RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17795
(523 letters)
>d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId:
287]}
Length = 292
Score = 78.3 bits (193), Expect = 1e-16
Identities = 39/224 (17%), Positives = 73/224 (32%), Gaps = 35/224 (15%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMV 164
GTR P +L K L PV PMI + + + ++EI+I+ + +L
Sbjct: 11 SGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLA-GIREILIISTPQDTPRFQQLLGDG 69
Query: 165 QEYKINIRYLQEFWD-------IIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYF 217
+ ++++Y + +I + + YG H E +
Sbjct: 70 SNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYG------HDFHELLGS 123
Query: 218 TLEIRSDVVILMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFV 277
+ ++ +V A + YG +V Q + EKP
Sbjct: 124 ASQRQTG--------------ASVFAYHVLDPER--YG-VVEFDQGGKAISLEEKPLEPK 166
Query: 278 STLVNCGVYLFSLDIFQNIAAVFQSKQDEF----YNGNYMVNGK 317
S G+Y + + + S + E N Y+ G+
Sbjct: 167 SNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQ 210
>d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]}
Length = 291
Score = 70.9 bits (174), Expect = 3e-14
Identities = 38/231 (16%), Positives = 72/231 (31%), Gaps = 49/231 (21%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMV 164
GTR P++ K L P+ PMI + + + ++EI+I+ + +L
Sbjct: 11 SGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLA-GIREILIITTPEDKGYFQRLLGDG 69
Query: 165 QEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYFTLE-IRS 223
E+ I + Y ++ S G+ +A +
Sbjct: 70 SEFGIQLEYAEQ---------------------PSPDGL--------AQAFIIGETFLNG 100
Query: 224 DVVILMHS--LYSMAILVTVMATEATRQQSVY-----------YGCIVRKQQTSEISHYV 270
+ L+ ++ + A R + +G + IS
Sbjct: 101 EPSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQVMDPERFGVVEFDDNFRAIS-LE 159
Query: 271 EKPSTFVSTLVNCGVYLFSLDIFQNIAAVFQSKQDEFY----NGNYMVNGK 317
EKP S G+Y + + + V S++ E N Y+ G
Sbjct: 160 EKPKQPKSNWAVTGLYFYDSKVVEYAKQVKPSERGELEITSINQMYLEAGN 210
>d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 295
Score = 70.3 bits (172), Expect = 5e-14
Identities = 35/214 (16%), Positives = 72/214 (33%), Gaps = 27/214 (12%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMV 164
GTR P++ K L P+ PMI + + + +++I+I+ L + +L
Sbjct: 13 SGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLA-GIRDILIISTPRDLPLYRDLLGDG 71
Query: 165 QEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNSLH-----WVQEAVYFTL 219
++ + Y + R + + ++ + V F
Sbjct: 72 SQFGVRFSYRVQ---------------EEPRGIADAFIVGKDFIGDSKVALVLGDNVFYG 116
Query: 220 EIRSDVVILMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVST 279
S+++ SL A + + +G + + IS EKPS S
Sbjct: 117 HRFSEILRRAASLEDGA---VIFGYYVRDPRP--FGVVEFDSEGRVIS-IEEKPSRPKSN 170
Query: 280 LVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYM 313
V G+Y + + + + S + E +
Sbjct: 171 YVVPGLYFYDNQVVEIARRIEPSDRGELEITSVN 204
>d1914a1 d.49.1.1 (A:4004-4081) Signal recognition particle 9KDa
protein, SRP9 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 78
Score = 64.4 bits (157), Expect = 9e-14
Identities = 20/41 (48%), Positives = 30/41 (73%)
Query: 17 DNARYSMKYDHKNGYLKLKMTDDNVCLIYKTEMSQDLKKID 57
R +KY H +G L +K+TDD VCL+Y+T+ +QD+KKI+
Sbjct: 20 MKVRVVLKYRHVDGNLCIKVTDDLVCLVYRTDQAQDVKKIE 60
>d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase
small subunit, catalytic domain {Potato (Solanum
tuberosum) [TaxId: 4113]}
Length = 307
Score = 65.0 bits (157), Expect = 4e-12
Identities = 30/272 (11%), Positives = 72/272 (26%), Gaps = 14/272 (5%)
Query: 105 KGTRFRPLSLDSPKPLFPVAG-LPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDM 163
