ++G
Sbjct: 362 PSVKIGRHAQLS-NVVIDHGVVIPEGLIVG 390
>3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle
structural genomics center for infect disease,
GRAM-negative bacteria; 1.61A {Anaplasma
phagocytophilum}
Length = 191
Score = 43.4 bits (103), Expect = 4e-05
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 27/92 (29%)
Query: 386 IGDVYIHSSASVHPTAI---------VGPNVSIDDGAV-----------IGPGVRIKESI 425
IGDV I +AS+ + VG +I D V IG V I S
Sbjct: 49 IGDVCIGKNASIWYGTVLRGDVDKIEVGEGTNIQDNTVVHTDSMHGDTVIGKFVTIGHSC 108
Query: 426 ILQGASIGNHSL------VLN-SIVGRNSKVG 450
IL ++GN++ V++ +++ S +
Sbjct: 109 ILHACTLGNNAFVGMGSIVMDRAVMEEGSMLA 140
>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase;
structural genomics, csgid; 1.70A {Bacillus anthracis}
PDB: 3cj8_A*
Length = 240
Score = 43.3 bits (102), Expect = 8e-05
Identities = 29/114 (25%), Positives = 43/114 (37%), Gaps = 26/114 (22%)
Query: 397 VHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLV-LNSIVGRNSKVGNWSRV 455
+ P AI+ +V I D AVI I GA IG S++ +N+++G + VG
Sbjct: 94 IEPGAIIRDHVEIGDNAVIMMNATINI-----GAVIGEGSMIDMNAVLGGRATVGK---- 144
Query: 456 EGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLP 509
C A + PP I+ D V + N +VL
Sbjct: 145 ---NCHVGAGAVLAGVIEPPSAKP--------VIVEDDVVIGA-----NVVVLE 182
Score = 37.1 bits (86), Expect = 0.008
Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 23/89 (25%)
Query: 385 TIGD-VYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRI---------------------K 422
IGD I +A+++ A++G ID AV+G + K
Sbjct: 105 EIGDNAVIMMNATINIGAVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLAGVIEPPSAK 164
Query: 423 ESIILQGASIGNHSLVL-NSIVGRNSKVG 450
I+ IG + +VL VG+ + V
Sbjct: 165 PVIVEDDVVIGANVVVLEGVTVGKGAVVA 193
Score = 32.1 bits (73), Expect = 0.34
Identities = 22/122 (18%), Positives = 48/122 (39%), Gaps = 10/122 (8%)
Query: 323 HIQLEKEIIMPLAGSGKAYVYQTSKW-WSQLKSAGSAIYANRHYLQLYKTRHPERLQCSS 381
+I+ + + + + +A+V + S + + + + N Y+ Y + R
Sbjct: 25 YIKGDLKEV-TFPETVQAFVNKKSGVLFGEWSEIKTILDENSKYIVDYVVENDRRNSAIP 83
Query: 382 QCKTIGD-VYIHSSASVHPTA------IVGPNVSIDDGAVIGPGVRIKE-SIILQGASIG 433
G I A + ++ N +I+ GAVIG G I +++ A++G
Sbjct: 84 MLDLKGIKARIEPGAIIRDHVEIGDNAVIMMNATINIGAVIGEGSMIDMNAVLGGRATVG 143
Query: 434 NH 435
+
Sbjct: 144 KN 145
>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
2; structural genomics, PSI-2, protein structure
initiative; 2.30A {Listeria monocytogenes str}
Length = 246
Score = 43.0 bits (102), Expect = 9e-05
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMV 164
KGTR ++ PK P+ G P+I H +E + +I+I + D +
Sbjct: 13 KGTRMG--NVSMPKQFLPLNGKPIIVHTVEKFILNTRFDKILISS---PKEWMNHAEDNI 67
Query: 165 QEYKINIRY 173
++Y + R
Sbjct: 68 KKYISDDRI 76
>3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified}
Length = 189
Score = 41.1 bits (97), Expect = 2e-04
Identities = 26/98 (26%), Positives = 37/98 (37%), Gaps = 33/98 (33%)
Query: 386 IGDVYIHSSASVHPTAI---------VGPNVSIDDGAV-----------------IGPGV 419
IGDV + SV P A+ +G S+ DG+V IG V
Sbjct: 35 IGDVELGDDCSVWPLAVIRGDMHHIRIGARTSVQDGSVLHITHASDYNPGGYPLIIGDDV 94
Query: 420 RIKESIILQGASIGNHSL------VLN-SIVGRNSKVG 450
I +L G +IGN L +++ +IV V
Sbjct: 95 TIGHQAMLHGCTIGNRVLIGMKSMIMDGAIVEDEVIVA 132
>3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center
for structural genomics O infectious diseases, all beta
protein; 1.20A {Salmonella enterica subsp}
Length = 187
Score = 41.1 bits (97), Expect = 3e-04
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 27/97 (27%)
Query: 386 IGDVYIHSSASVHPTAI---------VGPNVSIDDGAV-----------------IGPGV 419
IGDV + + P + +G +I DG+V IG V
Sbjct: 31 IGDVRLADDVGIWPLVVIRGDVNYVAIGARTNIQDGSVLHVTHKSSSNPHGNPLIIGEDV 90
Query: 420 RIKESIILQGASIGNHSLV-LNSIVGRNSKVGNWSRV 455
+ ++L G +IGN LV + SIV + + + +
Sbjct: 91 TVGHKVMLHGCTIGNRVLVGMGSIVLDGAIIEDDVMI 127
>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics,
NPPSFA, national project O structural and functional
analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19
Length = 232
Score = 41.0 bits (96), Expect = 4e-04
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIII 147
K K L P G PM++ +EA L + +
Sbjct: 12 KEAWAERFG-VGSKALVPYRGRPMVEWVLEALYAA-GLSPVYV 52
>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic;
transferase, non-mevalonate-pathway, herbicide,
allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana}
PDB: 2yc5_A* 1w77_A* 2ycm_A*
Length = 228
Score = 40.2 bits (95), Expect = 6e-04
Identities = 11/69 (15%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMV 164
+G R + PK P+ G P+ + ++P +KEI+++ + +
Sbjct: 14 QGKRMKM---SMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVC---DPFFRDIFEEYE 67
