Query psy17798
Match_columns 110
No_of_seqs 179 out of 1297
Neff 9.0
Searched_HMMs 46136
Date Fri Aug 16 23:21:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17798.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17798hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1104 NifS Cysteine sulfinat 99.9 1E-25 2.2E-30 162.1 11.9 108 1-109 21-130 (386)
2 COG0520 csdA Selenocysteine ly 99.9 2.9E-23 6.2E-28 151.9 12.6 107 2-109 43-151 (405)
3 KOG1549|consensus 99.9 1.2E-22 2.7E-27 147.1 10.4 107 1-109 63-170 (428)
4 PRK09295 bifunctional cysteine 99.8 4E-18 8.6E-23 124.4 12.6 108 2-109 44-153 (406)
5 PLN02651 cysteine desulfurase 99.8 9.5E-18 2.1E-22 120.9 13.0 108 2-109 20-127 (364)
6 PRK10874 cysteine sulfinate de 99.8 8.2E-18 1.8E-22 122.4 12.7 108 2-109 40-149 (401)
7 TIGR03392 FeS_syn_CsdA cystein 99.7 3.6E-17 7.7E-22 119.0 12.7 108 2-109 37-146 (398)
8 PRK02948 cysteine desulfurase; 99.7 5.9E-17 1.3E-21 117.2 13.1 107 2-109 21-127 (381)
9 TIGR02006 IscS cysteine desulf 99.7 5.5E-17 1.2E-21 118.4 13.0 108 2-109 24-131 (402)
10 PLN02724 Molybdenum cofactor s 99.7 1.9E-17 4E-22 129.9 10.8 97 3-103 57-155 (805)
11 TIGR03402 FeS_nifS cysteine de 99.7 1.3E-16 2.9E-21 115.3 13.0 106 2-109 20-125 (379)
12 PLN02855 Bifunctional selenocy 99.7 1.8E-16 3.9E-21 116.3 13.0 108 2-109 53-162 (424)
13 PRK14012 cysteine desulfurase; 99.7 1.9E-16 4.2E-21 115.6 12.8 107 3-109 25-133 (404)
14 TIGR01979 sufS cysteine desulf 99.7 2.2E-16 4.7E-21 114.9 12.9 107 3-109 40-148 (403)
15 PF00266 Aminotran_5: Aminotra 99.7 8.5E-17 1.8E-21 116.1 10.4 107 2-109 20-128 (371)
16 TIGR03403 nifS_epsilon cystein 99.7 2.7E-16 5.8E-21 113.9 12.7 107 2-109 20-129 (382)
17 TIGR03235 DNA_S_dndA cysteine 99.7 3.2E-16 7E-21 112.4 12.8 108 2-109 19-127 (353)
18 cd06453 SufS_like Cysteine des 99.7 2.7E-15 5.8E-20 108.1 12.4 106 3-109 21-128 (373)
19 PLN03032 serine decarboxylase; 99.6 9.1E-16 2E-20 111.5 8.9 103 1-109 43-147 (374)
20 TIGR01977 am_tr_V_EF2568 cyste 99.5 5.4E-13 1.2E-17 96.1 12.4 102 4-109 23-126 (376)
21 PRK02769 histidine decarboxyla 99.5 1.2E-13 2.5E-18 100.8 8.6 101 3-109 44-146 (380)
22 TIGR01976 am_tr_V_VC1184 cyste 99.5 7.2E-13 1.6E-17 96.3 12.6 105 3-109 39-145 (397)
23 PTZ00094 serine hydroxymethylt 99.4 7E-13 1.5E-17 98.5 7.2 102 3-109 56-170 (452)
24 COG1167 ARO8 Transcriptional r 99.4 5.4E-13 1.2E-17 99.4 6.0 82 20-108 127-214 (459)
25 cd00611 PSAT_like Phosphoserin 99.4 2.4E-12 5.3E-17 92.9 7.0 99 2-106 19-122 (355)
26 TIGR01788 Glu-decarb-GAD gluta 99.3 1.9E-11 4.2E-16 90.5 9.5 100 2-109 62-175 (431)
27 PRK05387 histidinol-phosphate 99.3 1.8E-11 3.8E-16 87.8 8.5 76 27-109 62-137 (353)
28 PRK09331 Sep-tRNA:Cys-tRNA syn 99.3 5.1E-11 1.1E-15 86.8 10.1 97 3-109 42-140 (387)
29 TIGR01814 kynureninase kynuren 99.3 1.2E-11 2.7E-16 90.5 6.2 76 28-108 73-156 (406)
30 cd06452 SepCysS Sep-tRNA:Cys-t 99.2 6.6E-11 1.4E-15 85.3 9.3 90 8-106 27-116 (361)
31 PRK09105 putative aminotransfe 99.2 7.7E-11 1.7E-15 85.5 9.3 76 27-109 80-155 (370)
32 PRK04635 histidinol-phosphate 99.2 8.5E-11 1.8E-15 84.6 9.0 75 27-108 62-137 (354)
33 PRK14807 histidinol-phosphate 99.2 9.5E-11 2.1E-15 84.3 8.9 76 27-109 61-136 (351)
34 PRK05166 histidinol-phosphate 99.2 1.1E-10 2.3E-15 84.6 8.1 75 28-109 74-148 (371)
35 TIGR01141 hisC histidinol-phos 99.2 2E-10 4.4E-15 82.1 8.9 75 28-109 57-131 (346)
36 PRK01533 histidinol-phosphate 99.2 2.2E-10 4.8E-15 83.1 9.1 74 26-106 65-138 (366)
37 PLN03026 histidinol-phosphate 99.1 4.2E-10 9E-15 81.9 9.5 75 27-108 88-162 (380)
38 PLN02414 glycine dehydrogenase 99.1 4.1E-10 8.8E-15 90.1 9.8 80 22-109 565-652 (993)
39 PRK08960 hypothetical protein; 99.1 1.9E-10 4.1E-15 83.7 7.1 75 25-106 69-149 (387)
40 PRK07908 hypothetical protein; 99.1 3.1E-10 6.7E-15 81.5 7.5 74 25-108 58-131 (349)
41 PRK13520 L-tyrosine decarboxyl 99.1 1.7E-09 3.6E-14 77.8 11.1 99 3-109 42-140 (371)
42 PRK01688 histidinol-phosphate 99.1 7.1E-10 1.5E-14 79.9 8.7 75 27-108 59-134 (351)
43 PRK03158 histidinol-phosphate 99.1 8E-10 1.7E-14 79.5 8.7 72 26-104 65-136 (359)
44 PRK00451 glycine dehydrogenase 99.1 2.3E-09 5E-14 79.3 11.2 81 22-105 109-190 (447)
45 PRK08153 histidinol-phosphate 99.1 8.5E-10 1.8E-14 80.0 8.4 73 27-106 69-141 (369)
46 PRK13355 bifunctional HTH-doma 99.1 7E-10 1.5E-14 83.7 8.3 75 24-105 184-264 (517)
47 cd06450 DOPA_deC_like DOPA dec 99.1 2.3E-09 5E-14 76.4 10.5 97 10-109 23-131 (345)
48 PRK03321 putative aminotransfe 99.1 1E-09 2.3E-14 78.7 8.5 76 26-108 58-133 (352)
49 PRK07681 aspartate aminotransf 99.0 8.5E-10 1.8E-14 80.6 7.7 75 25-106 69-150 (399)
50 cd01494 AAT_I Aspartate aminot 99.0 2.2E-09 4.7E-14 68.7 8.7 75 27-107 2-76 (170)
51 TIGR03812 tyr_de_CO2_Arch tyro 99.0 2.9E-09 6.3E-14 76.7 10.3 98 4-109 43-142 (373)
52 cd06451 AGAT_like Alanine-glyo 99.0 3.2E-09 6.9E-14 76.1 10.4 83 22-109 29-112 (356)
53 PRK04870 histidinol-phosphate 99.0 2E-09 4.3E-14 77.4 9.4 77 26-109 64-141 (356)
54 PRK02731 histidinol-phosphate 99.0 1.5E-09 3.2E-14 78.3 8.4 71 28-105 70-140 (367)
55 PRK14809 histidinol-phosphate 99.0 2E-09 4.3E-14 77.5 8.7 72 26-104 66-137 (357)
56 PRK06225 aspartate aminotransf 99.0 2.4E-09 5.1E-14 77.7 9.1 72 25-103 66-137 (380)
57 PRK07324 transaminase; Validat 99.0 1.1E-09 2.4E-14 79.5 6.9 74 25-105 62-136 (373)
58 PRK07366 succinyldiaminopimela 99.0 9.6E-10 2.1E-14 80.0 6.5 75 25-106 68-149 (388)
59 PRK06836 aspartate aminotransf 99.0 2.4E-09 5.2E-14 78.2 8.6 74 25-105 73-152 (394)
60 PRK00950 histidinol-phosphate 99.0 3E-09 6.4E-14 76.5 8.8 75 27-108 71-146 (361)
61 PRK03967 histidinol-phosphate 99.0 3.2E-09 7E-14 76.1 8.9 74 26-108 56-129 (337)
62 PRK09265 aminotransferase AlaT 99.0 3E-09 6.5E-14 77.9 8.8 74 25-105 72-151 (404)
63 PRK07392 threonine-phosphate d 99.0 1.8E-09 3.9E-14 77.9 7.6 73 27-107 59-131 (360)
64 TIGR02326 transamin_PhnW 2-ami 99.0 4.9E-09 1.1E-13 75.5 9.7 82 22-109 32-116 (363)
65 PLN02376 1-aminocyclopropane-1 99.0 2.2E-09 4.7E-14 80.9 8.0 75 24-104 93-175 (496)
66 PRK05957 aspartate aminotransf 99.0 4.1E-09 8.8E-14 76.9 9.0 79 24-109 68-149 (389)
67 PRK04781 histidinol-phosphate 99.0 4.2E-09 9.1E-14 76.3 8.9 70 27-103 61-131 (364)
68 PRK07337 aminotransferase; Val 99.0 3.5E-09 7.6E-14 77.0 8.5 73 25-104 67-145 (388)
69 PRK08361 aspartate aminotransf 99.0 3.2E-09 6.9E-14 77.4 8.2 75 25-106 70-150 (391)
70 PLN02187 rooty/superroot1 99.0 4.9E-09 1.1E-13 78.3 9.3 72 25-103 108-185 (462)
71 PTZ00377 alanine aminotransfer 99.0 1.4E-09 3E-14 81.4 6.3 79 21-105 111-195 (481)
72 PTZ00433 tyrosine aminotransfe 99.0 2.7E-09 5.9E-14 78.3 7.7 73 25-104 75-159 (412)
73 PRK03317 histidinol-phosphate 99.0 4E-09 8.7E-14 76.2 8.3 73 26-105 66-144 (368)
74 PRK09148 aminotransferase; Val 99.0 4.4E-09 9.4E-14 77.2 8.6 75 25-106 68-149 (405)
75 cd00378 SHMT Serine-glycine hy 98.9 2.2E-09 4.8E-14 78.2 6.5 89 10-104 50-141 (402)
76 PLN02409 serine--glyoxylate am 98.9 1.3E-08 2.7E-13 74.7 10.5 82 20-106 37-119 (401)
77 PRK15481 transcriptional regul 98.9 4.6E-09 9.9E-14 77.5 7.9 75 26-107 122-199 (431)
78 PRK00011 glyA serine hydroxyme 98.9 2.5E-09 5.5E-14 78.4 6.4 94 10-109 56-153 (416)
79 PRK07683 aminotransferase A; V 98.9 8.2E-09 1.8E-13 75.2 8.9 76 25-107 65-147 (387)
80 PLN02450 1-aminocyclopropane-1 98.9 4.8E-09 1E-13 78.5 7.6 76 25-106 86-170 (468)
81 PRK05942 aspartate aminotransf 98.9 5.7E-09 1.2E-13 76.2 7.8 74 25-105 73-153 (394)
82 COG0436 Aspartate/tyrosine/aro 98.9 5.6E-09 1.2E-13 76.6 7.6 74 24-104 64-144 (393)
83 PRK06108 aspartate aminotransf 98.9 7.5E-09 1.6E-13 74.8 8.0 73 25-104 61-139 (382)
84 PLN02656 tyrosine transaminase 98.9 7.3E-09 1.6E-13 76.1 8.0 73 25-104 73-151 (409)
85 PRK08912 hypothetical protein; 98.9 9.5E-09 2.1E-13 74.7 8.5 73 25-104 63-142 (387)
86 PRK06290 aspartate aminotransf 98.9 1E-08 2.2E-13 75.5 8.7 75 25-106 81-163 (410)
87 PRK07568 aspartate aminotransf 98.9 1E-08 2.2E-13 74.7 8.5 76 25-107 66-147 (397)
88 TIGR01265 tyr_nico_aTase tyros 98.9 1E-08 2.2E-13 75.1 8.1 73 25-104 73-151 (403)
89 PRK08363 alanine aminotransfer 98.9 1.2E-08 2.6E-13 74.5 8.5 75 25-106 70-151 (398)
90 PLN00175 aminotransferase fami 98.9 1.3E-08 2.8E-13 75.0 8.5 74 25-105 91-171 (413)
91 PLN02607 1-aminocyclopropane-1 98.9 6.8E-09 1.5E-13 77.3 7.1 76 24-105 94-177 (447)
92 TIGR03537 DapC succinyldiamino 98.9 1.7E-08 3.6E-13 72.6 8.9 76 25-107 36-122 (350)
93 PRK07550 hypothetical protein; 98.9 1.5E-08 3.3E-13 73.6 8.8 73 25-104 67-145 (386)
94 PRK08175 aminotransferase; Val 98.9 1.2E-08 2.6E-13 74.5 8.2 74 26-106 68-148 (395)
95 PRK09276 LL-diaminopimelate am 98.9 1.6E-08 3.5E-13 73.4 8.7 75 26-107 70-152 (385)
96 PRK02610 histidinol-phosphate 98.9 1.4E-08 3E-13 73.7 8.2 73 26-105 67-148 (374)
97 TIGR03540 DapC_direct LL-diami 98.9 1.3E-08 2.8E-13 73.9 7.9 74 25-105 67-147 (383)
98 PRK06348 aspartate aminotransf 98.9 1.7E-08 3.6E-13 73.5 8.5 71 26-103 67-143 (384)
99 PRK08636 aspartate aminotransf 98.8 4.5E-09 9.9E-14 76.9 5.2 73 24-103 70-149 (403)
100 PRK05764 aspartate aminotransf 98.8 2E-08 4.3E-13 73.0 8.5 73 26-105 69-147 (393)
101 PRK11658 UDP-4-amino-4-deoxy-L 98.8 3.5E-08 7.6E-13 72.0 9.6 74 25-106 33-106 (379)
102 PLN00145 tyrosine/nicotianamin 98.8 1.6E-08 3.5E-13 74.9 7.9 72 25-103 94-171 (430)
103 PRK08134 O-acetylhomoserine am 98.8 2.6E-08 5.7E-13 74.0 8.9 81 17-103 56-137 (433)
104 TIGR01264 tyr_amTase_E tyrosin 98.8 1.4E-08 2.9E-13 74.3 7.3 73 25-104 73-150 (401)
105 PRK14808 histidinol-phosphate 98.8 3E-08 6.5E-13 71.1 8.9 73 26-109 57-132 (335)
106 PRK06207 aspartate aminotransf 98.8 4.1E-08 8.9E-13 72.1 9.5 72 25-103 78-156 (405)
107 PRK08068 transaminase; Reviewe 98.8 2.6E-08 5.6E-13 72.6 8.4 74 25-105 70-150 (389)
108 PLN02368 alanine transaminase 98.8 1.7E-08 3.7E-13 74.4 7.5 76 24-105 106-187 (407)
109 cd00613 GDC-P Glycine cleavage 98.8 7.2E-08 1.6E-12 70.1 10.4 83 23-108 62-147 (398)
110 PRK08637 hypothetical protein; 98.8 1.5E-08 3.2E-13 73.9 6.7 79 19-103 38-124 (388)
111 TIGR03538 DapC_gpp succinyldia 98.8 2.7E-08 5.8E-13 72.6 7.9 74 25-105 64-148 (393)
112 PLN00143 tyrosine/nicotianamin 98.8 2.7E-08 5.8E-13 73.2 7.9 72 25-103 74-151 (409)
113 PRK08056 threonine-phosphate d 98.8 3.1E-08 6.8E-13 71.4 8.0 70 26-104 56-125 (356)
114 PRK06358 threonine-phosphate d 98.8 2.6E-08 5.6E-13 71.9 7.5 71 26-105 55-125 (354)
115 PLN02231 alanine transaminase 98.8 1.9E-08 4.2E-13 76.4 7.1 79 21-105 164-248 (534)
116 PRK06425 histidinol-phosphate 98.8 3.1E-08 6.8E-13 70.8 7.7 72 26-106 41-112 (332)
117 PRK07682 hypothetical protein; 98.8 5.2E-08 1.1E-12 70.6 8.9 73 25-104 57-136 (378)
118 cd00616 AHBA_syn 3-amino-5-hyd 98.8 8.6E-08 1.9E-12 68.4 9.9 76 25-108 18-94 (352)
119 PRK13479 2-aminoethylphosphona 98.8 9.7E-08 2.1E-12 68.9 10.2 81 24-109 36-118 (368)
120 PRK05839 hypothetical protein; 98.8 5.5E-08 1.2E-12 70.7 8.6 76 25-105 60-141 (374)
121 PLN02414 glycine dehydrogenase 98.8 8.6E-08 1.9E-12 77.1 10.3 81 21-104 144-227 (993)
122 TIGR02379 ECA_wecE TDP-4-keto- 98.8 1.2E-07 2.6E-12 69.2 10.1 73 26-106 32-104 (376)
123 PRK03080 phosphoserine aminotr 98.8 9.2E-08 2E-12 69.7 9.3 80 22-108 45-129 (378)
124 TIGR03539 DapC_actino succinyl 98.8 6.1E-08 1.3E-12 69.9 8.4 70 26-101 57-133 (357)
125 cd00609 AAT_like Aspartate ami 98.8 4.5E-08 9.8E-13 69.2 7.5 78 24-108 35-118 (350)
126 PRK07590 L,L-diaminopimelate a 98.7 3.1E-08 6.8E-13 72.7 6.7 74 24-105 75-165 (409)
127 PRK07309 aromatic amino acid a 98.7 5.9E-08 1.3E-12 70.8 8.0 74 26-106 68-148 (391)
128 TIGR01822 2am3keto_CoA 2-amino 98.7 5.9E-08 1.3E-12 70.5 8.0 77 4-89 64-141 (393)
129 PRK09147 succinyldiaminopimela 98.7 8.8E-08 1.9E-12 69.9 8.9 73 26-105 66-149 (396)
130 PRK08133 O-succinylhomoserine 98.7 8.6E-08 1.9E-12 70.3 8.7 77 21-103 57-134 (390)
131 TIGR03301 PhnW-AepZ 2-aminoeth 98.7 1.7E-07 3.6E-12 66.9 9.9 81 23-109 29-112 (355)
132 cd06502 TA_like Low-specificit 98.7 4.8E-08 1E-12 69.4 7.0 74 25-104 32-105 (338)
133 PRK09257 aromatic amino acid a 98.7 1.7E-08 3.7E-13 73.7 4.8 77 21-102 65-149 (396)
134 PRK12414 putative aminotransfe 98.7 1.1E-07 2.3E-12 69.3 8.8 74 26-106 67-147 (384)
135 cd00615 Orn_deC_like Ornithine 98.7 1.8E-07 4E-12 66.0 9.5 72 25-104 59-130 (294)
136 PRK06460 hypothetical protein; 98.7 5.2E-08 1.1E-12 71.1 7.0 93 8-106 28-121 (376)
137 PRK06855 aminotransferase; Val 98.7 3E-08 6.6E-13 73.4 5.7 74 24-104 72-151 (433)
138 TIGR03588 PseC UDP-4-keto-6-de 98.7 2.2E-07 4.8E-12 67.6 9.9 71 26-104 30-100 (380)
139 PRK07865 N-succinyldiaminopime 98.7 1.1E-07 2.4E-12 68.7 8.2 71 25-101 62-139 (364)
140 TIGR03542 DAPAT_plant LL-diami 98.7 8.8E-08 1.9E-12 70.1 7.7 73 25-105 75-161 (402)
141 TIGR01364 serC_1 phosphoserine 98.7 1.5E-07 3.2E-12 68.2 8.4 93 3-103 13-111 (349)
142 PRK07050 cystathionine beta-ly 98.7 1.4E-07 3.1E-12 69.2 8.5 80 18-103 58-138 (394)
143 PRK11706 TDP-4-oxo-6-deoxy-D-g 98.6 4.7E-07 1E-11 65.9 10.2 73 26-106 32-104 (375)
144 TIGR02539 SepCysS Sep-tRNA:Cys 98.6 4.8E-07 1E-11 65.7 10.3 72 24-104 50-121 (370)
145 PRK07777 aminotransferase; Val 98.6 3.8E-07 8.2E-12 66.4 9.5 74 25-105 61-141 (387)
146 PRK05367 glycine dehydrogenase 98.6 4.4E-07 9.5E-12 73.0 10.2 80 22-104 118-200 (954)
147 PRK09082 methionine aminotrans 98.6 4.1E-07 8.9E-12 66.3 9.2 73 26-105 68-147 (386)
148 PLN02994 1-aminocyclopropane-1 98.6 8E-08 1.7E-12 62.2 4.7 53 25-81 92-152 (153)
149 PRK05664 threonine-phosphate d 98.6 3.5E-07 7.5E-12 65.5 8.0 66 28-104 52-117 (330)
150 PLN02721 threonine aldolase 98.6 2.7E-07 5.9E-12 65.9 7.4 78 26-109 41-119 (353)
151 COG0079 HisC Histidinol-phosph 98.6 7.8E-07 1.7E-11 64.7 9.6 71 27-104 59-130 (356)
152 PRK05613 O-acetylhomoserine am 98.6 4E-07 8.7E-12 67.8 7.9 79 17-101 61-140 (437)
153 PRK06107 aspartate aminotransf 98.5 6.6E-07 1.4E-11 65.6 8.4 72 26-104 71-148 (402)
154 TIGR03576 pyridox_MJ0158 pyrid 98.5 9.7E-07 2.1E-11 63.9 9.1 67 25-98 54-123 (346)
155 PRK15407 lipopolysaccharide bi 98.5 1.2E-06 2.5E-11 65.3 9.7 74 26-104 64-142 (438)
156 TIGR01140 L_thr_O3P_dcar L-thr 98.5 8.2E-07 1.8E-11 63.5 8.5 66 27-101 49-114 (330)
157 KOG0259|consensus 98.5 3.4E-07 7.3E-12 66.6 6.2 76 21-103 99-180 (447)
158 PRK08861 cystathionine gamma-s 98.5 7.6E-07 1.7E-11 65.4 8.2 79 18-102 46-125 (388)
159 TIGR01329 cysta_beta_ly_E cyst 98.5 1.1E-06 2.4E-11 64.2 8.9 74 23-103 45-119 (378)
160 PRK08249 cystathionine gamma-s 98.5 1.4E-06 3E-11 64.2 9.3 80 17-102 56-136 (398)
161 PLN02263 serine decarboxylase 98.5 2.4E-06 5.3E-11 64.1 10.7 97 7-109 116-214 (470)
162 PF01041 DegT_DnrJ_EryC1: DegT 98.5 1.6E-06 3.4E-11 62.9 9.4 77 25-109 25-102 (363)
163 PRK06959 putative threonine-ph 98.5 9.7E-07 2.1E-11 63.5 8.1 68 28-104 56-124 (339)
164 cd06454 KBL_like KBL_like; thi 98.5 7.1E-07 1.5E-11 63.6 7.4 71 23-102 44-114 (349)
165 PRK09028 cystathionine beta-ly 98.5 2.6E-06 5.7E-11 62.7 10.2 74 24-103 60-134 (394)
166 PRK08574 cystathionine gamma-s 98.5 2.4E-06 5.1E-11 62.7 9.9 79 19-103 47-125 (385)
167 TIGR02080 O_succ_thio_ly O-suc 98.5 1.2E-06 2.5E-11 64.2 8.3 79 18-102 44-123 (382)
168 PF00155 Aminotran_1_2: Aminot 98.5 7.9E-07 1.7E-11 63.8 7.2 73 24-103 43-123 (363)
169 TIGR01325 O_suc_HS_sulf O-succ 98.4 1.4E-06 3E-11 63.7 8.3 78 20-103 49-127 (380)
170 PRK07582 cystathionine gamma-l 98.4 2.4E-06 5.3E-11 62.2 9.3 80 19-105 45-125 (366)
171 PRK08064 cystathionine beta-ly 98.4 1.4E-06 3E-11 63.9 8.0 80 17-103 46-126 (390)
172 PTZ00376 aspartate aminotransf 98.4 3.5E-07 7.7E-12 67.1 4.8 79 21-103 68-154 (404)
173 cd00614 CGS_like CGS_like: Cys 98.4 2.6E-06 5.5E-11 62.0 9.2 81 17-103 32-113 (369)
174 PRK07503 methionine gamma-lyas 98.4 1.9E-06 4.1E-11 63.5 8.5 81 17-103 57-138 (403)
175 PRK08045 cystathionine gamma-s 98.4 1.5E-06 3.2E-11 63.8 7.8 79 17-101 44-123 (386)
176 PRK07179 hypothetical protein; 98.4 5.2E-06 1.1E-10 60.9 10.2 87 3-101 79-166 (407)
177 TIGR01326 OAH_OAS_sulfhy OAH/O 98.4 2.2E-06 4.7E-11 63.5 8.3 78 20-103 52-130 (418)
178 PRK09440 avtA valine--pyruvate 98.4 1E-06 2.2E-11 64.7 6.4 62 25-86 74-143 (416)
179 PRK05937 8-amino-7-oxononanoat 98.4 1.7E-06 3.7E-11 62.8 7.2 73 12-90 39-115 (370)
180 PRK13238 tnaA tryptophanase/L- 98.4 3.1E-06 6.8E-11 63.5 8.6 71 24-104 77-147 (460)
181 TIGR01324 cysta_beta_ly_B cyst 98.3 2.9E-06 6.3E-11 62.1 8.0 79 19-103 44-123 (377)
182 PRK05939 hypothetical protein; 98.3 3.6E-06 7.8E-11 62.0 8.3 81 17-103 39-119 (397)
183 PRK06234 methionine gamma-lyas 98.3 6.6E-06 1.4E-10 60.6 9.7 75 23-103 62-137 (400)
184 PRK08776 cystathionine gamma-s 98.3 3.8E-06 8.1E-11 62.1 8.3 80 18-103 53-133 (405)
185 TIGR01328 met_gam_lyase methio 98.3 5.8E-06 1.3E-10 60.7 9.0 81 17-103 51-132 (391)
186 PLN02483 serine palmitoyltrans 98.3 3.6E-06 7.8E-11 63.5 8.0 73 22-103 143-215 (489)
187 PRK08354 putative aminotransfe 98.3 6E-06 1.3E-10 58.6 8.6 67 27-104 42-108 (311)
188 PLN02672 methionine S-methyltr 98.3 8.8E-06 1.9E-10 66.2 10.1 71 27-104 736-809 (1082)
189 PRK05968 hypothetical protein; 98.3 7.2E-06 1.6E-10 60.2 8.8 76 22-103 60-136 (389)
190 TIGR01437 selA_rel uncharacter 98.3 7.8E-06 1.7E-10 59.5 8.8 74 24-103 44-133 (363)
191 KOG0634|consensus 98.3 1.7E-06 3.8E-11 63.7 5.2 82 20-108 95-183 (472)
192 PRK06939 2-amino-3-ketobutyrat 98.3 6.4E-06 1.4E-10 59.7 8.1 70 24-102 86-155 (397)
193 PRK04366 glycine dehydrogenase 98.3 1.9E-05 4.1E-10 59.5 10.8 84 20-109 108-197 (481)
194 PRK07811 cystathionine gamma-s 98.3 5.6E-06 1.2E-10 60.7 7.8 78 20-103 56-134 (388)
195 TIGR01366 serC_3 phosphoserine 98.2 1.1E-05 2.4E-10 58.6 8.8 80 20-104 36-117 (361)
196 PRK08248 O-acetylhomoserine am 98.2 8.2E-06 1.8E-10 60.8 7.9 78 20-103 59-137 (431)
197 KOG0257|consensus 98.2 8.2E-06 1.8E-10 59.9 7.5 77 20-103 68-147 (420)
198 PRK07810 O-succinylhomoserine 98.2 1.1E-05 2.5E-10 59.5 8.3 78 20-103 65-143 (403)
199 TIGR00858 bioF 8-amino-7-oxono 98.2 1.2E-05 2.6E-10 57.4 8.1 69 25-102 61-129 (360)
200 PRK08247 cystathionine gamma-s 98.2 9.9E-06 2.2E-10 58.9 7.5 80 17-103 44-124 (366)
201 COG0399 WecE Predicted pyridox 98.2 2.8E-05 6E-10 57.0 9.5 76 26-109 35-111 (374)
202 PRK05967 cystathionine beta-ly 98.1 2.2E-05 4.7E-10 58.0 8.7 78 20-103 59-137 (395)
203 PLN02242 methionine gamma-lyas 98.1 1.8E-05 4E-10 58.7 8.2 81 17-103 68-150 (418)
204 PRK06767 methionine gamma-lyas 98.1 2.2E-05 4.7E-10 57.6 8.2 79 19-103 55-134 (386)
205 PRK06434 cystathionine gamma-l 98.1 2.4E-05 5.3E-10 57.5 8.4 79 20-104 59-138 (384)
206 PRK07812 O-acetylhomoserine am 98.1 3.4E-05 7.4E-10 57.6 9.2 77 19-101 63-140 (436)
207 KOG0256|consensus 98.1 5.1E-06 1.1E-10 61.0 4.6 78 23-106 119-205 (471)
208 PRK05958 8-amino-7-oxononanoat 98.1 3E-05 6.5E-10 55.9 8.5 71 24-103 83-153 (385)
209 PRK05994 O-acetylhomoserine am 98.1 2.3E-05 4.9E-10 58.3 8.0 74 24-103 62-136 (427)
210 PRK07504 O-succinylhomoserine 98.1 2E-05 4.4E-10 58.0 7.5 76 20-101 60-136 (398)
211 TIGR03799 NOD_PanD_pyr putativ 98.1 4.5E-05 9.8E-10 58.2 9.5 89 18-109 122-248 (522)
212 PRK09275 aspartate aminotransf 98.1 3.5E-05 7.7E-10 58.8 8.6 79 25-104 134-223 (527)
213 cd00617 Tnase_like Tryptophana 98.0 3.7E-05 8E-10 57.4 8.3 70 25-104 53-122 (431)
214 PRK06176 cystathionine gamma-s 98.0 3.8E-05 8.2E-10 56.3 8.0 80 17-103 42-122 (380)
215 PRK04311 selenocysteine syntha 98.0 6.5E-05 1.4E-09 56.5 9.2 71 25-103 127-201 (464)
216 PRK07671 cystathionine beta-ly 98.0 4.3E-05 9.3E-10 55.9 8.1 80 17-103 42-122 (377)
217 PRK07049 methionine gamma-lyas 98.0 4.6E-05 1E-09 56.7 8.0 76 20-101 78-154 (427)
218 PRK10534 L-threonine aldolase; 98.0 4.2E-05 9.2E-10 54.5 7.3 80 24-109 33-112 (333)
219 PRK06702 O-acetylhomoserine am 98.0 0.00016 3.4E-09 54.1 10.4 73 24-102 60-133 (432)
220 PF00282 Pyridoxal_deC: Pyrido 97.9 0.00018 4E-09 52.7 10.5 89 18-109 72-177 (373)
221 TIGR03801 asp_4_decarbox aspar 97.9 0.00011 2.4E-09 56.0 9.5 60 44-104 157-217 (521)
222 PLN03227 serine palmitoyltrans 97.9 0.00013 2.9E-09 53.6 9.6 71 24-103 42-112 (392)
223 PRK05355 3-phosphoserine/phosp 97.9 8.7E-05 1.9E-09 54.0 8.4 86 11-103 31-122 (360)
224 PRK08114 cystathionine beta-ly 97.9 9.4E-05 2E-09 54.6 8.3 81 17-103 54-135 (395)
225 PRK06084 O-acetylhomoserine am 97.9 6.3E-05 1.4E-09 55.9 7.5 81 17-103 50-131 (425)
226 TIGR00474 selA seryl-tRNA(sec) 97.9 0.00015 3.2E-09 54.5 9.0 71 25-103 122-196 (454)
227 PF12897 Aminotran_MocR: Alani 97.8 0.00014 2.9E-09 53.5 7.2 82 23-107 67-158 (425)
228 PRK13393 5-aminolevulinate syn 97.7 0.00039 8.5E-09 51.1 9.3 71 25-102 90-160 (406)
229 PF01276 OKR_DC_1: Orn/Lys/Arg 97.7 0.0002 4.4E-09 53.2 7.5 71 25-103 66-136 (417)
230 PRK05367 glycine dehydrogenase 97.7 0.00053 1.2E-08 55.7 10.0 80 22-109 539-626 (954)
231 COG0076 GadB Glutamate decarbo 97.7 0.00046 9.9E-09 52.0 8.9 98 4-109 85-194 (460)
232 TIGR01825 gly_Cac_T_rel pyrido 97.6 0.00047 1E-08 50.0 8.6 69 24-101 77-145 (385)
233 PRK13392 5-aminolevulinate syn 97.6 0.00061 1.3E-08 50.1 9.0 70 26-102 92-161 (410)
234 PLN02822 serine palmitoyltrans 97.6 0.00069 1.5E-08 51.2 9.4 73 22-103 151-223 (481)
235 PLN02509 cystathionine beta-ly 97.6 0.001 2.2E-08 50.2 10.2 72 25-103 133-205 (464)
236 KOG0258|consensus 97.6 8.8E-05 1.9E-09 54.5 4.3 77 22-104 110-192 (475)
237 COG1103 Archaea-specific pyrid 97.6 0.0006 1.3E-08 48.3 7.9 69 25-102 61-129 (382)
238 TIGR03531 selenium_SpcS O-phos 97.6 0.0014 3.1E-08 49.2 10.1 76 23-102 103-180 (444)
239 TIGR03811 tyr_de_CO2_Ent tyros 97.5 0.0016 3.4E-08 50.7 10.5 99 8-109 106-261 (608)
240 PF01053 Cys_Met_Meta_PP: Cys/ 97.5 0.0011 2.5E-08 48.8 8.7 81 17-103 47-128 (386)
241 PF01212 Beta_elim_lyase: Beta 97.4 0.00067 1.5E-08 48.2 6.7 81 23-109 27-107 (290)
242 PRK13578 ornithine decarboxyla 97.4 0.0018 4E-08 51.2 9.3 73 25-104 174-246 (720)
243 PLN02271 serine hydroxymethylt 97.4 0.0013 2.9E-08 50.6 8.0 95 9-109 178-286 (586)
244 PRK15029 arginine decarboxylas 97.4 0.0018 3.8E-08 51.5 8.8 71 25-103 205-275 (755)
245 PRK07269 cystathionine gamma-s 97.3 0.00085 1.8E-08 49.0 6.4 66 17-89 46-111 (364)
246 PLN02880 tyrosine decarboxylas 97.3 0.0033 7.1E-08 47.8 9.7 90 17-109 114-222 (490)
247 PRK15399 lysine decarboxylase 97.3 0.0027 5.9E-08 50.2 9.2 71 25-103 195-265 (713)
248 PLN02590 probable tyrosine dec 97.3 0.0041 9E-08 47.8 10.0 91 16-109 161-270 (539)
249 PRK15400 lysine decarboxylase 97.3 0.0031 6.8E-08 49.9 9.4 72 25-104 195-266 (714)
250 TIGR01821 5aminolev_synth 5-am 97.3 0.0044 9.4E-08 45.5 9.7 71 24-101 89-159 (402)
251 PLN02397 aspartate transaminas 97.2 0.0013 2.9E-08 48.7 6.7 77 21-102 87-171 (423)
252 cd00610 OAT_like Acetyl ornith 97.2 0.0027 5.9E-08 46.4 8.2 64 25-90 79-142 (413)
253 PRK13034 serine hydroxymethylt 97.1 0.0024 5.2E-08 47.4 6.9 58 20-82 68-126 (416)
254 COG0075 Serine-pyruvate aminot 97.1 0.013 2.9E-07 43.3 10.4 79 19-103 32-112 (383)
255 PRK12566 glycine dehydrogenase 97.0 0.0052 1.1E-07 49.9 8.4 84 21-109 539-627 (954)
256 COG2008 GLY1 Threonine aldolas 96.9 0.0021 4.5E-08 46.6 5.0 57 21-83 31-87 (342)
257 KOG2862|consensus 96.9 0.022 4.7E-07 41.2 9.9 92 7-105 34-126 (385)
258 COG1168 MalY Bifunctional PLP- 96.9 0.0096 2.1E-07 43.7 8.0 78 23-107 62-142 (388)
259 TIGR00461 gcvP glycine dehydro 96.9 0.0092 2E-07 48.6 8.7 85 21-109 526-614 (939)
260 TIGR01365 serC_2 phosphoserine 96.8 0.024 5.2E-07 41.8 10.1 77 20-103 34-115 (374)
261 COG0626 MetC Cystathionine bet 96.8 0.012 2.6E-07 43.6 8.2 81 17-103 55-136 (396)
262 COG1982 LdcC Arginine/lysine/o 96.6 0.024 5.3E-07 43.7 9.0 71 26-104 71-141 (557)
263 PRK09064 5-aminolevulinate syn 96.5 0.037 8E-07 40.6 9.4 72 24-102 90-161 (407)
264 PF02347 GDC-P: Glycine cleava 96.5 0.03 6.4E-07 42.0 8.5 87 22-109 107-194 (429)
265 TIGR00461 gcvP glycine dehydro 96.5 0.023 5E-07 46.4 8.4 81 22-103 106-187 (939)
266 PF00464 SHMT: Serine hydroxym 96.4 0.0063 1.4E-07 45.2 4.7 95 10-109 51-157 (399)
267 PLN03226 serine hydroxymethylt 96.2 0.046 1E-06 41.5 8.3 65 9-78 64-132 (475)
268 PRK07505 hypothetical protein; 96.2 0.12 2.6E-06 38.0 10.2 77 23-103 89-167 (402)
269 TIGR02618 tyr_phenol_ly tyrosi 96.0 0.081 1.7E-06 40.0 8.8 68 26-103 72-139 (450)
270 KOG0633|consensus 95.9 0.0044 9.5E-08 43.8 1.7 63 40-109 84-147 (375)
271 COG0112 GlyA Glycine/serine hy 95.7 0.016 3.5E-07 42.8 3.8 94 10-109 57-154 (413)
272 PLN02452 phosphoserine transam 95.4 0.28 6E-06 36.1 9.4 73 20-98 47-122 (365)
273 TIGR00707 argD acetylornithine 95.2 0.1 2.2E-06 37.7 6.7 55 25-82 69-127 (379)
274 PRK03244 argD acetylornithine 95.0 0.12 2.5E-06 37.9 6.5 54 28-84 88-142 (398)
275 PRK01278 argD acetylornithine 94.8 0.14 3E-06 37.4 6.5 57 30-88 78-138 (389)
276 COG2873 MET17 O-acetylhomoseri 94.8 0.096 2.1E-06 38.7 5.4 78 21-104 58-136 (426)
277 PRK12462 phosphoserine aminotr 94.8 0.55 1.2E-05 34.6 9.4 51 20-74 44-96 (364)
278 KOG0053|consensus 94.3 0.18 4E-06 37.6 6.1 80 19-104 71-151 (409)
279 KOG1368|consensus 94.2 0.14 3E-06 37.1 5.0 78 27-109 58-135 (384)
280 TIGR00713 hemL glutamate-1-sem 93.8 0.35 7.7E-06 35.8 6.9 56 25-83 88-143 (423)
281 PF06838 Met_gamma_lyase: Meth 93.8 0.099 2.2E-06 38.6 3.8 76 28-109 57-143 (403)
282 PLN02955 8-amino-7-oxononanoat 93.7 0.88 1.9E-05 34.8 8.9 79 23-103 145-234 (476)
283 PRK02627 acetylornithine amino 93.6 0.2 4.3E-06 36.5 5.3 51 30-82 86-139 (396)
284 PRK13237 tyrosine phenol-lyase 92.9 1.5 3.3E-05 33.4 9.0 65 26-100 79-143 (460)
285 COG1184 GCD2 Translation initi 92.4 2 4.3E-05 31.0 8.6 74 23-101 98-177 (301)
286 COG1003 GcvP Glycine cleavage 91.4 1.9 4.1E-05 32.8 7.9 81 24-109 108-193 (496)
287 PRK04260 acetylornithine amino 90.4 1.2 2.7E-05 32.3 6.2 52 28-81 69-121 (375)
288 COG3844 Kynureninase [Amino ac 90.2 1.1 2.4E-05 32.9 5.6 60 28-89 79-139 (407)
289 KOG2142|consensus 89.9 0.79 1.7E-05 36.3 4.9 57 6-64 46-104 (728)
290 COG4100 Cystathionine beta-lya 89.8 0.85 1.8E-05 33.2 4.7 76 29-109 69-154 (416)
291 COG0156 BioF 7-keto-8-aminopel 89.5 4.3 9.3E-05 30.3 8.3 72 22-102 81-152 (388)
292 PRK00854 rocD ornithine--oxo-a 89.3 1.7 3.7E-05 31.8 6.3 56 26-83 84-145 (401)
293 PF04864 Alliinase_C: Allinase 88.9 2.4 5.2E-05 31.2 6.5 65 26-90 47-116 (363)
294 PRK02936 argD acetylornithine 87.9 2.2 4.8E-05 30.9 6.0 54 28-83 70-125 (377)
295 KOG1383|consensus 87.9 3.7 8E-05 31.4 7.1 77 24-104 119-201 (491)
296 PRK13580 serine hydroxymethylt 87.6 2.2 4.7E-05 32.9 5.9 53 9-63 79-132 (493)
297 COG2242 CobL Precorrin-6B meth 87.4 3.5 7.6E-05 27.7 6.2 59 42-103 103-162 (187)
298 PRK04013 argD acetylornithine/ 87.1 3.2 6.9E-05 30.5 6.4 53 28-84 69-121 (364)
299 PRK00062 glutamate-1-semialdeh 86.7 3.8 8.2E-05 30.6 6.7 55 27-84 92-146 (426)
300 PF01282 Ribosomal_S24e: Ribos 86.6 0.94 2E-05 26.4 2.8 24 26-49 14-37 (84)
301 PRK08117 4-aminobutyrate amino 83.6 7.9 0.00017 28.9 7.2 54 27-82 88-141 (433)
302 PRK10494 hypothetical protein; 83.5 7.2 0.00016 27.4 6.6 31 71-103 180-210 (259)
303 PTZ00125 ornithine aminotransf 83.0 5.2 0.00011 29.2 6.0 57 25-83 73-135 (400)
304 COG1932 SerC Phosphoserine ami 83.0 16 0.00034 27.2 8.2 60 20-83 45-108 (365)
305 COG0403 GcvP Glycine cleavage 82.9 19 0.00041 27.5 9.1 79 24-103 119-198 (450)
306 KOG1403|consensus 81.4 4.5 9.8E-05 29.6 4.9 46 26-74 88-133 (452)
307 COG4992 ArgD Ornithine/acetylo 81.0 9.6 0.00021 28.7 6.6 50 29-80 88-139 (404)
308 PRK07523 gluconate 5-dehydroge 80.3 14 0.0003 25.0 7.0 57 43-103 11-67 (255)
309 PRK12403 putative aminotransfe 80.1 8.9 0.00019 29.1 6.4 37 27-63 100-136 (460)
310 PRK07097 gluconate 5-dehydroge 79.8 13 0.00027 25.4 6.7 36 68-103 32-67 (265)
311 PRK05876 short chain dehydroge 79.5 14 0.00031 25.6 7.0 36 68-103 28-63 (275)
312 PRK08085 gluconate 5-dehydroge 79.4 16 0.00036 24.6 7.2 56 44-103 11-66 (254)
313 PRK01178 rps24e 30S ribosomal 79.0 2.9 6.2E-05 25.2 2.9 22 28-49 34-55 (99)
314 COG2004 RPS24A Ribosomal prote 79.0 2.8 6.1E-05 25.6 2.8 26 28-53 35-60 (107)
315 TIGR01885 Orn_aminotrans ornit 78.9 10 0.00022 27.9 6.3 55 25-81 79-139 (401)
316 PRK04073 rocD ornithine--oxo-a 78.6 9.1 0.0002 28.1 6.0 54 28-83 85-144 (396)
317 PF15608 PELOTA_1: PELOTA RNA 78.1 13 0.00027 22.5 6.9 64 32-103 26-89 (100)
318 PF06180 CbiK: Cobalt chelatas 77.4 13 0.00028 26.3 6.1 79 24-102 121-205 (262)
319 PRK05964 adenosylmethionine--8 77.4 16 0.00035 27.2 7.0 58 29-87 89-151 (423)
320 PRK13028 tryptophan synthase s 77.3 27 0.00059 26.2 8.1 58 42-102 110-168 (402)
321 PRK03715 argD acetylornithine 76.0 9.8 0.00021 28.2 5.5 33 31-63 80-114 (395)
322 PRK12381 bifunctional succinyl 75.8 14 0.0003 27.4 6.3 53 28-83 84-141 (406)
323 COG3977 Alanine-alpha-ketoisov 75.5 6.8 0.00015 28.7 4.4 24 40-63 95-118 (417)
324 PRK06935 2-deoxy-D-gluconate 3 75.3 22 0.00047 24.1 6.9 62 37-103 10-71 (258)
325 PRK00084 ispF 2-C-methyl-D-ery 75.2 2.5 5.5E-05 27.6 2.0 34 23-56 107-140 (159)
326 TIGR01275 ACC_deam_rel pyridox 74.9 16 0.00035 26.0 6.3 57 44-102 57-113 (311)
327 PF00202 Aminotran_3: Aminotra 74.8 17 0.00037 26.3 6.5 56 27-82 61-120 (339)
328 PRK05639 4-aminobutyrate amino 74.4 22 0.00048 27.0 7.1 53 29-83 100-152 (457)
329 PRK04346 tryptophan synthase s 74.1 33 0.0007 25.8 7.8 58 42-102 106-164 (397)
330 PRK05867 short chain dehydroge 73.7 25 0.00054 23.8 7.0 10 68-77 31-40 (253)
331 PRK13394 3-hydroxybutyrate deh 73.4 24 0.00052 23.8 6.6 36 68-103 29-64 (262)
332 PRK06062 hypothetical protein; 73.1 21 0.00045 27.1 6.7 53 29-83 99-151 (451)
333 PRK07478 short chain dehydroge 73.0 24 0.00052 23.8 6.6 6 69-74 29-34 (254)
334 PRK03910 D-cysteine desulfhydr 72.9 33 0.00071 24.8 8.7 60 43-103 65-129 (331)
335 PRK06082 4-aminobutyrate amino 72.8 22 0.00048 27.0 6.9 53 28-82 116-168 (459)
336 PRK11522 putrescine--2-oxoglut 72.1 26 0.00057 26.6 7.1 53 29-82 128-182 (459)
337 COG1921 SelA Selenocysteine sy 72.1 18 0.0004 27.1 6.1 69 25-101 65-139 (395)
338 TIGR03372 putres_am_tran putre 71.9 23 0.0005 26.8 6.7 53 29-82 121-175 (442)
339 PRK13803 bifunctional phosphor 71.9 36 0.00077 27.0 7.9 58 42-102 318-376 (610)
340 PTZ00071 40S ribosomal protein 71.7 5.7 0.00012 25.2 2.9 22 27-48 38-60 (132)
341 PRK06113 7-alpha-hydroxysteroi 71.6 28 0.00061 23.5 7.1 30 44-77 13-42 (255)
342 PF00106 adh_short: short chai 71.3 22 0.00048 22.1 6.1 17 87-103 44-60 (167)
343 TIGR00151 ispF 2C-methyl-D-ery 71.0 2.9 6.3E-05 27.2 1.5 34 23-56 104-137 (155)
344 cd00554 MECDP_synthase MECDP_s 70.8 3.1 6.8E-05 27.0 1.6 34 23-56 104-137 (153)
345 TIGR03246 arg_catab_astC succi 70.0 28 0.00061 25.6 6.8 54 27-83 79-137 (397)
346 COG0245 IspF 2C-methyl-D-eryth 69.7 2.7 5.9E-05 27.4 1.2 34 22-55 104-137 (159)
347 PRK07035 short chain dehydroge 69.5 31 0.00068 23.1 7.1 11 68-78 30-40 (252)
348 PRK05965 hypothetical protein; 69.3 20 0.00043 27.2 5.9 54 29-83 94-152 (459)
349 PRK08589 short chain dehydroge 68.8 32 0.0007 23.6 6.5 9 68-76 28-36 (272)
350 PRK00615 glutamate-1-semialdeh 68.6 35 0.00075 25.8 7.0 51 30-82 98-148 (433)
351 PRK06918 4-aminobutyrate amino 68.1 30 0.00066 26.0 6.7 54 28-83 100-154 (451)
352 KOG3424|consensus 67.5 8 0.00017 24.1 2.9 36 28-63 38-80 (132)
353 PRK06943 adenosylmethionine--8 67.4 30 0.00066 26.2 6.5 55 29-83 101-159 (453)
354 PRK07109 short chain dehydroge 67.2 33 0.00072 24.6 6.5 12 92-103 54-65 (334)
355 TIGR02617 tnaA_trp_ase tryptop 67.1 12 0.00027 28.6 4.4 71 26-101 75-150 (467)
356 TIGR00263 trpB tryptophan synt 66.9 50 0.0011 24.5 8.8 58 42-102 98-156 (385)
357 PRK06917 hypothetical protein; 66.7 33 0.00071 26.0 6.6 56 28-83 77-136 (447)
358 PRK05769 4-aminobutyrate amino 66.6 36 0.00078 25.7 6.8 54 29-84 101-155 (441)
359 PRK12389 glutamate-1-semialdeh 66.6 40 0.00087 25.2 7.0 40 42-83 109-148 (428)
360 PRK08217 fabG 3-ketoacyl-(acyl 66.3 36 0.00078 22.7 6.8 8 69-76 28-35 (253)
361 PF02542 YgbB: YgbB family; I 66.1 2.5 5.5E-05 27.6 0.5 35 24-58 106-140 (157)
362 PRK08360 4-aminobutyrate amino 65.9 40 0.00087 25.4 6.9 51 30-82 89-139 (443)
363 PRK07480 putative aminotransfe 65.6 27 0.00058 26.5 6.0 36 28-63 97-132 (456)
364 PRK06916 adenosylmethionine--8 65.5 47 0.001 25.2 7.3 54 29-82 103-160 (460)
365 PRK06139 short chain dehydroge 65.5 32 0.0007 24.8 6.2 36 68-103 29-64 (330)
366 PRK06148 hypothetical protein; 65.2 35 0.00077 28.8 7.0 52 29-82 667-718 (1013)
367 KOG1404|consensus 65.1 6.1 0.00013 29.7 2.4 39 25-63 92-130 (442)
368 PRK06114 short chain dehydroge 65.1 40 0.00087 22.8 6.8 57 43-103 9-66 (254)
369 PRK06194 hypothetical protein; 65.0 43 0.00092 23.0 6.8 10 68-77 28-37 (287)
370 PRK05650 short chain dehydroge 64.9 37 0.0008 23.2 6.2 16 44-59 26-41 (270)
371 PRK07986 adenosylmethionine--8 64.2 42 0.00091 25.3 6.7 52 30-82 91-146 (428)
372 PRK07046 aminotransferase; Val 63.8 46 0.001 25.3 6.9 50 30-83 120-169 (453)
373 PRK07890 short chain dehydroge 63.6 42 0.00091 22.5 6.2 7 69-75 28-34 (258)
374 PRK08593 4-aminobutyrate amino 63.2 45 0.00097 25.2 6.8 53 28-82 88-141 (445)
375 COG1448 TyrB Aspartate/tyrosin 63.2 30 0.00065 26.0 5.6 73 24-101 68-148 (396)
376 PRK08277 D-mannonate oxidoredu 63.1 46 0.001 22.8 7.1 8 68-75 32-39 (278)
377 PRK13360 omega amino acid--pyr 63.0 40 0.00087 25.4 6.5 53 29-82 93-150 (442)
378 PF02594 DUF167: Uncharacteris 62.8 9.6 0.00021 21.7 2.5 25 28-52 43-67 (77)
379 TIGR01078 arcA arginine deimin 62.6 15 0.00032 27.6 4.1 67 30-104 313-385 (405)
380 TIGR00524 eIF-2B_rel eIF-2B al 62.5 56 0.0012 23.6 7.8 58 41-102 117-186 (303)
381 PRK06149 hypothetical protein; 62.4 40 0.00086 28.3 6.8 54 27-82 626-679 (972)
382 PRK08213 gluconate 5-dehydroge 62.3 46 0.00099 22.5 7.2 10 68-77 34-43 (259)
383 PRK06105 aminotransferase; Pro 62.2 12 0.00025 28.4 3.5 35 28-62 95-129 (460)
384 COG0300 DltE Short-chain dehyd 62.0 49 0.0011 23.5 6.3 54 46-103 9-64 (265)
385 cd06409 PB1_MUG70 The MUG70 pr 62.0 9.1 0.0002 22.4 2.3 73 15-102 11-83 (86)
386 PRK05630 adenosylmethionine--8 61.9 43 0.00092 25.1 6.4 54 28-82 86-144 (422)
387 PRK06058 4-aminobutyrate amino 61.9 51 0.0011 24.8 6.9 53 30-84 104-157 (443)
388 PRK08643 acetoin reductase; Va 61.7 46 0.001 22.4 6.6 6 44-49 28-33 (256)
389 PRK08862 short chain dehydroge 61.4 47 0.001 22.3 6.9 18 44-61 31-48 (227)
390 PRK08335 translation initiatio 61.0 58 0.0013 23.2 9.6 73 25-101 90-167 (275)
391 TIGR00511 ribulose_e2b2 ribose 60.4 61 0.0013 23.3 9.6 72 27-101 98-173 (301)
392 PRK06720 hypothetical protein; 60.0 45 0.00097 21.6 6.8 14 68-81 38-51 (169)
393 cd03027 GRX_DEP Glutaredoxin ( 59.8 27 0.00058 18.9 4.5 32 73-104 4-35 (73)
394 PLN02496 probable phosphopanto 59.6 37 0.0008 23.3 5.2 57 42-98 97-166 (209)
395 PRK08340 glucose-1-dehydrogena 59.6 49 0.0011 22.4 6.0 19 44-62 26-44 (259)
396 PRK12566 glycine dehydrogenase 59.5 1.1E+02 0.0024 26.0 8.7 78 23-101 122-200 (954)
397 PLN02618 tryptophan synthase, 59.4 75 0.0016 24.0 7.9 58 42-102 119-177 (410)
398 PRK07774 short chain dehydroge 59.3 51 0.0011 22.0 6.9 7 69-75 29-35 (250)
399 KOG3938|consensus 59.2 13 0.00027 26.7 3.0 25 25-49 73-97 (334)
400 PRK07063 short chain dehydroge 59.1 53 0.0011 22.2 7.0 9 68-76 29-37 (260)
401 PRK07481 hypothetical protein; 59.1 53 0.0012 24.8 6.5 53 29-82 90-148 (449)
402 PRK07495 4-aminobutyrate amino 58.8 63 0.0014 24.2 6.9 52 30-83 88-140 (425)
403 PRK07791 short chain dehydroge 58.4 60 0.0013 22.6 7.2 9 68-76 28-36 (286)
404 TIGR03206 benzo_BadH 2-hydroxy 58.4 52 0.0011 21.9 6.7 8 68-75 25-32 (250)
405 KOG1805|consensus 58.4 63 0.0014 27.5 7.0 69 28-100 672-743 (1100)
406 PRK07482 hypothetical protein; 58.4 30 0.00064 26.3 5.1 35 29-63 98-132 (461)
407 PRK01530 hypothetical protein; 58.2 12 0.00025 22.8 2.4 27 27-53 55-81 (105)
408 PRK07483 hypothetical protein; 57.9 61 0.0013 24.5 6.7 34 29-62 77-110 (443)
409 PRK02220 4-oxalocrotonate taut 57.7 23 0.0005 18.5 3.4 25 23-47 17-41 (61)
410 TIGR02415 23BDH acetoin reduct 57.6 55 0.0012 21.9 6.6 17 44-60 26-42 (254)
411 TIGR00700 GABAtrnsam 4-aminobu 57.3 67 0.0015 23.9 6.8 53 30-84 81-134 (420)
412 PRK08246 threonine dehydratase 56.9 70 0.0015 22.9 8.4 82 5-102 41-122 (310)
413 PRK07678 aminotransferase; Val 56.9 58 0.0013 24.6 6.4 52 29-82 93-149 (451)
414 PRK06777 4-aminobutyrate amino 56.7 71 0.0015 23.9 6.8 49 32-82 90-139 (421)
415 PLN02482 glutamate-1-semialdeh 56.6 76 0.0017 24.3 7.0 39 42-82 155-193 (474)
416 PLN02862 2-C-methyl-D-erythrit 55.6 8.6 0.00019 26.4 1.7 34 23-56 164-197 (216)
417 PRK07024 short chain dehydroge 55.2 58 0.0013 22.0 5.8 6 44-49 28-33 (257)
418 PRK01388 arginine deiminase; P 55.1 26 0.00056 26.4 4.2 67 29-103 314-385 (406)
419 PRK01964 4-oxalocrotonate taut 55.0 27 0.00059 18.6 3.4 25 23-47 17-41 (64)
420 PRK09221 beta alanine--pyruvat 54.9 36 0.00079 25.7 5.1 34 29-62 96-129 (445)
421 TIGR02113 coaC_strep phosphopa 54.8 56 0.0012 21.6 5.4 56 43-98 78-146 (177)
422 COG0001 HemL Glutamate-1-semia 54.8 55 0.0012 25.0 5.9 42 43-86 110-151 (432)
423 TIGR01963 PHB_DH 3-hydroxybuty 54.7 62 0.0013 21.6 6.4 12 44-55 27-38 (255)
424 COG0161 BioA Adenosylmethionin 54.7 28 0.00061 26.7 4.4 37 27-63 89-126 (449)
425 PRK07036 hypothetical protein; 53.7 38 0.00082 25.8 5.0 33 30-62 100-132 (466)
426 TIGR00699 GABAtrns_euk 4-amino 53.6 41 0.00089 25.8 5.2 21 42-62 122-142 (464)
427 PRK05090 hypothetical protein; 53.6 17 0.00037 21.6 2.6 26 28-53 49-74 (95)
428 PF14552 Tautomerase_2: Tautom 53.3 23 0.00049 20.4 3.0 24 25-48 47-70 (82)
429 PRK06173 adenosylmethionine--8 53.3 38 0.00083 25.5 5.0 35 29-63 91-125 (429)
430 PRK06541 hypothetical protein; 53.3 36 0.00079 25.8 4.9 34 29-62 99-132 (460)
431 PRK10717 cysteine synthase A; 53.2 83 0.0018 22.6 8.8 87 4-103 31-119 (330)
432 PRK11761 cysM cysteine synthas 53.1 81 0.0017 22.4 8.7 85 5-102 31-117 (296)
433 PRK00377 cbiT cobalt-precorrin 53.0 64 0.0014 21.2 5.6 31 67-97 135-165 (198)
434 PF01008 IF-2B: Initiation fac 52.5 78 0.0017 22.1 9.0 73 25-102 88-166 (282)
435 TIGR01139 cysK cysteine syntha 52.0 82 0.0018 22.2 8.6 86 5-103 25-112 (298)
436 PRK07030 adenosylmethionine--8 51.5 43 0.00093 25.5 5.0 34 29-62 94-127 (466)
437 PRK05866 short chain dehydroge 51.4 82 0.0018 22.0 6.2 55 45-103 43-97 (293)
438 PRK13912 nuclease NucT; Provis 51.2 67 0.0014 21.0 7.3 55 42-100 21-78 (177)
439 COG3967 DltE Short-chain dehyd 51.1 24 0.00052 24.5 3.2 32 42-77 5-36 (245)
440 PRK09731 putative general secr 50.8 39 0.00085 22.5 4.2 38 72-109 128-169 (178)
441 PF06406 StbA: StbA protein; 50.7 82 0.0018 22.6 6.1 42 41-87 272-313 (318)
442 PRK01310 hypothetical protein; 50.5 21 0.00045 21.6 2.6 27 27-53 54-80 (104)
443 KOG3846|consensus 50.2 16 0.00035 27.0 2.4 66 30-96 116-182 (465)
444 cd00491 4Oxalocrotonate_Tautom 49.9 36 0.00077 17.4 3.7 25 23-47 16-40 (58)
445 TIGR00508 bioA adenosylmethion 49.9 68 0.0015 24.1 5.8 54 30-83 93-150 (427)
446 PF03841 SelA: L-seryl-tRNA se 49.8 5.4 0.00012 29.6 0.0 68 28-102 50-120 (367)
447 PRK04017 hypothetical protein; 49.7 65 0.0014 20.4 4.9 50 43-97 44-96 (132)
448 PF00325 Crp: Bacterial regula 49.5 4 8.6E-05 19.3 -0.5 13 30-42 4-16 (32)
449 TIGR01415 trpB_rel pyridoxal-p 49.1 1.1E+02 0.0025 23.1 9.1 58 43-103 118-176 (419)
450 PRK00647 hypothetical protein; 49.0 22 0.00048 21.3 2.5 27 27-53 43-69 (96)
451 KOG1251|consensus 49.0 54 0.0012 23.5 4.7 62 43-108 120-187 (323)
452 KOG1359|consensus 48.9 33 0.00071 25.2 3.8 57 26-88 113-169 (417)
453 KOG1201|consensus 48.9 89 0.0019 22.7 5.9 56 43-103 39-94 (300)
454 PRK09792 4-aminobutyrate trans 48.7 1.1E+02 0.0024 22.8 7.2 39 43-83 102-140 (421)
455 PRK00517 prmA ribosomal protei 48.2 88 0.0019 21.5 7.2 58 44-102 181-238 (250)
456 PRK08297 L-lysine aminotransfe 47.7 55 0.0012 24.7 5.1 33 30-62 97-130 (443)
457 PLN02760 4-aminobutyrate:pyruv 47.7 92 0.002 24.1 6.3 55 29-83 137-196 (504)
458 PRK08329 threonine synthase; V 47.7 1.1E+02 0.0023 22.3 8.7 83 5-102 76-158 (347)
459 PRK06372 translation initiatio 47.6 98 0.0021 21.8 9.4 53 43-101 87-141 (253)
460 PRK08638 threonine dehydratase 47.5 1.1E+02 0.0023 22.3 8.1 83 5-101 46-128 (333)
461 PRK01192 50S ribosomal protein 47.5 32 0.00069 20.3 3.0 36 18-53 21-56 (89)
462 TIGR00013 taut 4-oxalocrotonat 47.1 43 0.00093 17.5 3.7 24 23-46 17-40 (63)
463 PRK05883 acyl carrier protein; 47.1 18 0.0004 21.1 2.0 28 23-50 12-39 (91)
464 PRK05855 short chain dehydroge 47.1 1.1E+02 0.0024 23.2 6.7 57 43-103 315-372 (582)
465 PRK06181 short chain dehydroge 47.1 87 0.0019 21.1 6.5 9 44-52 27-35 (263)
466 PF13880 Acetyltransf_13: ESCO 47.0 36 0.00077 19.1 3.0 37 22-60 22-60 (70)
467 PRK05093 argD bifunctional N-s 46.7 1.2E+02 0.0025 22.4 6.9 32 29-62 86-117 (403)
468 PF08541 ACP_syn_III_C: 3-Oxoa 46.1 55 0.0012 18.5 4.0 44 33-76 26-75 (90)
469 PRK05638 threonine synthase; V 45.9 1.3E+02 0.0028 22.7 9.2 83 5-102 84-166 (442)
470 PRK06450 threonine synthase; V 45.8 1.2E+02 0.0025 22.2 9.6 84 4-102 68-151 (338)
471 PRK07666 fabG 3-ketoacyl-(acyl 45.3 89 0.0019 20.7 6.7 10 44-53 33-42 (239)
472 TIGR01138 cysM cysteine syntha 45.2 1.1E+02 0.0024 21.7 9.4 85 5-102 27-113 (290)
473 PRK10416 signal recognition pa 44.6 1.2E+02 0.0026 22.0 7.3 78 26-103 217-295 (318)
474 PLN03013 cysteine synthase 44.5 1.4E+02 0.0031 22.8 9.3 87 4-103 141-230 (429)
475 PRK08339 short chain dehydroge 44.5 1E+02 0.0022 21.1 6.5 9 68-76 30-38 (263)
476 PF08659 KR: KR domain; Inter 44.3 87 0.0019 20.3 6.8 24 80-103 38-61 (181)
477 PRK05854 short chain dehydroge 44.1 1.1E+02 0.0025 21.6 6.1 9 68-76 36-44 (313)
478 PF04413 Glycos_transf_N: 3-De 43.3 62 0.0014 21.4 4.3 37 25-61 32-69 (186)
479 PF05711 TylF: Macrocin-O-meth 43.0 52 0.0011 23.1 4.0 41 67-107 202-243 (248)
480 TIGR02667 moaB_proteo molybden 42.7 38 0.00083 21.9 3.2 28 25-52 46-73 (163)
481 TIGR03251 LAT_fam L-lysine 6-t 41.9 75 0.0016 23.8 5.0 21 42-62 103-123 (431)
482 PRK08088 4-aminobutyrate amino 41.9 1.5E+02 0.0031 22.2 7.2 40 43-84 103-142 (425)
483 PRK12384 sorbitol-6-phosphate 41.6 1.1E+02 0.0023 20.6 6.8 7 69-75 25-31 (259)
484 PRK06381 threonine synthase; V 41.5 1.3E+02 0.0028 21.5 7.7 84 4-102 34-117 (319)
485 PRK07792 fabG 3-ketoacyl-(acyl 41.1 1.3E+02 0.0027 21.2 7.7 36 68-103 34-70 (306)
486 PF09581 Spore_III_AF: Stage I 40.9 29 0.00064 22.7 2.5 25 23-47 162-186 (188)
487 PRK10358 putative rRNA methyla 40.9 81 0.0018 20.3 4.5 28 73-100 4-32 (157)
488 PF13443 HTH_26: Cro/C1-type H 40.5 5.5 0.00012 21.1 -0.9 15 32-46 44-58 (63)
489 cd00640 Trp-synth-beta_II Tryp 40.4 1.2E+02 0.0025 20.6 8.5 88 4-103 18-105 (244)
490 PRK08936 glucose-1-dehydrogena 40.3 1.2E+02 0.0025 20.5 7.1 63 37-103 2-65 (261)
491 PRK06940 short chain dehydroge 40.1 1.2E+02 0.0027 20.8 6.2 56 43-103 2-57 (275)
492 PTZ00397 macrophage migration 40.0 64 0.0014 19.4 3.7 25 24-48 75-99 (116)
493 KOG1201|consensus 39.8 67 0.0015 23.3 4.2 42 69-110 37-78 (300)
494 PRK09072 short chain dehydroge 39.7 1.2E+02 0.0026 20.5 6.5 61 38-103 1-61 (263)
495 PF02602 HEM4: Uroporphyrinoge 39.5 74 0.0016 21.2 4.3 68 28-102 81-148 (231)
496 PRK12823 benD 1,6-dihydroxycyc 39.2 1.2E+02 0.0026 20.4 6.7 58 41-103 7-64 (260)
497 PRK12391 tryptophan synthase s 38.6 1.8E+02 0.0038 22.2 9.0 90 4-105 97-187 (427)
498 KOG2040|consensus 38.5 54 0.0012 26.8 3.8 95 5-104 137-240 (1001)
499 PRK08742 adenosylmethionine--8 38.3 1.4E+02 0.0029 23.0 5.9 54 25-82 107-173 (472)
500 PRK09382 ispDF bifunctional 2- 38.1 22 0.00048 26.4 1.7 34 22-55 321-354 (378)
No 1
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=99.93 E-value=1e-25 Score=162.12 Aligned_cols=108 Identities=55% Similarity=0.868 Sum_probs=98.6
Q ss_pred ChhhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhc--cCCCEEEEcCC
Q psy17798 1 MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYK--EKKKHVITTQT 78 (110)
Q Consensus 1 ~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~--~~g~~vl~~~~ 78 (110)
|.+|++..|+||++ .|.+|+.+.+.++++|+.||+++|++|++|+||+|+||++|+++.+...... ++|.+||++.+
T Consensus 21 m~~~~~~~fgNPsS-~H~~G~~A~~~ve~AR~~iA~llga~~~eIiFTSG~TEsnNlaI~g~~~a~~~~~~~~HIIts~i 99 (386)
T COG1104 21 MLPYLTEVFGNPSS-LHSFGREARKAVEEAREQIAKLLGADPEEIIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAI 99 (386)
T ss_pred HHHHHHhhcCCccc-hhHhHHHHHHHHHHHHHHHHHHhCCCCCeEEEecCCcHHHHHHHHhhHHhhhcccCCCeEEEccc
Confidence 46788889999998 9999999999999999999999999999999999999999999999543221 36889999999
Q ss_pred CChhHHHHHHHHHhCCcEEEEecCCCCcccc
Q psy17798 79 EHKCVLDSCRILEGEGFNVLGSNPGQGGNFL 109 (110)
Q Consensus 79 e~ps~~~~~~~l~~~g~~v~~v~~~~~G~~~ 109 (110)
|||+++.+.+.+++.|++|+++|+|++|.++
T Consensus 100 EH~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~ 130 (386)
T COG1104 100 EHPAVLNTCRYLERQGFEVTYLPVDSNGLVD 130 (386)
T ss_pred ccHHHHHHHHHHHhcCCeEEEeCCCCCCeEc
Confidence 9999999999998889999999999999986
No 2
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.9e-23 Score=151.88 Aligned_cols=107 Identities=25% Similarity=0.361 Sum_probs=98.0
Q ss_pred hhhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCC-CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCC
Q psy17798 2 LPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDP-KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEH 80 (110)
Q Consensus 2 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~-~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ 80 (110)
..|++..++|++++.|..+..+++.++++|+.+|+++|+++ ++|+||+|+|+++|+++.++... +++||+||+++.||
T Consensus 43 ~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~~eIvft~~tT~aln~va~~l~~~-~~~gdeIv~s~~EH 121 (405)
T COG0520 43 AEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDEIVFTRGTTEALNLVARGLGRS-LKPGDEIVVSDLEH 121 (405)
T ss_pred HHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChhHHHHHHHHHhhhh-hcCCCEEEEccCcc
Confidence 46788899999999999999999999999999999999985 99999999999999999999632 37899999999999
Q ss_pred hhHHHHHHHHH-hCCcEEEEecCCCCcccc
Q psy17798 81 KCVLDSCRILE-GEGFNVLGSNPGQGGNFL 109 (110)
Q Consensus 81 ps~~~~~~~l~-~~g~~v~~v~~~~~G~~~ 109 (110)
||+..+|..+. +.|++++++|++++|.++
T Consensus 122 ~sn~~pw~~~~~~~Ga~v~~i~~~~~g~~~ 151 (405)
T COG0520 122 HSNIVPWQELAKRTGAKVRVIPLDDDGLLD 151 (405)
T ss_pred hhhHHHHHHHHHhcCcEEEEEecCCCCCcC
Confidence 99999999995 569999999999888875
No 3
>KOG1549|consensus
Probab=99.89 E-value=1.2e-22 Score=147.15 Aligned_cols=107 Identities=60% Similarity=0.980 Sum_probs=94.8
Q ss_pred ChhhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhcc-CCCEEEEcCCC
Q psy17798 1 MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKE-KKKHVITTQTE 79 (110)
Q Consensus 1 ~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~-~g~~vl~~~~e 79 (110)
|.+|+...++|||+. ..++++...++++|+.+|+++|++|++|+||+||||++|++++++.|.+.+ ...+||+...|
T Consensus 63 m~~~~~~~~~nPh~~--~y~w~~~~~~E~aR~~VAklInAd~~dIiFts~ATEs~Nlvl~~v~~~~~~~~~k~iitl~~e 140 (428)
T KOG1549|consen 63 MLPYLLEYLGNPHSR--SYGWKAEDAVEAAREQVAKLINADPSDIVFTSGATESNNLVLKGVARFFGDKTKKHIITLQTE 140 (428)
T ss_pred HHHHHHHhhcCCCcc--ccchhhhHHHHHHHHHHHHHhCCCCCcEEEeCCchHHHHHHHHHhhccccccccceEEEeccc
Confidence 467999999999984 456788889999999999999999989999999999999999999974432 12299999999
Q ss_pred ChhHHHHHHHHHhCCcEEEEecCCCCcccc
Q psy17798 80 HKCVLDSCRILEGEGFNVLGSNPGQGGNFL 109 (110)
Q Consensus 80 ~ps~~~~~~~l~~~g~~v~~v~~~~~G~~~ 109 (110)
||++..+|..+++.|++|+.+|++.+|.+|
T Consensus 141 H~~v~~s~~~l~~~g~~Vt~lpv~~~~~~d 170 (428)
T KOG1549|consen 141 HPCVLDSCRALQEEGLEVTYLPVEDSGLVD 170 (428)
T ss_pred CcchhHHHHHHHhcCeEEEEeccCcccccc
Confidence 999999999999999999999999888765
No 4
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=99.78 E-value=4e-18 Score=124.40 Aligned_cols=108 Identities=19% Similarity=0.324 Sum_probs=93.3
Q ss_pred hhhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCC-CCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCC
Q psy17798 2 LPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINC-DPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEH 80 (110)
Q Consensus 2 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~-~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ 80 (110)
.+|++..++||+++.|..+....+.++++|+.+|+++++ ++++|+||+|+|+++++++.++....+++||+|++++.||
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~~l~~~~~~~~~~~~~~gd~vl~~~~~~ 123 (406)
T PRK09295 44 AEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISEMEH 123 (406)
T ss_pred HHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECcchh
Confidence 457777778998778888888899999999999999998 6899999999999999999987432347899999999999
Q ss_pred hhHHHHHHHH-HhCCcEEEEecCCCCcccc
Q psy17798 81 KCVLDSCRIL-EGEGFNVLGSNPGQGGNFL 109 (110)
Q Consensus 81 ps~~~~~~~l-~~~g~~v~~v~~~~~G~~~ 109 (110)
|++..+|..+ +..|++++.+|++++|.+|
T Consensus 124 ~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d 153 (406)
T PRK09295 124 HANIVPWQMLCARVGAELRVIPLNPDGTLQ 153 (406)
T ss_pred hHHHHHHHHHHHHcCcEEEEEecCCCCCCC
Confidence 9999888877 5689999999998877654
No 5
>PLN02651 cysteine desulfurase
Probab=99.77 E-value=9.5e-18 Score=120.93 Aligned_cols=108 Identities=69% Similarity=1.055 Sum_probs=92.8
Q ss_pred hhhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCCh
Q psy17798 2 LPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHK 81 (110)
Q Consensus 2 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~p 81 (110)
.+|+...++||+++.|..++...+.++++|+.+++++|+++++|+||+|+|+++++++.++...+.++|++|+++..|||
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~t~~~t~a~~~~l~~~~~~~~~~g~~vl~~~~~h~ 99 (364)
T PLN02651 20 LPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPKEIIFTSGATESNNLAIKGVMHFYKDKKKHVITTQTEHK 99 (364)
T ss_pred HHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhccCCCCEEEEcccccH
Confidence 35666778999975677778888899999999999999999999999999999999988774323368999999999999
Q ss_pred hHHHHHHHHHhCCcEEEEecCCCCcccc
Q psy17798 82 CVLDSCRILEGEGFNVLGSNPGQGGNFL 109 (110)
Q Consensus 82 s~~~~~~~l~~~g~~v~~v~~~~~G~~~ 109 (110)
++...|..++..|++++.+|++++|.+|
T Consensus 100 s~~~~~~~~~~~g~~v~~v~~~~~~~~d 127 (364)
T PLN02651 100 CVLDSCRHLQQEGFEVTYLPVKSDGLVD 127 (364)
T ss_pred HHHHHHHHHHhcCCEEEEEccCCCCcCC
Confidence 9999998887789999999998777654
No 6
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=99.77 E-value=8.2e-18 Score=122.44 Aligned_cols=108 Identities=26% Similarity=0.320 Sum_probs=93.6
Q ss_pred hhhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCC-CCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCC
Q psy17798 2 LPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINC-DPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEH 80 (110)
Q Consensus 2 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~-~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ 80 (110)
.+|+++.++||+++.|..+....+.++++|+.+|+++|+ ++++|+||+|+|++++++++++....+++||+||+++.+|
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~~~~~t~~i~~~~~~~~~~~~~~gd~vl~~~~~~ 119 (401)
T PRK10874 40 QQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAKNIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEH 119 (401)
T ss_pred HHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHhhhccCCCcCEEEECCcch
Confidence 467777789998878888888999999999999999999 7899999999999999999998421137899999999999
Q ss_pred hhHHHHHHHH-HhCCcEEEEecCCCCcccc
Q psy17798 81 KCVLDSCRIL-EGEGFNVLGSNPGQGGNFL 109 (110)
Q Consensus 81 ps~~~~~~~l-~~~g~~v~~v~~~~~G~~~ 109 (110)
|++..+|..+ +..|++++.+|++.+|.+|
T Consensus 120 ~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d 149 (401)
T PRK10874 120 HANLVPWLMVAQQTGAKVVKLPLGADRLPD 149 (401)
T ss_pred HHHHHHHHHHHHHhCCEEEEEecCCCCcCC
Confidence 9998888877 6789999999998777554
No 7
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=99.75 E-value=3.6e-17 Score=119.00 Aligned_cols=108 Identities=24% Similarity=0.282 Sum_probs=91.4
Q ss_pred hhhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCC-CCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCC
Q psy17798 2 LPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINC-DPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEH 80 (110)
Q Consensus 2 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~-~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ 80 (110)
.+|+....+||+++.|..+....+.++++|+.+|+++|+ ++++|+||+|+|+++++++.++....+++||+||+++.+|
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~t~g~t~~l~~~~~~~~~~~~~~gd~Vl~~~~~~ 116 (398)
T TIGR03392 37 QQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAENIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEH 116 (398)
T ss_pred HHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChHHHHHHHHHHhhhccCCCCCEEEECCcch
Confidence 356666778998767888888889999999999999999 4899999999999999999998421127899999999999
Q ss_pred hhHHHHHHHH-HhCCcEEEEecCCCCcccc
Q psy17798 81 KCVLDSCRIL-EGEGFNVLGSNPGQGGNFL 109 (110)
Q Consensus 81 ps~~~~~~~l-~~~g~~v~~v~~~~~G~~~ 109 (110)
|++...|..+ +..|++++.+|++++|.+|
T Consensus 117 ~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~ 146 (398)
T TIGR03392 117 HANLIPWLMVAQQTGAKVVKLPIGADLLPD 146 (398)
T ss_pred hHHHHHHHHHHHHcCcEEEEEecCCCCCcC
Confidence 9988888766 6789999999998776543
No 8
>PRK02948 cysteine desulfurase; Provisional
Probab=99.74 E-value=5.9e-17 Score=117.18 Aligned_cols=107 Identities=29% Similarity=0.421 Sum_probs=93.0
Q ss_pred hhhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCCh
Q psy17798 2 LPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHK 81 (110)
Q Consensus 2 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~p 81 (110)
.+|++..++||++ .|..+......++++|+.+|+++|+++++|+||+|+|++++.++.++...+.++|++|+++..|||
T Consensus 21 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~~~~~~g~~vv~~~~~h~ 99 (381)
T PRK02948 21 QKAASQYFGNESS-LHDIGGTASSLLQVCRKTFAEMIGGEEQGIYFTSGGTESNYLAIQSLLNALPQNKKHIITTPMEHA 99 (381)
T ss_pred HHHHHhcCCCCcc-ccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHHhccCCCCEEEECCcccH
Confidence 4577777899986 788888888999999999999999999999999999999999988875322257899999999999
Q ss_pred hHHHHHHHHHhCCcEEEEecCCCCcccc
Q psy17798 82 CVLDSCRILEGEGFNVLGSNPGQGGNFL 109 (110)
Q Consensus 82 s~~~~~~~l~~~g~~v~~v~~~~~G~~~ 109 (110)
++...+..++..|++++.+|++++|.+|
T Consensus 100 s~~~~~~~~~~~g~~v~~v~~~~~~~~d 127 (381)
T PRK02948 100 SIHSYFQSLESQGYTVTEIPVDKSGLIR 127 (381)
T ss_pred HHHHHHHHHHhCCCEEEEEeeCCCCCCC
Confidence 9999998888889999999998877654
No 9
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=99.74 E-value=5.5e-17 Score=118.40 Aligned_cols=108 Identities=58% Similarity=1.003 Sum_probs=91.8
Q ss_pred hhhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCCh
Q psy17798 2 LPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHK 81 (110)
Q Consensus 2 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~p 81 (110)
.+|+...++||+++.+..++...+.++++|+.+++++|+++++|+||+|+|+++++++.++...+.++|++|+++..+|+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~Vi~~~~~h~ 103 (402)
T TIGR02006 24 MPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGADSREIVFTSGATESNNLAIKGIAHFYKSKGNHIITSKTEHK 103 (402)
T ss_pred HHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEECCCccH
Confidence 35666678999865677777777889999999999999999999999999999999988875322368899999999999
Q ss_pred hHHHHHHHHHhCCcEEEEecCCCCcccc
Q psy17798 82 CVLDSCRILEGEGFNVLGSNPGQGGNFL 109 (110)
Q Consensus 82 s~~~~~~~l~~~g~~v~~v~~~~~G~~~ 109 (110)
++..+|..++..|++++.+|++++|.+|
T Consensus 104 s~~~~~~~~~~~g~~v~~v~~~~~~~~d 131 (402)
T TIGR02006 104 AVLDTCRYLEREGFEVTYLPPKSNGLID 131 (402)
T ss_pred HHHHHHHHHHhcCCEEEEEccCCCCcCC
Confidence 9999998877789999999998877654
No 10
>PLN02724 Molybdenum cofactor sulfurase
Probab=99.74 E-value=1.9e-17 Score=129.87 Aligned_cols=97 Identities=27% Similarity=0.400 Sum_probs=85.6
Q ss_pred hhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCC--cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCC
Q psy17798 3 PYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPK--EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEH 80 (110)
Q Consensus 3 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~--~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ 80 (110)
+|+.+.++||++ .|..+..+.+.++++|+.+|+++|++++ +|+||+|+|+|+|+++.++.+ ++||+||++..||
T Consensus 57 ~~~~~~~~np~s-~~~~s~~~~~~~e~aR~~ia~~lga~~~~~~VvFtsnaT~alnlva~~l~~---~~gd~Iv~t~~eH 132 (805)
T PLN02724 57 DFSSNVYGNPHS-QSDSSMRSSDTIESARQQVLEYFNAPPSDYACVFTSGATAALKLVGETFPW---SSESHFCYTLENH 132 (805)
T ss_pred HHHhhccCCCCc-CcchhhhHHHHHHHHHHHHHHHhCCCccceEEEEeCChHHHHHHHHHHCCC---CCCCeEEEeeccc
Confidence 466678899996 7888888999999999999999999765 589999999999999999863 7899999999999
Q ss_pred hhHHHHHHHHHhCCcEEEEecCC
Q psy17798 81 KCVLDSCRILEGEGFNVLGSNPG 103 (110)
Q Consensus 81 ps~~~~~~~l~~~g~~v~~v~~~ 103 (110)
+++..+|...++.|++++++|++
T Consensus 133 ~svl~~~~~a~~~G~~v~~v~~~ 155 (805)
T PLN02724 133 NSVLGIREYALEKGAAAIAVDIE 155 (805)
T ss_pred cchHHHHHHHHHcCCeEEeccch
Confidence 99987665557789999999987
No 11
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=99.73 E-value=1.3e-16 Score=115.31 Aligned_cols=106 Identities=45% Similarity=0.738 Sum_probs=90.7
Q ss_pred hhhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCCh
Q psy17798 2 LPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHK 81 (110)
Q Consensus 2 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~p 81 (110)
.+|+.+.++||++ .+..+....+.++++|+.+++++|+++++|+||+|+|+++++++.++... ..++++|+++..|||
T Consensus 20 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~t~~~t~a~~~al~~~~~~-~~~~~~vv~~~~~~~ 97 (379)
T TIGR03402 20 LPYFTEYFGNPSS-MHSFGGEVGKAVEEAREQVAKLLGAEPDEIIFTSGGTESDNTAIKSALAA-QPEKRHIITTAVEHP 97 (379)
T ss_pred HHHHHhcCCCCCc-ccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHHh-cCCCCeEEEcccccH
Confidence 3566667799996 77777788889999999999999999999999999999999999886421 145789999999999
Q ss_pred hHHHHHHHHHhCCcEEEEecCCCCcccc
Q psy17798 82 CVLDSCRILEGEGFNVLGSNPGQGGNFL 109 (110)
Q Consensus 82 s~~~~~~~l~~~g~~v~~v~~~~~G~~~ 109 (110)
++..+|..++..|++++.+|++++|.+|
T Consensus 98 s~~~~~~~~~~~G~~v~~v~~~~~g~~~ 125 (379)
T TIGR03402 98 AVLSLCQHLEKQGYKVTYLPVDEEGRLD 125 (379)
T ss_pred HHHHHHHHHHHcCCEEEEEccCCCCcCC
Confidence 9999998887789999999998877654
No 12
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=99.72 E-value=1.8e-16 Score=116.32 Aligned_cols=108 Identities=23% Similarity=0.240 Sum_probs=90.3
Q ss_pred hhhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCC-CCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCC
Q psy17798 2 LPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCD-PKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEH 80 (110)
Q Consensus 2 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~-~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ 80 (110)
.+|+++..+||+++.|..+....+.++++|+.+|++++++ +++|+||+|+|++++++++++....+++|++|+++..||
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~al~~i~~~~~~~~~~~gd~vl~~~~~~ 132 (424)
T PLN02855 53 QDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINASTSREIVFTRNATEAINLVAYTWGLANLKPGDEVILSVAEH 132 (424)
T ss_pred HHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECCCcc
Confidence 3566677789887677777777788999999999999995 689999999999999999876322237899999999999
Q ss_pred hhHHHHHHHH-HhCCcEEEEecCCCCcccc
Q psy17798 81 KCVLDSCRIL-EGEGFNVLGSNPGQGGNFL 109 (110)
Q Consensus 81 ps~~~~~~~l-~~~g~~v~~v~~~~~G~~~ 109 (110)
|+....|..+ +..|++++.+|+++++.+|
T Consensus 133 ~s~~~~~~~~a~~~g~~v~~v~~~~~~~~~ 162 (424)
T PLN02855 133 HSNIVPWQLVAQKTGAVLKFVGLTPDEVLD 162 (424)
T ss_pred HHHHHHHHHHHHHcCCEEEEEecCCCCCcC
Confidence 9999888887 6789999999998766543
No 13
>PRK14012 cysteine desulfurase; Provisional
Probab=99.72 E-value=1.9e-16 Score=115.57 Aligned_cols=107 Identities=58% Similarity=0.996 Sum_probs=90.6
Q ss_pred hhhh--hhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCC
Q psy17798 3 PYLT--NAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEH 80 (110)
Q Consensus 3 ~~~~--~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ 80 (110)
+|+. ..++||+++.+..++...+.++++|+.+|+++|+++++|+||+|+|+++++++.++.....++||+|+++..+|
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~~~~v~~~~g~t~al~~~l~~l~~~~~~~gd~Vi~~~~~~ 104 (404)
T PRK14012 25 PYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGADPREIVFTSGATESDNLAIKGAAHFYQKKGKHIITSKTEH 104 (404)
T ss_pred HHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcCeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEEecCcc
Confidence 4555 56789987566666666788999999999999999999999999999999999887522236899999999999
Q ss_pred hhHHHHHHHHHhCCcEEEEecCCCCcccc
Q psy17798 81 KCVLDSCRILEGEGFNVLGSNPGQGGNFL 109 (110)
Q Consensus 81 ps~~~~~~~l~~~g~~v~~v~~~~~G~~~ 109 (110)
|++..+|..++..|++++.++++++|.+|
T Consensus 105 ~s~~~~~~~~~~~g~~~~~v~~~~~g~~d 133 (404)
T PRK14012 105 KAVLDTCRQLEREGFEVTYLDPQSNGIID 133 (404)
T ss_pred HHHHHHHHHHHhCCCEEEEEccCCCCcCC
Confidence 99999998887789999999999888654
No 14
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=99.72 E-value=2.2e-16 Score=114.89 Aligned_cols=107 Identities=24% Similarity=0.343 Sum_probs=91.1
Q ss_pred hhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCC-CCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCCh
Q psy17798 3 PYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCD-PKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHK 81 (110)
Q Consensus 3 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~-~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~p 81 (110)
+++++.++||+++.+..+......++++|+.+|+++|++ +++|+||+|+|+++++++.++....+++|++|++++.+||
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~~~~~v~~~~g~t~~l~~~~~~~~~~~~~~g~~vl~~~~~~~ 119 (403)
T TIGR01979 40 EYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAASDEEIVFTRGTTESINLVAYSWGDSNLKAGDEIVISEMEHH 119 (403)
T ss_pred HHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHHhhhhcCCCCCEEEECcchhh
Confidence 566677789987667777777889999999999999997 7899999999999999999874322378999999999999
Q ss_pred hHHHHHHHH-HhCCcEEEEecCCCCcccc
Q psy17798 82 CVLDSCRIL-EGEGFNVLGSNPGQGGNFL 109 (110)
Q Consensus 82 s~~~~~~~l-~~~g~~v~~v~~~~~G~~~ 109 (110)
++...|..+ +..|++++.+|++++|.++
T Consensus 120 s~~~~~~~~~~~~g~~~~~v~~~~~~~~~ 148 (403)
T TIGR01979 120 ANIVPWQLLAERTGATLKFIPLDDDGTLD 148 (403)
T ss_pred HHHHHHHHHHHhcCcEEEEEecCCCCCCC
Confidence 998888877 5689999999999877654
No 15
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=99.71 E-value=8.5e-17 Score=116.10 Aligned_cols=107 Identities=28% Similarity=0.386 Sum_probs=94.6
Q ss_pred hhhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCC-CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCC
Q psy17798 2 LPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDP-KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEH 80 (110)
Q Consensus 2 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~-~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ 80 (110)
.+++.+.++||+++.+..+....+.++++|+.+|+++|+++ ++|+||+|+|++++.++.++... +++|++|+++..||
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~l~~~-~~~g~~vl~~~~~~ 98 (371)
T PF00266_consen 20 SDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAPPDEEVVFTSNGTEALNAVASSLLNP-LKPGDEVLVTSNEH 98 (371)
T ss_dssp HHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHHHHHH-GTTTCEEEEEESSH
T ss_pred HHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCccccccccccccchhhhhhhhccccc-cccccccccccccc
Confidence 45677789999777788888889999999999999999988 89999999999999999999422 38999999999999
Q ss_pred hhHHHHHHHH-HhCCcEEEEecCCCCcccc
Q psy17798 81 KCVLDSCRIL-EGEGFNVLGSNPGQGGNFL 109 (110)
Q Consensus 81 ps~~~~~~~l-~~~g~~v~~v~~~~~G~~~ 109 (110)
|+...+|..+ ++.|++++++|.+.+|.+|
T Consensus 99 ~s~~~~~~~~~~~~g~~v~~i~~~~~~~~~ 128 (371)
T PF00266_consen 99 PSNRYPWEEIAKRKGAEVRVIPADPGGSLD 128 (371)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEEEGTTSSCS
T ss_pred cccccccccccccchhhhccccccccchhh
Confidence 9999999998 4789999999998877654
No 16
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=99.71 E-value=2.7e-16 Score=113.90 Aligned_cols=107 Identities=37% Similarity=0.515 Sum_probs=90.9
Q ss_pred hhhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCC-CCCcEEEeCChHHHHHHHHHHhHHhhc-cC-CCEEEEcCC
Q psy17798 2 LPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINC-DPKEIIFTSGATESNNIAVKGVARFYK-EK-KKHVITTQT 78 (110)
Q Consensus 2 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~-~~~~i~~t~gat~a~~~i~~~l~~~~~-~~-g~~vl~~~~ 78 (110)
.+|+.+.++||++ .|..+......+.++|+.+++++++ ++++|+||+|+|++++++++++.+..+ ++ +++|+++..