GTR PL+ KP P+ +I + C+ K ++ + ++ +
Sbjct: 21 AGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAY 80
Query: 164 VQEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYFTLEIRS 223
Q ++ + Y ++ + +
Sbjct: 81 ASNMGGYKNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDHLYR 140
Query: 224 DVVILMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNC 283
+ +A ++ +++ + I + EKP +
Sbjct: 141 MDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKV 200
Query: 284 GVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNG-------KDTDFNHIQLEKEIIMPLAG 336
+ LD + + G Y+++ +D E+I
Sbjct: 201 DTTILGLDDKR-----AKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATS 255
Query: 337 SG-KAYVYQTSKWWSQLKSAGSAIYANRHYLQ 367
G + Y +W + + + AN +
Sbjct: 256 LGMRVQAYLYDGYWEDIGTIEAFYNANLGITK 287
>d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase
RfbF {Salmonella typhimurium [TaxId: 90371]}
Length = 259
Score = 63.6 bits (153), Expect = 6e-12
Identities = 32/262 (12%), Positives = 77/262 (29%), Gaps = 24/262 (9%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMV 164
GTR ++ PKP+ + G P++ H ++ +K+ II Y ++++ +
Sbjct: 12 LGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVH-GIKDFIICCGYKGYVIKEYFANYF 70
Query: 165 QEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYFTLEIRSD 224
++ E +H + T S+ R
Sbjct: 71 LHMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKDDEAFLFTYG 130
Query: 225 VVILMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVNCG 284
+ + + +AT + G + ++ ++N G
Sbjct: 131 DGVADLDIKATIDFHKAHGKKATLTATFPPGRFGALDIQAGQVRSFQEKPKGDGAMINGG 190
Query: 285 VYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQ 344
++ + + I + E+E +M LA G+ ++
Sbjct: 191 FFVLNPSVIDLIDNDATT-----------------------WEQEPLMTLAQQGELMAFE 227
Query: 345 TSKWWSQLKSAGSAIYANRHYL 366
+W + + +Y +
Sbjct: 228 HPGFWQPMDTLRDKVYLEGLWE 249
>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate
uridyltransferase GlmU, C-terminal domain {Escherichia
coli [TaxId: 562]}
Length = 78
Score = 56.4 bits (136), Expect = 6e-11
Identities = 14/65 (21%), Positives = 27/65 (41%)
Query: 387 GDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRN 446
G + + I+ NV++ IG G IK S+I I +++V ++ +
Sbjct: 13 GTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAA 72
Query: 447 SKVGN 451
+G
Sbjct: 73 CTIGP 77
>d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 229
Score = 55.4 bits (132), Expect = 3e-09
Identities = 20/106 (18%), Positives = 35/106 (33%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMV 164
GTR RPL+ ++PK L V P+I++ IE + III+GY V
Sbjct: 13 LGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLKEQFDYLKEKYGV 72
Query: 165 QEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNSLHW 210
+ + + ++ + +
Sbjct: 73 RLVFNDKYADYNNFYSLYLVKEELANSYVIDADNYLFKNMFRNDLT 118
>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase
{Escherichia coli, gene lpxA [TaxId: 562]}
Length = 262
Score = 53.3 bits (127), Expect = 2e-08
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Query: 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVL-NSIVGRNSKV 449
I SA VHPTAIV SI A IGP I+ IG +++ + +V ++K+
Sbjct: 2 IDKSAFVHPTAIVEEGASIGANAHIGPFC-----IVGPHVEIGEGTVLKSHVVVNGHTKI 56
Query: 450 GNWSRVEGTPCDPNPNKAFAKMDNP 474
G + + N+ P
Sbjct: 57 GRDNEIYQFASIGEVNQDLKYAGEP 81
Score = 38.7 bits (89), Expect = 0.001
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 388 DVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESII 426
I ++A + P IVGP+V I +G V+ V +
Sbjct: 17 GASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTK 55