Query: 165 QEYKINIRY 173
+ +++ +
Sbjct: 68 ESIDVDLSF 76
>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase;
nucleotidyltransferase, CMP-KDO synthetase, nucleoside
monophosphate glycosides; 1.83A {Escherichia coli} SCOP:
c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A*
1h7h_A* 1h7t_A*
Length = 245
Score = 40.2 bits (95), Expect = 8e-04
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 8/42 (19%)
Query: 107 TRFRPLSLDSP-KPLFPVAGLPMIQHHIEACVQVPNLKEIII 147
+R P KPL + G PMIQH E +QV + E+ +
Sbjct: 14 SRL-------PGKPLLDIVGKPMIQHVYERALQVAGVAEVWV 48
>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase;
nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A
{Streptococcus pneumoniae} PDB: 2vsi_A*
Length = 236
Score = 39.9 bits (94), Expect = 0.001
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMV 164
GTR + PK + P++ H IE V P++++I++ D D+V
Sbjct: 12 TGTRMGIS--NLPKQFLELGDRPILIHTIEKFVLEPSIEKIVVGV---HGDWVSHAEDLV 66
Query: 165 QEYKINIR 172
+Y +
Sbjct: 67 DKYLPLYK 74
>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium
tuberculosis H37RV} PDB: 2we9_A 2yes_A
Length = 197
Score = 38.8 bits (91), Expect = 0.001
Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 10/73 (13%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMV 164
+ R +PK L P ++ ++ Q + I+ LG SA V +
Sbjct: 15 RSNRLG-----TPKQLLPYRDTTVLGATLDVARQAGFDQLILTLGGAASA-----VRAAM 64
Query: 165 QEYKINIRYLQEF 177
++ +++
Sbjct: 65 ALDGTDVVVVEDV 77
>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase;
cytidylyltransferase, deoxyxylulose-5-phosphate pathway
(DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A
{Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A
1vgt_A 1vgu_A 3n9w_A 1h3m_A
Length = 236
Score = 38.7 bits (91), Expect = 0.002
Identities = 9/43 (20%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIII 147
G R + + PK + +++H + A + P +K ++I
Sbjct: 17 FGRRMQT---ECPKQYLSIGNQTILEHSVHALLAHPRVKRVVI 56
>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural
genomics, niaid, national institute of allergy AN
infectious diseases; 1.90A {Acinetobacter baumannii}
PDB: 3pol_A
Length = 253
Score = 38.6 bits (91), Expect = 0.003
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 8/42 (19%)
Query: 107 TRFRPLSLDSP-KPLFPVAGLPMIQHHIEACVQVPNLKEIII 147
+R P KPL + PMI ++ +V ++ +
Sbjct: 13 SRL-------PGKPLLLIHDRPMILRVVDQAKKVEGFDDLCV 47
>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium; 2.80A {Sulfolobus solfataricus}
Length = 197
Score = 38.1 bits (89), Expect = 0.003
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 8/54 (14%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQK 158
+G RF K L + P+I I + +III+G Y + L
Sbjct: 12 EGKRF-----GGDKLLAKIDNTPIIMRTIRIYGDLE---KIIIVGKYVNEMLPL 57
>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids,
nonmevalonate, transferase; HET: C GPP; 2.3A
{Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB:
1w57_A*
Length = 371
Score = 38.8 bits (91), Expect = 0.003
Identities = 7/43 (16%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIII 147
TRF + K + P+ + + K+I++
Sbjct: 13 NSTRF---NTKVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVV 52
>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A
{Mycobacterium SP}
Length = 199
Score = 37.7 bits (88), Expect = 0.004
Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 10/73 (13%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMV 164
R +PK L P+ ++ + + P + I+ LG VL+ V
Sbjct: 15 YSRRLG-----TPKQLLPLGDTTLLGATLAMARRCPFDQLIVTLGGAADE-----VLEKV 64
Query: 165 QEYKINIRYLQEF 177
+ ++I + +
Sbjct: 65 ELDGLDIVLVDDA 77
>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase,
mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella
enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A*
Length = 259
Score = 38.2 bits (89), Expect = 0.004
Identities = 37/267 (13%), Positives = 85/267 (31%), Gaps = 68/267 (25%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVL--- 161
GTR ++ PKP+ + G P++ H I+ Y ++ F++
Sbjct: 12 LGTRLSEETIVKPKPMVEIGGKPILWH---------------IMKMYSVHGIKDFIICCG 56
Query: 162 ---DMVQEY-----------KINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNS 207
+++EY ++ + + ++ + + R
Sbjct: 57 YKGYVIKEYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKR-V 115
Query: 208 LHWVQE-----AVYFTLEIRSDVVILMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQ 262
+V++ Y D+ + + T+ AT +G + Q
Sbjct: 116 AEYVKDDEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTAT----FPPGRFGAL--DIQ 169
Query: 263 TSEISHYVEKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFN 322