T Consensus 20 ~~~~~~~~~n~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~i~~t~g~teal~~~~~~~~~~~~~~~~~~~vi~~~~ 98 (382)
T TIGR03403 20 DPFFCDIYGNPNS-LHQFGTATHPAIAEALDKLYKGINARDLDDIIITSCATESNNWVLKGVYFDEILKGGKNHIITTEV 98 (382)
T ss_pred HHHHHhcCcCCcc-ccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHHHHHhhcccCCCCEEEEcCC
Confidence 4677778899996 7888878888999999999999998 789999999999999999998743111 34 578999999
Q ss_pred CChhHHHHHHHHHhCCcEEEEecCCCCcccc
Q psy17798 79 EHKCVLDSCRILEGEGFNVLGSNPGQGGNFL 109 (110)
Q Consensus 79 e~ps~~~~~~~l~~~g~~v~~v~~~~~G~~~ 109 (110)
|||++..++..++..|++++.+|++++|.+|
T Consensus 99 e~ps~~~~~~~~~~~G~~v~~v~~~~~g~~d 129 (382)
T TIGR03403 99 EHPAVRATCAFLESLGVEVTYLPINEQGTIT 129 (382)
T ss_pred ccHHHHHHHHHHHHCCCEEEEEecCCCCCCC
Confidence 9999999998888889999999998877654
No 17
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=99.71 E-value=3.2e-16 Score=112.36 Aligned_cols=108 Identities=47% Similarity=0.738 Sum_probs=89.8
Q ss_pred hhhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCC-CEEEEcCCCC
Q psy17798 2 LPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKK-KHVITTQTEH 80 (110)
Q Consensus 2 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g-~~vl~~~~e~ 80 (110)
.+++...++||++..+.++....+.++++|+.+|+++++++++|+||+|+|++++.++.++.....++| ++|+++..||
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~~vi~~~~~~ 98 (353)
T TIGR03235 19 LPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGADTEEVIFTSGATESNNLAILGLARAGEQKGKKHIITSAIEH 98 (353)
T ss_pred HHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhcccCCCCeeeEccccc
Confidence 345555678998755677777788899999999999999999999999999999999988752111345 7899999999
Q ss_pred hhHHHHHHHHHhCCcEEEEecCCCCcccc
Q psy17798 81 KCVLDSCRILEGEGFNVLGSNPGQGGNFL 109 (110)
Q Consensus 81 ps~~~~~~~l~~~g~~v~~v~~~~~G~~~ 109 (110)
|++..+|..++..|++++.+|++++|.+|
T Consensus 99 ~s~~~~~~~~~~~G~~v~~v~~~~~~~~d 127 (353)
T TIGR03235 99 PAVLEPIRALERNGFTVTYLPVDESGRID 127 (353)
T ss_pred HHHHHHHHHHHhcCCEEEEEccCCCCcCC
Confidence 99999998887789999999998777554
No 18
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=99.66 E-value=2.7e-15 Score=108.05 Aligned_cols=106 Identities=27% Similarity=0.382 Sum_probs=90.5
Q ss_pred hhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCC-CCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCCh
Q psy17798 3 PYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCD-PKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHK 81 (110)
Q Consensus 3 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~-~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~p 81 (110)
++++..++||+++.+..+....+.+.++|+.++++++++ +++|++|+|+|+++++++.++.... .+|++|++++.+|+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l~~~~-~~g~~vl~~~~~~~ 99 (373)
T cd06453 21 DYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGLGRAN-KPGDEIVTSVMEHH 99 (373)
T ss_pred HHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHhhhcC-CCCCEEEECcchhH
Confidence 566677899998778888888899999999999999997 8899999999999999999987200 18999999999999
Q ss_pred hHHHHHHHH-HhCCcEEEEecCCCCcccc
Q psy17798 82 CVLDSCRIL-EGEGFNVLGSNPGQGGNFL 109 (110)
Q Consensus 82 s~~~~~~~l-~~~g~~v~~v~~~~~G~~~ 109 (110)
+...++..+ +..|++++.||++.+|.+|
T Consensus 100 ~~~~~~~~~~~~~g~~~~~v~~~~~~~~d 128 (373)
T cd06453 100 SNIVPWQQLAERTGAKLKVVPVDDDGQLD 128 (373)
T ss_pred HHHHHHHHHHhhcCcEEEEeecCCCCCcC
Confidence 988777766 4679999999998777554
No 19
>PLN03032 serine decarboxylase; Provisional
Probab=99.65 E-value=9.1e-16 Score=111.54 Aligned_cols=103 Identities=17% Similarity=0.200 Sum_probs=87.9
Q ss_pred ChhhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcE--EEeCChHHHHHHHHHHhHHhhccCCCEEEEcCC
Q psy17798 1 MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEI--IFTSGATESNNIAVKGVARFYKEKKKHVITTQT 78 (110)
Q Consensus 1 ~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i--~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~ 78 (110)
|.+|+.+.++||++ .|..|..+.+..+++++.+|+++|++++++ +||+|+|||++..+.+... . .++++|+++..
T Consensus 43 ~~~~~~~~~gnP~s-~~~~g~~a~~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al~~ar~-~-~~~~~vi~s~~ 119 (374)
T PLN03032 43 LMKYSINNLGDPFI-ESNYGVHSRQFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGILVGRE-V-FPDGILYASRE 119 (374)
T ss_pred HHHhcccCCCCCcc-cCCCCccHHHHHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHHHHHHH-h-CCCcEEEeCCC
Confidence 34677778999998 899999999999999999999999999887 9999999999988776532 1 35568999999
Q ss_pred CChhHHHHHHHHHhCCcEEEEecCCCCcccc
Q psy17798 79 EHKCVLDSCRILEGEGFNVLGSNPGQGGNFL 109 (110)
Q Consensus 79 e~ps~~~~~~~l~~~g~~v~~v~~~~~G~~~ 109 (110)
+|+|+..+++.+ |++++.||+|++|.+|
T Consensus 120 ~H~Sv~kaa~~l---g~~~~~V~~d~~g~id 147 (374)
T PLN03032 120 SHYSVFKAARMY---RMEAVKVPTLPSGEID 147 (374)
T ss_pred ceeHHHHHHHHc---CCCCeEeeeCCCCcCc
Confidence 999999887654 6778899999999886
No 20
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=99.50 E-value=5.4e-13 Score=96.13 Aligned_cols=102 Identities=30% Similarity=0.413 Sum_probs=82.6
Q ss_pred hhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCC-CCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChh
Q psy17798 4 YLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCD-PKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKC 82 (110)
Q Consensus 4 ~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~-~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps 82 (110)
+++...+|++.+.|..+....+.++++|+.++++++++ +++|+||+|+++++++++.++. ++||+|+++..+|++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~----~~gd~vl~~~~~~~~ 98 (376)
T TIGR01977 23 FYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALKGLL----KEGDHVITTPMEHNS 98 (376)
T ss_pred HHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHhcc----CCCCEEEECcchhhH
Confidence 44444456765455555555688999999999999985 4599999999999999998865 799999999999999
Q ss_pred HHHHHHHH-HhCCcEEEEecCCCCcccc
Q psy17798 83 VLDSCRIL-EGEGFNVLGSNPGQGGNFL 109 (110)
Q Consensus 83 ~~~~~~~l-~~~g~~v~~v~~~~~G~~~ 109 (110)
+..+|..+ +..|++++.++.+++|.+|
T Consensus 99 ~~~~~~~~~~~~g~~~~~v~~~~~~~~d 126 (376)
T TIGR01977 99 VARPLECLKEQIGVEITIVKCDNEGLIS 126 (376)
T ss_pred HHHHHHHHHHHcCcEEEEEecCCCCCcC
Confidence 98888776 5569999999998777554
No 21
>PRK02769 histidine decarboxylase; Provisional
Probab=99.50 E-value=1.2e-13 Score=100.80 Aligned_cols=101 Identities=20% Similarity=0.150 Sum_probs=81.4
Q ss_pred hhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcE--EEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCC
Q psy17798 3 PYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEI--IFTSGATESNNIAVKGVARFYKEKKKHVITTQTEH 80 (110)
Q Consensus 3 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i--~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ 80 (110)
.++.+.++||++ .+..+..+.+..+++++.+|+++|++++++ +||+|+||+++..+..... +.++++|++++.||
T Consensus 44 ~~~~~n~gnp~~-~~~~g~~~~~~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~--~~~~~~ii~s~~~H 120 (380)
T PRK02769 44 SFSINNCGDPYS-KSNYPLNSFDFERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLARE--LFPDGTLYYSKDTH 120 (380)
T ss_pred HhhhccCCCccc-cCCCCCChHHHHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHHHHHH--hCCCcEEEeCCCce
Confidence 455567899987 788787788899999999999999987775 8999999997765544321 25788999999999
Q ss_pred hhHHHHHHHHHhCCcEEEEecCCCCcccc
Q psy17798 81 KCVLDSCRILEGEGFNVLGSNPGQGGNFL 109 (110)
Q Consensus 81 ps~~~~~~~l~~~g~~v~~v~~~~~G~~~ 109 (110)
+|+..+++.+ |++...||++++|.+|
T Consensus 121 ~Sv~ka~~~l---g~~~~~V~~~~~g~id 146 (380)
T PRK02769 121 YSVSKIARLL---RIKSRVITSLPNGEID 146 (380)
T ss_pred ehHHHHHHHc---CCCCceeccCCCCcCc
Confidence 9999888665 6667788888888765
No 22
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=99.50 E-value=7.2e-13 Score=96.25 Aligned_cols=105 Identities=24% Similarity=0.344 Sum_probs=83.8
Q ss_pred hhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChh
Q psy17798 3 PYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKC 82 (110)
Q Consensus 3 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps 82 (110)
+++.....|++. .|.......+.++++|+.+++++|+++++|++++|+++++++++.++.. ..++||+|++++.+|++
T Consensus 39 ~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~ia~~~~~~~~~v~~~~~~t~~l~~~~~~~~~-~~~~gd~vl~~~~~~~s 116 (397)
T TIGR01976 39 AALTRSNANRGG-AYESSRRADQVVDDAREAVADLLNADPPEVVFGANATSLTFLLSRAISR-RWGPGDEVIVTRLDHEA 116 (397)
T ss_pred HHHHhcCCCCCC-CchHHHHHHHHHHHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHHHHHh-cCCCCCEEEEcCCchHh
Confidence 344445567764 5666556667899999999999999888999999999999998888731 12789999999999999
Q ss_pred HHHHHHHH-HhCCcEEEEecCCC-Ccccc
Q psy17798 83 VLDSCRIL-EGEGFNVLGSNPGQ-GGNFL 109 (110)
Q Consensus 83 ~~~~~~~l-~~~g~~v~~v~~~~-~G~~~ 109 (110)
+...|..+ +..|++++.+++++ +|.++
T Consensus 117 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 145 (397)
T TIGR01976 117 NISPWLQAAERAGAKVKWARVDEATGELH 145 (397)
T ss_pred HHHHHHHHHHhcCCEEEEEeccccCCCcC
Confidence 98888665 67899999999886 45443
No 23
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=99.41 E-value=7e-13 Score=98.46 Aligned_cols=102 Identities=16% Similarity=0.133 Sum_probs=84.1
Q ss_pred hhhhhhc--CCCCCcCChHHHHHHHHHHH-HHHHHHHHhCCCCCcEEEe---CChHHHHHHHHHHhHHhhccCCCEEEEc
Q psy17798 3 PYLTNAY--GNPHSRTHAYGWESEKAVED-ARQEIATLINCDPKEIIFT---SGATESNNIAVKGVARFYKEKKKHVITT 76 (110)
Q Consensus 3 ~~~~~~~--~n~~~~~~~~~~~~~~~~~~-~R~~la~~l~~~~~~i~~t---~gat~a~~~i~~~l~~~~~~~g~~vl~~ 76 (110)
+.+.+.| +||++ .|..|.+..+.+++ +|+.+++++++++++++++ +|++++++.++.++. ++||+|+++
T Consensus 56 ~~l~~~y~~g~p~s-~~~~g~~~~~~iE~~ar~~~a~lf~a~~~~~~~~~~~~sgt~an~~v~~al~----~~gd~Ii~~ 130 (452)
T PTZ00094 56 SCFTNKYAEGLPGN-RYYGGNEVVDKIENLCQKRALEAFGLDPEEWGVNVQPYSGSPANFAVYTALL----QPHDRIMGL 130 (452)
T ss_pred chhhccccCCCCCc-cccccchHHHHHHHHHHHHHHHHhCCCcccceeecCCCchHHHHHHHHHHhc----CCCCEEEec
Confidence 4455666 99997 78999998899995 9999999999999998888 899999999999986 899999999
Q ss_pred CCCChhHHHHHHHHHh-------CCcEEEEecCCCCcccc
Q psy17798 77 QTEHKCVLDSCRILEG-------EGFNVLGSNPGQGGNFL 109 (110)
Q Consensus 77 ~~e~ps~~~~~~~l~~-------~g~~v~~v~~~~~G~~~ 109 (110)
..||+++..++..+++ .++++..++++++|.+|
T Consensus 131 ~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~id 170 (452)
T PTZ00094 131 DLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNEKGLID 170 (452)
T ss_pred ccccCCcccccccccccccccceeeeeeeecccCCCCCcC
Confidence 9999999888755421 12456677788778776
No 24
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=99.40 E-value=5.4e-13 Score=99.36 Aligned_cols=82 Identities=21% Similarity=0.362 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHHHhC------CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhC
Q psy17798 20 GWESEKAVEDARQEIATLIN------CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGE 93 (110)
Q Consensus 20 ~~~~~~~~~~~R~~la~~l~------~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~ 93 (110)
.+....+..++|+.+++++. |++++|++|+|+++|++++++.+. ++||.|++ |.|+|..+...++..
T Consensus 127 ~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~al~l~~~~l~----~pGd~v~v---E~PtY~~~~~~~~~~ 199 (459)
T COG1167 127 QYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGAQQALDLLLRLLL----DPGDTVLV---EDPTYPGALQALEAL 199 (459)
T ss_pred cCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHHHHHHHHHHHhC----CCCCEEEE---cCCCcHHHHHHHHHc
Confidence 33444688899999999873 678999999999999999999987 89999995 888888888888999
Q ss_pred CcEEEEecCCCCccc
Q psy17798 94 GFNVLGSNPGQGGNF 108 (110)
Q Consensus 94 g~~v~~v~~~~~G~~ 108 (110)
|+++..||+|++|+.
T Consensus 200 g~~~~~vp~d~~G~~ 214 (459)
T COG1167 200 GARVIPVPVDEDGID 214 (459)
T ss_pred CCcEEecCCCCCCCC
Confidence 999999999999875
No 25
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=99.35 E-value=2.4e-12 Score=92.90 Aligned_cols=99 Identities=18% Similarity=0.124 Sum_probs=75.1
Q ss_pred hhhhhhhcCCCCCcCChHH---HHHHHHHHHHHHHHHHHhCC-CCCcEEEeCC-hHHHHHHHHHHhHHhhccCCCEEEEc
Q psy17798 2 LPYLTNAYGNPHSRTHAYG---WESEKAVEDARQEIATLINC-DPKEIIFTSG-ATESNNIAVKGVARFYKEKKKHVITT 76 (110)
Q Consensus 2 ~~~~~~~~~n~~~~~~~~~---~~~~~~~~~~R~~la~~l~~-~~~~i~~t~g-at~a~~~i~~~l~~~~~~~g~~vl~~ 76 (110)
.+||.+.. |+++|.|..+ .+..+.++++|+.+++++++ ++++|+||+| +|++++.++.++... .+++++|++.
T Consensus 19 ~~~~~~~~-~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~~l~~~-~~~~~~i~~g 96 (355)
T cd00611 19 QKELLDFN-GLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVPLNLLGD-KGTADYVVTG 96 (355)
T ss_pred HHHHhhcc-cCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCCC-CCeEEEEECC
Confidence 35565544 9999888888 56778999999999999998 5788999988 999999999998621 1367778764
Q ss_pred CCCChhHHHHHHHHHhCCcEEEEecCCCCc
Q psy17798 77 QTEHKCVLDSCRILEGEGFNVLGSNPGQGG 106 (110)
Q Consensus 77 ~~e~ps~~~~~~~l~~~g~~v~~v~~~~~G 106 (110)
..+|.+ .+..++.|++++.++.+++|
T Consensus 97 ~~~~~~----~~~a~~~g~~~~~~~~~~~g 122 (355)
T cd00611 97 AWSAKA----AKEAKRYGGVVVIVAAKEEG 122 (355)
T ss_pred HHHHHH----HHHHHhcCCCcEEEeccccc
Confidence 444333 22336779999999987544
No 26
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase. This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).
Probab=99.30 E-value=1.9e-11 Score=90.48 Aligned_cols=100 Identities=10% Similarity=0.030 Sum_probs=75.6
Q ss_pred hhhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCC-C-CcEEE--eCChHHHHHHHHHHhHHhhc----c-----
Q psy17798 2 LPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCD-P-KEIIF--TSGATESNNIAVKGVARFYK----E----- 68 (110)
Q Consensus 2 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~-~-~~i~~--t~gat~a~~~i~~~l~~~~~----~----- 68 (110)
.+++.+.++||++ . +... +.++++|+.+|+++|++ + +++.| |+|+|||+++++.+...... +
T Consensus 62 ~~~l~~~~~np~s-~---~~~~-~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~g~~~ 136 (431)
T TIGR01788 62 DETINKNMIDKDE-Y---PQTA-EIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAGKPT 136 (431)
T ss_pred HHHHhcCCCCccc-C---ccHH-HHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4566667789985 2 3344 79999999999999997 4 57776 79999999999877542110 1
Q ss_pred CCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCC-cccc
Q psy17798 69 KKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQG-GNFL 109 (110)
Q Consensus 69 ~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~-G~~~ 109 (110)
.+.+|+++..||+|+..+.+. .|++++.||+|++ |.+|
T Consensus 137 ~~~~ii~s~~~H~sv~ka~~~---lg~~v~~i~~d~~~~~vd 175 (431)
T TIGR01788 137 DKPNLVMGSNVQVCWEKFARY---FDVELREVPMDPGRYVID 175 (431)
T ss_pred CCcEEEEcCcchHHHHHHHHH---cCceeEEEecCCCceeeC
Confidence 124899999999999877654 4899999999986 4554
No 27
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=99.29 E-value=1.8e-11 Score=87.77 Aligned_cols=76 Identities=13% Similarity=0.062 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCCc
Q psy17798 27 VEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQGG 106 (110)
Q Consensus 27 ~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~G 106 (110)
.+++|+++|+++++++++|++|+|++++++++++++. ++||+|++++..|+.+... .+..|++++.+|+++++
T Consensus 62 ~~~lr~aia~~~~~~~~~I~it~G~~~al~~~~~~l~----~~gd~vlv~~P~y~~~~~~---~~~~g~~~~~v~~~~~~ 134 (353)
T PRK05387 62 ADALRQAIAAYYGLDPEQVFVGNGSDEVLAHAFLAFF----NHDRPLLFPDITYSFYPVY---AGLYGIPYEEIPLDDDF 134 (353)
T ss_pred HHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhc----CCCCEEEEeCCCHHHHHHH---HHHcCCEEEEeecCCCC
Confidence 4689999999999999999999999999999999987 8999999887777655433 35579999999998776
Q ss_pred ccc
Q psy17798 107 NFL 109 (110)
Q Consensus 107 ~~~ 109 (110)
.+|
T Consensus 135 ~~d 137 (353)
T PRK05387 135 SID 137 (353)
T ss_pred CCC
Confidence 544
No 28
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=99.27 E-value=5.1e-11 Score=86.85 Aligned_cols=97 Identities=18% Similarity=0.170 Sum_probs=76.8
Q ss_pred hhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChh
Q psy17798 3 PYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKC 82 (110)
Q Consensus 3 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps 82 (110)
+|. ..++||++-.|..+....+.+.++|+.+|+++|++ +++||+|++++++.++.++. ++||+|+++..+|++
T Consensus 42 ~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g~~--~~~~~~g~t~a~~~al~~l~----~~gd~Vlv~~~~h~s 114 (387)
T PRK09331 42 EYG-DGYSVCDYCPGRLDQIKKPPIADFHEDLAEFLGMD--EARVTHGAREGKFAVMHSLC----KKGDYVVLDGLAHYT 114 (387)
T ss_pred HHH-hccCCCcccccccccccChHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHhc----CCCCEEEECCCchHH
Confidence 344 35567753235556666678999999999999984 58899999999999999986 799999999999999
Q ss_pred HHHHHHHHHhCCcEEEEecC--CCCcccc
Q psy17798 83 VLDSCRILEGEGFNVLGSNP--GQGGNFL 109 (110)
Q Consensus 83 ~~~~~~~l~~~g~~v~~v~~--~~~G~~~ 109 (110)
.... ++..|++++.+|+ +++|.+|
T Consensus 115 ~~~~---~~~~G~~~~~v~~~~~~~~~~d 140 (387)
T PRK09331 115 SYVA---AERAGLNVREVPKTGYPEYKIT 140 (387)
T ss_pred HHHH---HHHcCCEEEEEeCccCcCCCcC
Confidence 8754 3557999999998 5556544
No 29
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=99.26 E-value=1.2e-11 Score=90.48 Aligned_cols=76 Identities=8% Similarity=0.166 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccC---CCEEEEcCCCChhHHHHHHHH-HhCCcEE----EE
Q psy17798 28 EDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEK---KKHVITTQTEHKCVLDSCRIL-EGEGFNV----LG 99 (110)
Q Consensus 28 ~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~---g~~vl~~~~e~ps~~~~~~~l-~~~g~~v----~~ 99 (110)
.+.++.+ +++|++|++|+||+|+|+++++++.++. ++ +++|+++..|||++..+|... ++.|+++ +.
T Consensus 73 ~~~~~~~-~l~g~~~~~v~~~~~~t~~l~~~~~~~~----~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~ 147 (406)
T TIGR01814 73 DESLLKL-RLVGAKEDEVVVMNTLTINLHLLLASFY----KPTPKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQ 147 (406)
T ss_pred hhhhccc-cccCCCCCcEEEeCCchHHHHHHHHHhc----CCcCCccEEEecCCCCChHHHHHHHHHHhcCCCcccceEE
Confidence 3444446 8999999999999999999999999874 33 347899899999999988754 6678887 56
Q ss_pred ecCCCCccc
Q psy17798 100 SNPGQGGNF 108 (110)
Q Consensus 100 v~~~~~G~~ 108 (110)
++.+++|.+
T Consensus 148 ~~~~~~g~~ 156 (406)
T TIGR01814 148 IEPREEETL 156 (406)
T ss_pred eccCCCCcc
Confidence 777665554
No 30
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=99.24 E-value=6.6e-11 Score=85.29 Aligned_cols=90 Identities=18% Similarity=0.174 Sum_probs=72.0
Q ss_pred hcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHH
Q psy17798 8 AYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSC 87 (110)
Q Consensus 8 ~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~ 87 (110)
.++||+...+..+....+.+.++++.+|+++|+ +++++|+|++++++.++.++. ++||+|+++..+|.+....
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~--~~i~~~~g~t~al~~~l~~~~----~~gd~Vl~~~~~~~~~~~~- 99 (361)
T cd06452 27 GYSVCDFCRGRLDEIEKPPIKDFHHDLAEFLGM--DEARVTPGAREGKFAVMHSLC----EKGDWVVVDGLAHYTSYVA- 99 (361)
T ss_pred ccCCccccccccccccCchHHHHHHHHHHHcCC--ceEEEeCCHHHHHHHHHHHhc----CCCCEEEEcCCcchHHHHH-
Confidence 456665423344444456789999999999998 789999999999999999886 7999999998888887643
Q ss_pred HHHHhCCcEEEEecCCCCc
Q psy17798 88 RILEGEGFNVLGSNPGQGG 106 (110)
Q Consensus 88 ~~l~~~g~~v~~v~~~~~G 106 (110)
++..|++++.+|++.+|
T Consensus 100 --~~~~g~~~~~v~~~~~~ 116 (361)
T cd06452 100 --AERAGLNVREVPNTGHP 116 (361)
T ss_pred --HHhcCCEEEEEecCCCC
Confidence 45679999999998764
No 31
>PRK09105 putative aminotransferase; Provisional
Probab=99.23 E-value=7.7e-11 Score=85.53 Aligned_cols=76 Identities=16% Similarity=0.144 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCCc
Q psy17798 27 VEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQGG 106 (110)
Q Consensus 27 ~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~G 106 (110)
..++|+.+|+++++++++|++|+|+++++++++.++. ++||+|++++..|+.+.. ..+..|++++.+|.++++
T Consensus 80 ~~~Lr~aia~~~~v~~e~I~it~Gs~~ai~~~~~~l~----~~gd~Vli~~P~y~~~~~---~~~~~g~~~~~v~~~~~~ 152 (370)
T PRK09105 80 EDDLRTLFAAQEGLPADHVMAYAGSSEPLNYAVLAFT----SPTAGLVTADPTYEAGWR---AADAQGAPVAKVPLRADG 152 (370)
T ss_pred HHHHHHHHHHHhCcChhhEEEcCChHHHHHHHHHHHc----CCCCEEEEeCCChHHHHH---HHHHcCCeEEEecCCCCC
Confidence 6789999999999999999999999999999999887 799999998877777654 345679999999998765
Q ss_pred ccc
Q psy17798 107 NFL 109 (110)
Q Consensus 107 ~~~ 109 (110)
.+|
T Consensus 153 ~~d 155 (370)
T PRK09105 153 AHD 155 (370)
T ss_pred CCC
Confidence 443
No 32
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=99.22 E-value=8.5e-11 Score=84.64 Aligned_cols=75 Identities=11% Similarity=0.071 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCC-CEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCC
Q psy17798 27 VEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKK-KHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQG 105 (110)
Q Consensus 27 ~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g-~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~ 105 (110)
..++|+++|+++++++++|++|+|++++++++++++. ++| |+|++....|+.+.. ..+..|++++.+|++++
T Consensus 62 ~~~Lr~aia~~~~~~~~~I~it~Gs~~~i~~~~~~~~----~~g~d~vlv~~P~y~~y~~---~~~~~g~~v~~v~~~~~ 134 (354)
T PRK04635 62 PPELINAYSAYAGVAPEQILTSRGADEAIELLIRAFC----EPGQDSIACFGPTYGMYAI---SAETFNVGVKALPLTAD 134 (354)
T ss_pred HHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHHhc----CCCCCeEEEcCCChHHHHH---HHHHcCCEEEEEecCCC
Confidence 5789999999999999999999999999999999887 677 899986666655443 33567999999999865
Q ss_pred ccc
Q psy17798 106 GNF 108 (110)
Q Consensus 106 G~~ 108 (110)
+.+
T Consensus 135 ~~~ 137 (354)
T PRK04635 135 YQL 137 (354)
T ss_pred CCC
Confidence 544
No 33
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=99.21 E-value=9.5e-11 Score=84.29 Aligned_cols=76 Identities=16% Similarity=0.137 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCCc
Q psy17798 27 VEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQGG 106 (110)
Q Consensus 27 ~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~G 106 (110)
..++|+++|+++++++++|++|+|+++++++++.++. ++||+|+++...|+.+. ...+..|++++.+++++++
T Consensus 61 ~~~lr~~ia~~~~~~~~~i~it~G~~~~l~~~~~~l~----~~gd~Vlv~~p~y~~~~---~~~~~~g~~~~~v~~~~~~ 133 (351)
T PRK14807 61 AEKLREELARYCSVVPTNIFVGNGSDEIIHLIMLAFI----NKGDVVIYPHPSFAMYS---VYSKIAGAVEIPVKLKEDY 133 (351)
T ss_pred HHHHHHHHHHHhCCCcccEEEecCHHHHHHHHHHHhc----CCCCEEEEeCCChHHHH---HHHHHcCCeEEEeecCCCC
Confidence 5789999999999999999999999999999999876 89999998655544332 2335689999999998765
Q ss_pred ccc
Q psy17798 107 NFL 109 (110)
Q Consensus 107 ~~~ 109 (110)
.+|
T Consensus 134 ~~d 136 (351)
T PRK14807 134 TYD 136 (351)
T ss_pred CCC
Confidence 443
No 34
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=99.19 E-value=1.1e-10 Score=84.62 Aligned_cols=75 Identities=16% Similarity=0.111 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCCcc
Q psy17798 28 EDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQGGN 107 (110)
Q Consensus 28 ~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~G~ 107 (110)
.++|+++|+++++++++|++|+|+++++++++.++. ++||+|+++...|+. ....++..|++++.+|+++++.
T Consensus 74 ~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~~----~~gd~vli~~P~y~~---~~~~~~~~g~~~~~v~~~~~~~ 146 (371)
T PRK05166 74 RALREAIAARTGVPADRIILGNGSEDLIAVICRAVL----RPGDRVVTLYPSFPL---HEDYPTMMGARVERVTVTPDLG 146 (371)
T ss_pred HHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHhc----CCCCEEEEcCCChHH---HHHHHHHcCCeEEEeecCCCCC
Confidence 379999999999999999999999999999999886 899999976555554 3444566899999999987654
Q ss_pred cc
Q psy17798 108 FL 109 (110)
Q Consensus 108 ~~ 109 (110)
+|
T Consensus 147 ~~ 148 (371)
T PRK05166 147 FD 148 (371)
T ss_pred CC
Confidence 43
No 35
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=99.17 E-value=2e-10 Score=82.08 Aligned_cols=75 Identities=16% Similarity=0.239 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCCcc
Q psy17798 28 EDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQGGN 107 (110)
Q Consensus 28 ~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~G~ 107 (110)
+++|+.+|+++++++++|++|+|++++++.++.++. ++||+|++++..|+.+.. ..+..|++++.+|++++|.
T Consensus 57 ~~lr~~ia~~~~~~~~~i~~~~G~~~~l~~~~~~l~----~~gd~v~~~~p~y~~~~~---~~~~~g~~~~~~~~~~~~~ 129 (346)
T TIGR01141 57 AELKQALADYYGVDPEQILLGNGSDEIIELLIRAFL----EPGDAVLVPPPTYSMYEI---SAKIHGAEVVKVPLDEDGQ 129 (346)
T ss_pred HHHHHHHHHHhCcChHHEEEcCCHHHHHHHHHHHhc----CCCCEEEEcCCCHHHHHH---HHHHcCCeEEEeccCCCCC
Confidence 689999999999999999999999999999998876 789999998877765443 2355799999999988775
Q ss_pred cc
Q psy17798 108 FL 109 (110)
Q Consensus 108 ~~ 109 (110)
+|
T Consensus 130 ~d 131 (346)
T TIGR01141 130 LD 131 (346)
T ss_pred CC
Confidence 54
No 36
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=99.17 E-value=2.2e-10 Score=83.08 Aligned_cols=74 Identities=19% Similarity=0.197 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCC
Q psy17798 26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQG 105 (110)
Q Consensus 26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~ 105 (110)
...++|+++|+++++++++|++|+|++++++++++++. ++||+|++++..|+.+... .+..|++++.+|++++
T Consensus 65 g~~~Lr~aia~~~~~~~~~I~vt~Gs~e~i~~~~~~l~----~~gd~vlv~~P~y~~~~~~---~~~~g~~v~~v~~~~~ 137 (366)
T PRK01533 65 GATTLRQTIANKLHVKMEQVLCGSGLDEVIQIISRAVL----KAGDNIVTAGATFPQYRHH---AIIEGCEVKEVALNNG 137 (366)
T ss_pred CHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHhc----CCCCEEEEcCCcHHHHHHH---HHHcCCEEEEeecCCC
Confidence 45789999999999999999999999999999999987 7999999876666555543 4567999999999754
Q ss_pred c
Q psy17798 106 G 106 (110)
Q Consensus 106 G 106 (110)
+
T Consensus 138 ~ 138 (366)
T PRK01533 138 V 138 (366)
T ss_pred C
Confidence 3
No 37
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=99.14 E-value=4.2e-10 Score=81.95 Aligned_cols=75 Identities=13% Similarity=0.141 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCCc
Q psy17798 27 VEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQGG 106 (110)
Q Consensus 27 ~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~G 106 (110)
..++|+++|+++++++++|++|+|+++++++++.++. ++||+|+++...|+.+... .+..|++++.+|.++++
T Consensus 88 ~~~lr~~ia~~~~~~~~~I~~t~Ga~~~i~~~~~~~~----~~gd~Vlv~~P~y~~y~~~---~~~~g~~~~~v~~~~~~ 160 (380)
T PLN03026 88 SRRLRAALAEDSGLESENILVGCGADELIDLLMRCVL----DPGDKIIDCPPTFGMYVFD---AAVNGAEVIKVPRTPDF 160 (380)
T ss_pred HHHHHHHHHHHhCcChhhEEEcCCHHHHHHHHHHHhc----CCCCEEEEcCCChHHHHHH---HHHcCCEEEEeecCCCC
Confidence 5689999999999999999999999999999998876 7999999887777654433 24579999999987654
Q ss_pred cc
Q psy17798 107 NF 108 (110)
Q Consensus 107 ~~ 108 (110)
.+
T Consensus 161 ~~ 162 (380)
T PLN03026 161 SL 162 (380)
T ss_pred Cc
Confidence 33
No 38
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=99.13 E-value=4.1e-10 Score=90.12 Aligned_cols=80 Identities=11% Similarity=0.151 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCcEEEeCChH----HHHHHHHHHhHHhhccCCC----EEEEcCCCChhHHHHHHHHHhC
Q psy17798 22 ESEKAVEDARQEIATLINCDPKEIIFTSGAT----ESNNIAVKGVARFYKEKKK----HVITTQTEHKCVLDSCRILEGE 93 (110)
Q Consensus 22 ~~~~~~~~~R~~la~~l~~~~~~i~~t~gat----~a~~~i~~~l~~~~~~~g~----~vl~~~~e~ps~~~~~~~l~~~ 93 (110)
...+.+.++|+.+++++|+ ++|+|++|++ ++++++++++.. .+|| +||++..||+++..+|.. .
T Consensus 565 g~~~~~~~~r~~la~i~g~--~~v~f~pnaga~ge~a~~~vi~~~~~---~~Gd~~r~~vli~~~aH~sn~a~a~~---~ 636 (993)
T PLN02414 565 GYQEMFEDLGDLLCEITGF--DSFSLQPNAGAAGEYAGLMVIRAYHL---SRGDHHRNVCIIPVSAHGTNPASAAM---C 636 (993)
T ss_pred HHHHHHHHHHHHHHHHhCC--CeEEEcCCCcHHHHHHHHHHHHHHHh---ccCCCCCCEEEeCCCcCccCHHHHHH---C
Confidence 4567899999999999998 8999999999 999999999962 3377 899999999999999865 6
Q ss_pred CcEEEEecCCCCcccc
Q psy17798 94 GFNVLGSNPGQGGNFL 109 (110)
Q Consensus 94 g~~v~~v~~~~~G~~~ 109 (110)
|++++.||+|++|.+|
T Consensus 637 G~~vv~v~~d~~G~vD 652 (993)
T PLN02414 637 GMKIVVVGTDAKGNIN 652 (993)
T ss_pred CCEEEEeccCCCCCcC
Confidence 9999999999999876
No 39
>PRK08960 hypothetical protein; Provisional
Probab=99.13 E-value=1.9e-10 Score=83.66 Aligned_cols=75 Identities=19% Similarity=0.197 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHhC------CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798 25 KAVEDARQEIATLIN------CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL 98 (110)
Q Consensus 25 ~~~~~~R~~la~~l~------~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~ 98 (110)
.+.+++|+++|++++ +++++|++|+|+++++++++.++. ++||+|++++.+||++...+. ..|.+++
T Consensus 69 ~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~----~~gd~vlv~~p~y~~~~~~~~---~~g~~~~ 141 (387)
T PRK08960 69 RGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASSLLV----DPGKHWLLADPGYPCNRHFLR---LVEGAAQ 141 (387)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHHHHHHHhc----CCCCEEEEcCCCCcchHHHHH---hcCCeEE
Confidence 457889999999973 689999999999999999999886 899999999999998876554 4688999
Q ss_pred EecCCCCc
Q psy17798 99 GSNPGQGG 106 (110)
Q Consensus 99 ~v~~~~~G 106 (110)
.+|+++++
T Consensus 142 ~v~~~~~~ 149 (387)
T PRK08960 142 LVPVGPDS 149 (387)
T ss_pred EEecCccc
Confidence 99998653
No 40
>PRK07908 hypothetical protein; Provisional
Probab=99.11 E-value=3.1e-10 Score=81.47 Aligned_cols=74 Identities=16% Similarity=0.224 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798 25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ 104 (110)
Q Consensus 25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~ 104 (110)
....++|+++|+++++++++|++|+|+++++.++++ + ++++ +++ ++|++...+..++..|++++.+|+++
T Consensus 58 ~g~~~lr~aia~~~~~~~~~I~it~Ga~~al~~~~~-l-----~~~~-viv---~~P~y~~~~~~~~~~G~~i~~v~~~~ 127 (349)
T PRK07908 58 EDERRARAAVAARHGRTPDEVLLLAGAAEGFALLAR-L-----RPRR-AAV---VHPSFTEPEAALRAAGIPVHRVVLDP 127 (349)
T ss_pred cchHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHh-c-----CCCe-EEE---eCCCChHHHHHHHHcCCEEEeeccCc
Confidence 457789999999999999999999999999999887 3 4654 443 57888888877788999999999987
Q ss_pred Cccc
Q psy17798 105 GGNF 108 (110)
Q Consensus 105 ~G~~ 108 (110)
++.+
T Consensus 128 ~~~~ 131 (349)
T PRK07908 128 PFRL 131 (349)
T ss_pred ccCc
Confidence 5433
No 41
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=99.10 E-value=1.7e-09 Score=77.81 Aligned_cols=99 Identities=19% Similarity=0.229 Sum_probs=73.0
Q ss_pred hhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChh
Q psy17798 3 PYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKC 82 (110)
Q Consensus 3 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps 82 (110)
+++....+++.. +. ......+++|+.+|+++|+++++++|++|+++++..++.++.....+++++|++++.+|++
T Consensus 42 ~~~~~~~~~~~~--~~---~~~~~~~~~~~~la~~~g~~~~~~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl~~~~~h~s 116 (371)
T PRK13520 42 MFLETNLGDPGL--FP---GTAKLEEEAVEMLGELLHLPDAYGYITSGGTEANIQAVRAARNLAKAEKPNIVVPESAHFS 116 (371)
T ss_pred HHHhcCCCCccc--Cc---cHHHHHHHHHHHHHHHhCCCCCCeEEecCcHHHHHHHHHHHHhhccCCCceEEecCcchHH
Confidence 344444556542 32 2345678999999999999888899999999999988877642111357899999999998
Q ss_pred HHHHHHHHHhCCcEEEEecCCCCcccc
Q psy17798 83 VLDSCRILEGEGFNVLGSNPGQGGNFL 109 (110)
Q Consensus 83 ~~~~~~~l~~~g~~v~~v~~~~~G~~~ 109 (110)
+.... +..|++++.+|.+++|.+|
T Consensus 117 ~~~~~---~~~g~~~~~v~~~~~~~~d 140 (371)
T PRK13520 117 FDKAA---DMLGVELRRAPLDDDYRVD 140 (371)
T ss_pred HHHHH---HHcCceEEEecCCCCCcCC
Confidence 65433 4569999999998777654
No 42
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=99.09 E-value=7.1e-10 Score=79.88 Aligned_cols=75 Identities=12% Similarity=0.161 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCC-CEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCC
Q psy17798 27 VEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKK-KHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQG 105 (110)
Q Consensus 27 ~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g-~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~ 105 (110)
..++|+.+|+++|+++++|++|+|+++++.++++++. ++| ++|+++...|+.+... .+..|++++.+|++++
T Consensus 59 ~~~l~~~~a~~~g~~~~~I~~~~Gs~e~i~~~~~~~~----~~g~~~vli~~P~y~~y~~~---~~~~G~~~~~v~~~~~ 131 (351)
T PRK01688 59 PKAVIENYAAYAGVKPEQVLVSRGADEGIELLIRAFC----EPGKDAILYCPPTYGMYSVS---AETIGVEIRTVPTLDN 131 (351)
T ss_pred hHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhc----CCCCCEEEEcCCCHHHHHHH---HHHcCCEEEEeecCCC
Confidence 3689999999999999999999999999999999876 676 8999877777665433 3557999999999766
Q ss_pred ccc
Q psy17798 106 GNF 108 (110)
Q Consensus 106 G~~ 108 (110)
+.+
T Consensus 132 ~~~ 134 (351)
T PRK01688 132 WQL 134 (351)
T ss_pred CCC
Confidence 443
No 43
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=99.08 E-value=8e-10 Score=79.51 Aligned_cols=72 Identities=13% Similarity=0.183 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798 26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ 104 (110)
Q Consensus 26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~ 104 (110)
...++|+++|+++++++++|++|+|+++++.++++++. ++||+|+++...|+.+... .+..|++++.+|++.
T Consensus 65 g~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~~----~~gd~v~~~~p~y~~~~~~---~~~~g~~~~~~~~~~ 136 (359)
T PRK03158 65 YAPELRTKVAKHLGVDEEQLLFGAGLDEVIQMISRALL----NPGTNTVMAEPTFSQYRHN---AIIEGAEVREVPLKD 136 (359)
T ss_pred cHHHHHHHHHHHhCCCHHHEEECCCHHHHHHHHHHHHh----CCCCEEEEcCCCHHHHHHH---HHHcCCeEEEEecCC
Confidence 46789999999999999999999999999999999886 7999999877666665443 345799999999873
No 44
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=99.08 E-value=2.3e-09 Score=79.35 Aligned_cols=81 Identities=21% Similarity=0.260 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCcEEEEe
Q psy17798 22 ESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFNVLGS 100 (110)
Q Consensus 22 ~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~v~~v 100 (110)
...+.+.+.++.+++++|++++++++|+|+|+++..++.++.. .+|++|++++.+||++..++..+ +..|++++.+
T Consensus 109 g~~~~~~e~~~~la~l~g~~~~~v~~~~g~t~~~~~~~~a~~~---~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v 185 (447)
T PRK00451 109 GTLQAIFEYQTMICELTGMDVANASMYDGATALAEAALMAVRI---TKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEV 185 (447)
T ss_pred HHHHHHHHHHHHHHHHhCCCcceEEecCcHHHHHHHHHHHHHh---cCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEe
Confidence 3566788888999999999999999999999999988888752 68999999999999999998876 5579999999
Q ss_pred cCCCC
Q psy17798 101 NPGQG 105 (110)
Q Consensus 101 ~~~~~ 105 (110)
|++++
T Consensus 186 ~~~~~ 190 (447)
T PRK00451 186 PYEDG 190 (447)
T ss_pred cCCCC
Confidence 99865
No 45
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=99.07 E-value=8.5e-10 Score=79.97 Aligned_cols=73 Identities=16% Similarity=0.133 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCCc
Q psy17798 27 VEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQGG 106 (110)
Q Consensus 27 ~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~G 106 (110)
..++|+++|+++++++++|++|+|+++++.+++.++. ++||.|++.+..||.+.... +..|.+++.+|.+.++
T Consensus 69 ~~~Lr~~ia~~~~~~~~~I~it~G~~~~l~~~~~~~~----~~gd~vlv~~p~y~~~~~~~---~~~g~~~~~vp~~~~~ 141 (369)
T PRK08153 69 NHDLRHALAAHHGVAPENIMVGEGIDGLLGLIVRLYV----EPGDPVVTSLGAYPTFNYHV---AGFGGRLVTVPYRDDR 141 (369)
T ss_pred cHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhc----CCCCEEEECCCcchHHHHHH---HHcCCeEEEeeCCCCC
Confidence 5689999999999999999999999999999999876 79999999888888776544 3468999999987664
No 46
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=99.07 E-value=7e-10 Score=83.71 Aligned_cols=75 Identities=16% Similarity=0.179 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHh------CCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEE
Q psy17798 24 EKAVEDARQEIATLI------NCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97 (110)
Q Consensus 24 ~~~~~~~R~~la~~l------~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v 97 (110)
..++.++|++||+++ ++++++|++|+|+++++++++.++. ++||+|+++...|+.+.... +..|+++
T Consensus 184 ~~G~~~lReaia~~~~~~~~~~~~~~~I~it~G~~eal~~~~~~l~----~~Gd~Vli~~P~y~~y~~~~---~~~g~~~ 256 (517)
T PRK13355 184 SKGLFSARKAIMQYAQLKGLPNVDVDDIYTGNGVSELINLSMSALL----DDGDEVLIPSPDYPLWTACV---NLAGGTA 256 (517)
T ss_pred CcChHHHHHHHHHHHHhcCCCCCChhHEEEeCcHHHHHHHHHHHhC----CCCCEEEEcCCCCcCHHHHH---HHCCCEE
Confidence 346889999999999 6789999999999999999999886 89999999998888877654 4469999
Q ss_pred EEecCCCC
Q psy17798 98 LGSNPGQG 105 (110)
Q Consensus 98 ~~v~~~~~ 105 (110)
+.++++++
T Consensus 257 v~~~~~~~ 264 (517)
T PRK13355 257 VHYRCDEQ 264 (517)
T ss_pred EEeecCcc
Confidence 99998765
No 47
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=99.07 E-value=2.3e-09 Score=76.40 Aligned_cols=97 Identities=18% Similarity=0.130 Sum_probs=73.0
Q ss_pred CCCCCcCChHHHHHHHHHHHHHHHHHHHhCCC--CCcEEEeCChHHHHHHHHHHhHHhhcc--------C--CCEEEEcC
Q psy17798 10 GNPHSRTHAYGWESEKAVEDARQEIATLINCD--PKEIIFTSGATESNNIAVKGVARFYKE--------K--KKHVITTQ 77 (110)
Q Consensus 10 ~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~--~~~i~~t~gat~a~~~i~~~l~~~~~~--------~--g~~vl~~~ 77 (110)
.|+....|..+....+..+++++.+++++|++ +++++||+|+|+|+++++.++...... + ++.|++++
T Consensus 23 ~n~~~~~y~~~~~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 102 (345)
T cd06450 23 KNAIDFTWDESPAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSD 102 (345)
T ss_pred cCCCCcccccCchhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcC
Confidence 34443345666666777888999999999985 568999999999999999887532111 2 34889999
Q ss_pred CCChhHHHHHHHHHhCCcEEEEecCCCCcccc
Q psy17798 78 TEHKCVLDSCRILEGEGFNVLGSNPGQGGNFL 109 (110)
Q Consensus 78 ~e~ps~~~~~~~l~~~g~~v~~v~~~~~G~~~ 109 (110)
.+|+++..++.. .|++++.+|++++|.+|
T Consensus 103 ~~h~~~~~~~~~---~g~~~~~v~~~~~~~~d 131 (345)
T cd06450 103 QAHVSVEKAAAY---LDVKVRLVPVDEDGRMD 131 (345)
T ss_pred cchhHHHHHHHH---HhcCeEEeeeCCCCCcC
Confidence 999998777654 38899999998877554
No 48
>PRK03321 putative aminotransferase; Provisional
Probab=99.06 E-value=1e-09 Score=78.72 Aligned_cols=76 Identities=12% Similarity=0.118 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCC
Q psy17798 26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQG 105 (110)
Q Consensus 26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~ 105 (110)
..+++|+.+|+++++++++|++|+|+++++..++.++. ++||+|+++...++.+.. ..+..|++++.+|++++
T Consensus 58 g~~~lr~~ia~~~~~~~~~I~~~~G~~~~l~~~~~~~~----~~gd~Vli~~p~y~~~~~---~~~~~g~~~~~v~~~~~ 130 (352)
T PRK03321 58 GAVELRAALAEHLGVPPEHVAVGCGSVALCQQLVQATA----GPGDEVIFAWRSFEAYPI---LVQVAGATPVQVPLTPD 130 (352)
T ss_pred cHHHHHHHHHHHhCcCHHHEEECCCHHHHHHHHHHHhc----CCCCEEEeCCCCHHHHHH---HHHHcCCEEEEccCCCC
Confidence 56789999999999999999999999999999988876 899999976544444333 33567999999999855
Q ss_pred ccc
Q psy17798 106 GNF 108 (110)
Q Consensus 106 G~~ 108 (110)
+.+
T Consensus 131 ~~~ 133 (352)
T PRK03321 131 HTH 133 (352)
T ss_pred CCC
Confidence 443
No 49
>PRK07681 aspartate aminotransferase; Provisional
Probab=99.05 E-value=8.5e-10 Score=80.59 Aligned_cols=75 Identities=8% Similarity=0.072 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHhC------CCC-CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEE
Q psy17798 25 KAVEDARQEIATLIN------CDP-KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97 (110)
Q Consensus 25 ~~~~~~R~~la~~l~------~~~-~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v 97 (110)
.+..++|++||++++ +++ ++|++|+|+++++.+++.++. ++||.|+++...||.+.... +..|+++
T Consensus 69 ~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~----~~Gd~Vlv~~P~y~~~~~~~---~~~G~~~ 141 (399)
T PRK07681 69 SGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLVHLPMVYA----NPGDIILVPDPGYTAYETGI---QMAGATS 141 (399)
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHHHHHHHHhC----CCCCEEEECCCCccchHHHH---HhcCCEE
Confidence 367789999999985 577 799999999999999999886 89999998777777665544 5579999
Q ss_pred EEecCCCCc
Q psy17798 98 LGSNPGQGG 106 (110)
Q Consensus 98 ~~v~~~~~G 106 (110)
+.+|+++++
T Consensus 142 ~~v~~~~~~ 150 (399)
T PRK07681 142 YYMPLKKEN 150 (399)
T ss_pred EEEecCCCC
Confidence 999998653
No 50
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=99.05 E-value=2.2e-09 Score=68.65 Aligned_cols=75 Identities=17% Similarity=0.205 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCCc
Q psy17798 27 VEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQGG 106 (110)
Q Consensus 27 ~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~G 106 (110)
++++|+.+++++++++++++|++|+|+|+.++++++. +++++|+++..+|++... ...+..|++++.++.+.++
T Consensus 2 ~~~~~~~l~~~~~~~~~~~~~~~~~t~a~~~~~~~~~----~~~~~v~~~~~~~~~~~~--~~~~~~g~~~~~v~~~~~~ 75 (170)
T cd01494 2 LEELEEKLARLLQPGNDKAVFVPSGTGANEAALLALL----GPGDEVIVDANGHGSRYW--VAAELAGAKPVPVPVDDAG 75 (170)
T ss_pred HHHHHHHHHHHcCCCCCcEEEeCCcHHHHHHHHHHhC----CCCCEEEEeecccceehh--hHHHhcCCEEEEeccCCCC
Confidence 5689999999999888999999999999999999986 678999999999999874 3345679999999987654
Q ss_pred c
Q psy17798 107 N 107 (110)
Q Consensus 107 ~ 107 (110)
.
T Consensus 76 ~ 76 (170)
T cd01494 76 Y 76 (170)
T ss_pred c
Confidence 3
No 51
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=99.05 E-value=2.9e-09 Score=76.72 Aligned_cols=98 Identities=17% Similarity=0.256 Sum_probs=72.3
Q ss_pred hhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHh-h-ccCCCEEEEcCCCCh
Q psy17798 4 YLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARF-Y-KEKKKHVITTQTEHK 81 (110)
Q Consensus 4 ~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~-~-~~~g~~vl~~~~e~p 81 (110)
+++...++++ .+. + ..+..+++|+.+|+++|++++++++++|+++++..++.++... . .++|++|++++.+|+
T Consensus 43 ~~~~~~~~~~--~~~-~--~~~~~~~~~~~la~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~~~~~h~ 117 (373)
T TIGR03812 43 FIETNLGDPG--LFP-G--TKKIEEEVVGSLGNLLHLPDAYGYIVSGGTEANIQAVRAAKNLAREEKRTPNIIVPESAHF 117 (373)
T ss_pred HhhcCCCCcc--cCc-c--HHHHHHHHHHHHHHHhCCCCCCeEEeccHHHHHHHHHHHHHHHHhccCCCcEEEECCcchH
Confidence 4444456665 233 2 3456789999999999999889999999999998887765420 0 136689999999999
Q ss_pred hHHHHHHHHHhCCcEEEEecCCCCcccc
Q psy17798 82 CVLDSCRILEGEGFNVLGSNPGQGGNFL 109 (110)
Q Consensus 82 s~~~~~~~l~~~g~~v~~v~~~~~G~~~ 109 (110)
++.... +..|++++.+|.++++.+|
T Consensus 118 ~~~~~~---~~~G~~~~~v~~~~~~~~d 142 (373)
T TIGR03812 118 SFEKAA---EMLGLELRYAPLDEDYTVD 142 (373)
T ss_pred HHHHHH---HHcCCeEEEEeeCCCCCcC
Confidence 865543 4579999999988776544
No 52
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=99.04 E-value=3.2e-09 Score=76.12 Aligned_cols=83 Identities=11% Similarity=0.043 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCC-CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEe
Q psy17798 22 ESEKAVEDARQEIATLINCDP-KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGS 100 (110)
Q Consensus 22 ~~~~~~~~~R~~la~~l~~~~-~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v 100 (110)
...+..+++|+.+++++|+++ +.+++|+|+|+++++++.++. .+|++|+++...|++... ...++..|++++.+
T Consensus 29 ~~~~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~~----~~g~~vl~~~~~~~~~~~-~~~~~~~g~~~~~v 103 (356)
T cd06451 29 EFLALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNLL----EPGDKVLVGVNGVFGDRW-ADMAERYGADVDVV 103 (356)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHhC----CCCCEEEEecCCchhHHH-HHHHHHhCCCeEEe
Confidence 345678999999999999954 458899999999999999886 789999998877877421 23346679999999
Q ss_pred cCCCCcccc
Q psy17798 101 NPGQGGNFL 109 (110)
Q Consensus 101 ~~~~~G~~~ 109 (110)
|+++++.+|
T Consensus 104 ~~~~~~~~~ 112 (356)
T cd06451 104 EKPWGEAVS 112 (356)
T ss_pred ecCCCCCCC
Confidence 998765544
No 53
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=99.04 E-value=2e-09 Score=77.43 Aligned_cols=77 Identities=8% Similarity=0.101 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHhCCCC-CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798 26 AVEDARQEIATLINCDP-KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ 104 (110)
Q Consensus 26 ~~~~~R~~la~~l~~~~-~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~ 104 (110)
...++|+.+|++++.++ ++|++|+|+++++.++++++. ++||+|+++...|+.+ ....+..|++++.+|+++
T Consensus 64 ~~~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~~~~~~~~----~~gd~vlv~~P~y~~~---~~~~~~~g~~~~~i~~~~ 136 (356)
T PRK04870 64 RAAALKAALRAAMGVPAGADVLLGNGSDELIQLLALACA----KPGATVLAPEPGFVMY---RMSAKLAGLEFVGVPLTA 136 (356)
T ss_pred CHHHHHHHHHHHhCcCCCCcEEEcCCHHHHHHHHHHHhc----CCCCEEEECCCCHHHH---HHHHHHcCCEEEEecCCC
Confidence 35789999999999865 589999999999999998876 7999999865555443 334466899999999987
Q ss_pred Ccccc
Q psy17798 105 GGNFL 109 (110)
Q Consensus 105 ~G~~~ 109 (110)
++.+|
T Consensus 137 ~~~~d 141 (356)
T PRK04870 137 DFTLD 141 (356)
T ss_pred CCCCC
Confidence 65544
No 54
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=99.03 E-value=1.5e-09 Score=78.25 Aligned_cols=71 Identities=14% Similarity=0.167 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCC
Q psy17798 28 EDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQG 105 (110)
Q Consensus 28 ~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~ 105 (110)
.++|+.+|+++++++++|++|+|+++++++++.++. ++||+|+++...|+.+... .+..|++++.+|++..
T Consensus 70 ~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~l~----~~gd~vl~~~p~y~~~~~~---~~~~g~~~~~~~~~~~ 140 (367)
T PRK02731 70 FELKAALAEKFGVDPERIILGNGSDEILELLARAYL----GPGDEVIYSEHGFAVYPIA---AQAVGAKPVEVPAKDY 140 (367)
T ss_pred HHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHhc----CCCCEEEEecCCHHHHHHH---HHHcCCeEEEecccCC
Confidence 589999999999999999999999999999999886 7899999887776654433 3557999999998543
No 55
>PRK14809 histidinol-phosphate aminotransferase; Provisional
Probab=99.03 E-value=2e-09 Score=77.53 Aligned_cols=72 Identities=8% Similarity=0.072 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798 26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ 104 (110)
Q Consensus 26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~ 104 (110)
...++|+++|+++++++++|++|+|++++++++++++. ++||.|++.+..|+.+. ...+..|.+++.+|++.
T Consensus 66 ~~~~lr~~ia~~~~~~~~~I~it~G~~~al~~~~~~~~----~~gd~V~v~~P~y~~~~---~~~~~~g~~~~~~~l~~ 137 (357)
T PRK14809 66 SHADLTAALADRWDVSPEQVWLANGGDGALDYLARAML----DPGDTVLVPDPGFAYYG---MSARYHHGEVREYPVSK 137 (357)
T ss_pred CHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHhc----CCCCEEEEeCCChHHHH---HHHHHcCCeEEEEeccc
Confidence 35689999999999999999999999999999999886 89999998665555433 23355788999998864
No 56
>PRK06225 aspartate aminotransferase; Provisional
Probab=99.02 E-value=2.4e-09 Score=77.72 Aligned_cols=72 Identities=18% Similarity=0.181 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798 25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG 103 (110)
Q Consensus 25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~ 103 (110)
+...++|+++|+++++++++|++|+|++++++++++++. .+||+|++++..|+.+. ..++..|++++++|++
T Consensus 66 ~g~~~lr~~ia~~l~~~~~~v~~~~g~t~al~~~~~~~~----~~gd~vl~~~p~y~~~~---~~~~~~g~~~~~v~~~ 137 (380)
T PRK06225 66 EGFPELRELILKDLGLDDDEALITAGATESLYLVMRAFL----SPGDNAVTPDPGYLIID---NFASRFGAEVIEVPIY 137 (380)
T ss_pred cchHHHHHHHHHhcCCCCCcEEEeCCHHHHHHHHHHHhc----CCCCEEEEcCCCCcchH---HHHHHhCceEEeeccc
Confidence 457899999999999999999999999999999999886 78999998876666543 3335679999999975
No 57
>PRK07324 transaminase; Validated
Probab=99.01 E-value=1.1e-09 Score=79.54 Aligned_cols=74 Identities=23% Similarity=0.269 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHhC-CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798 25 KAVEDARQEIATLIN-CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG 103 (110)
Q Consensus 25 ~~~~~~R~~la~~l~-~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~ 103 (110)
.+..++|++||++++ +++++|++|+|+++|+.+++.++. .+||+|+++...|++ .+...+..|++++.+|++
T Consensus 62 ~G~~~lr~~ia~~~~~~~~~~vi~t~G~~~al~~~~~~l~----~~gd~Vl~~~P~y~~---~~~~~~~~g~~v~~v~~~ 134 (373)
T PRK07324 62 EGSPEFKEAVASLYQNVKPENILQTNGATGANFLVLYALV----EPGDHVISVYPTYQQ---LYDIPESLGAEVDYWQLK 134 (373)
T ss_pred CCCHHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhC----CCCCEEEEcCCCchh---HHHHHHHcCCEEEEEecc
Confidence 467899999999985 689999999999999999999886 899999986544444 444456689999999998
Q ss_pred CC
Q psy17798 104 QG 105 (110)
Q Consensus 104 ~~ 105 (110)
++
T Consensus 135 ~~ 136 (373)
T PRK07324 135 EE 136 (373)
T ss_pred cc
Confidence 63
No 58
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=99.01 E-value=9.6e-10 Score=79.96 Aligned_cols=75 Identities=13% Similarity=0.055 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHh----C--CCCC-cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEE
Q psy17798 25 KAVEDARQEIATLI----N--CDPK-EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97 (110)
Q Consensus 25 ~~~~~~R~~la~~l----~--~~~~-~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v 97 (110)
.+..++|+++|+++ | ++++ +|++|+|+++++.++++++. .+||+|++....|+.+. ..++..|+++
T Consensus 68 ~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~al~~~~~~l~----~~gd~Vlv~~P~y~~~~---~~~~~~g~~~ 140 (388)
T PRK07366 68 HGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEGTAHLPLAVL----NPGDFALLLDPGYPSHA---GGVYLAGGQI 140 (388)
T ss_pred CCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHHHHHHHHHhC----CCCCEEEEcCCCCcchH---HHHHhcCCEE
Confidence 45678999999988 3 6788 69999999999999999887 79999998665555554 4445679999
Q ss_pred EEecCCCCc
Q psy17798 98 LGSNPGQGG 106 (110)
Q Consensus 98 ~~v~~~~~G 106 (110)
+.+|+++++
T Consensus 141 ~~v~~~~~~ 149 (388)
T PRK07366 141 YPMPLRAEN 149 (388)
T ss_pred EEEECCCcc
Confidence 999998654
No 59
>PRK06836 aspartate aminotransferase; Provisional
Probab=99.01 E-value=2.4e-09 Score=78.17 Aligned_cols=74 Identities=19% Similarity=0.215 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHhC------CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798 25 KAVEDARQEIATLIN------CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL 98 (110)
Q Consensus 25 ~~~~~~R~~la~~l~------~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~ 98 (110)
..+.++|+.+|++++ ++|++|++|+|++++++.+++++. .+||.|+++...|+.+... ++..|++++
T Consensus 73 ~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~----~~gd~Vli~~p~~~~~~~~---~~~~g~~v~ 145 (394)
T PRK06836 73 AGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGALNVALKAIL----NPGDEVIVFAPYFVEYRFY---VDNHGGKLV 145 (394)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHHHHHHHHHHhc----CCCCEEEEcCCCCccHHHH---HHHcCCEEE
Confidence 467789999999884 579999999999999999999886 7999999988777765443 356799999
Q ss_pred EecCCCC
Q psy17798 99 GSNPGQG 105 (110)
Q Consensus 99 ~v~~~~~ 105 (110)
.+|++++
T Consensus 146 ~v~~~~~ 152 (394)
T PRK06836 146 VVPTDTD 152 (394)
T ss_pred EEecCCc
Confidence 9999876
No 60
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=99.00 E-value=3e-09 Score=76.49 Aligned_cols=75 Identities=11% Similarity=0.124 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHhCCCCCcEEE-eCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCC
Q psy17798 27 VEDARQEIATLINCDPKEIIF-TSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQG 105 (110)
Q Consensus 27 ~~~~R~~la~~l~~~~~~i~~-t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~ 105 (110)
.+++|+.+|+++++++++|++ |+|++++++.+++++. ++||+|+++...|+.+.. .++..|++++.+|.+++
T Consensus 71 ~~~lr~~ia~~~~~~~~~i~~~~~Ga~~~i~~~~~~~~----~~gd~vlv~~p~y~~~~~---~~~~~g~~~~~~~~~~~ 143 (361)
T PRK00950 71 APELREALSKYTGVPVENIIVGGDGMDEVIDTLMRTFI----DPGDEVIIPTPTFSYYEI---SAKAHGAKPVYAKREED 143 (361)
T ss_pred HHHHHHHHHHHhCCCHHHEEEeCCCHHHHHHHHHHHhc----CCCCEEEEcCCChHHHHH---HHHHcCCEEEEeecCCC
Confidence 378999999999999999999 7899999999998876 799999987766655433 34567999999997766
Q ss_pred ccc
Q psy17798 106 GNF 108 (110)
Q Consensus 106 G~~ 108 (110)
+.+
T Consensus 144 ~~~ 146 (361)
T PRK00950 144 FSL 146 (361)
T ss_pred CCc
Confidence 443
No 61
>PRK03967 histidinol-phosphate aminotransferase; Provisional
Probab=99.00 E-value=3.2e-09 Score=76.11 Aligned_cols=74 Identities=19% Similarity=0.178 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCC
Q psy17798 26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQG 105 (110)
Q Consensus 26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~ 105 (110)
...++|+++|+++++++++|++|+|++++++.++..+ +||+|+++...|+.+... .+..|++++.++++++
T Consensus 56 g~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~------~gd~V~v~~P~y~~~~~~---~~~~g~~~~~v~~~~~ 126 (337)
T PRK03967 56 TSDPLREAIAEFYGLDAENIAVGNGSDELISYLVKLF------EGKHIVITPPTFGMYSFY---AKLNGIPVIDVPLKED 126 (337)
T ss_pred CHHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHHh------CCCeEEEeCCChHHHHHH---HHHcCCeEEEeecCCC
Confidence 5678999999999999999999999999999887653 589999877766644332 2557999999999876
Q ss_pred ccc
Q psy17798 106 GNF 108 (110)
Q Consensus 106 G~~ 108 (110)
+.+
T Consensus 127 ~~~ 129 (337)
T PRK03967 127 FTI 129 (337)
T ss_pred CCc
Confidence 444
No 62
>PRK09265 aminotransferase AlaT; Validated
Probab=99.00 E-value=3e-09 Score=77.85 Aligned_cols=74 Identities=15% Similarity=0.148 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHh------CCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798 25 KAVEDARQEIATLI------NCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL 98 (110)
Q Consensus 25 ~~~~~~R~~la~~l------~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~ 98 (110)
.+..++|+++|+++ ++++++|++|+|+++++.++++++. ++||+|++++.+|+.+...+ +..|.+++
T Consensus 72 ~G~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~~~----~~gd~Vlv~~p~y~~~~~~~---~~~g~~~v 144 (404)
T PRK09265 72 KGLFSARKAIMQYYQQKGIPDVDVDDIYIGNGVSELIVMAMQALL----NNGDEVLVPAPDYPLWTAAV---SLSGGKPV 144 (404)
T ss_pred CCcHHHHHHHHHHHhccCCCCCCcccEEEeCChHHHHHHHHHHhC----CCCCEEEEeCCCCcChHHHH---HHcCCEEE
Confidence 34678999999998 6889999999999999999999876 89999999999998766654 34688888
Q ss_pred EecCCCC
Q psy17798 99 GSNPGQG 105 (110)
Q Consensus 99 ~v~~~~~ 105 (110)
.++++.+
T Consensus 145 ~~~~~~~ 151 (404)
T PRK09265 145 HYLCDEE 151 (404)
T ss_pred EEecccc
Confidence 8887743
No 63
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=99.00 E-value=1.8e-09 Score=77.87 Aligned_cols=73 Identities=19% Similarity=0.081 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCCc
Q psy17798 27 VEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQGG 106 (110)
Q Consensus 27 ~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~G 106 (110)
..++|+++|+++++++++|++|+|+++++.++++++. +|+.|++....|+.+. ..++..|++++.+|+++++
T Consensus 59 ~~~Lr~aia~~~~v~~~~I~it~G~~~~i~~~~~~l~-----~g~~vlv~~P~y~~~~---~~~~~~g~~~~~v~~~~~~ 130 (360)
T PRK07392 59 YRELRLALAQHHQLPPEWILPGNGAAELLTWAGRELA-----QLRAVYLITPAFGDYR---RALRAFGATVKELPLPLDQ 130 (360)
T ss_pred HHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHHhC-----CCCeEEEECCCcHHHH---HHHHHcCCeEEEEeccccc
Confidence 3589999999999999999999999999999988753 5788987655555544 4445689999999998654
Q ss_pred c
Q psy17798 107 N 107 (110)
Q Consensus 107 ~ 107 (110)
.