Score = 36.4 bits (83), Expect = 0.006
Identities = 11/96 (11%), Positives = 28/96 (29%), Gaps = 7/96 (7%)
Query: 402 IVGPNVSIDDGAVIGPGVRI-KESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTP- 459
++ + + A++ G I + I +G + +G + + + V G
Sbjct: 1 MIDKSAFVHPTAIVEEGASIGANAHIGPFCIVGP-----HVEIGEGTVLKSHVVVNGHTK 55
Query: 460 CDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVT 495
+ + P+ +GD
Sbjct: 56 IGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRNR 91
>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase
{Helicobacter pylori [TaxId: 210]}
Length = 259
Score = 51.6 bits (122), Expect = 6e-08
Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 5/76 (6%)
Query: 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVG 450
I +A + P A + V I + VIG GV++ E G + N+ + +
Sbjct: 3 IAKTAIISPKAEINKGVEIGEFCVIGDGVKLDE-----GVKLHNNVTLQGHTFVGKNTEI 57
Query: 451 NWSRVEGTPCDPNPNK 466
V GT K
Sbjct: 58 FPFAVLGTQPQDLKYK 73
Score = 41.2 bits (95), Expect = 2e-04
Identities = 10/69 (14%), Positives = 24/69 (34%)
Query: 388 DVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNS 447
I+ + ++G V +D+G + V ++ + + VL +
Sbjct: 12 KAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLK 71
Query: 448 KVGNWSRVE 456
G +S +
Sbjct: 72 YKGEYSELI 80
>d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate
uridyltransferase GlmU, N-terminal domain {Escherichia
coli [TaxId: 562]}
Length = 248
Score = 48.9 bits (115), Expect = 5e-07
Identities = 21/113 (18%), Positives = 40/113 (35%), Gaps = 8/113 (7%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMV 164
KGTR D PK L +AG M+QH I+A ++ ++ G+ + +
Sbjct: 12 KGTRMYS---DLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHG-----GDLLKQAL 63
Query: 165 QEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYF 217
++ +N E H + ++ + YG + +
Sbjct: 64 KDDNLNWVLQAEQLGTGHAMQQAAPFFADDEDILMLYGDVPLISVETLQRLRD 116
>d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate
uridyltransferase GlmU, N-terminal domain {Streptococcus
pneumoniae [TaxId: 1313]}
Length = 250
Score = 48.9 bits (115), Expect = 5e-07
Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 5/90 (5%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMV 164
KGTR + D PK L VAG+ M++H + + E + A+L + VL
Sbjct: 11 KGTRMKS---DLPKVLHKVAGISMLEHVFRSVGAIQP--EKTVTVVGHKAELVEEVLAGQ 65
Query: 165 QEYKINIRYLQEFWDIIHQQICISLYWTWY 194
E+ L ++ + +
Sbjct: 66 TEFVTQSEQLGTGHAVMMTEPILEGLSGHT 95
>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella
enterica [TaxId: 28901]}
Length = 320
Score = 47.1 bits (111), Expect = 2e-06
Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 387 GDVYIHS-SASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLN-SIVG 444
GD +I+ +A + N I + VRI +++ + A I + + + + +
Sbjct: 55 GDCWIYDENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQ 114
Query: 445 RNSKVGNW 452
+S
Sbjct: 115 SSSVREEC 122
Score = 41.4 bits (96), Expect = 2e-04
Identities = 13/71 (18%), Positives = 27/71 (38%)
Query: 388 DVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNS 447
+ + + A + ++ + IG V I + I GA I ++ + +S V
Sbjct: 63 NAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREEC 122
Query: 448 KVGNWSRVEGT 458
+ +RV
Sbjct: 123 AIYGDARVLNQ 133
Score = 38.3 bits (88), Expect = 0.002
Identities = 13/74 (17%), Positives = 25/74 (33%)
Query: 387 GDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRN 446
I +A + + NV I D I + I +I + S+ + +
Sbjct: 68 AGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAIYGD 127
Query: 447 SKVGNWSRVEGTPC 460
++V N S +
Sbjct: 128 ARVLNQSEILAIQG 141
Score = 29.4 bits (65), Expect = 0.99