++ + EKP ++N G ++ + + + + N T
Sbjct: 170 AGQVRSFQEKPKGD-GAMINGGFFVLNPSVI-----------------DLIDNDATT--- 208
Query: 323 HIQLEKEIIMPLAGSGKAYVYQTSKWW 349
E+E +M LA G+ ++ +W
Sbjct: 209 ---WEQEPLMTLAQQGELMAFEHPGFW 232
>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural
genomics consortium, TBSGC, rossman fold; HET: CDM;
2.00A {Mycobacterium tuberculosis} PDB: 3q7u_A* 3okr_A
2xwn_A*
Length = 231
Score = 37.9 bits (89), Expect = 0.005
Identities = 6/43 (13%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIII 147
G R PK + + G +I+ ++ + + +++
Sbjct: 17 SGERLAV---GVPKAFYQLDGQTLIERAVDGLLDSGVVDTVVV 56
>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP
pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB:
2xwm_A*
Length = 223
Score = 37.5 bits (88), Expect = 0.005
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIII 147
G R R PK + G P+++H + + I+I
Sbjct: 12 SGERLRA---GRPKAFVTLGGTPLLEHALSGLRASGVIDRIVI 51
>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG,
joint center for structural GENO PSI, protein structure
initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP:
c.68.1.13
Length = 234
Score = 37.5 bits (88), Expect = 0.005
Identities = 7/43 (16%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIII 147
KG R + PK + G + ++ + ++ + ++I
Sbjct: 23 KGERMS---ENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVI 62
>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural
genomics, transferase; 2.35A {Neisseria gonorrhoeae}
SCOP: c.68.1.13 PDB: 1vgz_A
Length = 231
Score = 37.1 bits (87), Expect = 0.008
Identities = 7/43 (16%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIII 147
G RF D PK + +++H + + + ++
Sbjct: 16 IGVRFGA---DKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVV 55
>1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina
thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A
1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A
Length = 247
Score = 36.8 bits (85), Expect = 0.011
Identities = 25/119 (21%), Positives = 37/119 (31%), Gaps = 46/119 (38%)
Query: 386 IGDVYIHSSASVHPTAI----------VGPNVSIDDGAV--------------------- 414
IG+V I ++ V P A VG ++ DG V
Sbjct: 75 IGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEV 134
Query: 415 --------IGPGVRIKESIILQG-ASIGNHSL------VLNSIVGRNSKVGNWSRVEGT 458
IG V + + G A++G+ + V S VG N + S G
Sbjct: 135 DGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFKSKVGNNCVLEPRSAAIGV 193
Score = 32.9 bits (75), Expect = 0.17
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 9/50 (18%)
Query: 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRIK----ESIILQGASIGNHS 436
I +A + P A V V+I ++ P I+ I +G+ S
Sbjct: 62 IDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPI-----FVGDRS 106
Score = 29.4 bits (66), Expect = 2.4
Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 13/66 (19%)
Query: 385 TIG-DVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIV 443
IG +V + + VH A VG D IG + + + +GN+ ++
Sbjct: 142 YIGNNVSLAHQSQVHGPAAVG------DDTFIGMQ-----AFVFKSK-VGNNCVLEPRSA 189
Query: 444 GRNSKV 449
+
Sbjct: 190 AIGVTI 195
>3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine
O-acetyltransferase...; ssgcid, structural genomics;
1.95A {Brucella melitensis biovar abortus}
Length = 287
Score = 36.6 bits (85), Expect = 0.016
Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 24/94 (25%)
Query: 400 TAIVGPNVS--------------------IDDGAVIGPGVRIKESI-ILQGASIGNHSLV 438
TA+V NVS I G +IG G +I +I + Q + I S+V
Sbjct: 190 TAVVEDNVSILHGVTLGGTGKSSGDRHPKIRQGVLIGAGAKILGNIQVGQCSKIAAGSVV 249
Query: 439 LNSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMD 472
L S+ + G +R+ G P++ MD
Sbjct: 250 LKSVPHNVTVAGVPARIIGETGCTEPSRV---MD 280
>1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix;
1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB:
1sst_A* 1s80_A 1ssm_A 3gvd_A*
Length = 267
Score = 36.1 bits (84), Expect = 0.018
Identities = 36/158 (22%), Positives = 60/158 (37%), Gaps = 42/158 (26%)
Query: 358 AIYANR--HYLQLYKTRHPERLQCSSQCKTIGDVYIHSSASV-------HP-------TA 401
AI + R HYL + +Q DV IH +A + H T+
Sbjct: 106 AIQSYRITHYLWNQNRKSLALY-LQNQISVAFDVDIHPAAKIGHGIMFDHATGIVVGETS 164
Query: 402 IVGPNVSI--------------------DDGAVIGPGVRIKESI-ILQGASIGNHSLVLN 440
++ +VSI +G +IG G +I +I + + A IG +S+VLN
Sbjct: 165 VIENDVSILQGVTLGGTGKESGDRHPKVREGVMIGAGAKILGNIEVGKYAKIGANSVVLN 224
Query: 441 SIVGRNSKVGNWSRVEGTPCDPNP----NKAFAKMDNP 474
+ + G +R+ P N+ F +D+
Sbjct: 225 PVPEYATAAGVPARIVSQDKAAKPAFDMNQYFIGIDDG 262
>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose
synthase, ADP-glucose pyrophosphorylase, agpase B; HET:
PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6
PDB: 1yp3_A* 1yp4_A*
Length = 451
Score = 36.5 bits (85), Expect = 0.022
Identities = 17/115 (14%), Positives = 38/115 (33%), Gaps = 35/115 (30%)
Query: 402 IVGPNVSIDDGAVIGPGVRIKESIILQGAS-------------------IGNHSLVLNSI 442
+VG I G I++S+++ IG + + +I
Sbjct: 348 VVGLRS------CISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAI 401
Query: 443 VGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVP 497
+ +N+++G+ ++ D A + F +G I + +P
Sbjct: 402 IDKNARIGDNVKIINK--DNVQE---AARETDGYFIKSG-----IVTVIKDALIP 446
Score = 28.4 bits (64), Expect = 6.4
Identities = 11/57 (19%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 391 IHSSASVHPTA-IVGPNVS---IDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIV 443
I++ P + ++ +V+ I +G VI +I S++ + I +++ +S++
Sbjct: 311 IYTQPRYLPPSKMLDADVTDSVIGEGCVIK-NCKIHHSVVGLRSCISEGAIIEDSLL 366
Score = 28.4 bits (64), Expect = 7.5
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 385 TIGDVYIHSSASVHPTAIVGPNVSIDDGAV-IGPGVRIKESIILQGASIGNHSLVLN 440
I D + + A + + IG IK +II + A IG++ ++N
Sbjct: 360 IIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIIN 416
>1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of
trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6
Length = 289
Score = 35.4 bits (82), Expect = 0.030
Identities = 37/152 (24%), Positives = 57/152 (37%), Gaps = 41/152 (26%)
Query: 358 AIYANR--HYLQLYKTRHPERLQCSSQCKTIGDVYIHSSASV-------HP-------TA 401
A+ A R H+L R +Q V IH +A + H TA
Sbjct: 126 ALQAYRIGHWLWNQGRRALAIF-LQNQVSVTFQVDIHPAAKIGRGIMLDHATGIVVGETA 184
Query: 402 IVGPNVSI--------------------DDGAVIGPGVRIKESI-ILQGASIGNHSLVLN 440
++ +VSI +G +IG G +I +I + +GA IG S+VL
Sbjct: 185 VIENDVSILQSVTLGGTGKSGGDRHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQ 244
Query: 441 SIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMD 472
+ + G +R+ G P P+ MD
Sbjct: 245 PVPPHTTAAGVPARIVGKPDSDKPSMD---MD 273
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.0 bits (82), Expect = 0.035
Identities = 35/281 (12%), Positives = 80/281 (28%), Gaps = 74/281 (26%)
Query: 10 LKLKMTDDNARYSMK---YDHKNGYLKLKMTDDNVCLIYKTEMSQDLKKIDNAKKHVESC 66
K D + + DH + K ++ T +S+ + + + V
Sbjct: 33 FDCKDVQDMPKSILSKEEIDH---IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI 89
Query: 67 DFDWGPSEGHKIPTSFPGLTQTFVSC---GWTTNDTTPGPLKGTRFRPLSLDSPKPLFPV 123
++ + S +T+ ++ + N F ++ +P
Sbjct: 90 NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ---------VFAKYNVSRLQPY--- 137
Query: 124 AGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVL--DMVQEYKINIRYLQE-FW-- 178
+ + L+ + K + D+ YK+ + + FW
Sbjct: 138 -------LKLRQALL--ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188
Query: 179 --------DIIH--QQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYFTLEIRSDVVIL 228
++ Q++ + W + + I +H +Q E+R +L
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR-IHSIQA------ELRR---LL 238
Query: 229 MHSLYSMAILV-----------------TVMATEATRQQSV 252
Y +LV ++ T TR + V
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT--TRFKQV 277
Score = 30.6 bits (68), Expect = 1.6
Identities = 42/234 (17%), Positives = 76/234 (32%), Gaps = 61/234 (26%)
Query: 293 FQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQ------LEKEIIMPLAGSGKAYVYQTS 346
+++I +VF+ D F + D +Q L KE I + S A V T
Sbjct: 18 YKDILSVFE---DAFV--------DNFDCKDVQDMPKSILSKEEIDHIIMSKDA-VSGTL 65
Query: 347 KWWSQLKSAGSAIYA-------NRHYLQLYKTRHPERLQCSSQCKTIGDVYIHSSASVHP 399
+ + L S + +Y L E+ Q S + +YI ++
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS----MMTRMYIEQRDRLYN 121
Query: 400 TAIVGP--NVSIDDGAVIGPGVRIKES---------IILQG-ASIGNHSLVLNSIVGRNS 447
V NVS P ++++++ +++ G G + L+ V +
Sbjct: 122 DNQVFAKYNVSRLQ-----PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD--VCLSY 174
Query: 448 KVGN-------WSRVEGTPCDPNP-----NKAFAKMDNPPLFNSNGKLNPSITI 489
KV W + P K ++D S+ N + I
Sbjct: 175 KVQCKMDFKIFWLNL-KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for
structural genomics of infectious diseases; 1.75A
{Vibrio cholerae o1 biovar el tor}
Length = 252
Score = 34.8 bits (81), Expect = 0.046
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 9/42 (21%)
Query: 107 TRFRPLSLDSP-KPLFPVAGLPMIQHHIEACVQVPNLKEIII 147
TR P KPL + G PMIQ E +Q +II
Sbjct: 14 TRL-------PGKPLADIGGKPMIQWVYEQAMQA-GADRVII 47
>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope;
1.80A {Coxiella burnetii}
Length = 256
Score = 34.4 bits (80), Expect = 0.066
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 9/42 (21%)
Query: 107 TRFRPLSLDSP-KPLFPVAGLPMIQHHIEACVQVPNLKEIII 147
TR P K L +AG PMIQH E+ ++ +E++I