T Consensus 131 ~ 131 (360)
T PRK07392 131 P 131 (360)
T ss_pred C
Confidence 3
No 64
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=98.99 E-value=4.9e-09 Score=75.51 Aligned_cols=82 Identities=13% Similarity=0.133 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCCC--cEEEeCChHHHHHHHHHHhHHhhccCCCE-EEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798 22 ESEKAVEDARQEIATLINCDPK--EIIFTSGATESNNIAVKGVARFYKEKKKH-VITTQTEHKCVLDSCRILEGEGFNVL 98 (110)
Q Consensus 22 ~~~~~~~~~R~~la~~l~~~~~--~i~~t~gat~a~~~i~~~l~~~~~~~g~~-vl~~~~e~ps~~~~~~~l~~~g~~v~ 98 (110)
...+.++++|+.+++++|++++ +|+||+|+|++++.++.++. .++++ |++++.+|++... ...+..|++++
T Consensus 32 ~~~~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l~----~~~~~vlv~~~~~~~~~~~--~~a~~~g~~~~ 105 (363)
T TIGR02326 32 DYNIVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSAV----PKDGKLLVVINGAYGARIV--QIAEYLGIPHH 105 (363)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhcC----CCCCeEEEEeCChhhHHHH--HHHHHcCCceE
Confidence 5567899999999999999764 79999999999999999987 45655 5556666665321 22366899999
Q ss_pred EecCCCCcccc
Q psy17798 99 GSNPGQGGNFL 109 (110)
Q Consensus 99 ~v~~~~~G~~~ 109 (110)
.+|+++++.+|
T Consensus 106 ~v~~~~~~~~d 116 (363)
T TIGR02326 106 VVDTGEVEPPD 116 (363)
T ss_pred EEeCCCCCCCC
Confidence 99998766544
No 65
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=98.99 E-value=2.2e-09 Score=80.86 Aligned_cols=75 Identities=17% Similarity=0.248 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHhC--------CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCc
Q psy17798 24 EKAVEDARQEIATLIN--------CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGF 95 (110)
Q Consensus 24 ~~~~~~~R~~la~~l~--------~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~ 95 (110)
..+..++|++||++++ ++|++|++|+|+++++.+++.++. ++||.|+++...||.+...+. ...|+
T Consensus 93 ~~G~~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~Ga~~al~~l~~~l~----~pGD~Vlv~~P~Y~~~~~~~~--~~~G~ 166 (496)
T PLN02376 93 YHGLKKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLA----DPGDVFLIPSPYYAAFDRDLR--WRTGV 166 (496)
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCcCChhhEEEccchHHHHHHHHHHhC----CCCCEEEECCCCccchHHHHH--hhCCC
Confidence 3466889999999985 689999999999999999999987 899999988877777665332 14699
Q ss_pred EEEEecCCC
Q psy17798 96 NVLGSNPGQ 104 (110)
Q Consensus 96 ~v~~v~~~~ 104 (110)
+++.||++.
T Consensus 167 ~vv~v~~~~ 175 (496)
T PLN02376 167 EIIPVPCSS 175 (496)
T ss_pred EEEEEeCCC
Confidence 999999963
No 66
>PRK05957 aspartate aminotransferase; Provisional
Probab=98.98 E-value=4.1e-09 Score=76.86 Aligned_cols=79 Identities=10% Similarity=0.037 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHhCC--C-CCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEe
Q psy17798 24 EKAVEDARQEIATLINC--D-PKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGS 100 (110)
Q Consensus 24 ~~~~~~~R~~la~~l~~--~-~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v 100 (110)
....+.+++.+++++|+ + +++|++|+|+++++..++.++. ++||+|++++..|+.+...+ +..|++++.+
T Consensus 68 ~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~----~~gd~Vlv~~P~y~~~~~~~---~~~g~~~~~v 140 (389)
T PRK05957 68 PPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMNAILAIT----DPGDEIILNTPYYFNHEMAI---TMAGCQPILV 140 (389)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHHHHHHhc----CCCCEEEEeCCCCcCHHHHH---HhcCCEEEEe
Confidence 34455666666666676 4 6789999999999999998876 79999999887777665433 4579999999
Q ss_pred cCCCCcccc
Q psy17798 101 NPGQGGNFL 109 (110)
Q Consensus 101 ~~~~~G~~~ 109 (110)
|+++++.+|
T Consensus 141 ~~~~~~~~d 149 (389)
T PRK05957 141 PTDDNYQLQ 149 (389)
T ss_pred ecCCCCCcC
Confidence 998665443
No 67
>PRK04781 histidinol-phosphate aminotransferase; Provisional
Probab=98.98 E-value=4.2e-09 Score=76.27 Aligned_cols=70 Identities=14% Similarity=0.210 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCC-CEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798 27 VEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKK-KHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG 103 (110)
Q Consensus 27 ~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g-~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~ 103 (110)
..++|+++|+++++++++|++|+|++++++++++++. .+| +.|++++..|+.+.. ..+..|++++.+|++
T Consensus 61 ~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~~----~~g~~~vlv~~p~y~~~~~---~~~~~g~~~~~v~~~ 131 (364)
T PRK04781 61 PPGLRSALAALYGCAPEQLLIGRGSDEAIDLLVRALC----VPGRDAVLVTPPVFGMYAV---CARLQNAPLVEVPLV 131 (364)
T ss_pred HHHHHHHHHHHhCcChHHEEEeCCHHHHHHHHHHHhc----CCCCCeEEEcCCChHHHHH---HHHHcCCEEEEEecC
Confidence 5799999999999999999999999999999999886 677 788876655543332 225579999999985
No 68
>PRK07337 aminotransferase; Validated
Probab=98.98 E-value=3.5e-09 Score=77.02 Aligned_cols=73 Identities=18% Similarity=0.238 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHh----C--CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798 25 KAVEDARQEIATLI----N--CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL 98 (110)
Q Consensus 25 ~~~~~~R~~la~~l----~--~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~ 98 (110)
...+++|+++|+++ + +++++|++|+|+++|+++++.++. ++||+|+++...|+++...+ +..|++++
T Consensus 67 ~g~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~----~~gd~Vlv~~p~y~~~~~~~---~~~g~~~~ 139 (388)
T PRK07337 67 LGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLLACLALV----ERGDEVLMPDPSYPCNRHFV---AAAEGRPV 139 (388)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCChHhEEEecCcHHHHHHHHHHhc----CCCCEEEEeCCCchhhHHHH---HHcCCEEE
Confidence 35778999999987 3 588999999999999999999886 89999999988888876544 45689999
Q ss_pred EecCCC
Q psy17798 99 GSNPGQ 104 (110)
Q Consensus 99 ~v~~~~ 104 (110)
.+|+++
T Consensus 140 ~~~~~~ 145 (388)
T PRK07337 140 LVPSGP 145 (388)
T ss_pred EeecCC
Confidence 999975
No 69
>PRK08361 aspartate aminotransferase; Provisional
Probab=98.98 E-value=3.2e-09 Score=77.37 Aligned_cols=75 Identities=19% Similarity=0.297 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHh------CCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798 25 KAVEDARQEIATLI------NCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL 98 (110)
Q Consensus 25 ~~~~~~R~~la~~l------~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~ 98 (110)
.+..++|+++|+++ ++++++|++|+|+++++.+++.++. ++|++|++++..|+++... ++..|++++
T Consensus 70 ~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~----~~g~~Vlv~~p~y~~~~~~---~~~~g~~~~ 142 (391)
T PRK08361 70 AGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFESLL----EEGDEVIIPDPAFVCYVED---AKIAEAKPI 142 (391)
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHHHHHHHhc----CCCCEEEEcCCCCcccHHH---HHHcCCEEE
Confidence 35678999999987 3678999999999999999999886 7999999988888776543 345799999
Q ss_pred EecCCCCc
Q psy17798 99 GSNPGQGG 106 (110)
Q Consensus 99 ~v~~~~~G 106 (110)
.+|++++|
T Consensus 143 ~v~~~~~~ 150 (391)
T PRK08361 143 RIPLREEN 150 (391)
T ss_pred EEecCCcc
Confidence 99998653
No 70
>PLN02187 rooty/superroot1
Probab=98.97 E-value=4.9e-09 Score=78.31 Aligned_cols=72 Identities=17% Similarity=0.265 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHhC------CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798 25 KAVEDARQEIATLIN------CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL 98 (110)
Q Consensus 25 ~~~~~~R~~la~~l~------~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~ 98 (110)
.+..++|+++|++++ ++|++|++|+|+++++.++++++. ++||+|+++...||.+.... +..|++++
T Consensus 108 ~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~----~pGd~Vlv~~P~y~~y~~~~---~~~g~~~~ 180 (462)
T PLN02187 108 AGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGIEIVFESLA----RPNANILLPRPGFPHYDARA---AYSGLEVR 180 (462)
T ss_pred CChHHHHHHHHHHHHHhcCCCCCcccEEEeCCHHHHHHHHHHHhc----CCCCEEEEeCCCCccHHHHH---HHcCCEEE
Confidence 457789999999983 689999999999999999999987 89999999888888765433 45799999
Q ss_pred EecCC
Q psy17798 99 GSNPG 103 (110)
Q Consensus 99 ~v~~~ 103 (110)
.+++.
T Consensus 181 ~~~l~ 185 (462)
T PLN02187 181 KFDLL 185 (462)
T ss_pred EEeCc
Confidence 99874
No 71
>PTZ00377 alanine aminotransferase; Provisional
Probab=98.97 E-value=1.4e-09 Score=81.44 Aligned_cols=79 Identities=14% Similarity=0.161 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHhC------CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCC
Q psy17798 21 WESEKAVEDARQEIATLIN------CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEG 94 (110)
Q Consensus 21 ~~~~~~~~~~R~~la~~l~------~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g 94 (110)
+....++.++|++||++++ +++++|++|+|+++++.++++++.. ++||.|++....||.+...+ +..|
T Consensus 111 Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~---~~gD~Vlv~~P~y~~y~~~~---~~~g 184 (481)
T PTZ00377 111 YTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIG---DPSDGVMIPIPQYPLYSAAI---TLLG 184 (481)
T ss_pred cCcccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhcc---CCCCEEEECCCCchhHHHHH---HHcC
Confidence 3345578899999999985 5789999999999999999998751 58999998877777765544 4579
Q ss_pred cEEEEecCCCC
Q psy17798 95 FNVLGSNPGQG 105 (110)
Q Consensus 95 ~~v~~v~~~~~ 105 (110)
++++.+|++++
T Consensus 185 ~~~v~v~~~~~ 195 (481)
T PTZ00377 185 GKQVPYYLDEE 195 (481)
T ss_pred CEEEEEEeccc
Confidence 99999999853
No 72
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=98.97 E-value=2.7e-09 Score=78.34 Aligned_cols=73 Identities=12% Similarity=0.182 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHhC------------CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHh
Q psy17798 25 KAVEDARQEIATLIN------------CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEG 92 (110)
Q Consensus 25 ~~~~~~R~~la~~l~------------~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~ 92 (110)
.+..++|+++|++++ +++++|++|+|+++++.+++.++. ++||+|+++...|+.+... ++.
T Consensus 75 ~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~----~~gd~vlv~~P~y~~~~~~---~~~ 147 (412)
T PTZ00433 75 VGSPEAREAVATYWRNSFVHKESLKSTIKKDNVVLCSGVSHAILMALTALC----DEGDNILVPAPGFPHYETV---CKA 147 (412)
T ss_pred CCcHHHHHHHHHHHHhhccccccccCCCChhhEEEeCChHHHHHHHHHHhc----CCCCEEEEccCCcccHHHH---HHH
Confidence 457789999999885 578999999999999999999886 8999999887777776544 456
Q ss_pred CCcEEEEecCCC
Q psy17798 93 EGFNVLGSNPGQ 104 (110)
Q Consensus 93 ~g~~v~~v~~~~ 104 (110)
.|++++.+|+++
T Consensus 148 ~g~~~~~i~~~~ 159 (412)
T PTZ00433 148 YGIEMRFYNCRP 159 (412)
T ss_pred cCCEEEEEecCc
Confidence 799999999875
No 73
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=98.96 E-value=4e-09 Score=76.22 Aligned_cols=73 Identities=8% Similarity=0.059 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHh------CCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEE
Q psy17798 26 AVEDARQEIATLI------NCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLG 99 (110)
Q Consensus 26 ~~~~~R~~la~~l------~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~ 99 (110)
...++|+++|+++ ++++++|++|+|+++++.++++++. ++||.|++....|+.+.. ..+..|++++.
T Consensus 66 g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l~~~~~~~~----~~gd~v~v~~P~y~~~~~---~~~~~g~~~~~ 138 (368)
T PRK03317 66 DAVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQQLLQAFG----GPGRTALGFVPSYSMHPI---IARGTHTEWVE 138 (368)
T ss_pred chHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHHHHHHHHhc----CCCCEEEEeCCChHHHHH---HHHhcCCeeEE
Confidence 4568999999999 4689999999999999999999987 899999976555555443 34567888888
Q ss_pred ecCCCC
Q psy17798 100 SNPGQG 105 (110)
Q Consensus 100 v~~~~~ 105 (110)
+|.+++
T Consensus 139 ~~~~~~ 144 (368)
T PRK03317 139 GPRAAD 144 (368)
T ss_pred cccCCC
Confidence 887654
No 74
>PRK09148 aminotransferase; Validated
Probab=98.96 E-value=4.4e-09 Score=77.16 Aligned_cols=75 Identities=11% Similarity=0.091 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHh----C--CCCC-cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEE
Q psy17798 25 KAVEDARQEIATLI----N--CDPK-EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97 (110)
Q Consensus 25 ~~~~~~R~~la~~l----~--~~~~-~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v 97 (110)
.+..++|+++|+++ | ++++ +|++|+|+++++.+++.++. .+||+|+++...|+.+...+ +..|+++
T Consensus 68 ~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~----~~gd~Vl~~~P~y~~~~~~~---~~~g~~v 140 (405)
T PRK09148 68 KGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEGFANMAQAIT----APGDVILCPNPSYPIHAFGF---IMAGGVI 140 (405)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHhc----CCCCEEEEcCCCCcccHHHH---HhcCCEE
Confidence 45678999999987 3 5677 89999999999999999987 79999999888888876555 4579999
Q ss_pred EEecCCCCc
Q psy17798 98 LGSNPGQGG 106 (110)
Q Consensus 98 ~~v~~~~~G 106 (110)
+.+|+++++
T Consensus 141 ~~v~~~~~~ 149 (405)
T PRK09148 141 RSVPAEPDE 149 (405)
T ss_pred EEEeCCCCC
Confidence 999998654
No 75
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=98.95 E-value=2.2e-09 Score=78.23 Aligned_cols=89 Identities=17% Similarity=0.143 Sum_probs=67.0
Q ss_pred CCCCCcCChHHHHHHHHHHH-HHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHH
Q psy17798 10 GNPHSRTHAYGWESEKAVED-ARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCR 88 (110)
Q Consensus 10 ~n~~~~~~~~~~~~~~~~~~-~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~ 88 (110)
++|+. .+..+....+.+++ .|+.+++++|++..+|++++ +++|+..++.++. ++||+|+++..+|+++...+.
T Consensus 50 g~~~~-~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~v~~~s-gt~a~~~~l~~l~----~~Gd~Vl~~~~~~~~~~~~~~ 123 (402)
T cd00378 50 GYPGK-RYYGGCEYVDEIEDLAIERAKKLFGAEYANVQPHS-GSQANLAVYFALL----EPGDTIMGLDLSHGGHLTHGS 123 (402)
T ss_pred CCCCC-cccCCchHHHHHHHHHHHHHHHHhCCCceeeecCC-cHHHHHHHHHHhc----CCCCEEEEecCccCccccccc
Confidence 67775 45555555556666 67888999999877777765 5799999999986 899999999999988766544
Q ss_pred H--HHhCCcEEEEecCCC
Q psy17798 89 I--LEGEGFNVLGSNPGQ 104 (110)
Q Consensus 89 ~--l~~~g~~v~~v~~~~ 104 (110)
. ++..|.+++.++++.
T Consensus 124 ~~~~~~~g~~~~~~~~~~ 141 (402)
T cd00378 124 FTKVSASGKLFESVPYGV 141 (402)
T ss_pred cccccccceeEEEecCCc
Confidence 3 455788777777653
No 76
>PLN02409 serine--glyoxylate aminotransaminase
Probab=98.95 E-value=1.3e-08 Score=74.72 Aligned_cols=82 Identities=11% Similarity=0.101 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCC-CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798 20 GWESEKAVEDARQEIATLINCDP-KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL 98 (110)
Q Consensus 20 ~~~~~~~~~~~R~~la~~l~~~~-~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~ 98 (110)
+....+.++++|+.+++++++++ +.+++++++|++++.++.++. ++||+|+++..+|++... ...+++.|++++
T Consensus 37 ~~~~~~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~~----~~Gd~Vlv~~~~~~~~~~-~~~~~~~g~~v~ 111 (401)
T PLN02409 37 SPAFPALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNTL----SPGDKVVSFRIGQFSLLW-IDQMQRLNFDVD 111 (401)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhcC----CCCCEEEEeCCCchhHHH-HHHHHHcCCceE
Confidence 34567789999999999999975 568999999999998888765 899999999988987652 233467899999
Q ss_pred EecCCCCc
Q psy17798 99 GSNPGQGG 106 (110)
Q Consensus 99 ~v~~~~~G 106 (110)
.++.+.++
T Consensus 112 ~v~~~~~~ 119 (401)
T PLN02409 112 VVESPWGQ 119 (401)
T ss_pred EEECCCCC
Confidence 99987643
No 77
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=98.93 E-value=4.6e-09 Score=77.52 Aligned_cols=75 Identities=19% Similarity=0.146 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHhC--CC-CCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecC
Q psy17798 26 AVEDARQEIATLIN--CD-PKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNP 102 (110)
Q Consensus 26 ~~~~~R~~la~~l~--~~-~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~ 102 (110)
+..++|+.++++++ .+ +++|++|+|+++++.++++++. ++||.|++.+..|+. ....++..|++++.+|+
T Consensus 122 g~~~lr~~ia~~~~~~~~~~~~Iiit~G~~~al~~~~~~l~----~pgd~Vlv~~P~y~~---~~~~~~~~g~~~~~v~~ 194 (431)
T PRK15481 122 VSPELHAWAARWLRDDCPVAFEIDLTSGAIDAIERLLCAHL----LPGDSVAVEDPCFLS---SINMLRYAGFSASPVSV 194 (431)
T ss_pred CCHHHHHHHHHHHhhccCCcCeEEEecCcHHHHHHHHHHhC----CCCCEEEEeCCCcHH---HHHHHHHcCCeEEeecc
Confidence 45789999999987 33 5699999999999999999887 899999975544444 44455668999999999
Q ss_pred CCCcc
Q psy17798 103 GQGGN 107 (110)
Q Consensus 103 ~~~G~ 107 (110)
+++|.
T Consensus 195 ~~~g~ 199 (431)
T PRK15481 195 DAEGM 199 (431)
T ss_pred CCCCC
Confidence 87763
No 78
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=98.93 E-value=2.5e-09 Score=78.39 Aligned_cols=94 Identities=18% Similarity=0.193 Sum_probs=69.3
Q ss_pred CCCCCcCChHHHHHHHHHHH-HHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHH
Q psy17798 10 GNPHSRTHAYGWESEKAVED-ARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCR 88 (110)
Q Consensus 10 ~n~~~~~~~~~~~~~~~~~~-~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~ 88 (110)
+++++ .+..+....+.+++ +|+.+++++|+++++|++++| |+|+..++.++. ++||+|+++..+|+++...+.
T Consensus 56 ~~~~~-~~~~~~~~~~~~e~~~~~~la~~~g~~~~~i~~~sg-t~al~~~l~~l~----~~gd~Vl~~~~~~~~~~~~~~ 129 (416)
T PRK00011 56 GYPGK-RYYGGCEYVDVVEQLAIDRAKELFGAEYANVQPHSG-SQANAAVYFALL----KPGDTILGMDLAHGGHLTHGS 129 (416)
T ss_pred CCCCc-cccccchHHHHHHHHHHHHHHHHhCCCceeeecCCc-hHHHHHHHHHhc----CCCCEEEEeccccCCcccccc
Confidence 56665 45555555666766 899999999998877877765 679999998886 899999999999987654432
Q ss_pred HH--HhCCcEEEEecCCC-Ccccc
Q psy17798 89 IL--EGEGFNVLGSNPGQ-GGNFL 109 (110)
Q Consensus 89 ~l--~~~g~~v~~v~~~~-~G~~~ 109 (110)
.. ...|++++.+|++. ++.+|
T Consensus 130 ~~~~~~~g~~~~~~~~~~~~~~~d 153 (416)
T PRK00011 130 PVNFSGKLYNVVSYGVDEETGLID 153 (416)
T ss_pred ccccccceeeEeecCcCcccCCcC
Confidence 22 34578888888874 35443
No 79
>PRK07683 aminotransferase A; Validated
Probab=98.93 E-value=8.2e-09 Score=75.21 Aligned_cols=76 Identities=21% Similarity=0.209 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHhC------CCCC-cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEE
Q psy17798 25 KAVEDARQEIATLIN------CDPK-EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97 (110)
Q Consensus 25 ~~~~~~R~~la~~l~------~~~~-~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v 97 (110)
....++|+++|++++ ++++ +|++|+|+++|+.++++++. ++||+|+++...|+.+...+ +..|+++
T Consensus 65 ~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~----~~gd~Vl~~~p~y~~~~~~~---~~~g~~~ 137 (387)
T PRK07683 65 AGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDIAFRTIL----EPGTEVILPAPIYPGYEPII---RLCGAKP 137 (387)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhC----CCCCEEEEcCCCccchHHHH---HHcCCEE
Confidence 456789999999883 4788 99999999999999999876 79999999877777655444 4579999
Q ss_pred EEecCCCCcc
Q psy17798 98 LGSNPGQGGN 107 (110)
Q Consensus 98 ~~v~~~~~G~ 107 (110)
+.+|++++|.
T Consensus 138 ~~~~~~~~~~ 147 (387)
T PRK07683 138 VFIDTRSTGF 147 (387)
T ss_pred EEeecCcccC
Confidence 9999987654
No 80
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=98.92 E-value=4.8e-09 Score=78.46 Aligned_cols=76 Identities=16% Similarity=0.266 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHhC--------CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcE
Q psy17798 25 KAVEDARQEIATLIN--------CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFN 96 (110)
Q Consensus 25 ~~~~~~R~~la~~l~--------~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~ 96 (110)
.+..++|++||++++ +++++|++|+|+++++.+++.++. ++||.|+++...|+.+...+.. ..|++
T Consensus 86 ~G~~~LR~aiA~~l~~~~~~~~~v~~~~Iiit~Ga~~al~~l~~~l~----~pGd~Vlv~~P~Y~~~~~~~~~--~~g~~ 159 (468)
T PLN02450 86 HGLPAFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCLA----EPGDAFLLPTPYYPGFDRDLKW--RTGVE 159 (468)
T ss_pred CChHHHHHHHHHHHHHhhCCCCCcChHHeEEccChHHHHHHHHHHhC----CCCCEEEECCCCCCchHHHHhh--cCCcE
Confidence 467789999999985 588999999999999999999987 8999999887777776554321 36999
Q ss_pred EEEecCCC-Cc
Q psy17798 97 VLGSNPGQ-GG 106 (110)
Q Consensus 97 v~~v~~~~-~G 106 (110)
++.+|+++ +|
T Consensus 160 ~v~v~~~~~~~ 170 (468)
T PLN02450 160 IVPIHCSSSNG 170 (468)
T ss_pred EEEEecCCccC
Confidence 99999873 44
No 81
>PRK05942 aspartate aminotransferase; Provisional
Probab=98.92 E-value=5.7e-09 Score=76.18 Aligned_cols=74 Identities=14% Similarity=0.062 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHh----C--CCCC-cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEE
Q psy17798 25 KAVEDARQEIATLI----N--CDPK-EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97 (110)
Q Consensus 25 ~~~~~~R~~la~~l----~--~~~~-~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v 97 (110)
.+.+++|+++|+++ + ++++ +|++|+|+++++.+++.++. ++||+|+++...||.+...+ +..|+++
T Consensus 73 ~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~al~~~~~~~~----~~gd~Vlv~~P~y~~~~~~~---~~~g~~~ 145 (394)
T PRK05942 73 EGTASFRQAITDWYHRRYGVELDPDSEALPLLGSKEGLTHLALAYV----NPGDVVLVPSPAYPAHFRGP---LIAGAQI 145 (394)
T ss_pred CCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccChHHHHHHHHHHhC----CCCCEEEEcCCCCcchHHHH---HHcCCEE
Confidence 35678999999988 4 4677 48999999999999998876 89999999888888776554 3479999
Q ss_pred EEecCCCC
Q psy17798 98 LGSNPGQG 105 (110)
Q Consensus 98 ~~v~~~~~ 105 (110)
+.+|++.+
T Consensus 146 ~~v~~~~~ 153 (394)
T PRK05942 146 YPIILKPE 153 (394)
T ss_pred EEeecCCc
Confidence 99999854
No 82
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=98.91 E-value=5.6e-09 Score=76.65 Aligned_cols=74 Identities=20% Similarity=0.239 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHhC------CCCCc-EEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcE
Q psy17798 24 EKAVEDARQEIATLIN------CDPKE-IIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFN 96 (110)
Q Consensus 24 ~~~~~~~R~~la~~l~------~~~~~-i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~ 96 (110)
.+++.++|++||+++. .++++ |++|+|+++|+..++.++. .+||+|++++..||++..... -.|++
T Consensus 64 ~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~~~~a~~----~pGDeVlip~P~Y~~y~~~~~---~~gg~ 136 (393)
T COG0436 64 SAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFLALL----NPGDEVLIPDPGYPSYEAAVK---LAGGK 136 (393)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHHHHHHhc----CCCCEEEEeCCCCcCHHHHHH---hcCCE
Confidence 4578899999998873 45655 9999999999999999988 899999999999999877654 36999
Q ss_pred EEEecCCC
Q psy17798 97 VLGSNPGQ 104 (110)
Q Consensus 97 v~~v~~~~ 104 (110)
++.+|++.
T Consensus 137 ~v~v~l~~ 144 (393)
T COG0436 137 PVPVPLDE 144 (393)
T ss_pred EEEEeCCc
Confidence 99999863
No 83
>PRK06108 aspartate aminotransferase; Provisional
Probab=98.91 E-value=7.5e-09 Score=74.85 Aligned_cols=73 Identities=14% Similarity=0.171 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHh----C--CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798 25 KAVEDARQEIATLI----N--CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL 98 (110)
Q Consensus 25 ~~~~~~R~~la~~l----~--~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~ 98 (110)
.+.+++|+++|+++ + +++++|++|+|+++++.+++.++. ++||.|+++...|+.+...+ +..|++++
T Consensus 61 ~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~----~~gd~vl~~~p~y~~~~~~~---~~~g~~~~ 133 (382)
T PRK06108 61 LGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQALV----GPGDEVVAVTPLWPNLVAAP---KILGARVV 133 (382)
T ss_pred CCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHHHHHhc----CCCCEEEEeCCCccchHHHH---HHCCCEEE
Confidence 45678899999876 5 688999999999999999999886 79999999888888766544 55799999
Q ss_pred EecCCC
Q psy17798 99 GSNPGQ 104 (110)
Q Consensus 99 ~v~~~~ 104 (110)
.+|++.
T Consensus 134 ~v~~~~ 139 (382)
T PRK06108 134 CVPLDF 139 (382)
T ss_pred EeeCCC
Confidence 999974
No 84
>PLN02656 tyrosine transaminase
Probab=98.91 E-value=7.3e-09 Score=76.08 Aligned_cols=73 Identities=15% Similarity=0.154 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHhC------CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798 25 KAVEDARQEIATLIN------CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL 98 (110)
Q Consensus 25 ~~~~~~R~~la~~l~------~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~ 98 (110)
.+..++|++++++++ +++++|++|+|+++|+.+++.++. ++||+|++++..|+.+.... +..|++++
T Consensus 73 ~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~----~~gd~Vlv~~p~y~~~~~~~---~~~g~~~~ 145 (409)
T PLN02656 73 VGLPQARRAIAEYLSRDLPYKLSLDDVFITSGCTQAIDVALSMLA----RPGANILLPRPGFPIYELCA---AFRHLEVR 145 (409)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCcccEEEeCChHHHHHHHHHHHh----CCCCeEEEeCCCCCcHHHHH---HHcCCEEE
Confidence 466789999999984 578999999999999999999886 89999999998888765443 34699999
Q ss_pred EecCCC
Q psy17798 99 GSNPGQ 104 (110)
Q Consensus 99 ~v~~~~ 104 (110)
.+|+++
T Consensus 146 ~i~~~~ 151 (409)
T PLN02656 146 YVDLLP 151 (409)
T ss_pred EEeCCC
Confidence 999863
No 85
>PRK08912 hypothetical protein; Provisional
Probab=98.91 E-value=9.5e-09 Score=74.74 Aligned_cols=73 Identities=25% Similarity=0.210 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHh----C--CCCC-cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEE
Q psy17798 25 KAVEDARQEIATLI----N--CDPK-EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97 (110)
Q Consensus 25 ~~~~~~R~~la~~l----~--~~~~-~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v 97 (110)
.+..++|+++++++ + ++++ +|++|+|+++++..++.++. ++||+|+++...|+.+...+ +..|+++
T Consensus 63 ~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~----~~gd~Vlv~~p~y~~~~~~~---~~~g~~~ 135 (387)
T PRK08912 63 MGLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAAALLALV----EPGDEVVLFQPLYDAYLPLI---RRAGGVP 135 (387)
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHHHHHHHHhc----CCCCEEEEeCCCchhhHHHH---HHcCCEE
Confidence 34678999999876 3 5787 99999999999999998876 79999999887777665443 5679999
Q ss_pred EEecCCC
Q psy17798 98 LGSNPGQ 104 (110)
Q Consensus 98 ~~v~~~~ 104 (110)
+.+|+++
T Consensus 136 ~~~~~~~ 142 (387)
T PRK08912 136 RLVRLEP 142 (387)
T ss_pred EEEecCc
Confidence 9999875
No 86
>PRK06290 aspartate aminotransferase; Provisional
Probab=98.90 E-value=1e-08 Score=75.47 Aligned_cols=75 Identities=12% Similarity=0.098 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHh----C---CCCC-cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcE
Q psy17798 25 KAVEDARQEIATLI----N---CDPK-EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFN 96 (110)
Q Consensus 25 ~~~~~~R~~la~~l----~---~~~~-~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~ 96 (110)
.+..++|+++|+++ | ++++ +|++|+|+++++..++.++. ++||.|++....|+.+.... +..|++
T Consensus 81 ~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~al~~~~~~~~----~~gd~Vlv~~P~y~~~~~~~---~~~g~~ 153 (410)
T PRK06290 81 NGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPALAMLPSCFI----NPGDVTLMTVPGYPVTGTHT---KYYGGE 153 (410)
T ss_pred CCcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHHHHHHHHHHHhC----CCCCEEEEeCCCCccHHHHH---HHcCCE
Confidence 35679999999987 3 6676 79999999999999999887 89999998777776655433 557999
Q ss_pred EEEecCCCCc
Q psy17798 97 VLGSNPGQGG 106 (110)
Q Consensus 97 v~~v~~~~~G 106 (110)
++.+|+++++
T Consensus 154 v~~v~~~~~~ 163 (410)
T PRK06290 154 VYNLPLLEEN 163 (410)
T ss_pred EEEEecCCCc
Confidence 9999998653
No 87
>PRK07568 aspartate aminotransferase; Provisional
Probab=98.90 E-value=1e-08 Score=74.65 Aligned_cols=76 Identities=14% Similarity=0.306 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHh-----CCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEE
Q psy17798 25 KAVEDARQEIATLI-----NCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLG 99 (110)
Q Consensus 25 ~~~~~~R~~la~~l-----~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~ 99 (110)
.+..++|+++++++ ++++++|++|+|+++++++++.++. ++||+|+++...|+.+.. .++..|++++.
T Consensus 66 ~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~----~~gd~Vl~~~p~y~~~~~---~~~~~g~~~~~ 138 (397)
T PRK07568 66 QGIPELREAFAKYYKKWGIDVEPDEILITNGGSEAILFAMMAIC----DPGDEILVPEPFYANYNG---FATSAGVKIVP 138 (397)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCcceEEEcCChHHHHHHHHHHhc----CCCCEEEEecCCCccHHH---HHHHcCCEEEE
Confidence 46788999999998 4789999999999999999998875 799999998766665443 23567999999
Q ss_pred ecCC-CCcc
Q psy17798 100 SNPG-QGGN 107 (110)
Q Consensus 100 v~~~-~~G~ 107 (110)
+|++ ++|.
T Consensus 139 v~~~~~~g~ 147 (397)
T PRK07568 139 VTTKIEEGF 147 (397)
T ss_pred eecCcccCC
Confidence 9987 3453
No 88
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=98.89 E-value=1e-08 Score=75.13 Aligned_cols=73 Identities=14% Similarity=0.212 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHhCC------CCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798 25 KAVEDARQEIATLINC------DPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL 98 (110)
Q Consensus 25 ~~~~~~R~~la~~l~~------~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~ 98 (110)
....++|+++|++++. ++++|++|+|+|+|+.+++.++. ++||+|+++..+|+.+... .+..|++++
T Consensus 73 ~g~~~lr~~ia~~l~~~~~~~~~~~~ii~t~G~t~al~~~~~~l~----~~gd~Vlv~~p~y~~~~~~---~~~~g~~~~ 145 (403)
T TIGR01265 73 VGALAAREAVAEYLSSDLPGKLTADDVVLTSGCSQAIEICIEALA----NPGANILVPRPGFPLYDTR---AAFSGLEVR 145 (403)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCHHHEEEecChHHHHHHHHHHhC----CCCCEEEEeCCCchhHHHH---HHHcCCEEE
Confidence 4577899999999974 67899999999999999999987 7999999988887765443 356799999
Q ss_pred EecCCC
Q psy17798 99 GSNPGQ 104 (110)
Q Consensus 99 ~v~~~~ 104 (110)
.+++++
T Consensus 146 ~~~~~~ 151 (403)
T TIGR01265 146 LYDLLP 151 (403)
T ss_pred EecCCc
Confidence 998754
No 89
>PRK08363 alanine aminotransferase; Validated
Probab=98.88 E-value=1.2e-08 Score=74.50 Aligned_cols=75 Identities=11% Similarity=0.112 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHh------CCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798 25 KAVEDARQEIATLI------NCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL 98 (110)
Q Consensus 25 ~~~~~~R~~la~~l------~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~ 98 (110)
....++|+++|+++ ++++++|++|+|+++|+.+++.++. ++||+|+++...|+.+.... +..|.+++
T Consensus 70 ~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~----~~gd~Vl~~~p~y~~~~~~~---~~~g~~~v 142 (398)
T PRK08363 70 EGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEALQLIFGALL----DPGDEILIPGPSYPPYTGLV---KFYGGVPV 142 (398)
T ss_pred CCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhC----CCCCEEEEcCCCCcchHHHH---HHcCCEEE
Confidence 45678999999987 3588999999999999999999886 89999999888888776544 45688877
Q ss_pred Ee-cCCCCc
Q psy17798 99 GS-NPGQGG 106 (110)
Q Consensus 99 ~v-~~~~~G 106 (110)
.+ +++++|
T Consensus 143 ~~~~~~~~~ 151 (398)
T PRK08363 143 EYRTIEEEG 151 (398)
T ss_pred EeccccccC
Confidence 77 565555
No 90
>PLN00175 aminotransferase family protein; Provisional
Probab=98.88 E-value=1.3e-08 Score=74.99 Aligned_cols=74 Identities=22% Similarity=0.217 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHhC------CCCC-cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEE
Q psy17798 25 KAVEDARQEIATLIN------CDPK-EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97 (110)
Q Consensus 25 ~~~~~~R~~la~~l~------~~~~-~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v 97 (110)
.+..++|++++++++ ++++ +|++|+|+++|+.+++.++. ++||+|++.+..|+.+... ++..|+++
T Consensus 91 ~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~----~~gd~Vlv~~P~y~~~~~~---~~~~g~~~ 163 (413)
T PLN00175 91 FGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAATILGLI----NPGDEVILFAPFYDSYEAT---LSMAGAKI 163 (413)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHHHHHHHhC----CCCCEEEEeCCCchhHHHH---HHHcCCEE
Confidence 357789999998874 5676 79999999999999999876 8999999887777665544 35579999
Q ss_pred EEecCCCC
Q psy17798 98 LGSNPGQG 105 (110)
Q Consensus 98 ~~v~~~~~ 105 (110)
+.+|++++
T Consensus 164 ~~v~~~~~ 171 (413)
T PLN00175 164 KTVTLRPP 171 (413)
T ss_pred EEEECCcc
Confidence 99999753
No 91
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=98.88 E-value=6.8e-09 Score=77.31 Aligned_cols=76 Identities=18% Similarity=0.261 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHhC--------CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCc
Q psy17798 24 EKAVEDARQEIATLIN--------CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGF 95 (110)
Q Consensus 24 ~~~~~~~R~~la~~l~--------~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~ 95 (110)
..+..++|+++|++++ ++|++|++|+|+++++.+++.++. .+||.|+++...|+.+...+. .+.|+
T Consensus 94 ~~G~~~LR~aiA~~l~~~~~~~~~v~p~~Ivit~G~t~al~~l~~~l~----~pGD~Vlv~~P~Y~~f~~~~~--~~~g~ 167 (447)
T PLN02607 94 YHGLKSFRQAMASFMEQIRGGKARFDPDRIVLTAGATAANELLTFILA----DPGDALLVPTPYYPGFDRDLR--WRTGV 167 (447)
T ss_pred CcchHHHHHHHHHHHHHhcCCCCCcCHHHeEEcCChHHHHHHHHHHhC----CCCCEEEEcCCCCcchHHHHH--hcCCc
Confidence 3478899999999985 578999999999999999999887 899999999888888765442 13689
Q ss_pred EEEEecCCCC
Q psy17798 96 NVLGSNPGQG 105 (110)
Q Consensus 96 ~v~~v~~~~~ 105 (110)
+++.|+++++
T Consensus 168 ~vv~v~~~~~ 177 (447)
T PLN02607 168 KIVPIHCDSS 177 (447)
T ss_pred EEEEEeCCCC
Confidence 9999998753
No 92
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=98.88 E-value=1.7e-08 Score=72.63 Aligned_cols=76 Identities=13% Similarity=0.082 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHh----C--CCCC-cEEEeCChHHHHHHHHHHhHHhhccCC---CEEEEcCCCChhHHHHHHHHHhCC
Q psy17798 25 KAVEDARQEIATLI----N--CDPK-EIIFTSGATESNNIAVKGVARFYKEKK---KHVITTQTEHKCVLDSCRILEGEG 94 (110)
Q Consensus 25 ~~~~~~R~~la~~l----~--~~~~-~i~~t~gat~a~~~i~~~l~~~~~~~g---~~vl~~~~e~ps~~~~~~~l~~~g 94 (110)
.+..++|+++++++ | ++++ +|++|+|++++++.++.++. ++| |+|+++...|+.+...+ +..|
T Consensus 36 ~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~~~~~----~~g~~~d~Vl~~~p~y~~~~~~~---~~~g 108 (350)
T TIGR03537 36 LGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFPLVFI----DPEEDRRRVIFGTPGYPVYERGA---LFAG 108 (350)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHHc----CCCCCCceEEEcCCCCcchHHHH---HhcC
Confidence 35678999999987 5 5787 89999999999999998876 565 69998887777766555 4579
Q ss_pred cEEEEecCCC-Ccc
Q psy17798 95 FNVLGSNPGQ-GGN 107 (110)
Q Consensus 95 ~~v~~v~~~~-~G~ 107 (110)
++++.+|+++ +|.
T Consensus 109 ~~~~~v~~~~~~~~ 122 (350)
T TIGR03537 109 GEPTAVKLKKEDGF 122 (350)
T ss_pred CEEEEcccCcccCC
Confidence 9999999974 453
No 93
>PRK07550 hypothetical protein; Provisional
Probab=98.88 E-value=1.5e-08 Score=73.63 Aligned_cols=73 Identities=16% Similarity=0.090 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHhC------CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798 25 KAVEDARQEIATLIN------CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL 98 (110)
Q Consensus 25 ~~~~~~R~~la~~l~------~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~ 98 (110)
.+.+++|++++++++ .++++|++|+|+++++.+++.++. ++||+|++....|+.+.. .++..|++++
T Consensus 67 ~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~----~~gd~Vlv~~p~y~~~~~---~~~~~g~~~~ 139 (386)
T PRK07550 67 EGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFWAAMVTLA----GAGDEVILPLPWYFNHKM---WLDMLGIRPV 139 (386)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhc----CCCCEEEEcCCCCcchHH---HHHhcCCEEE
Confidence 357788999998874 578999999999999999999886 799999987766666544 3356899999
Q ss_pred EecCCC
Q psy17798 99 GSNPGQ 104 (110)
Q Consensus 99 ~v~~~~ 104 (110)
.+++++
T Consensus 140 ~v~~~~ 145 (386)
T PRK07550 140 YLPCDE 145 (386)
T ss_pred EEecCC
Confidence 999985
No 94
>PRK08175 aminotransferase; Validated
Probab=98.87 E-value=1.2e-08 Score=74.47 Aligned_cols=74 Identities=18% Similarity=0.175 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHhC------CCCC-cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798 26 AVEDARQEIATLIN------CDPK-EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL 98 (110)
Q Consensus 26 ~~~~~R~~la~~l~------~~~~-~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~ 98 (110)
+..++|++++++++ ++++ +|++|+|+++++++++.++. ++||+|+++...|+.+...+ +..|++++
T Consensus 68 G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~----~~gd~Vlv~~P~y~~~~~~~---~~~g~~~~ 140 (395)
T PRK08175 68 GIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGLAHLMLATL----DHGDTVLVPNPSYPIHIYGA---VIAGAQVR 140 (395)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHhC----CCCCEEEEcCCCCcchHHHH---HHcCCeEE
Confidence 46789999999872 5676 79999999999999998876 89999999888888776655 34699999
Q ss_pred EecCCCCc
Q psy17798 99 GSNPGQGG 106 (110)
Q Consensus 99 ~v~~~~~G 106 (110)
.+|+++++
T Consensus 141 ~v~~~~~~ 148 (395)
T PRK08175 141 SVPLVEGV 148 (395)
T ss_pred EEecccCC
Confidence 99998654
No 95
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=98.87 E-value=1.6e-08 Score=73.42 Aligned_cols=75 Identities=15% Similarity=0.049 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhC------CCCC-cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798 26 AVEDARQEIATLIN------CDPK-EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL 98 (110)
Q Consensus 26 ~~~~~R~~la~~l~------~~~~-~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~ 98 (110)
+++++|+++|++++ ++++ +|++|+|+++++++++.++. ++||+|++++..|+.+.... +..|++++
T Consensus 70 G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~i~~~~~~~~----~~gd~Vl~~~P~y~~~~~~~---~~~g~~~~ 142 (385)
T PRK09276 70 GMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEGIAHIPLAFV----NPGDVVLVPDPGYPVYKIGT---IFAGGEPY 142 (385)
T ss_pred CcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHhC----CCCCEEEEcCCCCcChHHHH---HHcCCEEE
Confidence 56789999999883 4666 59999999999999999886 89999999887777665443 45799999
Q ss_pred EecCCCC-cc
Q psy17798 99 GSNPGQG-GN 107 (110)
Q Consensus 99 ~v~~~~~-G~ 107 (110)
.+|++.+ |.
T Consensus 143 ~v~~~~~~g~ 152 (385)
T PRK09276 143 FMPLKEENGF 152 (385)
T ss_pred EEecCCCCCC
Confidence 9999753 54
No 96
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=98.87 E-value=1.4e-08 Score=73.73 Aligned_cols=73 Identities=15% Similarity=0.166 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHhC--------CCCCcEEEeCChHHHHHHHHHHhHHhhccCCC-EEEEcCCCChhHHHHHHHHHhCCcE
Q psy17798 26 AVEDARQEIATLIN--------CDPKEIIFTSGATESNNIAVKGVARFYKEKKK-HVITTQTEHKCVLDSCRILEGEGFN 96 (110)
Q Consensus 26 ~~~~~R~~la~~l~--------~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~-~vl~~~~e~ps~~~~~~~l~~~g~~ 96 (110)
+..++|+++|++++ +++++|++|+|+++++..++.++. .+|+ +|++....|+.+. ..++..|++
T Consensus 67 G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~al~~~~~~~~----~~g~~~Vlv~~P~y~~~~---~~~~~~g~~ 139 (374)
T PRK02610 67 GHEALKQAIAEYVNESAAGSSQITPANISVGNGSDELIRSLLIATC----LGGEGSILVAEPTFSMYG---ILAQTLGIP 139 (374)
T ss_pred chHHHHHHHHHHhCccccccCCCCHHHEEEcCChHHHHHHHHHHHc----CCCCCeEEEcCCChHHHH---HHHHHcCCE
Confidence 46789999999997 789999999999999998877765 4665 7887555554444 444667999
Q ss_pred EEEecCCCC
Q psy17798 97 VLGSNPGQG 105 (110)
Q Consensus 97 v~~v~~~~~ 105 (110)
++.+|++++
T Consensus 140 ~~~~~~~~~ 148 (374)
T PRK02610 140 VVRVGRDPE 148 (374)
T ss_pred EEEecCCcc
Confidence 999998753
No 97
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=98.86 E-value=1.3e-08 Score=73.87 Aligned_cols=74 Identities=14% Similarity=0.044 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHhC------CCCC-cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEE
Q psy17798 25 KAVEDARQEIATLIN------CDPK-EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97 (110)
Q Consensus 25 ~~~~~~R~~la~~l~------~~~~-~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v 97 (110)
.+..++|+++|++++ ++++ +|++|+|++++++++++++. ++||+|++....|+.+...+ +..|+++
T Consensus 67 ~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~l~~~~~~~~----~~gd~vlv~~P~y~~~~~~~---~~~G~~v 139 (383)
T TIGR03540 67 EGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAHIPLAFV----NPGDIVLVPDPGYPVYRIGT---LFAGGEP 139 (383)
T ss_pred CCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHHHHHHHHHhC----CCCCEEEEeCCCCcchHHHH---HhcCCEE
Confidence 356789999999874 3565 69999999999999999886 89999999888887766544 4579999
Q ss_pred EEecCCCC
Q psy17798 98 LGSNPGQG 105 (110)
Q Consensus 98 ~~v~~~~~ 105 (110)
+.+|++++
T Consensus 140 ~~v~~~~~ 147 (383)
T TIGR03540 140 YEMPLKEE 147 (383)
T ss_pred EEEecCcc
Confidence 99999854
No 98
>PRK06348 aspartate aminotransferase; Provisional
Probab=98.86 E-value=1.7e-08 Score=73.50 Aligned_cols=71 Identities=18% Similarity=0.123 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHh------CCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEE
Q psy17798 26 AVEDARQEIATLI------NCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLG 99 (110)
Q Consensus 26 ~~~~~R~~la~~l------~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~ 99 (110)
+..++|+++|+++ ++++++|++|+|+++|+.+++.++. ++||+|++....|+.+...+ +..|.+++.
T Consensus 67 G~~~lr~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~----~~gd~vlv~~p~y~~~~~~~---~~~g~~~~~ 139 (384)
T PRK06348 67 GDVELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLALQSIL----DPGDEVIIHEPYFTPYKDQI---EMVGGKPII 139 (384)
T ss_pred CcHHHHHHHHHHHHHHhCCCCChhhEEEcCChHHHHHHHHHHhc----CCCCEEEEeCCCCcchHHHH---HHcCCEEEE
Confidence 4568999999988 3689999999999999999999987 79999998776666655544 456889999
Q ss_pred ecCC
Q psy17798 100 SNPG 103 (110)
Q Consensus 100 v~~~ 103 (110)
+|++
T Consensus 140 ~~~~ 143 (384)
T PRK06348 140 LETY 143 (384)
T ss_pred ecCC
Confidence 9875
No 99
>PRK08636 aspartate aminotransferase; Provisional
Probab=98.85 E-value=4.5e-09 Score=76.92 Aligned_cols=73 Identities=21% Similarity=0.179 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHh----C--CCCC-cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcE
Q psy17798 24 EKAVEDARQEIATLI----N--CDPK-EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFN 96 (110)
Q Consensus 24 ~~~~~~~R~~la~~l----~--~~~~-~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~ 96 (110)
..+..++|+++|+++ + ++++ +|++|+|+++++.++++++. ++||.|++.+..|+.+.. .++..|++
T Consensus 70 ~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~----~~gd~Vlv~~P~y~~~~~---~~~~~g~~ 142 (403)
T PRK08636 70 SKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEGYVHLVQAIT----NPGDVAIVPDPAYPIHSQ---AFILAGGN 142 (403)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHHHHHHHHHhC----CCCCEEEEcCCCCcchHH---HHHhcCCE
Confidence 356778999999987 4 5677 79999999999999999987 899999987666665544 44557999
Q ss_pred EEEecCC
Q psy17798 97 VLGSNPG 103 (110)
Q Consensus 97 v~~v~~~ 103 (110)
++.+|++
T Consensus 143 ~~~v~~~ 149 (403)
T PRK08636 143 VHKMPLE 149 (403)
T ss_pred EEEEecc
Confidence 9999885
No 100
>PRK05764 aspartate aminotransferase; Provisional
Probab=98.85 E-value=2e-08 Score=73.05 Aligned_cols=73 Identities=19% Similarity=0.233 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHh------CCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEE
Q psy17798 26 AVEDARQEIATLI------NCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLG 99 (110)
Q Consensus 26 ~~~~~R~~la~~l------~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~ 99 (110)
...++|+.+|+++ ++++++|++|+|+++++..++.++. ++||+|+++...|+.+.... +..|++++.
T Consensus 69 g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~----~~gd~vl~~~p~y~~~~~~~---~~~g~~~~~ 141 (393)
T PRK05764 69 GIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFMALL----DPGDEVIIPAPYWVSYPEMV---KLAGGVPVF 141 (393)
T ss_pred ChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHHHHHHHHhc----CCCCEEEecCCCCcchHHHH---HHcCCEEEE
Confidence 4678999999987 3578999999999999999999876 79999999988888765543 456999999
Q ss_pred ecCCCC
Q psy17798 100 SNPGQG 105 (110)
Q Consensus 100 v~~~~~ 105 (110)
+|++++
T Consensus 142 ~~~~~~ 147 (393)
T PRK05764 142 VPTGEE 147 (393)
T ss_pred EecCcc
Confidence 999743
No 101
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=98.84 E-value=3.5e-08 Score=71.95 Aligned_cols=74 Identities=16% Similarity=0.088 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798 25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ 104 (110)
Q Consensus 25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~ 104 (110)
+...++++.+|+++|++ ++++|+|+|+|+++++.++. +++||+||++..+|+++..++ ...|++++.+++++
T Consensus 33 ~~~~~le~~la~~~g~~--~~v~~~sgt~al~lal~al~---~~~Gd~Viv~~~~~~~~~~~~---~~~G~~~v~vd~~~ 104 (379)
T PRK11658 33 PKNQALEQAFCQLTGNQ--HAIAVSSATAGMHITLMALG---IGPGDEVITPSLTWVSTLNMI---VLLGATPVMVDVDR 104 (379)
T ss_pred HhHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHHcC---CCCCCEEEECCCcHHHHHHHH---HHcCCEEEEEecCC
Confidence 35789999999999985 68899999999999999883 279999999999999987655 34799999999987
Q ss_pred Cc
Q psy17798 105 GG 106 (110)
Q Consensus 105 ~G 106 (110)
++
T Consensus 105 ~~ 106 (379)
T PRK11658 105 DT 106 (379)
T ss_pred Cc
Confidence 64
No 102
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=98.84 E-value=1.6e-08 Score=74.88 Aligned_cols=72 Identities=15% Similarity=0.162 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHhC------CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798 25 KAVEDARQEIATLIN------CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL 98 (110)
Q Consensus 25 ~~~~~~R~~la~~l~------~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~ 98 (110)
..+.++|+++|++++ +++++|++|+|+++|+.+++.++. ++||+|+++...|+.+.... ...|++++
T Consensus 94 ~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al~l~~~~l~----~~Gd~Vlv~~P~y~~y~~~~---~~~g~~~~ 166 (430)
T PLN00145 94 VGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAIEIIMSVLA----QPGANILLPRPGYPLYEARA---VFSGLEVR 166 (430)
T ss_pred ccCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHHHHHHHHhc----CCCCEEEEcCCCCccHHHHH---HHcCCEEE
Confidence 467899999999984 478999999999999999999986 79999999888888765433 34688998
Q ss_pred EecCC
Q psy17798 99 GSNPG 103 (110)
Q Consensus 99 ~v~~~ 103 (110)
.+++.
T Consensus 167 ~~~~~ 171 (430)
T PLN00145 167 HFDLL 171 (430)
T ss_pred EeeCC
Confidence 88864
No 103
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.84 E-value=2.6e-08 Score=73.99 Aligned_cols=81 Identities=17% Similarity=0.186 Sum_probs=67.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHH-HHhCCc
Q psy17798 17 HAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRI-LEGEGF 95 (110)
Q Consensus 17 ~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~-l~~~g~ 95 (110)
|..++...+..+++++.+|++.++.. .++|+|+++|+++++.++. ++||+||++..+|++....+.. +++.|+
T Consensus 56 ~~y~R~~~p~~~~le~~lA~l~g~~~--av~~sSGt~Al~~al~~ll----~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi 129 (433)
T PRK08134 56 HVYSRISNPTVAVLEERVAALEGGVG--AIATASGQAALHLAIATLM----GAGSHIVASSALYGGSHNLLHYTLRRFGI 129 (433)
T ss_pred ceeecCcChHHHHHHHHHHHHhCCCc--EEEeCCHHHHHHHHHHHHh----CCCCEEEEeCCccHHHHHHHHHHHhhCCe
Confidence 44445555779999999999999764 6999999999999998885 7999999999999987766544 467899
Q ss_pred EEEEecCC
Q psy17798 96 NVLGSNPG 103 (110)
Q Consensus 96 ~v~~v~~~ 103 (110)
++++++++
T Consensus 130 ~v~~vd~~ 137 (433)
T PRK08134 130 ETTFVKPG 137 (433)
T ss_pred EEEEECCC
Confidence 99999875
No 104
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=98.83 E-value=1.4e-08 Score=74.30 Aligned_cols=73 Identities=15% Similarity=0.248 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHhC-----CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEE
Q psy17798 25 KAVEDARQEIATLIN-----CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLG 99 (110)
Q Consensus 25 ~~~~~~R~~la~~l~-----~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~ 99 (110)
....++|+++|++++ +++++|++|+|+++++.+++.++. ++||+|+++...|+.+. ..++..|++++.
T Consensus 73 ~g~~~lr~aia~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~----~~gd~v~i~~P~y~~~~---~~~~~~g~~v~~ 145 (401)
T TIGR01264 73 VGALSAREAIASYYHNPDGPIEADDVVLCSGCSHAIEMCIAALA----NAGQNILVPRPGFPLYE---TLAESMGIEVKL 145 (401)
T ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHEEECcChHHHHHHHHHHhC----CCCCEEEEeCCCChhHH---HHHHHcCCEEEE
Confidence 356789999999997 688999999999999999999887 79999998766555443 344667999999
Q ss_pred ecCCC
Q psy17798 100 SNPGQ 104 (110)
Q Consensus 100 v~~~~ 104 (110)
++++.
T Consensus 146 ~~~~~ 150 (401)
T TIGR01264 146 YNLLP 150 (401)
T ss_pred eecCC
Confidence 98864
No 105
>PRK14808 histidinol-phosphate aminotransferase; Provisional
Probab=98.83 E-value=3e-08 Score=71.14 Aligned_cols=73 Identities=10% Similarity=0.013 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhC---CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecC
Q psy17798 26 AVEDARQEIATLIN---CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNP 102 (110)
Q Consensus 26 ~~~~~R~~la~~l~---~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~ 102 (110)
...++|+++|++++ +++++|++|+|+++++.++++++ ++|++.+ |++......++..|++++.+|+
T Consensus 57 ~~~~Lr~aia~~~~~~~~~~~~i~it~Ga~~~i~~~~~~~--------d~v~v~~---P~y~~~~~~~~~~g~~~~~v~~ 125 (335)
T PRK14808 57 PDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLMF--------DRSVFFP---PTYSCYRIFAKAVGAKFLEVPL 125 (335)
T ss_pred ChHHHHHHHHHHhCCCCCCcceEEEcCCHHHHHHHHHHHh--------CcEEECC---CCHHHHHHHHHHcCCeEEEecC
Confidence 35789999999998 88999999999999999998764 3577655 5544444444667999999999
Q ss_pred CCCcccc
Q psy17798 103 GQGGNFL 109 (110)
Q Consensus 103 ~~~G~~~ 109 (110)
++++.++
T Consensus 126 ~~~~~~~ 132 (335)
T PRK14808 126 TKDLRIP 132 (335)
T ss_pred CCcCCCC
Confidence 8776553
No 106
>PRK06207 aspartate aminotransferase; Provisional
Probab=98.82 E-value=4.1e-08 Score=72.08 Aligned_cols=72 Identities=18% Similarity=0.183 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHh----C--CCC-CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEE
Q psy17798 25 KAVEDARQEIATLI----N--CDP-KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97 (110)
Q Consensus 25 ~~~~~~R~~la~~l----~--~~~-~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v 97 (110)
.+..++|+++|+++ | +++ ++|++|+|+++++.++++++. ++||+|++....|+.+.. .++..|+++
T Consensus 78 ~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~~~~~~l~----~~Gd~Vlv~~P~y~~~~~---~~~~~g~~v 150 (405)
T PRK06207 78 RGDADIRELLAARLAAFTGAPVDAADELIITPGTQGALFLAVAATV----ARGDKVAIVQPDYFANRK---LVEFFEGEM 150 (405)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhc----CCCCEEEEeCCCchhHHH---HHHHcCCEE
Confidence 34567888887776 6 467 899999999999999999887 899999987777766553 345679999
Q ss_pred EEecCC
Q psy17798 98 LGSNPG 103 (110)
Q Consensus 98 ~~v~~~ 103 (110)
+.+|++
T Consensus 151 ~~v~~~ 156 (405)
T PRK06207 151 VPVQLD 156 (405)
T ss_pred EEEecc
Confidence 999986
No 107
>PRK08068 transaminase; Reviewed
Probab=98.82 E-value=2.6e-08 Score=72.58 Aligned_cols=74 Identities=8% Similarity=-0.006 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHh----C--CCCC-cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEE
Q psy17798 25 KAVEDARQEIATLI----N--CDPK-EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97 (110)
Q Consensus 25 ~~~~~~R~~la~~l----~--~~~~-~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v 97 (110)
.+..++|+++|+++ + ++++ +|++|+|+++++.+++.++. ++||+|++....|+.+.... +..|+++
T Consensus 70 ~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~l~~~~~~~~----~~gd~vlv~~P~y~~~~~~~---~~~g~~~ 142 (389)
T PRK08068 70 RGYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAGLVELPQCLM----NPGDTILVPDPGYPDYLSGV---ALARAQF 142 (389)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhC----CCCCEEEEcCCCCcchHHHH---HhcCCEE
Confidence 45678999999987 4 6787 89999999999999988876 89999998777776665443 4579999
Q ss_pred EEecCCCC
Q psy17798 98 LGSNPGQG 105 (110)
Q Consensus 98 ~~v~~~~~ 105 (110)
+.+|++++
T Consensus 143 ~~i~~~~~ 150 (389)
T PRK08068 143 ETMPLIAE 150 (389)
T ss_pred EEeecccc
Confidence 99999854
No 108
>PLN02368 alanine transaminase
Probab=98.82 E-value=1.7e-08 Score=74.38 Aligned_cols=76 Identities=20% Similarity=0.253 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHh----C--CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEE
Q psy17798 24 EKAVEDARQEIATLI----N--CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97 (110)
Q Consensus 24 ~~~~~~~R~~la~~l----~--~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v 97 (110)
..++.++|++||+++ | +++++|++|+|+++++.+++.++.. ++||.|++....||.+.... +..|+++
T Consensus 106 ~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~---~pGd~Vli~~P~Y~~y~~~~---~~~g~~~ 179 (407)
T PLN02368 106 SRGLPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIR---GEKDGVLVPVPQYPLYSATI---SLLGGTL 179 (407)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHcC---CCCCEEEEeCCCCccHHHHH---HHcCCEE
Confidence 346789999999988 4 5789999999999999999988751 58999999887777776544 4578999
Q ss_pred EEecCCCC
Q psy17798 98 LGSNPGQG 105 (110)
Q Consensus 98 ~~v~~~~~ 105 (110)
+.+|++++
T Consensus 180 v~v~~~~~ 187 (407)
T PLN02368 180 VPYYLEES 187 (407)
T ss_pred EEEecccc
Confidence 99998753
No 109
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=98.81 E-value=7.2e-08 Score=70.10 Aligned_cols=83 Identities=18% Similarity=0.219 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccC--CCEEEEcCCCChhHHHHHHHH-HhCCcEEEE
Q psy17798 23 SEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEK--KKHVITTQTEHKCVLDSCRIL-EGEGFNVLG 99 (110)
Q Consensus 23 ~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~--g~~vl~~~~e~ps~~~~~~~l-~~~g~~v~~ 99 (110)
..+..+++++.+++++++++++++|+++++.+.+.++.++.. .+ ||+|++++.+|+++..+|..+ +..|++++.
T Consensus 62 ~~~~~~~~~~~la~~~g~~~~~v~~~~~g~~~~~~~~~~~~~---~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~ 138 (398)
T cd00613 62 RLQALFELQTMLCELTGMDVANASLQDEATAAAEAAGLAAIR---AYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVE 138 (398)
T ss_pred HHHHHHHHHHHHHHHHCCCccceeccCchHHHHHHHHHHHHh---cccCCCEEEEcCccCcchHHHHHHhcccCCcEEEE
Confidence 446778899999999999888898888766555544444432 44 999999999999999998877 456799999
Q ss_pred ecCCCCccc
Q psy17798 100 SNPGQGGNF 108 (110)
Q Consensus 100 v~~~~~G~~ 108 (110)
+|+++++.+
T Consensus 139 v~~~~~~~~ 147 (398)
T cd00613 139 VPSDEGGTV 147 (398)
T ss_pred eccCCCCCc
Confidence 998765543
No 110
>PRK08637 hypothetical protein; Provisional
Probab=98.81 E-value=1.5e-08 Score=73.90 Aligned_cols=79 Identities=8% Similarity=0.039 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhC-----CCC---CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH
Q psy17798 19 YGWESEKAVEDARQEIATLIN-----CDP---KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL 90 (110)
Q Consensus 19 ~~~~~~~~~~~~R~~la~~l~-----~~~---~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l 90 (110)
+++....+..++|+.+++++. .++ ++|++|+|+++++.+++.++. ++||+|++....|+.+.....
T Consensus 38 ~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~----~~gd~Vlv~~P~y~~~~~~~~-- 111 (388)
T PRK08637 38 FPYAPPQGIPELRDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSLVADLFV----DQGDTVLLPDHNWGNYKLTFN-- 111 (388)
T ss_pred cCCCCCCCCHHHHHHHHHHHhccCccccccccceeeEccchHHHHHHHHHHhc----CCCCEEEEcCCCCccHHHHHH--
Confidence 344456678899999998773 232 579999999999999999887 899999986666666554322
Q ss_pred HhCCcEEEEecCC
Q psy17798 91 EGEGFNVLGSNPG 103 (110)
Q Consensus 91 ~~~g~~v~~v~~~ 103 (110)
...|++++.+|++
T Consensus 112 ~~~g~~vv~v~~~ 124 (388)
T PRK08637 112 TRRGAEIVTYPIF 124 (388)
T ss_pred HhcCCEEEEeccc
Confidence 2369999999983
No 111
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=98.80 E-value=2.7e-08 Score=72.58 Aligned_cols=74 Identities=18% Similarity=0.135 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHh--------CCCCC-cEEEeCChHHHHHHHHHHhHHhhccCCCE--EEEcCCCChhHHHHHHHHHhC
Q psy17798 25 KAVEDARQEIATLI--------NCDPK-EIIFTSGATESNNIAVKGVARFYKEKKKH--VITTQTEHKCVLDSCRILEGE 93 (110)
Q Consensus 25 ~~~~~~R~~la~~l--------~~~~~-~i~~t~gat~a~~~i~~~l~~~~~~~g~~--vl~~~~e~ps~~~~~~~l~~~ 93 (110)
.+..++|+++|+++ +++++ +|++|+|+++++.++++++. ++||+ |+++...|+.+.. ..+..
T Consensus 64 ~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~~al~~~~~~l~----~~gd~~~vlv~~P~y~~~~~---~~~~~ 136 (393)
T TIGR03538 64 KGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFAFAQAVI----NPGQAPLVVMPNPFYQIYEG---AALLA 136 (393)
T ss_pred CCCHHHHHHHHHHHHHhhCCcccCCCCceEEECCCcHHHHHHHHHHHc----CCCCcceEEecCCCCcchHH---HHHhc
Confidence 35678999999998 36775 79999999999999999887 78886 8876655655543 33567
Q ss_pred CcEEEEecCCCC
Q psy17798 94 GFNVLGSNPGQG 105 (110)
Q Consensus 94 g~~v~~v~~~~~ 105 (110)
|++++.+|++++
T Consensus 137 g~~~~~v~~~~~ 148 (393)
T TIGR03538 137 GAEPYFLNCTAE 148 (393)
T ss_pred CCeEEEeecccc
Confidence 999999999754
No 112
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=98.80 E-value=2.7e-08 Score=73.16 Aligned_cols=72 Identities=15% Similarity=0.190 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHh------CCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798 25 KAVEDARQEIATLI------NCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL 98 (110)
Q Consensus 25 ~~~~~~R~~la~~l------~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~ 98 (110)
.+..++|+++|+++ ++++++|++|+|+++++.++++++. ++||.|++....|+.+.... +..|++++
T Consensus 74 ~G~~~lr~aia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~~l~----~~gd~v~v~~P~y~~~~~~~---~~~g~~~~ 146 (409)
T PLN00143 74 GGILPARRAIADYLSNDLPYQLSPDDVYLTLGCKHAAEIIIKVLA----RPEANILLPRPGFPDVETYA---IFHHLEIR 146 (409)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCHhhEEEecChHHHHHHHHHHHc----CCCCEEEEcCCCCcCHHHHH---HHcCCEEE
Confidence 35678999999998 3688999999999999999999987 89999998887777765443 45799999
Q ss_pred EecCC
Q psy17798 99 GSNPG 103 (110)
Q Consensus 99 ~v~~~ 103 (110)
.++++
T Consensus 147 ~~~~~ 151 (409)
T PLN00143 147 HFDLL 151 (409)
T ss_pred EEecc
Confidence 99985
No 113
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=98.80 E-value=3.1e-08 Score=71.40 Aligned_cols=70 Identities=19% Similarity=0.191 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798 26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ 104 (110)
Q Consensus 26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~ 104 (110)
...++|+++|+++++++++|++|+|+++++.++++++ .+|+.|+ .. |++......++..|++++.+|+++
T Consensus 56 ~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~l-----~~g~viv-~~---P~y~~~~~~~~~~g~~~~~v~~~~ 125 (356)
T PRK08056 56 EYRHLHQALARHHQVPASWILAGNGETESIFAVVSGL-----KPRRAMI-VT---PGFAEYRRALQQVGCEIRRYSLRE 125 (356)
T ss_pred cHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHHh-----CCCCEEE-eC---CCcHHHHHHHHHcCCeEEEEeccc
Confidence 3689999999999999999999999999999998875 3566544 33 444333334466899999999874
No 114
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=98.79 E-value=2.6e-08 Score=71.87 Aligned_cols=71 Identities=21% Similarity=0.143 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCC
Q psy17798 26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQG 105 (110)
Q Consensus 26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~ 105 (110)
...++|+++|+++++++++|++|+|++++++++++++. + +.|++....|+.+ ...++..|++++.+|++++
T Consensus 55 ~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~~~-----~-~~v~i~~P~y~~~---~~~~~~~g~~~~~~~~~~~ 125 (354)
T PRK06358 55 DYLELRKRIASFEQLDLENVILGNGATELIFNIVKVTK-----P-KKVLILAPTFAEY---ERALKAFDAEIEYAELTEE 125 (354)
T ss_pred cHHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHHhC-----C-CcEEEecCChHHH---HHHHHHcCCeeEEEeCccc
Confidence 36799999999999999999999999999999988753 3 4677655555544 3444667999999998754
No 115
>PLN02231 alanine transaminase
Probab=98.79 E-value=1.9e-08 Score=76.42 Aligned_cols=79 Identities=18% Similarity=0.270 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHh----C--CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCC
Q psy17798 21 WESEKAVEDARQEIATLI----N--CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEG 94 (110)
Q Consensus 21 ~~~~~~~~~~R~~la~~l----~--~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g 94 (110)
+....++.++|+.||+++ | +++++|++|+|+++|+.++++++.. .+||.|++....||.+...+ +..|
T Consensus 164 Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l~~---~~gd~Vli~~P~Y~~y~~~~---~~~g 237 (534)
T PLN02231 164 YSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR---SEKDGILCPIPQYPLYSASI---ALHG 237 (534)
T ss_pred cCCCCCcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHhcc---CCCCEEEEeCCCChhHHHHH---HHcC
Confidence 445678999999999988 3 5789999999999999999998861 37999998777777665544 5579
Q ss_pred cEEEEecCCCC
Q psy17798 95 FNVLGSNPGQG 105 (110)
Q Consensus 95 ~~v~~v~~~~~ 105 (110)
.+++.+|++++
T Consensus 238 ~~~v~~~l~~~ 248 (534)
T PLN02231 238 GTLVPYYLDEA 248 (534)
T ss_pred CEEEEEecCcc
Confidence 99999999864
No 116
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=98.79 E-value=3.1e-08 Score=70.84 Aligned_cols=72 Identities=8% Similarity=-0.016 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCC
Q psy17798 26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQG 105 (110)
Q Consensus 26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~ 105 (110)
...++|+++|++++.++++|++|+|+++++.+++. +. .+|+ |++.+ |++......++..|++++.+|+++.
T Consensus 41 ~~~~lr~~ia~~~~~~~~~I~it~Gs~~~l~~~~~-~~----~~~~-vv~~~---P~y~~y~~~~~~~G~~v~~vp~~~~ 111 (332)
T PRK06425 41 SYTDIEDQIKIYTQGLKIKVLIGPGLTHFIYRLLS-YI----NVGN-IIIVE---PNFNEYKGYAFTHGIRISALPFNLI 111 (332)
T ss_pred CHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHH-Hh----CCCc-EEEeC---CChHHHHHHHHHcCCeEEEEeCCcc
Confidence 46899999999999999999999999999999986 33 5665 55444 5655555555778999999999754
Q ss_pred c
Q psy17798 106 G 106 (110)
Q Consensus 106 G 106 (110)
+
T Consensus 112 ~ 112 (332)
T PRK06425 112 N 112 (332)
T ss_pred c
Confidence 3
No 117
>PRK07682 hypothetical protein; Validated
Probab=98.78 E-value=5.2e-08 Score=70.64 Aligned_cols=73 Identities=22% Similarity=0.288 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHhC------CCCC-cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEE
Q psy17798 25 KAVEDARQEIATLIN------CDPK-EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97 (110)
Q Consensus 25 ~~~~~~R~~la~~l~------~~~~-~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v 97 (110)
....++|+++|++++ ++++ +|++|+|+++|+.++++++. ++||+|++....|+.+.... +..|.++
T Consensus 57 ~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~----~~gd~vl~~~p~y~~~~~~~---~~~g~~~ 129 (378)
T PRK07682 57 AGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAMRAII----NPGDEVLIVEPSFVSYAPLV---TLAGGVP 129 (378)
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhC----CCCCEEEEeCCCchhhHHHH---HHcCCEE
Confidence 457789999999884 4565 79999999999999999886 89999999888887655433 4468888
Q ss_pred EEecCCC
Q psy17798 98 LGSNPGQ 104 (110)
Q Consensus 98 ~~v~~~~ 104 (110)
+.++++.
T Consensus 130 ~~~~~~~ 136 (378)
T PRK07682 130 VPVATTL 136 (378)
T ss_pred EEeecCC
Confidence 8888763
No 118
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=98.78 E-value=8.6e-08 Score=68.44 Aligned_cols=76 Identities=13% Similarity=0.086 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798 25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ 104 (110)
Q Consensus 25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~ 104 (110)
....++++.++++++. +++++++|+|+|++.++.++.. ++||+|+++..+|+++..++. ..|++++++++++
T Consensus 18 ~~~~~~~~~la~~~~~--~~~~~~~sgt~al~~~l~~l~~---~~gd~vl~~~~~~~~~~~~~~---~~g~~~~~~~~~~ 89 (352)
T cd00616 18 PKVREFEKAFAEYLGV--KYAVAVSSGTAALHLALRALGI---GPGDEVIVPSFTFVATANAIL---LLGATPVFVDIDP 89 (352)
T ss_pred HHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHHcCC---CCCCEEEeCCcchHHHHHHHH---HcCCeEEEEecCC
Confidence 3677899999999996 4789999999999999998842 789999999999999877664 4699999999986
Q ss_pred -Cccc
Q psy17798 105 -GGNF 108 (110)
Q Consensus 105 -~G~~ 108 (110)
++.+
T Consensus 90 ~~~~~ 94 (352)
T cd00616 90 DTYNI 94 (352)
T ss_pred CcCCc
Confidence 4543
No 119
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=98.78 E-value=9.7e-08 Score=68.88 Aligned_cols=81 Identities=11% Similarity=0.097 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHhCCCC--CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEec
Q psy17798 24 EKAVEDARQEIATLINCDP--KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSN 101 (110)
Q Consensus 24 ~~~~~~~R~~la~~l~~~~--~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~ 101 (110)
.+.++++|+.+++++|+++ +.|++|+|+|++++.++.++. .+|++|++....+.+.. .....+..|++++.+|
T Consensus 36 ~~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l~----~~~~~vlv~~~~~~~~~-~~~~~~~~g~~~~~i~ 110 (368)
T PRK13479 36 NALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSLV----PRDGKVLVPDNGAYGAR-IAQIAEYLGIAHVVLD 110 (368)
T ss_pred HHHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhcc----CCCCeEEEEeCCchHHH-HHHHHHHcCCcEEEEE
Confidence 3589999999999999964 568899999999999999987 67777776543332221 1233467899999999
Q ss_pred CCCCcccc
Q psy17798 102 PGQGGNFL 109 (110)
Q Consensus 102 ~~~~G~~~ 109 (110)
+++++.+|
T Consensus 111 ~~~~~~~d 118 (368)
T PRK13479 111 TGEDEPPD 118 (368)
T ss_pred CCCCCCCC
Confidence 98665443
No 120
>PRK05839 hypothetical protein; Provisional
Probab=98.77 E-value=5.5e-08 Score=70.66 Aligned_cols=76 Identities=13% Similarity=-0.026 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHh----C--CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798 25 KAVEDARQEIATLI----N--CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL 98 (110)
Q Consensus 25 ~~~~~~R~~la~~l----~--~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~ 98 (110)
.+..++|+++|+++ + +++++|++|+|+++++..++..+.. -++||.|++....|+.+... ++..|++++
T Consensus 60 ~G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~~~~--~~~gd~vlv~~P~y~~~~~~---~~~~g~~v~ 134 (374)
T PRK05839 60 AGEESLREAQRGFFKRRFKIELKENELIPTFGTREVLFNFPQFVLF--DKQNPTIAYPNPFYQIYEGA---AIASRAKVL 134 (374)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHHhc--CCCCCEEEECCCCchhhHHH---HHhcCCEEE
Confidence 35678889988776 4 5899999999999999998887641 14789999765555555444 456799999
Q ss_pred EecCCCC
Q psy17798 99 GSNPGQG 105 (110)
Q Consensus 99 ~v~~~~~ 105 (110)
.+|++++
T Consensus 135 ~v~~~~~ 141 (374)
T PRK05839 135 LMPLTKE 141 (374)
T ss_pred Eeecccc
Confidence 9999854
No 121
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=98.77 E-value=8.6e-08 Score=77.11 Aligned_cols=81 Identities=15% Similarity=0.167 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhcc--CCCEEEEcCCCChhHHHHHHHH-HhCCcEE
Q psy17798 21 WESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKE--KKKHVITTQTEHKCVLDSCRIL-EGEGFNV 97 (110)
Q Consensus 21 ~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~--~g~~vl~~~~e~ps~~~~~~~l-~~~g~~v 97 (110)
....+.+.+.+..+|+++|++++++.++.|+|.+.+.++.++.+ + ++++|++++.+||++..+|+.+ +..|++|
T Consensus 144 QG~lqal~~~Qt~ia~LtG~~~anaSL~d~aTAaaea~~~a~~~---~~g~~~~VlVs~~~hP~~~~v~~t~a~~~GieV 220 (993)
T PLN02414 144 QGRLESLLNYQTMITDLTGLPMSNASLLDEGTAAAEAMAMCNNI---LKGKKKKFLIASNCHPQTIDVCQTRADGLGLEV 220 (993)
T ss_pred HHHHHHHHHHHHHHHHHhCCChhhEeecCChHHHHHHHHHHHhc---ccCCCCEEEEcCccCHhHHHHHHHhhhhcCCEE
Confidence 34557799999999999999999999999999999999888763 4 4478999999999999999887 6789999
Q ss_pred EEecCCC
Q psy17798 98 LGSNPGQ 104 (110)
Q Consensus 98 ~~v~~~~ 104 (110)
+.+|++.
T Consensus 221 ~~v~~~~ 227 (993)
T PLN02414 221 VVADEKD 227 (993)
T ss_pred EEecchh
Confidence 9999864
No 122
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=98.76 E-value=1.2e-07 Score=69.21 Aligned_cols=73 Identities=10% Similarity=0.031 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCC
Q psy17798 26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQG 105 (110)
Q Consensus 26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~ 105 (110)
..+++.+.+++++++ +++++|+|+|+|+++++.++. +++||+|+++...|+++..++. ..|++++.++++++
T Consensus 32 ~~~~~e~~la~~~g~--~~~v~~~sgt~aL~~~l~al~---~~pGd~Viv~~~t~~~~~~~~~---~~G~~~v~vd~d~~ 103 (376)
T TIGR02379 32 FSRRCETWLENRTGT--KKALLTPSCTAALEMAALLLD---IQPGDEVIMPSYTFVSTANAFV---LRGAKIVFVDIRPD 103 (376)
T ss_pred HHHHHHHHHHHHhCC--CeEEEeCCHHHHHHHHHHHcC---CCCcCEEEECCCCcHHHHHHHH---HcCCEEEEEecCCC
Confidence 345666677777665 689999999999999998873 2899999999999999877664 46999999999976
Q ss_pred c
Q psy17798 106 G 106 (110)
Q Consensus 106 G 106 (110)
+
T Consensus 104 ~ 104 (376)
T TIGR02379 104 T 104 (376)
T ss_pred c
Confidence 5
No 123
>PRK03080 phosphoserine aminotransferase; Provisional
Probab=98.75 E-value=9.2e-08 Score=69.74 Aligned_cols=80 Identities=6% Similarity=-0.024 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHhCCC-CCcEEEeC-ChHHHHHHHHHHhHHhhccC-CCEEEEcCCCChhHHHHHHHH-HhCCc-E
Q psy17798 22 ESEKAVEDARQEIATLINCD-PKEIIFTS-GATESNNIAVKGVARFYKEK-KKHVITTQTEHKCVLDSCRIL-EGEGF-N 96 (110)
Q Consensus 22 ~~~~~~~~~R~~la~~l~~~-~~~i~~t~-gat~a~~~i~~~l~~~~~~~-g~~vl~~~~e~ps~~~~~~~l-~~~g~-~ 96 (110)
...+.++++|+.++++++++ +++|+|++ |+|++++.++.++. ++ ++.|+. ..||++.... .+ ++.|+ +
T Consensus 45 ~f~~~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~~~~~~l~----~~~~~~vi~-~g~f~~~~~~--~~~~~~g~~~ 117 (378)
T PRK03080 45 PVKALLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEMALWSLL----GARRVDHLA-WESFGSKWAT--DVVKQLKLED 117 (378)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCceEEEECCchHHHHHHHHHhcC----CCCcceEEE-eCHHHHHHHH--HHHhhcCCCC
Confidence 56789999999999999984 56899885 99999999999985 54 455554 6899985432 23 45788 9
Q ss_pred EEEecCCCCccc
Q psy17798 97 VLGSNPGQGGNF 108 (110)
Q Consensus 97 v~~v~~~~~G~~ 108 (110)
++.++.+.++.+
T Consensus 118 v~~~~~~~g~~~ 129 (378)
T PRK03080 118 PRVLEADYGSLP 129 (378)
T ss_pred ceEeccCCCCCC
Confidence 999988754443
No 124
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=98.75 E-value=6.1e-08 Score=69.92 Aligned_cols=70 Identities=11% Similarity=0.095 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHh-------CCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798 26 AVEDARQEIATLI-------NCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL 98 (110)
Q Consensus 26 ~~~~~R~~la~~l-------~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~ 98 (110)
+..++|+++++++ ++++++|++|+|+++++..++..+. .++||+|++.+..||++.... +..|++++
T Consensus 57 G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~---~~~gd~Vl~~~p~y~~~~~~~---~~~g~~~~ 130 (357)
T TIGR03539 57 GTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVAWLPTLLG---LGPGDTVVIPELAYPTYEVGA---LLAGATPV 130 (357)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHHHHHHHHHHc---CCCCCEEEECCCCcHHHHHHH---HhcCCEEe
Confidence 4678899999988 4778999999999999999888773 179999999988888876554 34687777
Q ss_pred Eec
Q psy17798 99 GSN 101 (110)
Q Consensus 99 ~v~ 101 (110)
.++
T Consensus 131 ~v~ 133 (357)
T TIGR03539 131 AAD 133 (357)
T ss_pred ccC
Confidence 664
No 125
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=98.75 E-value=4.5e-08 Score=69.20 Aligned_cols=78 Identities=21% Similarity=0.342 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHhCCC------CCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEE
Q psy17798 24 EKAVEDARQEIATLINCD------PKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97 (110)
Q Consensus 24 ~~~~~~~R~~la~~l~~~------~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v 97 (110)
...+.++|+.++++++.. ++++++++|+++++..++.++. ++|++|+++...|+++...++ ..|+++
T Consensus 35 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~----~~g~~vl~~~~~~~~~~~~~~---~~~~~~ 107 (350)
T cd00609 35 DPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALL----NPGDEVLVPDPTYPGYEAAAR---LAGAEV 107 (350)
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhC----CCCCEEEEcCCCchhHHHHHH---HCCCEE
Confidence 346778888999888754 7899999999999999999987 789999999999999877654 468999
Q ss_pred EEecCCCCccc
Q psy17798 98 LGSNPGQGGNF 108 (110)
Q Consensus 98 ~~v~~~~~G~~ 108 (110)
+.+|.++++..