Identities = 22/238 (9%), Positives = 55/238 (23%), Gaps = 15/238 (6%)
Query: 221 IRSDVVILMHSLYSMAILV--TVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVS 278
+ ++V I + A + ++ T Q S ++ ++
Sbjct: 84 LYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAIYGDARVLNQSEILAIQGLT 143
Query: 279 TLVNCGVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSG 338
+ ++ + V Q + + + L +
Sbjct: 144 HEHAQILQIYDRATVNHSRIVHQVQLYGNATITHAFIEHRAEVFDFALIEGDKDN----N 199
Query: 339 KAYVYQTSKWWSQLKSAGSAIYANRHYLQLYKTRHPERLQCSSQCKTIGDVYIHSSASVH 398
+ AG+ A + ++ C V + A V
Sbjct: 200 VWICDCAKVYGHARVIAGTEEDAIPTLRYSSQVAEHALIEG--NCVLKHHVLVGGHAEVR 257
Query: 399 PTAI-------VGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKV 449
I + + I +I V I + L ++ ++
Sbjct: 258 GGPILLDDRVLIEGHACIQGEILIERQVEISGRAAVIAFDDNTIHLRGPKVINGEDRI 315
>d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179
{Thermus thermophilus [TaxId: 274]}
Length = 231
Score = 44.1 bits (103), Expect = 1e-05
Identities = 11/83 (13%), Positives = 28/83 (33%), Gaps = 5/83 (6%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMV 164
K + K L P G PM++ +EA + + + L +
Sbjct: 12 KEAWAERFGV-GSKALVPYRGRPMVEWVLEALYAAG----LSPVYVGENPGLVPAPALTL 66
Query: 165 QEYKINIRYLQEFWDIIHQQICI 187
+ + L++ + + ++ +
Sbjct: 67 PDRGGLLENLEQALEHVEGRVLV 89
>d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl
transferase (GDP)/mannose-6-phosphate isomerase TTHA1750
{Thermus thermophilus [TaxId: 274]}
Length = 268
Score = 44.2 bits (103), Expect = 1e-05
Identities = 32/259 (12%), Positives = 72/259 (27%), Gaps = 21/259 (8%)
Query: 105 KGTRFRPLSLDS-PKPLFPVAG-LPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLD 162
+G R PLS + PKP P+ +++ +E + + + +
Sbjct: 12 RGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTL------------LAVR 59
Query: 163 MVQEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYFTLEIR 222
QE + + G R + V R
Sbjct: 60 RDQEAVARPYADGIRLLLEPLGRDTAGAVLLGVAEALKEGAERLLVLPADHYVGDDEAYR 119
Query: 223 SDVVILMHSLYSMAILVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVSTLVN 282
+ ++ + ++ + + Y R+ +VEKPS +
Sbjct: 120 EALATMLEAAEEGFVVALGLRPTRPETEYGYIRLGPREGAWYRGEGFVEKPSYAEALEYI 179
Query: 283 CGVYLFSLDIFQNIAAVFQSKQDEFYNGNY-----MVNGKDTDFNHIQLEKEII--MPLA 335
Y+++ +F A ++ ++ G + + L K I +
Sbjct: 180 RKGYVWNGGVFAFAPATMAELFRRHLPSHHEALERLLAGASLEEVYAGLPKISIDYGVME 239
Query: 336 GSGKAYVYQTSKWWSQLKS 354
+ + V W + +
Sbjct: 240 KAERVRVVLGRFPWDDVGN 258
>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon
Methanosarcina thermophila [TaxId: 2210]}
Length = 210
Score = 39.6 bits (91), Expect = 4e-04
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGV 419
I +A + P A V V+I ++ P
Sbjct: 25 IDPTAYIDPQASVIGEVTIGANVMVSPMA 53
Score = 32.7 bits (73), Expect = 0.067
Identities = 12/76 (15%), Positives = 22/76 (28%)
Query: 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVG 450
S+ + PTA + P S+ IG V + ++ + S V +
Sbjct: 19 EPSAPVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLH 78
Query: 451 NWSRVEGTPCDPNPNK 466
+ N
Sbjct: 79 ALETINEEGEPIEDNI 94
Score = 31.9 bits (71), Expect = 0.12
Identities = 18/139 (12%), Positives = 33/139 (23%), Gaps = 17/139 (12%)
Query: 388 DVYIHSSASVHPTAIVGPNVSIDDGAV----------IGPGVRIKESIILQGAS------ 431
YI ASV +G NV + A +G +++ ++L
Sbjct: 28 TAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEG 87
Query: 432 -IGNHSLVLNSIVGRNSKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITIL 490
++V +GN + P + +L
Sbjct: 88 EPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFKSKVGNNCVL 147
Query: 491 GDGVTVPGELIVLNSIVLP 509