Sbjct: 21 TRL-------PGKALVDIAGKPMIQHVYESAIKS-GAEEVVI 54
>3srt_A Maltose O-acetyltransferase; structural genomics, the center
structural genomics of infectious diseases, csgid; 2.50A
{Clostridium difficile}
Length = 188
Score = 33.6 bits (78), Expect = 0.073
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 13/59 (22%)
Query: 367 QLYKTRHP----ERLQCSSQCK--TIGD-VYIHSSASVHPTAIVGPNVSIDDGAVIGPG 418
Q+Y HP R IGD V+I I+ P ++I D VIG G
Sbjct: 110 QIYTAYHPIDAQLRNSGIEYGSPVKIGDNVWIGGGV------IITPGITIGDNVVIGAG 162
Score = 30.2 bits (69), Expect = 1.2
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 14/58 (24%)
Query: 407 VSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKV----GNWSRVEGTPC 460
V I D IG GV II G +IG+ N ++G S V + G PC
Sbjct: 133 VKIGDNVWIGGGV-----IITPGITIGD-----NVVIGAGSVVTKDIPPNTVAVGNPC 180
>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase
KDO complex, cytoplasm, lipopolysaccharide biosynthesis,
magnesium; HET: KDO CTP; 1.90A {Escherichia coli} PDB:
3k8e_C 1vh1_A 3jtj_A*
Length = 264
Score = 34.0 bits (79), Expect = 0.089
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 9/42 (21%)
Query: 107 TRFRPLSLDSP-KPLFPVAGLPMIQHHIEACVQVPNLKEIII 147
TR P KPL + G PMI H +E + + II+
Sbjct: 30 TRL-------PGKPLVDINGKPMIVHVLERARES-GAERIIV 63
>1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A
{Escherichia coli} SCOP: b.81.1.3
Length = 182
Score = 33.2 bits (77), Expect = 0.092
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 13/59 (22%)
Query: 367 QLYKTRHP----ERLQCSSQCK--TIGD-VYIHSSASVHPTAIVGPNVSIDDGAVIGPG 418
+Y HP R + K TIG+ V+I A ++ P V+I D V+ G
Sbjct: 106 HIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRA------VINPGVTIGDNVVVASG 158
Score = 30.2 bits (69), Expect = 0.94
Identities = 21/100 (21%), Positives = 31/100 (31%), Gaps = 41/100 (41%)
Query: 385 TIGD-VYIHSSASVHPTAIVGPNVSI------------DDGAVIGPGVRIKE-------S 424
IGD + P V I + GA +G V I +
Sbjct: 94 RIGDNCML------------APGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRA 141
Query: 425 IILQGASIGNHSLVLNSIVGRNSKV----GNWSRVEGTPC 460
+I G +IG+ N +V + V + V G P
Sbjct: 142 VINPGVTIGD-----NVVVASGAVVTKDVPDNVVVGGNPA 176
>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural
genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13
PDB: 1vh3_A 3duv_A*
Length = 262
Score = 33.7 bits (78), Expect = 0.13
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 9/42 (21%)
Query: 107 TRFRPLSLDSP-KPLFPVAGLPMIQHHIEACVQVPNLKEIII 147
+R P KPL + G PMIQH E +Q +II
Sbjct: 14 SRL-------PGKPLADIKGKPMIQHVFEKALQS-GASRVII 47
>1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix;
HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB:
1kqa_A* 1kru_A* 1krv_A*
Length = 203
Score = 32.9 bits (76), Expect = 0.13
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 13/59 (22%)
Query: 367 QLYKTRHP----ERLQCSSQCK--TIGD-VYIHSSASVHPTAIVGPNVSIDDGAVIGPG 418
L T HP R TIG+ V+I S ++ P V+I D +VIG G
Sbjct: 109 TLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHV------VINPGVTIGDNSVIGAG 161
Score = 30.6 bits (70), Expect = 0.78
Identities = 23/100 (23%), Positives = 33/100 (33%), Gaps = 41/100 (41%)
Query: 385 TIGD-VYIHSSASVHPTAIVGPNVSI------------DDGAVIGPGVRIKE-------S 424
TIGD V I PNV++ +G + + I
Sbjct: 97 TIGDNVLI------------APNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHV 144
Query: 425 IILQGASIGNHSLVLNSIVGRNSKV----GNWSRVEGTPC 460
+I G +IG+ NS++G S V G PC
Sbjct: 145 VINPGVTIGD-----NSVIGAGSIVTKDIPPNVVAAGVPC 179
>3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural
genomics, center for structural genomics of infec
diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1
biovar eltor} PDB: 3ect_A*
Length = 195
Score = 32.9 bits (76), Expect = 0.16
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 13/59 (22%)
Query: 367 QLYKTRHP----ERLQCSSQCK--TIGD-VYIHSSASVHPTAIVGPNVSIDDGAVIGPG 418
Q Y H R + CK I D V+I + ++ V+I +V+
Sbjct: 110 QFYTASHSLDYRRRQAWETICKPIVIEDDVWIGGNV------VINQGVTIGARSVVAAN 162
Score = 30.6 bits (70), Expect = 0.75
Identities = 24/100 (24%), Positives = 32/100 (32%), Gaps = 41/100 (41%)
Query: 385 TIGD-VYIHSSASVHPTAIVGPNVSI------------DDGAVIGPGVRIKE-------S 424
TIGD V I GP+ I + I++
Sbjct: 98 TIGDHVLI------------GPSTQFYTASHSLDYRRRQAWETICKPIVIEDDVWIGGNV 145
Query: 425 IILQGASIGNHSLVLNSIVGRNSKV----GNWSRVEGTPC 460
+I QG +IG S+V NS V + V GTP
Sbjct: 146 VINQGVTIGA-----RSVVAANSVVNQDVPPDTLVGGTPA 180
>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171,
ISPD_THET8, ISPD, structural genomics PSI; 2.20A
{Thermus thermophilus HB8}
Length = 236
Score = 33.0 bits (76), Expect = 0.18