T Consensus 108 ~~i~~~~~~~~ 118 (350)
T cd00609 108 VPVPLDEEGGF 118 (350)
T ss_pred EEEecccccCC
Confidence 99999877654
No 126
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=98.74 E-value=3.1e-08 Score=72.65 Aligned_cols=74 Identities=15% Similarity=0.120 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHh------CCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcE-
Q psy17798 24 EKAVEDARQEIATLI------NCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFN- 96 (110)
Q Consensus 24 ~~~~~~~R~~la~~l------~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~- 96 (110)
..+..++|+++|+++ +++|++|++|+|+++++.+++ .+. .+||+|++.+..|+.+.... +..|.+
T Consensus 75 ~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~l~-~~~----~~gd~V~v~~P~Y~~~~~~~---~~~g~~~ 146 (409)
T PRK07590 75 EQGYDFLREKIAENDYQARGCDISADEIFISDGAKCDTGNIL-DIF----GPDNTIAVTDPVYPVYVDTN---VMAGRTG 146 (409)
T ss_pred CCCCHHHHHHHHHHHHHhcCCcCChhhEEECCCHHHHHHHHH-Hhc----CCCCEEEEeCCCCcchHHHH---HHcCCcc
Confidence 346778999999986 578999999999999999864 333 79999998776666655444 445765
Q ss_pred ----------EEEecCCCC
Q psy17798 97 ----------VLGSNPGQG 105 (110)
Q Consensus 97 ----------v~~v~~~~~ 105 (110)
++.+|++++
T Consensus 147 ~~~~~~~~~~~~~v~~~~~ 165 (409)
T PRK07590 147 EANEDGRYSGIVYLPCTAE 165 (409)
T ss_pred cccccccccceeEeecccc
Confidence 899999754
No 127
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=98.74 E-value=5.9e-08 Score=70.83 Aligned_cols=74 Identities=18% Similarity=0.216 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhC------CC-CCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798 26 AVEDARQEIATLIN------CD-PKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL 98 (110)
Q Consensus 26 ~~~~~R~~la~~l~------~~-~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~ 98 (110)
+.+++|++++++++ ++ +++|++|+|+++++++++.++. .+||+|++....|+.+...+ +..|++++
T Consensus 68 g~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~----~~gd~vl~~~p~y~~~~~~~---~~~g~~~~ 140 (391)
T PRK07309 68 GLLELRQAAADFVKEKYNLDYAPENEILVTIGATEALSASLTAIL----EPGDKVLLPAPAYPGYEPIV---NLVGAEIV 140 (391)
T ss_pred CcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhc----CCCCEEEEeCCCCcchHHHH---HHcCCEEE
Confidence 46789999999874 23 4789999999999999999876 79999998877777765433 55799999
Q ss_pred EecCCCCc
Q psy17798 99 GSNPGQGG 106 (110)
Q Consensus 99 ~v~~~~~G 106 (110)
.+|+++++
T Consensus 141 ~~~~~~~~ 148 (391)
T PRK07309 141 EIDTTEND 148 (391)
T ss_pred EEecCCcC
Confidence 99987654
No 128
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=98.74 E-value=5.9e-08 Score=70.49 Aligned_cols=77 Identities=14% Similarity=0.315 Sum_probs=59.0
Q ss_pred hhhh-hcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChh
Q psy17798 4 YLTN-AYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKC 82 (110)
Q Consensus 4 ~~~~-~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps 82 (110)
.++. ..+++++ .+..|. .+...++|+.+|++++++ ++++++|+++|++.++.++. ++||+|++++.+||+
T Consensus 64 ~~~~~~~~~~~s-~~~~G~--~~~~~~le~~ia~~~g~~--~~ii~~~~~~a~~~~~~~l~----~~gd~vi~~~~~~~s 134 (393)
T TIGR01822 64 ALDEHGFGMSSV-RFICGT--QDIHKELEAKIAAFLGTE--DTILYASCFDANGGLFETLL----GAEDAIISDALNHAS 134 (393)
T ss_pred HHHHhCCCCCCc-CcccCC--hHHHHHHHHHHHHHhCCC--cEEEECchHHHHHHHHHHhC----CCCCEEEEeccccHH
Confidence 3444 2466665 344443 456789999999999973 56777888999999988875 899999999999999
Q ss_pred HHHHHHH
Q psy17798 83 VLDSCRI 89 (110)
Q Consensus 83 ~~~~~~~ 89 (110)
+...+..
T Consensus 135 ~~~~~~~ 141 (393)
T TIGR01822 135 IIDGVRL 141 (393)
T ss_pred HHHHHHh
Confidence 8876643
No 129
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=98.74 E-value=8.8e-08 Score=69.92 Aligned_cols=73 Identities=15% Similarity=0.123 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHh----C---CCCC-cEEEeCChHHHHHHHHHHhHHhhccC---CCEEEEcCCCChhHHHHHHHHHhCC
Q psy17798 26 AVEDARQEIATLI----N---CDPK-EIIFTSGATESNNIAVKGVARFYKEK---KKHVITTQTEHKCVLDSCRILEGEG 94 (110)
Q Consensus 26 ~~~~~R~~la~~l----~---~~~~-~i~~t~gat~a~~~i~~~l~~~~~~~---g~~vl~~~~e~ps~~~~~~~l~~~g 94 (110)
+..++|+++|+++ + ++++ +|++|+|+++++.++++++. ++ ||.|+++...|+.+... ++..|
T Consensus 66 G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~----~~~~~gd~vlv~~P~y~~~~~~---~~~~g 138 (396)
T PRK09147 66 GLPALREAIAAWLERRYGLPALDPATQVLPVNGSREALFAFAQTVI----DRDGPGPLVVCPNPFYQIYEGA---ALLAG 138 (396)
T ss_pred CCHHHHHHHHHHHHHHhCCCcCCccceEEECCChHHHHHHHHHHHc----CCCCCCCEEEEcCCCccchHHH---HHhcC
Confidence 4678999999976 5 5665 89999999999999999887 77 88999866655554443 35579
Q ss_pred cEEEEecCCCC
Q psy17798 95 FNVLGSNPGQG 105 (110)
Q Consensus 95 ~~v~~v~~~~~ 105 (110)
++++.||++++
T Consensus 139 ~~~~~vp~~~~ 149 (396)
T PRK09147 139 AEPYFLNCDPA 149 (396)
T ss_pred CEEEEeccCcc
Confidence 99999999854
No 130
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=98.73 E-value=8.6e-08 Score=70.28 Aligned_cols=77 Identities=10% Similarity=0.091 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHH-HHhCCcEEEE
Q psy17798 21 WESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRI-LEGEGFNVLG 99 (110)
Q Consensus 21 ~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~-l~~~g~~v~~ 99 (110)
+...+..+++++.+|+++|++ ++++|+|+++|+..++.++. ++||+||++...|++....+.. ++..|+++++
T Consensus 57 r~~~p~~~~le~~la~l~g~~--~~v~~ssG~~Ai~~al~al~----~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~ 130 (390)
T PRK08133 57 RFTNPTVTMFQERLAALEGAE--ACVATASGMAAILAVVMALL----QAGDHVVSSRSLFGSTVSLFEKIFARFGIETTF 130 (390)
T ss_pred CCCChHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh----CCCCEEEEccCcchhHHHHHHHHHHHcCcEEEE
Confidence 334567889999999999974 68899999999999998876 8999999999999988877654 4678999999
Q ss_pred ecCC
Q psy17798 100 SNPG 103 (110)
Q Consensus 100 v~~~ 103 (110)
++++
T Consensus 131 vd~~ 134 (390)
T PRK08133 131 VDLT 134 (390)
T ss_pred ECCC
Confidence 9875
No 131
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=98.73 E-value=1.7e-07 Score=66.92 Aligned_cols=81 Identities=11% Similarity=0.079 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHhCCCCC--cEEEeCChHHHHHHHHHHhHHhhccCCCEE-EEcCCCChhHHHHHHHHHhCCcEEEE
Q psy17798 23 SEKAVEDARQEIATLINCDPK--EIIFTSGATESNNIAVKGVARFYKEKKKHV-ITTQTEHKCVLDSCRILEGEGFNVLG 99 (110)
Q Consensus 23 ~~~~~~~~R~~la~~l~~~~~--~i~~t~gat~a~~~i~~~l~~~~~~~g~~v-l~~~~e~ps~~~~~~~l~~~g~~v~~ 99 (110)
..+.++++|+.+++++|++++ +|++++|+|+++..++.++. .+++++ ++++.+|++.. ....+..|++++.
T Consensus 29 ~~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~----~~~~~vi~~~~~~~~~~~--~~~a~~~g~~~~~ 102 (355)
T TIGR03301 29 FNDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLV----PRDGKLLVLINGAYGERL--AKICEYLGIPHTD 102 (355)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhcc----CCCCeEEEECCCchhhHH--HHHHHHcCCceEE
Confidence 347899999999999999765 68899999999999999987 566664 45555555422 1222567999999
Q ss_pred ecCCCCcccc
Q psy17798 100 SNPGQGGNFL 109 (110)
Q Consensus 100 v~~~~~G~~~ 109 (110)
+++++++.+|
T Consensus 103 i~~~~~~~~d 112 (355)
T TIGR03301 103 LNFSEYEPPD 112 (355)
T ss_pred EecCCCCCCC
Confidence 9987655443
No 132
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=98.72 E-value=4.8e-08 Score=69.40 Aligned_cols=74 Identities=16% Similarity=0.165 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798 25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ 104 (110)
Q Consensus 25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~ 104 (110)
....++++.++++++ ++++++++|+++++..++.++. ++||+|+++...|+++...+...+..|++++.+|.+.
T Consensus 32 ~~~~~l~~~~a~~~g--~~~~~~~~~gt~a~~~~~~~l~----~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 105 (338)
T cd06502 32 PTTAKLEARAAELFG--KEAALFVPSGTAANQLALAAHT----QPGGSVICHETAHIYTDEAGAPEFLSGVKLLPVPGEN 105 (338)
T ss_pred HHHHHHHHHHHHHhC--CCeEEEecCchHHHHHHHHHhc----CCCCeEEEecCcceeeecCCcHHHHcCceEEeecCCC
Confidence 457889999999999 6789999999999999998876 7999999999999876543222233699999998864
No 133
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=98.72 E-value=1.7e-08 Score=73.74 Aligned_cols=77 Identities=16% Similarity=0.160 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHhC------CCCCcE--EEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHh
Q psy17798 21 WESEKAVEDARQEIATLIN------CDPKEI--IFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEG 92 (110)
Q Consensus 21 ~~~~~~~~~~R~~la~~l~------~~~~~i--~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~ 92 (110)
+....+..++|+++++++. +++++| ++|+|+++|+.++++.+.. .++||+|++.+.-||.+.. .++.
T Consensus 65 Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~--~~pGd~Vlv~~P~y~~~~~---~~~~ 139 (396)
T PRK09257 65 YLPIEGLAAYRQAVQELLFGADSPALAAGRVATVQTPGGTGALRVGADFLKR--AFPDAKVWVSDPTWPNHRA---IFEA 139 (396)
T ss_pred cCCCCCCHHHHHHHHHHhcCCCCcccccCeEEEEecCCccHHHHHHHHHHHH--hCCCCeEEECCCCcccHHH---HHHH
Confidence 3345678899999999873 368887 9999999999999887641 2699999986666665554 4456
Q ss_pred CCcEEEEecC
Q psy17798 93 EGFNVLGSNP 102 (110)
Q Consensus 93 ~g~~v~~v~~ 102 (110)
.|++++.+|+
T Consensus 140 ~g~~~v~v~~ 149 (396)
T PRK09257 140 AGLEVKTYPY 149 (396)
T ss_pred cCCcEEEEec
Confidence 7999999997
No 134
>PRK12414 putative aminotransferase; Provisional
Probab=98.72 E-value=1.1e-07 Score=69.33 Aligned_cols=74 Identities=15% Similarity=0.190 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHH----hCC--CC-CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798 26 AVEDARQEIATL----INC--DP-KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL 98 (110)
Q Consensus 26 ~~~~~R~~la~~----l~~--~~-~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~ 98 (110)
+..++|+.++++ +|+ ++ ++|++|+|+++++.++++++. .+||+|+++...|+.+...+ +..|++++
T Consensus 67 G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~~~~~l~----~~gd~Vlv~~p~y~~~~~~~---~~~g~~~~ 139 (384)
T PRK12414 67 GIAALREALAEKTERLYGARYDPASEVTVIASASEGLYAAISALV----HPGDEVIYFEPSFDSYAPIV---RLQGATPV 139 (384)
T ss_pred CcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHHHHHHhc----CCCCEEEEeCCCccchHHHH---HHcCCEEE
Confidence 455666666655 466 34 689999999999999999886 89999999888887755443 44699999
Q ss_pred EecCCCCc
Q psy17798 99 GSNPGQGG 106 (110)
Q Consensus 99 ~v~~~~~G 106 (110)
.+|+++++
T Consensus 140 ~v~~~~~~ 147 (384)
T PRK12414 140 AIKLSPED 147 (384)
T ss_pred EEecCccc
Confidence 99998543
No 135
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=98.71 E-value=1.8e-07 Score=65.96 Aligned_cols=72 Identities=15% Similarity=0.260 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798 25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ 104 (110)
Q Consensus 25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~ 104 (110)
..+.++++.+|+++|++ +-+++|+|+|+++..++.++. ++||+|+++...|+++..++. ..|+++++++++.
T Consensus 59 g~i~~~~~~~A~~~ga~-~~~~~~~Gst~a~~~~l~al~----~~gd~Vlv~~~~h~s~~~~~~---~~g~~~~~v~~~~ 130 (294)
T cd00615 59 GPIKEAQELAARAFGAK-HTFFLVNGTSSSNKAVILAVC----GPGDKILIDRNCHKSVINGLV---LSGAVPVYLKPER 130 (294)
T ss_pred hHHHHHHHHHHHHhCCC-CEEEEcCcHHHHHHHHHHHcC----CCCCEEEEeCCchHHHHHHHH---HCCCEEEEecCcc
Confidence 46889999999999975 345559999999999999886 899999999999999887764 3689999987763
No 136
>PRK06460 hypothetical protein; Provisional
Probab=98.71 E-value=5.2e-08 Score=71.13 Aligned_cols=93 Identities=23% Similarity=0.305 Sum_probs=69.0
Q ss_pred hcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHH
Q psy17798 8 AYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSC 87 (110)
Q Consensus 8 ~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~ 87 (110)
.+..++.+.|..++......+++|+.+|++.++++ .++|++| ++|+..++.++. ++||+|+++...++.....+
T Consensus 28 ~~~~~~~~~~~y~r~~~p~~~~L~~~lA~l~g~~~-~v~~~sG-~~ai~~~l~al~----~~Gd~Vl~~~~~~~~ty~~~ 101 (376)
T PRK06460 28 AYHYPEGEKYRYSREANPTVLELTKKIVELENAEM-GVAFSSG-MGAISTTALALL----KPGNSVLVHRDMFGRSYRFF 101 (376)
T ss_pred ceeeCCCCCcceeCCCCccHHHHHHHHHHHhCCCc-EEEeCCH-HHHHHHHHHHHh----CCCCEEEEecCCcCcHHHHH
Confidence 34444433567777788899999999999999854 5777555 689999988876 89999999876665444444
Q ss_pred -HHHHhCCcEEEEecCCCCc
Q psy17798 88 -RILEGEGFNVLGSNPGQGG 106 (110)
Q Consensus 88 -~~l~~~g~~v~~v~~~~~G 106 (110)
..++..|++++.++.++++
T Consensus 102 ~~~~~~~G~~v~~~~~~~~~ 121 (376)
T PRK06460 102 TDYLKNWGVNVDASNPGSDN 121 (376)
T ss_pred HHHHHhhCcEEEEECCCCHH
Confidence 3447789999999876543
No 137
>PRK06855 aminotransferase; Validated
Probab=98.70 E-value=3e-08 Score=73.42 Aligned_cols=74 Identities=18% Similarity=0.213 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHh----C--CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEE
Q psy17798 24 EKAVEDARQEIATLI----N--CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97 (110)
Q Consensus 24 ~~~~~~~R~~la~~l----~--~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v 97 (110)
..+..++|+++|+++ + +++++|++|+|+++++.+++. +. .+||.|++....||.+.... ....|+++
T Consensus 72 ~~G~~~LReaia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~-l~----~~Gd~Vlv~~P~Y~~~~~~~--~~~~g~~~ 144 (433)
T PRK06855 72 TKGVLETREFLAELNNKRGGAQITPDDIIFFNGLGDAIAKIYG-LL----RREARVIGPSPAYSTHSSAE--AAHAGYPP 144 (433)
T ss_pred CCCCHHHHHHHHHHHHhccCCCCCHhHEEEcCcHHHHHHHHHH-hc----CCCCeEEEeCCCCchHHHHH--HHhcCCeE
Confidence 346789999999998 3 578999999999999999874 54 79999998887777643221 12358888
Q ss_pred EEecCCC
Q psy17798 98 LGSNPGQ 104 (110)
Q Consensus 98 ~~v~~~~ 104 (110)
+.+|+++
T Consensus 145 v~v~~~~ 151 (433)
T PRK06855 145 VTYRLDP 151 (433)
T ss_pred EEEeccc
Confidence 9999875
No 138
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=98.70 E-value=2.2e-07 Score=67.56 Aligned_cols=71 Identities=15% Similarity=0.056 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798 26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ 104 (110)
Q Consensus 26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~ 104 (110)
...++|+.+|++++++ +.++++|+|+|+++++.++. +++||+|+++..+|+++..++ +..|++++++++++
T Consensus 30 ~~~~le~~la~~~g~~--~~v~~~sgt~al~~~l~al~---~~~Gd~Viv~~~~~~~~~~~~---~~~G~~~~~~~~~~ 100 (380)
T TIGR03588 30 TVPAFEEALAEYVGAK--YAVAFNSATSALHIACLALG---VGPGDRVWTTPITFVATANCA---LYCGAKVDFVDIDP 100 (380)
T ss_pred hHHHHHHHHHHHHCCC--eEEEEcCHHHHHHHHHHHcC---CCCCCEEEeCCcchHHHHHHH---HHcCCEEEEEecCC
Confidence 4678999999999984 45666788999999999984 279999999999998876554 45799999999975
No 139
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=98.69 E-value=1.1e-07 Score=68.69 Aligned_cols=71 Identities=13% Similarity=0.111 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHh-------CCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEE
Q psy17798 25 KAVEDARQEIATLI-------NCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97 (110)
Q Consensus 25 ~~~~~~R~~la~~l-------~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v 97 (110)
.+..++|+++|+++ ++++++|++|+|+++++.+++..+. .++||+|+++...||.+.... +..|+++
T Consensus 62 ~G~~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~---~~~gd~Vl~~~p~y~~~~~~~---~~~g~~~ 135 (364)
T PRK07865 62 AGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELVAWLPTLLG---LGPGDVVVIPELAYPTYEVGA---RLAGATV 135 (364)
T ss_pred cCCHHHHHHHHHHHHHHcCCCCCCcccEEEccChHHHHHHHHHHHc---CCCCCEEEECCCCcccHHHHH---HhcCCEE
Confidence 35678899999988 3678999999999999999887762 179999999888888776554 3468887
Q ss_pred EEec
Q psy17798 98 LGSN 101 (110)
Q Consensus 98 ~~v~ 101 (110)
+.++
T Consensus 136 ~~~~ 139 (364)
T PRK07865 136 VRAD 139 (364)
T ss_pred EecC
Confidence 7765
No 140
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=98.69 E-value=8.8e-08 Score=70.15 Aligned_cols=73 Identities=18% Similarity=0.078 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHh---CCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCc------
Q psy17798 25 KAVEDARQEIATLI---NCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGF------ 95 (110)
Q Consensus 25 ~~~~~~R~~la~~l---~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~------ 95 (110)
.+.+++|+++|+++ ++++|+|++|+|+++++.+++ .+. .+||+|++....|+.+...+ +..|+
T Consensus 75 ~g~~~lr~aia~~~~~~~~~~d~I~it~Ga~~al~~l~-~l~----~~gd~Vlv~~P~y~~~~~~~---~~~g~~~~~~~ 146 (402)
T TIGR03542 75 QGYPFLREAIAENDYRGRIDPEEIFISDGAKCDVFRLQ-SLF----GSDNTVAVQDPVYPAYVDSN---VMAGRAGVLDD 146 (402)
T ss_pred CCCHHHHHHHHHHHHhcCCCHHHEEECCCcHHHHHHHH-Hhc----CCCCEEEEeCCCCcchHHHH---HHcCCcccccc
Confidence 46789999999987 688999999999999999864 443 68999998776666655444 45688
Q ss_pred -----EEEEecCCCC
Q psy17798 96 -----NVLGSNPGQG 105 (110)
Q Consensus 96 -----~v~~v~~~~~ 105 (110)
+++.+|++++
T Consensus 147 ~~~~~~~~~v~~~~~ 161 (402)
T TIGR03542 147 DGRYSKITYLPCTKE 161 (402)
T ss_pred ccccceEEEeecchh
Confidence 9999998753
No 141
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=98.68 E-value=1.5e-07 Score=68.20 Aligned_cols=93 Identities=16% Similarity=0.093 Sum_probs=66.6
Q ss_pred hhhhhhcCCCCCcCChHHHHHH---HHHHHHHHHHHHHhCCC-CCcEEEeCC-hHHHHHHHHHHhHHhhccCCCEEEEcC
Q psy17798 3 PYLTNAYGNPHSRTHAYGWESE---KAVEDARQEIATLINCD-PKEIIFTSG-ATESNNIAVKGVARFYKEKKKHVITTQ 77 (110)
Q Consensus 3 ~~~~~~~~n~~~~~~~~~~~~~---~~~~~~R~~la~~l~~~-~~~i~~t~g-at~a~~~i~~~l~~~~~~~g~~vl~~~ 77 (110)
+|+.... |.++|.+..+.... +.++++|+.++++++++ ..+|+|++| +|+|++.++.++. .+++++++..
T Consensus 13 ~~~~~~~-~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl~----~~~~~~l~i~ 87 (349)
T TIGR01364 13 KELLNFN-GTGMSVMEISHRSKEFEAVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNLL----AEGKVADYIV 87 (349)
T ss_pred HHHhCcc-CCCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcC----CCCCeEEEEE
Confidence 4555444 88888776666555 88999999999999973 457988877 9999999999987 5777765432
Q ss_pred CCChhHHHHHHHH-HhCCcEEEEecCC
Q psy17798 78 TEHKCVLDSCRIL-EGEGFNVLGSNPG 103 (110)
Q Consensus 78 ~e~ps~~~~~~~l-~~~g~~v~~v~~~ 103 (110)
...+-.-|..+ ++.|+ +..++.+
T Consensus 88 --~G~fg~r~~~~a~~~g~-~~~~~~~ 111 (349)
T TIGR01364 88 --TGAWSKKAAKEAKKYGV-VNVVASG 111 (349)
T ss_pred --CCHHHHHHHHHHHHhCC-cEEEecc
Confidence 23333333444 67788 7777654
No 142
>PRK07050 cystathionine beta-lyase; Provisional
Probab=98.68 E-value=1.4e-07 Score=69.24 Aligned_cols=80 Identities=14% Similarity=0.147 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCcE
Q psy17798 18 AYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFN 96 (110)
Q Consensus 18 ~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~ 96 (110)
..++...+..+++++.+|++.|+ +++++++|+++|+++++.++. ++||+||++...|+++...+..+ +..|++
T Consensus 58 ~Y~r~~~pt~~~Le~~lA~l~g~--~~~l~~~sgt~Ai~~~l~al~----~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi~ 131 (394)
T PRK07050 58 RYGLHATPTSLALAQRLAEIEGG--RHALLQPSGLAAISLVYFGLV----KAGDDVLIPDNAYGPNRDHGEWLARDFGIT 131 (394)
T ss_pred ccCCCCCHHHHHHHHHHHHHhCC--CeEEEeccHHHHHHHHHHHHh----CCCCEEEEecCCcccHHHHHHHHHHhcCeE
Confidence 34444556778999999999985 589999999999999999986 89999999999999888766544 677999
Q ss_pred EEEecCC
Q psy17798 97 VLGSNPG 103 (110)
Q Consensus 97 v~~v~~~ 103 (110)
+++++.+
T Consensus 132 v~~vd~~ 138 (394)
T PRK07050 132 VRFYDPL 138 (394)
T ss_pred EEEECCC
Confidence 9988754
No 143
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=98.64 E-value=4.7e-07 Score=65.91 Aligned_cols=73 Identities=10% Similarity=0.062 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCC
Q psy17798 26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQG 105 (110)
Q Consensus 26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~ 105 (110)
..+++.+.+++++++ +++++|+|+++|+++++.++. +++||+|+++...|+++..++ +..|++++++++|++
T Consensus 32 ~~~~~e~~la~~~g~--~~~v~~~sgt~al~~~l~~~~---~~~Gd~Viv~~~t~~~~~~~~---~~~G~~~v~~d~d~~ 103 (375)
T PRK11706 32 FTRRCQQWLEQRFGS--AKVLLTPSCTAALEMAALLLD---IQPGDEVIMPSYTFVSTANAF---VLRGAKIVFVDIRPD 103 (375)
T ss_pred HHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHHhC---CCCCCEEEECCCCcHHHHHHH---HHcCCEEEEEecCCC
Confidence 345666777877776 589999999999999887664 279999999999999987665 446999999999877
Q ss_pred c
Q psy17798 106 G 106 (110)
Q Consensus 106 G 106 (110)
+
T Consensus 104 ~ 104 (375)
T PRK11706 104 T 104 (375)
T ss_pred c
Confidence 5
No 144
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=98.64 E-value=4.8e-07 Score=65.65 Aligned_cols=72 Identities=19% Similarity=0.254 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798 24 EKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG 103 (110)
Q Consensus 24 ~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~ 103 (110)
.+.+.++++.+|+++|++ ++++++|+++++..++.++. ++||+|+++..+|.+.... ++..|++++.+|.+
T Consensus 50 ~~~~~~~~e~lA~~~g~~--~~~i~~g~~~a~~~~~~~l~----~~gd~Vl~~~~~h~s~~~~---~~~~g~~~~~~~~~ 120 (370)
T TIGR02539 50 KPPIHDFLEDLAEFLGMD--EARVTHGAREGKFAVMHALC----KEGDWVVLDGLAHYTSYVA---AERAGLNVKEVPHT 120 (370)
T ss_pred chHHHHHHHHHHHHhCCC--ceEEECChHHHHHHHHHHhh----CCCCEEEECCcccHHHHHH---HHHcCCEEEEEecC
Confidence 346788999999999986 46678999999999999987 7999999988999887643 35679999999986
Q ss_pred C
Q psy17798 104 Q 104 (110)
Q Consensus 104 ~ 104 (110)
+
T Consensus 121 ~ 121 (370)
T TIGR02539 121 G 121 (370)
T ss_pred C
Confidence 3
No 145
>PRK07777 aminotransferase; Validated
Probab=98.63 E-value=3.8e-07 Score=66.38 Aligned_cols=74 Identities=23% Similarity=0.250 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHh----CC--CCC-cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEE
Q psy17798 25 KAVEDARQEIATLI----NC--DPK-EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97 (110)
Q Consensus 25 ~~~~~~R~~la~~l----~~--~~~-~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v 97 (110)
.+..++|+++++++ +. +++ +|++|+|+++|+..++.++. .+||+|++....|+++... ++..|+++
T Consensus 61 ~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~----~~gd~vli~~p~y~~~~~~---~~~~g~~~ 133 (387)
T PRK07777 61 PGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAAVLGLV----EPGDEVLLIEPYYDSYAAV---IAMAGAHR 133 (387)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhc----CCCCEEEEeCCCchhhHHH---HHHCCCEE
Confidence 34677888888764 44 465 79999999999999988876 7999999887777776533 34568999
Q ss_pred EEecCCCC
Q psy17798 98 LGSNPGQG 105 (110)
Q Consensus 98 ~~v~~~~~ 105 (110)
+.+|++++
T Consensus 134 ~~~~~~~~ 141 (387)
T PRK07777 134 VPVPLVPD 141 (387)
T ss_pred EEeecCCc
Confidence 99998865
No 146
>PRK05367 glycine dehydrogenase; Provisional
Probab=98.62 E-value=4.4e-07 Score=73.03 Aligned_cols=80 Identities=16% Similarity=0.145 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccC--CCEEEEcCCCChhHHHHHHHH-HhCCcEEE
Q psy17798 22 ESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEK--KKHVITTQTEHKCVLDSCRIL-EGEGFNVL 98 (110)
Q Consensus 22 ~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~--g~~vl~~~~e~ps~~~~~~~l-~~~g~~v~ 98 (110)
..-+.+.+.+..+++++|+++.++.+..++|.+...++.++.+ ++ +++|++++.+||++..+|+.+ +..|++|+
T Consensus 118 G~Leal~~~Qt~la~LtG~~~anaSl~d~aTAa~ea~~~a~~~---~~~~~~~vlv~~~~hP~~~~v~~t~a~~~G~ev~ 194 (954)
T PRK05367 118 GRLEALLNFQTMVADLTGLEIANASLLDEATAAAEAMALAKRV---SKSKSNRFFVDDDVHPQTLDVLRTRAEPLGIEVV 194 (954)
T ss_pred HHHHHHHHHHHHHHHHHCCChhhccccccHHHHHHHHHHhhhh---ccCCCCEEEEcCccCHHHHHHHHHHHHhCCCEEE
Confidence 3446788899999999999999999999999999999988763 44 489999999999999999887 67899999
Q ss_pred EecCCC
Q psy17798 99 GSNPGQ 104 (110)
Q Consensus 99 ~v~~~~ 104 (110)
.+|.+.
T Consensus 195 ~~~~~~ 200 (954)
T PRK05367 195 VGDAAK 200 (954)
T ss_pred EecCcc
Confidence 999865
No 147
>PRK09082 methionine aminotransferase; Validated
Probab=98.61 E-value=4.1e-07 Score=66.29 Aligned_cols=73 Identities=23% Similarity=0.181 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHH----hCC--CCC-cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798 26 AVEDARQEIATL----INC--DPK-EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL 98 (110)
Q Consensus 26 ~~~~~R~~la~~----l~~--~~~-~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~ 98 (110)
+..++|++++++ ++. +++ +|++|+|+++++.+++.++. .+||+|+++...|+++...+ +..|++++
T Consensus 68 G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~~~~~~~----~~gd~Vli~~p~y~~~~~~~---~~~g~~~~ 140 (386)
T PRK09082 68 GVAALREAIAAKTARLYGRQYDADSEITVTAGATEALFAAILALV----RPGDEVIVFDPSYDSYAPAI---ELAGGRAV 140 (386)
T ss_pred CcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHHHHHHHc----CCCCEEEEeCCCchhhHHHH---HHcCCEEE
Confidence 455677777765 454 344 79999999999999999886 79999999988888876555 34699999
Q ss_pred EecCCCC
Q psy17798 99 GSNPGQG 105 (110)
Q Consensus 99 ~v~~~~~ 105 (110)
.+|++.+
T Consensus 141 ~~~~~~~ 147 (386)
T PRK09082 141 RVALQPP 147 (386)
T ss_pred EEecCcc
Confidence 9999743
No 148
>PLN02994 1-aminocyclopropane-1-carboxylate synthase
Probab=98.60 E-value=8e-08 Score=62.24 Aligned_cols=53 Identities=21% Similarity=0.354 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHh----C----CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCCh
Q psy17798 25 KAVEDARQEIATLI----N----CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHK 81 (110)
Q Consensus 25 ~~~~~~R~~la~~l----~----~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~p 81 (110)
.+..++|+++|+++ + ++|++|++|+|+++++.++++++. ++||.|++...-||
T Consensus 92 ~G~~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l~----dpGD~VlVp~P~Y~ 152 (153)
T PLN02994 92 HGLANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIA----DPGDAFLVPTPYYA 152 (153)
T ss_pred CCcHHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHHc----CCCCEEEEeCCCCC
Confidence 36788999999988 3 468999999999999999999988 89999998766554
No 149
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=98.58 E-value=3.5e-07 Score=65.46 Aligned_cols=66 Identities=6% Similarity=0.015 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798 28 EDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ 104 (110)
Q Consensus 28 ~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~ 104 (110)
.++|+++|++++. ++|++|+|+++++.+++. . .+||+|++.+..|+.+. ..++..|++++.+|+++
T Consensus 52 ~~Lr~~ia~~~~~--~~I~it~Gs~~al~~~~~--~----~~gd~v~v~~P~y~~~~---~~~~~~g~~~~~v~~~~ 117 (330)
T PRK05664 52 DGLEAAARAYYGA--PQLLPVAGSQAAIQALPR--L----RAPGRVGVLSPCYAEHA---HAWRRAGHQVRELDEAE 117 (330)
T ss_pred HHHHHHHHHHhCC--CCEEECcCHHHHHHHHHH--c----cCCCEEEEcCCChHHHH---HHHHHcCCeEEEechhh
Confidence 7899999999984 799999999999998853 2 68999997555555444 44466799999998753
No 150
>PLN02721 threonine aldolase
Probab=98.58 E-value=2.7e-07 Score=65.90 Aligned_cols=78 Identities=17% Similarity=0.202 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhcc-CCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798 26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKE-KKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ 104 (110)
Q Consensus 26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~-~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~ 104 (110)
...++|+++|++++.+. +++++++++++..++.++. + +||+|++++..|.+........+..|++++.+|.++
T Consensus 41 ~~~~l~~~la~~~~~~~--~~~~~~Gs~a~~~~l~~~~----~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 114 (353)
T PLN02721 41 TALRLEEEMAKIFGKEA--ALFVPSGTMGNLISVLVHC----DVRGSEVILGDNSHIHLYENGGISTLGGVHPRTVKNNE 114 (353)
T ss_pred HHHHHHHHHHHHhCCce--eEEecCccHHHHHHHHHHc----cCCCCeEEEcCccceehhcccchhhhcCceeEecCCCc
Confidence 36899999999999753 5777777877766666654 5 899999988887654432112345799999999887
Q ss_pred Ccccc
Q psy17798 105 GGNFL 109 (110)
Q Consensus 105 ~G~~~ 109 (110)
+|.+|
T Consensus 115 ~~~~d 119 (353)
T PLN02721 115 DGTMD 119 (353)
T ss_pred CCCcC
Confidence 77554
No 151
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=98.57 E-value=7.8e-07 Score=64.71 Aligned_cols=71 Identities=15% Similarity=0.244 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhC-CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798 27 VEDARQEIATLIN-CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ 104 (110)
Q Consensus 27 ~~~~R~~la~~l~-~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~ 104 (110)
..++|+++|++.+ .++++|++++|++|.+.++++++. .+||.|+++...|+.+...+ +..|++++.+|.++
T Consensus 59 ~~~l~~a~a~~~~~~~~~~V~~gnGsde~i~~l~~~~~----~~gd~vl~~~Ptf~~Y~~~a---~~~g~~~~~v~~~~ 130 (356)
T COG0079 59 YRELRAALAEYYGVVDPENVLVGNGSDELIELLVRAFV----EPGDTVLIPEPTFSMYEIAA---QLAGAEVVKVPLKE 130 (356)
T ss_pred HHHHHHHHHHHhCCCCcceEEEcCChHHHHHHHHHHhh----cCCCEEEEcCCChHHHHHHH---HhcCCeEEEecccc
Confidence 5689999999999 788999999999999999999988 89999998877776665544 45799999999876
No 152
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.55 E-value=4e-07 Score=67.81 Aligned_cols=79 Identities=20% Similarity=0.212 Sum_probs=62.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHH-HHHHhCCc
Q psy17798 17 HAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSC-RILEGEGF 95 (110)
Q Consensus 17 ~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~-~~l~~~g~ 95 (110)
+..++...+..+.+++.+|++.|+ ++.|+|++|+ .|+.+++.++. ++||+||++..+|++....+ ..+++.|+
T Consensus 61 ~~Y~r~~~pt~~~le~~la~l~g~-~~~v~fsSG~-~Ai~~al~~ll----~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi 134 (437)
T PRK05613 61 PIYSRLTNPTVEALENRIASLEGG-VHAVAFASGQ-AAETAAILNLA----GAGDHIVTSPRLYGGTETLFLVTLNRLGI 134 (437)
T ss_pred ceeeCccChHHHHHHHHHHHHhCC-CeEEEeCCHH-HHHHHHHHHhc----CCCCEEEECCCccHHHHHHHHHHHHhcCe
Confidence 445555667889999999999998 3567777776 77777777765 89999999999999985544 44577899
Q ss_pred EEEEec
Q psy17798 96 NVLGSN 101 (110)
Q Consensus 96 ~v~~v~ 101 (110)
++++++
T Consensus 135 ~v~~vd 140 (437)
T PRK05613 135 EVTFVE 140 (437)
T ss_pred EEEEEC
Confidence 999997
No 153
>PRK06107 aspartate aminotransferase; Provisional
Probab=98.53 E-value=6.6e-07 Score=65.56 Aligned_cols=72 Identities=15% Similarity=0.072 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHh----CC--CCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEE
Q psy17798 26 AVEDARQEIATLI----NC--DPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLG 99 (110)
Q Consensus 26 ~~~~~R~~la~~l----~~--~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~ 99 (110)
+..++|+++++++ +. ++++|++|+|+++|+++++.++. ++||+|++++..|+.+.... ...|..++.
T Consensus 71 G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~~~----~~gd~vl~~~p~y~~y~~~~---~~~~~~~~~ 143 (402)
T PRK06107 71 GTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLALMATL----EAGDEVIIPAPYWVSYPDMV---LANDGTPVI 143 (402)
T ss_pred CCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhc----CCCCEEEEecCCCcCHHHHH---HHcCCEEEE
Confidence 4557777777655 44 68999999999999999998875 89999999888777765443 335677778
Q ss_pred ecCCC
Q psy17798 100 SNPGQ 104 (110)
Q Consensus 100 v~~~~ 104 (110)
+++++
T Consensus 144 v~~~~ 148 (402)
T PRK06107 144 VACPE 148 (402)
T ss_pred ecCCc
Confidence 88763
No 154
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=98.53 E-value=9.7e-07 Score=63.88 Aligned_cols=67 Identities=9% Similarity=0.064 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcC---CCChhHHHHHHHHHhCCcEEE
Q psy17798 25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQ---TEHKCVLDSCRILEGEGFNVL 98 (110)
Q Consensus 25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~---~e~ps~~~~~~~l~~~g~~v~ 98 (110)
+...++++.+|+++|++++++++++|+++++..++.++. ++||+|+++. ..|+++... .+..|+++.
T Consensus 54 ~~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~al~----~~gd~Vli~~~d~p~~~s~~~~---~~l~ga~~~ 123 (346)
T TIGR03576 54 IFEEKVQELGREHLGGPEEKILVFNRTSSAILATILALE----PPGRKVVHYLPEKPAHPSIPRS---CKLAGAEYF 123 (346)
T ss_pred HHHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHHhC----CCCCEEEECCCCCCCchhHHHH---HHHcCCEEe
Confidence 567889999999999999999999999999999999987 8999999754 355554433 344566653
No 155
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=98.52 E-value=1.2e-06 Score=65.35 Aligned_cols=74 Identities=9% Similarity=0.106 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHh-----hccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEe
Q psy17798 26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARF-----YKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGS 100 (110)
Q Consensus 26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~-----~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v 100 (110)
...++++.+|++++++ ++++++|+|+|+.+++.++... .+++||+||++..+|+++..++. ..|++++++
T Consensus 64 ~~~~fe~~lA~~~g~~--~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~---~~G~~pv~v 138 (438)
T PRK15407 64 FNDAFEKKLAEFLGVR--YALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPII---QNGLVPVFV 138 (438)
T ss_pred hHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHH---HcCCEEEEE
Confidence 4578999999999974 6999999999999998876310 13789999999999999887764 469999999
Q ss_pred cCCC
Q psy17798 101 NPGQ 104 (110)
Q Consensus 101 ~~~~ 104 (110)
+++.
T Consensus 139 dvd~ 142 (438)
T PRK15407 139 DVEL 142 (438)
T ss_pred ecCC
Confidence 9874
No 156
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=98.51 E-value=8.2e-07 Score=63.50 Aligned_cols=66 Identities=12% Similarity=0.132 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEec
Q psy17798 27 VEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSN 101 (110)
Q Consensus 27 ~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~ 101 (110)
..++|+.+|+++++++++|++|+|+++++..+++++ .+| .|++++..|+.+... ++..|++++.+|
T Consensus 49 ~~~lr~~la~~~~~~~~~i~~t~G~~~~i~~~~~~l-----~~g-~vl~~~p~y~~~~~~---~~~~g~~~~~~~ 114 (330)
T TIGR01140 49 YDELRAAAAAYYGLPAASVLPVNGAQEAIYLLPRLL-----APG-RVLVLAPTYSEYARA---WRAAGHEVVELP 114 (330)
T ss_pred HHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHHh-----CCC-eEEEeCCCcHHHHHH---HHHcCCEEEEeC
Confidence 489999999999999999999999999999987653 466 688776666665544 456799999887
No 157
>KOG0259|consensus
Probab=98.51 E-value=3.4e-07 Score=66.56 Aligned_cols=76 Identities=14% Similarity=0.236 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHhC------CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCC
Q psy17798 21 WESEKAVEDARQEIATLIN------CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEG 94 (110)
Q Consensus 21 ~~~~~~~~~~R~~la~~l~------~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g 94 (110)
+....++..+|+++|++++ .++++|++|+|.++|+.+++.++. +||.+|+++..-||-+.... +..|
T Consensus 99 Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~LA----~p~aNILlPrPGfp~Y~~~a---~~~~ 171 (447)
T KOG0259|consen 99 YAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAISSLA----NPGANILLPRPGFPLYDTRA---IYSG 171 (447)
T ss_pred cCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccchHHHHHHHHHhc----CCCCceecCCCCCchHHHhh---hhcC
Confidence 3445678899999999986 367999999999999999999998 89999999887777655432 4468
Q ss_pred cEEEEecCC
Q psy17798 95 FNVLGSNPG 103 (110)
Q Consensus 95 ~~v~~v~~~ 103 (110)
++|+...+-
T Consensus 172 lEVR~ydlL 180 (447)
T KOG0259|consen 172 LEVRYYDLL 180 (447)
T ss_pred ceeEeeccc
Confidence 898886543
No 158
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=98.50 E-value=7.6e-07 Score=65.40 Aligned_cols=79 Identities=13% Similarity=0.069 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCcE
Q psy17798 18 AYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFN 96 (110)
Q Consensus 18 ~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~ 96 (110)
..++........+++.+|++.++ +++++|+|+++|+++++.++. ++||+|+++...|++....+... ...|++
T Consensus 46 ~Y~R~~npt~~~Le~~lA~leg~--e~ivvt~gg~~Ai~~~l~all----~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi~ 119 (388)
T PRK08861 46 DYTRSGNPNRGLLEQTLSELESG--KGAVVTNCGTSALNLWVSALL----GPDDLIVAPHDCYGGTYRLFNTRANKGDFK 119 (388)
T ss_pred cccCCCCchHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHHHc----CCCCEEEEcCCchHHHHHHHHHHHhcCCeE
Confidence 34444556788899999999984 799999999999999999886 89999999988888766666554 456788
Q ss_pred EEEecC
Q psy17798 97 VLGSNP 102 (110)
Q Consensus 97 v~~v~~ 102 (110)
+++++.
T Consensus 120 v~~vd~ 125 (388)
T PRK08861 120 VQFVDQ 125 (388)
T ss_pred EEEECC
Confidence 888764
No 159
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=98.50 E-value=1.1e-06 Score=64.24 Aligned_cols=74 Identities=8% Similarity=0.035 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCcEEEEec
Q psy17798 23 SEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFNVLGSN 101 (110)
Q Consensus 23 ~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~v~~v~ 101 (110)
.....+++++.+|+++|+ ++++++++++.|++.++. +. ++||+||++..+|+++...|..+ +..|+++++++
T Consensus 45 ~~p~~~~le~~la~l~g~--~~~l~~~sG~~al~~~l~-ll----~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd 117 (378)
T TIGR01329 45 GNPTRTALESLLAKLDKA--DRAFAFSSGMAALDVITR-LL----NNGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVHVD 117 (378)
T ss_pred CChHHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHH-Hh----CCCCEEEEcCCCchHHHHHHHHHHHHcCcEEEEeC
Confidence 344578999999999998 455555666679888765 44 79999999999999988877765 67899999998
Q ss_pred CC
Q psy17798 102 PG 103 (110)
Q Consensus 102 ~~ 103 (110)
++
T Consensus 118 ~~ 119 (378)
T TIGR01329 118 TT 119 (378)
T ss_pred CC
Confidence 75
No 160
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=98.49 E-value=1.4e-06 Score=64.21 Aligned_cols=80 Identities=11% Similarity=0.092 Sum_probs=64.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHH-HHhCCc
Q psy17798 17 HAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRI-LEGEGF 95 (110)
Q Consensus 17 ~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~-l~~~g~ 95 (110)
|..++...+..+++++.+|++.|++ +.++++++++|+..++.++. ++||+|+++...|++....+.. ++..|+
T Consensus 56 ~~y~r~~~p~~~~le~~lA~l~g~~--~~i~~ssG~~Ai~~~l~all----~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi 129 (398)
T PRK08249 56 HIYSRNTNPTVQAFEEKVRILEGAE--AATAFSTGMAAISNTLYTFL----KPGDRVVSIKDTYGGTNKIFTEFLPRMGV 129 (398)
T ss_pred ccccCCCChHHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhc----CCCCEEEEcCCchHHHHHHHHHHHhhCCe
Confidence 5556666778899999999999964 45666666889999988876 7999999999999988777765 467899
Q ss_pred EEEEecC
Q psy17798 96 NVLGSNP 102 (110)
Q Consensus 96 ~v~~v~~ 102 (110)
++++++.
T Consensus 130 ~v~~vd~ 136 (398)
T PRK08249 130 DVTLCET 136 (398)
T ss_pred EEEEcCC
Confidence 9988764
No 161
>PLN02263 serine decarboxylase
Probab=98.49 E-value=2.4e-06 Score=64.09 Aligned_cols=97 Identities=18% Similarity=0.165 Sum_probs=72.2
Q ss_pred hhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCc--EEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHH
Q psy17798 7 NAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKE--IIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVL 84 (110)
Q Consensus 7 ~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~--i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~ 84 (110)
+..++|-. ....+..+.+...++-+.+++++|.++++ -+||+|+|||+-..+.+.... .++..++++..-|.|+.
T Consensus 116 nN~Gdp~~-~s~~~~~s~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~--~~~~vvy~S~~aH~Sv~ 192 (470)
T PLN02263 116 NNLGDPFI-ESNYGVHSRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREV--FPDGILYASRESHYSVF 192 (470)
T ss_pred cCCCCccc-cCCcchhHHHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhh--cCCcEEEEcCCccHHHH
Confidence 33444443 22223356777888999999999987643 688999999998887765421 24558899999999999
Q ss_pred HHHHHHHhCCcEEEEecCCCCcccc
Q psy17798 85 DSCRILEGEGFNVLGSNPGQGGNFL 109 (110)
Q Consensus 85 ~~~~~l~~~g~~v~~v~~~~~G~~~ 109 (110)
.+... .|++++.||+|++|.+|
T Consensus 193 KAa~l---lgi~~~~Vp~d~~g~mD 214 (470)
T PLN02263 193 KAARM---YRMECVKVDTLVSGEID 214 (470)
T ss_pred HHHHh---cCCcceEeccCCCCcCc
Confidence 87765 58899999999988876
No 162
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=98.49 E-value=1.6e-06 Score=62.92 Aligned_cols=77 Identities=16% Similarity=0.094 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798 25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ 104 (110)
Q Consensus 25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~ 104 (110)
....++-+.+++++++ ..++.++|+|.|+.+++.++.. ++||+|+++...+++...++. ..|++++++.+|+
T Consensus 25 ~~~~~fE~~~a~~~g~--~~~~~~~sgt~Al~~al~~l~~---~~gdeVi~p~~t~~~~~~ai~---~~G~~pv~~Di~~ 96 (363)
T PF01041_consen 25 PYVEEFEKEFAEYFGV--KYAVAVSSGTSALHLALRALGL---GPGDEVIVPAYTFPATASAIL---WAGAEPVFVDIDP 96 (363)
T ss_dssp HHHHHHHHHHHHHHTS--SEEEEESSHHHHHHHHHHHTTG---GTTSEEEEESSS-THHHHHHH---HTT-EEEEE-BET
T ss_pred HHHHHHHHHHHHHhCC--CeEEEeCChhHHHHHHHHhcCC---CcCceEecCCCcchHHHHHHH---HhccEEEEEeccC
Confidence 3567888899999984 6899999999999999999873 899999999999999888774 4699999999994
Q ss_pred -Ccccc
Q psy17798 105 -GGNFL 109 (110)
Q Consensus 105 -~G~~~ 109 (110)
++.+|
T Consensus 97 ~~~~id 102 (363)
T PF01041_consen 97 ETLNID 102 (363)
T ss_dssp TTSSB-
T ss_pred CcCCcC
Confidence 56554
No 163
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=98.48 E-value=9.7e-07 Score=63.52 Aligned_cols=68 Identities=7% Similarity=0.070 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhCCC-CCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798 28 EDARQEIATLINCD-PKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ 104 (110)
Q Consensus 28 ~~~R~~la~~l~~~-~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~ 104 (110)
.++|+.+|++++++ +++|++|+|+++++.++.. +. ++|+ |++.. |++......++..|++++.+|++.
T Consensus 56 ~~L~~~ia~~~~~~~~~~I~i~~Gs~e~i~~l~~-~~----~~g~-v~v~~---P~y~~y~~~~~~~g~~~~~v~~~~ 124 (339)
T PRK06959 56 DGLAACAARYYGAPDAAHVLPVAGSQAAIRALPA-LL----PRGR-VGIAP---LAYSEYAPAFARHGHRVVPLDEAA 124 (339)
T ss_pred HHHHHHHHHHhCCCCcccEEECcCHHHHHHHHHH-hc----CCCe-EEEcC---CCcHHHHHHHHHCCCEEEeecccc
Confidence 78999999999996 6999999999999997754 33 5666 66544 555544445566799999998864
No 164
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=98.48 E-value=7.1e-07 Score=63.59 Aligned_cols=71 Identities=15% Similarity=0.176 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecC
Q psy17798 23 SEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNP 102 (110)
Q Consensus 23 ~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~ 102 (110)
..+..+++|+.++++++++ + .++++++++++..+++++. ++||+|+++..+|+++...+ +..|++++.++.
T Consensus 44 ~~~~~~~l~~~la~~~~~~-~-~iv~~sg~~a~~~~~~~~~----~~gd~Vl~~~~~~~~~~~~~---~~~g~~~~~~~~ 114 (349)
T cd06454 44 TSDLHEELEEELAEFHGKE-A-ALVFSSGYAANDGVLSTLA----GKGDLIISDSLNHASIIDGI---RLSGAKKRIFKH 114 (349)
T ss_pred CchHHHHHHHHHHHHhCCC-C-EEEeccHHHHHHHHHHHhc----CCCCEEEEehhhhHHHHHHH---HHcCCceEEecC
Confidence 4567789999999999974 3 4555555778877777765 79999999998998876554 446888887753
No 165
>PRK09028 cystathionine beta-lyase; Provisional
Probab=98.47 E-value=2.6e-06 Score=62.72 Aligned_cols=74 Identities=15% Similarity=0.152 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHH-HHHHhCCcEEEEecC
Q psy17798 24 EKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSC-RILEGEGFNVLGSNP 102 (110)
Q Consensus 24 ~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~-~~l~~~g~~v~~v~~ 102 (110)
.+....+|+.||++.++ +++++++|+++|++.++.++. ++||+||+++..|++....+ ..+++.|+++.+++.
T Consensus 60 npt~~~Le~~iA~le~~--~~~~~~~sG~~Ai~~~l~all----~~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi~v~~v~~ 133 (394)
T PRK09028 60 TPTHFAFQAAIVELEGG--AGTALYPSGAAAISNALLSFL----KAGDHLLMVDSCYEPTRDLCDKILKGFGIETTYYDP 133 (394)
T ss_pred CchHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHHh----CCCCEEEEECCCcHHHHHHHHHhhhhcceEEEEECC
Confidence 34567899999999765 479999999999999999886 89999999999997776543 445678999988875
Q ss_pred C
Q psy17798 103 G 103 (110)
Q Consensus 103 ~ 103 (110)
+
T Consensus 134 ~ 134 (394)
T PRK09028 134 M 134 (394)
T ss_pred C
Confidence 4
No 166
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=98.46 E-value=2.4e-06 Score=62.68 Aligned_cols=79 Identities=14% Similarity=0.147 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798 19 YGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL 98 (110)
Q Consensus 19 ~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~ 98 (110)
.++...+...++++.+|+++++ +++++++|++.|+..++.++. ++||+|+++...|+++...+..++..|++++
T Consensus 47 y~r~~np~~~~lE~~lA~l~g~--~~~l~~~sG~~Ai~~~l~~ll----~~GD~Vlv~~~~y~~~~~~~~~~~~~g~~v~ 120 (385)
T PRK08574 47 YSREENPTLRPLEEALAKLEGG--VDALAFNSGMAAISTLFFSLL----KAGDRVVLPMEAYGTTLRLLKSLEKFGVKVV 120 (385)
T ss_pred EECCCCccHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHHh----CCCCEEEEcCCCchhHHHHHHHhhccCcEEE
Confidence 3344455688899999999986 467778889999999998876 8999999999999998887776666789888
Q ss_pred EecCC
Q psy17798 99 GSNPG 103 (110)
Q Consensus 99 ~v~~~ 103 (110)
.+..+
T Consensus 121 ~~~~d 125 (385)
T PRK08574 121 LAYPS 125 (385)
T ss_pred EECCC
Confidence 87654
No 167
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=98.46 E-value=1.2e-06 Score=64.24 Aligned_cols=79 Identities=11% Similarity=0.100 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCcE
Q psy17798 18 AYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFN 96 (110)
Q Consensus 18 ~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~ 96 (110)
..++.......++++.+|++.+. +++++|+|+++|+.+++.++. ++||+|+++...|++....+..+ ...|++
T Consensus 44 ~Y~R~~~p~~~~le~~lA~l~g~--~~v~~~~gg~~Ai~~~l~all----~~GD~Vl~~~p~y~~~~~~~~~~~~~~~~~ 117 (382)
T TIGR02080 44 DYSRSGNPTRDLLQQALAELEGG--AGAVVTNTGMSAIHLVTTALL----GPDDLLVAPHDCYGGTYRLLNALAKKGCFR 117 (382)
T ss_pred cccCCCCchHHHHHHHHHHHhCC--CcEEEEcCHHHHHHHHHHHHc----CCCCEEEEcCCCcHHHHHHHHHHHhhcCeE
Confidence 34444556678899999999984 689999999999999999986 89999999999999877777665 445678
Q ss_pred EEEecC
Q psy17798 97 VLGSNP 102 (110)
Q Consensus 97 v~~v~~ 102 (110)
+..++.
T Consensus 118 v~~~d~ 123 (382)
T TIGR02080 118 VLFVDQ 123 (382)
T ss_pred EEEECC
Confidence 877753
No 168
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=98.46 E-value=7.9e-07 Score=63.81 Aligned_cols=73 Identities=18% Similarity=0.266 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHhC------CCCC-cEEEeCChHHHHHHHHHHh-HHhhccCCCEEEEcCCCChhHHHHHHHHHhCCc
Q psy17798 24 EKAVEDARQEIATLIN------CDPK-EIIFTSGATESNNIAVKGV-ARFYKEKKKHVITTQTEHKCVLDSCRILEGEGF 95 (110)
Q Consensus 24 ~~~~~~~R~~la~~l~------~~~~-~i~~t~gat~a~~~i~~~l-~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~ 95 (110)
..+.+++|+++|++++ .+++ +|++++|+++++..+...+ . ++|+.|++....|+.+.... +..|+
T Consensus 43 ~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~~~~~~~~~~~~----~~~~~vlv~~P~y~~~~~~~---~~~g~ 115 (363)
T PF00155_consen 43 PQGYPELREAIADFLGRRYGVPVDPEANILVTSGAQAALFLLLRLLKI----NPGDTVLVPDPCYPSYIEAA---RLLGA 115 (363)
T ss_dssp TTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHHHHHHHHHHHHHS----STTSEEEEEESSSTHHHHHH---HHTTS
T ss_pred chhhHHHHHHHHHHhhhccCcccccceEEEEecccccchhhhhhcccc----cccccceecCCccccccccc---cccCc
Confidence 3467899999999998 7888 9999999999999988887 4 78999999888888876555 45699
Q ss_pred EEEEecCC
Q psy17798 96 NVLGSNPG 103 (110)
Q Consensus 96 ~v~~v~~~ 103 (110)
+++.+|++
T Consensus 116 ~~~~~~~~ 123 (363)
T PF00155_consen 116 EVIPVPLD 123 (363)
T ss_dssp EEEEEEEE
T ss_pred eeeecccc
Confidence 99999965
No 169
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=98.45 E-value=1.4e-06 Score=63.73 Aligned_cols=78 Identities=14% Similarity=0.150 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCcEEE
Q psy17798 20 GWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFNVL 98 (110)
Q Consensus 20 ~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~v~ 98 (110)
++...+...++++.+|+++|+ +.+++++|+++|+..++.++. ++||+|+++...|++....+..+ +..|++++
T Consensus 49 ~r~~~p~~~~le~~la~l~g~--~~~~~~~sG~~Ai~~al~al~----~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~~v~ 122 (380)
T TIGR01325 49 SRYANPTVAAFEERIAALEGA--ERAVATATGMSAIQAALMTLL----QAGDHVVASRSLFGSTVGFISEILPRFGIEVS 122 (380)
T ss_pred ecCCCchHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHHh----CCCCEEEEecCCcchHHHHHHHHHHHhCCEEE
Confidence 333455688999999999987 467889999999999998876 79999999988888776666544 67899999
Q ss_pred EecCC
Q psy17798 99 GSNPG 103 (110)
Q Consensus 99 ~v~~~ 103 (110)
.++++
T Consensus 123 ~v~~~ 127 (380)
T TIGR01325 123 FVDPT 127 (380)
T ss_pred EECCC
Confidence 99875
No 170
>PRK07582 cystathionine gamma-lyase; Validated
Probab=98.43 E-value=2.4e-06 Score=62.17 Aligned_cols=80 Identities=13% Similarity=0.106 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHH-HHHHhCCcEE
Q psy17798 19 YGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSC-RILEGEGFNV 97 (110)
Q Consensus 19 ~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~-~~l~~~g~~v 97 (110)
.++...+...++++++|++. . ++.++++++++|++.++.++. ++||+||++...|+.+.... ..++..|+++
T Consensus 45 y~ry~~p~~~~Le~~lA~l~--~-~~~v~~~sG~~Ai~~~l~all----~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~~v 117 (366)
T PRK07582 45 YGRASNPTWRALEAALGELE--G-AEALVFPSGMAAITAVLRALL----RPGDTVVVPADGYYQVRALAREYLAPLGVTV 117 (366)
T ss_pred eECCCCccHHHHHHHHHHHc--C-CCEEEECCHHHHHHHHHHHhc----CCCCEEEEeCCCcHhHHHHHHHHHhcCeEEE
Confidence 33344567889999999998 3 455666666789999998875 89999999888886665443 3456789999
Q ss_pred EEecCCCC
Q psy17798 98 LGSNPGQG 105 (110)
Q Consensus 98 ~~v~~~~~ 105 (110)
+.++.+++
T Consensus 118 ~~v~~~~~ 125 (366)
T PRK07582 118 REAPTAGM 125 (366)
T ss_pred EEECCCCh
Confidence 99998754
No 171
>PRK08064 cystathionine beta-lyase; Provisional
Probab=98.43 E-value=1.4e-06 Score=63.95 Aligned_cols=80 Identities=18% Similarity=0.118 Sum_probs=61.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCc
Q psy17798 17 HAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGF 95 (110)
Q Consensus 17 ~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~ 95 (110)
+..++...+...++++.+|++.|++ +.+++++| +.++..++. +. ++||+||++..+|++....|..+ +..|+
T Consensus 46 ~~y~r~~~p~~~~le~~lA~l~g~~-~~v~~~sG-~~ai~~~l~-~l----~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~ 118 (390)
T PRK08064 46 YDYSRSGNPTREALEDIIAELEGGT-KGFAFASG-MAAISTAFL-LL----SKGDHVLISEDVYGGTYRMITEVLSRFGI 118 (390)
T ss_pred CcccCCCChhHHHHHHHHHHHhCCC-CeEEECCH-HHHHHHHHH-Hh----CCCCEEEEccCccchHHHHHHHHHHHcCC
Confidence 3445555677889999999999987 46666555 567776664 33 78999999999999887777654 67899
Q ss_pred EEEEecCC
Q psy17798 96 NVLGSNPG 103 (110)
Q Consensus 96 ~v~~v~~~ 103 (110)
+++.++++
T Consensus 119 ~v~~v~~~ 126 (390)
T PRK08064 119 EHTFVDMT 126 (390)
T ss_pred EEEEECCC
Confidence 99999874
No 172
>PTZ00376 aspartate aminotransferase; Provisional
Probab=98.43 E-value=3.5e-07 Score=67.07 Aligned_cols=79 Identities=11% Similarity=0.078 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHhC------CCCCcEE--EeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHh
Q psy17798 21 WESEKAVEDARQEIATLIN------CDPKEII--FTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEG 92 (110)
Q Consensus 21 ~~~~~~~~~~R~~la~~l~------~~~~~i~--~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~ 92 (110)
+....++.++|+++|+++. +++++|+ .|.|+++|+.+++..+. .++++||+|++.+..||.+. ..++.
T Consensus 68 Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~-~~~~~Gd~Vlv~~P~y~~~~---~~~~~ 143 (404)
T PTZ00376 68 YLPIEGLQSFIEAAQKLLFGEASYALAEKRIATVQALSGTGALRLGFEFLK-RFLPAGTTVYVSNPTWPNHV---NIFKS 143 (404)
T ss_pred CCCCCCCHHHHHHHHHHhcCCCccccccCeEEEeeccCcchHHHHHHHHHH-HhcCCCCEEEEcCCCchhHH---HHHHH
Confidence 3345678899999999872 4778998 49999999998876432 12389999997665555554 44466
Q ss_pred CCcEEEEecCC
Q psy17798 93 EGFNVLGSNPG 103 (110)
Q Consensus 93 ~g~~v~~v~~~ 103 (110)
.|++++.+|++
T Consensus 144 ~G~~~~~v~l~ 154 (404)
T PTZ00376 144 AGLNVKEYRYY 154 (404)
T ss_pred cCCceeecccc
Confidence 89999999983
No 173
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=98.42 E-value=2.6e-06 Score=61.99 Aligned_cols=81 Identities=14% Similarity=0.135 Sum_probs=66.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCc
Q psy17798 17 HAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGF 95 (110)
Q Consensus 17 ~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~ 95 (110)
+..++...+...++++.+|++.++ ++.+++++++.|+..++.++. ++||+|+++...|++....+... +..|+
T Consensus 32 ~~y~r~~~p~~~~le~~la~l~g~--~~a~~~~sG~~Ai~~~l~~l~----~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~ 105 (369)
T cd00614 32 YIYSRIGNPTVDALEKKLAALEGG--EAALAFSSGMAAISTVLLALL----KAGDHVVASDDLYGGTYRLFERLLPKLGI 105 (369)
T ss_pred ceeECCCChhHHHHHHHHHHHHCC--CCEEEEcCHHHHHHHHHHHHc----CCCCEEEECCCCcchHHHHHHHHHhhcCe
Confidence 455555567888999999999986 456777888999999999886 79999999999998887766554 56899
Q ss_pred EEEEecCC
Q psy17798 96 NVLGSNPG 103 (110)
Q Consensus 96 ~v~~v~~~ 103 (110)
++.+++.+
T Consensus 106 ~~~~v~~~ 113 (369)
T cd00614 106 EVTFVDPD 113 (369)
T ss_pred EEEEeCCC
Confidence 99998875
No 174
>PRK07503 methionine gamma-lyase; Provisional
Probab=98.42 E-value=1.9e-06 Score=63.54 Aligned_cols=81 Identities=17% Similarity=0.126 Sum_probs=61.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHH-HHHhCCc
Q psy17798 17 HAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCR-ILEGEGF 95 (110)
Q Consensus 17 ~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~-~l~~~g~ 95 (110)
+..++...+...++++.+|++.|++. .++++|++.|+.+++.++. ++||+||++...|+.....+. .++..|+
T Consensus 57 ~~y~r~~~p~~~~le~~lA~l~g~~~--~i~~~sG~~Al~~~l~~ll----~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~ 130 (403)
T PRK07503 57 HFYSRISNPTLALLEQRMASLEGGEA--AVALASGMGAITATLWTLL----RPGDEVIVDQTLYGCTFAFLHHGLGEFGV 130 (403)
T ss_pred ceeeCCCCchHHHHHHHHHHHhCCCc--EEEEcCHHHHHHHHHHHHc----CCCCEEEEccCccchHHHHHHHHHhhCCE
Confidence 44444455678899999999999853 4666677889999988775 899999998888876554443 3467899
Q ss_pred EEEEecCC
Q psy17798 96 NVLGSNPG 103 (110)
Q Consensus 96 ~v~~v~~~ 103 (110)
+++.++++
T Consensus 131 ~v~~vd~~ 138 (403)
T PRK07503 131 TVRHVDLT 138 (403)
T ss_pred EEEEeCCC
Confidence 99999875
No 175
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=98.41 E-value=1.5e-06 Score=63.77 Aligned_cols=79 Identities=10% Similarity=0.103 Sum_probs=63.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCc
Q psy17798 17 HAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGF 95 (110)
Q Consensus 17 ~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~ 95 (110)
|..++......+++++.+|++.+. +++++++|+++++..++.++. ++||+|+++...|++....+..+ ...|+
T Consensus 44 ~~Y~R~~~pt~~~L~~~lA~l~g~--~~~i~~~sg~~Ai~~~l~~l~----~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi 117 (386)
T PRK08045 44 HDYSRRGNPTRDVVQRALAELEGG--AGAVLTNTGMSAIHLVTTVFL----KPGDLLVAPHDCYGGSYRLFDSLAKRGCY 117 (386)
T ss_pred ceeeCCCCccHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHHHc----CCCCEEEEcCCCcHHHHHHHHHHHhhCCe
Confidence 344455556788999999999985 469999999999999998876 89999999999999877777666 34556
Q ss_pred EEEEec
Q psy17798 96 NVLGSN 101 (110)
Q Consensus 96 ~v~~v~ 101 (110)
++..++
T Consensus 118 ~v~~vd 123 (386)
T PRK08045 118 RVLFVD 123 (386)
T ss_pred EEEEeC
Confidence 777765
No 176
>PRK07179 hypothetical protein; Provisional
Probab=98.39 E-value=5.2e-06 Score=60.92 Aligned_cols=87 Identities=8% Similarity=0.035 Sum_probs=61.7
Q ss_pred hhhhhhcCCCCC-cCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCCh
Q psy17798 3 PYLTNAYGNPHS-RTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHK 81 (110)
Q Consensus 3 ~~~~~~~~n~~~-~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~p 81 (110)
+.++....|++. +.|..+.. ...++.+.+|++++++ .++|++|+++|+..+++++. .+|+.|+++..+|+
T Consensus 79 ~~~~~~~~~~~~s~~~~~~~~---~~~~le~~la~~~g~~--~~~~~~sG~~An~~~l~~l~----~~g~~v~~~~~~h~ 149 (407)
T PRK07179 79 AALQEEGDSLVMSAVFLHDDS---PKPQFEKKLAAFTGFE--SCLLCQSGWAANVGLLQTIA----DPNTPVYIDFFAHM 149 (407)
T ss_pred HHHHHhCCCCCccccccCCch---HHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHhC----CCCCEEEEECCcCH
Confidence 344444555632 24443322 4556678999999974 57889999999999999987 78999999999999
Q ss_pred hHHHHHHHHHhCCcEEEEec
Q psy17798 82 CVLDSCRILEGEGFNVLGSN 101 (110)
Q Consensus 82 s~~~~~~~l~~~g~~v~~v~ 101 (110)
++.... +..|+++..++
T Consensus 150 s~~~~~---~~~g~~~~~~~ 166 (407)
T PRK07179 150 SLWEGV---RAAGAQAHPFR 166 (407)
T ss_pred HHHHHH---HHCCCeEEEec
Confidence 986543 33566666554
No 177
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=98.39 E-value=2.2e-06 Score=63.45 Aligned_cols=78 Identities=12% Similarity=0.092 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCcEEE
Q psy17798 20 GWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFNVL 98 (110)
Q Consensus 20 ~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~v~ 98 (110)
++...+...++++.+|++.|+ +..+++++++.|+..++.++. ++||+||++...|++....+... +..|++++
T Consensus 52 sr~~~p~~~~le~~lA~l~g~--~~~v~~~sG~~Ai~~al~~l~----~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~ 125 (418)
T TIGR01326 52 SRLMNPTTDVLEQRIAALEGG--VAALAVASGQAAITYAILNLA----QAGDNIVSSSYLYGGTYNLFKHTLKRLGIEVR 125 (418)
T ss_pred ECCCChhHHHHHHHHHHHhCC--CeEEEEccHHHHHHHHHHHHh----CCCCEEEEECCCcHHHHHHHHHHHHHcCcEEE
Confidence 333445678999999999996 467899999999999998876 79999999999998877666554 67899999
Q ss_pred EecCC
Q psy17798 99 GSNPG 103 (110)
Q Consensus 99 ~v~~~ 103 (110)
+++.+
T Consensus 126 ~v~~~ 130 (418)
T TIGR01326 126 FVDPD 130 (418)
T ss_pred EECCC
Confidence 98864
No 178
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=98.39 E-value=1e-06 Score=64.72 Aligned_cols=62 Identities=18% Similarity=0.199 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHh------CCCCCcEEEeCChHHHHHHHHHHhHHhh-ccCCCEEEE-cCCCChhHHHH
Q psy17798 25 KAVEDARQEIATLI------NCDPKEIIFTSGATESNNIAVKGVARFY-KEKKKHVIT-TQTEHKCVLDS 86 (110)
Q Consensus 25 ~~~~~~R~~la~~l------~~~~~~i~~t~gat~a~~~i~~~l~~~~-~~~g~~vl~-~~~e~ps~~~~ 86 (110)
.+..++|++||+++ ++++++|++|+|+++++.+++.++.... ..+||.|++ ...+||.+...
T Consensus 74 ~G~~~LR~aia~~~~~~~g~~v~~~~I~it~Ga~~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~ 143 (416)
T PRK09440 74 QGKDELIEALAALLNERYGWNISPQNIALTNGSQSAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYADA 143 (416)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCChhhEEEccChHHHHHHHHHHHhccccCCCCCeEEEecCCCchhhHHH
Confidence 45678999999988 3689999999999999999999886100 015889998 58888887654
No 179
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=98.37 E-value=1.7e-06 Score=62.81 Aligned_cols=73 Identities=19% Similarity=0.227 Sum_probs=53.1
Q ss_pred CCCcCChHHHH----HHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHH
Q psy17798 12 PHSRTHAYGWE----SEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSC 87 (110)
Q Consensus 12 ~~~~~~~~~~~----~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~ 87 (110)
|++|.|..|.. ..+.++++|+.+|++++++ +.++|++|++ ++..++..+. ++++.|+++..+|+|+..++
T Consensus 39 p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~-~~l~~~sG~~-a~~~~~~~~~----~~~d~ii~d~~~H~sv~~~~ 112 (370)
T PRK05937 39 PHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAP-EAFIVPSGYM-ANLGLCAHLS----SVTDYVLWDEQVHISVVYSL 112 (370)
T ss_pred CCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCC-eEEEECChHH-HHHHHHHHhC----CCCCEEEEEhhhhHHHHHHH
Confidence 54434555555 7789999999999999984 4578888774 4433333333 67889999899999999888
Q ss_pred HHH
Q psy17798 88 RIL 90 (110)
Q Consensus 88 ~~l 90 (110)
..+
T Consensus 113 ~~~ 115 (370)
T PRK05937 113 SVI 115 (370)
T ss_pred HHc
Confidence 654
No 180
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=98.36 E-value=3.1e-06 Score=63.46 Aligned_cols=71 Identities=10% Similarity=0.077 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798 24 EKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG 103 (110)
Q Consensus 24 ~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~ 103 (110)
...+.++|++++++++. ++|++|+|+++|+++++.++. ++|| |++++..++++.... +..|++++.+|++
T Consensus 77 ~~g~~~Lreaia~~~~~--~~vv~t~ggt~A~~~~~~all----~pGD-Vii~~p~~~~~~~~i---~~~G~~~v~v~~~ 146 (460)
T PRK13238 77 SRSYYRLEDAVKDIFGY--PYTIPTHQGRAAEQILFPVLI----KKGD-VVPSNYHFDTTRAHI---ELNGATAVDLVID 146 (460)
T ss_pred CCCHHHHHHHHHHHhCC--CcEEECCCHHHHHHHHHHHhC----CCCC-EEccCCcccchHHHH---HHcCCEEEEEecc
Confidence 34678999999999986 579999999999999998886 8999 888887777765433 3479999999986
Q ss_pred C
Q psy17798 104 Q 104 (110)
Q Consensus 104 ~ 104 (110)
+
T Consensus 147 ~ 147 (460)
T PRK13238 147 E 147 (460)
T ss_pred c
Confidence 4
No 181
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=98.35 E-value=2.9e-06 Score=62.10 Aligned_cols=79 Identities=13% Similarity=0.154 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHH-HHhCCcEE
Q psy17798 19 YGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRI-LEGEGFNV 97 (110)
Q Consensus 19 ~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~-l~~~g~~v 97 (110)
.++...+....+.+.+|++.++ +++++++|+++|+..++.++. ++||+||+++..|++....+.. ++..|+++
T Consensus 44 Y~r~gnPt~~~lE~~lA~l~g~--~~~~~~~sG~~Ai~~al~all----~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi~v 117 (377)
T TIGR01324 44 YGRRGTLTHFALQDAMCELEGG--AGCYLYPSGLAAVTNSILAFV----KAGDHVLMVDSAYEPTRYFCDIVLKRMGVDI 117 (377)
T ss_pred ccCCCCccHHHHHHHHHHHhCC--CcEEEECcHHHHHHHHHHHhc----CCCCEEEEcCCCcHHHHHHHHHHHHhcCcEE
Confidence 3344446677899999999986 479999999999999999886 8999999999999876654433 46678998
Q ss_pred EEecCC
Q psy17798 98 LGSNPG 103 (110)
Q Consensus 98 ~~v~~~ 103 (110)
..++.+
T Consensus 118 ~~~d~~ 123 (377)
T TIGR01324 118 TYYDPL 123 (377)
T ss_pred EEECCC
Confidence 887653
No 182
>PRK05939 hypothetical protein; Provisional
Probab=98.34 E-value=3.6e-06 Score=62.01 Aligned_cols=81 Identities=12% Similarity=0.148 Sum_probs=64.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcE
Q psy17798 17 HAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFN 96 (110)
Q Consensus 17 ~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~ 96 (110)
|..++...+...++.+.+|++.++.. .|+|++| +.|+..++.++. ++||+||++..+|++....+..++..|++
T Consensus 39 ~~Y~r~g~p~~~~lE~~la~leg~~~-~v~~ssG-~~Ai~~~l~all----~~Gd~Vv~~~~~y~~t~~~~~~l~~~G~~ 112 (397)
T PRK05939 39 FTYARQGTPTTAALEAKITKMEGGVG-TVCFATG-MAAIAAVFLTLL----RAGDHLVSSQFLFGNTNSLFGTLRGLGVE 112 (397)
T ss_pred CCcCCCCCHHHHHHHHHHHHHhCCCe-EEEeCCH-HHHHHHHHHHHc----CCCCEEEECCCccccHHHHHHHHHhcCCE
Confidence 33444445678889999999998753 4555555 799999988876 89999999999999887777777778999
Q ss_pred EEEecCC
Q psy17798 97 VLGSNPG 103 (110)
Q Consensus 97 v~~v~~~ 103 (110)
+++++++
T Consensus 113 v~~v~~~ 119 (397)
T PRK05939 113 VTMVDAT 119 (397)
T ss_pred EEEECCC
Confidence 9999874
No 183
>PRK06234 methionine gamma-lyase; Provisional
Probab=98.34 E-value=6.6e-06 Score=60.60 Aligned_cols=75 Identities=12% Similarity=0.169 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHH-HHhCCcEEEEec
Q psy17798 23 SEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRI-LEGEGFNVLGSN 101 (110)
Q Consensus 23 ~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~-l~~~g~~v~~v~ 101 (110)
......++++.+|++.+.+ ++++++|++.|+..++.++. ++||+|+++...|++....+.. ++..|+++++++
T Consensus 62 ~~p~~~~Le~~iA~~~g~~--~~l~~~sG~~Ai~~al~~ll----~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd 135 (400)
T PRK06234 62 GNPTSTEVENKLALLEGGE--AAVVAASGMGAISSSLWSAL----KAGDHVVASDTLYGCTFALLNHGLTRYGVEVTFVD 135 (400)
T ss_pred CCccHHHHHHHHHHHhCCC--cEEEEcCHHHHHHHHHHHHh----CCCCEEEEecCccchHHHHHHHHHhhCCeEEEEEC
Confidence 3466789999999999963 67888888899988888776 8999999999999887766544 367899999988
Q ss_pred CC
Q psy17798 102 PG 103 (110)
Q Consensus 102 ~~ 103 (110)
.+
T Consensus 136 ~~ 137 (400)
T PRK06234 136 TS 137 (400)
T ss_pred CC
Confidence 64
No 184
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=98.33 E-value=3.8e-06 Score=62.06 Aligned_cols=80 Identities=10% Similarity=0.131 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCcE
Q psy17798 18 AYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFN 96 (110)
Q Consensus 18 ~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~ 96 (110)
..++...+..+++++.+|++.++ ++.|+ ++|+++|+++++.++. ++||+|+++...|++....+..+ +..|++
T Consensus 53 ~y~R~~~p~~~~Le~~lA~l~g~-~~~v~-~~sG~~Ai~~~l~all----~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~ 126 (405)
T PRK08776 53 DYTRSGNPTRDLLGEALAELEGG-AGGVI-TATGMGAINLVLNALL----QPGDTLVVPHDAYGGSWRLFNALAKKGHFA 126 (405)
T ss_pred cccCCCChHHHHHHHHHHHHhCC-CceEE-EcCHHHHHHHHHHHHh----CCCCEEEEccCCchHHHHHHHHHHHhcCcE
Confidence 33444455677899999999997 34555 5555799999999886 89999999888887766555554 556888
Q ss_pred EEEecCC
Q psy17798 97 VLGSNPG 103 (110)
Q Consensus 97 v~~v~~~ 103 (110)
++.++.+
T Consensus 127 v~~v~~~ 133 (405)
T PRK08776 127 LITADLT 133 (405)
T ss_pred EEEECCC
Confidence 8888764
No 185
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=98.32 E-value=5.8e-06 Score=60.73 Aligned_cols=81 Identities=16% Similarity=0.126 Sum_probs=63.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCc
Q psy17798 17 HAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGF 95 (110)
Q Consensus 17 ~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~ 95 (110)
|..++...+...++++.+|++.|++. .++++|++.|+.+++.++. ++||+|+++...|++....+... ...|+
T Consensus 51 ~~y~r~~~p~~~~le~~lA~l~g~~~--av~~~sG~~Ai~~~l~al~----~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~ 124 (391)
T TIGR01328 51 YIYSRLGNPTVSNLEGRIAFLEGTEA--AVATSSGMGAIAATLLTIL----KAGDHLISDECLYGCTFALLEHALTKFGI 124 (391)
T ss_pred CceeCCCCchHHHHHHHHHHHhCCCc--EEEECCHHHHHHHHHHHHh----CCCCEEEEecCcchHHHHHHHHHHhcCCe
Confidence 33344344567899999999999854 6777778889999888876 79999999988888776665554 66899
Q ss_pred EEEEecCC
Q psy17798 96 NVLGSNPG 103 (110)
Q Consensus 96 ~v~~v~~~ 103 (110)
++++++++
T Consensus 125 ~~~~vd~~ 132 (391)
T TIGR01328 125 QVDFINMA 132 (391)
T ss_pred EEEEECCC
Confidence 99998875
No 186
>PLN02483 serine palmitoyltransferase
Probab=98.31 E-value=3.6e-06 Score=63.51 Aligned_cols=73 Identities=16% Similarity=0.317 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEec
Q psy17798 22 ESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSN 101 (110)
Q Consensus 22 ~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~ 101 (110)
...+...++++.+|+++|. ++.|+|++|... +..++.++. ++||.|++++..|+++.... +..|++++.+|
T Consensus 143 g~~~~~~ele~~lA~~~g~-~~ai~~~~G~~a-n~~~i~al~----~~Gd~Vi~d~~~h~s~~~~~---~~~Ga~v~~~~ 213 (489)
T PLN02483 143 GTTKLHRELEELVARFVGK-PAAIVFGMGYAT-NSTIIPALI----GKGGLIISDSLNHNSIVNGA---RGSGATIRVFQ 213 (489)
T ss_pred CCcHHHHHHHHHHHHHhCC-CcEEEECCHHHH-HHHHHHHhC----CCCCEEEEcchhhHHHHHHH---HHcCCeEEEEe
Confidence 3456889999999999994 678888887544 445666665 89999999999999977654 45799999998
Q ss_pred CC
Q psy17798 102 PG 103 (110)
Q Consensus 102 ~~ 103 (110)
.+
T Consensus 214 ~~ 215 (489)
T PLN02483 214 HN 215 (489)
T ss_pred CC
Confidence 65
No 187
>PRK08354 putative aminotransferase; Provisional
Probab=98.30 E-value=6e-06 Score=58.62 Aligned_cols=67 Identities=16% Similarity=0.096 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798 27 VEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ 104 (110)
Q Consensus 27 ~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~ 104 (110)
...+|+++|++++ ++|++|+|+++++.+++.. . .+||+|++....|+.+.... +..|++++.+++|.