G I +
Sbjct: 148 EPRSAAIGVTIPDGRYIPA 166
>d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol
(CDP-me) synthase (IspD, YgbP) {Thermotoga maritima
[TaxId: 2336]}
Length = 221
Score = 39.2 bits (90), Expect = 6e-04
Identities = 8/83 (9%), Positives = 27/83 (32%), Gaps = 3/83 (3%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMV 164
KG R + PK + G + ++ + ++ + ++I+ ++ + +
Sbjct: 13 KGERMSE---NVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFEVVEKRVFHE 69
Query: 165 QEYKINIRYLQEFWDIIHQQICI 187
+ I + +
Sbjct: 70 KVLGIVEGGDTRSQSVRSALEFL 92
>d1w77a1 c.68.1.13 (A:75-300)
4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)
synthase (IspD, YgbP) {Thale cress (Arabidopsis
thaliana), chloroplast [TaxId: 3702]}
Length = 226
Score = 38.9 bits (89), Expect = 7e-04
Identities = 14/90 (15%), Positives = 34/90 (37%), Gaps = 3/90 (3%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMV 164
+G R + PK P+ G P+ + ++P +KEI+++ D+ + + +
Sbjct: 14 QGKRMKM---SMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEESI 70
Query: 165 QEYKINIRYLQEFWDIIHQQICISLYWTWY 194
+E D ++ + +
Sbjct: 71 DVDLRFAIPGKERQDSVYSGLQEIDVNSEL 100
>d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol
(CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae
[TaxId: 485]}
Length = 226
Score = 38.5 bits (88), Expect = 9e-04
Identities = 12/128 (9%), Positives = 29/128 (22%), Gaps = 5/128 (3%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMV 164
G RF D PK + +++H + + + +++ K
Sbjct: 13 IGVRFG---ADKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPEDTFADKVQTAFP 69
Query: 165 QEYKINIRYLQEFWDII--HQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYFTLEIR 222
Q + ++ + N +
Sbjct: 70 QVRVWKNGGQTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNA 129
Query: 223 SDVVILMH 230
++ IL
Sbjct: 130 AEGGILAV 137
>d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol
(CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId:
562]}
Length = 225
Score = 37.7 bits (86), Expect = 0.002
Identities = 10/84 (11%), Positives = 28/84 (33%), Gaps = 3/84 (3%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMV 164
G R + + PK + +++H + A + P +K ++I + + L
Sbjct: 13 FGRRMQT---ECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANH 69
Query: 165 QEYKINIRYLQEFWDIIHQQICIS 188
+ + + ++
Sbjct: 70 PQITVVDGGDERADSVLAGLKAAG 93
>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 173
Score = 36.9 bits (84), Expect = 0.002
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 389 VYIHSSASVHPTAIVGPNVSIDDGAVIGPGV 419
IH SA V A+V +V +++ + P
Sbjct: 11 PRIHPSAFVDENAVVIGDVVLEEKTSVWPSA 41
Score = 30.7 bits (68), Expect = 0.27
Identities = 6/32 (18%), Positives = 11/32 (34%)
Query: 390 YIHSSASVHPTAIVGPNVSIDDGAVIGPGVRI 421
+HP+A V N + V+ +
Sbjct: 6 INGKKPRIHPSAFVDENAVVIGDVVLEEKTSV 37
Score = 28.4 bits (62), Expect = 1.6
Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 400 TAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNW 452
+ P+ +D+ AV+ V ++E S+ +++ I +
Sbjct: 10 KPRIHPSAFVDENAVVIGDVVLEE-----KTSVWPSAVLRGDIEQIYVGKYSN 57
>d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 228
Score = 36.6 bits (83), Expect = 0.004
Identities = 10/118 (8%), Positives = 31/118 (26%)
Query: 118 KPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRYLQEF 177
K + +AG+P+I + A + + + + + + + +
Sbjct: 20 KNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTDHDEIENVAKQFGAQVHRRSSETSKDSS 79
Query: 178 WDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYFTLEIRSDVVILMHSLYSM 235
+ ++ + +Q+ E D V + +
