BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17798
(110 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LVJ|A Chain A, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 1)
pdb|3LVJ|B Chain B, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 1)
pdb|3LVK|A Chain A, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 2)
pdb|3LVL|B Chain B, Crystal Structure Of E.Coli Iscs-Iscu Complex
pdb|3LVM|A Chain A, Crystal Structure Of E.Coli Iscs
pdb|3LVM|B Chain B, Crystal Structure Of E.Coli Iscs
Length = 423
Score = 132 bits (333), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 59/108 (54%), Positives = 83/108 (76%), Gaps = 2/108 (1%)
Query: 1 MLPYLT--NAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIA 58
M+ ++T +GNP SR+H +GW++E+AV+ AR +IA L+ DP+EI+FTSGATES+N+A
Sbjct: 42 MMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLA 101
Query: 59 VKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQGG 106
+KG A FY++K KH+IT++TEHK VLD+CR LE EGF V P + G
Sbjct: 102 IKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNG 149
>pdb|1P3W|B Chain B, X-Ray Crystal Structure Of E. Coli Iscs
pdb|1P3W|A Chain A, X-Ray Crystal Structure Of E. Coli Iscs
Length = 404
Score = 132 bits (333), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 59/108 (54%), Positives = 83/108 (76%), Gaps = 2/108 (1%)
Query: 1 MLPYLT--NAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIA 58
M+ ++T +GNP SR+H +GW++E+AV+ AR +IA L+ DP+EI+FTSGATES+N+A
Sbjct: 23 MMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLA 82
Query: 59 VKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQGG 106
+KG A FY++K KH+IT++TEHK VLD+CR LE EGF V P + G
Sbjct: 83 IKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNG 130
>pdb|4EB5|A Chain A, A. Fulgidus Iscs-Iscu Complex Structure
pdb|4EB5|B Chain B, A. Fulgidus Iscs-Iscu Complex Structure
pdb|4EB7|A Chain A, A. Fulgidus Iscs-Iscu Complex Structure
pdb|4EB7|B Chain B, A. Fulgidus Iscs-Iscu Complex Structure
pdb|4HVK|A Chain A, Crystal Structure And Functional Studies Of An Unusual
L-Cysteine Desulfurase From Archaeoglobus Fulgidus
Length = 382
Score = 94.4 bits (233), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 68/97 (70%), Gaps = 1/97 (1%)
Query: 1 MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
MLPY+T ++GNP S H+YG+++ +AV++AR+++A L+N ++FTSGATE+NN+A+
Sbjct: 20 MLPYMTESFGNPSS-VHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAII 78
Query: 61 GVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97
G A K KH++ + EH V++ + L+ +GF V
Sbjct: 79 GYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEV 115
>pdb|3VAX|A Chain A, Crytal Structure Of Dnda From Streptomyces Lividans
pdb|3VAX|B Chain B, Crytal Structure Of Dnda From Streptomyces Lividans
Length = 400
Score = 91.3 bits (225), Expect = 1e-19, Method: Composition-based stats.
Identities = 47/107 (43%), Positives = 70/107 (65%), Gaps = 2/107 (1%)
Query: 1 MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
+L ++T +GN SR H YG +++ VE AR+ +A+ ++ +P E+IFTSGATESNNIA+
Sbjct: 40 VLHWMTAEFGNAGSR-HEYGIRAKRGVERAREYLASTVSAEPDELIFTSGATESNNIALL 98
Query: 61 GVARF-YKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQGG 106
G+A + + ++H+IT+ EHK VL+ L G GF V PG G
Sbjct: 99 GLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGPSG 145
>pdb|1ECX|A Chain A, Nifs-Like Protein
pdb|1ECX|B Chain B, Nifs-Like Protein
Length = 384
Score = 78.6 bits (192), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 61/97 (62%), Gaps = 1/97 (1%)
Query: 1 MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
M+ + YGNP+S H G E+ +E AR+++A ++ P EI FTS ATES N +K
Sbjct: 21 MIVFYREKYGNPNS-AHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILK 79
Query: 61 GVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97
VA ++++K+ +ITT EHK VL++ + L +GF V
Sbjct: 80 TVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKV 116
>pdb|1EG5|A Chain A, Nifs-like Protein
pdb|1EG5|B Chain B, Nifs-like Protein
Length = 384
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Query: 9 YGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKE 68
YGNP+S H G E+ E AR+++A ++ P EI FTS ATES N +K VA +++