T Consensus 42 ~~~l~~~ia~~~~---~~I~vt~G~~~al~~~~~~-~----~~gd~vlv~~P~y~~~~~~~---~~~g~~~~~~~~d~ 108 (311)
T PRK08354 42 YEWLEEEFSKLFG---EPIVITAGITEALYLIGIL-A----LRDRKVIIPRHTYGEYERVA---RFFAARIIKGPNDP 108 (311)
T ss_pred hHHHHHHHHHHHC---CCEEECCCHHHHHHHHHHh-h----CCCCeEEEeCCCcHHHHHHH---HHcCCEEeecCCCH
Confidence 4568999999987 5899999999999988743 3 48999998776666665444 55788888877653
No 188
>PLN02672 methionine S-methyltransferase
Probab=98.29 E-value=8.8e-06 Score=66.20 Aligned_cols=71 Identities=8% Similarity=-0.057 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhCCCC---CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798 27 VEDARQEIATLINCDP---KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG 103 (110)
Q Consensus 27 ~~~~R~~la~~l~~~~---~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~ 103 (110)
...+++.+++..|.+. ++|++|+|+++++..+++++. ++||.|++....|+.+.... +..|++++.+|++
T Consensus 736 r~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL~lll~aLl----~pGD~VLVp~PtY~~Y~~~a---~~~Ga~vv~Vpl~ 808 (1082)
T PLN02672 736 RPSILQFIKSNYGFPTDSCTEFVYGDTSLALFNKLVLCCV----QEGGTLCFPAGSNGTYVSAA---KFLKANFRRIPTK 808 (1082)
T ss_pred HHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHHHHHHHHHc----CCCCEEEEeCCChHHHHHHH---HHcCCEEEEEecc
Confidence 3556666666667644 489999999999999999887 89999998777777766554 4579999999997
Q ss_pred C
Q psy17798 104 Q 104 (110)
Q Consensus 104 ~ 104 (110)
+
T Consensus 809 ~ 809 (1082)
T PLN02672 809 S 809 (1082)
T ss_pred c
Confidence 4
No 189
>PRK05968 hypothetical protein; Provisional
Probab=98.28 E-value=7.2e-06 Score=60.20 Aligned_cols=76 Identities=11% Similarity=0.083 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCcEEEEe
Q psy17798 22 ESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFNVLGS 100 (110)
Q Consensus 22 ~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~v~~v 100 (110)
...+...++++.+|+++|++ +.+++ ++++.|+..++.++. ++||+||++...|++....+... +..|++++++
T Consensus 60 ~~~p~~~~le~~lA~l~g~~-~av~~-~sG~~Ai~~al~al~----~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~v 133 (389)
T PRK05968 60 GDNPTVRAFEEMLAKLEGAE-DARGF-ASGMAAISSTVLSFV----EPGDRIVAVRHVYPDAFRLFETILKRMGVEVDYV 133 (389)
T ss_pred CCChhHHHHHHHHHHHhCCC-cEEEE-CCHHHHHHHHHHHHh----CCCCEEEEeCCCchHHHHHHHHHHHHcCceEEEe
Confidence 33456889999999999985 34555 555679988887765 89999999999999877766544 6789999998
Q ss_pred cCC
Q psy17798 101 NPG 103 (110)
Q Consensus 101 ~~~ 103 (110)
+.+
T Consensus 134 d~~ 136 (389)
T PRK05968 134 DGR 136 (389)
T ss_pred CCC
Confidence 764
No 190
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=98.27 E-value=7.8e-06 Score=59.45 Aligned_cols=74 Identities=15% Similarity=0.189 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCC---------------EEEEcCCCChhHHHHHH
Q psy17798 24 EKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKK---------------HVITTQTEHKCVLDSCR 88 (110)
Q Consensus 24 ~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~---------------~vl~~~~e~ps~~~~~~ 88 (110)
.+..+++++.+|+++|++ ++++|+|+|+|+++++.++. ++|| +|+++...++.+..++.
T Consensus 44 ~~~~~~~~~~~a~~~g~~--~~~~~~g~t~al~~al~al~----~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~ 117 (363)
T TIGR01437 44 KELVNKTGEYIANLLGVE--DAVIVSSASAGIAQSVAAVI----TRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVE 117 (363)
T ss_pred HHHHHHHHHHHHHhhCCC--eEEEEcCHHHHHHHHHHHHh----cCCCcchhhcccccccccceEEEECccchhcCCchH
Confidence 456788999999999874 78999999999999999986 6777 88886633333321222
Q ss_pred -HHHhCCcEEEEecCC
Q psy17798 89 -ILEGEGFNVLGSNPG 103 (110)
Q Consensus 89 -~l~~~g~~v~~v~~~ 103 (110)
.+...|+++++++.+
T Consensus 118 ~~~~~~g~~~v~v~~~ 133 (363)
T TIGR01437 118 TMVRLGGGKVVEAGYA 133 (363)
T ss_pred HHHHhcCCeEEEEcCC
Confidence 225578899888753
No 191
>KOG0634|consensus
Probab=98.27 E-value=1.7e-06 Score=63.68 Aligned_cols=82 Identities=16% Similarity=0.206 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHHHhC----CC--CC-cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHh
Q psy17798 20 GWESEKAVEDARQEIATLIN----CD--PK-EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEG 92 (110)
Q Consensus 20 ~~~~~~~~~~~R~~la~~l~----~~--~~-~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~ 92 (110)
.+....++.+++..+.++.+ .. .+ +|++|+|.|.++..+++.+. ++||+|++ |.+++..++..++.
T Consensus 95 QYg~s~G~peLl~fik~h~~~~ih~p~~~~wdiiit~G~t~~l~~~l~~~~----N~gd~vli---e~~ty~~AL~s~~a 167 (472)
T KOG0634|consen 95 QYGQSSGIPELLLFIKDHNRPTIHAPPYKNWDIIITNGNTDGLFKVLRTLI----NRGDHVLI---EEYTYPSALQSMEA 167 (472)
T ss_pred ccccccCcHHHHHHHHHhccccccCCCCCCceEEEecCCchHHHHHHHHhh----cCCCceEE---ecccchHHHHhccc
Confidence 34455678888888888765 22 13 79999999999999999998 89999995 66777778888888
Q ss_pred CCcEEEEecCCCCccc
Q psy17798 93 EGFNVLGSNPGQGGNF 108 (110)
Q Consensus 93 ~g~~v~~v~~~~~G~~ 108 (110)
.|+.++.|++|++|++
T Consensus 168 ~gv~~ipv~md~~Gi~ 183 (472)
T KOG0634|consen 168 LGVKIIPVKMDQDGID 183 (472)
T ss_pred cCceEEeccccCCCCC
Confidence 9999999999999975
No 192
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=98.26 E-value=6.4e-06 Score=59.72 Aligned_cols=70 Identities=13% Similarity=0.237 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecC
Q psy17798 24 EKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNP 102 (110)
Q Consensus 24 ~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~ 102 (110)
.+..+++++.++++++++ ++|++|+| ++++..+++++. ++||+|++++..||++...+. ..|+++..++.
T Consensus 86 ~~l~~~l~~~la~~~g~~-~~i~~tsG-~~a~~~~~~~l~----~~gd~vi~~~~~~~~~~~~~~---~~~~~~~~~~~ 155 (397)
T PRK06939 86 QDLHKELEEKLAKFLGTE-DAILYSSC-FDANGGLFETLL----GKEDAIISDALNHASIIDGVR---LCKAKRYRYAN 155 (397)
T ss_pred cHHHHHHHHHHHHHhCCC-cEEEEcCh-HHHHHHHHHHhC----CCCCEEEEEhhhhHHHHHHHH---hcCCceEEeCC
Confidence 345678889999999965 78888888 778888887775 899999999999999876553 34666666654
No 193
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=98.26 E-value=1.9e-05 Score=59.54 Aligned_cols=84 Identities=13% Similarity=0.129 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHH--HHHhHHhhccCCC----EEEEcCCCChhHHHHHHHHHhC
Q psy17798 20 GWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIA--VKGVARFYKEKKK----HVITTQTEHKCVLDSCRILEGE 93 (110)
Q Consensus 20 ~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i--~~~l~~~~~~~g~----~vl~~~~e~ps~~~~~~~l~~~ 93 (110)
+....+.+.++++.+++++|++...+..++|+++.+..+ ++.+. .++|| +|+++..+||++...+ +..
T Consensus 108 sqG~lel~~~~~~~la~l~G~~~~~l~~~~GA~a~~~~l~~~r~~~---~~~Gd~~~~~Vlv~~~~hp~~~~~~---~~~ 181 (481)
T PRK04366 108 VQGALELMYELQEWLKEITGMDAVTLQPAAGAHGELTGLLMIRAYH---EARGDTKRTEVIVPDSAHGTNPASA---AMA 181 (481)
T ss_pred hhHHHHHHHHHHHHHHHHhCCCceEEEeCcHHHHHHHHHHHHHHHh---hccCcCCCCEEEEcCCccHhHHHHH---HHc
Confidence 444567888999999999998754455555555554432 22222 24555 9999999999998764 457
Q ss_pred CcEEEEecCCCCcccc
Q psy17798 94 GFNVLGSNPGQGGNFL 109 (110)
Q Consensus 94 g~~v~~v~~~~~G~~~ 109 (110)
|++++.+|++++|.+|
T Consensus 182 G~~vv~v~~~~~~~~D 197 (481)
T PRK04366 182 GFKVVEIPSNEDGLVD 197 (481)
T ss_pred CCEEEEeecCCCCCcC
Confidence 9999999998777654
No 194
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=98.26 E-value=5.6e-06 Score=60.73 Aligned_cols=78 Identities=9% Similarity=0.081 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCcEEE
Q psy17798 20 GWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFNVL 98 (110)
Q Consensus 20 ~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~v~ 98 (110)
++.......++++.+|++.+.+. .+++ +++++|+.+++.++. ++||+|+++...|++....+..+ +..|++++
T Consensus 56 ~r~~~p~~~~Le~~lA~~~g~~~-~i~~-~sG~~Ai~~~l~all----~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi~~~ 129 (388)
T PRK07811 56 ARTGNPTRTALEEQLAALEGGAY-GRAF-SSGMAATDCLLRAVL----RPGDHIVIPNDAYGGTFRLIDKVFTRWGVEYT 129 (388)
T ss_pred cCCCCccHHHHHHHHHHHhCCCc-eEEe-CCHHHHHHHHHHHHh----CCCCEEEEcCCCchHHHHHHHHhCcCCCeEEE
Confidence 33344678899999999999864 3555 556899999999986 89999999999999776665544 55688888
Q ss_pred EecCC
Q psy17798 99 GSNPG 103 (110)
Q Consensus 99 ~v~~~ 103 (110)
.++..
T Consensus 130 ~~d~~ 134 (388)
T PRK07811 130 PVDLS 134 (388)
T ss_pred EeCCC
Confidence 87753
No 195
>TIGR01366 serC_3 phosphoserine aminotransferase, putative. This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.
Probab=98.23 E-value=1.1e-05 Score=58.62 Aligned_cols=80 Identities=20% Similarity=0.109 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCC-CcEEEe-CChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEE
Q psy17798 20 GWESEKAVEDARQEIATLINCDP-KEIIFT-SGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97 (110)
Q Consensus 20 ~~~~~~~~~~~R~~la~~l~~~~-~~i~~t-~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v 97 (110)
+....+.++++|+.+++++++++ .+|+|+ +|+|.+++.++.++. .+ +.++++..+|.+....+..+...+.++
T Consensus 36 ~~~f~~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~~l~----~~-~~l~i~~G~~~~~~~~~a~~~~~~~~~ 110 (361)
T TIGR01366 36 QAPVKNLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATFGLI----EK-KSLHLSFGEFSSKFAKAVKLAPWLGEP 110 (361)
T ss_pred ChHHHHHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHHhcc----cc-cccEEecCHHHHHHHHHHHhhhccCCc
Confidence 34567899999999999999954 589997 669999999999986 22 344555678877665555543222367
Q ss_pred EEecCCC
Q psy17798 98 LGSNPGQ 104 (110)
Q Consensus 98 ~~v~~~~ 104 (110)
..++.+.
T Consensus 111 ~~~~~~~ 117 (361)
T TIGR01366 111 IIVTADP 117 (361)
T ss_pred eEEecCC
Confidence 7776654
No 196
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.21 E-value=8.2e-06 Score=60.76 Aligned_cols=78 Identities=12% Similarity=0.081 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHH-HHhCCcEEE
Q psy17798 20 GWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRI-LEGEGFNVL 98 (110)
Q Consensus 20 ~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~-l~~~g~~v~ 98 (110)
++...+....+.+.+|++.|+ +..++++|++.|+..++.++. ++||+|+++...|++....+.. ++..|++++
T Consensus 59 ~r~~~p~~~~Le~~lA~leg~--~~al~~~sG~~Ai~~al~~ll----~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~ 132 (431)
T PRK08248 59 TRIMNPTTDVFEKRIAALEGG--IGALAVSSGQAAITYSILNIA----SAGDEIVSSSSLYGGTYNLFAHTLPKLGITVK 132 (431)
T ss_pred ECCCCchHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHHh----CCCCEEEEccCchhhHHHHHHHHHHhCCEEEE
Confidence 344445677889999999985 467889999999999988876 8999999999999887776655 477899999
Q ss_pred EecCC
Q psy17798 99 GSNPG 103 (110)
Q Consensus 99 ~v~~~ 103 (110)
+++++
T Consensus 133 ~vd~~ 137 (431)
T PRK08248 133 FVDPS 137 (431)
T ss_pred EECCC
Confidence 99874
No 197
>KOG0257|consensus
Probab=98.20 E-value=8.2e-06 Score=59.86 Aligned_cols=77 Identities=17% Similarity=0.201 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCC--C-CCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcE
Q psy17798 20 GWESEKAVEDARQEIATLINC--D-PKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFN 96 (110)
Q Consensus 20 ~~~~~~~~~~~R~~la~~l~~--~-~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~ 96 (110)
++...+....+++.++.++|. + .+||++|.|+.+++...+.++. .+||+|++-+.-++++.... +-.|..
T Consensus 68 ~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~----~~GDeVii~eP~fd~Y~~~~---~maG~t 140 (420)
T KOG0257|consen 68 GYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLL----NPGDEVIVFEPFFDCYIPQV---VMAGGT 140 (420)
T ss_pred cCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHHc----CCCCEEEEecCcchhhhhHH---hhcCCc
Confidence 444455566666666776663 3 5789999999999999998887 89999999988888887655 346888
Q ss_pred EEEecCC
Q psy17798 97 VLGSNPG 103 (110)
Q Consensus 97 v~~v~~~ 103 (110)
.++||+.
T Consensus 141 pv~v~~~ 147 (420)
T KOG0257|consen 141 PVFVPLK 147 (420)
T ss_pred ceeeccc
Confidence 8888887
No 198
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=98.20 E-value=1.1e-05 Score=59.48 Aligned_cols=78 Identities=8% Similarity=0.072 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHH-HHhCCcEEE
Q psy17798 20 GWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRI-LEGEGFNVL 98 (110)
Q Consensus 20 ~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~-l~~~g~~v~ 98 (110)
++......+++.+.+|++.+++ +.+++++++.|+..++.++. ++||+|+++...|++....+.. ++..|++++
T Consensus 65 ~r~~~p~~~~le~~lA~l~g~~--~al~~~sG~~Ai~~~l~all----~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~v~ 138 (403)
T PRK07810 65 SRYGNPTVSMFEERLRLIEGAE--ACFATASGMSAVFTALGALL----GAGDRLVAARSLFGSCFVVCNEILPRWGVETV 138 (403)
T ss_pred eCCCCchHHHHHHHHHHHhCCC--cEEEECChHHHHHHHHHHHh----CCCCEEEEccCCcchHHHHHHHHHHHcCcEEE
Confidence 3334456788999999999964 77888888899988888876 8999999998888666655554 467899999
Q ss_pred EecCC
Q psy17798 99 GSNPG 103 (110)
Q Consensus 99 ~v~~~ 103 (110)
+++.+
T Consensus 139 ~vd~~ 143 (403)
T PRK07810 139 FVDGE 143 (403)
T ss_pred EECCC
Confidence 99764
No 199
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=98.19 E-value=1.2e-05 Score=57.43 Aligned_cols=69 Identities=17% Similarity=0.289 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecC
Q psy17798 25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNP 102 (110)
Q Consensus 25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~ 102 (110)
+..+++|+.++++++. +++|++++|+++.+ .++.++. ++||+|+++..+|+++...+ +..|++++.++.
T Consensus 61 ~~~~~l~~~la~~~~~-~~~i~~~~G~~~~~-~~l~~~~----~~gd~v~~~~~~~~~~~~~~---~~~g~~~~~~~~ 129 (360)
T TIGR00858 61 PLHEELEEELAEWKGT-EAALLFSSGYLANV-GVISALV----GKGDLILSDALNHASLIDGC---RLSGARVRRYRH 129 (360)
T ss_pred HHHHHHHHHHHHHhCC-CCEEEECchHHHHH-HHHHHhC----CCCCEEEEEccccHHHHHHH---HhcCCceEEecC
Confidence 4577899999999985 57888888865544 4666654 79999999999999887655 346888887764
No 200
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=98.17 E-value=9.9e-06 Score=58.93 Aligned_cols=80 Identities=11% Similarity=0.019 Sum_probs=61.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCc
Q psy17798 17 HAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGF 95 (110)
Q Consensus 17 ~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~ 95 (110)
|..++.......++++.+|++.|++. .++++|+++|+..++ ++. ++||+||++...|++....+... +..|+
T Consensus 44 ~~y~r~~~pt~~~le~~la~l~g~~~--~~~~~sG~~ai~~~~-~ll----~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~ 116 (366)
T PRK08247 44 FDYSRTGNPTRGVLEQAIADLEGGDQ--GFACSSGMAAIQLVM-SLF----RSGDELIVSSDLYGGTYRLFEEHWKKWNV 116 (366)
T ss_pred ccccCCCCchHHHHHHHHHHHhCCCc--EEEEcCHHHHHHHHH-HHh----CCCCEEEEecCCcCcHHHHHHHHhhccCc
Confidence 44555555678899999999999865 366777788998765 444 79999999999998876655543 66899
Q ss_pred EEEEecCC
Q psy17798 96 NVLGSNPG 103 (110)
Q Consensus 96 ~v~~v~~~ 103 (110)
++++++.+
T Consensus 117 ~v~~vd~~ 124 (366)
T PRK08247 117 RFVYVNTA 124 (366)
T ss_pred eEEEECCC
Confidence 99998864
No 201
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=98.15 E-value=2.8e-05 Score=56.98 Aligned_cols=76 Identities=14% Similarity=0.045 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCC
Q psy17798 26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQG 105 (110)
Q Consensus 26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~ 105 (110)
...++-+.+|+++|+. ..+.++|+|.|+.++++++. ..+||+||++...+.+...+.. ..|+++++|.+|++
T Consensus 35 ~v~~FE~~~ae~~G~k--~ava~~sgT~AL~laL~al~---ig~GDeVI~ps~TfvATan~i~---~~Ga~PVFvDid~~ 106 (374)
T COG0399 35 FVRRFEQAFAEYLGVK--YAVAVSSGTAALHLALLALA---IGPGDEVIVPSFTFVATANAVL---LVGAKPVFVDIDPD 106 (374)
T ss_pred HHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHhcC---CCCCCEEEecCCchHHHHHHHH---HcCCeEEEEecCCc
Confidence 4556677899999874 68999999999999999776 3899999999999988776653 47999999999964
Q ss_pred -cccc
Q psy17798 106 -GNFL 109 (110)
Q Consensus 106 -G~~~ 109 (110)
+.+|
T Consensus 107 T~nid 111 (374)
T COG0399 107 TLNID 111 (374)
T ss_pred ccCCC
Confidence 6555
No 202
>PRK05967 cystathionine beta-lyase; Provisional
Probab=98.13 E-value=2.2e-05 Score=57.98 Aligned_cols=78 Identities=14% Similarity=0.177 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHH-HHhCCcEEE
Q psy17798 20 GWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRI-LEGEGFNVL 98 (110)
Q Consensus 20 ~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~-l~~~g~~v~ 98 (110)
++...+..+.+++.++.+-+. ++. ++++++++|++.++.++. ++||+||++...|+++...+.. ++..|++++
T Consensus 59 sR~gnPt~~~Le~~la~le~~-~~~-v~~sSG~aAi~~~l~all----~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~ 132 (395)
T PRK05967 59 GTRGTPTTDALCKAIDALEGS-AGT-ILVPSGLAAVTVPFLGFL----SPGDHALIVDSVYYPTRHFCDTMLKRLGVEVE 132 (395)
T ss_pred CCCCChHHHHHHHHHHHHhCC-CCE-EEECcHHHHHHHHHHHhc----CCCCEEEEccCCcHHHHHHHHHHHHhcCeEEE
Confidence 344455666777777766543 334 555557899999998886 8999999999999988766543 477899999
Q ss_pred EecCC
Q psy17798 99 GSNPG 103 (110)
Q Consensus 99 ~v~~~ 103 (110)
+++.+
T Consensus 133 ~vd~~ 137 (395)
T PRK05967 133 YYDPE 137 (395)
T ss_pred EeCCC
Confidence 98764
No 203
>PLN02242 methionine gamma-lyase
Probab=98.13 E-value=1.8e-05 Score=58.66 Aligned_cols=81 Identities=10% Similarity=0.027 Sum_probs=63.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH--HhCC
Q psy17798 17 HAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL--EGEG 94 (110)
Q Consensus 17 ~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l--~~~g 94 (110)
|..++...+..+++++.+|++.|+. .+++++|+++|+..++.++. ++||+|+++...|+.+...+... +..|
T Consensus 68 ~~Y~r~~~Pt~~~LE~~lA~l~g~~--~~l~~~sG~~Ai~~al~al~----~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G 141 (418)
T PLN02242 68 YIYSRHFNPTVLNLGRQMAALEGTE--AAYCTASGMSAISSVLLQLC----SSGGHVVASNTLYGGTHALLAHFLPRKCN 141 (418)
T ss_pred ccccCCCChhHHHHHHHHHHHhCCC--eEEEEccHHHHHHHHHHHHh----CCCCEEEEcCCcHHHHHHHHHHhhhhccC
Confidence 3445545678889999999999874 46789999999999999887 89999999888888776655433 3378
Q ss_pred cEEEEecCC
Q psy17798 95 FNVLGSNPG 103 (110)
Q Consensus 95 ~~v~~v~~~ 103 (110)
++++.++.+
T Consensus 142 ~~~~~~d~~ 150 (418)
T PLN02242 142 ITTTFVDIT 150 (418)
T ss_pred ceEEEcCCC
Confidence 888887764
No 204
>PRK06767 methionine gamma-lyase; Provisional
Probab=98.10 E-value=2.2e-05 Score=57.55 Aligned_cols=79 Identities=13% Similarity=0.114 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCcEE
Q psy17798 19 YGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFNV 97 (110)
Q Consensus 19 ~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~v 97 (110)
.++...+...++++.+|++.|++ +.| ++++++.++..++.++. ++||+||++...|++....+..+ +..|+++
T Consensus 55 y~r~~~pt~~~Le~~lA~l~G~~-~al-~~~sG~~Ai~~~l~al~----~~Gd~Vv~~~~~y~~~~~~~~~~~~~~gi~~ 128 (386)
T PRK06767 55 YSRLGNPTVKLFEERMAVLEGGE-EAL-AFGSGMAAISATLIGFL----KAGDHIICSNGLYGCTYGFLEVLEEKFMITH 128 (386)
T ss_pred ccCCCCcchHHHHHHHHHHhCCC-cEE-EECCHHHHHHHHHHHHh----CCCCEEEEcCCcHHHHHHHHHHHHhhcCeEE
Confidence 33334456788999999999963 444 45555678988888876 89999999999998887776665 5568888
Q ss_pred EEecCC
Q psy17798 98 LGSNPG 103 (110)
Q Consensus 98 ~~v~~~ 103 (110)
..++..
T Consensus 129 ~~~~~~ 134 (386)
T PRK06767 129 SFCDME 134 (386)
T ss_pred EEeCCC
Confidence 777653
No 205
>PRK06434 cystathionine gamma-lyase; Validated
Probab=98.10 E-value=2.4e-05 Score=57.49 Aligned_cols=79 Identities=14% Similarity=0.110 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHH-HHHHhCCcEEE
Q psy17798 20 GWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSC-RILEGEGFNVL 98 (110)
Q Consensus 20 ~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~-~~l~~~g~~v~ 98 (110)
++...+..+++-+.+|++.+++ ..+.+++++.|+++++.++. ++||+||++...|......+ ..+...|++++
T Consensus 59 ~r~~~P~~~~lE~~la~leg~~--~av~~sSG~aAi~~al~all----~~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi~v~ 132 (384)
T PRK06434 59 TRWGNPTVQAFEEKYAVLENAE--HALSFSSGMGAITSAILSLI----KKGKRILSISDLYGQTFYFFNKVLKTLGIHVD 132 (384)
T ss_pred eCCCChhHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHHh----CCCCEEEEecCccchHHHHHHHHHHhcCcEEE
Confidence 3334566777888899998874 46777777899999999876 89999999766555555444 33467899999
Q ss_pred EecCCC
Q psy17798 99 GSNPGQ 104 (110)
Q Consensus 99 ~v~~~~ 104 (110)
++++++
T Consensus 133 fvd~~~ 138 (384)
T PRK06434 133 YIDTDR 138 (384)
T ss_pred EECCCC
Confidence 999875
No 206
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.10 E-value=3.4e-05 Score=57.59 Aligned_cols=77 Identities=14% Similarity=0.142 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHH-HHhCCcEE
Q psy17798 19 YGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRI-LEGEGFNV 97 (110)
Q Consensus 19 ~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~-l~~~g~~v 97 (110)
.++...+..+++.+.+|++.|++. .+++++++.|+..++.++. ++||+||++..+|.+....+.. +++.|+++
T Consensus 63 Ysr~~~p~~~~Le~~lA~l~g~~~--av~~sSG~aAi~~al~all----~~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v 136 (436)
T PRK07812 63 YTRIMNPTQDVVEQRIAALEGGVA--ALLLASGQAAETFAILNLA----GAGDHIVSSPRLYGGTYNLFHYTLPKLGIEV 136 (436)
T ss_pred ccCCCCchHHHHHHHHHHHhCCCe--EEEEccHHHHHHHHHHHHh----CCCCEEEEeCCcchHHHHHHHHHhhcCeEEE
Confidence 344344567789999999998753 6777788889999998876 8999999999999888766655 46689999
Q ss_pred EEec
Q psy17798 98 LGSN 101 (110)
Q Consensus 98 ~~v~ 101 (110)
+.++
T Consensus 137 ~~vd 140 (436)
T PRK07812 137 SFVE 140 (436)
T ss_pred EEEC
Confidence 9885
No 207
>KOG0256|consensus
Probab=98.10 E-value=5.1e-06 Score=61.00 Aligned_cols=78 Identities=18% Similarity=0.265 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHhC--------CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCC
Q psy17798 23 SEKAVEDARQEIATLIN--------CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEG 94 (110)
Q Consensus 23 ~~~~~~~~R~~la~~l~--------~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g 94 (110)
...++...|+++|+++. -+|+++++|.|+|.++.++...|. .|||..+++..=||++..-.+ =+.|
T Consensus 119 dy~Gl~~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcLa----dpgdafLvPtPyY~gfdrdl~--~rTg 192 (471)
T KOG0256|consen 119 DYHGLPSFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCLA----DPGDAFLVPTPYYPGFDRDLR--WRTG 192 (471)
T ss_pred cccCchHHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHhc----CCCceeeecCCCCCcccccce--eccC
Confidence 34678899999999983 379999999999999999999988 899999999888888754332 1469
Q ss_pred cEEEEecCCC-Cc
Q psy17798 95 FNVLGSNPGQ-GG 106 (110)
Q Consensus 95 ~~v~~v~~~~-~G 106 (110)
+++++|.+++ +|
T Consensus 193 veivpv~c~Ss~~ 205 (471)
T KOG0256|consen 193 VEIVPVHCSSSNG 205 (471)
T ss_pred ceEEEEEeecCCC
Confidence 9999998875 44
No 208
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=98.08 E-value=3e-05 Score=55.93 Aligned_cols=71 Identities=18% Similarity=0.273 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798 24 EKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG 103 (110)
Q Consensus 24 ~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~ 103 (110)
....+++++.++++++. ++.|++++ +++++..++.++. ++||+|++++.+|+++...+. ..|++++.+|..
T Consensus 83 ~~~~~~l~~~la~~~~~-~~~i~~~~-g~~~~~~~l~~~~----~~gd~V~~~~~~~~~~~~~~~---~~g~~~~~~~~~ 153 (385)
T PRK05958 83 SPAHEALEEELAEWFGA-ERALLFSS-GYAANLAVLTALA----GKGDLIVSDKLNHASLIDGAR---LSRARVRRYPHN 153 (385)
T ss_pred cHHHHHHHHHHHHHhCC-CcEEEECc-HHHHHHHHHHHhC----CCCCEEEEeCccCHHHHHHHH---hcCCceEEeCCC
Confidence 34578899999999984 45555555 5566655666654 899999999999999886653 368888888753
No 209
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.08 E-value=2.3e-05 Score=58.31 Aligned_cols=74 Identities=7% Similarity=0.067 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCcEEEEecC
Q psy17798 24 EKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFNVLGSNP 102 (110)
Q Consensus 24 ~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~v~~v~~ 102 (110)
......+.+.+|++.+.+ ..+++++++.|+.+++.++. ++||+||++...|++....+... +..|++++++++
T Consensus 62 ~p~~~~le~~lA~l~g~~--~al~~~SG~~Ai~~al~all----~pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~~vd~ 135 (427)
T PRK05994 62 NPTNAVLEERVAALEGGT--AALAVASGHAAQFLVFHTLL----QPGDEFIAARKLYGGSINQFGHAFKSFGWQVRWADA 135 (427)
T ss_pred CccHHHHHHHHHHHhCCC--cEEEEcCHHHHHHHHHHHHh----CCCCEEEEecCcchhHHHHHHHHHHhcCcEEEEECC
Confidence 445678899999999875 37788899999999998876 89999999999999887766554 678999999886
Q ss_pred C
Q psy17798 103 G 103 (110)
Q Consensus 103 ~ 103 (110)
+
T Consensus 136 ~ 136 (427)
T PRK05994 136 D 136 (427)
T ss_pred C
Confidence 4
No 210
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=98.07 E-value=2e-05 Score=58.03 Aligned_cols=76 Identities=12% Similarity=0.073 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCcEEE
Q psy17798 20 GWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFNVL 98 (110)
Q Consensus 20 ~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~v~ 98 (110)
++...+...++++.+|+++|+++. +++++++.++..++.++. ++||+|+++...|+++...+..+ +..|++++
T Consensus 60 ~r~~~p~~~~Le~~lA~l~G~~~~--~~~~sG~~Ai~~~l~~~l----~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~ 133 (398)
T PRK07504 60 SRYSNPTVDMFEKRMCALEGAEDA--RATASGMAAVTAAILCQV----KAGDHVVAARALFGSCRYVVETLLPRYGIEST 133 (398)
T ss_pred ecCCCchHHHHHHHHHHHhCCCee--eEecCHHHHHHHHHHHHh----CCCCEEEEcCCchhHHHHHHHHHHhhcCeEEE
Confidence 333345678999999999998754 346677888877776655 89999999999999887776554 56789888
Q ss_pred Eec
Q psy17798 99 GSN 101 (110)
Q Consensus 99 ~v~ 101 (110)
.++
T Consensus 134 ~vd 136 (398)
T PRK07504 134 LVD 136 (398)
T ss_pred EEC
Confidence 876
No 211
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=98.07 E-value=4.5e-05 Score=58.15 Aligned_cols=89 Identities=12% Similarity=0.086 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCC-----------C--CcEEEeCChHHHHHHHHHHhHHhhcc----------------
Q psy17798 18 AYGWESEKAVEDARQEIATLINCD-----------P--KEIIFTSGATESNNIAVKGVARFYKE---------------- 68 (110)
Q Consensus 18 ~~~~~~~~~~~~~R~~la~~l~~~-----------~--~~i~~t~gat~a~~~i~~~l~~~~~~---------------- 68 (110)
..+...+..-.++-+.++++++.. + ..-+||+|+|+|+-..+.+.....+.
T Consensus 122 ~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~ 201 (522)
T TIGR03799 122 ETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAA 201 (522)
T ss_pred ecCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccchhh
Confidence 334445556666777777777421 1 23689999999998877654322111
Q ss_pred ------CCCEEEEcCCCChhHHHHHHHHHhCCc---EEEEecCCCCcccc
Q psy17798 69 ------KKKHVITTQTEHKCVLDSCRILEGEGF---NVLGSNPGQGGNFL 109 (110)
Q Consensus 69 ------~g~~vl~~~~e~ps~~~~~~~l~~~g~---~v~~v~~~~~G~~~ 109 (110)
++..|+++..+|+|+..+...+ |+ +++.||+|++|.+|
T Consensus 202 ~~~~~~~~~~v~~S~~~H~S~~kaa~~l---glg~~~v~~vp~d~~g~~d 248 (522)
T TIGR03799 202 LKHYGYDGLAILVSERGHYSLGKAADVL---GIGRDNLIAIKTDANNRID 248 (522)
T ss_pred hhhccCCceEEEECCCchHHHHHHHHHc---CCCcccEEEEEeCCCCcCC
Confidence 2457999999999998766554 55 79999999999876
No 212
>PRK09275 aspartate aminotransferase; Provisional
Probab=98.05 E-value=3.5e-05 Score=58.76 Aligned_cols=79 Identities=9% Similarity=0.063 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHH-HhC----C---C--CCcEEEeCChHHHHHHHHHHhHH-hhccCCCEEEEcCCCChhHHHHHHHHHhC
Q psy17798 25 KAVEDARQEIAT-LIN----C---D--PKEIIFTSGATESNNIAVKGVAR-FYKEKKKHVITTQTEHKCVLDSCRILEGE 93 (110)
Q Consensus 25 ~~~~~~R~~la~-~l~----~---~--~~~i~~t~gat~a~~~i~~~l~~-~~~~~g~~vl~~~~e~ps~~~~~~~l~~~ 93 (110)
.++.++|+++++ ++. . . +++|++|+|+++|+..++.++.. ..+++||+|++...-|+.+..... +...
T Consensus 134 ~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~~-l~g~ 212 (527)
T PRK09275 134 DRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCYIFDSLKENGLLKAGDKIALMTPIFTPYLEIPE-LPRY 212 (527)
T ss_pred CCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhhhhcCCCCCEEEEeCCChHHHHHHHH-HcCC
Confidence 455688888887 321 1 2 24899999999999999987421 113899999998877777654432 2234
Q ss_pred CcEEEEecCCC
Q psy17798 94 GFNVLGSNPGQ 104 (110)
Q Consensus 94 g~~v~~v~~~~ 104 (110)
|++++.++.++
T Consensus 213 ~~~~v~v~~~~ 223 (527)
T PRK09275 213 DLEVVHINADE 223 (527)
T ss_pred CeEEEEeecCc
Confidence 66777777654
No 213
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=98.03 E-value=3.7e-05 Score=57.35 Aligned_cols=70 Identities=17% Similarity=0.162 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798 25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ 104 (110)
Q Consensus 25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~ 104 (110)
..+.++|++++++++. +++++|+|++.|+.+++.++. ++||.| +++.-++++.... ...|++++.+++++
T Consensus 53 ~g~~~Leeaia~~~g~--~~vv~t~~Gt~Al~la~~al~----~pGD~V-~~~~~f~~~~~~i---~~~Ga~pv~v~i~~ 122 (431)
T cd00617 53 KSFYDLEDAVQDLFGF--KHIIPTHQGRGAENILFSILL----KPGRTV-PSNMHFDTTRGHI---EANGAVPVDLVIDE 122 (431)
T ss_pred CCHHHHHHHHHHHHCC--CeEEEcCCHHHHHHHHHHHhC----CCCCEE-ccCCcccchHHHH---HhCCCEeEEEeccc
Confidence 3578999999999987 479999999999999999886 899987 4665566654433 45799999999874
No 214
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=98.02 E-value=3.8e-05 Score=56.31 Aligned_cols=80 Identities=10% Similarity=0.047 Sum_probs=59.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCc
Q psy17798 17 HAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGF 95 (110)
Q Consensus 17 ~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~ 95 (110)
|..++...+....+++.+|++.|+.. .+++ ++++.|+..++. +. ++||+|++++..|++....+... +..|+
T Consensus 42 ~~y~r~~~p~~~~Le~~la~l~g~~~-al~~-~SG~~Al~~~l~-~l----~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi 114 (380)
T PRK06176 42 YEYSRSGNPTRFALEELIADLEGGVK-GFAF-ASGLAGIHAVFS-LF----QSGDHVLLGDDVYGGTFRLFDKVLVKNGL 114 (380)
T ss_pred CcccCCCChhHHHHHHHHHHHhCCCC-EEEE-CCHHHHHHHHHH-Hc----CCCCEEEEcCCChhHHHHHHHHHHHhcCe
Confidence 45555556678899999999998643 3555 555668886664 43 79999999999999887777654 67899
Q ss_pred EEEEecCC
Q psy17798 96 NVLGSNPG 103 (110)
Q Consensus 96 ~v~~v~~~ 103 (110)
+++.++.+
T Consensus 115 ~v~~vd~~ 122 (380)
T PRK06176 115 SCTIIDTS 122 (380)
T ss_pred EEEEcCCC
Confidence 99988764
No 215
>PRK04311 selenocysteine synthase; Provisional
Probab=98.01 E-value=6.5e-05 Score=56.54 Aligned_cols=71 Identities=10% Similarity=0.152 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhH----HHHHHHHHhCCcEEEEe
Q psy17798 25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCV----LDSCRILEGEGFNVLGS 100 (110)
Q Consensus 25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~----~~~~~~l~~~g~~v~~v 100 (110)
..++.+++.+|+++|+. ..++++|++.|+++++.++ .+|++||++..||+++ ..+ ..++..|++++++
T Consensus 127 ~r~~~~e~~lA~l~Gae--~a~vv~sgtaAl~l~l~~l-----~~GdeVIvs~~e~~~~ggs~~i~-~~~~~~G~~l~~v 198 (464)
T PRK04311 127 SRDRALAALLCALTGAE--DALVVNNNAAAVLLALNAL-----AAGKEVIVSRGELVEIGGAFRIP-DVMRQAGARLVEV 198 (464)
T ss_pred hHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHHh-----CCCCEEEEcchhhhhcCcchhhH-HHHHHCCcEEEEE
Confidence 45789999999999985 5778888889999988764 5899999999888743 222 2346789999999
Q ss_pred cCC
Q psy17798 101 NPG 103 (110)
Q Consensus 101 ~~~ 103 (110)
+.+
T Consensus 199 ~~~ 201 (464)
T PRK04311 199 GTT 201 (464)
T ss_pred CCC
Confidence 864
No 216
>PRK07671 cystathionine beta-lyase; Provisional
Probab=98.00 E-value=4.3e-05 Score=55.94 Aligned_cols=80 Identities=15% Similarity=0.071 Sum_probs=58.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHH-HHhCCc
Q psy17798 17 HAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRI-LEGEGF 95 (110)
Q Consensus 17 ~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~-l~~~g~ 95 (110)
+..++...+...++++.+|++.|++. .+++.+ ++.++..++ .+. ++||+|+++...|++....+.. ++..|+
T Consensus 42 ~~y~r~~~p~~~~Le~~lA~l~g~~~-~~~~~s-G~aai~~~~-~~l----~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~ 114 (377)
T PRK07671 42 YEYSRTGNPTRAALEELIAVLEGGHA-GFAFGS-GMAAITAVM-MLF----SSGDHVILTDDVYGGTYRVMTKVLNRFGI 114 (377)
T ss_pred CCcCCCCChHHHHHHHHHHHHhCCCc-eEEeCC-HHHHHHHHH-HHh----CCCCEEEECCCccchHHHHHHHHHhcCCe
Confidence 44555556778899999999999753 455445 556777654 343 7999999999999866665554 367899
Q ss_pred EEEEecCC
Q psy17798 96 NVLGSNPG 103 (110)
Q Consensus 96 ~v~~v~~~ 103 (110)
+++.++.+
T Consensus 115 ~v~~v~~~ 122 (377)
T PRK07671 115 EHTFVDTS 122 (377)
T ss_pred EEEEECCC
Confidence 99998754
No 217
>PRK07049 methionine gamma-lyase; Validated
Probab=97.98 E-value=4.6e-05 Score=56.70 Aligned_cols=76 Identities=8% Similarity=0.008 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHH-HHhCCcEEE
Q psy17798 20 GWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRI-LEGEGFNVL 98 (110)
Q Consensus 20 ~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~-l~~~g~~v~ 98 (110)
++........+++.||++.++ +++++++|++.|+..++.++. ++||+|+++..-|+.+...... ++..|++++
T Consensus 78 ~R~~~Pt~~~Le~~lA~leg~--~~~iv~~sG~~Ai~~~l~al~----~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi~~v 151 (427)
T PRK07049 78 SRFNHPNSEIVEDRLAVYEGA--ESAALFSSGMSAIATTLLAFV----RPGDVILHSQPLYGGTETLLAKTFRNFGVGAV 151 (427)
T ss_pred cCCCCcCHHHHHHHHHHHhCC--CcEEEEccHHHHHHHHHHHHh----CCCCEEEEcCCCcccHHHHHHHHHHhcCcEEE
Confidence 444445677899999999985 468888888899999998887 8999999988888887666443 466799866
Q ss_pred Eec
Q psy17798 99 GSN 101 (110)
Q Consensus 99 ~v~ 101 (110)
.++
T Consensus 152 ~~~ 154 (427)
T PRK07049 152 GFA 154 (427)
T ss_pred EEe
Confidence 665
No 218
>PRK10534 L-threonine aldolase; Provisional
Probab=97.97 E-value=4.2e-05 Score=54.49 Aligned_cols=80 Identities=15% Similarity=0.187 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798 24 EKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG 103 (110)
Q Consensus 24 ~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~ 103 (110)
.....++|+++|+++|.++. ++++|+++++.+.+.++. .+||+|+++...|.............+++++.++++
T Consensus 33 ~~~~~~L~~~la~~~g~~~~--~v~~~g~~a~~~~l~~~~----~~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (333)
T PRK10534 33 DPTVNALQDYAAELSGKEAA--LFLPTGTQANLVALLSHC----ERGEEYIVGQAAHNYLYEAGGAAVLGSIQPQPIDAA 106 (333)
T ss_pred CHHHHHHHHHHHHHhCCCeE--EEeCchHHHHHHHHHHhc----CCCCeeEEechhhhhHhcCCchHHhcCceEEeecCC
Confidence 34678999999999998654 577777888777777665 789999976555543221110111123677888877
Q ss_pred CCcccc
Q psy17798 104 QGGNFL 109 (110)
Q Consensus 104 ~~G~~~ 109 (110)
+++.+|
T Consensus 107 ~~~~~d 112 (333)
T PRK10534 107 ADGTLP 112 (333)
T ss_pred CCCCCC
Confidence 665543
No 219
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=97.96 E-value=0.00016 Score=54.08 Aligned_cols=73 Identities=18% Similarity=0.196 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHH-HHhCCcEEEEecC
Q psy17798 24 EKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRI-LEGEGFNVLGSNP 102 (110)
Q Consensus 24 ~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~-l~~~g~~v~~v~~ 102 (110)
.+....+.+.+|++.++. ..+.++|++.|+.+++.++. ++||+||++...|.+....... +...|++++++..
T Consensus 60 nPtv~~lE~~la~leg~~--~av~~~SG~aAi~~al~all----~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~ 133 (432)
T PRK06702 60 NPTLAAFEQKLAELEGGV--GAVATASGQAAIMLAVLNIC----SSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNP 133 (432)
T ss_pred CcHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHhc----CCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECC
Confidence 356778889999998874 47889999999999998876 8999999999888877766555 4778999999875
No 220
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=97.95 E-value=0.00018 Score=52.68 Aligned_cols=89 Identities=19% Similarity=0.181 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCCC-------CcEEEeCChHHHHHHHHHHhHHhhc----c------CCCEEEEcCCCC
Q psy17798 18 AYGWESEKAVEDARQEIATLINCDP-------KEIIFTSGATESNNIAVKGVARFYK----E------KKKHVITTQTEH 80 (110)
Q Consensus 18 ~~~~~~~~~~~~~R~~la~~l~~~~-------~~i~~t~gat~a~~~i~~~l~~~~~----~------~g~~vl~~~~e~ 80 (110)
..+........++-+.+++++|.+. ..=+||+|+|+++...+.+...... . +.-.|++++..|
T Consensus 72 ~~~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH 151 (373)
T PF00282_consen 72 EASPAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAH 151 (373)
T ss_dssp TTSHHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-
T ss_pred ccccccccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccc
Confidence 3344566677789999999999762 3478999999999887765532211 1 223788999899
Q ss_pred hhHHHHHHHHHhCCcEEEEecCCCCcccc
Q psy17798 81 KCVLDSCRILEGEGFNVLGSNPGQGGNFL 109 (110)
Q Consensus 81 ps~~~~~~~l~~~g~~v~~v~~~~~G~~~ 109 (110)
.|+..+... .|+.++.||+|++|.+|
T Consensus 152 ~S~~Kaa~~---lGlg~~~I~~~~~~~md 177 (373)
T PF00282_consen 152 YSIEKAARI---LGLGVRKIPTDEDGRMD 177 (373)
T ss_dssp THHHHHHHH---TTSEEEEE-BBTTSSB-
T ss_pred cHHHHhcce---eeeEEEEecCCcchhhh
Confidence 999877755 58889999999988765
No 221
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=97.94 E-value=0.00011 Score=56.04 Aligned_cols=60 Identities=12% Similarity=0.106 Sum_probs=44.9
Q ss_pred cEEEeCChHHHHHHHHHHhHH-hhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798 44 EIIFTSGATESNNIAVKGVAR-FYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ 104 (110)
Q Consensus 44 ~i~~t~gat~a~~~i~~~l~~-~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~ 104 (110)
+|++|+|+++|+..++.++.. ..+.+||+|++...-||.+..... +...|++++.++.++
T Consensus 157 ~V~it~Gat~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~-l~~~g~~vv~i~~~~ 217 (521)
T TIGR03801 157 DLFAVEGGTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPE-LPRYDFEVVRIKADE 217 (521)
T ss_pred eEEEeCCHHHHHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHH-HhcCCcEEEEeeccc
Confidence 899999999999999887421 113899999988877777665432 234578888888764
No 222
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=97.93 E-value=0.00013 Score=53.56 Aligned_cols=71 Identities=17% Similarity=0.230 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798 24 EKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG 103 (110)
Q Consensus 24 ~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~ 103 (110)
.....++++.+|++++.+ +.++|++|.+... .++.++. ++||+|++++..|+++...+ .+ .++++++++.+
T Consensus 42 ~~~~~~LE~~lA~~~g~e-~al~~~sG~~a~~-~~i~~l~----~~GD~Vl~~~~~h~s~~~~~-~l--~~~~~~~~~~~ 112 (392)
T PLN03227 42 IDAHLELEQCMAEFLGTE-SAILYSDGASTTS-STVAAFA----KRGDLLVVDRGVNEALLVGV-SL--SRANVRWFRHN 112 (392)
T ss_pred hHHHHHHHHHHHHHhCCC-cEEEecCcHHHHH-HHHHHhC----CCCCEEEEeccccHHHHHHH-HH--cCCeEEEeCCC
Confidence 347889999999999986 7788988888777 4555555 89999999999999987665 22 35677766654
No 223
>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional
Probab=97.92 E-value=8.7e-05 Score=54.03 Aligned_cols=86 Identities=14% Similarity=0.093 Sum_probs=53.9
Q ss_pred CCCCcCChHHHHH---HHHHHHHHHHHHHHhCC-CCCcEEEe-CChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHH
Q psy17798 11 NPHSRTHAYGWES---EKAVEDARQEIATLINC-DPKEIIFT-SGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLD 85 (110)
Q Consensus 11 n~~~~~~~~~~~~---~~~~~~~R~~la~~l~~-~~~~i~~t-~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~ 85 (110)
|.++|.+..+... .+.++++|+.+++++++ ++.+|+|+ +++|.++..++..+. .+|+++++. ....+-.
T Consensus 31 ~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~~~nl~----~~g~~~l~i--~~G~fg~ 104 (360)
T PRK05355 31 GSGMSVMEISHRSKEFEAVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMVPMNLL----GGGKKADYV--DTGSWSK 104 (360)
T ss_pred cCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHHHHhcC----CCCCeEEEE--ECCHHHH
Confidence 5555555444433 48999999999999998 34567777 556667777777776 677665543 2233333
Q ss_pred HHHHH-HhCCcEEEEecCC
Q psy17798 86 SCRIL-EGEGFNVLGSNPG 103 (110)
Q Consensus 86 ~~~~l-~~~g~~v~~v~~~ 103 (110)
-|..+ ++.|.. ..++.+
T Consensus 105 r~~~~a~~~g~~-~~~~~~ 122 (360)
T PRK05355 105 KAIKEAKKYGEV-NVAASS 122 (360)
T ss_pred HHHHHHHHhCCc-eEEecc
Confidence 33333 667864 555544
No 224
>PRK08114 cystathionine beta-lyase; Provisional
Probab=97.90 E-value=9.4e-05 Score=54.64 Aligned_cols=81 Identities=17% Similarity=0.141 Sum_probs=63.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHH-HHhCCc
Q psy17798 17 HAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRI-LEGEGF 95 (110)
Q Consensus 17 ~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~-l~~~g~ 95 (110)
|..+|...+....+-+.||++-++ +..+++++++.|++.++.++. ++||+||++...|.+....+.. +++.|+
T Consensus 54 ~~YsR~~nPt~~~le~~la~LEg~--~~a~~~~SGmaAi~~~~~~ll----~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi 127 (395)
T PRK08114 54 LFYGRRGTLTHFSLQEAMCELEGG--AGCALYPCGAAAVANAILAFV----EQGDHVLMTGTAYEPTQDFCSKILSKLGV 127 (395)
T ss_pred ccccCCCChhHHHHHHHHHHHhCC--CeEEEEhHHHHHHHHHHHHHc----CCCCEEEEeCCCcHHHHHHHHHHHHhcCc
Confidence 444555556667778888887664 467788889999999998876 8999999999999887777654 477899
Q ss_pred EEEEecCC
Q psy17798 96 NVLGSNPG 103 (110)
Q Consensus 96 ~v~~v~~~ 103 (110)
++.+++..
T Consensus 128 ~v~~vd~~ 135 (395)
T PRK08114 128 TTTWFDPL 135 (395)
T ss_pred EEEEECCC
Confidence 99998753
No 225
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=97.90 E-value=6.3e-05 Score=55.94 Aligned_cols=81 Identities=10% Similarity=0.046 Sum_probs=61.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCc
Q psy17798 17 HAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGF 95 (110)
Q Consensus 17 ~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~ 95 (110)
|..++...+...++.+.+|++.++ +..++++++++|+..++.++. ++||+|+++...|++....+... +..|+
T Consensus 50 ~~y~r~~~pt~~~Le~~lA~l~g~--~~~l~~ssG~~Ai~~al~al~----~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi 123 (425)
T PRK06084 50 NIYTRIMNPTNDVLEQRVAALEGG--VGALAVASGMAAITYAIQTIA----EAGDNIVSVAKLYGGTYNLLAHTLPRIGI 123 (425)
T ss_pred ccccCCCCchHHHHHHHHHHHhCC--CceeEehhHHHHHHHHHHHHh----CCCCEEEEeCCCcchHHHHHHHhccccee
Confidence 444555556778999999999985 346677888899999999887 79999999988888666555443 44688
Q ss_pred EEEEecCC
Q psy17798 96 NVLGSNPG 103 (110)
Q Consensus 96 ~v~~v~~~ 103 (110)
++.+++.+
T Consensus 124 ~v~~~d~~ 131 (425)
T PRK06084 124 ETRFAAHD 131 (425)
T ss_pred EEEEECCC
Confidence 88877643
No 226
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=97.87 E-value=0.00015 Score=54.50 Aligned_cols=71 Identities=13% Similarity=0.162 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhH----HHHHHHHHhCCcEEEEe
Q psy17798 25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCV----LDSCRILEGEGFNVLGS 100 (110)
Q Consensus 25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~----~~~~~~l~~~g~~v~~v 100 (110)
..++.+++.+|+++|++. .++++|++.|+++++.++ .+||+||++..||+.+ .. ...++..|++++++
T Consensus 122 ~r~~~le~~lA~l~gae~--alvv~sg~aAi~l~l~~l-----~~GdeVIvs~~e~v~~ggs~~i-~~~~~~~G~~~~~v 193 (454)
T TIGR00474 122 SRYSHVEGLLCELTGAED--ALVVNNNAAAVLLALNTL-----AKGKEVIVSRGELVEIGGSFRI-PDVMEQSGAKLVEV 193 (454)
T ss_pred hHHHHHHHHHHHHhCCCc--EEEECCHHHHHHHHHHHh-----CCcCEEEECCChhhhhcchhhH-HHHHHHcCCEEEEe
Confidence 457899999999999864 455677788898888653 6899999999997543 33 23456789999999
Q ss_pred cCC
Q psy17798 101 NPG 103 (110)
Q Consensus 101 ~~~ 103 (110)
+.+
T Consensus 194 ~~~ 196 (454)
T TIGR00474 194 GTT 196 (454)
T ss_pred CCC
Confidence 764
No 227
>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases.; PDB: 3D6K_C 3EZ1_A 3PPL_B.
Probab=97.77 E-value=0.00014 Score=53.46 Aligned_cols=82 Identities=15% Similarity=0.154 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHH--HHHHhHHhhc--------cCCCEEEEcCCCChhHHHHHHHHHh
Q psy17798 23 SEKAVEDARQEIATLINCDPKEIIFTSGATESNNI--AVKGVARFYK--------EKKKHVITTQTEHKCVLDSCRILEG 92 (110)
Q Consensus 23 ~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~--i~~~l~~~~~--------~~g~~vl~~~~e~ps~~~~~~~l~~ 92 (110)
..+++.++|+..|++|++++++|++..|++--+.. +.+++..... .+.-++|++ -|.|.+.+...+.
T Consensus 67 ~l~Gipe~r~l~a~llgv~~~~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCP---vPGYDRHFai~E~ 143 (425)
T PF12897_consen 67 GLDGIPEARELFAELLGVPPENVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCP---VPGYDRHFAITEH 143 (425)
T ss_dssp -SS--HHHHHHHHHHHTS-GGGEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEE---ES--HHHHHHHHH
T ss_pred ccCChHHHHHHHHHHhCCCHHHEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEec---CCCchHHHHHHHh
Confidence 34689999999999999999999998887544332 2222221100 123356764 3888888888899
Q ss_pred CCcEEEEecCCCCcc
Q psy17798 93 EGFNVLGSNPGQGGN 107 (110)
Q Consensus 93 ~g~~v~~v~~~~~G~ 107 (110)
.|++.+.||++++|-
T Consensus 144 ~Giemi~VpM~~dGP 158 (425)
T PF12897_consen 144 FGIEMIPVPMTEDGP 158 (425)
T ss_dssp CT-EEEEEEEETTEE
T ss_pred hCcEEEecCCCCCCC
Confidence 999999999999884
No 228
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=97.73 E-value=0.00039 Score=51.08 Aligned_cols=71 Identities=17% Similarity=0.126 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecC
Q psy17798 25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNP 102 (110)
Q Consensus 25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~ 102 (110)
+...++.+.+|++++. ++.++|++| ++|+..++..+.. ..+++.|++...+|+++...+.. .|.+++.+|.
T Consensus 90 ~~~~~le~~la~~~g~-~~~~~~~SG-~~An~~ai~~l~~--~~~g~~I~~~~~~H~s~~~~~~~---~g~~~~~~~~ 160 (406)
T PRK13393 90 HYHVLLEAELADLHGK-EAALLFTSG-YVSNWAALSTLGS--RLPGCVILSDELNHASMIEGIRH---SRAEKRIFRH 160 (406)
T ss_pred HHHHHHHHHHHHHhCC-CcEEEeCCc-HHHHHHHHHHhhc--CCCCCEEEEccchhHHHHHHHHH---cCCeEEEeCC
Confidence 3578899999999986 345556655 5688878776652 12788888888999998877743 4677777664
No 229
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=97.72 E-value=0.0002 Score=53.22 Aligned_cols=71 Identities=18% Similarity=0.291 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798 25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG 103 (110)
Q Consensus 25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~ 103 (110)
..+.++.+.+|+.+|++ ...++|+|+|.++..++.++. ++||.|++..-.|-|+..++.. .|++++++++.
T Consensus 66 G~I~eAe~~aA~~fGAd-~t~flvnGsT~g~~a~i~a~~----~~gd~VLv~RN~HkSv~~alil---~ga~Pvyi~p~ 136 (417)
T PF01276_consen 66 GIIKEAEELAARAFGAD-KTFFLVNGSTSGNQAMIMALC----RPGDKVLVDRNCHKSVYNALIL---SGAIPVYIPPE 136 (417)
T ss_dssp THHHHHHHHHHHHHTES-EEEEESSHHHHHHHHHHHHHT----TTTCEEEEETT--HHHHHHHHH---HTEEEEEEEEE
T ss_pred cHHHHHHHHHHHhcCCC-eEEEEecCchHHHHHHHHHhc----CCCCEEEEcCCcHHHHHHHHHH---cCCeEEEecCC
Confidence 36788999999999986 458888999999999999988 8999999999999999876543 58999998765
No 230
>PRK05367 glycine dehydrogenase; Provisional
Probab=97.69 E-value=0.00053 Score=55.72 Aligned_cols=80 Identities=13% Similarity=0.194 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCcEEEeCChH-HHHH---HHHHHhHHhhccCCC----EEEEcCCCChhHHHHHHHHHhC
Q psy17798 22 ESEKAVEDARQEIATLINCDPKEIIFTSGAT-ESNN---IAVKGVARFYKEKKK----HVITTQTEHKCVLDSCRILEGE 93 (110)
Q Consensus 22 ~~~~~~~~~R~~la~~l~~~~~~i~~t~gat-~a~~---~i~~~l~~~~~~~g~----~vl~~~~e~ps~~~~~~~l~~~ 93 (110)
...+.+.++-+.+++++|.+ ++.+.++++ +|.. ++++.+.+ ++|+ +|+++...|+++...+ +..
T Consensus 539 G~l~~i~e~q~~l~eltG~d--~~sl~~~~ga~ge~agL~a~r~~~~---~~G~~~r~~vlis~~aH~snp~sa---~~~ 610 (954)
T PRK05367 539 GYRELIDQLEAWLAEITGYD--AVSLQPNAGAQGEYAGLLAIRAYHE---SRGEGHRDVCLIPSSAHGTNPASA---VMA 610 (954)
T ss_pred HHHHHHHHHHHHHHHHHCCC--CEEECccHHHHHHHHHHHHHHHHhh---ccCCCCCCEEEEEchhhhhhHHHH---HHC
Confidence 35677888889999999975 688887655 3332 23333321 3444 6999999999988765 446
Q ss_pred CcEEEEecCCCCcccc
Q psy17798 94 GFNVLGSNPGQGGNFL 109 (110)
Q Consensus 94 g~~v~~v~~~~~G~~~ 109 (110)
|++++++|+|++|.+|
T Consensus 611 G~~vv~v~~d~~G~iD 626 (954)
T PRK05367 611 GMKVVVVACDENGNID 626 (954)
T ss_pred CCEEEEECCCCCCCcC
Confidence 9999999999888765
No 231
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=97.67 E-value=0.00046 Score=52.00 Aligned_cols=98 Identities=19% Similarity=0.280 Sum_probs=70.5
Q ss_pred hhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCC-CCcEEEeCChHHHHHHHHHHhHHhhcc-C---------CCE
Q psy17798 4 YLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCD-PKEIIFTSGATESNNIAVKGVARFYKE-K---------KKH 72 (110)
Q Consensus 4 ~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~-~~~i~~t~gat~a~~~i~~~l~~~~~~-~---------g~~ 72 (110)
++....++++. ++ .+...-.++-..++++++++ .-.-.||+|+|||+.+.+.+..+...+ . ..+
T Consensus 85 ~~~~nl~d~~~--~p---~a~~~E~~~v~~l~~l~~~~~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~~~~~~P~ 159 (460)
T COG0076 85 ALNKNLGDPDE--SP---AAAELEERVVNMLSDLLGAPEEASGTFTSGGTEANLLALLAARERWRKRALAESGKPGGKPN 159 (460)
T ss_pred HHhhcCCCccc--Ch---hHHHHHHHHHHHHHHHhCCCCCCceEEEcChHHHHHHHHHHHHHHHHHHhhhcccccCCCCe
Confidence 44445555553 33 34456667888899999984 445799999999999888777543320 1 237
Q ss_pred EEEcCCCChhHHHHHHHHHhCCcEEEEecCCC-Ccccc
Q psy17798 73 VITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ-GGNFL 109 (110)
Q Consensus 73 vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~-~G~~~ 109 (110)
|+++..-|.|+..+...+ |++++.+|+++ +..+|
T Consensus 160 ii~s~~aH~s~~Kaa~~l---G~~~~~v~~~~~~~~id 194 (460)
T COG0076 160 IVCSETAHFSFEKAARYL---GLGLRRVPTVPTDYRID 194 (460)
T ss_pred EEecCcchhHHHHHHHHh---CCCceeEEeccCccccC
Confidence 999999999998877654 89999999887 56554
No 232
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=97.65 E-value=0.00047 Score=49.95 Aligned_cols=69 Identities=16% Similarity=0.232 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEec
Q psy17798 24 EKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSN 101 (110)
Q Consensus 24 ~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~ 101 (110)
.+..+++++.++++++. ++.|++++| ++++..++.++. ++||.|+++...|+++...+. ..|+++..++
T Consensus 77 ~~l~~~l~~~l~~~~g~-~~~i~~~sG-~~a~~~a~~~~~----~~gd~vi~~~~~~~~~~~~~~---~~g~~~~~~~ 145 (385)
T TIGR01825 77 LRLHEELEEKLAKFKKT-EAALVFQSG-FNTNQGVLSALL----RKGDIVLSDELNHASIIDGLR---LTKATKKIYK 145 (385)
T ss_pred cHHHHHHHHHHHHHhCC-CcEEEECcH-HHHHHHHHHHhC----CCCCEEEEEccccHHHHHHHH---hcCCceEEeC
Confidence 34567788888888885 467888888 556666777765 799999999999999876553 2466665553
No 233
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=97.63 E-value=0.00061 Score=50.08 Aligned_cols=70 Identities=17% Similarity=0.186 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecC
Q psy17798 26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNP 102 (110)
Q Consensus 26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~ 102 (110)
...++++.+|+++|. ++.|+|++| ++++..++..+.. ..+|+.|+++..+|+++...+ +..|+++..++.
T Consensus 92 ~~~~Le~~la~~~g~-~~~i~~~sG-~~a~~~~i~~l~~--~~~g~~vi~~~~~h~s~~~~~---~~~g~~~~~~~~ 161 (410)
T PRK13392 92 PHVLLERELADLHGK-ESALLFTSG-YVSNDAALSTLGK--LLPGCVILSDALNHASMIEGI---RRSGAEKQVFRH 161 (410)
T ss_pred HHHHHHHHHHHHhCC-CCEEEECcH-HHHHHHHHHHHhc--CCCCCEEEEehhhhHHHHHHH---HHcCCeEEEEeC
Confidence 467899999999995 567888777 4677777776652 147899998888898876544 346788777654
No 234
>PLN02822 serine palmitoyltransferase
Probab=97.63 E-value=0.00069 Score=51.22 Aligned_cols=73 Identities=11% Similarity=0.162 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEec
Q psy17798 22 ESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSN 101 (110)
Q Consensus 22 ~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~ 101 (110)
...+...++++.||++++. ++.|+|++|.+ ++..++.++. ++||.|++...-|+++..... -.|.++++++
T Consensus 151 g~~~~~~~Lee~La~~~~~-~~~i~~s~G~~-a~~sai~a~~----~~gd~Ii~d~~~H~s~~~~~~---ls~~~~~~~~ 221 (481)
T PLN02822 151 GTIDVHLDCETKIAKFLGT-PDSILYSYGLS-TIFSVIPAFC----KKGDIIVADEGVHWGIQNGLY---LSRSTIVYFK 221 (481)
T ss_pred cCHHHHHHHHHHHHHHhCC-CCEEEECCHHH-HHHHHHHHhC----CCCCEEEEeCCccHHHHHHHH---HcCCeEEEEC
Confidence 3456789999999999995 47899998887 5667777776 899999998888888755432 2467788887
Q ss_pred CC
Q psy17798 102 PG 103 (110)
Q Consensus 102 ~~ 103 (110)
.+
T Consensus 222 ~n 223 (481)
T PLN02822 222 HN 223 (481)
T ss_pred CC
Confidence 65
No 235
>PLN02509 cystathionine beta-lyase
Probab=97.62 E-value=0.001 Score=50.16 Aligned_cols=72 Identities=7% Similarity=0.010 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCcEEEEecCC
Q psy17798 25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFNVLGSNPG 103 (110)
Q Consensus 25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~v~~v~~~ 103 (110)
+..+.+.+.+|++.+. ++.+++++++.++.+++. +. ++||+||++...|+++...+... ...|++++.++..
T Consensus 133 pt~~aLE~~lA~leg~--e~ai~~~SG~aAi~~il~-ll----~~GD~VI~~~~~y~~t~~ll~~~l~~~G~~v~~vd~~ 205 (464)
T PLN02509 133 PTRDALESLLAKLDKA--DRAFCFTSGMAALSAVTH-LI----KNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTT 205 (464)
T ss_pred HHHHHHHHHHHHHhCC--CEEEEeCcHHHHHHHHHH-Hh----CCCCEEEEcCCchhhHHHHHHHHHHHCCeEEEEeCCC
Confidence 4567788888888764 455666666788876553 43 79999999999999987666543 6789999888654
No 236
>KOG0258|consensus
Probab=97.62 E-value=8.8e-05 Score=54.45 Aligned_cols=77 Identities=18% Similarity=0.242 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHhC------CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCc
Q psy17798 22 ESEKAVEDARQEIATLIN------CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGF 95 (110)
Q Consensus 22 ~~~~~~~~~R~~la~~l~------~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~ 95 (110)
...++++-.|+.+|+|+. ++|++|.+|.||+.|+..++..+.. .+++-|+++-..||-+...... .|.
T Consensus 110 S~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~~---~~~~GvliPiPQYPLYsAti~l---~~~ 183 (475)
T KOG0258|consen 110 SDSQGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLIA---GKKTGVLIPIPQYPLYSATISL---LGG 183 (475)
T ss_pred ccccCChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHhc---CCCCceEeecCCCchhHHHHHH---hCC
Confidence 345689999999999994 6789999999999999999998874 6788899999999988766543 355
Q ss_pred EEEEecCCC
Q psy17798 96 NVLGSNPGQ 104 (110)
Q Consensus 96 ~v~~v~~~~ 104 (110)
..+.--+|+
T Consensus 184 ~~v~YyLdE 192 (475)
T KOG0258|consen 184 TQVPYYLDE 192 (475)
T ss_pred cccceeecc
Confidence 555444554
No 237
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=97.59 E-value=0.0006 Score=48.28 Aligned_cols=69 Identities=20% Similarity=0.331 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecC
Q psy17798 25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNP 102 (110)
Q Consensus 25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~ 102 (110)
+-+.+..+.+|+|+|+| .+=+|.|+-++=..++.++. ++||.|++....|.+...+. ++.|.+|..||-
T Consensus 61 PpI~~F~~dlaeFlg~D--~~R~t~GARe~KfavMhal~----~~gd~vV~D~~aHYttyvAA---Eragl~v~eVp~ 129 (382)
T COG1103 61 PPIKDFLEDLAEFLGMD--EVRVTAGAREAKFAVMHALC----KEGDWVVVDSLAHYTTYVAA---ERAGLNVAEVPN 129 (382)
T ss_pred CcHHHHHHHHHHHhCCc--eeeecccchhhHHHHHHHhc----cCCCEEEEcCcchHHHHHHH---HhcCCeEEecCC
Confidence 34667777899999985 67899999999999999998 89999999999998877665 457999999994
No 238
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=97.55 E-value=0.0014 Score=49.19 Aligned_cols=76 Identities=17% Similarity=0.174 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHhCCCC-CcEEEeCChH-HHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEe
Q psy17798 23 SEKAVEDARQEIATLINCDP-KEIIFTSGAT-ESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGS 100 (110)
Q Consensus 23 ~~~~~~~~R~~la~~l~~~~-~~i~~t~gat-~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v 100 (110)
......++-+.+++++|+++ ...++++|+| .++.+++.++... ..+++.||++...|.|+..+... .|++++++
T Consensus 103 ~~~l~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~alr~~-~~~gd~VI~p~~th~S~~kAi~~---~G~~pv~V 178 (444)
T TIGR03531 103 LYKLTNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSALRHK-RPKAKYVIWPRIDQKSCIKAIST---AGFEPRVI 178 (444)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHcCCc-CCCCCEEEEECcChHHHHHHHHH---cCCeEEEe
Confidence 34577788889999999864 4588999999 6877777766410 01589999999999998876644 69999999
Q ss_pred cC
Q psy17798 101 NP 102 (110)
Q Consensus 101 ~~ 102 (110)
++
T Consensus 179 d~ 180 (444)
T TIGR03531 179 ET 180 (444)
T ss_pred ee
Confidence 85
No 239
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type. This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.
Probab=97.54 E-value=0.0016 Score=50.69 Aligned_cols=99 Identities=14% Similarity=0.061 Sum_probs=70.0
Q ss_pred hcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhh-----ccC-------------
Q psy17798 8 AYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFY-----KEK------------- 69 (110)
Q Consensus 8 ~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~-----~~~------------- 69 (110)
..-||....+..+...+....++-+.+++++|.++..=.||+|+|+|+-..+....... .+.
T Consensus 106 ~~~N~n~~~~e~SP~~t~lE~~vi~~la~l~G~~~~~G~~TsGGT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~ 185 (608)
T TIGR03811 106 MLWNGNNVAYESSPATSQMEEEVGKEFATLMGYKNGWGHIVADGSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWE 185 (608)
T ss_pred HHhCCCCCccccCchHHHHHHHHHHHHHHHhCCCCCCeEEeCChHHHHHHHHHHHHHhhhccchhhhccccccccccchh
Confidence 34455544455666677778889999999999866566799999999987655432110 000
Q ss_pred ------------------------------------CCEEEEcCCCChhHHHHHHHHHhCCc---EEEEecCCCCcccc
Q psy17798 70 ------------------------------------KKHVITTQTEHKCVLDSCRILEGEGF---NVLGSNPGQGGNFL 109 (110)
Q Consensus 70 ------------------------------------g~~vl~~~~e~ps~~~~~~~l~~~g~---~v~~v~~~~~G~~~ 109 (110)
-.+++++..-|.|+..+...+ |+ .++.||+|++|.+|
T Consensus 186 l~n~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~il---GlG~~~vv~VpvD~~~rmd 261 (608)
T TIGR03811 186 LLNMPTKEIMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAADII---GIGLDQVIPVPVDSNYRMD 261 (608)
T ss_pred hcccccccccccccccccchhhhhhhccccccccccceEEEECCCccHHHHHHHHHc---CCCcccEEEeecCCCCcCC
Confidence 015788887799998887665 65 58999999998876
No 240
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=97.48 E-value=0.0011 Score=48.84 Aligned_cols=81 Identities=15% Similarity=0.146 Sum_probs=65.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCc
Q psy17798 17 HAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGF 95 (110)
Q Consensus 17 ~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~ 95 (110)
+..+|...+....+.+.||++-++ +..++++++..|+..++.++. ++||+||.+..-|......++.+ .+.|+
T Consensus 47 ~~Y~R~gnPt~~~le~~la~Le~g--~~a~~~~SGmaAi~~~l~~ll----~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv 120 (386)
T PF01053_consen 47 YIYSRYGNPTVRALEQRLAALEGG--EDALLFSSGMAAISAALLALL----KPGDHIVASDDLYGGTYRLLEELLPRFGV 120 (386)
T ss_dssp CSBTTTC-HHHHHHHHHHHHHHT---SEEEEESSHHHHHHHHHHHHS-----TTBEEEEESSSSHHHHHHHHHCHHHTTS
T ss_pred cceeccccccHHHHHHHHHHhhcc--cceeeccchHHHHHHHHHhhc----ccCCceEecCCccCcchhhhhhhhcccCc
Confidence 555666677888899999999887 578889999999999988886 89999999998898888777764 77899
Q ss_pred EEEEecCC
Q psy17798 96 NVLGSNPG 103 (110)
Q Consensus 96 ~v~~v~~~ 103 (110)
++.++..+
T Consensus 121 ~v~~~d~~ 128 (386)
T PF01053_consen 121 EVTFVDPT 128 (386)
T ss_dssp EEEEESTT
T ss_pred EEEEeCch
Confidence 99998764
No 241
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=97.42 E-value=0.00067 Score=48.21 Aligned_cols=81 Identities=19% Similarity=0.270 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecC
Q psy17798 23 SEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNP 102 (110)
Q Consensus 23 ~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~ 102 (110)
..+...++.+.+++++|.+ ..+|++++|.|+.++++++. ++++.||+...-|..+...-..-...|++++.+|.
T Consensus 27 ~D~~~~~l~~~i~~l~g~e--~a~f~~sGT~An~~al~~~~----~~~~~vi~~~~aHi~~~E~ga~~~~~G~~~~~l~~ 100 (290)
T PF01212_consen 27 EDPTTARLEERIAELFGKE--AALFVPSGTMANQLALRAHL----RPGESVICADTAHIHFDETGAIEELSGAKLIPLPS 100 (290)
T ss_dssp SSHHHHHHHHHHHHHHTSS--EEEEESSHHHHHHHHHHHHH----HTTEEEEEETTEHHHHSSTTHHHHHTTCEEEEEBE
T ss_pred CChhHHHHHHHHHHHcCCC--EEEEeCCCChHHHHHHHHHH----hcCCceeccccceeeeeccchhhHhcCcEEEECCC
Confidence 3457788999999999964 45799999999999999988 68999998765554433221111237999999998
Q ss_pred CCCcccc
Q psy17798 103 GQGGNFL 109 (110)
Q Consensus 103 ~~~G~~~ 109 (110)
+++|.++
T Consensus 101 ~~~G~l~ 107 (290)
T PF01212_consen 101 DDDGKLT 107 (290)
T ss_dssp CTGTBB-
T ss_pred cccCCCC
Confidence 7657664
No 242
>PRK13578 ornithine decarboxylase; Provisional
Probab=97.40 E-value=0.0018 Score=51.15 Aligned_cols=73 Identities=19% Similarity=0.259 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798 25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ 104 (110)
Q Consensus 25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~ 104 (110)
..+.++-+.+|+.+|++ ...++++|+|.++..++.+.. ++||.||+..-.|-|+..... .-.|+..++++...
T Consensus 174 G~i~eAq~~AA~~fgAd-~tyFlvNGTS~gn~a~i~a~~----~~Gd~VLvdRN~HKSv~hgaL--iLsGa~PVYl~P~~ 246 (720)
T PRK13578 174 GAAKDAQKHAAKVFNAD-KTYFVLNGTSASNKVVTNALL----TPGDLVLFDRNNHKSNHHGAL--IQAGATPVYLETAR 246 (720)
T ss_pred hHHHHHHHHHHHHhCCC-ceEEEeCChhHHHHHHHHHhc----CCCCEEEeecccHHHHHHHHH--HHcCCeEEEeeccc
Confidence 35778889999999986 568899999999999999987 899999999999999876422 23699999987653
No 243
>PLN02271 serine hydroxymethyltransferase
Probab=97.36 E-value=0.0013 Score=50.62 Aligned_cols=95 Identities=13% Similarity=0.073 Sum_probs=64.0
Q ss_pred cCCCCCcCChHHHHHHHHHHH-HHHHHHHHhCCCC----CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhH
Q psy17798 9 YGNPHSRTHAYGWESEKAVED-ARQEIATLINCDP----KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCV 83 (110)
Q Consensus 9 ~~n~~~~~~~~~~~~~~~~~~-~R~~la~~l~~~~----~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~ 83 (110)
.+-|+.+ |..|-+.-+.++. +.+.+.+++++++ -+|--- +++.|+..++.++. +|||+|+..+.+|.+.
T Consensus 178 EG~pG~R-yy~G~~~iD~iE~la~era~~lF~~~~~~~gaNVQp~-SGs~AN~aV~~ALl----~PGD~IL~ldl~~GGH 251 (586)
T PLN02271 178 EGMPGAR-YYTGNQYIDQIERLCCERALAAFGLDSEKWGVNVQPY-SCTSANFAVYTGLL----LPGDRIMGLDSPSGGH 251 (586)
T ss_pred CCCCCCc-CCCCChhHHHHHHHHHHHHHHHhCCcccccccceeec-cHHHHHHHHHHHhc----CCCCEEEEecCCCCCc
Confidence 3566664 4445554455544 6667778889876 455444 77788999999986 8999999999999988
Q ss_pred HHHHH------HHHhCCcEEEEec--CC-CCcccc
Q psy17798 84 LDSCR------ILEGEGFNVLGSN--PG-QGGNFL 109 (110)
Q Consensus 84 ~~~~~------~l~~~g~~v~~v~--~~-~~G~~~ 109 (110)
..... .....|..+..+| +| ++|.+|
T Consensus 252 lshg~~~~~g~~vs~sG~~~~~vpY~~d~~~g~ID 286 (586)
T PLN02271 252 MSHGYYTPGGKKVSGASIFFESLPYKVNPQTGYID 286 (586)
T ss_pred hhcccccccccccccccceEEEEEcccccccCccC
Confidence 76542 2233465555554 75 457765
No 244
>PRK15029 arginine decarboxylase; Provisional
Probab=97.35 E-value=0.0018 Score=51.55 Aligned_cols=71 Identities=15% Similarity=0.193 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798 25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG 103 (110)
Q Consensus 25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~ 103 (110)
..+.++-+.+|+.+|++ ...++|+|+|.++..++.+.. ++||.|++..-.|-|+..++. -.|+..+++++.