Sbjct: 80 TSLDAIVEFLNYHNEVDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSVVRRHQF 137
>d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me
synthase domain {Campylobacter jejuni [TaxId: 197]}
Length = 205
Score = 36.1 bits (82), Expect = 0.005
Identities = 9/90 (10%), Positives = 22/90 (24%), Gaps = 8/90 (8%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMV 164
TRF K + P+ + + K+I++ ++
Sbjct: 11 NSTRFNT---KVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSSN-----ITYMKKFT 62
Query: 165 QEYKINIRYLQEFWDIIHQQICISLYWTWY 194
+ Y+ + I +
Sbjct: 63 KNYEFIEGGDTRAESLKKALELIDSEFVMV 92
>d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid
(CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId:
562]}
Length = 245
Score = 36.2 bits (82), Expect = 0.006
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 118 KPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSAD 155
KPL + G PMIQH E +QV + E+ + P +
Sbjct: 19 KPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDPRVE 56
>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus
faecium, VAT(D) [TaxId: 1352]}
Length = 203
Score = 35.6 bits (81), Expect = 0.008
Identities = 11/128 (8%), Positives = 41/128 (32%), Gaps = 9/128 (7%)
Query: 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRI--KESIILQGASIGNHSLVLNSI-VGRNS 447
++ + P + + +G K + ++ ++ + + +G+
Sbjct: 8 MYPIEGNKSVQFIKPILEKLENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFC 67
Query: 448 KVGNWSRVEGTPCDPN------PNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELI 501
+G + + P F + + TI+G+ V + +++
Sbjct: 68 SIGPGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVV 127
Query: 502 VLNSIVLP 509
++ + +
Sbjct: 128 IMPGVKIG 135
>d1vh1a_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid
(CMP-KDO)synthetase {Escherichia coli, KdsB [TaxId:
562]}
Length = 246
Score = 35.4 bits (80), Expect = 0.009
Identities = 14/118 (11%), Positives = 35/118 (29%), Gaps = 3/118 (2%)
Query: 118 KPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRYLQEF 177
KPL + G PMI H +E + + II+ + E + Q
Sbjct: 18 KPLVDINGKPMIVHVLERARES-GAERIIVATDHEDVARAVEAAGG--EVCMTRADHQSG 74
Query: 178 WDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYFTLEIRSDVVILMHSLYSM 235
+ + + + + +++ + + + L +++
Sbjct: 75 TERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNA 132
>d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate
uridyltransferase GlmU, C-terminal domain {Streptococcus
pneumoniae [TaxId: 1313]}
Length = 196
Score = 34.7 bits (78), Expect = 0.017
Identities = 5/44 (11%), Positives = 13/44 (29%)
Query: 393 SSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHS 436
+ + + V I+ + +I +L + S
Sbjct: 7 EATYIDIDVEIASEVQIEANVTLKGQTKIGAETVLTNGTYVVDS 50
Score = 32.0 bits (71), Expect = 0.11
Identities = 6/38 (15%), Positives = 11/38 (28%)
Query: 389 VYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESII 426
YI + + NV++ IG +
Sbjct: 9 TYIDIDVEIASEVQIEANVTLKGQTKIGAETVLTNGTY 46
Score = 29.6 bits (65), Expect = 0.65
Identities = 10/43 (23%), Positives = 15/43 (34%)
Query: 387 GDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQG 429
DV I S + + I V+ G + +S I G
Sbjct: 13 IDVEIASEVQIEANVTLKGQTKIGAETVLTNGTYVVDSTIGAG 55
Score = 26.9 bits (58), Expect = 4.3
Identities = 14/142 (9%), Positives = 35/142 (24%)
Query: 284 GVYLFSLDIFQNIAAVFQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSGKAYVY 343
L + + + V + + + +V
Sbjct: 38 ETVLTNGTYVVDSTIGAGAVITNSMIEESSVADGVIVGPYAHIRPNSSLGAQVHIGNFVE 97
Query: 344 QTSKWWSQLKSAGSAIYANRHYLQLYKTRHPERLQCSSQCKTIGDVYIHSSASVHPTAIV 403
+ AG Y + + + K I ++ V + +