Sbjct: 29 YGNPNS-AHGXGIEANLHXEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVAETFEK 87
Query: 69 KKKHVITTQTEHKCVLDSCRILEGEGFNV 97
+K+ +ITT EHK VL++ + L +GF V
Sbjct: 88 RKRTIITTPIEHKAVLETXKYLSXKGFKV 116
>pdb|3GZD|A Chain A, Human Selenocysteine Lyase, P1 Crystal Form
pdb|3GZD|B Chain B, Human Selenocysteine Lyase, P1 Crystal Form
pdb|3GZD|D Chain D, Human Selenocysteine Lyase, P1 Crystal Form
Length = 440
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 22/106 (20%)
Query: 1 MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
M + A+GNP S ++ G +++ + AR+ +A +I P++IIFTSG TESNN+ +
Sbjct: 45 MTKAMWEAWGNP-SSPYSAGRKAKDIINAARESLAKMIGGKPQDIIFTSGGTESNNLVIH 103
Query: 61 GVARFY-----------------KEKKKHVITTQTEHKCVLDSCRI 89
V + + K K H IT+ EH DS R+
Sbjct: 104 SVVKHFHANQTSKGHTGGHHSPVKGAKPHFITSSVEH----DSIRL 145
>pdb|3GZC|A Chain A, Structure Of Human Selenocysteine Lyase
pdb|3GZC|B Chain B, Structure Of Human Selenocysteine Lyase
pdb|3GZD|C Chain C, Human Selenocysteine Lyase, P1 Crystal Form
Length = 440
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 22/106 (20%)
Query: 1 MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
M + A+GNP S ++ G +++ + AR+ +A +I P++IIFTSG TESNN+ +
Sbjct: 45 MTKAMWEAWGNP-SSPYSAGRKAKDIINAARESLAKMIGGKPQDIIFTSGGTESNNLVIH 103
Query: 61 GVARFY-----------------KEKKKHVITTQTEHKCVLDSCRI 89
V + + K K H IT+ EH DS R+
Sbjct: 104 SVVKHFHANQTSKGHTGGHHSPVKGAKPHFITSSVEH----DSIRL 145
>pdb|3A9X|A Chain A, Crystal Structure Of Rat Selenocysteine Lyase
pdb|3A9X|B Chain B, Crystal Structure Of Rat Selenocysteine Lyase
pdb|3A9Y|A Chain A, Crystal Structure Of Rat Selenocysteine Lyase In Complex
With L-Cysteine
pdb|3A9Y|B Chain B, Crystal Structure Of Rat Selenocysteine Lyase In Complex
With L-Cysteine
pdb|3A9Z|A Chain A, Crystal Structure Of Ras Selenocysteine Lyase In Complex
With Selenopropionate
pdb|3A9Z|B Chain B, Crystal Structure Of Ras Selenocysteine Lyase In Complex
With Selenopropionate
Length = 432
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 22/102 (21%)
Query: 5 LTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVAR 64
+ A+GNP S ++ G +++ + AR +A +I P++IIFTSG TESNN+ + R
Sbjct: 42 MKEAWGNPSS-SYVAGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTESNNLVIHSTVR 100
Query: 65 FYKEK-----------------KKHVITTQTEHKCVLDSCRI 89
+ E+ + H IT EH DS R+
Sbjct: 101 CFHEQQTLQGRTVDQISPEEGTRPHFITCTVEH----DSIRL 138
>pdb|1T3I|A Chain A, Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE
Desulfurase From Synechocystis Pcc 6803
pdb|1T3I|B Chain B, Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE
Desulfurase From Synechocystis Pcc 6803
Length = 420
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 1/99 (1%)
Query: 1 MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINC-DPKEIIFTSGATESNNIAV 59
++ Y N N H H + A E R ++A IN P+EI++T ATE+ N+
Sbjct: 48 LMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVA 107
Query: 60 KGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL 98
+ +ITT EH L +++ + VL
Sbjct: 108 YSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVL 146
>pdb|1C0N|A Chain A, Csdb Protein, Nifs Homologue
Length = 406
Score = 33.9 bits (76), Expect = 0.024, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 4 YLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINC-DPKEIIFTSGATESNNIAVKGV 62
+ + Y H+ H ++ + +E+ R+ + IN +E++F G TE N+
Sbjct: 46 FYRHGYAAVHAGAHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSW 105
Query: 63 ARFYKEKKKHVITTQTEH 80
++I +Q EH
Sbjct: 106 GNSNVRAGDNIIISQMEH 123
>pdb|1JF9|A Chain A, Crystal Structure Of Selenocysteine Lyase
Length = 408
Score = 33.1 bits (74), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 4/103 (3%)
Query: 4 YLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINC-DPKEIIFTSGATESNNIAVKGV 62
+ + Y H H ++ + +E+ R+ + IN +E++F G TE N+
Sbjct: 48 FYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSW 107
Query: 63 ARFYKEKKKHVITTQTEHKCVLDSCRIL---EGEGFNVLGSNP 102
++I +Q EH + ++L G V+ NP
Sbjct: 108 GNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNP 150
>pdb|1KMJ|A Chain A, E. Coli NifsCSDB PROTEIN AT 2.0A WITH THE CYSTEINE
PERSULFIDE Intermediate (Residue Css).