T Consensus 205 G~I~eAq~~aA~~fgA~-~t~FlvNGST~gn~a~i~a~~----~~gd~Vlv~RN~HKSv~~al~---L~ga~Pvyl~P~ 275 (755)
T PRK15029 205 GAFGESEKYAARVFGAD-RSWSVVVGTSGSNRTIMQACM----TDNDVVVVDRNCHKSIEQGLI---LTGAKPVYMVPS 275 (755)
T ss_pred cHHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHHhc----CCCCEEEeecccHHHHHHHHH---HcCCeEEEeccc
Confidence 46788999999999986 578899999999999999887 899999999999999887553 369999998754
No 245
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=97.33 E-value=0.00085 Score=49.01 Aligned_cols=66 Identities=11% Similarity=0.054 Sum_probs=51.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHH
Q psy17798 17 HAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRI 89 (110)
Q Consensus 17 ~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~ 89 (110)
|..++...+...++++++|++.+ .+++++++|+++|+.+++. +. ++||+||++...|.+....+..
T Consensus 46 ~~Y~R~~~p~~~~le~~lA~leg--~~~~v~~~sG~aAi~~~l~-~l----~~GD~VI~~~~~yg~~~~~~~~ 111 (364)
T PRK07269 46 FDYTRTKNPTRAKLEETLAAIES--ADYALATSSGMSAIVLAFS-VF----PVGSKVVAVRDLYGGSFRWFNQ 111 (364)
T ss_pred cceeCCCCccHHHHHHHHHHHhC--CCeEEEeCCHHHHHHHHHH-Hh----CCCCEEEEecCCcCchHHHHHH
Confidence 34455556678899999999987 4689999999999998884 43 7999999998777766543333
No 246
>PLN02880 tyrosine decarboxylase
Probab=97.32 E-value=0.0033 Score=47.78 Aligned_cols=90 Identities=13% Similarity=0.089 Sum_probs=61.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhCCCCC-------cEEEeCChHHHHHHHHHHhHHhhcc-------CCCEEEEcCCCChh
Q psy17798 17 HAYGWESEKAVEDARQEIATLINCDPK-------EIIFTSGATESNNIAVKGVARFYKE-------KKKHVITTQTEHKC 82 (110)
Q Consensus 17 ~~~~~~~~~~~~~~R~~la~~l~~~~~-------~i~~t~gat~a~~~i~~~l~~~~~~-------~g~~vl~~~~e~ps 82 (110)
+..+........++-+.+++++|.+.+ .-+||+|+|+|+...+.+......+ ++-.|++++.-|.|
T Consensus 114 ~~~sp~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~S 193 (490)
T PLN02880 114 WITSPAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSA 193 (490)
T ss_pred cccCcccHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHH
Confidence 344445566777899999999998643 4789999999987776554321111 22356778888999
Q ss_pred HHHHHHHHHhCCc---EEEEecCCC--Ccccc
Q psy17798 83 VLDSCRILEGEGF---NVLGSNPGQ--GGNFL 109 (110)
Q Consensus 83 ~~~~~~~l~~~g~---~v~~v~~~~--~G~~~ 109 (110)
+..+...+ |+ .++.||+|+ ++.+|
T Consensus 194 v~Kaa~~l---Glg~~~v~~Vp~d~~~~~~md 222 (490)
T PLN02880 194 LQKACQIA---GIHPENCRLLKTDSSTNYALA 222 (490)
T ss_pred HHHHHHHc---CCCHHHEEEeecCCCcCCcCC
Confidence 98887665 55 488899975 34443
No 247
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=97.29 E-value=0.0027 Score=50.18 Aligned_cols=71 Identities=18% Similarity=0.155 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798 25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG 103 (110)
Q Consensus 25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~ 103 (110)
..+.++-+.+|+.+|++ ...++++|+|.++..++.+.. ++||.|++..-.|-|+..++ .-.|+..+++++.
T Consensus 195 G~i~eAe~~aA~~fgAd-~tyfvvNGTS~~n~av~~a~~----~~Gd~VLvdRN~HKSv~~aL---ilsga~PVYl~P~ 265 (713)
T PRK15399 195 GPHLEAEEYIARTFGAE-QSYIVTNGTSTSNKIVGMYAA----PAGSTLLIDRNCHKSLAHLL---MMSDVVPIWLKPT 265 (713)
T ss_pred hHHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHhc----CCCCEEEeecccHHHHHHHH---HHcCCeeEEeccc
Confidence 35678888899999986 568889999999999999987 89999999999999987753 3479999998765
No 248
>PLN02590 probable tyrosine decarboxylase
Probab=97.29 E-value=0.0041 Score=47.80 Aligned_cols=91 Identities=12% Similarity=0.007 Sum_probs=62.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhCCCC-------CcEEEeCChHHHHHHHHHHhHHhhc-------cCCCEEEEcCCCCh
Q psy17798 16 THAYGWESEKAVEDARQEIATLINCDP-------KEIIFTSGATESNNIAVKGVARFYK-------EKKKHVITTQTEHK 81 (110)
Q Consensus 16 ~~~~~~~~~~~~~~~R~~la~~l~~~~-------~~i~~t~gat~a~~~i~~~l~~~~~-------~~g~~vl~~~~e~p 81 (110)
.+..+........++-+.++++++.++ ..-+||+|+|+|+-..+.+...... .++-.|++|+.-|.
T Consensus 161 ~~~~sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~ 240 (539)
T PLN02590 161 TWLTSPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHS 240 (539)
T ss_pred CcccCchhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchH
Confidence 444555566777789999999999864 3478899999998776655332111 12235667888899
Q ss_pred hHHHHHHHHHhCCc---EEEEecCCC--Ccccc
Q psy17798 82 CVLDSCRILEGEGF---NVLGSNPGQ--GGNFL 109 (110)
Q Consensus 82 s~~~~~~~l~~~g~---~v~~v~~~~--~G~~~ 109 (110)
|+..+...+ |+ .++.||+|+ ++.+|
T Consensus 241 Sv~KAa~il---Glg~~~vr~Vp~d~~~~~~md 270 (539)
T PLN02590 241 SFRKACLIG---GIHEENIRLLKTDSSTNYGMP 270 (539)
T ss_pred HHHHHHHHc---CCCcccEEEEeCCCCCCCcCC
Confidence 988877664 55 588999984 34544
No 249
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=97.28 E-value=0.0031 Score=49.86 Aligned_cols=72 Identities=19% Similarity=0.223 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798 25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ 104 (110)
Q Consensus 25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~ 104 (110)
..+.++-+.+|+.+|++ ...++|+|+|.++..++.+.. .+||.||+..-.|-|+..++ .-.|+..++++++.
T Consensus 195 G~i~eAe~~AA~~fgAd-~tyfvvNGTS~~n~av~~a~~----~~Gd~VLvdRN~HKSv~haL---ilsga~PVYl~P~r 266 (714)
T PRK15400 195 GPHKEAEEYIARVFNAD-RSYMVTNGTSTANKIVGMYSA----PAGSTVLIDRNCHKSLTHLM---MMSDVTPIYFRPTR 266 (714)
T ss_pred hHHHHHHHHHHHHhCCC-cEEEEeCchHHHHHHHHHHhc----CCCCEEEeecccHHHHHHHH---HHcCCeEEEecccc
Confidence 36778888999999986 468889999999999999887 89999999999999987753 34799999987653
No 250
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=97.27 E-value=0.0044 Score=45.46 Aligned_cols=71 Identities=11% Similarity=0.129 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEec
Q psy17798 24 EKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSN 101 (110)
Q Consensus 24 ~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~ 101 (110)
.+...++++.+|++++. ++ .++.+++++|+..++..+.. ..+++.|+.+..+|++....+. ..|+++..++
T Consensus 89 ~~~~~~Le~~la~~~g~-~~-~l~~~sG~~an~~ai~~l~~--~~~~~~v~~~~~~h~s~~~~~~---~~g~~~~~~~ 159 (402)
T TIGR01821 89 NIPHVELEAELADLHGK-ES-ALVFTSGYVANDATLATLAK--IIPGCVIFSDELNHASMIEGIR---HSGAEKFIFR 159 (402)
T ss_pred cHHHHHHHHHHHHHhCC-Ce-EEEECchHHHHHHHHHHhhC--CCCCCEEEEcchHhHHHHHHHH---HcCCeEEEEC
Confidence 44667899999999985 33 45555568888888877651 1367788877788988876653 3566665554
No 251
>PLN02397 aspartate transaminase
Probab=97.24 E-value=0.0013 Score=48.75 Aligned_cols=77 Identities=12% Similarity=0.020 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHhCC-C-----CCcEEE--eCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHh
Q psy17798 21 WESEKAVEDARQEIATLINC-D-----PKEIIF--TSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEG 92 (110)
Q Consensus 21 ~~~~~~~~~~R~~la~~l~~-~-----~~~i~~--t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~ 92 (110)
+....++.++|+++++++.- . +++|.. +.+++.+..+++..+.. +.+||+|++++..||.+.... +.
T Consensus 87 Y~~~~G~~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g~Ga~~l~~~~~~~--~~pGd~Vlv~~P~y~~y~~~~---~~ 161 (423)
T PLN02397 87 YLPIEGLAEFNKLSAKLAYGADSPAIKENRVATVQCLSGTGSLRLGAEFLAR--FYPGSTIYIPNPTWGNHHNIF---RD 161 (423)
T ss_pred CCCcCCCHHHHHHHHHHHcCCCCchhhcCeeEeeecccchHHHHHHHHHHHH--hCCCCEEEEeCCCchhHHHHH---HH
Confidence 34456888999999998742 1 234421 33443443333322221 269999998776666665444 55
Q ss_pred CCcEEEEecC
Q psy17798 93 EGFNVLGSNP 102 (110)
Q Consensus 93 ~g~~v~~v~~ 102 (110)
.|++++.+|+
T Consensus 162 ~g~~~~~v~l 171 (423)
T PLN02397 162 AGVPVRTYRY 171 (423)
T ss_pred cCCeEEEeec
Confidence 7999999987
No 252
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=97.23 E-value=0.0027 Score=46.35 Aligned_cols=64 Identities=14% Similarity=0.111 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH
Q psy17798 25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL 90 (110)
Q Consensus 25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l 90 (110)
+...++.+.++++++.++++|+|++|+++|+..+++.+.. ..++++|++.+..|++.......+
T Consensus 79 ~~~~~l~~~l~~~~~~~~~~v~~~~sgsea~~~al~~~~~--~~~~~~ii~~~~~yhg~~~~~~~~ 142 (413)
T cd00610 79 EPAVELAELLLALTPEGLDKVFFVNSGTEAVEAALKLARA--YTGRKKIISFEGAYHGRTLGALSL 142 (413)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHH--HcCCCeEEEECCCcCCccHHHHHh
Confidence 4567888999999987789999999999999999987642 156888988877777765544433
No 253
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=97.10 E-value=0.0024 Score=47.38 Aligned_cols=58 Identities=17% Similarity=0.244 Sum_probs=46.0
Q ss_pred HHHHHHHHHH-HHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChh
Q psy17798 20 GWESEKAVED-ARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKC 82 (110)
Q Consensus 20 ~~~~~~~~~~-~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps 82 (110)
|....+.+++ +++.+|+++|.+ .-++++++++.|+..++.++. ++||+|+++...|.+
T Consensus 68 G~~~~~~lE~~~~~~la~l~g~~-~alv~~~SG~~A~~~~l~al~----~~GD~Vl~~~~~~~~ 126 (416)
T PRK13034 68 GCEFVDEVEALAIERAKQLFGCD-YANVQPHSGSQANGAVYLALL----KPGDTILGMSLSHGG 126 (416)
T ss_pred CChHHHHHHHHHHHHHHHHhCCC-ceEEecCCcHHHHHHHHHHhc----CCCCEEEEcCcccee
Confidence 3344566666 888999999976 333566788999999999986 899999999888876
No 254
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=97.08 E-value=0.013 Score=43.26 Aligned_cols=79 Identities=10% Similarity=0.100 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCC-CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCcE
Q psy17798 19 YGWESEKAVEDARQEIATLINCDP-KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFN 96 (110)
Q Consensus 19 ~~~~~~~~~~~~R~~la~~l~~~~-~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~ 96 (110)
.+......+.++++.+...++++. +-+++++++|-++...+.++. +|||+|++. ....+-.-|..+ ++.|.+
T Consensus 32 ~s~~F~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl~----~pgdkVLv~--~nG~FG~R~~~ia~~~g~~ 105 (383)
T COG0075 32 RSPDFVGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASLV----EPGDKVLVV--VNGKFGERFAEIAERYGAE 105 (383)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhcc----CCCCeEEEE--eCChHHHHHHHHHHHhCCc
Confidence 345667788999999999999874 667888999999999999987 899999874 455555555555 788999
Q ss_pred EEEecCC
Q psy17798 97 VLGSNPG 103 (110)
Q Consensus 97 v~~v~~~ 103 (110)
++.+...
T Consensus 106 v~~~~~~ 112 (383)
T COG0075 106 VVVLEVE 112 (383)
T ss_pred eEEEeCC
Confidence 9888765
No 255
>PRK12566 glycine dehydrogenase; Provisional
Probab=97.02 E-value=0.0052 Score=49.95 Aligned_cols=84 Identities=10% Similarity=0.163 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCcEEEeC-ChHHHHHHHHHHhHHhhc----cCCCEEEEcCCCChhHHHHHHHHHhCCc
Q psy17798 21 WESEKAVEDARQEIATLINCDPKEIIFTS-GATESNNIAVKGVARFYK----EKKKHVITTQTEHKCVLDSCRILEGEGF 95 (110)
Q Consensus 21 ~~~~~~~~~~R~~la~~l~~~~~~i~~t~-gat~a~~~i~~~l~~~~~----~~g~~vl~~~~e~ps~~~~~~~l~~~g~ 95 (110)
....+.+.++-+.++++.|.+.- .+-+ +++.+....+.++...+- ..+++|+++..+|+++...+ ...|+
T Consensus 539 QG~lq~i~elq~~l~eLtGmd~~--Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNpasa---~~~Gi 613 (954)
T PRK12566 539 EGYRAMIDELEAWLCAITGFDAI--CMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNPASA---QMAGM 613 (954)
T ss_pred cCHHHHHHHHHHHHHHHHCCCeE--eecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCHHHH---HHCCC
Confidence 34567888888999999998643 5555 444455455555431000 23568999999998886553 45799
Q ss_pred EEEEecCCCCcccc
Q psy17798 96 NVLGSNPGQGGNFL 109 (110)
Q Consensus 96 ~v~~v~~~~~G~~~ 109 (110)
++++||.|++|.+|
T Consensus 614 eVv~Vp~D~~G~iD 627 (954)
T PRK12566 614 RVVIVECDPDGNVD 627 (954)
T ss_pred EEEEeccCCCCCcC
Confidence 99999999899876
No 256
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=96.93 E-value=0.0021 Score=46.59 Aligned_cols=57 Identities=21% Similarity=0.353 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhH
Q psy17798 21 WESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCV 83 (110)
Q Consensus 21 ~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~ 83 (110)
|...+...++-+.+++.++. ..++|++++|.++.+.+.+.. +|+..|++....|-..
T Consensus 31 YG~D~~~~~~e~~~ae~~g~--~a~~Fv~sGT~aN~lal~~~~----~~~~~vi~~~~aHi~~ 87 (342)
T COG2008 31 YGEDPTTNALEQRIAELFGK--EAALFVPSGTQANQLALAAHC----QPGESVICHETAHIYT 87 (342)
T ss_pred CCCCHHHHHHHHHHHHHhCC--ceEEEecCccHHHHHHHHHhc----CCCCeEEEecccccee
Confidence 33445677888889998887 889999999999999999988 8999999876666443
No 257
>KOG2862|consensus
Probab=96.92 E-value=0.022 Score=41.20 Aligned_cols=92 Identities=12% Similarity=0.112 Sum_probs=66.8
Q ss_pred hhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCC-CCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHH
Q psy17798 7 NAYGNPHSRTHAYGWESEKAVEDARQEIATLINC-DPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLD 85 (110)
Q Consensus 7 ~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~-~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~ 85 (110)
..+.+|.- ...+.+..+.+++.++-+...+.. .+...+|..+++-++..++..+. .|||+|++-..--=+ .+
T Consensus 34 ~A~~~~~l--gh~sPe~~qIm~~v~egikyVFkT~n~~tf~isgsGh~g~E~al~N~l----ePgd~vLv~~~G~wg-~r 106 (385)
T KOG2862|consen 34 EAMSRPSL--GHMSPEFVQIMDEVLEGIKYVFKTANAQTFVISGSGHSGWEAALVNLL----EPGDNVLVVSTGTWG-QR 106 (385)
T ss_pred HhhcCCcc--ccCCHHHHHHHHHHHHHHHHHhccCCCceEEEecCCcchHHHHHHhhc----CCCCeEEEEEechHH-HH
Confidence 34556654 234567788999999999998886 45668888888888888877766 899999874432222 34
Q ss_pred HHHHHHhCCcEEEEecCCCC
Q psy17798 86 SCRILEGEGFNVLGSNPGQG 105 (110)
Q Consensus 86 ~~~~l~~~g~~v~~v~~~~~ 105 (110)
+....++.|++|..|+.+..
T Consensus 107 a~D~~~r~ga~V~~v~~~~G 126 (385)
T KOG2862|consen 107 AADCARRYGAEVDVVEADIG 126 (385)
T ss_pred HHHHHHhhCceeeEEecCcc
Confidence 45555789999999988754
No 258
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=96.87 E-value=0.0096 Score=43.72 Aligned_cols=78 Identities=13% Similarity=0.180 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHhC--CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEe
Q psy17798 23 SEKAVEDARQEIATLIN--CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGS 100 (110)
Q Consensus 23 ~~~~~~~~R~~la~~l~--~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v 100 (110)
..+.++......++..+ .+++.|+|++|.--++.++++++- ++||.|++...-||.+.... +..|-++...
T Consensus 62 ~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi~~~I~~~T----~~gd~Vvi~tPvY~PF~~~i---~~n~R~~i~~ 134 (388)
T COG1168 62 SDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGISLAIRALT----KPGDGVVIQTPVYPPFYNAI---KLNGRKVIEN 134 (388)
T ss_pred CHHHHHHHHHHHHHhcCCCCCcceEEEcCcchHhHHHHHHHhC----cCCCeeEecCCCchHHHHHH---hhcCcEEEec
Confidence 33455555556655544 468889999999999999999987 89999999887787777655 4578889999
Q ss_pred cCC-CCcc
Q psy17798 101 NPG-QGGN 107 (110)
Q Consensus 101 ~~~-~~G~ 107 (110)
|+. ++|.
T Consensus 135 pL~~~~~~ 142 (388)
T COG1168 135 PLVEDDGR 142 (388)
T ss_pred cccccCCc
Confidence 987 3454
No 259
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=96.87 E-value=0.0092 Score=48.57 Aligned_cols=85 Identities=11% Similarity=0.160 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhc----cCCCEEEEcCCCChhHHHHHHHHHhCCcE
Q psy17798 21 WESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYK----EKKKHVITTQTEHKCVLDSCRILEGEGFN 96 (110)
Q Consensus 21 ~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~----~~g~~vl~~~~e~ps~~~~~~~l~~~g~~ 96 (110)
....+.+.++-+.++++.|.+. --+..++++.|....+.++...+- ..++.|+++...|+++...+ +..|++
T Consensus 526 qG~lq~i~elq~~l~eltGmd~-~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnPasa---~~~G~~ 601 (939)
T TIGR00461 526 EGYQELIAQLEKWLCSITGFDA-ISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNPASA---AMAGMQ 601 (939)
T ss_pred HHHHHHHHHHHHHHHHHHCCCC-cccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCHHHH---HHCCCE
Confidence 3466889999999999999883 223444455544434433321000 13468999999997776553 446999
Q ss_pred EEEecCCCCcccc
Q psy17798 97 VLGSNPGQGGNFL 109 (110)
Q Consensus 97 v~~v~~~~~G~~~ 109 (110)
+++||+|++|.+|
T Consensus 602 Vv~V~~d~~G~iD 614 (939)
T TIGR00461 602 VVPVNCDQDGNID 614 (939)
T ss_pred EEEeccCCCCCcC
Confidence 9999999999886
No 260
>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type. This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.
Probab=96.84 E-value=0.024 Score=41.75 Aligned_cols=77 Identities=8% Similarity=0.034 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCC-c-EEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHH--HHHHhCCc
Q psy17798 20 GWESEKAVEDARQEIATLINCDPK-E-IIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSC--RILEGEGF 95 (110)
Q Consensus 20 ~~~~~~~~~~~R~~la~~l~~~~~-~-i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~--~~l~~~g~ 95 (110)
+....+.+.++++.+.++++.+.+ + +++++|+|.++..++.++.. ++|+++++.. .+-.-| +..+..|+
T Consensus 34 s~~F~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~~---~~g~~vLv~g----~FG~r~~~eia~~~g~ 106 (374)
T TIGR01365 34 SKLGKEKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSMLG---CRGVDVLAWE----SFGKGWVTDVTKQLKL 106 (374)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcCC---CCCCeEEEEC----HHHHHHHHHHHHhcCC
Confidence 345567889999999999997433 3 66799999999999988762 3788888643 443333 33467888
Q ss_pred -EEEEecCC
Q psy17798 96 -NVLGSNPG 103 (110)
Q Consensus 96 -~v~~v~~~ 103 (110)
++..+...
T Consensus 107 ~~v~~l~~~ 115 (374)
T TIGR01365 107 PDVRVLEAE 115 (374)
T ss_pred CCcEEEcCC
Confidence 47777654
No 261
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=96.79 E-value=0.012 Score=43.64 Aligned_cols=81 Identities=14% Similarity=0.143 Sum_probs=59.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCc
Q psy17798 17 HAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGF 95 (110)
Q Consensus 17 ~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~ 95 (110)
+..++...+....+-+.++.+-| .+..+.++++..|+..++.++. ++||+||.+..-|.+.......+ ++.|+
T Consensus 55 ~~Y~R~~nPT~~~lE~~~a~LEg--~~~~~afsSGmaAI~~~~l~ll----~~GD~vl~~~~~YG~t~~~~~~~l~~~gi 128 (396)
T COG0626 55 YDYSRTGNPTRDALEEALAELEG--GEDAFAFSSGMAAISTALLALL----KAGDHVLLPDDLYGGTYRLFEKILQKFGV 128 (396)
T ss_pred cccccCCCccHHHHHHHHHHhhC--CCcEEEecCcHHHHHHHHHHhc----CCCCEEEecCCccchHHHHHHHHHHhcCe
Confidence 44444444455556666666554 3567778888889998887776 89999999988888888777776 78899
Q ss_pred EEEEecCC
Q psy17798 96 NVLGSNPG 103 (110)
Q Consensus 96 ~v~~v~~~ 103 (110)
++.++...
T Consensus 129 ~~~~~d~~ 136 (396)
T COG0626 129 EVTFVDPG 136 (396)
T ss_pred EEEEECCC
Confidence 99988654
No 262
>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]
Probab=96.62 E-value=0.024 Score=43.68 Aligned_cols=71 Identities=15% Similarity=0.275 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798 26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ 104 (110)
Q Consensus 26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~ 104 (110)
.+.++-+.+|+.+|++ ...++++|+|.|+..++.+.. .+||.|++..-.|-|....+ -..|+..+++....
T Consensus 71 ~i~eAqe~aA~~fgAd-~tyFvvNGTS~ank~vi~a~~----~~GD~VLvdRN~HKSi~~gl---ilaGa~Pvyl~p~~ 141 (557)
T COG1982 71 PIKEAQELAARVFGAD-HTYFVVNGTSTANKAVINAVL----TPGDKVLVDRNCHKSIHHGL---ILAGATPVYLEPSR 141 (557)
T ss_pred cHHHHHHHHHHHhCCC-ceEEEECCccHHHHHHHHhhc----CCCCEEEecCCccHHHHHHH---HHcCCceEEecCCC
Confidence 5678888899999986 368889999999999999988 89999999999999987663 33688888876554
No 263
>PRK09064 5-aminolevulinate synthase; Validated
Probab=96.54 E-value=0.037 Score=40.63 Aligned_cols=72 Identities=17% Similarity=0.194 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecC
Q psy17798 24 EKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNP 102 (110)
Q Consensus 24 ~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~ 102 (110)
.+...++++.+|++++. ++.++|++| ++++..++..+.. ..+++.|+....+|.+....+.. .|+++..++.
T Consensus 90 ~~~~~~l~~~la~~~g~-~~~~~~~sG-~~an~~ai~~l~~--~~~~~~i~~~~~~h~s~~~~~~~---~~~~~~~~~~ 161 (407)
T PRK09064 90 NHYHVELERELADLHGK-EAALVFTSG-YVSNDATLSTLAK--LIPDCVIFSDELNHASMIEGIRR---SRCEKHIFRH 161 (407)
T ss_pred HHHHHHHHHHHHHHhCC-CcEEEECcH-HHHHHHHHHHHhC--CCCCCEEEEeCcchHHHHHHHHH---cCCcEEEECC
Confidence 45678999999999984 556666665 4666666665541 13677777777888887665532 4566555553
No 264
>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.
Probab=96.47 E-value=0.03 Score=42.05 Aligned_cols=87 Identities=17% Similarity=0.178 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCcEEEEe
Q psy17798 22 ESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFNVLGS 100 (110)
Q Consensus 22 ~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~v~~v 100 (110)
...+.+-+.-..++++.|.+.-+.-+-.++|.+-..++.+.... .+++++|+++..-||.+....+.. ...|++++.+
T Consensus 107 G~Lq~lfe~Qs~i~eLTGmdvaNaSlyd~atA~aEa~~ma~r~~-~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~iv~~ 185 (429)
T PF02347_consen 107 GRLQALFEYQSMICELTGMDVANASLYDGATAAAEAMLMAVRAT-KRKRNKVLVPESLHPQTRAVLRTYAAPLGIEIVEV 185 (429)
T ss_dssp HHHHHHHHHHHHHHHHHTSSEE-SEBSSCCHHHHHHHHHHHHHH-TT---EEEEETTS-CHHHHHHHHHCCHCCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhhCCCccCCCCCChhHHHHHHHHHHHHhc-ccCCcEEEEcCCcChhhHHHHHHhhhhCCeEEEEe
Confidence 45567889999999999988666677777776666555554321 133469999999999998877766 5689999999
Q ss_pred cCCCCcccc
Q psy17798 101 NPGQGGNFL 109 (110)
Q Consensus 101 ~~~~~G~~~ 109 (110)
|.+++|..|
T Consensus 186 ~~~~~~~~d 194 (429)
T PF02347_consen 186 PLDEDGTTD 194 (429)
T ss_dssp -BBTTCSB-
T ss_pred cccccCCcc
Confidence 999887764
No 265
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=96.47 E-value=0.023 Score=46.37 Aligned_cols=81 Identities=10% Similarity=0.037 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCcEEEEe
Q psy17798 22 ESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFNVLGS 100 (110)
Q Consensus 22 ~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~v~~v 100 (110)
...+.+-+....++++.|.+..|..+..++|.+...++.+.... .+++++|++++..||.....++.. +..|++++.+
T Consensus 106 G~Le~l~e~Qt~i~eLtGm~~aNaSl~d~atA~aEa~~~a~~~~-~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~v~~~ 184 (939)
T TIGR00461 106 GRLEALLNFQTVVSDLTGLPVANASLLDEGTAAAEAMALSFNVS-KKKANKFFVAKDLHPQTKSVLHTRAKPFGIEVIVV 184 (939)
T ss_pred HHHHHHHHHHHHHHHHHCCChhhhhccchhhHHHHHHHHHHHhh-cCCCCEEEECCCCCcchHHHHHHHHHhcCcEEEEE
Confidence 34567888899999999999999999999999888777775321 133489999999999999888854 7789999998
Q ss_pred cCC
Q psy17798 101 NPG 103 (110)
Q Consensus 101 ~~~ 103 (110)
+++
T Consensus 185 ~~~ 187 (939)
T TIGR00461 185 DCS 187 (939)
T ss_pred cHH
Confidence 764
No 266
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=96.42 E-value=0.0063 Score=45.19 Aligned_cols=95 Identities=19% Similarity=0.201 Sum_probs=55.2
Q ss_pred CCCCCcCChHHHHHHHHHHH-HHHHHHHHhCCCCCcEE---EeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHH
Q psy17798 10 GNPHSRTHAYGWESEKAVED-ARQEIATLINCDPKEII---FTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLD 85 (110)
Q Consensus 10 ~n~~~~~~~~~~~~~~~~~~-~R~~la~~l~~~~~~i~---~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~ 85 (110)
+.|+.+ |..|-+..+.+++ +.+.+.++++++|++-. =..|++.|+..++.+|. +|||+|+.-+.+|...+.
T Consensus 51 g~pg~r-yy~G~~~id~iE~la~~ra~~lF~~~~~~w~anvqp~SGs~An~av~~aLl----~pGD~Im~l~l~~GGHls 125 (399)
T PF00464_consen 51 GYPGKR-YYGGCEYIDEIEELAIERAKELFGAEPKEWYANVQPHSGSQANLAVYMALL----KPGDTIMGLSLPHGGHLS 125 (399)
T ss_dssp EETTEE-SSSSTHHHHHHHHHHHHHHHHHHT-STTTEEEE---SSHHHHHHHHHHHHT-----TT-EEEEEEGGGT--GG
T ss_pred cCCCcc-cccCcchhhHHHHHHHHHHHHHhCCCcccceEEeecCCchHHHHHHHHHHH----hhcCcEEecChhhccccc
Confidence 455553 4445555555555 77778889999876532 23567789999999987 899999987766533221
Q ss_pred ---HHHH----HHhCCcEEEEecCC-CCcccc
Q psy17798 86 ---SCRI----LEGEGFNVLGSNPG-QGGNFL 109 (110)
Q Consensus 86 ---~~~~----l~~~g~~v~~v~~~-~~G~~~ 109 (110)
.... .....+++...++| +++.||
T Consensus 126 hg~~~~~~~~~~~~~~~~~~~y~~d~~~~~ID 157 (399)
T PF00464_consen 126 HGSSVNFKKISASGLYFESVPYPVDPDTGLID 157 (399)
T ss_dssp GT-TTSHSBSSHHHHHSEEEEEEB-TTTSSB-
T ss_pred ccccccccccccccceEEEEeeeeecCCCeEC
Confidence 1111 01124678888998 467766
No 267
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=96.19 E-value=0.046 Score=41.47 Aligned_cols=65 Identities=14% Similarity=0.151 Sum_probs=46.3
Q ss_pred cCCCCCcCChHHHHHHHHHHH-HHHHHHHHhCCCCCcEEE---eCChHHHHHHHHHHhHHhhccCCCEEEEcCC
Q psy17798 9 YGNPHSRTHAYGWESEKAVED-ARQEIATLINCDPKEIIF---TSGATESNNIAVKGVARFYKEKKKHVITTQT 78 (110)
Q Consensus 9 ~~n~~~~~~~~~~~~~~~~~~-~R~~la~~l~~~~~~i~~---t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~ 78 (110)
.+.|+++ +..|....+.+++ +++..++.+++..+.+.+ ..+++.|+..++.++. ++||+|+..+.
T Consensus 64 ~G~~g~r-~~~G~~~~d~lE~~~~~~~~~~f~~~~~~~~~nv~~~SG~~AN~av~~aL~----~pgD~Il~~d~ 132 (475)
T PLN03226 64 EGLPGAR-YYGGNEYIDQIETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFAVYTALL----QPHDRIMGLDL 132 (475)
T ss_pred CCCCCCc-CcCCChhHHHHHHHHHHHHHHHhCCCcceeEEecCcCchHHHHHHHHHHhC----CCCCEEEECCC
Confidence 3556653 3445455566665 666688889998887766 3667788888888887 89999998553
No 268
>PRK07505 hypothetical protein; Provisional
Probab=96.16 E-value=0.12 Score=38.02 Aligned_cols=77 Identities=12% Similarity=0.066 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhcc--CCCEEEEcCCCChhHHHHHHHHHhCCcEEEEe
Q psy17798 23 SEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKE--KKKHVITTQTEHKCVLDSCRILEGEGFNVLGS 100 (110)
Q Consensus 23 ~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~--~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v 100 (110)
..+...++++.++++++. +.+++++| ++|+..++..+...... +++.|+.....|+++.... .+...+.+++.+
T Consensus 89 ~~~~~~~l~~~la~~~~~--~~~~~~sG-~~a~~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~-~~~~~~~~v~~~ 164 (402)
T PRK07505 89 RSQILKDLEEALSELFGA--SVLTFTSC-SAAHLGILPLLASGHLTGGVPPHMVFDKNAHASLNILK-GICADETEVETI 164 (402)
T ss_pred hhHHHHHHHHHHHHHhCC--CEEEECCh-HHHHHHHHHHHHhcccCCCCCCEEEEchhhhHhHHhhh-hhhhcCCeEEEe
Confidence 466889999999999986 55555554 56776666543211112 2335565668888764322 222245677777
Q ss_pred cCC
Q psy17798 101 NPG 103 (110)
Q Consensus 101 ~~~ 103 (110)
|..
T Consensus 165 ~~~ 167 (402)
T PRK07505 165 DHN 167 (402)
T ss_pred CCC
Confidence 753
No 269
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=96.04 E-value=0.081 Score=39.99 Aligned_cols=68 Identities=9% Similarity=-0.018 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798 26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG 103 (110)
Q Consensus 26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~ 103 (110)
-+.++.+.+++++|.+ .+++|+++|.|++++..... ++||.| +...|-+...+ ..+..|+..+-++.+
T Consensus 72 s~~~lE~~va~~~G~~--~av~v~sGT~Al~ll~~l~l----~pGDeV--psn~~f~Tt~a--hIe~~Gav~vDi~~d 139 (450)
T TIGR02618 72 NFYHLERTVRELYGFK--YVVPTHQGRGAENLLSQIAI----KPGDYV--PGNMYFTTTRY--HQEKNGATFVDIIID 139 (450)
T ss_pred cHHHHHHHHHHHHCCC--eEEEcCCHHHHHHHHHHhCC----CCcCEE--CCceeHHHHHH--HHHhCCeEEEeeecc
Confidence 4668889999999975 69999999999998754433 899977 33444222222 124467766666443
No 270
>KOG0633|consensus
Probab=95.92 E-value=0.0044 Score=43.83 Aligned_cols=63 Identities=8% Similarity=0.073 Sum_probs=47.1
Q ss_pred CCCCcEEEeCChHHHHHHHHHHhHHhhccCC-CEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCCcccc
Q psy17798 40 CDPKEIIFTSGATESNNIAVKGVARFYKEKK-KHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQGGNFL 109 (110)
Q Consensus 40 ~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g-~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~G~~~ 109 (110)
..+|+|.++-|+.|.+..++++.. .|| ++|+.++..|.-+.... .-.+++|+.+|.+++-..+
T Consensus 84 Lt~dnic~GvGsDE~ID~iiR~~c----~PGkeKIl~cPPtysMY~v~A---~iNd~eVvkvpl~pdF~ln 147 (375)
T KOG0633|consen 84 LTSDNICVGVGSDELIDLIIRCVC----DPGKEKILDCPPTYSMYVVDA---AINDAEVVKVPLNPDFSLN 147 (375)
T ss_pred CCccceEEecCcHHHHHHHHhhee----cCCccceeecCCcceeEEEEe---ecCCceEEEecCCCCcccc
Confidence 468999999999999999999987 677 78987665554332211 2368999999998865443
No 271
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=95.67 E-value=0.016 Score=42.83 Aligned_cols=94 Identities=20% Similarity=0.221 Sum_probs=65.2
Q ss_pred CCCCCcCChHHHHHHHHHHH-HHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHH
Q psy17798 10 GNPHSRTHAYGWESEKAVED-ARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCR 88 (110)
Q Consensus 10 ~n~~~~~~~~~~~~~~~~~~-~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~ 88 (110)
+-|+.+ |.-|-+..+.++. +.+...+++|++--+|--.||+ .|+..++.++. +|||.|+.-++.|...+.-..
T Consensus 57 GyPgkR-yYgGce~VD~vE~laierak~LFga~~anVQPhSGs-~AN~av~~All----~pGDtimgm~l~~GGHltHg~ 130 (413)
T COG0112 57 GYPGKR-YYGGCEYVDEVEELAIERAKKLFGAEYANVQPHSGS-QANQAVYLALL----QPGDTIMGLDLSHGGHLTHGS 130 (413)
T ss_pred CCCCcc-ccCCCeeHHHHHHHHHHHHHHHhCCCccccCCCCch-HHHHHHHHHHc----CCCCeEecccCCCCCcccCCC
Confidence 567774 5556676667666 6667778999987787777765 66777888887 899999988777666544321
Q ss_pred HHHhCC--cEEEEecCCC-Ccccc
Q psy17798 89 ILEGEG--FNVLGSNPGQ-GGNFL 109 (110)
Q Consensus 89 ~l~~~g--~~v~~v~~~~-~G~~~ 109 (110)
..--.| ++++..|+|+ ++.||
T Consensus 131 ~v~~sG~~~~~v~Y~vd~et~~ID 154 (413)
T COG0112 131 PVNFSGKLFNVVSYGVDPETGLID 154 (413)
T ss_pred CCCccceeEEeEecccccccCccC
Confidence 111112 6788889995 58776
No 272
>PLN02452 phosphoserine transaminase
Probab=95.38 E-value=0.28 Score=36.08 Aligned_cols=73 Identities=10% Similarity=0.072 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCC-cE-EEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHH-HHHHHHHhCCcE
Q psy17798 20 GWESEKAVEDARQEIATLINCDPK-EI-IFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVL-DSCRILEGEGFN 96 (110)
Q Consensus 20 ~~~~~~~~~~~R~~la~~l~~~~~-~i-~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~-~~~~~l~~~g~~ 96 (110)
+....+.++++++.+.++++.+.+ +| ++..|+|.++..++..+. .+|+++++.. ...+- +..+..++.|..
T Consensus 47 s~~f~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~~~ea~~~nl~----~~~~~~l~~~--~G~fg~r~~~~a~~~g~~ 120 (365)
T PLN02452 47 GKEFLSIIQKAEADLRELLDIPDNYEVLFLQGGASTQFAAIPLNLC----KPGDKADFVV--TGSWSKKAAKEAKKYCKT 120 (365)
T ss_pred chHHHHHHHHHHHHHHHHhCCCCCceEEEEeCccHHHHHHHHHhcC----CCCCeEEEEE--CCHHHHHHHHHHHHhCCC
Confidence 445678999999999999998432 45 555889999999998887 6788776543 33333 333444667754
Q ss_pred EE
Q psy17798 97 VL 98 (110)
Q Consensus 97 v~ 98 (110)
.+
T Consensus 121 ~~ 122 (365)
T PLN02452 121 NV 122 (365)
T ss_pred cE
Confidence 33
No 273
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=95.20 E-value=0.1 Score=37.72 Aligned_cols=55 Identities=18% Similarity=0.346 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhcc----CCCEEEEcCCCChh
Q psy17798 25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKE----KKKHVITTQTEHKC 82 (110)
Q Consensus 25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~----~g~~vl~~~~e~ps 82 (110)
+...++.+.++++++. +++++++|+++++..+++.+.. +.. ++++|++....|+.
T Consensus 69 ~~~~~l~~~la~~~g~--~~~~~~~sg~~a~~~a~~~~~~-~~~~~~~~~~~vi~~~~~yh~ 127 (379)
T TIGR00707 69 EPQEELAEKLVEHSGA--DRVFFCNSGAEANEAALKLARK-YTGDKGKEKKKIIAFENSFHG 127 (379)
T ss_pred HHHHHHHHHHHhhCCC--CEEEEeCCcHHHHHHHHHHHHH-HhhccCCCCCeEEEECCCcCC
Confidence 3456678888888875 4999999999999999886531 112 36888887655543
No 274
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=94.98 E-value=0.12 Score=37.88 Aligned_cols=54 Identities=11% Similarity=0.206 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhCC-CCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHH
Q psy17798 28 EDARQEIATLINC-DPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVL 84 (110)
Q Consensus 28 ~~~R~~la~~l~~-~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~ 84 (110)
.++.+.++++++. ++++|+|++|+++|+..+++.+.. ..++.|+..+..|+...
T Consensus 88 ~~la~~l~~~~~~~~~~~v~~~~sgsea~~~al~~~~~---~g~~~ii~~~~~yhg~~ 142 (398)
T PRK03244 88 IALAERLVELLGAPEGGRVFFCNSGAEANEAAFKLARL---TGRTKIVAAEGGFHGRT 142 (398)
T ss_pred HHHHHHHHHhCCCCCCCEEEEeCchHHHHHHHHHHHHH---HCCCeEEEECCCcCCcc
Confidence 4677777887775 358999999999999999987652 22356666554565543
No 275
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=94.82 E-value=0.14 Score=37.43 Aligned_cols=57 Identities=16% Similarity=0.158 Sum_probs=37.8
Q ss_pred HHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCC----EEEEcCCCChhHHHHHH
Q psy17798 30 ARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKK----HVITTQTEHKCVLDSCR 88 (110)
Q Consensus 30 ~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~----~vl~~~~e~ps~~~~~~ 88 (110)
+-+.++++. ..++|+|++|+++|+..+++.+......+|+ +||+.+..||+....+.
T Consensus 78 la~~l~~~~--~~~~v~~~~sGseA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~ 138 (389)
T PRK01278 78 LAERLVENS--FADKVFFTNSGAEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATI 138 (389)
T ss_pred HHHHHHhhC--CCCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHH
Confidence 334444433 3479999999999999998876321113454 88888777777655443
No 276
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=94.77 E-value=0.096 Score=38.74 Aligned_cols=78 Identities=10% Similarity=0.071 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCcEEEE
Q psy17798 21 WESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFNVLG 99 (110)
Q Consensus 21 ~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~v~~ 99 (110)
|.+.+..+.+-+.||.+=|.- --+.+++++.|+..++..+. ++||+||.+..=|......+... ++.|++|++
T Consensus 58 Ri~NPT~~vlE~RiAaLEGG~--aa~a~aSG~AA~~~ai~~la----~aGD~iVss~~LYGGT~~lf~~tl~~~Gi~v~f 131 (426)
T COG2873 58 RIMNPTTDVLEERIAALEGGV--AALAVASGQAAITYAILNLA----GAGDNIVSSSKLYGGTYNLFSHTLKRLGIEVRF 131 (426)
T ss_pred eccCchHHHHHHHHHHhhcch--hhhhhccchHHHHHHHHHhc----cCCCeeEeeccccCchHHHHHHHHHhcCcEEEE
Confidence 344455556666777665421 12456777788888888887 89999999988888777666665 889999999
Q ss_pred ecCCC
Q psy17798 100 SNPGQ 104 (110)
Q Consensus 100 v~~~~ 104 (110)
+..++
T Consensus 132 vd~~d 136 (426)
T COG2873 132 VDPDD 136 (426)
T ss_pred eCCCC
Confidence 97664
No 277
>PRK12462 phosphoserine aminotransferase; Provisional
Probab=94.75 E-value=0.55 Score=34.64 Aligned_cols=51 Identities=8% Similarity=0.087 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCC-CcEEEe-CChHHHHHHHHHHhHHhhccCCCEEE
Q psy17798 20 GWESEKAVEDARQEIATLINCDP-KEIIFT-SGATESNNIAVKGVARFYKEKKKHVI 74 (110)
Q Consensus 20 ~~~~~~~~~~~R~~la~~l~~~~-~~i~~t-~gat~a~~~i~~~l~~~~~~~g~~vl 74 (110)
+....+.+.++++.+.++++.+. .+|+|. +|+|.++..+...+. .+|++++
T Consensus 44 s~~F~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~~ea~~~Nll----~~g~~~~ 96 (364)
T PRK12462 44 SSWFSSLLAQAEADLRDLLGIPDEYGVVFLQGGSSLQFSMIPMNFS----RPGAAAP 96 (364)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeccHHHHHHHHHHHcC----CCCCcEE
Confidence 45667889999999999999843 456555 559999999988886 6888543
No 278
>KOG0053|consensus
Probab=94.34 E-value=0.18 Score=37.61 Aligned_cols=80 Identities=14% Similarity=0.071 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCcEE
Q psy17798 19 YGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFNV 97 (110)
Q Consensus 19 ~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~v 97 (110)
.++...+....+-+.++.+-++. ..+..+++..|+..++..+. ..|++||.+..-|......+..+ .+.|++.
T Consensus 71 Ysr~~nPt~~~le~~iaal~ga~--~~l~fsSGmaA~~~al~~L~----~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~ 144 (409)
T KOG0053|consen 71 YSRSGNPTRDVLESGIAALEGAA--HALLFSSGMAAITVALLHLL----PAGDHIVATGDVYGGTLRILRKFLPKFGGEG 144 (409)
T ss_pred cccCCCCchHHHHHHHHHHhCCc--eEEEecccHHHHHHHHHHhc----CCCCcEEEeCCCcccHHHHHHHHHHHhCcee
Confidence 33333344445556666666653 37777777778888888877 79999999988888888888777 7889999
Q ss_pred EEecCCC
Q psy17798 98 LGSNPGQ 104 (110)
Q Consensus 98 ~~v~~~~ 104 (110)
..+.+++
T Consensus 145 ~~vd~~~ 151 (409)
T KOG0053|consen 145 DFVDVDD 151 (409)
T ss_pred eeechhh
Confidence 9987664
No 279
>KOG1368|consensus
Probab=94.16 E-value=0.14 Score=37.06 Aligned_cols=78 Identities=17% Similarity=0.194 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCCc
Q psy17798 27 VEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQGG 106 (110)
Q Consensus 27 ~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~G 106 (110)
..++-+.+|+++|- +-=+|++++|.++.+.++.-.- ++|.+||+.+..|--.+..-..-.-.|+.++.+...+||
T Consensus 58 t~rLE~~vA~l~GK--EAgLFv~SGTmgNllaIm~Hc~---~rg~eii~gd~~HI~~~E~gg~s~l~gv~~~tv~~e~dg 132 (384)
T KOG1368|consen 58 TNRLEQRVAELFGK--EAGLFVPSGTMGNLLAIMVHCH---QRGSEIIVGDRAHIHRYEQGGISQLAGVHVRTVKNENDG 132 (384)
T ss_pred HHHHHHHHHHHhCc--cceeeecccccccHHHHHHHhc---CCCceEEeccchheeehhccChhhhccceeEeeeeCCCC
Confidence 34566677777763 4467888889999988887763 799999987666533222211112357888888887787
Q ss_pred ccc
Q psy17798 107 NFL 109 (110)
Q Consensus 107 ~~~ 109 (110)
-++
T Consensus 133 tm~ 135 (384)
T KOG1368|consen 133 TMD 135 (384)
T ss_pred eee
Confidence 653
No 280
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase. This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.
Probab=93.78 E-value=0.35 Score=35.76 Aligned_cols=56 Identities=18% Similarity=0.143 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhH
Q psy17798 25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCV 83 (110)
Q Consensus 25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~ 83 (110)
+...+++++|++++.. .++|+|++|++||+..+++.... + ..+++||+....|+..
T Consensus 88 ~~~~~lae~l~~~~~~-~~~v~~~~sGseA~e~Alk~ar~-~-~gr~~ii~~~~~yhG~ 143 (423)
T TIGR00713 88 EAEILLAKEIISRVPS-VEMVRFVNSGTEATMSAVRLARG-Y-TGRDKIIKFEGCYHGH 143 (423)
T ss_pred HHHHHHHHHHHHhCCc-ccEEEEeCCHHHHHHHHHHHHHH-h-hCCCEEEEEcCCCCCC
Confidence 3556788888887754 36899999999999998885432 2 3557777665555553
No 281
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=93.76 E-value=0.099 Score=38.60 Aligned_cols=76 Identities=12% Similarity=0.180 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhCCCCCcEE---EeCChHHHHHHHHHHhHHhhccCCCEEEEcC-CCChhHHHHH-------HHHHhCCcE
Q psy17798 28 EDARQEIATLINCDPKEII---FTSGATESNNIAVKGVARFYKEKKKHVITTQ-TEHKCVLDSC-------RILEGEGFN 96 (110)
Q Consensus 28 ~~~R~~la~~l~~~~~~i~---~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~-~e~ps~~~~~-------~~l~~~g~~ 96 (110)
+.+-+..|+.+++.. -++ |+ ++|+|+.+++.++. +|||+++... .=|.+..... -.|++.|++
T Consensus 57 d~le~iyA~vfgaE~-ALVRpq~v-SGTHAi~~~Lfg~L----rpGD~ll~~tG~PYDTL~~VIG~~g~~~GSL~e~Gi~ 130 (403)
T PF06838_consen 57 DKLERIYADVFGAED-ALVRPQFV-SGTHAIALALFGVL----RPGDELLSITGKPYDTLEEVIGIRGNGPGSLKEFGIK 130 (403)
T ss_dssp HHHHHHHHHHCT-SE-EEEETTS--SHHHHHHHHHHHH------TT-EEEESSSS--CCHHHHHTSSSSSSSSTGGGT-E
T ss_pred HHHHHHHHHHhCchh-hhhccccc-chHHHHHHHHHhcC----CCCCeEEEcCCCchhhHHHHhCCCCCCCCChHHhCce
Confidence 344455677788642 111 22 67899999999987 8999998542 2222222221 123567999
Q ss_pred EEEecCCCCcccc
Q psy17798 97 VLGSNPGQGGNFL 109 (110)
Q Consensus 97 v~~v~~~~~G~~~ 109 (110)
...||+.+||.+|
T Consensus 131 Y~~v~L~~dg~~D 143 (403)
T PF06838_consen 131 YREVPLTEDGTID 143 (403)
T ss_dssp EEE--B-TTSSB-
T ss_pred eEEEeecCCCCcC
Confidence 9999999999876
No 282
>PLN02955 8-amino-7-oxononanoate synthase
Probab=93.74 E-value=0.88 Score=34.80 Aligned_cols=79 Identities=14% Similarity=0.190 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHh----------hccCCCEEEEcCCCChhHHHHHHHHHh
Q psy17798 23 SEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARF----------YKEKKKHVITTQTEHKCVLDSCRILEG 92 (110)
Q Consensus 23 ~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~----------~~~~g~~vl~~~~e~ps~~~~~~~l~~ 92 (110)
..+...++-+.||++++.+ ..++.+++..|+..++.++.-. ...+++.|++....|.|.....+..+.
T Consensus 145 ~~~~h~~LE~~LA~f~g~e--~all~sSGy~AN~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~ 222 (476)
T PLN02955 145 YTTYHRLLESSLADLKKKE--DCLVCPTGFAANMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAER 222 (476)
T ss_pred ChHHHHHHHHHHHHHHCCC--cEEEECChHHHHHHHHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHHhccc
Confidence 3456678999999999853 4566666667777777665200 014567888888999998877654433
Q ss_pred C-CcEEEEecCC
Q psy17798 93 E-GFNVLGSNPG 103 (110)
Q Consensus 93 ~-g~~v~~v~~~ 103 (110)
. ++++...+.+
T Consensus 223 ~~~a~~~~f~HN 234 (476)
T PLN02955 223 QGNVEVFVYRHC 234 (476)
T ss_pred cCCceEEEeCCC
Confidence 3 4777776654
No 283
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=93.63 E-value=0.2 Score=36.49 Aligned_cols=51 Identities=18% Similarity=0.340 Sum_probs=31.9
Q ss_pred HHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhcc---CCCEEEEcCCCChh
Q psy17798 30 ARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKE---KKKHVITTQTEHKC 82 (110)
Q Consensus 30 ~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~---~g~~vl~~~~e~ps 82 (110)
+.+.++++. ..++++||+|+++|+..+++.+....-+ ++++|++....|+.
T Consensus 86 la~~l~~~~--~~~~v~~~~gg~eA~~~al~~a~~~~~~~~~~~~~ii~~~~~yhg 139 (396)
T PRK02627 86 LAEKLVELS--GMDKVFFCNSGAEANEAAIKLARKYGHKKGIEKPEIITAENSFHG 139 (396)
T ss_pred HHHHHHhhc--CCCEEEECCCcHHHHHHHHHHHHHHhcccCCCCCeEEEECCCcCc
Confidence 334444443 4589999999999999999866421001 12667766555543
No 284
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=92.90 E-value=1.5 Score=33.39 Aligned_cols=65 Identities=8% Similarity=-0.027 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEe
Q psy17798 26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGS 100 (110)
Q Consensus 26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v 100 (110)
-+.++.+.+++++|.+ .+++|+++|.|+++++.... ++||.| +...|-+...+. ....|+..+-+
T Consensus 79 s~~~LE~~vAe~lG~e--~aV~v~sGTaAl~ll~~l~v----~pGd~V--p~n~~f~Tt~ah--I~~~Ga~fvDi 143 (460)
T PRK13237 79 NFYHLEETVQEYYGFK--HVVPTHQGRGAENLLSRIAI----KPGQYV--PGNMYFTTTRYH--QELNGGIFVDI 143 (460)
T ss_pred cHHHHHHHHHHHHCCC--eEEEeCCHHHHHHHHHHhCC----CCcCEE--CCccchHhhHHH--HHhCCcEEEee
Confidence 3567888999999975 59999999999998644333 789965 444444333321 24467644433
No 285
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=92.39 E-value=2 Score=30.96 Aligned_cols=74 Identities=22% Similarity=0.190 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHhC--CCCCcEEEeCChHHHHHHHHHHhHHhhccCCC--EEEEcCCCChhHHH--HHHHHHhCCcE
Q psy17798 23 SEKAVEDARQEIATLIN--CDPKEIIFTSGATESNNIAVKGVARFYKEKKK--HVITTQTEHKCVLD--SCRILEGEGFN 96 (110)
Q Consensus 23 ~~~~~~~~R~~la~~l~--~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~--~vl~~~~e~ps~~~--~~~~l~~~g~~ 96 (110)
..+.++++++.+++.-- ....+++.|.+.+.++..++.... +++. +|++++ ..|.+.+ ..+.|++.|++
T Consensus 98 ~i~~~~~a~~~ia~~~a~~i~dg~~IlTh~~S~~v~~~l~~A~----~~~k~~~V~VtE-SRP~~eG~~~ak~L~~~gI~ 172 (301)
T COG1184 98 FIDRVEKAKERIAEIGAERIHDGDVILTHSFSKTVLEVLKTAA----DRGKRFKVIVTE-SRPRGEGRIMAKELRQSGIP 172 (301)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCEEEEecCcHHHHHHHHHhh----hcCCceEEEEEc-CCCcchHHHHHHHHHHcCCc
Confidence 33455556666665432 246789999888888877777655 4444 566654 4565543 35667888998
Q ss_pred EEEec
Q psy17798 97 VLGSN 101 (110)
Q Consensus 97 v~~v~ 101 (110)
+..|+
T Consensus 173 ~~~I~ 177 (301)
T COG1184 173 VTVIV 177 (301)
T ss_pred eEEEe
Confidence 88876
No 286
>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]
Probab=91.42 E-value=1.9 Score=32.77 Aligned_cols=81 Identities=11% Similarity=0.172 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEeCCh-HHH---HHHHHHHhHHhh-ccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798 24 EKAVEDARQEIATLINCDPKEIIFTSGA-TES---NNIAVKGVARFY-KEKKKHVITTQTEHKCVLDSCRILEGEGFNVL 98 (110)
Q Consensus 24 ~~~~~~~R~~la~~l~~~~~~i~~t~ga-t~a---~~~i~~~l~~~~-~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~ 98 (110)
.+.+.++.+.+.+.-|- |.|.+.+++ .++ =-++++.+-... -..++.+|+++..|..+..... -.|++|+
T Consensus 108 l~li~~Lq~~L~~ITG~--DavsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNPASAa---m~G~~VV 182 (496)
T COG1003 108 LELIYELQEWLKEITGM--DAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNPASAA---MAGFKVV 182 (496)
T ss_pred HHHHHHHHHHHHHhcCC--ceeeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCChhhHh---hcCceEE
Confidence 34555555555555444 567776553 222 223444443211 0234689999999999886553 3699999
Q ss_pred EecCCCCcccc
Q psy17798 99 GSNPGQGGNFL 109 (110)
Q Consensus 99 ~v~~~~~G~~~ 109 (110)
.|+.+++|.+|
T Consensus 183 ~V~~~~~G~VD 193 (496)
T COG1003 183 VVKCDENGNVD 193 (496)
T ss_pred EEecCCCCCcc
Confidence 99999999987
No 287
>PRK04260 acetylornithine aminotransferase; Provisional
Probab=90.43 E-value=1.2 Score=32.35 Aligned_cols=52 Identities=23% Similarity=0.305 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhCCCCCc-EEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCCh
Q psy17798 28 EDARQEIATLINCDPKE-IIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHK 81 (110)
Q Consensus 28 ~~~R~~la~~l~~~~~~-i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~p 81 (110)
.++++.+|+.+...++. ++|++++++|+..+++.... . .++++|++.+..|+
T Consensus 69 ~~~~~~la~~l~~~~~~~~~~~~SGseA~~~Al~~ar~-~-~~~~~vv~~~~~yH 121 (375)
T PRK04260 69 NSLQEEVAQKLIGDKDYLAFFCNSGAEANEAAIKIARK-A-TGKQEIITFQNSFH 121 (375)
T ss_pred CHHHHHHHHHHhcCcCCEEEEcCccHHHHHHHHHHHHH-h-cCCCeEEEECCCcC
Confidence 34566777766444454 68999999999988876532 1 45667777655444
No 288
>COG3844 Kynureninase [Amino acid transport and metabolism]
Probab=90.24 E-value=1.1 Score=32.90 Aligned_cols=60 Identities=17% Similarity=0.188 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcC-CCChhHHHHHHH
Q psy17798 28 EDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQ-TEHKCVLDSCRI 89 (110)
Q Consensus 28 ~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~-~e~ps~~~~~~~ 89 (110)
+.+-..+|-++|+.+.|++++.+++--++.++.+..+ .++|+.||+++ ..+|+-+.+.+-
T Consensus 79 ~~lgdklApLiGA~~~Evvv~dtts~nl~k~L~aalr--~~~~r~vIv~E~~~fpTdly~a~g 139 (407)
T COG3844 79 ERLGDKLAPLIGARAGEVVVTDTTSINLFKVLAAALR--PQEGRRVIVSEGDNFPTDLYIAEG 139 (407)
T ss_pred hHHHHHhhhhhcCCCCceEEeCCcchHHHHHHHHHhc--cCCCceEEeecCCCCCcchhhhcc
Confidence 3456678888999999999999999988888777653 25678777774 455665555443
No 289
>KOG2142|consensus
Probab=89.94 E-value=0.79 Score=36.26 Aligned_cols=57 Identities=21% Similarity=0.274 Sum_probs=47.5
Q ss_pred hhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCC--CCcEEEeCChHHHHHHHHHHhHH
Q psy17798 6 TNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCD--PKEIIFTSGATESNNIAVKGVAR 64 (110)
Q Consensus 6 ~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~--~~~i~~t~gat~a~~~i~~~l~~ 64 (110)
.....|||+ ....++...+..++.|-.+..+++.. ..+++||. .++|+.+++.++++
T Consensus 46 ~~e~~nphs-~~~ts~~l~~~v~Q~r~ril~~f~tta~dy~v~lp~-~t~al~~vae~fp~ 104 (728)
T KOG2142|consen 46 SSENANPHS-HLGTSRSLARLVAQVRLRILALFNTTAFDYEVSLPA-LTEALKLVAEAFPF 104 (728)
T ss_pred ccccCCCcc-cccchHHHHHHHHHHHHHHHHHhccccccccchhHH-HHHHHHHHHHhCcc
Confidence 346688997 67778888889999998888899854 46799999 99999999999985
No 290
>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]
Probab=89.82 E-value=0.85 Score=33.22 Aligned_cols=76 Identities=12% Similarity=0.101 Sum_probs=48.7
Q ss_pred HHHHHHHHHhCCCCC--cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCC-hhHHHH-------HHHHHhCCcEEE
Q psy17798 29 DARQEIATLINCDPK--EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEH-KCVLDS-------CRILEGEGFNVL 98 (110)
Q Consensus 29 ~~R~~la~~l~~~~~--~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~-ps~~~~-------~~~l~~~g~~v~ 98 (110)
.+-+.-|+.+++... ..-|.+| |+|+..++.++. +|||+.+.-...- ...... ...|+..|+..+
T Consensus 69 tLe~vyA~vf~aE~a~VRpq~isG-THAI~~aLfg~L----RpgDell~i~G~PYDTLeevIG~rg~~~gSL~dfgi~Y~ 143 (416)
T COG4100 69 TLERVYAQVFGAEAALVRPQIISG-THAIACALFGIL----RPGDELLYITGSPYDTLEEVIGLRGEGQGSLKDFGIKYK 143 (416)
T ss_pred HHHHHHHHHhccccceeeeeeecc-hhHHHHHHHhcc----CCCCeEEEecCCcchhHHHHhccCCCCcccHHHhCccee
Confidence 344456677886432 3445554 688999998887 8999987543221 111111 123556788899
Q ss_pred EecCCCCcccc
Q psy17798 99 GSNPGQGGNFL 109 (110)
Q Consensus 99 ~v~~~~~G~~~ 109 (110)
-||+.++|.+|
T Consensus 144 ~v~Lt~~gkiD 154 (416)
T COG4100 144 AVPLTADGKID 154 (416)
T ss_pred ecccccCCccc
Confidence 99999999887
No 291
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=89.49 E-value=4.3 Score=30.33 Aligned_cols=72 Identities=15% Similarity=0.253 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEec
Q psy17798 22 ESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSN 101 (110)
Q Consensus 22 ~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~ 101 (110)
...+...++-+.||+|+|.+ +-++|++|- .|+.-++.++. +++|.|+.....|-|.....+ -.+++++..+
T Consensus 81 G~~~~h~~LE~~lA~f~g~e-~al~f~SGy-~AN~~~i~~l~----~~~dli~~D~lnHASiidG~r---ls~a~~~~f~ 151 (388)
T COG0156 81 GTSDLHVELEEELADFLGAE-AALLFSSGF-VANLGLLSALL----KKGDLIFSDELNHASIIDGIR---LSRAEVRRFK 151 (388)
T ss_pred CCcHHHHHHHHHHHHHhCCC-cEEEEcccc-hhHHHHHHHhc----CCCcEEEEechhhhhHHHHHH---hCCCcEEEec
Confidence 34567788999999999975 567777775 45666777777 789999999999998766553 2456666555
Q ss_pred C
Q psy17798 102 P 102 (110)
Q Consensus 102 ~ 102 (110)
.
T Consensus 152 H 152 (388)
T COG0156 152 H 152 (388)
T ss_pred C
Confidence 4
No 292
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=89.35 E-value=1.7 Score=31.82 Aligned_cols=56 Identities=14% Similarity=0.226 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhh-----cc-CCCEEEEcCCCChhH
Q psy17798 26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFY-----KE-KKKHVITTQTEHKCV 83 (110)
Q Consensus 26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~-----~~-~g~~vl~~~~e~ps~ 83 (110)
...++-+.++++.+. +.++|++++++|+..+++.+.... .. .+++|++....+++.
T Consensus 84 ~~~~l~~~l~~~~~~--~~~~~~~SGs~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~ 145 (401)
T PRK00854 84 QLAPLYEELAALTGS--HKVLPMNSGAEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGR 145 (401)
T ss_pred HHHHHHHHHHhhCCC--CEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCc
Confidence 445566677777654 589999999999999998774210 01 235677666555543
No 293
>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.
Probab=88.89 E-value=2.4 Score=31.25 Aligned_cols=65 Identities=14% Similarity=0.215 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhC-C--CCCcEEEeCChHHHHHHHHHHhHHh--hccCCCEEEEcCCCChhHHHHHHHH
Q psy17798 26 AVEDARQEIATLIN-C--DPKEIIFTSGATESNNIAVKGVARF--YKEKKKHVITTQTEHKCVLDSCRIL 90 (110)
Q Consensus 26 ~~~~~R~~la~~l~-~--~~~~i~~t~gat~a~~~i~~~l~~~--~~~~g~~vl~~~~e~ps~~~~~~~l 90 (110)
.+++.-+.|=+.+| + +..-|+|+.|+|+.++.++.+|... ...+--+||.+..=||++...-..+
T Consensus 47 eL~~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~qt~~f 116 (363)
T PF04864_consen 47 ELERQIRRLHRVVGNAVTDGRYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSSYPEQTDFF 116 (363)
T ss_dssp HHHHHHHHHHHHH-SB--TTSEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHHHCCCT
T ss_pred HHHHHHHHHHHHhccccccCcEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccchHHHHHhc
Confidence 33444444444444 3 4557999999999999999999743 1112237887777777777655444
No 294
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=87.88 E-value=2.2 Score=30.91 Aligned_cols=54 Identities=19% Similarity=0.287 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhCC-C-CCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhH
Q psy17798 28 EDARQEIATLINC-D-PKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCV 83 (110)
Q Consensus 28 ~~~R~~la~~l~~-~-~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~ 83 (110)
.+.++.+++++.. . .+.++|++++++|+..+++.... . ..+++|++.+..+++.
T Consensus 70 ~~~~~~la~~l~~~~~~~~~~~~~sG~~a~~~A~~~a~~-~-~g~~~vi~~~~~~Hg~ 125 (377)
T PRK02936 70 NSLQEEVASLLAENSAGDLVFFCNSGAEANEAALKLARK-H-TGKSKIVTFEQSFHGR 125 (377)
T ss_pred CHHHHHHHHHHHhcCCCCEEEEeCCcHHHHHHHHHHHHH-h-cCCCeEEEECCCcCCC
Confidence 3455666666653 2 36899999999999999885321 1 3446677766555543
No 295
>KOG1383|consensus
Probab=87.87 E-value=3.7 Score=31.41 Aligned_cols=77 Identities=19% Similarity=0.105 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCcE-EEeCChHHHHHHHHHHhHHhhcc----CCCEEEEcCCCChhHHHHHHHH-HhCCcEE
Q psy17798 24 EKAVEDARQEIATLINCDPKEI-IFTSGATESNNIAVKGVARFYKE----KKKHVITTQTEHKCVLDSCRIL-EGEGFNV 97 (110)
Q Consensus 24 ~~~~~~~R~~la~~l~~~~~~i-~~t~gat~a~~~i~~~l~~~~~~----~g~~vl~~~~e~ps~~~~~~~l-~~~g~~v 97 (110)
.....++-..++.+++++++.+ .-|+|+||++-.....+.....+ ...+|+++ .+...+|+.. +..++++
T Consensus 119 ~~~e~~~Vnm~~~L~~~~~~~~g~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~----~~v~~a~eK~a~yf~v~l 194 (491)
T KOG1383|consen 119 RKLEAECVNMIANLFNAPSDSCGCGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTP----QNVHAAFEKAARYFEVEL 194 (491)
T ss_pred HHHHHHHHHHHHHHhcCCccccCccccccchHHHHHHHHHHHHHHhccCCCCccccch----HHHHHHHHHHHhhEEEEE
Confidence 3456677788999999987654 56788999966665555421112 12345443 2334556666 5578999
Q ss_pred EEecCCC
Q psy17798 98 LGSNPGQ 104 (110)
Q Consensus 98 ~~v~~~~ 104 (110)
+.||+++
T Consensus 195 ~~V~~~~ 201 (491)
T KOG1383|consen 195 REVPLDE 201 (491)
T ss_pred Eeeeccc
Confidence 9999995
No 296
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=87.58 E-value=2.2 Score=32.88 Aligned_cols=53 Identities=25% Similarity=0.280 Sum_probs=34.8
Q ss_pred cCCCCCcCChHHHHHHHHHHH-HHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhH
Q psy17798 9 YGNPHSRTHAYGWESEKAVED-ARQEIATLINCDPKEIIFTSGATESNNIAVKGVA 63 (110)
Q Consensus 9 ~~n~~~~~~~~~~~~~~~~~~-~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~ 63 (110)
.+-|+.. |+.|-+..+.++. +.+.+.++|+++.-+|=.-||+ .|+..++.++.
T Consensus 79 eg~pg~r-yy~g~~~~d~ie~l~~~ra~~lf~a~~anvqp~Sg~-~An~~v~~all 132 (493)
T PRK13580 79 EGTPGHR-FYAGCQNVDTVEWEAAEHAKELFGAEHAYVQPHSGA-DANLVAFWAIL 132 (493)
T ss_pred CCCCCcc-ccCCCchHHHHHHHHHHHHHHHhCCCcccccCCCcH-HHHHHHHHHHh
Confidence 3556663 4445554555544 7777778999987777666654 56777777776
No 297
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=87.40 E-value=3.5 Score=27.69 Aligned_cols=59 Identities=10% Similarity=0.135 Sum_probs=41.1
Q ss_pred CCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCc-EEEEecCC
Q psy17798 42 PKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGF-NVLGSNPG 103 (110)
Q Consensus 42 ~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~-~v~~v~~~ 103 (110)
||-|++ .|+ ..+..++..... .+++|.++|....--.+...+...+++.|. +++.+-+.
T Consensus 103 ~daiFI-GGg-~~i~~ile~~~~-~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ei~~v~is 162 (187)
T COG2242 103 PDAIFI-GGG-GNIEEILEAAWE-RLKPGGRLVANAITLETLAKALEALEQLGGREIVQVQIS 162 (187)
T ss_pred CCEEEE-CCC-CCHHHHHHHHHH-HcCcCCeEEEEeecHHHHHHHHHHHHHcCCceEEEEEee
Confidence 444544 444 566666666543 458999999887777777788888888888 77766543
No 298
>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional
Probab=87.14 E-value=3.2 Score=30.52 Aligned_cols=53 Identities=19% Similarity=0.249 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHH
Q psy17798 28 EDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVL 84 (110)
Q Consensus 28 ~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~ 84 (110)
.++-+.++++.+ .+.++|++++++|+..+++.... . ..+++|++....|+...
T Consensus 69 ~~la~~l~~~~~--~~~v~~~~SGseA~e~Alklar~-~-~gr~~Ii~~~~syHG~t 121 (364)
T PRK04013 69 EEMLEELSKWVN--YEYVYMGNSGTEAVEAALKFARL-Y-TGRKEIIAMTNAFHGRT 121 (364)
T ss_pred HHHHHHHHhhcC--CCEEEEeCchHHHHHHHHHHHHH-H-hCCCEEEEECCccccCc
Confidence 344455555543 36899999999999999887653 1 34478887766565543
No 299
>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=86.71 E-value=3.8 Score=30.58 Aligned_cols=55 Identities=11% Similarity=0.110 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHH
Q psy17798 27 VEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVL 84 (110)
Q Consensus 27 ~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~ 84 (110)
..++++.+++.+. ..+.+.|++++++|+..+++.... + ..+++||.....|+...
T Consensus 92 ~~~la~~L~~~~~-~~~~v~~~~sGseA~e~Aik~a~~-~-~g~~~ii~~~~~yHG~t 146 (426)
T PRK00062 92 EVELAELVIELVP-SIEMVRMVNSGTEATMSAIRLARG-Y-TGRDKIIKFEGCYHGHA 146 (426)
T ss_pred HHHHHHHHHHhCC-CCCEEEEecCHHHHHHHHHHHHHH-H-hCCCeEEEEcCccCCch
Confidence 3456666665542 357899999999999999887542 1 34567777666666643
No 300
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=86.60 E-value=0.94 Score=26.37 Aligned_cols=24 Identities=25% Similarity=0.562 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEeC
Q psy17798 26 AVEDARQEIATLINCDPKEIIFTS 49 (110)
Q Consensus 26 ~~~~~R~~la~~l~~~~~~i~~t~ 49 (110)
--.+.|+.||++++++++.|++-+
T Consensus 14 sr~ei~~klA~~~~~~~~~ivv~~ 37 (84)
T PF01282_consen 14 SRKEIREKLAAMLNVDPDLIVVFG 37 (84)
T ss_dssp -HHHHHHHHHHHHTSTGCCEEEEE
T ss_pred CHHHHHHHHHHHhCCCCCeEEEec
Confidence 345899999999999999987543
No 301
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=83.59 E-value=7.9 Score=28.92 Aligned_cols=54 Identities=15% Similarity=0.129 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChh
Q psy17798 27 VEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKC 82 (110)
Q Consensus 27 ~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps 82 (110)
..++-+.|++++.-..+.+.|+++++||+..+++... .. ..+.+|+.-...|+.
T Consensus 88 ~~~la~~L~~~~~~~~~~v~f~~SGseA~e~AlklAr-~~-tgr~~ii~~~~~yHG 141 (433)
T PRK08117 88 ILKLAEELAEITPGGLDCFFFSNSGAEAIEGALKLAK-HV-TKRPYIISFTGCFHG 141 (433)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHH-Hh-cCCCeEEEECCCcCC
Confidence 3455566666653334689999999999999888432 22 344566654444443
No 302
>PRK10494 hypothetical protein; Provisional
Probab=83.55 E-value=7.2 Score=27.37 Aligned_cols=31 Identities=19% Similarity=0.341 Sum_probs=21.9
Q ss_pred CEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798 71 KHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG 103 (110)
Q Consensus 71 ~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~ 103 (110)
.-+++|..-| ..++...+++.|+++.+.|+|
T Consensus 180 ~iiLVTsa~H--m~RA~~~f~~~Gl~v~p~Ptd 210 (259)
T PRK10494 180 PFLLVTSASH--LPRAMIFFQQEGLNPLPAPAN 210 (259)
T ss_pred CEEEECCHHH--HHHHHHHHHHcCCceeecCCc
Confidence 3456554333 366777778899999999986
No 303
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=83.04 E-value=5.2 Score=29.18 Aligned_cols=57 Identities=16% Similarity=0.257 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHh-hc-----cCCCEEEEcCCCChhH
Q psy17798 25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARF-YK-----EKKKHVITTQTEHKCV 83 (110)
Q Consensus 25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~-~~-----~~g~~vl~~~~e~ps~ 83 (110)
+...++++.++++++. +.++|++++++|+..+++..... .. .++++|+..+..+++.
T Consensus 73 ~~~~~~~~~l~~~~~~--~~~~~~~SGs~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~ 135 (400)
T PTZ00125 73 DVLGLAEKYITDLFGY--DKVLPMNSGAEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGR 135 (400)
T ss_pred HHHHHHHHHHHhCCCC--CEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCc
Confidence 3566778888877654 58999999999999998865310 00 1346677666554443
No 304
>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]
Probab=83.03 E-value=16 Score=27.18 Aligned_cols=60 Identities=22% Similarity=0.274 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCC-cEEEe-CChHHHHHHHHHHhHHhhccCCC--EEEEcCCCChhH
Q psy17798 20 GWESEKAVEDARQEIATLINCDPK-EIIFT-SGATESNNIAVKGVARFYKEKKK--HVITTQTEHKCV 83 (110)
Q Consensus 20 ~~~~~~~~~~~R~~la~~l~~~~~-~i~~t-~gat~a~~~i~~~l~~~~~~~g~--~vl~~~~e~ps~ 83 (110)
+......+.++++.+.++|+.+.+ +|+|. .|+|..+..+...|. .++. .|.+...+.-+.
T Consensus 45 sk~~~~v~~~a~~~lreLl~iPd~Y~VlflqGGat~qf~~~p~nLl----~~~~~~yv~~g~Ws~~a~ 108 (365)
T COG1932 45 SKEFKNVLEEAEKDLRELLNIPDDYKVLFLQGGATGQFAMAPMNLL----GKRGTDYVDTGAWSEFAI 108 (365)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCccHHHHHHHHHhhh----cccCceeEeeeehhHhHH
Confidence 456678899999999999999654 67777 557888888888876 3443 466655544443
No 305
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]
Probab=82.85 E-value=19 Score=27.46 Aligned_cols=79 Identities=19% Similarity=0.195 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCcEEEEecC
Q psy17798 24 EKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFNVLGSNP 102 (110)
Q Consensus 24 ~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~v~~v~~ 102 (110)
.+.+-+.-..++++.|.+-.+--+--++|.+-..++.+.... ..++++|+++..-||.....++.. +..|++++.++.
T Consensus 119 LqaLfefQtlv~dLTGm~VANASm~DeaTAaAEAm~ma~r~~-k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~ 197 (450)
T COG0403 119 LEALFEFQTLVADLTGLDVANASMLDEATAAAEAMLMAKRVT-KKKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDA 197 (450)
T ss_pred HHHHHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHhh-cCcCceEEecCCCCHHHHHHHHhhcccCceEEEEecc
Confidence 355667778899999877655555556665555444443310 133689999999999999888877 567899888877
Q ss_pred C
Q psy17798 103 G 103 (110)
Q Consensus 103 ~ 103 (110)
+
T Consensus 198 ~ 198 (450)
T COG0403 198 D 198 (450)
T ss_pred c
Confidence 6
No 306
>KOG1403|consensus
Probab=81.40 E-value=4.5 Score=29.63 Aligned_cols=46 Identities=22% Similarity=0.317 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEE
Q psy17798 26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVI 74 (110)
Q Consensus 26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl 74 (110)
..+.+|+..+.+=+ -+-+.|+++++||+.++++.. +.|.+..|.|.
T Consensus 88 lv~cA~~l~stlPe--Lsvc~F~NSGSEANDLALRLA-R~ftkhqDvIt 133 (452)
T KOG1403|consen 88 LVQCARTLTSTLPE--LSVCFFVNSGSEANDLALRLA-RNFTKHQDVIT 133 (452)
T ss_pred HHHHHHHHhhcCCC--ceEEEEecCCchhhHHHHHHH-HhhcccCceEE
Confidence 33444444443322 356899999999999998854 44545556555
No 307
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=80.97 E-value=9.6 Score=28.68 Aligned_cols=50 Identities=18% Similarity=0.344 Sum_probs=31.4
Q ss_pred HHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhcc--CCCEEEEcCCCC
Q psy17798 29 DARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKE--KKKHVITTQTEH 80 (110)
Q Consensus 29 ~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~--~g~~vl~~~~e~ 80 (110)
++-+.+++... ..|.|+|+++++||+..++..... +.. .+.+||...-.+
T Consensus 88 ~la~~L~~~s~-~~d~vff~NSGaEA~EaAiKlARk-~~~~~~k~~Iia~~nsF 139 (404)
T COG4992 88 ELAEKLVELSP-FADRVFFCNSGAEANEAALKLARK-YTGDPEKSKIIAFENSF 139 (404)
T ss_pred HHHHHHHhhCc-cccEEEEcCCcHHHHHHHHHHHHH-HcCCCCCcEEEEEcCCc
Confidence 34444444444 478999999999999998876542 211 234676554333
No 308
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=80.33 E-value=14 Score=25.03 Aligned_cols=57 Identities=14% Similarity=0.214 Sum_probs=27.0
Q ss_pred CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798 43 KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG 103 (110)
Q Consensus 43 ~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~ 103 (110)
..+++|.++...=..++..+. +.|-+|++..-..+........++..|.++..++.|
T Consensus 11 k~vlItGa~g~iG~~ia~~l~----~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D 67 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLA----QAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFD 67 (255)
T ss_pred CEEEEECCcchHHHHHHHHHH----HcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEcc
Confidence 455555554433333334443 566666665443333333333344445556655554
No 309
>PRK12403 putative aminotransferase; Provisional
Probab=80.07 E-value=8.9 Score=29.07 Aligned_cols=37 Identities=19% Similarity=0.339 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhH
Q psy17798 27 VEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVA 63 (110)
Q Consensus 27 ~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~ 63 (110)
..++-+.+++++..+-+.++|+++++||+..+++...