Sbjct: 98 VKGSSIGENTKAGHLTYIGNCEVGSNVNFGAGTITVNYDGKNKYKTVIGNNVFVGSNSTI 157
Query: 404 GPNVSIDDGAVIGPGVRIKESI 425
V + D +++G G I + +
Sbjct: 158 IAPVELGDNSLVGAGSTITKDV 179
>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate
uridyltransferase GlmU, C-terminal domain {Escherichia
coli [TaxId: 562]}
Length = 201
Score = 33.8 bits (76), Expect = 0.026
Identities = 14/120 (11%), Positives = 34/120 (28%), Gaps = 2/120 (1%)
Query: 389 VYIHSSASV--HPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRN 446
V + A T G +V ID +I V + + + + +S++ +
Sbjct: 1 VMLRDPARFDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISP 60
Query: 447 SKVGNWSRVEGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSI 506
V + + + + + + LG G + ++
Sbjct: 61 YTVVEDANLAAACTIGPFARLRPGAELLEGAHVGNFVEMKKARLGKGSKAGHLTYLGDAE 120
Score = 30.0 bits (66), Expect = 0.58
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 387 GDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKES 424
G + + I+ NV++ IG G IK S
Sbjct: 13 GTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNS 50
Score = 26.5 bits (57), Expect = 6.9
Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 9/64 (14%)
Query: 391 IHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVG 450
I V + V++ GA I G + + + ++G ++L ++ + +
Sbjct: 146 IGDDVFVGSDTQLVAPVTVGKGATIAAG-----TTVTR--NVGENALAISRVPQTQKE-- 196
Query: 451 NWSR 454
W R
Sbjct: 197 GWRR 200
>d1vica_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid
(CMP-KDO)synthetase {Haemophilus influenzae [TaxId:
727]}
Length = 255
Score = 32.4 bits (72), Expect = 0.11
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 118 KPLFPVAGLPMIQHHIEACVQVPNLKEIII 147
KPL + G PMIQH E +Q +II
Sbjct: 18 KPLADIKGKPMIQHVFEKALQS-GASRVII 46
>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus
influenzae [TaxId: 727]}
Length = 241
Score = 31.6 bits (71), Expect = 0.18
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 12/58 (20%)
Query: 403 VGPNVSIDDGAVIGPGVRIKESIILQGASIGNHSLVLNSIVGRNSKVGNWSRVEGTPC 460
V V I GA I + + + A IG +S+VLN V ++ G P
Sbjct: 192 VREGVMIGAGAKILGNIEVGK-----YAKIGANSVVLNP-------VPEYATAAGVPA 237
Score = 31.3 bits (70), Expect = 0.23
Identities = 5/42 (11%), Positives = 12/42 (28%)
Query: 384 KTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGVRIKESI 425
+ + A + N+ + A IG + +
Sbjct: 185 SGDRHPKVREGVMIGAGAKILGNIEVGKYAKIGANSVVLNPV 226
>d1eyra_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria
meningitidis [TaxId: 487]}
Length = 225
Score = 30.9 bits (68), Expect = 0.26
Identities = 17/187 (9%), Positives = 44/187 (23%), Gaps = 12/187 (6%)
Query: 118 KPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMVQEYKINIRYLQEF 177
K L + G+ ++ H I A + II+ + + ++
Sbjct: 21 KNLRKMNGISLLGHTINAAISSKCFDRIIVSTDG-----------GLIAEEAKNFGVEVV 69
Query: 178 WDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYFTLEIRSDVVILMHSLYSMAI 237
+ + + T G ++ +Q +
Sbjct: 70 LRPAELASDTASSISGVIHALETIGSNSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGS 129
Query: 238 LVTVMATEATRQQSVYYGCIVRKQQTSEISHYVEKPSTFVST-LVNCGVYLFSLDIFQNI 296
+V+ E +++ +S + N +Y+
Sbjct: 130 VVSACPMEHHPLKTLLQINNGEYAPMRHLSDLEQPRQQLPQAFRPNGAIYINDTASLIAN 189
Query: 297 AAVFQSK 303
F +
Sbjct: 190 NCFFIAP 196
>d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase
BC4754 {Bacillus cereus [TaxId: 1396]}
Length = 172
Score = 28.8 bits (63), Expect = 0.96
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 391 IHSSASVHPTAIVGPNVSIDDGAVIGPG 418
I SSA + + +V + + + I
Sbjct: 15 IASSAFIADYVTITGDVYVGEESSIWFN 42
>d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate