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 7/43 (16%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIII 147
G R PK V G +++ + A E+++
Sbjct: 35 NGLRLGR----GPKAFLQVGGRTLLEWTLAAFRDAA---EVLV 70
>2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus
kaustophilus structural genomics, PSI; 1.74A
{Geobacillus kaustophilus} PDB: 2ic7_A
Length = 185
Score = 32.5 bits (75), Expect = 0.20
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 13/59 (22%)
Query: 367 QLYKTRHP----ERLQCSSQCK--TIGD-VYIHSSASVHPTAIVGPNVSIDDGAVIGPG 418
+Y HP ER K IG V+I A ++ P V+I D AVI G
Sbjct: 108 HIYTATHPLDPHERNSGLEYGKPVVIGHNVWIGGRA------VINPGVTIGDNAVIASG 160
Score = 30.2 bits (69), Expect = 1.2
Identities = 21/100 (21%), Positives = 32/100 (32%), Gaps = 41/100 (41%)
Query: 385 TIGD-VYIHSSASVHPTAIVGPNVSI------------DDGAVIGPGVRIKE-------S 424
IGD +I GP V I + G G V I +
Sbjct: 96 RIGDHCFI------------GPGVHIYTATHPLDPHERNSGLEYGKPVVIGHNVWIGGRA 143
Query: 425 IILQGASIGNHSLVLNSIVGRNSKV----GNWSRVEGTPC 460
+I G +IG+ N+++ + V + V G P
Sbjct: 144 VINPGVTIGD-----NAVIASGAVVTKDVPANAVVGGNPA 178
>3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix,
acyltransferase, struct genomics; 2.15A {Bacillus
anthracis} PDB: 3igj_A*
Length = 190
Score = 32.5 bits (75), Expect = 0.20
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 13/59 (22%)
Query: 367 QLYKTRHP----ERLQCSSQCK--TIGD-VYIHSSASVHPTAIVGPNVSIDDGAVIGPG 418
+Y HP ER K IG+ V++ A I+ P VSI D AVI G
Sbjct: 112 HIYTATHPLHPVERNSGKEYGKPVKIGNNVWVGGGA------IINPGVSIGDNAVIASG 164
Score = 29.8 bits (68), Expect = 1.4
Identities = 22/100 (22%), Positives = 30/100 (30%), Gaps = 41/100 (41%)
Query: 385 TIGD-VYIHSSASVHPTAIVGPNVSI------------DDGAVIGPGVRIKE-------S 424
IGD P V I + G G V+I +
Sbjct: 100 RIGDHCMF------------APGVHIYTATHPLHPVERNSGKEYGKPVKIGNNVWVGGGA 147
Query: 425 IILQGASIGNHSLVLNSIVGRNSKV----GNWSRVEGTPC 460
II G SIG+ N+++ + V N V G P
Sbjct: 148 IINPGVSIGD-----NAVIASGAVVTKDVPNNVVVGGNPA 182
>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP;
2.10A {Aquifex aeolicus}
Length = 234
Score = 32.9 bits (76), Expect = 0.20
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 10/42 (23%)
Query: 107 TRFRPLSLDSP-KPLFPVAGLPMIQHHIEACVQVPNLKEIII 147
TR KPL + G P+I+ +E V+ + +I+
Sbjct: 14 TRL-------KEKPLKNLLGKPLIRWVVEGLVKT--GERVIL 46
>3ftt_A Putative acetyltransferase sacol2570; galactoside
O-acetyltransferase, enzyme, structural genomics,
acyltransferase; 1.60A {Staphylococcus aureus subsp}
PDB: 3v4e_A*
Length = 199
Score = 32.5 bits (75), Expect = 0.21
Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 13/59 (22%)
Query: 367 QLYKTRHP----ERLQCSSQCK--TIGD-VYIHSSASVHPTAIVGPNVSIDDGAVIGPG 418
Y HP R + + IG + V P V+I +G+VIG G
Sbjct: 108 GFYTATHPLNFHHRNEGFEKAGPIHIGSNTWFGGHV------AVLPGVTIGEGSVIGAG 160
Score = 30.6 bits (70), Expect = 0.79
Identities = 23/100 (23%), Positives = 31/100 (31%), Gaps = 41/100 (41%)
Query: 385 TIGD-VYIHSSASVHPTAIVGPNVSI------------DDGAVIGPGVRIKE-------S 424
TIGD V+I GPN ++G + I
Sbjct: 96 TIGDNVFI------------GPNCGFYTATHPLNFHHRNEGFEKAGPIHIGSNTWFGGHV 143
Query: 425 IILQGASIGNHSLVLNSIVGRNSKV----GNWSRVEGTPC 460
+L G +IG S++G S V S G PC
Sbjct: 144 AVLPGVTIGE-----GSVIGAGSVVTKDIPPHSLAVGNPC 178
>1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix
domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB:
1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A*
Length = 209
Score = 31.4 bits (71), Expect = 0.47
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 10/50 (20%)
Query: 402 IVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVL-----NSIVGRN 446
I+G +V I VI PGV+I + GA + +S+V+ + G N
Sbjct: 115 IIGNDVWIGKDVVIMPGVKIGD-----GAIVAANSVVVKDIAPYMLAGGN 159
Score = 27.9 bits (62), Expect = 6.8
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 7/35 (20%)
Query: 385 TIG-DVYIHSSASVHPTAIVGPNVSIDDGAVIGPG 418
IG DV+I ++ P V I DGA++
Sbjct: 115 IIGNDVWIGKDV------VIMPGVKIGDGAIVAAN 143
>4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic
resistance, center for struc genomics of infectious
diseases (csgid); 2.70A {Staphylococcus aureus}
Length = 219
Score = 31.5 bits (71), Expect = 0.56
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 10/50 (20%)
Query: 402 IVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVL-----NSIVGRN 446
+G +V I I PGV+I + GA I ++V SIVG N
Sbjct: 120 EIGNDVWIGRDVTIMPGVKIGD-----GAIIAAEAVVTKNVAPYSIVGGN 164
>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics,
center for STR genomics of infectious diseases, csgid;
2.61A {Vibrio cholerae o1 biovar el tor}
Length = 212
Score = 30.7 bits (69), Expect = 0.82