T Consensus 100 ~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AiklAr 136 (460)
T PRK12403 100 VIELSELLFSLLPGHYSHAIYTNSGSEANEVLIRTVR 136 (460)
T ss_pred HHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHH
Confidence 3445555666655334789999999999999888664
No 310
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=79.78 E-value=13 Score=25.43 Aligned_cols=36 Identities=8% Similarity=0.058 Sum_probs=16.1
Q ss_pred cCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798 68 EKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG 103 (110)
Q Consensus 68 ~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~ 103 (110)
+.|.+|++..-...........++..|.++..+++|
T Consensus 32 ~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 67 (265)
T PRK07097 32 KAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCD 67 (265)
T ss_pred HCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcC
Confidence 455555554433333333333333445555555544
No 311
>PRK05876 short chain dehydrogenase; Provisional
Probab=79.48 E-value=14 Score=25.56 Aligned_cols=36 Identities=19% Similarity=0.315 Sum_probs=15.9
Q ss_pred cCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798 68 EKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG 103 (110)
Q Consensus 68 ~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~ 103 (110)
+.|.+|++.....+........++..|.++..+++|
T Consensus 28 ~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~D 63 (275)
T PRK05876 28 RRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCD 63 (275)
T ss_pred HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 455555554433333333333333345455555444
No 312
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=79.45 E-value=16 Score=24.61 Aligned_cols=56 Identities=18% Similarity=0.181 Sum_probs=24.2
Q ss_pred cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798 44 EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG 103 (110)
Q Consensus 44 ~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~ 103 (110)
.+++|.+++..=..++..|. +.|.+|++..-..+........++..+.++..++.|
T Consensus 11 ~~lItGas~giG~~ia~~L~----~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~D 66 (254)
T PRK08085 11 NILITGSAQGIGFLLATGLA----EYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFN 66 (254)
T ss_pred EEEEECCCChHHHHHHHHHH----HcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecC
Confidence 44555444332223333333 456666655443333333333333334445555444
No 313
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=79.02 E-value=2.9 Score=25.20 Aligned_cols=22 Identities=23% Similarity=0.573 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhCCCCCcEEEeC
Q psy17798 28 EDARQEIATLINCDPKEIIFTS 49 (110)
Q Consensus 28 ~~~R~~la~~l~~~~~~i~~t~ 49 (110)
.+.|+.||++++++++.|++-.
T Consensus 34 ~eirekLa~~~~~~~~~vvv~~ 55 (99)
T PRK01178 34 KDVRKKLAAMLNADKELVVVRK 55 (99)
T ss_pred HHHHHHHHHHHCcCCCEEEEEc
Confidence 4899999999999998877543
No 314
>COG2004 RPS24A Ribosomal protein S24E [Translation, ribosomal structure and biogenesis]
Probab=79.00 E-value=2.8 Score=25.58 Aligned_cols=26 Identities=19% Similarity=0.411 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhCCCCCcEEEeCChHH
Q psy17798 28 EDARQEIATLINCDPKEIIFTSGATE 53 (110)
Q Consensus 28 ~~~R~~la~~l~~~~~~i~~t~gat~ 53 (110)
.+.|+.||+.++++++.|++-.--|+
T Consensus 35 ~evrekla~~l~~d~e~VvV~~ikt~ 60 (107)
T COG2004 35 KEVREKLAAMLGADKELVVVDYIKTE 60 (107)
T ss_pred HHHHHHHHHHHCCCcceEEEEehhhh
Confidence 48999999999999999886554443
No 315
>TIGR01885 Orn_aminotrans ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.
Probab=78.85 E-value=10 Score=27.87 Aligned_cols=55 Identities=9% Similarity=0.187 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhh------ccCCCEEEEcCCCCh
Q psy17798 25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFY------KEKKKHVITTQTEHK 81 (110)
Q Consensus 25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~------~~~g~~vl~~~~e~p 81 (110)
+...++.+.++++++ .+.++|++++++|+..+++.+.... ...++.|+.....|+
T Consensus 79 ~~~~~l~~~l~~~~~--~~~~~~~~SGs~A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yh 139 (401)
T TIGR01885 79 DVFGEFAEYVTKLFG--YDKVLPMNTGAEAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFH 139 (401)
T ss_pred HHHHHHHHHHHhhcC--CCEEEEeCccHHHHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcC
Confidence 345667777888776 3689999999999999988753210 012456665555544
No 316
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=78.60 E-value=9.1 Score=28.10 Aligned_cols=54 Identities=15% Similarity=0.203 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhh-c-----cCCCEEEEcCCCChhH
Q psy17798 28 EDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFY-K-----EKKKHVITTQTEHKCV 83 (110)
Q Consensus 28 ~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~-~-----~~g~~vl~~~~e~ps~ 83 (110)
.++-+.++++.+ .+.++|++++++|+..+++...... . ..+++||.....+++.
T Consensus 85 ~~l~~~l~~~~~--~~~~~~~~SGseA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~ 144 (396)
T PRK04073 85 GPWYEKVAKLTG--KDMVLPMNTGAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGR 144 (396)
T ss_pred HHHHHHHHhcCC--CCeEEEcCChHHHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCC
Confidence 345555655543 3689999999999998888653210 0 1236777766555543
No 317
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=78.06 E-value=13 Score=22.50 Aligned_cols=64 Identities=14% Similarity=0.117 Sum_probs=44.3
Q ss_pred HHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798 32 QEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG 103 (110)
Q Consensus 32 ~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~ 103 (110)
+.+++-+|.+. -=.+-+|--|+-..+++-.+ .+|++-+.++|.......-.++.|+.|...|--
T Consensus 26 ~~i~~~~gI~d-iN~IKPGIgEaTRvLLRRvP-------~~vLVr~~~~pd~~Hl~~LA~ekgVpVe~~~d~ 89 (100)
T PF15608_consen 26 ERIAERYGISD-INLIKPGIGEATRVLLRRVP-------WKVLVRDPDDPDLAHLLLLAEEKGVPVEVYPDL 89 (100)
T ss_pred HHHHHHhCCCC-cccccCChhHHHHHHHhcCC-------CEEEECCCCCccHHHHHHHHHHcCCcEEEeCCC
Confidence 44566667642 23567898898777766543 579999888988665554447889999887743
No 318
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=77.40 E-value=13 Score=26.31 Aligned_cols=79 Identities=16% Similarity=0.176 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHhC-CCCCc--EEEeCChHHHHHHHHHHhHHhhccCC-CEEEEcCCC-ChhHHHHHHHHHhCCc-EE
Q psy17798 24 EKAVEDARQEIATLIN-CDPKE--IIFTSGATESNNIAVKGVARFYKEKK-KHVITTQTE-HKCVLDSCRILEGEGF-NV 97 (110)
Q Consensus 24 ~~~~~~~R~~la~~l~-~~~~~--i~~t~gat~a~~~i~~~l~~~~~~~g-~~vl~~~~e-~ps~~~~~~~l~~~g~-~v 97 (110)
.+-++++-+.|.+.+. ..+++ |+++.|+.+.-|.....|...+.+.+ ++|.+..+| +|+......++++.|+ +|
T Consensus 121 ~~D~~~va~aL~~~~~~~~~~~a~vlmGHGt~h~an~~Y~~l~~~l~~~~~~~v~vgtvEG~P~~~~vi~~L~~~g~k~V 200 (262)
T PF06180_consen 121 PEDYEAVAEALAEEFPKKRKDEAVVLMGHGTPHPANAAYSALQAMLKKHGYPNVFVGTVEGYPSLEDVIARLKKKGIKKV 200 (262)
T ss_dssp HHHHHHHHHHHHCCS-TT-TTEEEEEEE---SCHHHHHHHHHHHHHHCCT-TTEEEEETTSSSBHHHHHHHHHHHT-SEE
T ss_pred hHHHHHHHHHHHHhccccCCCCEEEEEeCCCCCCccHHHHHHHHHHHhCCCCeEEEEEeCCCCCHHHHHHHHHhcCCCeE
Confidence 3455566666666554 33443 66778877776666655543222333 455555555 8998888888877775 46
Q ss_pred EEecC
Q psy17798 98 LGSNP 102 (110)
Q Consensus 98 ~~v~~ 102 (110)
..+|+
T Consensus 201 ~L~Pl 205 (262)
T PF06180_consen 201 HLIPL 205 (262)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 66664
No 319
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=77.37 E-value=16 Score=27.19 Aligned_cols=58 Identities=10% Similarity=0.126 Sum_probs=36.2
Q ss_pred HHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhc-----cCCCEEEEcCCCChhHHHHH
Q psy17798 29 DARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYK-----EKKKHVITTQTEHKCVLDSC 87 (110)
Q Consensus 29 ~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~-----~~g~~vl~~~~e~ps~~~~~ 87 (110)
++.+.|++.+....+.+.|+++++||+..+++.... +. ..+.+||.-...|+.....+
T Consensus 89 ~la~~l~~~~p~~~~~v~f~~sGseA~e~A~klar~-~~~~~~~~~r~~ii~~~~~yHG~t~~~ 151 (423)
T PRK05964 89 RLAQRLVALTPGGLDHVFFSDSGSVAVEVALKMALQ-YWRNRGEPGRSRFLSLRGGYHGDTIGT 151 (423)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHH-HHHhcCCCCCcEEEEEcCCcCCccHHH
Confidence 445555555432346899999999999998875431 10 13457777666666654433
No 320
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=77.30 E-value=27 Score=26.25 Aligned_cols=58 Identities=10% Similarity=0.005 Sum_probs=34.6
Q ss_pred CCcEEE-eCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecC
Q psy17798 42 PKEIIF-TSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNP 102 (110)
Q Consensus 42 ~~~i~~-t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~ 102 (110)
++.++. ++++..++.++..+-.. .=.-.|+++..+-+....-...++..|++|+.++.
T Consensus 110 ~~~vI~etgsGnhG~A~A~aaa~~---Gl~~~I~m~~~d~~~q~~nv~~mr~~GAeVi~v~~ 168 (402)
T PRK13028 110 KKRLIAETGAGQHGVATATAAALF---GLECEIYMGEVDIERQHPNVFRMKLLGAEVVPVTR 168 (402)
T ss_pred CCeEEEecCcHHHHHHHHHHHHHc---CCCEEEEECCCcchhhHHHHHHHHHcCCEEEEEcC
Confidence 456776 56677777776655432 33456776653333212223455778999999874
No 321
>PRK03715 argD acetylornithine transaminase protein; Provisional
Probab=75.97 E-value=9.8 Score=28.18 Aligned_cols=33 Identities=21% Similarity=0.262 Sum_probs=23.8
Q ss_pred HHHHHHHhCC--CCCcEEEeCChHHHHHHHHHHhH
Q psy17798 31 RQEIATLINC--DPKEIIFTSGATESNNIAVKGVA 63 (110)
Q Consensus 31 R~~la~~l~~--~~~~i~~t~gat~a~~~i~~~l~ 63 (110)
...+|+.+.. ..+.++|+++++||+..+++...
T Consensus 80 ~~~la~~l~~~~~~~~v~f~~SGseA~e~Aik~ar 114 (395)
T PRK03715 80 MAKLAGLLTQHSCFDKVFFANSGAEANEGAIKLAR 114 (395)
T ss_pred HHHHHHHHhhccCCCEEEEeCCcHHHHHHHHHHHH
Confidence 3444554442 24689999999999999988764
No 322
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=75.77 E-value=14 Score=27.35 Aligned_cols=53 Identities=13% Similarity=0.229 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhc-----cCCCEEEEcCCCChhH
Q psy17798 28 EDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYK-----EKKKHVITTQTEHKCV 83 (110)
Q Consensus 28 ~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~-----~~g~~vl~~~~e~ps~ 83 (110)
.++.+.++++.+ .+.++|+++++||+..+++.... +. ..+.+|+.....|+..
T Consensus 84 ~~la~~l~~~~~--~~~v~~~~sGseA~e~Alk~ar~-~~~~~~~~~r~~ii~~~~~yHG~ 141 (406)
T PRK12381 84 LRLAKKLIDATF--ADRVFFCNSGAEANEAALKLARK-YAHDRYGSHKSGIVAFKNAFHGR 141 (406)
T ss_pred HHHHHHHHhhCC--CCeEEEcCCcHHHHHHHHHHHHH-HHhhcCCCCCCeEEEECCCcCCc
Confidence 455666666543 47999999999999999886532 11 1345676644444443
No 323
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=75.53 E-value=6.8 Score=28.74 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=20.9
Q ss_pred CCCCcEEEeCChHHHHHHHHHHhH
Q psy17798 40 CDPKEIIFTSGATESNNIAVKGVA 63 (110)
Q Consensus 40 ~~~~~i~~t~gat~a~~~i~~~l~ 63 (110)
..+++|.+|+|++.+..-++..+.
T Consensus 95 it~~NIalTnGSQs~fFYlfNlF~ 118 (417)
T COG3977 95 ITAQNIALTNGSQSAFFYLFNLFA 118 (417)
T ss_pred CccceeeecCCccchHHHHHHHhc
Confidence 578999999999999988887765
No 324
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=75.31 E-value=22 Score=24.10 Aligned_cols=62 Identities=23% Similarity=0.180 Sum_probs=28.4
Q ss_pred HhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798 37 LINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG 103 (110)
Q Consensus 37 ~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~ 103 (110)
++......+++|.++...=..+++.+. +.|-+|++.... .........+...+.++..++.|
T Consensus 10 ~~~l~~k~vlItGas~gIG~~ia~~l~----~~G~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D 71 (258)
T PRK06935 10 FFSLDGKVAIVTGGNTGLGQGYAVALA----KAGADIIITTHG-TNWDETRRLIEKEGRKVTFVQVD 71 (258)
T ss_pred cccCCCCEEEEeCCCchHHHHHHHHHH----HCCCEEEEEeCC-cHHHHHHHHHHhcCCceEEEEcC
Confidence 333344456666555543334444444 567776654333 22122222233344455555554
No 325
>PRK00084 ispF 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed
Probab=75.19 E-value=2.5 Score=27.62 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHH
Q psy17798 23 SEKAVEDARQEIATLINCDPKEIIFTSGATESNN 56 (110)
Q Consensus 23 ~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~ 56 (110)
..+..++.|+.|++.|++++++|-+..-++|.+.
T Consensus 107 i~p~~~~m~~~la~~L~i~~~~V~iKatT~E~lg 140 (159)
T PRK00084 107 MAPHIEEMRANIAEDLGIPLDDVNVKATTTEKLG 140 (159)
T ss_pred chHHHHHHHHHHHHHhCCCcceEEEEEecCCCCC
Confidence 4567889999999999999999999999888754
No 326
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=74.90 E-value=16 Score=25.96 Aligned_cols=57 Identities=12% Similarity=0.054 Sum_probs=27.3
Q ss_pred cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecC
Q psy17798 44 EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNP 102 (110)
Q Consensus 44 ~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~ 102 (110)
..+++.|++.++..+.-++.-..+.=.-.|+++. +.++ ......++..|++|+.++-
T Consensus 57 ~~vv~~g~ssGN~g~alA~~a~~~G~~~~ivvp~-~~~~-~~~~~~~~~~Ga~v~~v~~ 113 (311)
T TIGR01275 57 DTVITVGAIQSNHARATALAAKKLGLDAVLVLRE-KEEL-NGNLLLDKLMGAETRVYSA 113 (311)
T ss_pred CEEEEcCCchhHHHHHHHHHHHHhCCceEEEecC-CccC-CCCHHHHHHcCCEEEEECc
Confidence 4566766555555444443322112234566544 2111 1111223568999988764
No 327
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=74.82 E-value=17 Score=26.28 Aligned_cols=56 Identities=11% Similarity=0.231 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHh----hccCCCEEEEcCCCChh
Q psy17798 27 VEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARF----YKEKKKHVITTQTEHKC 82 (110)
Q Consensus 27 ~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~----~~~~g~~vl~~~~e~ps 82 (110)
..++-+.|.+.+.-..+.+.|+++++||+..+++..... ....+.+|+.-...|+.
T Consensus 61 ~~~la~~L~~~~p~~~~~v~f~~sGseAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG 120 (339)
T PF00202_consen 61 AAELAEKLAELFPGGLDRVFFANSGSEAVEAALKLARQYHNKRAYTGRRKILAFEGSYHG 120 (339)
T ss_dssp HHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-T
T ss_pred hhhhhhhhhhccccccceeeeccCchHHHHHHHHHhhcccccccccCCceEEEeeeeeec
Confidence 345555666666434578999999999999988765410 11455677776656654
No 328
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=74.37 E-value=22 Score=27.00 Aligned_cols=53 Identities=8% Similarity=0.166 Sum_probs=34.1
Q ss_pred HHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhH
Q psy17798 29 DARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCV 83 (110)
Q Consensus 29 ~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~ 83 (110)
++-+.+++.+....+.+.|+++++||+..+++.... + ..+.+||.-.-.|+..
T Consensus 100 ~lae~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~-~-tgr~~ii~~~~~yHG~ 152 (457)
T PRK05639 100 RVAEKLAEISPIENPKVLFGLSGSDAVDMAIKVSKF-S-TRRPWILAFIGAYHGQ 152 (457)
T ss_pred HHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHH-h-cCCCeEEEECCCcCCc
Confidence 455555555443336899999999999998875432 2 4456677655445553
No 329
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=74.12 E-value=33 Score=25.78 Aligned_cols=58 Identities=12% Similarity=-0.013 Sum_probs=35.0
Q ss_pred CCcEEE-eCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecC
Q psy17798 42 PKEIIF-TSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNP 102 (110)
Q Consensus 42 ~~~i~~-t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~ 102 (110)
...|+. |+++..++.++..+-.. .=.-.|+++..+-+-...-...++..|++|+.++.
T Consensus 106 k~~vIaetgaGnhG~A~A~~aa~~---Gl~c~I~mp~~d~~rq~~nv~~m~~lGA~Vv~v~~ 164 (397)
T PRK04346 106 KKRIIAETGAGQHGVATATAAALL---GLECVIYMGAEDVERQALNVFRMKLLGAEVVPVTS 164 (397)
T ss_pred CCeEEEecCcHHHHHHHHHHHHHc---CCcEEEEecCCchhhhhhHHHHHHHCCCEEEEECC
Confidence 346776 67788888777665442 33456777653322211223445778999998874
No 330
>PRK05867 short chain dehydrogenase; Provisional
Probab=73.72 E-value=25 Score=23.75 Aligned_cols=10 Identities=20% Similarity=0.179 Sum_probs=5.3
Q ss_pred cCCCEEEEcC
Q psy17798 68 EKKKHVITTQ 77 (110)
Q Consensus 68 ~~g~~vl~~~ 77 (110)
+.|.+|++..
T Consensus 31 ~~G~~V~~~~ 40 (253)
T PRK05867 31 EAGAQVAIAA 40 (253)
T ss_pred HCCCEEEEEc
Confidence 4555555543
No 331
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=73.37 E-value=24 Score=23.77 Aligned_cols=36 Identities=8% Similarity=0.044 Sum_probs=14.7
Q ss_pred cCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798 68 EKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG 103 (110)
Q Consensus 68 ~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~ 103 (110)
+.|.+|++..-..+........++..|.++..+..|
T Consensus 29 ~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 64 (262)
T PRK13394 29 RAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMD 64 (262)
T ss_pred HCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECC
Confidence 445555544333333333333333344444444443
No 332
>PRK06062 hypothetical protein; Provisional
Probab=73.10 E-value=21 Score=27.06 Aligned_cols=53 Identities=21% Similarity=0.235 Sum_probs=32.2
Q ss_pred HHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhH
Q psy17798 29 DARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCV 83 (110)
Q Consensus 29 ~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~ 83 (110)
++-+.|+++...+.+.|.|+++++||+..+++.... + ..+.+||.-..-|+..
T Consensus 99 ~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~-~-tgr~~ii~~~~~yHG~ 151 (451)
T PRK06062 99 EAARLIAERAPGDLSKVFFTNGGADANEHAVRMARL-H-TGRPKVLSAYRSYHGG 151 (451)
T ss_pred HHHHHHHHhCCCCCCEEEEcCChHHHHHHHHHHHHH-h-hCCceEEEEeCCCCCC
Confidence 333444444432346899999999999998875432 2 3445666554444443
No 333
>PRK07478 short chain dehydrogenase; Provisional
Probab=73.04 E-value=24 Score=23.81 Aligned_cols=6 Identities=17% Similarity=0.379 Sum_probs=2.3
Q ss_pred CCCEEE
Q psy17798 69 KKKHVI 74 (110)
Q Consensus 69 ~g~~vl 74 (110)
.|.+|+
T Consensus 29 ~G~~v~ 34 (254)
T PRK07478 29 EGAKVV 34 (254)
T ss_pred CCCEEE
Confidence 333433
No 334
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=72.89 E-value=33 Score=24.76 Aligned_cols=60 Identities=15% Similarity=0.054 Sum_probs=28.9
Q ss_pred CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHH-----HHHHHHHhCCcEEEEecCC
Q psy17798 43 KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVL-----DSCRILEGEGFNVLGSNPG 103 (110)
Q Consensus 43 ~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~-----~~~~~l~~~g~~v~~v~~~ 103 (110)
+.| +|+|++.++..+.-++.-+.+.=.-.|+++....+... .-...++..|++|+.++-+
T Consensus 65 ~~v-vt~g~s~gN~g~alA~~a~~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~ 129 (331)
T PRK03910 65 DTL-ITAGAIQSNHARQTAAAAAKLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVVPAG 129 (331)
T ss_pred CEE-EEcCcchhHHHHHHHHHHHHhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEeCcc
Confidence 445 47776555554443333211122335555443322111 1123346689999888754
No 335
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=72.83 E-value=22 Score=26.96 Aligned_cols=53 Identities=11% Similarity=0.218 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChh
Q psy17798 28 EDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKC 82 (110)
Q Consensus 28 ~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps 82 (110)
.++-+.+++++....+.+.|+++++||+..+++... .+ ..+.+|+.-...|+.
T Consensus 116 ~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr-~~-tgr~~ii~~~~~yHG 168 (459)
T PRK06082 116 IECAEKLTEIAGGELNRVLFAPGGTSAIGMALKLAR-HI-TGNFKVVSLWDSFHG 168 (459)
T ss_pred HHHHHHHHHhCCCCCCEEEECCCcHHHHHHHHHHHH-Hh-cCCCEEEEEeCCCcC
Confidence 345555555554334689999999999998887543 22 344566654433333
No 336
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=72.09 E-value=26 Score=26.62 Aligned_cols=53 Identities=25% Similarity=0.205 Sum_probs=31.0
Q ss_pred HHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhcc-C-CCEEEEcCCCChh
Q psy17798 29 DARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKE-K-KKHVITTQTEHKC 82 (110)
Q Consensus 29 ~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~-~-g~~vl~~~~e~ps 82 (110)
++-+.|++.+..+.+.+.|+++++||+..+++... .+.. + +..||...-.|+.
T Consensus 128 ~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr-~~t~~~gr~~ii~~~~~yHG 182 (459)
T PRK11522 128 MLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAK-AYQSPRGKFTFIATSGAFHG 182 (459)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCchHHHHHHHHHHH-HHhccCCCcEEEEecCCCCC
Confidence 34444444443334689999999999999887543 2211 1 3456655444443
No 337
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=72.07 E-value=18 Score=27.14 Aligned_cols=69 Identities=13% Similarity=0.128 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHhCC-CCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcC---CC--ChhHHHHHHHHHhCCcEEE
Q psy17798 25 KAVEDARQEIATLINC-DPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQ---TE--HKCVLDSCRILEGEGFNVL 98 (110)
Q Consensus 25 ~~~~~~R~~la~~l~~-~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~---~e--~ps~~~~~~~l~~~g~~v~ 98 (110)
...++.+.....+.++ ..+.++++++.+.|+.+++.++. ++.++|++- ++ |+.+... ++..|++++
T Consensus 65 ~~~~R~~~~~~~~~~~~~aea~~ivnnn~aAVll~~~al~-----~~~EvVis~g~lV~gg~~~v~d~---~~~aG~~l~ 136 (395)
T COG1921 65 KRGARLTELAELLCGLTGAEAAAIVNNNAAAVLLTLNALA-----EGKEVVVSRGELVEGGAFRVPDI---IRLAGAKLV 136 (395)
T ss_pred hhhHHHHHHHHHHhcccchhheeeECCcHHHHHHHHhhhc-----cCCeEEEEccccccCCCCChhHH---HHHcCCEEE
Confidence 3444444333344455 36789999999999998888876 456666663 33 3344433 355788888
Q ss_pred Eec
Q psy17798 99 GSN 101 (110)
Q Consensus 99 ~v~ 101 (110)
.+.
T Consensus 137 EvG 139 (395)
T COG1921 137 EVG 139 (395)
T ss_pred Eec
Confidence 764
No 338
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=71.90 E-value=23 Score=26.83 Aligned_cols=53 Identities=23% Similarity=0.164 Sum_probs=31.6
Q ss_pred HHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhc--cCCCEEEEcCCCChh
Q psy17798 29 DARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYK--EKKKHVITTQTEHKC 82 (110)
Q Consensus 29 ~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~--~~g~~vl~~~~e~ps 82 (110)
++-+.+++.+....+.+.|+++++||+..+++... ... +.+.+||.....|+.
T Consensus 121 ~lAe~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr-~~t~~~gr~~ii~~~~~yHG 175 (442)
T TIGR03372 121 LLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAK-AYQSPRGKFTFIAASGAFHG 175 (442)
T ss_pred HHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHH-HHHhhcCCcEEEEECCCccC
Confidence 44444555443333679999999999999887543 121 134566655444444
No 339
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=71.88 E-value=36 Score=27.04 Aligned_cols=58 Identities=16% Similarity=0.024 Sum_probs=33.2
Q ss_pred CCcEEE-eCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecC
Q psy17798 42 PKEIIF-TSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNP 102 (110)
Q Consensus 42 ~~~i~~-t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~ 102 (110)
++.++. ++++.++..++..+-.. .=.-.|+++..+-+-...-...++..|++|+.++-
T Consensus 318 ~~~vi~e~gsGnhG~A~A~~aa~~---Gl~~~I~m~~~~~~~~~~nv~~m~~~GA~Vi~v~~ 376 (610)
T PRK13803 318 KTRIIAETGAGQHGVATATACALF---GLKCTIFMGEEDIKRQALNVERMKLLGANVIPVLS 376 (610)
T ss_pred CCEEEEecChHHHHHHHHHHHHHc---CCcEEEEEeCCcccchhhHHHHHHHCCCEEEEECC
Confidence 456665 66677777766655431 22345666543222112223455778999999874
No 340
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=71.69 E-value=5.7 Score=25.21 Aligned_cols=22 Identities=18% Similarity=0.422 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhC-CCCCcEEEe
Q psy17798 27 VEDARQEIATLIN-CDPKEIIFT 48 (110)
Q Consensus 27 ~~~~R~~la~~l~-~~~~~i~~t 48 (110)
-.+.|+.||++++ ++++.|++-
T Consensus 38 r~eirekLA~~~~v~d~~~Vvv~ 60 (132)
T PTZ00071 38 KKDIKEKLAKQYKVADARTIVLF 60 (132)
T ss_pred HHHHHHHHHHHhCCCCCCEEEEE
Confidence 4589999999999 788887743
No 341
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=71.58 E-value=28 Score=23.49 Aligned_cols=30 Identities=13% Similarity=0.079 Sum_probs=13.2
Q ss_pred cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcC
Q psy17798 44 EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQ 77 (110)
Q Consensus 44 ~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~ 77 (110)
.|++|.+++..=..+++.+. +.|.+|++..
T Consensus 13 ~vlVtG~s~gIG~~la~~l~----~~G~~vv~~~ 42 (255)
T PRK06113 13 CAIITGAGAGIGKEIAITFA----TAGASVVVSD 42 (255)
T ss_pred EEEEECCCchHHHHHHHHHH----HCCCeEEEEe
Confidence 34444444333333444443 4555555443
No 342
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=71.25 E-value=22 Score=22.13 Aligned_cols=17 Identities=12% Similarity=0.016 Sum_probs=9.6
Q ss_pred HHHHHhCCcEEEEecCC
Q psy17798 87 CRILEGEGFNVLGSNPG 103 (110)
Q Consensus 87 ~~~l~~~g~~v~~v~~~ 103 (110)
...++..+.++..++.|
T Consensus 44 ~~~l~~~~~~~~~~~~D 60 (167)
T PF00106_consen 44 IQELKAPGAKITFIECD 60 (167)
T ss_dssp HHHHHHTTSEEEEEESE
T ss_pred ccccccccccccccccc
Confidence 34445556666666655
No 343
>TIGR00151 ispF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase. Members of this protein family are 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, the IspF protein of the deoxyxylulose (non-mevalonate) pathway of IPP biosynthesis. This protein occurs as an IspDF bifunctional fusion protein in about 20 percent of bacterial genomes.
Probab=71.02 E-value=2.9 Score=27.25 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHH
Q psy17798 23 SEKAVEDARQEIATLINCDPKEIIFTSGATESNN 56 (110)
Q Consensus 23 ~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~ 56 (110)
..+..++.|+.|++.|++++++|-+..-++|.+.
T Consensus 104 i~p~~~~m~~~la~~L~~~~~~V~iKatT~E~lg 137 (155)
T TIGR00151 104 LLPHIPAMRENIAELLGIPLDSVNVKATTTEKLG 137 (155)
T ss_pred chHHHHHHHHHHHHHhCCCcceEEEEEecCCCCC
Confidence 4457788999999999999899998888888754
No 344
>cd00554 MECDP_synthase MECDP_synthase (2-C-methyl-D-erythritol-2,4-cyclodiphosphate synthase), encoded by the ispF gene, catalyzes the formation of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MEC) in the non-mevalonate deoxyxylulose (DOXP) pathway for isoprenoid biosynthesis. This pathway is present in bacteria, plants and some protozoa but is distinct from that used by mammals and Archaea. MECDP_synthase forms a homotrimer, carrying three active sites, each of which is formed in a cleft between pairs of subunits.
Probab=70.75 E-value=3.1 Score=27.04 Aligned_cols=34 Identities=21% Similarity=0.258 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHH
Q psy17798 23 SEKAVEDARQEIATLINCDPKEIIFTSGATESNN 56 (110)
Q Consensus 23 ~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~ 56 (110)
..+..++.|+.|++.|+++.++|-+..-++|.+.
T Consensus 104 i~p~~~~m~~~ls~~L~~~~~~V~iKatT~E~lg 137 (153)
T cd00554 104 ISPYREAMRANLAELLGIPPSRVNIKATTTEGLG 137 (153)
T ss_pred chHHHHHHHHHHHHHhCCCCceEEEEEecCCCCC
Confidence 4567888999999999999999999988888754
No 345
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=69.97 E-value=28 Score=25.62 Aligned_cols=54 Identities=17% Similarity=0.279 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhc-----cCCCEEEEcCCCChhH
Q psy17798 27 VEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYK-----EKKKHVITTQTEHKCV 83 (110)
Q Consensus 27 ~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~-----~~g~~vl~~~~e~ps~ 83 (110)
..++-+.|+++.+ .+.+.|++++++|+..+++.... +. ..+++||..+..|+..
T Consensus 79 ~~~la~~L~~~~~--~~~~~f~~SGseA~e~Alk~ar~-~~~~~~~~~r~~ii~~~~~yHG~ 137 (397)
T TIGR03246 79 VLRLAKKLVDATF--ADKVFFCNSGAEANEAALKLARR-YALDKHGADKSEIVAFKNSFHGR 137 (397)
T ss_pred HHHHHHHHHhhCC--CCEEEEeCCcHHHHHHHHHHHHH-HHHhcCCCCCCEEEEECCCcCCc
Confidence 3456666666654 36899999999999999886532 21 1345666655444443
No 346
>COG0245 IspF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Lipid metabolism]
Probab=69.65 E-value=2.7 Score=27.44 Aligned_cols=34 Identities=24% Similarity=0.174 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHH
Q psy17798 22 ESEKAVEDARQEIATLINCDPKEIIFTSGATESN 55 (110)
Q Consensus 22 ~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~ 55 (110)
+..+..+..|+.||+.|++++++|-+..-++|.+
T Consensus 104 K~~P~~~amr~~ia~~L~i~~~~invKatT~E~L 137 (159)
T COG0245 104 KLGPYREAMRANIAELLGIPVDRINVKATTTEKL 137 (159)
T ss_pred cccchHHHHHHHHHHHhCCCchheEEEEeccCcc
Confidence 3456788999999999999999998888888864
No 347
>PRK07035 short chain dehydrogenase; Provisional
Probab=69.45 E-value=31 Score=23.15 Aligned_cols=11 Identities=27% Similarity=0.504 Sum_probs=5.4
Q ss_pred cCCCEEEEcCC
Q psy17798 68 EKKKHVITTQT 78 (110)
Q Consensus 68 ~~g~~vl~~~~ 78 (110)
+.|.+|++...
T Consensus 30 ~~G~~Vi~~~r 40 (252)
T PRK07035 30 QQGAHVIVSSR 40 (252)
T ss_pred HCCCEEEEEeC
Confidence 44555554443
No 348
>PRK05965 hypothetical protein; Provisional
Probab=69.30 E-value=20 Score=27.22 Aligned_cols=54 Identities=19% Similarity=0.221 Sum_probs=33.9
Q ss_pred HHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhc-----cCCCEEEEcCCCChhH
Q psy17798 29 DARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYK-----EKKKHVITTQTEHKCV 83 (110)
Q Consensus 29 ~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~-----~~g~~vl~~~~e~ps~ 83 (110)
++-+.|++.+..+.+.+.|+++++||+..+++... .+. ..+.+||.-...|+..
T Consensus 94 ~lae~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr-~~~~~~g~~~r~kii~~~~~YHG~ 152 (459)
T PRK05965 94 RLAAKLAERAPGSLNHVYFTLGGSDAVDSAVRFIR-HYWNATGRPSKKQFISLERGYHGS 152 (459)
T ss_pred HHHHHHHhhCCCCcCEEEEeCChhHHHHHHHHHHH-HHHHhcCCCCccEEEEecCCcCcc
Confidence 45555555543334689999999999999888543 121 1245677665555554
No 349
>PRK08589 short chain dehydrogenase; Validated
Probab=68.78 E-value=32 Score=23.62 Aligned_cols=9 Identities=11% Similarity=0.224 Sum_probs=4.2
Q ss_pred cCCCEEEEc
Q psy17798 68 EKKKHVITT 76 (110)
Q Consensus 68 ~~g~~vl~~ 76 (110)
+.|.+|++.
T Consensus 28 ~~G~~vi~~ 36 (272)
T PRK08589 28 QEGAYVLAV 36 (272)
T ss_pred HCCCEEEEE
Confidence 344454443
No 350
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=68.63 E-value=35 Score=25.78 Aligned_cols=51 Identities=18% Similarity=0.128 Sum_probs=30.3
Q ss_pred HHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChh
Q psy17798 30 ARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKC 82 (110)
Q Consensus 30 ~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps 82 (110)
+-+.+.+.+....+.+.|+++++||+..+++... .+ ..+.+|+.-...|+.
T Consensus 98 la~~L~~~~~~~~~~v~f~~SGsEA~e~AiklAr-~~-tgr~~ii~~~~~yHG 148 (433)
T PRK00615 98 FAEELFSYLGLEDHKIRFVSSGTEATMTAVRLAR-GI-TGRSIIIKFLGCYHG 148 (433)
T ss_pred HHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHH-Hh-hCCCEEEEEcCccCC
Confidence 3344444443333689999999999999887543 22 344566643333333
No 351
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=68.05 E-value=30 Score=26.04 Aligned_cols=54 Identities=20% Similarity=0.245 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhCCCC-CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhH
Q psy17798 28 EDARQEIATLINCDP-KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCV 83 (110)
Q Consensus 28 ~~~R~~la~~l~~~~-~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~ 83 (110)
.++-+.|++++.... +.+.|+++++||+..+++... .+ ..+.+||.-...|+..
T Consensus 100 ~~la~~L~~~~p~~~~~~v~f~~sGseA~e~AlklAr-~~-tgr~~ii~~~~~yHG~ 154 (451)
T PRK06918 100 IELAEKLAALAPGSFDKKVLFLNSGAEAVENAVKIAR-KY-TKRQGIISFSRGFHGR 154 (451)
T ss_pred HHHHHHHHHhCCCCCCCEEEEcCCcHHHHHHHHHHHH-HH-hCCCcEEEECCCcCcc
Confidence 344444555543322 589999999999999887543 22 3445666544444443
No 352
>KOG3424|consensus
Probab=67.46 E-value=8 Score=24.13 Aligned_cols=36 Identities=17% Similarity=0.422 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhCCCCCcEE-------EeCChHHHHHHHHHHhH
Q psy17798 28 EDARQEIATLINCDPKEII-------FTSGATESNNIAVKGVA 63 (110)
Q Consensus 28 ~~~R~~la~~l~~~~~~i~-------~t~gat~a~~~i~~~l~ 63 (110)
++.||.||+++..+||.|+ |+.|-|.+..+|..++.
T Consensus 38 ~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalIYdsve 80 (132)
T KOG3424|consen 38 TEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALIYDSVE 80 (132)
T ss_pred HHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeeeeehHH
Confidence 5899999999999999876 45566666666665554
No 353
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=67.35 E-value=30 Score=26.21 Aligned_cols=55 Identities=15% Similarity=0.183 Sum_probs=32.8
Q ss_pred HHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhh----ccCCCEEEEcCCCChhH
Q psy17798 29 DARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFY----KEKKKHVITTQTEHKCV 83 (110)
Q Consensus 29 ~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~----~~~g~~vl~~~~e~ps~ 83 (110)
++-+.+++.+...-+.+.|+++++||+..+++...... ...+.+||.-...|+..
T Consensus 101 ~lAe~L~~~~p~~~~~v~f~~sGseAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~ 159 (453)
T PRK06943 101 ELAERLAALTGGTLGHAFFASDGASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGE 159 (453)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCC
Confidence 34444455443333689999999999999887653100 01245677655555543
No 354
>PRK07109 short chain dehydrogenase; Provisional
Probab=67.24 E-value=33 Score=24.64 Aligned_cols=12 Identities=17% Similarity=0.130 Sum_probs=5.4
Q ss_pred hCCcEEEEecCC
Q psy17798 92 GEGFNVLGSNPG 103 (110)
Q Consensus 92 ~~g~~v~~v~~~ 103 (110)
..|.++..++.|
T Consensus 54 ~~g~~~~~v~~D 65 (334)
T PRK07109 54 AAGGEALAVVAD 65 (334)
T ss_pred HcCCcEEEEEec
Confidence 344444444443
No 355
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=67.07 E-value=12 Score=28.65 Aligned_cols=71 Identities=7% Similarity=0.056 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCC----CChhHHHHH-HHHHhCCcEEEEe
Q psy17798 26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQT----EHKCVLDSC-RILEGEGFNVLGS 100 (110)
Q Consensus 26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~----e~ps~~~~~-~~l~~~g~~v~~v 100 (110)
-+.++.+.+++++|-. .+++|..+..+.+++++.+.. .+|+++++... -|....... ......|+.++.+
T Consensus 75 Sv~~Lee~vael~G~E--~alpthqGRgaE~Il~~~~~~---~~g~e~g~~~~~~~v~hn~~fett~g~a~l~G~~~~~l 149 (467)
T TIGR02617 75 SYYALAESVKNIFGYQ--YTIPTHQGRGAEQIYIPVLIK---KREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTARNV 149 (467)
T ss_pred hHHHHHHHHHHHhCCc--eEEECCCCchHHHHHHHhhcc---cccccccccccccccceEEEEecchHHHHHcCceeecc
Confidence 4668888999999864 488998889999999888872 36776653221 222222211 1123468877776
Q ss_pred c
Q psy17798 101 N 101 (110)
Q Consensus 101 ~ 101 (110)
+
T Consensus 150 ~ 150 (467)
T TIGR02617 150 Y 150 (467)
T ss_pred c
Confidence 4
No 356
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=66.91 E-value=50 Score=24.52 Aligned_cols=58 Identities=16% Similarity=0.031 Sum_probs=33.7
Q ss_pred CCcEEE-eCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecC
Q psy17798 42 PKEIIF-TSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNP 102 (110)
Q Consensus 42 ~~~i~~-t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~ 102 (110)
++.+++ ++++..++.+++.+-.. .=.-.|+++....|........++..|++|+.++-
T Consensus 98 ~~~vi~e~ssGN~G~alA~~a~~~---Gl~~~Iv~p~~~~~~~~~~~~~~~~~GA~Vv~v~~ 156 (385)
T TIGR00263 98 KKRIIAETGAGQHGVATATAAALL---GLDCEVYMGAEDVERQKPNVFRMELLGAKVIPVTS 156 (385)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHHc---CCCEEEEecCCcccccchHHHHHHHcCCEEEEECC
Confidence 456776 55677777766655432 23346666543233211223445778999998864
No 357
>PRK06917 hypothetical protein; Provisional
Probab=66.67 E-value=33 Score=25.96 Aligned_cols=56 Identities=16% Similarity=0.242 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhh----ccCCCEEEEcCCCChhH
Q psy17798 28 EDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFY----KEKKKHVITTQTEHKCV 83 (110)
Q Consensus 28 ~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~----~~~g~~vl~~~~e~ps~ 83 (110)
.++.+.|++.+....+.+.|+++++||+..+++...... ...+.+|+.-...|+..
T Consensus 77 ~~lae~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~ 136 (447)
T PRK06917 77 EKLAKKLSDLSPGDLNWSFFVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGI 136 (447)
T ss_pred HHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCc
Confidence 345555555543333579999999999999888553110 01235676644444443
No 358
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=66.58 E-value=36 Score=25.68 Aligned_cols=54 Identities=20% Similarity=0.228 Sum_probs=33.5
Q ss_pred HHHHHHHHHhCCC-CCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHH
Q psy17798 29 DARQEIATLINCD-PKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVL 84 (110)
Q Consensus 29 ~~R~~la~~l~~~-~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~ 84 (110)
++-+.|++.+... .+.|.|+++++||+..+++.... + ..+++|+.-...|+...
T Consensus 101 ~lAe~L~~~~p~~~~~~v~f~~SGsEA~e~AlklAr~-~-tgr~~Ii~~~~~yHG~t 155 (441)
T PRK05769 101 ELAERLVEIAPGGFEKKVFFTNSGTESNEAAIKIARY-H-TGRKYIIAFLGAFHGRT 155 (441)
T ss_pred HHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHH-H-hCCCeEEEECCCcCCcc
Confidence 4444444444321 36899999999999998875432 2 34567776554455443
No 359
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=66.58 E-value=40 Score=25.25 Aligned_cols=40 Identities=13% Similarity=0.160 Sum_probs=27.3
Q ss_pred CCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhH
Q psy17798 42 PKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCV 83 (110)
Q Consensus 42 ~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~ 83 (110)
.+.+.|+++++||+..+++.... + ..+.+||.-...|+..
T Consensus 109 ~~~v~f~~sGseA~e~AlklAr~-~-tgr~~ii~~~~~yHG~ 148 (428)
T PRK12389 109 LEKVRFVNSGTEAVMTTIRVARA-Y-TGRTKIIKFAGCYHGH 148 (428)
T ss_pred CcEEEEeCCHHHHHHHHHHHHHH-h-hCCCEEEEECCCcCCC
Confidence 46899999999999998875432 2 3456676544444443
No 360
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=66.31 E-value=36 Score=22.66 Aligned_cols=8 Identities=13% Similarity=0.061 Sum_probs=3.3
Q ss_pred CCCEEEEc
Q psy17798 69 KKKHVITT 76 (110)
Q Consensus 69 ~g~~vl~~ 76 (110)
.|.+|++.
T Consensus 28 ~G~~vi~~ 35 (253)
T PRK08217 28 KGAKLALI 35 (253)
T ss_pred CCCEEEEE
Confidence 34444433
No 361
>PF02542 YgbB: YgbB family; InterPro: IPR003526 MECDP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate) synthetase, an enzyme in the non-mevalonate pathway of isoprenoid synthesis, isoprenoids being essential in all organisms. Isoprenoids can also be synthesized through the mevalonate pathway. The non-mevolante route is used by many bacteria and human pathogens, including Mycobacterium tuberculosis and Plasmodium falciparum. This route appears to involve seven enzymes. MECDP synthetase catalyses the intramolecular attack by a phosphate group on a diphosphate, with cytidine monophosphate (CMP) acting as the leaving group to give the cyclic diphosphate product MEDCP. The enzyme is a trimer with three active sites shared between adjacent copies of the protein. The enzyme also has two metal binding sites, the metals playing key roles in catalysis[]. A number of proteins from eukaryotes and prokaryotes share this common N-terminal signature and appear to be involved in terpenoid biosynthesis. The YgbB protein is a putative enzyme of this type [].; GO: 0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity, 0016114 terpenoid biosynthetic process; PDB: 3T80_B 3GHZ_A 2PMP_A 3F6M_A 3FPI_A 3RE3_A 1T0A_C 1W57_A 1W55_A 3B6N_A ....
Probab=66.14 E-value=2.5 Score=27.57 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHH
Q psy17798 24 EKAVEDARQEIATLINCDPKEIIFTSGATESNNIA 58 (110)
Q Consensus 24 ~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i 58 (110)
.+..++.|+.+|+.|++++++|-+...++|.+..+
T Consensus 106 ~p~~~~m~~~la~~L~~~~~~V~iKatT~E~lg~~ 140 (157)
T PF02542_consen 106 SPYRPAMRENLAKLLGIPPDRVNIKATTTEGLGFI 140 (157)
T ss_dssp GGGHHHHHHHHHHHHTS-GGGEEEEEE-TTTSHHH
T ss_pred HHHHHHHHHHHHHHhCCCcceEEEEEecCCCCCcc
Confidence 45678899999999999999999999988876533
No 362
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=65.91 E-value=40 Score=25.45 Aligned_cols=51 Identities=14% Similarity=0.227 Sum_probs=30.8
Q ss_pred HHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChh
Q psy17798 30 ARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKC 82 (110)
Q Consensus 30 ~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps 82 (110)
+-+.|++.+...-+.+.|+++++||+..+++... .+ ..+.+|+.-...|+.
T Consensus 89 la~~L~~~~p~~~~~v~f~~sGsEAve~AlklAr-~~-tgr~~ii~~~~~yHG 139 (443)
T PRK08360 89 LAEKLIEIAPGDNPKVSFGLSGSDANDGAIKFAR-AY-TKRRKILSYLRSYYG 139 (443)
T ss_pred HHHHHHHhCCCCCCEEEEcCCHHHHHHHHHHHHH-Hh-cCCCeEEEEeCCcCC
Confidence 3333444443333689999999999999887543 23 345566654433433
No 363
>PRK07480 putative aminotransferase; Validated
Probab=65.57 E-value=27 Score=26.51 Aligned_cols=36 Identities=17% Similarity=0.277 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhH
Q psy17798 28 EDARQEIATLINCDPKEIIFTSGATESNNIAVKGVA 63 (110)
Q Consensus 28 ~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~ 63 (110)
.++-+.|++.+..+-+.+.|+++++||+..+++...
T Consensus 97 ~~lae~L~~~~p~~~~~v~f~~SGseA~e~AlklAr 132 (456)
T PRK07480 97 IELAAKLAEVAPPGFNHVFFTNSGSEANDTVLRMVR 132 (456)
T ss_pred HHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHH
Confidence 344455555543334689999999999999887543
No 364
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=65.55 E-value=47 Score=25.22 Aligned_cols=54 Identities=15% Similarity=0.287 Sum_probs=32.5
Q ss_pred HHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhh----ccCCCEEEEcCCCChh
Q psy17798 29 DARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFY----KEKKKHVITTQTEHKC 82 (110)
Q Consensus 29 ~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~----~~~g~~vl~~~~e~ps 82 (110)
++-+.|++++...-+.+.|+++++||+..+++...... ...+.+||.-...|+.
T Consensus 103 ~lae~L~~~~p~~~~~v~f~~SGseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG 160 (460)
T PRK06916 103 LLAEKLIEVVPEGLKKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHG 160 (460)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCc
Confidence 44455555543333689999999999998887543110 0224567665544554
No 365
>PRK06139 short chain dehydrogenase; Provisional
Probab=65.50 E-value=32 Score=24.76 Aligned_cols=36 Identities=8% Similarity=0.114 Sum_probs=14.5
Q ss_pred cCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798 68 EKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG 103 (110)
Q Consensus 68 ~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~ 103 (110)
+.|.+|++..-...........++..|.++..++.|
T Consensus 29 ~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~D 64 (330)
T PRK06139 29 RRGARLVLAARDEEALQAVAEECRALGAEVLVVPTD 64 (330)
T ss_pred HCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEee
Confidence 455555554332222222222333345555444443
No 366
>PRK06148 hypothetical protein; Provisional
Probab=65.20 E-value=35 Score=28.75 Aligned_cols=52 Identities=10% Similarity=0.129 Sum_probs=31.7
Q ss_pred HHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChh
Q psy17798 29 DARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKC 82 (110)
Q Consensus 29 ~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps 82 (110)
++-+.|++.+..+-+.+.|+++++||+..+++... .+ ..+.+||.-...|+.
T Consensus 667 ~lAe~L~~~~p~~~~~v~f~nSGsEA~e~AlklAr-~~-tGr~~ii~~~~~YHG 718 (1013)
T PRK06148 667 AYAERLTATLPDGLTVAFFVNSGSEANSLALRLAR-AH-TGQRDAIVLDHAYHG 718 (1013)
T ss_pred HHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHH-Hh-cCCCeEEEEcCCccC
Confidence 34444444443223679999999999999887543 22 345567665444444
No 367
>KOG1404|consensus
Probab=65.14 E-value=6.1 Score=29.74 Aligned_cols=39 Identities=21% Similarity=0.375 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhH
Q psy17798 25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVA 63 (110)
Q Consensus 25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~ 63 (110)
+-+.++-+.|+..+-.+-+-+.|+++++||+.++++...
T Consensus 92 ~pi~~~Ae~L~s~~P~~l~~vfF~nsGsEANelal~mar 130 (442)
T KOG1404|consen 92 PPIHDLAEALVSKLPGDLKVVFFVNSGSEANELALKMAR 130 (442)
T ss_pred CcHHHHHHHHHHhCCCCceEEEEecCCchHHHHHHHHHH
Confidence 345566666666665556679999999999999876543
No 368
>PRK06114 short chain dehydrogenase; Provisional
Probab=65.13 E-value=40 Score=22.77 Aligned_cols=57 Identities=11% Similarity=0.126 Sum_probs=23.5
Q ss_pred CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCCh-hHHHHHHHHHhCCcEEEEecCC
Q psy17798 43 KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHK-CVLDSCRILEGEGFNVLGSNPG 103 (110)
Q Consensus 43 ~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~p-s~~~~~~~l~~~g~~v~~v~~~ 103 (110)
..+++|.++...=..++..|. +.|.+|++.....+ ........++..+.++..++.|
T Consensus 9 k~~lVtG~s~gIG~~ia~~l~----~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D 66 (254)
T PRK06114 9 QVAFVTGAGSGIGQRIAIGLA----QAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAAD 66 (254)
T ss_pred CEEEEECCCchHHHHHHHHHH----HCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcC
Confidence 344455444332233334443 45656555433222 2222233333344445445444
No 369
>PRK06194 hypothetical protein; Provisional
Probab=64.96 E-value=43 Score=23.03 Aligned_cols=10 Identities=0% Similarity=0.039 Sum_probs=4.8
Q ss_pred cCCCEEEEcC
Q psy17798 68 EKKKHVITTQ 77 (110)
Q Consensus 68 ~~g~~vl~~~ 77 (110)
+.|.+|++.+
T Consensus 28 ~~G~~V~~~~ 37 (287)
T PRK06194 28 ALGMKLVLAD 37 (287)
T ss_pred HCCCEEEEEe
Confidence 4455555443
No 370
>PRK05650 short chain dehydrogenase; Provisional
Probab=64.89 E-value=37 Score=23.17 Aligned_cols=16 Identities=6% Similarity=0.144 Sum_probs=6.7
Q ss_pred cEEEeCChHHHHHHHH
Q psy17798 44 EIIFTSGATESNNIAV 59 (110)
Q Consensus 44 ~i~~t~gat~a~~~i~ 59 (110)
+|+++.-..+.+..+.
T Consensus 26 ~V~~~~r~~~~~~~~~ 41 (270)
T PRK05650 26 RLALADVNEEGGEETL 41 (270)
T ss_pred EEEEEeCCHHHHHHHH
Confidence 4554443333333333
No 371
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=64.20 E-value=42 Score=25.28 Aligned_cols=52 Identities=10% Similarity=0.160 Sum_probs=30.6
Q ss_pred HHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhc----cCCCEEEEcCCCChh
Q psy17798 30 ARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYK----EKKKHVITTQTEHKC 82 (110)
Q Consensus 30 ~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~----~~g~~vl~~~~e~ps 82 (110)
+-+.+++.+..+.+.+.|+++++||+..+++.... +. .++.+||.-...|+.
T Consensus 91 la~~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~-~~~~~g~~r~kii~~~~~yHG 146 (428)
T PRK07986 91 LCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQ-YWQAKGEPRQRFLTLRHGYHG 146 (428)
T ss_pred HHHHHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHH-HHHhcCCCCcEEEEECCCcCC
Confidence 33444444332336899999999999988875432 10 134566655444443
No 372
>PRK07046 aminotransferase; Validated
Probab=63.82 E-value=46 Score=25.25 Aligned_cols=50 Identities=10% Similarity=0.063 Sum_probs=32.7
Q ss_pred HHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhH
Q psy17798 30 ARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCV 83 (110)
Q Consensus 30 ~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~ 83 (110)
+-+.|.+.++ .+.+.|++++|||...+++... .+ ..+++|+.-...|+..
T Consensus 120 lAe~l~~~~~--~~~v~F~nSGtEA~e~AlrlAR-~~-TGr~~ii~~~g~YHG~ 169 (453)
T PRK07046 120 VGEELARRFG--LPYWQVATTATDANRFVLRWAR-AV-TGRPKILVFNGCYHGT 169 (453)
T ss_pred HHHHHHHHhC--CCEEEEECCHHHHHHHHHHHHH-Hh-hCCCEEEEECCCCCCC
Confidence 4444444443 5789999999999998887543 22 4556777655445553
No 373
>PRK07890 short chain dehydrogenase; Provisional
Probab=63.58 E-value=42 Score=22.52 Aligned_cols=7 Identities=14% Similarity=0.178 Sum_probs=3.0
Q ss_pred CCCEEEE
Q psy17798 69 KKKHVIT 75 (110)
Q Consensus 69 ~g~~vl~ 75 (110)
.|.+|++
T Consensus 28 ~G~~V~~ 34 (258)
T PRK07890 28 AGADVVL 34 (258)
T ss_pred cCCEEEE
Confidence 4444443
No 374
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=63.23 E-value=45 Score=25.20 Aligned_cols=53 Identities=15% Similarity=0.199 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhCCC-CCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChh
Q psy17798 28 EDARQEIATLINCD-PKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKC 82 (110)
Q Consensus 28 ~~~R~~la~~l~~~-~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps 82 (110)
.++-+.|++.+... .+.|.|+++++||+..+++... .+ ..+.+||.-..-|+.
T Consensus 88 ~~lae~L~~~~p~~~~~~v~f~~SGseA~e~AiklAr-~~-tgr~~ii~~~~~YHG 141 (445)
T PRK08593 88 VRLAKKLCELAPGDFEKRVTFGLSGSDANDGIIKFAR-AY-TGRPYIISFTNAYHG 141 (445)
T ss_pred HHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHH-Hh-hCCCeEEEECCCcCC
Confidence 34444555544322 2579999999999999887543 22 334566654444444
No 375
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=63.22 E-value=30 Score=26.02 Aligned_cols=73 Identities=19% Similarity=0.236 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHh-CCC-----CCcE--EEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCc
Q psy17798 24 EKAVEDARQEIATLI-NCD-----PKEI--IFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGF 95 (110)
Q Consensus 24 ~~~~~~~R~~la~~l-~~~-----~~~i--~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~ 95 (110)
-.+++..++.+++++ |.+ .+.| +=|.|+|.|+.+.+.-+... .++..|.+++...|.... .++..|+
T Consensus 68 i~G~~~f~~~~~~llFG~d~~~l~~~Rv~t~Qt~GGTGAL~~~A~fl~~~--~~~~~vwis~PtW~NH~~---If~~aGl 142 (396)
T COG1448 68 IEGLPEFLEAVQKLLFGADSPALAEDRVATVQTLGGTGALRVAADFLARF--FPDATVWISDPTWPNHKA---IFEAAGL 142 (396)
T ss_pred cCCcHHHHHHHHHHhcCCCcHHHHhhhHhheecCCcchHHHHHHHHHHHh--CCCceEEeCCCCcHhHHH---HHHhcCC
Confidence 346777888888765 433 3444 45789999999999887642 577789988766655444 3466899
Q ss_pred EEEEec
Q psy17798 96 NVLGSN 101 (110)
Q Consensus 96 ~v~~v~ 101 (110)
+|..-|
T Consensus 143 ~v~~Y~ 148 (396)
T COG1448 143 EVETYP 148 (396)
T ss_pred ceeeee
Confidence 987665
No 376
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=63.09 E-value=46 Score=22.77 Aligned_cols=8 Identities=13% Similarity=0.048 Sum_probs=3.6
Q ss_pred cCCCEEEE
Q psy17798 68 EKKKHVIT 75 (110)
Q Consensus 68 ~~g~~vl~ 75 (110)
+.|.+|++
T Consensus 32 ~~G~~V~~ 39 (278)
T PRK08277 32 RAGAKVAI 39 (278)
T ss_pred HCCCEEEE
Confidence 34444444
No 377
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=63.05 E-value=40 Score=25.45 Aligned_cols=53 Identities=19% Similarity=0.268 Sum_probs=31.6
Q ss_pred HHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhc-----cCCCEEEEcCCCChh
Q psy17798 29 DARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYK-----EKKKHVITTQTEHKC 82 (110)
Q Consensus 29 ~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~-----~~g~~vl~~~~e~ps 82 (110)
++-+.+++++....+.|.|+++++||+..+++.... +. ..+.+||.-...|+.
T Consensus 93 ~la~~l~~~~p~~~~~v~f~~sGseA~e~AlklAr~-~~~~~g~~~r~~ii~~~~~yHG 150 (442)
T PRK13360 93 ELANRIAEIAPGGLNHVFFTNSGSESVDTALKIALA-YHRARGEGSRTRLIGRERGYHG 150 (442)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHH-HHHhcCCCCCcEEEEEcCCcCC
Confidence 444555555432346899999999999988875431 11 123567655444444
No 378
>PF02594 DUF167: Uncharacterised ACR, YggU family COG1872; InterPro: IPR003746 This entry describes proteins of unknown function. Structures for two of these proteins, YggU from Escherichia coli and MTH637 from the archaea Methanobacterium thermoautotrophicum, have been determined; they have a core 2-layer alpha/beta structure consisting of beta(2)-loop-alpha-beta(2)-alpha [, ].; PDB: 1YH5_A 1N91_A 1JRM_A.
Probab=62.80 E-value=9.6 Score=21.73 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhCCCCCcEEEeCChH
Q psy17798 28 EDARQEIATLINCDPKEIIFTSGAT 52 (110)
Q Consensus 28 ~~~R~~la~~l~~~~~~i~~t~gat 52 (110)
+++.+.+|+.|+++..+|-+.+|.+
T Consensus 43 ~ali~~La~~l~v~ks~i~i~~G~~ 67 (77)
T PF02594_consen 43 KALIRFLAKALGVPKSDIEIVSGHT 67 (77)
T ss_dssp HHHHHHHHHHCT--TTCEEECC-CC
T ss_pred HHHHHHHHHHhCCCcccEEEEecCC
Confidence 4678899999999999999988864
No 379
>TIGR01078 arcA arginine deiminase. Arginine deiminase is the first enzyme of the arginine deiminase pathway of arginine degradation.
Probab=62.63 E-value=15 Score=27.63 Aligned_cols=67 Identities=19% Similarity=0.163 Sum_probs=40.1
Q ss_pred HHHHHHHHhCCCCCcEEEeCChH------HHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798 30 ARQEIATLINCDPKEIIFTSGAT------ESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG 103 (110)
Q Consensus 30 ~R~~la~~l~~~~~~i~~t~gat------~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~ 103 (110)
+.+.+++.++.+.=+++-++|.. |.++.....+. +.||. ||+ +..+...-+.|++.|++|..++.+
T Consensus 313 l~~~l~~~l~~~~~~iI~~~g~d~~~~~rEq~~~g~NvLa---i~pg~-Vi~----y~rn~~tn~~L~~~Gi~V~~i~~s 384 (405)
T TIGR01078 313 LEEVLASALGVKKLRLIPTGGGDSVEAEREQWNDGNNVLA---IAPGV-VVG----YSRNVYTNALLEKAGIKVLTIPGS 384 (405)
T ss_pred HHHHHHHHhCCCCceEEecCCCChhhhhHHHHhcCCcEEE---eCCCE-EEE----ecCCHHHHHHHHHCCCEEEEeChH
Confidence 56777777887766788887532 22232322222 23443 332 223445556778899999999876
Q ss_pred C
Q psy17798 104 Q 104 (110)
Q Consensus 104 ~ 104 (110)
+
T Consensus 385 E 385 (405)
T TIGR01078 385 E 385 (405)
T ss_pred H
Confidence 3
No 380
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=62.54 E-value=56 Score=23.57 Aligned_cols=58 Identities=12% Similarity=0.098 Sum_probs=32.2
Q ss_pred CCCcEEEeCChH---------HHHHHHHHHhHHhhccCCCEEEEcCCCChhHHH---HHHHHHhCCcEEEEecC
Q psy17798 41 DPKEIIFTSGAT---------ESNNIAVKGVARFYKEKKKHVITTQTEHKCVLD---SCRILEGEGFNVLGSNP 102 (110)
Q Consensus 41 ~~~~i~~t~gat---------~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~---~~~~l~~~g~~v~~v~~ 102 (110)
...++++|.|-+ .++..+..+... .+.-+|++.+ ..|.... ..+.|.+.|+.++.++-
T Consensus 117 ~~g~~ILT~~~Sg~lat~~~~tv~~~l~~A~~~---g~~~~V~v~E-srP~~~G~~~~a~~L~~~gI~vtlI~D 186 (303)
T TIGR00524 117 KDGDTVLTHCNAGALATSDYGTALGVIRSAWED---GKRIRVIACE-TRPRNQGSRLTAWELMQDGIDVTLITD 186 (303)
T ss_pred cCCCEEEEecCCccccccCcchHHHHHHHHHHc---CCceEEEECC-CCCccchHHHHHHHHHHCCCCEEEECh
Confidence 345688887755 333333333221 2334666653 2454433 35567778999998863
No 381
>PRK06149 hypothetical protein; Provisional
Probab=62.41 E-value=40 Score=28.27 Aligned_cols=54 Identities=13% Similarity=0.218 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChh
Q psy17798 27 VEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKC 82 (110)
Q Consensus 27 ~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps 82 (110)
..++-+.+++++....+.+.|+++++||+..+++... .+ ..+..||...-.|+.
T Consensus 626 ~~elae~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr-~~-tgr~~ii~~~~~yHG 679 (972)
T PRK06149 626 VAEFSERLAALAPDGLDTVFLVNSGSEANDLAIRLAW-AA-SGRRDVVSVLEAYHG 679 (972)
T ss_pred HHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHH-Hh-cCCCeEEEEeCCCCC
Confidence 3445555555553234689999999999999887432 22 344566665555553
No 382
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=62.30 E-value=46 Score=22.48 Aligned_cols=10 Identities=20% Similarity=0.295 Sum_probs=4.9
Q ss_pred cCCCEEEEcC
Q psy17798 68 EKKKHVITTQ 77 (110)
Q Consensus 68 ~~g~~vl~~~ 77 (110)
+.|.+|++..
T Consensus 34 ~~G~~V~~~~ 43 (259)
T PRK08213 34 EAGARVVLSA 43 (259)
T ss_pred HcCCEEEEEe
Confidence 4555555443
No 383
>PRK06105 aminotransferase; Provisional
Probab=62.22 E-value=12 Score=28.44 Aligned_cols=35 Identities=23% Similarity=0.369 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHh
Q psy17798 28 EDARQEIATLINCDPKEIIFTSGATESNNIAVKGV 62 (110)
Q Consensus 28 ~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l 62 (110)
.++-+.|++++..+-+.+.|+++++||+..+++..
T Consensus 95 ~~lae~L~~~~p~~~~~v~f~~SGseAve~AlKla 129 (460)
T PRK06105 95 IDLAEKLVAMAPVPMSKVFFTNSGSEANDTVVKLV 129 (460)
T ss_pred HHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHH
Confidence 34555555555433468999999999999988864
No 384
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=62.01 E-value=49 Score=23.52 Aligned_cols=54 Identities=15% Similarity=0.151 Sum_probs=24.3
Q ss_pred EEeCChHHHHHH-HHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCcEEEEecCC
Q psy17798 46 IFTSGATESNNI-AVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFNVLGSNPG 103 (110)
Q Consensus 46 ~~t~gat~a~~~-i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~v~~v~~~ 103 (110)
++..|||.+|-. ++.-+. ++|.++++..-.-.-.......+ .+.|+++..+|.|
T Consensus 9 ~lITGASsGIG~~~A~~lA----~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~D 64 (265)
T COG0300 9 ALITGASSGIGAELAKQLA----RRGYNLILVARREDKLEALAKELEDKTGVEVEVIPAD 64 (265)
T ss_pred EEEECCCchHHHHHHHHHH----HCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECc
Confidence 344444444433 333443 45554443332222223333344 3456777777766
No 385
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=62.01 E-value=9.1 Score=22.42 Aligned_cols=73 Identities=16% Similarity=0.246 Sum_probs=44.1
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCC
Q psy17798 15 RTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEG 94 (110)
Q Consensus 15 ~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g 94 (110)
..|++.-.....+.++++.|++.++.+.+. +..+. + .+. -.+||.|+++.. .-...++...+..|
T Consensus 11 rvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~-------~~~~~--L-~Yl---DDEgD~VllT~D--~DL~e~v~iar~~g 75 (86)
T cd06409 11 RVHRFRLRPSESLEELRTLISQRLGDDDFE-------THLYA--L-SYV---DDEGDIVLITSD--SDLVAAVLVARSAG 75 (86)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHhCCcccc-------CCccc--E-EEE---cCCCCEEEEecc--chHHHHHHHHHHcC
Confidence 356665555678999999999999986543 01100 0 111 167888877543 33456666666667
Q ss_pred cEEEEecC
Q psy17798 95 FNVLGSNP 102 (110)
Q Consensus 95 ~~v~~v~~ 102 (110)
-+.+.+-+
T Consensus 76 ~~~v~L~v 83 (86)
T cd06409 76 LKKLDLHL 83 (86)
T ss_pred CCEEEEEE
Confidence 66555443
No 386
>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=61.94 E-value=43 Score=25.15 Aligned_cols=54 Identities=11% Similarity=0.244 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhc-----cCCCEEEEcCCCChh
Q psy17798 28 EDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYK-----EKKKHVITTQTEHKC 82 (110)
Q Consensus 28 ~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~-----~~g~~vl~~~~e~ps 82 (110)
.++.+.+++.+...-+.+.|+++++||+..+++.... +. ..+.+|+.-...|+.
T Consensus 86 ~~lae~L~~~~p~~~~~v~f~~SGseA~e~AlklAr~-~~~~~g~~~r~~ii~~~~~yHG 144 (422)
T PRK05630 86 IKLTRKLLNLTDNGLDHVFYSDSGSVSVEVAIKMALQ-YSKGQGHPERTRLLTWRSGYHG 144 (422)
T ss_pred HHHHHHHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHH-HHHhcCCCCCcEEEEECCCcCC
Confidence 3444555554432346899999999999988875431 11 123567665544444
No 387
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=61.89 E-value=51 Score=24.80 Aligned_cols=53 Identities=17% Similarity=0.146 Sum_probs=32.4
Q ss_pred HHHHHHHHhCCC-CCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHH
Q psy17798 30 ARQEIATLINCD-PKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVL 84 (110)
Q Consensus 30 ~R~~la~~l~~~-~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~ 84 (110)
+-+.+++.+... .+.+.|+++++||+..+++... .+ ..+++|+.....|+...
T Consensus 104 la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr-~~-tgr~~ii~~~~~yHG~t 157 (443)
T PRK06058 104 VAEQLNRLTPGDHEKRSALFNSGAEAVENAVKIAR-SY-TGRQAVVVFDHAYHGRT 157 (443)
T ss_pred HHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHH-Hh-hCCCeEEEECCCcCcCh
Confidence 333444443322 2579999999999998887432 22 34567776555555544
No 388
>PRK08643 acetoin reductase; Validated
Probab=61.70 E-value=46 Score=22.36 Aligned_cols=6 Identities=0% Similarity=0.279 Sum_probs=2.6
Q ss_pred cEEEeC
Q psy17798 44 EIIFTS 49 (110)
Q Consensus 44 ~i~~t~ 49 (110)
+|+++.
T Consensus 28 ~v~~~~ 33 (256)
T PRK08643 28 KVAIVD 33 (256)
T ss_pred EEEEEe
Confidence 344443
No 389
>PRK08862 short chain dehydrogenase; Provisional
Probab=61.40 E-value=47 Score=22.34 Aligned_cols=18 Identities=6% Similarity=0.047 Sum_probs=8.6
Q ss_pred cEEEeCChHHHHHHHHHH
Q psy17798 44 EIIFTSGATESNNIAVKG 61 (110)
Q Consensus 44 ~i~~t~gat~a~~~i~~~ 61 (110)
+|+++.-..+.+..+...
T Consensus 31 ~V~~~~r~~~~l~~~~~~ 48 (227)
T PRK08862 31 TLILCDQDQSALKDTYEQ 48 (227)
T ss_pred EEEEEcCCHHHHHHHHHH
Confidence 455555444444444433
No 390
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=61.00 E-value=58 Score=23.25 Aligned_cols=73 Identities=21% Similarity=0.178 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHhC--CCCCcEEEeCChH-HHHHHHHHHhHHhhccCCCEEEEcCCCChhHHH--HHHHHHhCCcEEEE
Q psy17798 25 KAVEDARQEIATLIN--CDPKEIIFTSGAT-ESNNIAVKGVARFYKEKKKHVITTQTEHKCVLD--SCRILEGEGFNVLG 99 (110)
Q Consensus 25 ~~~~~~R~~la~~l~--~~~~~i~~t~gat-~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~--~~~~l~~~g~~v~~ 99 (110)
+...++++.++++-. ..+.++++|.+-+ .++..+..+... .+.-+|++.+ ..|...+ ..+.|.+.|+.++.
T Consensus 90 ~~~~~~~~~I~~~a~~~I~~g~~ILTh~~S~tv~~~l~~A~~~---gk~~~V~v~E-srP~~qG~~la~eL~~~GI~vtl 165 (275)
T PRK08335 90 RLMEEAKREIGNIGSELIDDGDVIITHSFSSAVLEILKTAKRK---GKRFKVILTE-SAPDYEGLALANELEFLGIEFEV 165 (275)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEECCcHHHHHHHHHHHHc---CCceEEEEec-CCCchhHHHHHHHHHHCCCCEEE
Confidence 444555666654432 2345577776644 444444333321 2233666653 2343322 24556778999988
Q ss_pred ec
Q psy17798 100 SN 101 (110)
Q Consensus 100 v~ 101 (110)
++
T Consensus 166 I~ 167 (275)
T PRK08335 166 IT 167 (275)
T ss_pred Ee
Confidence 86
No 391
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=60.43 E-value=61 Score=23.31 Aligned_cols=72 Identities=17% Similarity=0.150 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhC--CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhH--HHHHHHHHhCCcEEEEec
Q psy17798 27 VEDARQEIATLIN--CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCV--LDSCRILEGEGFNVLGSN 101 (110)
Q Consensus 27 ~~~~R~~la~~l~--~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~--~~~~~~l~~~g~~v~~v~ 101 (110)
+..+++.|+++-. ....++++|.|-+.....++..... ..+.-+|++++ ..|.. ....+.|.+.|++++.++
T Consensus 98 ~~~a~~~I~~~a~~~i~~g~~ILT~~~S~tv~~~l~~a~~--~~~~f~V~v~E-srP~~~G~~~a~~L~~~gI~vtlI~ 173 (301)
T TIGR00511 98 SDKAQERIGEIGAKRIRDGDVVMTHCNSEAALSVIKTAFE--QGKDIEVIATE-TRPRKQGHITAKELRDYGIPVTLIV 173 (301)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEECCcHHHHHHHHHHHH--cCCcEEEEEec-CCCcchHHHHHHHHHHCCCCEEEEe
Confidence 4455555555432 2345678887755443333333321 12334666654 23433 233556677899999886
No 392
>PRK06720 hypothetical protein; Provisional
Probab=59.99 E-value=45 Score=21.63 Aligned_cols=14 Identities=21% Similarity=0.408 Sum_probs=6.6
Q ss_pred cCCCEEEEcCCCCh
Q psy17798 68 EKKKHVITTQTEHK 81 (110)
Q Consensus 68 ~~g~~vl~~~~e~p 81 (110)
+.|.+|++.....+
T Consensus 38 ~~G~~V~l~~r~~~ 51 (169)
T PRK06720 38 KQGAKVIVTDIDQE 51 (169)
T ss_pred HCCCEEEEEECCHH
Confidence 45555555443333
No 393
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=59.78 E-value=27 Score=18.94 Aligned_cols=32 Identities=13% Similarity=0.041 Sum_probs=17.0
Q ss_pred EEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798 73 VITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ 104 (110)
Q Consensus 73 vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~ 104 (110)
++.+...-|....+...|++.|++...+.+++
T Consensus 4 ~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~ 35 (73)
T cd03027 4 TIYSRLGCEDCTAVRLFLREKGLPYVEINIDI 35 (73)
T ss_pred EEEecCCChhHHHHHHHHHHCCCceEEEECCC
Confidence 34444444555555555555666665555543
No 394
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=59.62 E-value=37 Score=23.26 Aligned_cols=57 Identities=5% Similarity=0.054 Sum_probs=38.7
Q ss_pred CCcEEEeCChHHHHHHHHHHhHHhhc--------cCCCEEEEcC-----CCChhHHHHHHHHHhCCcEEE
Q psy17798 42 PKEIIFTSGATESNNIAVKGVARFYK--------EKKKHVITTQ-----TEHKCVLDSCRILEGEGFNVL 98 (110)
Q Consensus 42 ~~~i~~t~gat~a~~~i~~~l~~~~~--------~~g~~vl~~~-----~e~ps~~~~~~~l~~~g~~v~ 98 (110)
.|-+++.+-+..-++-++.++.-..+ .....++.+. .+||.+...+..|++.|+.|.
T Consensus 97 AD~~vVaPaTaNtlaKiA~GiaDnlltt~l~a~~~~~Pv~iaPaMN~~Mw~~Pat~~nl~~L~~~G~~vi 166 (209)
T PLN02496 97 ADVMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYSKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLI 166 (209)
T ss_pred hCEEEEEeCCHHHHHHHHcccCCcHHHHHHHHcCCCCCEEEEeCCCHHHHhCHHHHHHHHHHHHCCCEEE
Confidence 45677777777777777766642110 1345566554 599999999999988887664
No 395
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=59.58 E-value=49 Score=22.43 Aligned_cols=19 Identities=21% Similarity=0.328 Sum_probs=9.4
Q ss_pred cEEEeCChHHHHHHHHHHh
Q psy17798 44 EIIFTSGATESNNIAVKGV 62 (110)
Q Consensus 44 ~i~~t~gat~a~~~i~~~l 62 (110)
+|+++.-..+.+..+...+
T Consensus 26 ~V~~~~r~~~~~~~~~~~l 44 (259)
T PRK08340 26 RVVISSRNEENLEKALKEL 44 (259)
T ss_pred EEEEEeCCHHHHHHHHHHH
Confidence 4666655444444444433
No 396
>PRK12566 glycine dehydrogenase; Provisional
Probab=59.55 E-value=1.1e+02 Score=25.96 Aligned_cols=78 Identities=19% Similarity=0.156 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCcEEEEec
Q psy17798 23 SEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFNVLGSN 101 (110)
Q Consensus 23 ~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~v~~v~ 101 (110)
..+.+-+.-..++++.|.+-.|=-+-.++|.+-..++.+.... ..++.+|+++..-||.+...++.. +..|++++.-.
T Consensus 122 ~Lqal~e~Qtmi~~LtGm~vaNASl~D~atA~aEA~~ma~~~~-~~k~~~~~v~~~~hP~~~~v~~t~~~~~g~~i~~~~ 200 (954)
T PRK12566 122 RLEALLNFQQMTIDLTGLDLANASLLDEATAAAEAMALAKRVA-KSKSNRFFVDEHCHPQTLSVLRTRAEGFGFELVVDA 200 (954)
T ss_pred HHHHHHHHHHHHHHHhCchhhhhhhccchhHHHHHHHHHHHHh-hcCCCEEEECCCCCHHHHHHHHHhhhcCCcEEEEcc
Confidence 4456777888899999877555444444444333232222210 023578999999999988877776 56788877633
No 397
>PLN02618 tryptophan synthase, beta chain
Probab=59.36 E-value=75 Score=24.02 Aligned_cols=58 Identities=12% Similarity=-0.064 Sum_probs=32.6
Q ss_pred CCcEEEeC-ChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecC
Q psy17798 42 PKEIIFTS-GATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNP 102 (110)
Q Consensus 42 ~~~i~~t~-gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~ 102 (110)
++.++..+ ++..+..++..+-.. .=.-.|+++..+-.-...-...++..|++|+.++.
T Consensus 119 ~~~vIaesgaGNhG~AlA~aaa~~---Gl~~~I~m~~~~~~~~~~nv~~mr~lGA~Vi~v~~ 177 (410)
T PLN02618 119 KKRIIAETGAGQHGVATATVCARF---GLECIVYMGAQDMERQALNVFRMRLLGAEVRPVHS 177 (410)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHHc---CCcEEEEEcCCchhhhhhhHHHHHHCCCEEEEEeC
Confidence 46677654 677777766655431 23356776553211111112345778999999964
No 398
>PRK07774 short chain dehydrogenase; Provisional
Probab=59.29 E-value=51 Score=22.01 Aligned_cols=7 Identities=14% Similarity=0.287 Sum_probs=3.0
Q ss_pred CCCEEEE
Q psy17798 69 KKKHVIT 75 (110)
Q Consensus 69 ~g~~vl~ 75 (110)
.|.+|++
T Consensus 29 ~g~~vi~ 35 (250)
T PRK07774 29 EGASVVV 35 (250)
T ss_pred CCCEEEE
Confidence 4444443
No 399
>KOG3938|consensus
Probab=59.24 E-value=13 Score=26.69 Aligned_cols=25 Identities=28% Similarity=0.541 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeC
Q psy17798 25 KAVEDARQEIATLINCDPKEIIFTS 49 (110)
Q Consensus 25 ~~~~~~R~~la~~l~~~~~~i~~t~ 49 (110)
.-+.++.+.||+.+..++++|+|+.
T Consensus 73 snv~ELY~kIAe~F~Is~~dIlfcT 97 (334)
T KOG3938|consen 73 SNVRELYQKIAEAFDISPDDILFCT 97 (334)
T ss_pred ccHHHHHHHHHHHhcCCccceEEEe
Confidence 3578999999999999999999887
No 400
>PRK07063 short chain dehydrogenase; Provisional
Probab=59.13 E-value=53 Score=22.18 Aligned_cols=9 Identities=11% Similarity=0.047 Sum_probs=4.0
Q ss_pred cCCCEEEEc
Q psy17798 68 EKKKHVITT 76 (110)
Q Consensus 68 ~~g~~vl~~ 76 (110)
+.|.+|++.
T Consensus 29 ~~G~~vv~~ 37 (260)
T PRK07063 29 REGAAVALA 37 (260)
T ss_pred HCCCEEEEE
Confidence 344444443
No 401
>PRK07481 hypothetical protein; Provisional
Probab=59.06 E-value=53 Score=24.84 Aligned_cols=53 Identities=17% Similarity=0.295 Sum_probs=31.9
Q ss_pred HHHHHHHHHhCC-CCCcEEEeCChHHHHHHHHHHhHHhhc-----cCCCEEEEcCCCChh
Q psy17798 29 DARQEIATLINC-DPKEIIFTSGATESNNIAVKGVARFYK-----EKKKHVITTQTEHKC 82 (110)
Q Consensus 29 ~~R~~la~~l~~-~~~~i~~t~gat~a~~~i~~~l~~~~~-----~~g~~vl~~~~e~ps 82 (110)
++-+.|++++.. .-+.+.|+++++||+..+++.... +. ..+.+||.-...|+.