adenylyltransferase small subunit, C-terminal domain
{Potato (Solanum tuberosum) [TaxId: 4113]}
Length = 135
Score = 28.2 bits (62), Expect = 1.4
Identities = 11/72 (15%), Positives = 27/72 (37%), Gaps = 8/72 (11%)
Query: 399 PTAIVGPNVSIDDGAVIGPGVRIKESIILQG-----ASIGNHSLVLNSIVGRNSKVGNWS 453
P+ ++ +V+ +VIG G IK I + I +++ +S++ +
Sbjct: 4 PSKMLDADVT---DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDA 60
Query: 454 RVEGTPCDPNPN 465
+ +
Sbjct: 61 DRKLLAAKGSVP 72
>d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli
[TaxId: 562]}
Length = 182
Score = 27.8 bits (61), Expect = 2.3
Identities = 12/70 (17%), Positives = 26/70 (37%)
Query: 356 GSAIYANRHYLQLYKTRHPERLQCSSQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVI 415
G T + + +S + V I ++ + A++ P V+I D V+
Sbjct: 96 GDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIGDNVVV 155
Query: 416 GPGVRIKESI 425
G + + +
Sbjct: 156 ASGAVVTKDV 165
>d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA
{Escherichia coli [TaxId: 562]}
Length = 188
Score = 27.7 bits (60), Expect = 2.8
Identities = 10/89 (11%), Positives = 21/89 (23%), Gaps = 4/89 (4%)
Query: 105 KGTRFRPLSLDSPKPLFPVAGLPMIQHHIEACVQVPNLKEIIILGYYPSADLQKFVLDMV 164
K R K L + G P+ QH +A + + + + +
Sbjct: 13 KARRMG----GVDKGLLELNGKPLWQHVADALMTQLSHVVVNANRHQEIYQASGLKVIED 68
Query: 165 QEYKINIRYLQEFWDIIHQQICISLYWTW 193
+ + L+
Sbjct: 69 SLADYPGPLAGMLSVMQQEAGEWFLFCPC 97
>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter
jejuni [TaxId: 197]}
Length = 193
Score = 27.6 bits (60), Expect = 3.2
Identities = 20/135 (14%), Positives = 44/135 (32%), Gaps = 5/135 (3%)
Query: 300 FQSKQDEFYNGNYMVNGKDTDFNHIQLEKEIIMPLAGSGKAYVYQTSKWWSQLKSAGSAI 359
+ + + + I + YV +K +
Sbjct: 59 RKKIYQKISENGFKIVNLIHKSALISPSAIVEENAGILIMPYVVINAKAK-----IEKGV 113
Query: 360 YANRHYLQLYKTRHPERLQCSSQCKTIGDVYIHSSASVHPTAIVGPNVSIDDGAVIGPGV 419
N + ++ E S K G+V I + + + V PN+S+ D +++G G
Sbjct: 114 ILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLADDSILGGGA 173
Query: 420 RIKESIILQGASIGN 434
+ ++ +G +G
Sbjct: 174 TLVKNQDEKGVFVGV 188
>d1n7va_ b.126.1.1 (A:) Adsorption protein p2 {Bacteriophage prd1
[TaxId: 10658]}
Length = 555
Score = 27.4 bits (60), Expect = 4.5
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Query: 456 EGTPCDPNPNKAFAKMDNPPLFNSNGKLNPSITILGDGVTVPGELIVLNSIVLPYKELTR 515
EG+PC + + P+ G+L P + + + + G+ LN P +
Sbjct: 272 EGSPCAYEAGIILVRQTSNPMNAVAGRLVPYVEDIAVDIFLTGKFFTLNP---PLRITNN 328
Query: 516 SFKNE 520
F ++
Sbjct: 329 YFADD 333
>d1vcoa2 c.37.1.10 (A:11-282) CTP synthase PyrG, N-terminal domain
{Thermus thermophilus [TaxId: 274]}
Length = 272
Score = 26.7 bits (59), Expect = 6.6
Identities = 15/96 (15%), Positives = 31/96 (32%)
Query: 159 FVLDMVQEYKINIRYLQEFWDIIHQQICISLYWTWYRNTRSTYGIYRNSLHWVQEAVYFT 218
FV E ++I + + F D+ + Y + VQ + T
Sbjct: 60 FVTADGAETDLDIGHYERFLDMDLSRGNNLTTGQVYLSVIQKERRGEYLSQTVQVIPHIT 119
Query: 219 LEIRSDVVILMHSLYSMAILVTVMATEATRQQSVYY 254
EI+ + + + ++V V T + +
Sbjct: 120 DEIKERIRKVAEEQKAEIVVVEVGGTVGDIESLPFL 155
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.415
Gapped
Lambda K H
0.267 0.0597 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,005,100
Number of extensions: 95407
Number of successful extensions: 316
Number of sequences better than 10.0: 1
Number of HSP's gapped: 284
Number of HSP's successfully gapped: 69
Length of query: 523
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 434
Effective length of database: 1,185,626
Effective search space: 514561684
Effective search space used: 514561684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.3 bits)