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 10/50 (20%)
Query: 402 IVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVL-----NSIVGRN 446
I+G +V I A+I PGV+I GA I + S+V +VG N
Sbjct: 113 IIGHDVWIGTEAMIMPGVKIGH-----GAIIASRSVVTKDVAPYEVVGSN 157
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.85
Identities = 8/36 (22%), Positives = 11/36 (30%), Gaps = 16/36 (44%)
Query: 51 QDLKKIDNA-KKHVESCDFDWGPSEGHKIPTSFPGL 85
Q LKK+ + K + S P L
Sbjct: 20 QALKKLQASLKLYA---------------DDSAPAL 40
>2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL;
HET: SOP; 1.90A {Neisseria meningitidis serogroup Y}
PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A*
Length = 215
Score = 30.5 bits (69), Expect = 1.1
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 14/60 (23%)
Query: 367 QLYKT-RHP----ERLQCSSQCK--TIGD-VYIHSSASVHPTAIVGPNVSIDDGAVIGPG 418
++ T HP E + + K IG+ V++ + + V I + V+G
Sbjct: 114 EIRNTDMHPIYSLENGERINHGKDVIIGNHVWLGRNV------TILKGVCIPNNVVVGSH 167
>1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix;
3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB:
2xat_A*
Length = 212
Score = 29.9 bits (67), Expect = 1.5
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 10/50 (20%)
Query: 402 IVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVL-----NSIVGRN 446
++G V I A+ PGVR+ GA IG+ +LV +IVG N
Sbjct: 112 LIGHEVWIGTEAMFMPGVRVGH-----GAIIGSRALVTGDVEPYAIVGGN 156
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex,
nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis,
ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Length = 83
Score = 28.5 bits (63), Expect = 1.5
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 147 ILGYYPSADLQKFVLDMVQEYKINIRYLQE 176
++ Y M+ EYK I L+E
Sbjct: 52 LVSLYRDGSTAAIYEQMINEYKRRIEVLKE 81
>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose,
carbohydrate, pyrophosphorylase; 1.95A {Escherichia
coli}
Length = 302
Score = 30.2 bits (69), Expect = 1.7
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 106 GTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIII 147
GTR P + PK + P+ P+IQ+ + C+ + EI++
Sbjct: 19 GTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAA-GITEIVL 59
>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase,
nucleotidyltransferase, metabolism; HET: GUD; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 323
Score = 29.4 bits (67), Expect = 2.5
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 106 GTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIII 147
GTRF P + PK L PV P I+ ++ + I
Sbjct: 23 GTRFLPATKTVPKELLPVVDTPGIELIAAEAAEL-GATRLAI 63
>3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix
polysia; HET: PEG; 1.70A {Escherichia coli}
Length = 252
Score = 29.4 bits (66), Expect = 2.5
Identities = 20/98 (20%), Positives = 30/98 (30%), Gaps = 36/98 (36%)
Query: 385 TIGD-------VYIHSSASVHPTA--------------IVGPNVSIDDGAVIGPGVRI-K 422
TIG V + ++ HP I+ V + I GV +
Sbjct: 128 TIGHDCMIARDVIL-RASDGHPIFDIHSKKRINWAKDIIISSYVWVGRNVSIMKGVSVGS 186
Query: 423 ESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPC 460
S+I G SIV ++ V + G P
Sbjct: 187 GSVI--GY---------GSIVTKD--VPSMCAAAGNPA 211
Score = 28.6 bits (64), Expect = 4.1
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 14/60 (23%)
Query: 367 QLY-KTRHP----ERLQCSSQCK--TIGD-VYIHSSASVHPTAIVGPNVSIDDGAVIGPG 418
L HP + + K I V++ + + VS+ G+VIG G
Sbjct: 140 ILRASDGHPIFDIHSKKRINWAKDIIISSYVWVGRNV------SIMKGVSVGSGSVIGYG 193
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase,
ATP-binding, microtubule INT and trafficking domain,
nucleotide-binding; HET: SRT; 2.40A {Sulfolobus
solfataricus} PDB: 2v6y_B*
Length = 83
Score = 27.3 bits (60), Expect = 3.0
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 147 ILGYYPSADLQKFVLDMVQEYKINIRYLQE 176
I+ YP + + M+ EYK I YL++
Sbjct: 44 IIVLYPESVARTAYEQMINEYKKRISYLEK 73
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel,
FAD-binding domain, NADH-binding domain, oxidoreductase;
HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1
PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Length = 275
Score = 28.9 bits (65), Expect = 3.2
Identities = 13/83 (15%), Positives = 28/83 (33%), Gaps = 15/83 (18%)
Query: 309 NGNYMVNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSA-----IYANR 363
G + + I+ K + M G+G + Q + +K ++AN+
Sbjct: 128 KGKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAI--MKDPDDHTVCHLLFANQ 185
Query: 364 HY--------LQLYKTRHPERLQ 378
L+ + +H R +
Sbjct: 186 TEKDILLRPELEELRNKHSARFK 208
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase,
membrane pyrophosphotase, ION pump; 2.60A {Thermotoga