pdb|1KMK|A Chain A, E. Coli NifsCSDB PROTEIN AT 2.20A WITH THE CYSTEINE
PERSELENIDE Intermediate (Residue Csz)
Length = 406
Score = 33.1 bits (74), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 4/103 (3%)
Query: 4 YLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINC-DPKEIIFTSGATESNNIAVKGV 62
+ + Y H H ++ + +E+ R+ + IN +E++F G TE N+
Sbjct: 46 FYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSW 105
Query: 63 ARFYKEKKKHVITTQTEHKCVLDSCRIL---EGEGFNVLGSNP 102
++I +Q EH + ++L G V+ NP
Sbjct: 106 GNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNP 148
>pdb|1I29|A Chain A, Crystal Structure Of Csdb Complexed With
L-Propargylglycine
Length = 406
Score = 32.7 bits (73), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 4/103 (3%)
Query: 4 YLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINC-DPKEIIFTSGATESNNIAVKGV 62
+ + Y H H ++ + +E+ R+ + IN +E++F G TE N+
Sbjct: 46 FYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSW 105
Query: 63 ARFYKEKKKHVITTQTEHKCVLDSCRIL---EGEGFNVLGSNP 102
++I +Q EH + ++L G V+ NP
Sbjct: 106 GNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNP 148
>pdb|4IXO|A Chain A, X-ray Structure Of Nifs-like Protein From Rickettsia
Africae Esf-5
pdb|4IXO|B Chain B, X-ray Structure Of Nifs-like Protein From Rickettsia
Africae Esf-5
Length = 380
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Query: 11 NPHSRTHAYGWESEKAVEDARQEIATL--INCDPKE--IIFTSGATESNNIAVKGVARFY 66
NP S H+ G ++ +E R +IAT I +E I FTS TE NN+ +K FY
Sbjct: 37 NP-SSAHSSGRFAKNLIETVRAQIATALGITLSSREYDITFTSSGTEGNNLIMK---NFY 92
>pdb|2Q8N|A Chain A, Crystal Structure Of Glucose-6-Phosphate Isomerase (Ec
5.3.1.9) (Tm1385) From Thermotoga Maritima At 1.82 A
Resolution
pdb|2Q8N|B Chain B, Crystal Structure Of Glucose-6-Phosphate Isomerase (Ec
5.3.1.9) (Tm1385) From Thermotoga Maritima At 1.82 A
Resolution
pdb|2Q8N|C Chain C, Crystal Structure Of Glucose-6-Phosphate Isomerase (Ec
5.3.1.9) (Tm1385) From Thermotoga Maritima At 1.82 A
Resolution
Length = 460
Score = 28.9 bits (63), Expect = 0.86, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 14/109 (12%)
Query: 11 NPHSRTHAYGWESEKAVEDARQEI--ATLINCDPKEIIFT----SGATESNNIAVKGVAR 64
N +R G+ V++ ++ + L DPK +F SG+T + +A +AR
Sbjct: 106 NEMTREERNGYARVFVVDNVDPDLMSSVLDRIDPKTTLFNVISKSGST-AEVMATYSIAR 164
Query: 65 -----FYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQGGNF 108
+ + ++H++ T K L ++++ EGF L PG GG F
Sbjct: 165 GILEAYGLDPREHMLITTDPEKGFLR--KLVKEEGFRSLEVPPGVGGRF 211
>pdb|1F0X|A Chain A, Crystal Structure Of D-Lactate Dehydrogenase, A Peripheral
Membrane Respiratory Enzyme.
pdb|1F0X|B Chain B, Crystal Structure Of D-Lactate Dehydrogenase, A Peripheral
Membrane Respiratory Enzyme
Length = 571
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 27/76 (35%)
Query: 13 HSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKH 72
H HA+ ++ V D + N DP + +SG + + F EK +
Sbjct: 218 HDGRHAHDYDYVHRVRDIEADTPARYNADPDRLFESSGCAGKLAVFAVRLDTFEAEKNQQ 277
Query: 73 VITTQTEHKCVLDSCR 88
V T VL R
Sbjct: 278 VFYIGTNQPEVLTEIR 293
>pdb|4GVW|A Chain A, Three-Dimensional Structure Of The De Novo Designed Serine
Hydrolase 2bfq_3, Northeast Structural Genomics
Consortium (Nesg) Target Or248
Length = 199
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 24/53 (45%)
Query: 12 PHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVAR 64
P YG ++EK VE + + + KE+ GA +S +A+K R
Sbjct: 138 PAVSAGIYGCDAEKVVETSLEAVKNFKGSAVKEVAEVHGARKSAEVALKVFER 190
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,576,554
Number of Sequences: 62578
Number of extensions: 125121
Number of successful extensions: 233
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 214
Number of HSP's gapped (non-prelim): 26
length of query: 110
length of database: 14,973,337
effective HSP length: 74
effective length of query: 36
effective length of database: 10,342,565
effective search space: 372332340
effective search space used: 372332340
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)