maritima} PDB: 4av6_A
Length = 735
Score = 29.4 bits (66), Expect = 3.9
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Query: 57 DNAKKHVESCDFDWGP--SEGHK 77
DNAKK++E+ + + SE HK
Sbjct: 669 DNAKKYLEAGNLEGYGKGSEPHK 691
>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A
{Helicobacter pylori} PDB: 3juj_A*
Length = 281
Score = 29.0 bits (66), Expect = 4.1
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 106 GTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIII 147
GTRF P++ PK + P+ P+IQ+ +E ++ + + I
Sbjct: 13 GTRFLPITKTIPKEMLPIVDKPLIQYAVEEAMEA-GCEVMAI 53
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme,
oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A
{Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Length = 270
Score = 28.2 bits (63), Expect = 6.3
Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 12/79 (15%)
Query: 312 YMVNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAG----SAIYANRHY-- 365
Y G + + + M GSG +YQ + + + +YANR
Sbjct: 121 YTGRGSFVINGKQRNARRLAMICGGSGITPMYQIIQAVLRDQPEDHTEMHLVYANRTEDD 180
Query: 366 ------LQLYKTRHPERLQ 378
L + +P+RL+
Sbjct: 181 ILLRDELDRWAAEYPDRLK 199
>3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix,
OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A
Length = 313
Score = 28.2 bits (63), Expect = 6.3
Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 32/85 (37%)
Query: 398 HPTAIVGPNVSIDDG--------AVIGPGVRIKESIILQGAS------------------ 431
HP A + + ID G A+IG RI +S+ L
Sbjct: 167 HPGASIKGHFFIDHGVGVVIGETAIIGEWCRIYQSVTLGAMHFQEEGGVIKRGTKRHPTV 226
Query: 432 -----IGNHSLVLNSI-VGRNSKVG 450
IG + VL +I VG + ++G
Sbjct: 227 GDYVTIGTGAKVLGNIIVGSHVRIG 251
>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8,
structural genomics, P protein structure initiative;
2.00A {Bacteroides vulgatus atcc 8482}
Length = 310
Score = 28.2 bits (63), Expect = 6.3
Identities = 16/86 (18%), Positives = 34/86 (39%), Gaps = 33/86 (38%)
Query: 398 HPTAIVGPNVSIDDG--------AVIGPGVRIKESIILQGAS------------------ 431
HP A +G + +ID G ++IG V++ + + L S
Sbjct: 194 HPGAQIGHHFTIDHGTGVVIGATSIIGNNVKLYQGVTLGAKSFPLDNNGNPIKGIPRHPI 253
Query: 432 ------IGNHSLVLNSI-VGRNSKVG 450
+ +++ +L + +G+ + VG
Sbjct: 254 LEDDVIVYSNATILGRVTIGKGATVG 279
>2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase;
HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A*
2x60_A* 2x5s_A*
Length = 336
Score = 28.2 bits (64), Expect = 6.6
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 105 KGTRFRPLSLDS-PKPLFPVAG-LPMIQHHIEACVQVPNLKEIII 147
G RF PLS PK + G +++ E ++ + K++I+
Sbjct: 11 SGERFWPLSTPETPKQFLKLFGNKSLMRWTFERVLEEMDPKDVIV 55
>2cu2_A Putative mannose-1-phosphate guanylyl transferase;
mannose-1-phosphate geranyltransferase, thermus
thermophilus structural genomics; 2.20A {Thermus
thermophilus} SCOP: b.81.4.1 c.68.1.20
Length = 337
Score = 28.2 bits (64), Expect = 7.1
Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 105 KGTRFRPLSLDS-PKPLFPVAG-LPMIQHHIEACVQVPNLKEIII 147
+G R PLS + PKP P+ +++ +E + + ++
Sbjct: 12 RGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLL 56
>1n7v_A Adsorption protein P2; bacteriophage PRD1, viral receptor-binding,
beta-propeller, proline-rich, antibiotic-resistance,
viral protein; 2.20A {Enterobacteria phage PRD1} SCOP:
b.126.1.1 PDB: 1n7u_A
Length = 555
Score = 28.2 bits (62), Expect = 7.2
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Query: 456 EGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKELTR 515
EG+PC + + P+ G+L P + + + + G+ LN P +
Sbjct: 272 EGSPCAYEAGIILVRQTSNPMNAVAGRLVPYVEDIAVDIFLTGKFFTLNP---PLRITNN 328
Query: 516 SFKNE 520
F ++
Sbjct: 329 YFADD 333
>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA);
alpha-beta protein, structural genomics, PSI-2, protein
STRU initiative; 2.31A {Archaeoglobus fulgidus}
Length = 208
Score = 27.7 bits (62), Expect = 8.5
Identities = 6/31 (19%), Positives = 10/31 (32%), Gaps = 5/31 (16%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEA 135
G R K + G +I+ +E
Sbjct: 10 VGRRI-----GMEKTEVMLCGKKLIEWVLEK 35
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.415
Gapped
Lambda K H
0.267 0.0827 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,022,409
Number of extensions: 474646
Number of successful extensions: 1176
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1019
Number of HSP's successfully gapped: 159
Length of query: 523
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 425
Effective length of database: 3,965,535
Effective search space: 1685352375
Effective search space used: 1685352375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.3 bits)