T Consensus 90 ~lae~L~~~~~~~~~~~v~f~~sGsEAve~AlklAr~-~~~~~g~~~r~~ii~~~~~yHG 148 (449)
T PRK07481 90 ELSYELIDMFAPEGMRRVFFSSGGSDSVETALKLARQ-YWKVRGQPERTKFISLKQGYHG 148 (449)
T ss_pred HHHHHHHHhcCCCCCCEEEEcCchHHHHHHHHHHHHH-HHHhcCCCCCcEEEEECCCcCC
Confidence 444455555431 235899999999999988875431 21 123567665544554
No 402
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=58.77 E-value=63 Score=24.23 Aligned_cols=52 Identities=21% Similarity=0.189 Sum_probs=31.2
Q ss_pred HHHHHHHHhCCC-CCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhH
Q psy17798 30 ARQEIATLINCD-PKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCV 83 (110)
Q Consensus 30 ~R~~la~~l~~~-~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~ 83 (110)
+-+.+++.+... .+.+.|+++++||+..+++... .+ ..+.+|+.-..-|+..
T Consensus 88 la~~l~~~~p~~~~~~v~f~~SGseA~e~AlklAr-~~-tgr~~ii~~~~~yHG~ 140 (425)
T PRK07495 88 LAERLNALVPGDFAKKTIFVTTGAEAVENAVKIAR-AA-TGRSAVIAFGGGFHGR 140 (425)
T ss_pred HHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHH-Hh-hCCCeEEEECCCcCCc
Confidence 334444444322 2589999999999998887543 22 3455676544444443
No 403
>PRK07791 short chain dehydrogenase; Provisional
Probab=58.45 E-value=60 Score=22.59 Aligned_cols=9 Identities=11% Similarity=0.272 Sum_probs=4.8
Q ss_pred cCCCEEEEc
Q psy17798 68 EKKKHVITT 76 (110)
Q Consensus 68 ~~g~~vl~~ 76 (110)
+.|.+|++.
T Consensus 28 ~~G~~vii~ 36 (286)
T PRK07791 28 AEGARVVVN 36 (286)
T ss_pred HCCCEEEEe
Confidence 455555544
No 404
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=58.40 E-value=52 Score=21.89 Aligned_cols=8 Identities=25% Similarity=0.273 Sum_probs=3.3
Q ss_pred cCCCEEEE
Q psy17798 68 EKKKHVIT 75 (110)
Q Consensus 68 ~~g~~vl~ 75 (110)
+.|.+|++
T Consensus 25 ~~g~~v~~ 32 (250)
T TIGR03206 25 EEGAKVAV 32 (250)
T ss_pred HCCCEEEE
Confidence 34444443
No 405
>KOG1805|consensus
Probab=58.38 E-value=63 Score=27.48 Aligned_cols=69 Identities=23% Similarity=0.309 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhCCCCCcEEEe---CChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEe
Q psy17798 28 EDARQEIATLINCDPKEIIFT---SGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGS 100 (110)
Q Consensus 28 ~~~R~~la~~l~~~~~~i~~t---~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v 100 (110)
..-|+++-+-+.+..--+|.+ +|=|.-+..+++.|. ..|..|+++...|-++...+.+|...|+.+..+
T Consensus 672 ~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~----~~gkkVLLtsyThsAVDNILiKL~~~~i~~lRL 743 (1100)
T KOG1805|consen 672 NDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILV----ALGKKVLLTSYTHSAVDNILIKLKGFGIYILRL 743 (1100)
T ss_pred HHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHH----HcCCeEEEEehhhHHHHHHHHHHhccCcceeec
Confidence 346777777777765556654 566788888888887 688999999999999999888887666665433
No 406
>PRK07482 hypothetical protein; Provisional
Probab=58.38 E-value=30 Score=26.31 Aligned_cols=35 Identities=11% Similarity=0.149 Sum_probs=24.2
Q ss_pred HHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhH
Q psy17798 29 DARQEIATLINCDPKEIIFTSGATESNNIAVKGVA 63 (110)
Q Consensus 29 ~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~ 63 (110)
++-+.|++.+..+-+.+.|+++++||+..+++...
T Consensus 98 ~lAe~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr 132 (461)
T PRK07482 98 TLSKRIIDRAPAGMSKVYYGLSGSDANETQIKLVW 132 (461)
T ss_pred HHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHH
Confidence 34444444443334689999999999999887653
No 407
>PRK01530 hypothetical protein; Reviewed
Probab=58.22 E-value=12 Score=22.81 Aligned_cols=27 Identities=19% Similarity=0.126 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhCCCCCcEEEeCChHH
Q psy17798 27 VEDARQEIATLINCDPKEIIFTSGATE 53 (110)
Q Consensus 27 ~~~~R~~la~~l~~~~~~i~~t~gat~ 53 (110)
=+++.+.+|+.|+++..+|-+.+|.|.
T Consensus 55 N~ali~~LAk~l~v~ks~I~IvsG~tS 81 (105)
T PRK01530 55 NEEIINYLAKEWKLSRSNIEIIKGHTH 81 (105)
T ss_pred HHHHHHHHHHHhCCChhhEEEEecCCC
Confidence 357888899999999999999998654
No 408
>PRK07483 hypothetical protein; Provisional
Probab=57.95 E-value=61 Score=24.51 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=23.4
Q ss_pred HHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHh
Q psy17798 29 DARQEIATLINCDPKEIIFTSGATESNNIAVKGV 62 (110)
Q Consensus 29 ~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l 62 (110)
++-+.|++.+....+.+.|+++++||+..+++..
T Consensus 77 ~lae~L~~~~p~~~~~v~f~~sGsEAve~AlklA 110 (443)
T PRK07483 77 ALADRLVAAAPAGLEHVYFVSGGSEAVEAALKLA 110 (443)
T ss_pred HHHHHHHHhCCCCCCEEEEcCCcHHHHHHHHHHH
Confidence 3444444444323368999999999999888754
No 409
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=57.73 E-value=23 Score=18.53 Aligned_cols=25 Identities=12% Similarity=0.151 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcEEE
Q psy17798 23 SEKAVEDARQEIATLINCDPKEIIF 47 (110)
Q Consensus 23 ~~~~~~~~R~~la~~l~~~~~~i~~ 47 (110)
-.+.+..+.+.+++.+++++++|.+
T Consensus 17 k~~l~~~it~~l~~~~~~p~~~v~V 41 (61)
T PRK02220 17 LKALVKDVTAAVSKNTGAPAEHIHV 41 (61)
T ss_pred HHHHHHHHHHHHHHHhCcChhhEEE
Confidence 3467888889999999998887543
No 410
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=57.56 E-value=55 Score=21.89 Aligned_cols=17 Identities=12% Similarity=0.110 Sum_probs=7.0
Q ss_pred cEEEeCChHHHHHHHHH
Q psy17798 44 EIIFTSGATESNNIAVK 60 (110)
Q Consensus 44 ~i~~t~gat~a~~~i~~ 60 (110)
+|+++.........+..
T Consensus 26 ~v~~~~r~~~~~~~~~~ 42 (254)
T TIGR02415 26 AVAVADLNEETAKETAK 42 (254)
T ss_pred EEEEEeCCHHHHHHHHH
Confidence 45544433333333333
No 411
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=57.35 E-value=67 Score=23.90 Aligned_cols=53 Identities=17% Similarity=0.204 Sum_probs=32.2
Q ss_pred HHHHHHHHhCC-CCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHH
Q psy17798 30 ARQEIATLINC-DPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVL 84 (110)
Q Consensus 30 ~R~~la~~l~~-~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~ 84 (110)
+-+.+++++.. ..+.+.|+++++||+..+++... .+ ..+.+|+.-...|+...
T Consensus 81 la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr-~~-tgr~~ii~~~~~yHG~t 134 (420)
T TIGR00700 81 LAEKLNRIAPGSGPKKSVFFNSGAEAVENAVKIAR-SY-TGRPGVVAFDHGFHGRT 134 (420)
T ss_pred HHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHH-Hh-cCCCcEEEECCCcCCCc
Confidence 33444444421 23689999999999998887543 22 34456765555555543
No 412
>PRK08246 threonine dehydratase; Provisional
Probab=56.92 E-value=70 Score=22.89 Aligned_cols=82 Identities=13% Similarity=0.058 Sum_probs=46.6
Q ss_pred hhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHH
Q psy17798 5 LTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVL 84 (110)
Q Consensus 5 ~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~ 84 (110)
+...+.||.. ++. -|.+...+..+++ ..+.|+..+++..++.++..+-.. .=.-.|+++..-.+.
T Consensus 41 ~K~E~~nptG-S~K-~R~a~~~~~~~~~--------~~~~vv~aSsGN~g~a~A~~a~~~---G~~~~iv~p~~~~~~-- 105 (310)
T PRK08246 41 LKLEHLQHTG-SFK-ARGAFNRLLAAPV--------PAAGVVAASGGNAGLAVAYAAAAL---GVPATVFVPETAPPA-- 105 (310)
T ss_pred EEECCCCCCC-CCH-HHHHHHHHHhhcc--------cCCeEEEeCCCHHHHHHHHHHHHc---CCCEEEEECCCCcHH--
Confidence 3445678864 333 3333333332221 346688888888888777665442 334566665433232
Q ss_pred HHHHHHHhCCcEEEEecC
Q psy17798 85 DSCRILEGEGFNVLGSNP 102 (110)
Q Consensus 85 ~~~~~l~~~g~~v~~v~~ 102 (110)
-...++..|++|+.++-
T Consensus 106 -k~~~~~~~GA~V~~~~~ 122 (310)
T PRK08246 106 -KVARLRALGAEVVVVGA 122 (310)
T ss_pred -HHHHHHHCCCEEEEeCC
Confidence 23445778999988763
No 413
>PRK07678 aminotransferase; Validated
Probab=56.86 E-value=58 Score=24.64 Aligned_cols=52 Identities=15% Similarity=0.245 Sum_probs=31.6
Q ss_pred HHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhcc-----CCCEEEEcCCCChh
Q psy17798 29 DARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKE-----KKKHVITTQTEHKC 82 (110)
Q Consensus 29 ~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~-----~g~~vl~~~~e~ps 82 (110)
++-+.|++++.. .+.+.|+++++||+..+++.... +.+ .+.+||.-...|+.
T Consensus 93 ~lae~l~~~~~~-~~~v~f~~sGseA~e~AlklAr~-~t~~~g~~~r~~ii~~~~~yHG 149 (451)
T PRK07678 93 KLAEKLNEWLGG-EYVIFFSNSGSEANETAFKIARQ-YHAQKGEPHRYKFISRYRAYHG 149 (451)
T ss_pred HHHHHHHHhCCC-CCEEEEeCCcHHHHHHHHHHHHH-HHHhcCCCCCcEEEEECCCcCC
Confidence 444555555543 35799999999999988875432 211 23567654444444
No 414
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=56.73 E-value=71 Score=23.88 Aligned_cols=49 Identities=22% Similarity=0.225 Sum_probs=29.6
Q ss_pred HHHHHHhCC-CCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChh
Q psy17798 32 QEIATLINC-DPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKC 82 (110)
Q Consensus 32 ~~la~~l~~-~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps 82 (110)
+.+++++.. ..+.+.|+++++||+..+++... .+ ..+.+|+.-...|+.
T Consensus 90 ~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr-~~-tgr~~ii~~~~~yHG 139 (421)
T PRK06777 90 ERINALAPIDGPAKTAFFTTGAEAVENAVKIAR-AY-TGRPGVIAFGGAFHG 139 (421)
T ss_pred HHHHHhCCCCCCceEEEeCCcHHHHHHHHHHHH-Hh-hCCCeEEEEcCCcCC
Confidence 334444332 24689999999999999887543 22 344566654433443
No 415
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=56.56 E-value=76 Score=24.34 Aligned_cols=39 Identities=13% Similarity=0.114 Sum_probs=26.9
Q ss_pred CCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChh
Q psy17798 42 PKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKC 82 (110)
Q Consensus 42 ~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps 82 (110)
.+.+.|++++|||+..+++... .+ ..+++|+.-...|+.
T Consensus 155 ~~~v~f~~SGsEA~e~AlklAR-~~-tgr~~Ii~~~g~YHG 193 (474)
T PLN02482 155 VEMVRFVNSGTEACMGVLRLAR-AY-TGREKIIKFEGCYHG 193 (474)
T ss_pred CCEEEEeCChHHHHHHHHHHHH-Hh-cCCCEEEEECCccCC
Confidence 4789999999999998887543 22 345667654444444
No 416
>PLN02862 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
Probab=55.56 E-value=8.6 Score=26.42 Aligned_cols=34 Identities=18% Similarity=0.314 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHH
Q psy17798 23 SEKAVEDARQEIATLINCDPKEIIFTSGATESNN 56 (110)
Q Consensus 23 ~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~ 56 (110)
..+..++.|+.|++.|++++++|-+..-++|.+.
T Consensus 164 i~p~~~~m~~~La~lL~i~~~~VnIKAtT~E~LG 197 (216)
T PLN02862 164 LSPHKEAIRSNLSKLLGADPSVVNLKAKTHEKVD 197 (216)
T ss_pred chHHHHHHHHHHHHHhCCCcceEEEEEecCCCCC
Confidence 4567888999999999999999988888888754
No 417
>PRK07024 short chain dehydrogenase; Provisional
Probab=55.18 E-value=58 Score=22.00 Aligned_cols=6 Identities=0% Similarity=0.074 Sum_probs=2.4
Q ss_pred cEEEeC
Q psy17798 44 EIIFTS 49 (110)
Q Consensus 44 ~i~~t~ 49 (110)
+|+++.
T Consensus 28 ~v~~~~ 33 (257)
T PRK07024 28 TLGLVA 33 (257)
T ss_pred EEEEEe
Confidence 344443
No 418
>PRK01388 arginine deiminase; Provisional
Probab=55.07 E-value=26 Score=26.42 Aligned_cols=67 Identities=16% Similarity=0.091 Sum_probs=40.4
Q ss_pred HHHHHHHHHhCCCCCcEEEeC-----ChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798 29 DARQEIATLINCDPKEIIFTS-----GATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG 103 (110)
Q Consensus 29 ~~R~~la~~l~~~~~~i~~t~-----gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~ 103 (110)
.+.+.+++.+|.+.=+++-+. ...|..+.....+. +.||. ||+. ..+...-+.|++.|++|..++.+
T Consensus 314 ~l~~~L~~~lg~~~~~lI~~ggd~~~~~~Eq~~~g~N~l~---i~pg~-Vv~~----~~n~~t~~~L~~~G~~v~~i~~~ 385 (406)
T PRK01388 314 PFLEVLAEALGLDKLRVIETGGDDIAAEREQWNDGNNTLA---IAPGV-VVAY----DRNTVTNALLRKAGIEVITIPGS 385 (406)
T ss_pred CHHHHHHHHhCCCCceEEecCCCcccchHHHHhcCCCEEE---ecCCE-EEEe----CCcHHHHHHHHHCCCEEEEeChH
Confidence 477788888887655666664 33344444444443 24544 4332 22334456678899999999876
No 419
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=54.98 E-value=27 Score=18.56 Aligned_cols=25 Identities=4% Similarity=0.232 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcEEE
Q psy17798 23 SEKAVEDARQEIATLINCDPKEIIF 47 (110)
Q Consensus 23 ~~~~~~~~R~~la~~l~~~~~~i~~ 47 (110)
-.+.+..+-+.+++.++++++.+.+
T Consensus 17 k~~l~~~it~~l~~~lg~p~~~v~V 41 (64)
T PRK01964 17 IKNLIREVTEAISATLDVPKERVRV 41 (64)
T ss_pred HHHHHHHHHHHHHHHhCcChhhEEE
Confidence 3467888889999999999887543
No 420
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=54.94 E-value=36 Score=25.70 Aligned_cols=34 Identities=24% Similarity=0.317 Sum_probs=23.2
Q ss_pred HHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHh
Q psy17798 29 DARQEIATLINCDPKEIIFTSGATESNNIAVKGV 62 (110)
Q Consensus 29 ~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l 62 (110)
++-+.|++++....+.|.|+++++||+..+++..
T Consensus 96 ~la~~L~~~~p~~~~~v~f~~sGseAve~AlklA 129 (445)
T PRK09221 96 ELAERLAELAPGGLDHVFFTNSGSESVDTALKIA 129 (445)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHH
Confidence 3444444444322468999999999999888754
No 421
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=54.83 E-value=56 Score=21.57 Aligned_cols=56 Identities=11% Similarity=0.176 Sum_probs=37.4
Q ss_pred CcEEEeCChHHHHHHHHHHhHHhh-------cc-CCCEEEEc-----CCCChhHHHHHHHHHhCCcEEE
Q psy17798 43 KEIIFTSGATESNNIAVKGVARFY-------KE-KKKHVITT-----QTEHKCVLDSCRILEGEGFNVL 98 (110)
Q Consensus 43 ~~i~~t~gat~a~~~i~~~l~~~~-------~~-~g~~vl~~-----~~e~ps~~~~~~~l~~~g~~v~ 98 (110)
|-+++.+.+..-+..+..++.-.. .+ ....++.+ -.+||.+...++.|++.|+.+.
T Consensus 78 D~~vVaPaSanTlakiA~GiaDnLlt~~a~a~~~~~pv~i~PaMn~~M~~~p~~~~nl~~L~~~G~~vi 146 (177)
T TIGR02113 78 DLFLVAPASANTIAHLAHGFADNIVTSVALALPPETPKLIAPAMNTKMYQNPITQRNIKILKKIGYQEI 146 (177)
T ss_pred CEEEEEeCCHHHHHHHHcCcCCcHHHHHHHHcCCCCCEEEEeCCCHHHhCCHHHHHHHHHHHHCCCEEE
Confidence 557777877777777766654110 12 33445544 2799999999999988897654
No 422
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=54.80 E-value=55 Score=25.00 Aligned_cols=42 Identities=21% Similarity=0.272 Sum_probs=30.2
Q ss_pred CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHH
Q psy17798 43 KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDS 86 (110)
Q Consensus 43 ~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~ 86 (110)
+.|-|++++|||...+++.. +.+ ..+|+|+.-+..|+.-.-.
T Consensus 110 e~vrfvnSGTEAtmsAiRlA-Ra~-TgR~kIikF~G~YHG~~D~ 151 (432)
T COG0001 110 EKVRFVNSGTEATMSAIRLA-RAY-TGRDKIIKFEGCYHGHSDS 151 (432)
T ss_pred cEEEEecchhHHHHHHHHHH-HHh-hCCCeEEEEcCCCCCCccH
Confidence 78999999999999888743 333 4667787766666654443
No 423
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=54.69 E-value=62 Score=21.58 Aligned_cols=12 Identities=0% Similarity=0.122 Sum_probs=5.0
Q ss_pred cEEEeCChHHHH
Q psy17798 44 EIIFTSGATESN 55 (110)
Q Consensus 44 ~i~~t~gat~a~ 55 (110)
+|+.+.-..+..
T Consensus 27 ~v~~~~r~~~~~ 38 (255)
T TIGR01963 27 NVVVNDLGEAGA 38 (255)
T ss_pred EEEEEeCCHHHH
Confidence 455444333333
No 424
>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
Probab=54.67 E-value=28 Score=26.68 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhC-CCCCcEEEeCChHHHHHHHHHHhH
Q psy17798 27 VEDARQEIATLIN-CDPKEIIFTSGATESNNIAVKGVA 63 (110)
Q Consensus 27 ~~~~R~~la~~l~-~~~~~i~~t~gat~a~~~i~~~l~ 63 (110)
..++-+.|+++.. -+-+.|+|++|+++|+..+++...
T Consensus 89 a~~LA~~L~~~aP~~~l~~vFf~~sGSeAvEtAlKma~ 126 (449)
T COG0161 89 AIELAEKLAELAPEGGLDHVFFTDSGSEAVETALKMAL 126 (449)
T ss_pred HHHHHHHHHHhCCCCCccEEEEeCCchHHHHHHHHHHH
Confidence 4566666777665 335789999999999999987554
No 425
>PRK07036 hypothetical protein; Provisional
Probab=53.67 E-value=38 Score=25.80 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=22.1
Q ss_pred HHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHh
Q psy17798 30 ARQEIATLINCDPKEIIFTSGATESNNIAVKGV 62 (110)
Q Consensus 30 ~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l 62 (110)
+-+.+++.+..+-+.|.|+++++||+..+++..
T Consensus 100 lae~L~~~~p~~~~~v~f~~sGseAve~AlklA 132 (466)
T PRK07036 100 LAAKLAELAPGDLNHVFLTTGGSTAVDSALRFV 132 (466)
T ss_pred HHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHH
Confidence 333344433222368999999999999888754
No 426
>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=53.64 E-value=41 Score=25.76 Aligned_cols=21 Identities=14% Similarity=0.297 Sum_probs=18.3
Q ss_pred CCcEEEeCChHHHHHHHHHHh
Q psy17798 42 PKEIIFTSGATESNNIAVKGV 62 (110)
Q Consensus 42 ~~~i~~t~gat~a~~~i~~~l 62 (110)
-+.+.|+++++||+..+++..
T Consensus 122 ~~~v~f~~SGsEAvE~AlKlA 142 (464)
T TIGR00699 122 QDQVWTGMSGSDANELAFKAA 142 (464)
T ss_pred cCEEEEeCCcHHHHHHHHHHH
Confidence 368999999999999988755
No 427
>PRK05090 hypothetical protein; Validated
Probab=53.58 E-value=17 Score=21.64 Aligned_cols=26 Identities=8% Similarity=0.158 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhCCCCCcEEEeCChHH
Q psy17798 28 EDARQEIATLINCDPKEIIFTSGATE 53 (110)
Q Consensus 28 ~~~R~~la~~l~~~~~~i~~t~gat~ 53 (110)
+++-+.+|+.|+++..+|-+.+|.+.
T Consensus 49 ~ali~~LAk~l~v~ks~I~i~~G~ts 74 (95)
T PRK05090 49 AHLLKFLAKQFRVAKSQVVIEKGELG 74 (95)
T ss_pred HHHHHHHHHHhCCChhhEEEEecCCC
Confidence 46778899999999999999998654
No 428
>PF14552 Tautomerase_2: Tautomerase enzyme; PDB: 2AAG_C 2AAL_A 2AAJ_A 1MWW_C.
Probab=53.31 E-value=23 Score=20.42 Aligned_cols=24 Identities=8% Similarity=0.288 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEe
Q psy17798 25 KAVEDARQEIATLINCDPKEIIFT 48 (110)
Q Consensus 25 ~~~~~~R~~la~~l~~~~~~i~~t 48 (110)
+.+..+-+.|++-+|.+|++|+++
T Consensus 47 ~ly~~l~~~L~~~~gi~p~Dv~I~ 70 (82)
T PF14552_consen 47 ALYRALAERLAEKLGIRPEDVMIV 70 (82)
T ss_dssp HHHHHHHHHHHHHH---GGGEEEE
T ss_pred HHHHHHHHHHHHHcCCCHHHEEEE
Confidence 456667777777788999997765
No 429
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=53.31 E-value=38 Score=25.47 Aligned_cols=35 Identities=14% Similarity=0.261 Sum_probs=23.7
Q ss_pred HHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhH
Q psy17798 29 DARQEIATLINCDPKEIIFTSGATESNNIAVKGVA 63 (110)
Q Consensus 29 ~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~ 63 (110)
++-+.+++.+..+-+.|.|+++++||+..+++...
T Consensus 91 ~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr 125 (429)
T PRK06173 91 ELAQKLLEILPPSLNKIFFADSGSVAVEVAMKMAL 125 (429)
T ss_pred HHHHHHHhhCCCCcCEEEEeCCchHHHHHHHHHHH
Confidence 34444444443234689999999999998887543
No 430
>PRK06541 hypothetical protein; Provisional
Probab=53.27 E-value=36 Score=25.84 Aligned_cols=34 Identities=26% Similarity=0.361 Sum_probs=23.5
Q ss_pred HHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHh
Q psy17798 29 DARQEIATLINCDPKEIIFTSGATESNNIAVKGV 62 (110)
Q Consensus 29 ~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l 62 (110)
++-+.+++.+..+.+.+.|+++++||+..+++..
T Consensus 99 ~la~~l~~~~p~~~~~v~f~~sGseAve~AlklA 132 (460)
T PRK06541 99 ELAERLAALAPGDLNRVFFTTGGSEAVESAWKLA 132 (460)
T ss_pred HHHHHHHHhCCCCcCEEEEcCCcHHHHHHHHHHH
Confidence 3444454544333468999999999999888754
No 431
>PRK10717 cysteine synthase A; Provisional
Probab=53.20 E-value=83 Score=22.63 Aligned_cols=87 Identities=15% Similarity=0.169 Sum_probs=49.3
Q ss_pred hhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCC-CC-CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCCh
Q psy17798 4 YLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINC-DP-KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHK 81 (110)
Q Consensus 4 ~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~-~~-~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~p 81 (110)
|+.....||.. ++ .-|.+.-.+..+++ + +. .+ +.|+-.+++-.+..+.+.+-.. .=.-.|+++....+
T Consensus 31 ~~K~E~~nptG-S~-K~Rga~~~v~~a~~---~--g~~~~g~~vv~aSsGN~g~alA~~a~~~---G~~~~vv~p~~~~~ 100 (330)
T PRK10717 31 LGKAEFLNPGG-SV-KDRAALNIIWDAEK---R--GLLKPGGTIVEGTAGNTGIGLALVAAAR---GYKTVIVMPETQSQ 100 (330)
T ss_pred EEEeeccCCCC-Cc-hHHHHHHHHHHHHH---c--CCCCCCCEEEEeCCcHHHHHHHHHHHHc---CCcEEEEeCCCCCH
Confidence 34455678874 43 33444434433332 2 32 33 4577778888877776655431 33356777655443
Q ss_pred hHHHHHHHHHhCCcEEEEecCC
Q psy17798 82 CVLDSCRILEGEGFNVLGSNPG 103 (110)
Q Consensus 82 s~~~~~~~l~~~g~~v~~v~~~ 103 (110)
. -...++..|++|+.++-+
T Consensus 101 ~---k~~~~~~~GA~V~~~~~~ 119 (330)
T PRK10717 101 E---KKDLLRALGAELVLVPAA 119 (330)
T ss_pred H---HHHHHHHcCCEEEEeCCc
Confidence 3 334557789999988753
No 432
>PRK11761 cysM cysteine synthase B; Provisional
Probab=53.06 E-value=81 Score=22.44 Aligned_cols=85 Identities=9% Similarity=0.100 Sum_probs=48.7
Q ss_pred hhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCC-CC-CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChh
Q psy17798 5 LTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINC-DP-KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKC 82 (110)
Q Consensus 5 ~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~-~~-~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps 82 (110)
+...+.||.. + ..-|.+...+..+++. +. .+ +.|+-.+++..+..++..+-.. .=.-.|++++...+.
T Consensus 31 ~K~E~~nptG-S-~K~R~a~~~~~~a~~~-----g~~~~g~~vv~aSsGN~g~alA~~a~~~---G~~~~i~~p~~~~~~ 100 (296)
T PRK11761 31 AKLEGNNPAG-S-VKDRPALSMIVQAEKR-----GEIKPGDTLIEATSGNTGIALAMIAAIK---GYRMKLIMPENMSQE 100 (296)
T ss_pred EEEcccCCCC-C-chhHHHHHHHHHHHHc-----CCCCCCCEEEEeCCChHHHHHHHHHHHc---CCCEEEEECCCCCHH
Confidence 3445678863 3 3334444455544332 32 22 5688888888888777665431 223456665443333
Q ss_pred HHHHHHHHHhCCcEEEEecC
Q psy17798 83 VLDSCRILEGEGFNVLGSNP 102 (110)
Q Consensus 83 ~~~~~~~l~~~g~~v~~v~~ 102 (110)
-...++..|++|+.++-
T Consensus 101 ---k~~~~~~~GA~v~~~~~ 117 (296)
T PRK11761 101 ---RRAAMRAYGAELILVPK 117 (296)
T ss_pred ---HHHHHHHcCCEEEEeCC
Confidence 23444678999999874
No 433
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=53.00 E-value=64 Score=21.24 Aligned_cols=31 Identities=23% Similarity=0.294 Sum_probs=19.5
Q ss_pred ccCCCEEEEcCCCChhHHHHHHHHHhCCcEE
Q psy17798 67 KEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97 (110)
Q Consensus 67 ~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v 97 (110)
+++|..+++..............+++.|+++
T Consensus 135 LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~~ 165 (198)
T PRK00377 135 IKKGGRIVIDAILLETVNNALSALENIGFNL 165 (198)
T ss_pred cCCCcEEEEEeecHHHHHHHHHHHHHcCCCe
Confidence 4788888865544444455566666777543
No 434
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=52.47 E-value=78 Score=22.11 Aligned_cols=73 Identities=19% Similarity=0.186 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHhC--CCCCcEEEeCChHHHHHHHHHHhHHhhccCC--CEEEEcCCCChhHHH--HHHHHHhCCcEEE
Q psy17798 25 KAVEDARQEIATLIN--CDPKEIIFTSGATESNNIAVKGVARFYKEKK--KHVITTQTEHKCVLD--SCRILEGEGFNVL 98 (110)
Q Consensus 25 ~~~~~~R~~la~~l~--~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g--~~vl~~~~e~ps~~~--~~~~l~~~g~~v~ 98 (110)
+.+..+++.+++..- ....++++|-|-+..+..++.... +.| -+|++.+ ..|.... ..+.|.+.|+++.
T Consensus 88 ~e~~~~~~~I~~~~~~~I~~~~~ILT~~~S~~v~~~l~~a~----~~~~~~~V~v~e-s~P~~eG~~~a~~L~~~gi~v~ 162 (282)
T PF01008_consen 88 DEIEQAREKIADHASELINDGDTILTHGYSSTVERFLLSAK----KKGKKFRVIVLE-SRPYNEGRLMAKELAEAGIPVT 162 (282)
T ss_dssp HHHHHHHHHHHHHHHCCC-TTEEEEEES--SHHHHHHHHHH----HTTEEEEEEEE---TTTTHHHTHHHHHHHTT-EEE
T ss_pred hHHHHHHHHHHHHHHHhccCCeEEEEeCCchHHHHHHHHHH----HcCCeEEEEEcc-CCcchhhhhHHHHhhhcceeEE
Confidence 345556666665542 355678888777776665555533 233 3555554 3333333 4455677899999
Q ss_pred EecC
Q psy17798 99 GSNP 102 (110)
Q Consensus 99 ~v~~ 102 (110)
.++-
T Consensus 163 ~i~d 166 (282)
T PF01008_consen 163 LIPD 166 (282)
T ss_dssp EE-G
T ss_pred EEec
Confidence 9874
No 435
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=51.97 E-value=82 Score=22.22 Aligned_cols=86 Identities=16% Similarity=0.132 Sum_probs=47.0
Q ss_pred hhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCC-CC-CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChh
Q psy17798 5 LTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINC-DP-KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKC 82 (110)
Q Consensus 5 ~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~-~~-~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps 82 (110)
+.....||.. ++ .-|.+...+..+++. +. .+ +.|+-.+++..+..++..+-.. .=.-.|+++....+.
T Consensus 25 ~K~E~~nptG-S~-K~R~a~~~l~~a~~~-----g~~~~g~~vv~aSsGN~g~alA~~a~~~---Gl~~~i~vp~~~~~~ 94 (298)
T TIGR01139 25 VKLEGRNPSG-SV-KDRIALNMIWDAEKR-----GLLKPGKTIVEPTSGNTGIALAMVAAAR---GYKLILTMPETMSIE 94 (298)
T ss_pred EEEcccCCCC-cc-hHHHHHHHHHHHHHc-----CCCCCCCEEEEeCCChhHHHHHHHHHHc---CCeEEEEeCCccCHH
Confidence 3445668863 33 334444344333322 32 22 4577777777777766654331 223467766544444
Q ss_pred HHHHHHHHHhCCcEEEEecCC
Q psy17798 83 VLDSCRILEGEGFNVLGSNPG 103 (110)
Q Consensus 83 ~~~~~~~l~~~g~~v~~v~~~ 103 (110)
. ...++..|++|+.++-+
T Consensus 95 k---~~~~~~~GA~v~~~~~~ 112 (298)
T TIGR01139 95 R---RKLLKAYGAELVLTPGA 112 (298)
T ss_pred H---HHHHHHcCCEEEEECCC
Confidence 3 34457789999988753
No 436
>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=51.49 E-value=43 Score=25.52 Aligned_cols=34 Identities=6% Similarity=0.167 Sum_probs=23.2
Q ss_pred HHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHh
Q psy17798 29 DARQEIATLINCDPKEIIFTSGATESNNIAVKGV 62 (110)
Q Consensus 29 ~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l 62 (110)
++-+.+++.+....+.|.|+++++||+..+++..
T Consensus 94 ~lae~L~~~~p~~~~~v~f~~sGsEAve~AlKlA 127 (466)
T PRK07030 94 ELSERLVKITPPGLSRCFYADNGSSAIEVALKMS 127 (466)
T ss_pred HHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHH
Confidence 3444444443323368999999999999888754
No 437
>PRK05866 short chain dehydrogenase; Provisional
Probab=51.37 E-value=82 Score=22.04 Aligned_cols=55 Identities=11% Similarity=0.146 Sum_probs=24.1
Q ss_pred EEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798 45 IIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG 103 (110)
Q Consensus 45 i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~ 103 (110)
+++|.++...=..++..+. +.|-+|++..-..+........+...+.++..++.|
T Consensus 43 vlItGasggIG~~la~~La----~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~D 97 (293)
T PRK05866 43 ILLTGASSGIGEAAAEQFA----RRGATVVAVARREDLLDAVADRITRAGGDAMAVPCD 97 (293)
T ss_pred EEEeCCCcHHHHHHHHHHH----HCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 5555444332223334443 566676665443332222222233334455555554
No 438
>PRK13912 nuclease NucT; Provisional
Probab=51.17 E-value=67 Score=20.95 Aligned_cols=55 Identities=11% Similarity=0.108 Sum_probs=28.7
Q ss_pred CCcEEEeCC-hHHHHHHHHHHhHHhhccCCCEEEEcC--CCChhHHHHHHHHHhCCcEEEEe
Q psy17798 42 PKEIIFTSG-ATESNNIAVKGVARFYKEKKKHVITTQ--TEHKCVLDSCRILEGEGFNVLGS 100 (110)
Q Consensus 42 ~~~i~~t~g-at~a~~~i~~~l~~~~~~~g~~vl~~~--~e~ps~~~~~~~l~~~g~~v~~v 100 (110)
.+++.|++- ..++...++..+. +..+.|.+.. ..++.....+..+.++|++|+.+
T Consensus 21 ~~~~~~~P~~~~~~~~~l~~~I~----~Ak~sI~i~~Y~~~~~~i~~aL~~Aa~RGV~VrIl 78 (177)
T PRK13912 21 KSSLYFLPYEQKDALNKLVSLIS----NARSSIKIAIYSFTHKDIAKALKSAAKRGVKISII 78 (177)
T ss_pred cceEEECCCChHHHHHHHHHHHH----hcccEEEEEEEEEchHHHHHHHHHHHHCCCEEEEE
Confidence 456666663 3455555555554 3444444332 33444444444445667777665
No 439
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=51.12 E-value=24 Score=24.54 Aligned_cols=32 Identities=25% Similarity=0.269 Sum_probs=17.4
Q ss_pred CCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcC
Q psy17798 42 PKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQ 77 (110)
Q Consensus 42 ~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~ 77 (110)
...|.+|.|++.- -.+|..+|++-|.+||++.
T Consensus 5 gnTiLITGG~sGI----Gl~lak~f~elgN~VIi~g 36 (245)
T COG3967 5 GNTILITGGASGI----GLALAKRFLELGNTVIICG 36 (245)
T ss_pred CcEEEEeCCcchh----hHHHHHHHHHhCCEEEEec
Confidence 3457777776652 2233333446677776653
No 440
>PRK09731 putative general secretion pathway protein YghD; Provisional
Probab=50.83 E-value=39 Score=22.54 Aligned_cols=38 Identities=13% Similarity=0.052 Sum_probs=30.3
Q ss_pred EEEEcCCCChhHHHHHHHHH-hCCcEEEEecCCC---Ccccc
Q psy17798 72 HVITTQTEHKCVLDSCRILE-GEGFNVLGSNPGQ---GGNFL 109 (110)
Q Consensus 72 ~vl~~~~e~ps~~~~~~~l~-~~g~~v~~v~~~~---~G~~~ 109 (110)
.|-+.+.+|+.....+..++ +.|++|..+.+++ .|.++
T Consensus 128 QVwld~v~F~~ll~WL~~L~~q~GV~V~~ldl~~~~~pG~V~ 169 (178)
T PRK09731 128 QVWIEPVVFNDLLNWLNALDEKYALRVTQIDVSAAEKPGMVN 169 (178)
T ss_pred EEEECCCCHHHHHHHHHHHHHhcCceEEEEeeecCCCCCEEE
Confidence 46777899999988888884 6799999988774 57664
No 441
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=50.67 E-value=82 Score=22.64 Aligned_cols=42 Identities=14% Similarity=0.167 Sum_probs=25.8
Q ss_pred CCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHH
Q psy17798 41 DPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSC 87 (110)
Q Consensus 41 ~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~ 87 (110)
+-+.|+|+.|+...+.-.++.... .+.++|++ .+.|-+..+.
T Consensus 272 ~~~~I~~vGGGA~ll~~~Ik~~~~---~~~~~i~i--~~~pqfAnv~ 313 (318)
T PF06406_consen 272 DIDRIFFVGGGAILLKDAIKEAFP---VPNERIVI--VDDPQFANVR 313 (318)
T ss_dssp S-SEEEEESTTHHHHHHHHHHHHT-----GGGEE----SSGGGHHHH
T ss_pred cCCeEEEECCcHHHHHHHHHHhhC---CCCCcEEE--CCCchhhHHH
Confidence 457899999999988877776641 23455554 4666655443
No 442
>PRK01310 hypothetical protein; Validated
Probab=50.50 E-value=21 Score=21.64 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhCCCCCcEEEeCChHH
Q psy17798 27 VEDARQEIATLINCDPKEIIFTSGATE 53 (110)
Q Consensus 27 ~~~~R~~la~~l~~~~~~i~~t~gat~ 53 (110)
=+++.+.+|+.|+++..+|-+.+|.+.
T Consensus 54 N~ali~~LA~~l~v~ks~I~iv~G~ts 80 (104)
T PRK01310 54 NRALIELLAKALGVPKSSVRLLSGATS 80 (104)
T ss_pred HHHHHHHHHHHhCCChhhEEEEecCCC
Confidence 356788899999999999999888643
No 443
>KOG3846|consensus
Probab=50.20 E-value=16 Score=26.96 Aligned_cols=66 Identities=9% Similarity=0.072 Sum_probs=47.6
Q ss_pred HHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCcE
Q psy17798 30 ARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFN 96 (110)
Q Consensus 30 ~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~ 96 (110)
.-..++...|+..++|.+.++-|--++.++.++... .+++-+|++..-.+||-..+.+.- +-.|..
T Consensus 116 il~l~~~iVGA~e~EvavmNsLTvNlh~Ll~sFyKP-TekR~KILlE~kaFPSDhYAiesQ~~lhG~~ 182 (465)
T KOG3846|consen 116 ILPLLAPIVGAQENEVAVMNSLTVNLHSLLISFYKP-TEKRFKILLEKKAFPSDHYAIESQCKLHGIS 182 (465)
T ss_pred hhhhhhhhccCCchhhhhHhhhhhHHHHHHHHhcCC-cchhhhhhhccCCCCchHHHHHhhhhhcCCC
Confidence 445567777888999999999999999988887621 123347888888888887776654 445553
No 444
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=49.95 E-value=36 Score=17.45 Aligned_cols=25 Identities=8% Similarity=0.329 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcEEE
Q psy17798 23 SEKAVEDARQEIATLINCDPKEIIF 47 (110)
Q Consensus 23 ~~~~~~~~R~~la~~l~~~~~~i~~ 47 (110)
-.+...++.+.+++.+|++++.+.+
T Consensus 16 k~~l~~~i~~~l~~~~g~~~~~v~V 40 (58)
T cd00491 16 KRELIERVTEAVSEILGAPEATIVV 40 (58)
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEE
Confidence 3467778888899999998776543
No 445
>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.
Probab=49.87 E-value=68 Score=24.05 Aligned_cols=54 Identities=9% Similarity=0.195 Sum_probs=30.5
Q ss_pred HHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhh-c--c-CCCEEEEcCCCChhH
Q psy17798 30 ARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFY-K--E-KKKHVITTQTEHKCV 83 (110)
Q Consensus 30 ~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~-~--~-~g~~vl~~~~e~ps~ 83 (110)
+-+.+++.+...-+.+.|+.++++|+..+++...... . . .+.+||.-..-|+..
T Consensus 93 la~~l~~~~~~~~~~v~f~~sGseA~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~ 150 (427)
T TIGR00508 93 LCQKLVKMTPNALDCVFLADSGSVAVEVALKMALQYWQAKGEKNRQKFLTIRSGYHGD 150 (427)
T ss_pred HHHHHHhhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCc
Confidence 3333444433233689999999999998887543210 0 1 234566555444443
No 446
>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.
Probab=49.76 E-value=5.4 Score=29.59 Aligned_cols=68 Identities=13% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHH---HHHHHHhCCcEEEEecC
Q psy17798 28 EDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLD---SCRILEGEGFNVLGSNP 102 (110)
Q Consensus 28 ~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~---~~~~l~~~g~~v~~v~~ 102 (110)
..+.+.++.+.+| +.-++++|...|+.+++.++. +|.+||++..|---+-. .-+.++..|++++.|-.
T Consensus 50 ~~v~~ll~~ltgA--eaA~VvNnnaAAv~L~l~~la-----~~~EvIvsRGelVeiGgsFRip~vm~~sGa~lvEVGt 120 (367)
T PF03841_consen 50 AHVEELLCELTGA--EAALVVNNNAAAVLLALNTLA-----KGKEVIVSRGELVEIGGSFRIPDVMRQSGARLVEVGT 120 (367)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred ccccccccccccc--ccccccccccccccccccccc-----ccccccccccccccccccccccccccccccccccccc
Confidence 4455556666665 456778888888888888876 56788888655443322 33445667888777653
No 447
>PRK04017 hypothetical protein; Provisional
Probab=49.73 E-value=65 Score=20.43 Aligned_cols=50 Identities=26% Similarity=0.211 Sum_probs=28.4
Q ss_pred CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHH---HHHHHhCCcEE
Q psy17798 43 KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDS---CRILEGEGFNV 97 (110)
Q Consensus 43 ~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~---~~~l~~~g~~v 97 (110)
.+++.|+|.. ++-...-+.. +..+.|++++.+.+.-... ...++..|+.+
T Consensus 44 ~~iI~t~g~~--~~~~~e~ia~---~~r~VIILTD~D~~GekIr~~l~~~l~~~G~~v 96 (132)
T PRK04017 44 GEIIKVSRTP--LAEIAELIAS---RGKEVIILTDFDRKGEELAKKLSEYLQGYGIKV 96 (132)
T ss_pred ccEEEECCee--cchHHHHHHh---cCCeEEEEECCCcchHHHHHHHHHHHHhCCCCc
Confidence 3677777753 2333222221 5667888899999886542 22234566554
No 448
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=49.45 E-value=4 Score=19.34 Aligned_cols=13 Identities=31% Similarity=0.460 Sum_probs=8.4
Q ss_pred HHHHHHHHhCCCC
Q psy17798 30 ARQEIATLINCDP 42 (110)
Q Consensus 30 ~R~~la~~l~~~~ 42 (110)
.|+.||+++|+.+
T Consensus 4 tr~diA~~lG~t~ 16 (32)
T PF00325_consen 4 TRQDIADYLGLTR 16 (32)
T ss_dssp -HHHHHHHHTS-H
T ss_pred CHHHHHHHhCCcH
Confidence 4777888888754
No 449
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=49.10 E-value=1.1e+02 Score=23.06 Aligned_cols=58 Identities=14% Similarity=0.098 Sum_probs=33.6
Q ss_pred CcEEE-eCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798 43 KEIIF-TSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG 103 (110)
Q Consensus 43 ~~i~~-t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~ 103 (110)
+.++. |+++..+..+++.+-.. .=.-+|+++...+..-..-...++..|++|+.+|-+
T Consensus 118 ~~~vtetssGN~G~alA~aaa~~---Gl~~~V~mp~~s~~~k~~k~~~m~~~GA~Vi~~~~~ 176 (419)
T TIGR01415 118 KRLVTETGAGQWGSALSLAGALF---GLECKVFMVRVSFNQKPYRKYLMELYGAEVIPSPSE 176 (419)
T ss_pred CeEEEecCchHHHHHHHHHHHHc---CCcEEEEEeCCCcccCHHHHHHHHHcCCEEEEECCc
Confidence 35554 56667776666555431 334567776544321122234457799999998864
No 450
>PRK00647 hypothetical protein; Validated
Probab=49.03 E-value=22 Score=21.28 Aligned_cols=27 Identities=11% Similarity=0.283 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhCCCCCcEEEeCChHH
Q psy17798 27 VEDARQEIATLINCDPKEIIFTSGATE 53 (110)
Q Consensus 27 ~~~~R~~la~~l~~~~~~i~~t~gat~ 53 (110)
=+++.+.+|+.|+++..+|-+.+|.+.
T Consensus 43 N~ali~~LAk~l~vpks~I~Iv~G~tS 69 (96)
T PRK00647 43 NDAVIALLAKFLSLPKRDVTLIAGETS 69 (96)
T ss_pred HHHHHHHHHHHhCCChhhEEEEecCCC
Confidence 346788899999999899998888643
No 451
>KOG1251|consensus
Probab=49.00 E-value=54 Score=23.53 Aligned_cols=62 Identities=26% Similarity=0.349 Sum_probs=42.9
Q ss_pred CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHH-----HHHHHHHhCC-cEEEEecCCCCccc
Q psy17798 43 KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVL-----DSCRILEGEG-FNVLGSNPGQGGNF 108 (110)
Q Consensus 43 ~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~-----~~~~~l~~~g-~~v~~v~~~~~G~~ 108 (110)
.+|+|..-+.+.=..++.-+. ++-..+++.+.+||++. .+.+.|++-| ++..+||+...|++
T Consensus 120 a~ii~~e~~~~sRE~va~~lt----ee~g~~~i~Py~~p~vIaGqgTiA~ElleqVg~iDalfvpvgGGGll 187 (323)
T KOG1251|consen 120 ANIIFCEPTVESRESVAKDLT----EETGYYLIHPYNHPSVIAGQGTIALELLEQVGEIDALFVPVGGGGLL 187 (323)
T ss_pred ceEEEecCccchHHHHHHHHH----HhcCcEEeCCCCCcceeeccchHHHHHHHhhCccceEEEeecCcchh
Confidence 457777777776666666665 45566777888999875 4566666666 67788888766653
No 452
>KOG1359|consensus
Probab=48.95 E-value=33 Score=25.24 Aligned_cols=57 Identities=16% Similarity=0.261 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHH
Q psy17798 26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCR 88 (110)
Q Consensus 26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~ 88 (110)
.-..+-..||+|-+ . ++-++-++.-.|+.-++.++. .|.|-|+-.++.|.|...-.+
T Consensus 113 iHk~LE~kiAqfh~-r-ED~ilypscfdANag~feail----~pedAvfSDeLNhASIIdGir 169 (417)
T KOG1359|consen 113 IHKLLESKIAQFHG-R-EDTILYPSCFDANAGAFEAIL----TPEDAVFSDELNHASIIDGIR 169 (417)
T ss_pred HHHHHHHHHHHHhC-C-CceEEeccccccchHHHHHhc----ChhhhhhccccccchhhhhhH
Confidence 33445555666533 2 333444444455555555554 677777766777777665443
No 453
>KOG1201|consensus
Probab=48.90 E-value=89 Score=22.72 Aligned_cols=56 Identities=7% Similarity=0.127 Sum_probs=35.4
Q ss_pred CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798 43 KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG 103 (110)
Q Consensus 43 ~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~ 103 (110)
+-|++|.|++..=..++.=+. ++|.++++-+++-.++....+..++.| ++...-+|
T Consensus 39 ~~vLITGgg~GlGr~ialefa----~rg~~~vl~Din~~~~~etv~~~~~~g-~~~~y~cd 94 (300)
T KOG1201|consen 39 EIVLITGGGSGLGRLIALEFA----KRGAKLVLWDINKQGNEETVKEIRKIG-EAKAYTCD 94 (300)
T ss_pred CEEEEeCCCchHHHHHHHHHH----HhCCeEEEEeccccchHHHHHHHHhcC-ceeEEEec
Confidence 345555555443333433333 788888888888888888888887666 55444443
No 454
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=48.72 E-value=1.1e+02 Score=22.82 Aligned_cols=39 Identities=18% Similarity=0.053 Sum_probs=26.7
Q ss_pred CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhH
Q psy17798 43 KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCV 83 (110)
Q Consensus 43 ~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~ 83 (110)
+.+.|+++++||+..+++... .+ ..+.+|+.-...|+..
T Consensus 102 ~~~~f~~sGseA~e~AlklAr-~~-tgr~~ii~~~~~yHG~ 140 (421)
T PRK09792 102 AKTAFFTTGAEAVENAVKIAR-AH-TGRPGVIAFSGGFHGR 140 (421)
T ss_pred ceEEEeCChHHHHHHHHHHHH-Hh-cCCCeEEEECCCcCCc
Confidence 689999999999998887553 22 3445676555444443
No 455
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=48.21 E-value=88 Score=21.49 Aligned_cols=58 Identities=10% Similarity=0.010 Sum_probs=35.0
Q ss_pred cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecC
Q psy17798 44 EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNP 102 (110)
Q Consensus 44 ~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~ 102 (110)
++++.+-..+.+..++.-+. ..+++|..++++..-..........+++.|+++..+..
T Consensus 181 D~Vvani~~~~~~~l~~~~~-~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~~ 238 (250)
T PRK00517 181 DVIVANILANPLLELAPDLA-RLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVLE 238 (250)
T ss_pred CEEEEcCcHHHHHHHHHHHH-HhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEEE
Confidence 56665544444433333332 23589999998865554545555666778988776544
No 456
>PRK08297 L-lysine aminotransferase; Provisional
Probab=47.72 E-value=55 Score=24.73 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=22.7
Q ss_pred HHHHHHHHhC-CCCCcEEEeCChHHHHHHHHHHh
Q psy17798 30 ARQEIATLIN-CDPKEIIFTSGATESNNIAVKGV 62 (110)
Q Consensus 30 ~R~~la~~l~-~~~~~i~~t~gat~a~~~i~~~l 62 (110)
+-+.|+++.. -+-+.|.|+++++||+..+++..
T Consensus 97 la~~l~~~~~p~~~~~v~f~~SGsEAve~AlKlA 130 (443)
T PRK08297 97 FVDTFARVLGDPELPHLFFVDGGALAVENALKVA 130 (443)
T ss_pred HHHHHHhhcCCCCCCEEEEeCchHHHHHHHHHHH
Confidence 3334444432 12368999999999999988765
No 457
>PLN02760 4-aminobutyrate:pyruvate transaminase
Probab=47.70 E-value=92 Score=24.09 Aligned_cols=55 Identities=22% Similarity=0.286 Sum_probs=31.2
Q ss_pred HHHHHHHHHhC-CCCCcEEEeCChHHHHHHHHHHhHHhh--c-c-CCCEEEEcCCCChhH
Q psy17798 29 DARQEIATLIN-CDPKEIIFTSGATESNNIAVKGVARFY--K-E-KKKHVITTQTEHKCV 83 (110)
Q Consensus 29 ~~R~~la~~l~-~~~~~i~~t~gat~a~~~i~~~l~~~~--~-~-~g~~vl~~~~e~ps~ 83 (110)
++-+.|.+.+. .+-+.+.|+++++||+..+++...... . . .+.+||...-.|+..
T Consensus 137 ~lae~L~~~~~~~~~~~v~f~~SGsEA~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~ 196 (504)
T PLN02760 137 DLAKELLEMFTARKMGKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGS 196 (504)
T ss_pred HHHHHHHhhcCCCCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCC
Confidence 33344444432 233579999999999999888653100 0 1 235666555444443
No 458
>PRK08329 threonine synthase; Validated
Probab=47.66 E-value=1.1e+02 Score=22.34 Aligned_cols=83 Identities=14% Similarity=0.186 Sum_probs=46.7
Q ss_pred hhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHH
Q psy17798 5 LTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVL 84 (110)
Q Consensus 5 ~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~ 84 (110)
+...+-||.. + ...|.+.-.+..+++. +. +.|+..+++-.+..++..+-.. .=.-.|+++...- .
T Consensus 76 ~K~E~~nPtG-S-fKdRga~~~i~~a~~~-----g~--~~vv~aSsGN~g~alA~~aa~~---G~~~~v~vp~~~~---~ 140 (347)
T PRK08329 76 FKLDYLQPTG-S-FKDRGTYVTVAKLKEE-----GI--NEVVIDSSGNAALSLALYSLSE---GIKVHVFVSYNAS---K 140 (347)
T ss_pred EEeCCCCCCc-C-CHHHHHHHHHHHHHHc-----CC--CEEEEECCCcHHHHHHHHHHHc---CCcEEEEECCCCh---H
Confidence 3445668873 4 3345555555555542 32 5787777766776666555431 2234566543221 2
Q ss_pred HHHHHHHhCCcEEEEecC
Q psy17798 85 DSCRILEGEGFNVLGSNP 102 (110)
Q Consensus 85 ~~~~~l~~~g~~v~~v~~ 102 (110)
.-...++..|++|+.++-
T Consensus 141 ~k~~~~~~~GA~v~~v~~ 158 (347)
T PRK08329 141 EKISLLSRLGAELHFVEG 158 (347)
T ss_pred HHHHHHHHcCCEEEEECC
Confidence 233444678999998864
No 459
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=47.62 E-value=98 Score=21.85 Aligned_cols=53 Identities=19% Similarity=0.240 Sum_probs=33.5
Q ss_pred CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhH--HHHHHHHHhCCcEEEEec
Q psy17798 43 KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCV--LDSCRILEGEGFNVLGSN 101 (110)
Q Consensus 43 ~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~--~~~~~~l~~~g~~v~~v~ 101 (110)
+++++|-|.+..+..++... +++.+|++.+ ..|.. ....+.|.+.|++++.++
T Consensus 87 ~dvILT~s~S~~v~~~l~~~-----~~~~~V~v~E-SrP~~eG~~~a~~L~~~GI~vtli~ 141 (253)
T PRK06372 87 DSVIGTISSSQVLKAFISSS-----EKIKSVYILE-SRPMLEGIDMAKLLVKSGIDVVLLT 141 (253)
T ss_pred CCEEEEeCCcHHHHHHHHhc-----CCCCEEEEec-CCCchHHHHHHHHHHHCCCCEEEEe
Confidence 46999988887777666432 3445676654 23332 234555667899988876
No 460
>PRK08638 threonine dehydratase; Validated
Probab=47.48 E-value=1.1e+02 Score=22.28 Aligned_cols=83 Identities=11% Similarity=0.040 Sum_probs=45.0
Q ss_pred hhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHH
Q psy17798 5 LTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVL 84 (110)
Q Consensus 5 ~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~ 84 (110)
+...+.||.. ++. -+.+...+..+.+.. ..+.|+-.+++..++.+.+.+-.. .=.-.|+++....+..
T Consensus 46 ~K~E~~nptG-S~K-dR~a~~~i~~~~~~~------~~~~vv~~SsGN~g~alA~~aa~~---G~~~~iv~p~~~~~~k- 113 (333)
T PRK08638 46 LKLENMQRTG-SFK-IRGAFNKLSSLTDAE------KRKGVVACSAGNHAQGVALSCALL---GIDGKVVMPKGAPKSK- 113 (333)
T ss_pred EEeccCCccC-CcH-HHHHHHHHHhccHHh------cCCeEEEeCCcHHHHHHHHHHHHc---CCCEEEEeCCCCcHHH-
Confidence 3445568874 332 233333333322211 124688888888887777766442 2234566654433332
Q ss_pred HHHHHHHhCCcEEEEec
Q psy17798 85 DSCRILEGEGFNVLGSN 101 (110)
Q Consensus 85 ~~~~~l~~~g~~v~~v~ 101 (110)
...++..|++|+.++
T Consensus 114 --~~~~~~~GA~V~~~~ 128 (333)
T PRK08638 114 --VAATCGYGAEVVLHG 128 (333)
T ss_pred --HHHHHHcCCEEEEEC
Confidence 334467899998875
No 461
>PRK01192 50S ribosomal protein L31e; Reviewed
Probab=47.47 E-value=32 Score=20.28 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHH
Q psy17798 18 AYGWESEKAVEDARQEIATLINCDPKEIIFTSGATE 53 (110)
Q Consensus 18 ~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~ 53 (110)
.+...+...+...|+.+++.+++++++|.+-+.--+
T Consensus 21 ~~~kRA~rAik~Ir~f~~k~mkt~~~~V~iD~~lN~ 56 (89)
T PRK01192 21 PRTKRADRAVKLVREFLARHFKADEDKVKIDPSINE 56 (89)
T ss_pred CccccCHHHHHHHHHHHHHHhCCCCCcEEEChHHHH
Confidence 344567788999999999999998899998776333
No 462
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=47.14 E-value=43 Score=17.54 Aligned_cols=24 Identities=13% Similarity=0.346 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcEE
Q psy17798 23 SEKAVEDARQEIATLINCDPKEII 46 (110)
Q Consensus 23 ~~~~~~~~R~~la~~l~~~~~~i~ 46 (110)
-.+.+.++-+.+++.+|++++.+.
T Consensus 17 K~~l~~~it~~l~~~lg~~~~~v~ 40 (63)
T TIGR00013 17 KRQLIEGVTEAMAETLGANLESIV 40 (63)
T ss_pred HHHHHHHHHHHHHHHhCCCcccEE
Confidence 345778888999999999887654
No 463
>PRK05883 acyl carrier protein; Validated
Probab=47.08 E-value=18 Score=21.12 Aligned_cols=28 Identities=7% Similarity=0.007 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEeCC
Q psy17798 23 SEKAVEDARQEIATLINCDPKEIIFTSG 50 (110)
Q Consensus 23 ~~~~~~~~R~~la~~l~~~~~~i~~t~g 50 (110)
.....+++++.+++.++.++++|--.++
T Consensus 12 ~~~I~~~l~~iia~~l~v~~~~I~~d~~ 39 (91)
T PRK05883 12 PSTVSATLLSILRDDLNVDLTRVTPDAR 39 (91)
T ss_pred HHHHHHHHHHHHHHHhCCChhhCCCCCc
Confidence 3457889999999999987776554443
No 464
>PRK05855 short chain dehydrogenase; Validated
Probab=47.06 E-value=1.1e+02 Score=23.21 Aligned_cols=57 Identities=9% Similarity=0.171 Sum_probs=31.4
Q ss_pred CcEEEeCChHHHHHH-HHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798 43 KEIIFTSGATESNNI-AVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG 103 (110)
Q Consensus 43 ~~i~~t~gat~a~~~-i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~ 103 (110)
+..++..|++.++-. +++.+. +.|.+|++..-..+........++..|.++..+++|
T Consensus 315 ~~~~lv~G~s~giG~~~a~~l~----~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 372 (582)
T PRK05855 315 GKLVVVTGAGSGIGRETALAFA----REGAEVVASDIDEAAAERTAELIRAAGAVAHAYRVD 372 (582)
T ss_pred CCEEEEECCcCHHHHHHHHHHH----HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcC
Confidence 345555555555544 444444 678788776554444333344444556666666665
No 465
>PRK06181 short chain dehydrogenase; Provisional
Probab=47.06 E-value=87 Score=21.10 Aligned_cols=9 Identities=0% Similarity=0.368 Sum_probs=4.0
Q ss_pred cEEEeCChH
Q psy17798 44 EIIFTSGAT 52 (110)
Q Consensus 44 ~i~~t~gat 52 (110)
+|+.+....
T Consensus 27 ~Vi~~~r~~ 35 (263)
T PRK06181 27 QLVLAARNE 35 (263)
T ss_pred EEEEEeCCH
Confidence 455444433
No 466
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=46.97 E-value=36 Score=19.13 Aligned_cols=37 Identities=19% Similarity=0.300 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHhC--CCCCcEEEeCChHHHHHHHHH
Q psy17798 22 ESEKAVEDARQEIATLIN--CDPKEIIFTSGATESNNIAVK 60 (110)
Q Consensus 22 ~~~~~~~~~R~~la~~l~--~~~~~i~~t~gat~a~~~i~~ 60 (110)
-++..++.+|+..- +| .+.++|+|+.-+..+..++..
T Consensus 22 IAt~Lld~ar~~~i--yG~~l~~~~iAFSqPT~~G~~fA~~ 60 (70)
T PF13880_consen 22 IATRLLDAARENFI--YGCVLPKNEIAFSQPTESGKKFAKK 60 (70)
T ss_pred HHHHHHHHHHHhcc--CceEechhheEecCCCHhHHHHHHH
Confidence 46678888888743 45 478999999999888765543
No 467
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=46.65 E-value=1.2e+02 Score=22.38 Aligned_cols=32 Identities=16% Similarity=0.249 Sum_probs=24.0
Q ss_pred HHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHh
Q psy17798 29 DARQEIATLINCDPKEIIFTSGATESNNIAVKGV 62 (110)
Q Consensus 29 ~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l 62 (110)
++-+.++++.+ .+.+.|++++++|+..+++..
T Consensus 86 ~l~~~l~~~~~--~~~~~~~~sGseA~e~a~kla 117 (403)
T PRK05093 86 RLAKKLIDATF--AERVFFANSGAEANEAAFKLA 117 (403)
T ss_pred HHHHHHHhhCC--CCEEEEeCchHHHHHHHHHHH
Confidence 55555665543 368999999999999988854
No 468
>PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2.3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B ....
Probab=46.09 E-value=55 Score=18.48 Aligned_cols=44 Identities=11% Similarity=0.076 Sum_probs=21.5
Q ss_pred HHHHHhCCCCCcEEEe------CChHHHHHHHHHHhHHhhccCCCEEEEc
Q psy17798 33 EIATLINCDPKEIIFT------SGATESNNIAVKGVARFYKEKKKHVITT 76 (110)
Q Consensus 33 ~la~~l~~~~~~i~~t------~gat~a~~~i~~~l~~~~~~~g~~vl~~ 76 (110)
.+++.++.+++.+..+ .+++...-.+...+....+++||+|++.
T Consensus 26 ~~~~~lgi~~~~~~~~~~~~Gn~~sa~~~~~L~~~~~~g~~~~Gd~vl~~ 75 (90)
T PF08541_consen 26 SIAKRLGIPPERFPDNLAEYGNTGSASIPINLADALEEGRIKPGDRVLLV 75 (90)
T ss_dssp HHHHHHTS-GGGBE-THHHH-B-GGGHHHHHHHHHHHTTSSCTTEEEEEE
T ss_pred HHHHHcCCcHHHHHHHHhccCcchhhhHHHHHHHHHHcCCCCCCCEEEEE
Confidence 4666778877655421 1222222233344432234788888764
No 469
>PRK05638 threonine synthase; Validated
Probab=45.88 E-value=1.3e+02 Score=22.75 Aligned_cols=83 Identities=13% Similarity=0.115 Sum_probs=46.7
Q ss_pred hhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHH
Q psy17798 5 LTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVL 84 (110)
Q Consensus 5 ~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~ 84 (110)
+...+.||.. + ..-|.+.-.+..+++. ..+.|+..+++-.+..+++.+-.. .=.-.|+++....+.
T Consensus 84 ~K~E~~nPtG-S-fKdR~a~~~i~~a~~~-------g~~~vv~aSsGN~g~alA~~aa~~---G~~~~i~vp~~~~~~-- 149 (442)
T PRK05638 84 IKDETRNPTG-S-FRDRLATVAVSYGLPY-------AANGFIVASDGNAAASVAAYSARA---GKEAFVVVPRKVDKG-- 149 (442)
T ss_pred EEeCCCCCCC-C-hHHHHHHHHHHHHHHc-------CCCEEEEeCCChHHHHHHHHHHHc---CCCEEEEEeCCCCHH--
Confidence 3445678863 3 4445555555554432 235677777777777766655431 223456665433222
Q ss_pred HHHHHHHhCCcEEEEecC
Q psy17798 85 DSCRILEGEGFNVLGSNP 102 (110)
Q Consensus 85 ~~~~~l~~~g~~v~~v~~ 102 (110)
-...++..|++|+.++-
T Consensus 150 -k~~~~~~~GA~vi~v~~ 166 (442)
T PRK05638 150 -KLIQMIAFGAKIIRYGE 166 (442)
T ss_pred -HHHHHHhcCcEEEEECC
Confidence 23444678999998863
No 470
>PRK06450 threonine synthase; Validated
Probab=45.80 E-value=1.2e+02 Score=22.19 Aligned_cols=84 Identities=17% Similarity=0.178 Sum_probs=50.6
Q ss_pred hhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhH
Q psy17798 4 YLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCV 83 (110)
Q Consensus 4 ~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~ 83 (110)
|+...+.||.. + ..-|.+.-.+..+++. + .+.|+..+++-.+..+...+-.. .-.-.|+++..-.+
T Consensus 68 ~~K~E~~nPTG-S-fKDRga~~~i~~a~~~-----g--~~~vv~aSsGN~g~slA~~aa~~---G~~~~i~vP~~~~~-- 133 (338)
T PRK06450 68 WFKLDFLNPTG-S-YKDRGSVTLISYLAEK-----G--IKQISEDSSGNAGASIAAYGAAA---GIEVKIFVPETASG-- 133 (338)
T ss_pred EEEecCCCCcC-C-CHHHHHHHHHHHHHHc-----C--CCEEEEECCcHHHHHHHHHHHHc---CCCEEEEEcCCCCH--
Confidence 34556779974 4 4456666666666652 3 35788888777777666655431 23346666543222
Q ss_pred HHHHHHHHhCCcEEEEecC
Q psy17798 84 LDSCRILEGEGFNVLGSNP 102 (110)
Q Consensus 84 ~~~~~~l~~~g~~v~~v~~ 102 (110)
.-...++.+|++|+.++-
T Consensus 134 -~k~~~i~~~GA~vi~v~~ 151 (338)
T PRK06450 134 -GKLKQIESYGAEVVRVRG 151 (338)
T ss_pred -HHHHHHHHcCCEEEEECC
Confidence 233445678999998864
No 471
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=45.35 E-value=89 Score=20.71 Aligned_cols=10 Identities=10% Similarity=0.149 Sum_probs=4.2
Q ss_pred cEEEeCChHH
Q psy17798 44 EIIFTSGATE 53 (110)
Q Consensus 44 ~i~~t~gat~ 53 (110)
+|+++.-..+
T Consensus 33 ~Vi~~~r~~~ 42 (239)
T PRK07666 33 NVGLLARTEE 42 (239)
T ss_pred EEEEEeCCHH
Confidence 4444443333
No 472
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=45.22 E-value=1.1e+02 Score=21.68 Aligned_cols=85 Identities=9% Similarity=0.107 Sum_probs=46.1
Q ss_pred hhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCC-CC-CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChh
Q psy17798 5 LTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINC-DP-KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKC 82 (110)
Q Consensus 5 ~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~-~~-~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps 82 (110)
+...+.||.. + ...|.+...+..+.+ + +. .+ +.|+-.+++..+..++..+-.. .=.-.|+++....+.
T Consensus 27 ~K~E~~nptG-S-~K~R~a~~~v~~a~~---~--g~~~~g~~vv~aSsGN~g~alA~~a~~~---G~~~~i~~p~~~~~~ 96 (290)
T TIGR01138 27 LKLEGNNPAG-S-VKDRPALSMIVEAEK---R--GEIKPGDVLIEATSGNTGIALAMIAALK---GYRMKLLMPDNMSQE 96 (290)
T ss_pred EEEccCCCCc-c-HHHHHHHHHHHHHHH---c--CCCCCCCEEEEECCChHHHHHHHHHHHc---CCeEEEEECCCCCHH
Confidence 3344568853 3 333444444433332 2 32 22 4577778877777776655331 223456665443333
Q ss_pred HHHHHHHHHhCCcEEEEecC
Q psy17798 83 VLDSCRILEGEGFNVLGSNP 102 (110)
Q Consensus 83 ~~~~~~~l~~~g~~v~~v~~ 102 (110)
.. ..++..|++|+.++.
T Consensus 97 k~---~~~~~~GA~v~~v~~ 113 (290)
T TIGR01138 97 RK---AAMRAYGAELILVTK 113 (290)
T ss_pred HH---HHHHHcCCEEEEeCC
Confidence 32 345678999998875
No 473
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=44.56 E-value=1.2e+02 Score=21.98 Aligned_cols=78 Identities=14% Similarity=0.091 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCcEEEEecCC
Q psy17798 26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFNVLGSNPG 103 (110)
Q Consensus 26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~v~~v~~~ 103 (110)
.+....+.+...+.+.|++++++-.++.+-+.+.++......-+-+.+|++-++..+.......+ ...+..+.++-.-
T Consensus 217 eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~~~~~~~giIlTKlD~t~~~G~~l~~~~~~~~Pi~~v~~G 295 (318)
T PRK10416 217 ELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFHEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVG 295 (318)
T ss_pred HHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHHhhCCCCEEEEECCCCCCCccHHHHHHHHHCCCEEEEeCC
Confidence 44444444444555678887777666655555555433210123467888887776665544333 6678888888753
No 474
>PLN03013 cysteine synthase
Probab=44.54 E-value=1.4e+02 Score=22.79 Aligned_cols=87 Identities=13% Similarity=0.120 Sum_probs=48.3
Q ss_pred hhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCC-CCC--cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCC
Q psy17798 4 YLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINC-DPK--EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEH 80 (110)
Q Consensus 4 ~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~-~~~--~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ 80 (110)
|+.-.+-||.. + ..-|.+...+..+.+ .+. .+. .|+-.+++-.++.++..+-.. .=.-.|++++...
T Consensus 141 y~KlE~lNPtG-S-fKdR~A~~~l~~a~~-----~G~l~pG~~~VVeaSSGN~G~ALA~~a~~~---G~~~~VvvP~~~s 210 (429)
T PLN03013 141 AAKLEIMEPCC-S-VKDRIGYSMVTDAEQ-----KGFISPGKSVLVEPTSGNTGIGLAFIAASR---GYRLILTMPASMS 210 (429)
T ss_pred EEEeccCCCcc-c-cHHHHHHHHHHHHHH-----cCCcCCCCcEEEEECCcHHHHHHHHHHHHc---CCCEEEEECCCCc
Confidence 34455678874 3 333444444544332 232 333 477777777777776655441 2233566554333
Q ss_pred hhHHHHHHHHHhCCcEEEEecCC
Q psy17798 81 KCVLDSCRILEGEGFNVLGSNPG 103 (110)
Q Consensus 81 ps~~~~~~~l~~~g~~v~~v~~~ 103 (110)
+ .-...++..|++|+.++.+
T Consensus 211 ~---~K~~~ira~GAeVi~v~~~ 230 (429)
T PLN03013 211 M---ERRVLLKAFGAELVLTDPA 230 (429)
T ss_pred H---HHHHHHHHcCCEEEEECCC
Confidence 3 2334456789999988754
No 475
>PRK08339 short chain dehydrogenase; Provisional
Probab=44.51 E-value=1e+02 Score=21.08 Aligned_cols=9 Identities=22% Similarity=0.139 Sum_probs=4.1
Q ss_pred cCCCEEEEc
Q psy17798 68 EKKKHVITT 76 (110)
Q Consensus 68 ~~g~~vl~~ 76 (110)
+.|.+|++.
T Consensus 30 ~~G~~V~~~ 38 (263)
T PRK08339 30 RAGADVILL 38 (263)
T ss_pred HCCCEEEEE
Confidence 344454443
No 476
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=44.25 E-value=87 Score=20.26 Aligned_cols=24 Identities=21% Similarity=0.021 Sum_probs=13.9
Q ss_pred ChhHHHHHHHHHhCCcEEEEecCC
Q psy17798 80 HKCVLDSCRILEGEGFNVLGSNPG 103 (110)
Q Consensus 80 ~ps~~~~~~~l~~~g~~v~~v~~~ 103 (110)
.+.....+..++..|++|..+.+|
T Consensus 38 ~~~~~~~i~~l~~~g~~v~~~~~D 61 (181)
T PF08659_consen 38 SAEAEAAIRELESAGARVEYVQCD 61 (181)
T ss_dssp STTHHHHHHHHHHTT-EEEEEE--
T ss_pred cHHHHHHHHHHHhCCCceeeeccC
Confidence 344455666677778888877766
No 477
>PRK05854 short chain dehydrogenase; Provisional
Probab=44.13 E-value=1.1e+02 Score=21.57 Aligned_cols=9 Identities=22% Similarity=0.176 Sum_probs=4.3
Q ss_pred cCCCEEEEc
Q psy17798 68 EKKKHVITT 76 (110)
Q Consensus 68 ~~g~~vl~~ 76 (110)
+.|-+|++.
T Consensus 36 ~~G~~Vil~ 44 (313)
T PRK05854 36 AAGAEVILP 44 (313)
T ss_pred HCCCEEEEE
Confidence 445555443
No 478
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=43.32 E-value=62 Score=21.41 Aligned_cols=37 Identities=27% Similarity=0.286 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHhCCCC-CcEEEeCChHHHHHHHHHH
Q psy17798 25 KAVEDARQEIATLINCDP-KEIIFTSGATESNNIAVKG 61 (110)
Q Consensus 25 ~~~~~~R~~la~~l~~~~-~~i~~t~gat~a~~~i~~~ 61 (110)
..+..++..+.++....| -.|++|..+..+...+...
T Consensus 32 GE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~ 69 (186)
T PF04413_consen 32 GEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKL 69 (186)
T ss_dssp HHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHh
Confidence 356666777777666544 4788888877777766444
No 479
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=43.04 E-value=52 Score=23.09 Aligned_cols=41 Identities=10% Similarity=-0.053 Sum_probs=28.4
Q ss_pred ccCCCEEEEcCCCChhHHHHHHHH-HhCCcEEEEecCCCCcc
Q psy17798 67 KEKKKHVITTQTEHKCVLDSCRIL-EGEGFNVLGSNPGQGGN 107 (110)
Q Consensus 67 ~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~v~~v~~~~~G~ 107 (110)
+.+|..|++.+..+|+...++..+ ++.|+.....++|..|.
T Consensus 202 l~~GGiIi~DDY~~~gcr~AvdeF~~~~gi~~~l~~id~~~v 243 (248)
T PF05711_consen 202 LSPGGIIIFDDYGHPGCRKAVDEFRAEHGITDPLHPIDWTGV 243 (248)
T ss_dssp EEEEEEEEESSTTTHHHHHHHHHHHHHTT--S--EE-SSS-E
T ss_pred cCCCeEEEEeCCCChHHHHHHHHHHHHcCCCCccEEecCceE
Confidence 468999999999888888888887 67888776667776653
No 480
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=42.68 E-value=38 Score=21.95 Aligned_cols=28 Identities=18% Similarity=0.355 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCChH
Q psy17798 25 KAVEDARQEIATLINCDPKEIIFTSGAT 52 (110)
Q Consensus 25 ~~~~~~R~~la~~l~~~~~~i~~t~gat 52 (110)
+..+..++.+.+.+.....++++|+|++
T Consensus 46 Dd~~~i~~~l~~~~~~~~~DlVIttGGt 73 (163)
T TIGR02667 46 DDIYQIRAQVSAWIADPDVQVILITGGT 73 (163)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 3455566666665533345677776654
No 481
>TIGR03251 LAT_fam L-lysine 6-transaminase. Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.
Probab=41.88 E-value=75 Score=23.84 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=17.9
Q ss_pred CCcEEEeCChHHHHHHHHHHh
Q psy17798 42 PKEIIFTSGATESNNIAVKGV 62 (110)
Q Consensus 42 ~~~i~~t~gat~a~~~i~~~l 62 (110)
-+.+.|+++++||+..+++..
T Consensus 103 ~~~v~f~~sGsEAve~AlklA 123 (431)
T TIGR03251 103 LPHLFFIEGGALAVENALKTA 123 (431)
T ss_pred cCEEEEeCCcHHHHHHHHHHH
Confidence 368999999999999888754
No 482
>PRK08088 4-aminobutyrate aminotransferase; Validated
Probab=41.85 E-value=1.5e+02 Score=22.15 Aligned_cols=40 Identities=20% Similarity=0.114 Sum_probs=23.6
Q ss_pred CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHH
Q psy17798 43 KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVL 84 (110)
Q Consensus 43 ~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~ 84 (110)
+.++|++++++|+..+++... .. ..+..||.-...|+...
T Consensus 103 ~~~~f~~sGsea~e~Alklar-~~-~~r~~iv~~~~~yHG~~ 142 (425)
T PRK08088 103 KKTLLVTTGSEAVENAVKIAR-AA-TKRSGVIAFTGAYHGRT 142 (425)
T ss_pred CEEEEeCCcHHHHHHHHHHHH-HH-hCCCeEEEECCccCCcc
Confidence 578888888898877776543 22 23344544344444443
No 483
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=41.62 E-value=1.1e+02 Score=20.59 Aligned_cols=7 Identities=14% Similarity=0.060 Sum_probs=2.8
Q ss_pred CCCEEEE
Q psy17798 69 KKKHVIT 75 (110)
Q Consensus 69 ~g~~vl~ 75 (110)
.|.+|++
T Consensus 25 ~g~~vi~ 31 (259)
T PRK12384 25 EGYRVAV 31 (259)
T ss_pred CCCEEEE
Confidence 3444433
No 484
>PRK06381 threonine synthase; Validated
Probab=41.46 E-value=1.3e+02 Score=21.46 Aligned_cols=84 Identities=17% Similarity=0.107 Sum_probs=44.3
Q ss_pred hhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhH
Q psy17798 4 YLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCV 83 (110)
Q Consensus 4 ~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~ 83 (110)
|+.....||.. + ..-|.+...+..+++. + .+.|+..+++-.++.+...+-.. .=.-.|+++...-+
T Consensus 34 ~~K~E~~nptG-S-~K~R~a~~~l~~a~~~-----g--~~~lv~aSsGN~g~alA~~aa~~---G~~~~ivvp~~~~~-- 99 (319)
T PRK06381 34 YLKFEGANPTG-T-QKDRIAEAHVRRAMRL-----G--YSGITVGTCGNYGASIAYFARLY---GLKAVIFIPRSYSN-- 99 (319)
T ss_pred EEEecCCCCcc-C-cHHHHHHHHHHHHHHc-----C--CCEEEEeCCcHHHHHHHHHHHHc---CCcEEEEECCCCCH--
Confidence 34445668863 4 3335544444444332 2 25676666666666655544331 22235555543222
Q ss_pred HHHHHHHHhCCcEEEEecC
Q psy17798 84 LDSCRILEGEGFNVLGSNP 102 (110)
Q Consensus 84 ~~~~~~l~~~g~~v~~v~~ 102 (110)
.-.+.++..|++|+.++-
T Consensus 100 -~~~~~l~~~GA~V~~~~~ 117 (319)
T PRK06381 100 -SRVKEMEKYGAEIIYVDG 117 (319)
T ss_pred -HHHHHHHHcCCEEEEcCC
Confidence 223455778999998874
No 485
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=41.14 E-value=1.3e+02 Score=21.23 Aligned_cols=36 Identities=8% Similarity=0.044 Sum_probs=17.2
Q ss_pred cCCCEEEEcCCCC-hhHHHHHHHHHhCCcEEEEecCC
Q psy17798 68 EKKKHVITTQTEH-KCVLDSCRILEGEGFNVLGSNPG 103 (110)
Q Consensus 68 ~~g~~vl~~~~e~-ps~~~~~~~l~~~g~~v~~v~~~ 103 (110)
+.|.+|++.+... .........++..|.++..++.|
T Consensus 34 ~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~D 70 (306)
T PRK07792 34 RLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGD 70 (306)
T ss_pred HCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCC
Confidence 5666666644322 22222233334446666666554
No 486
>PF09581 Spore_III_AF: Stage III sporulation protein AF (Spore_III_AF); InterPro: IPR014245 This family represents the stage III sporulation protein AF (SpoIIIAF) of the bacterial endospore formation program, which exists in some but not all members of the Firmicutes (formerly called low-GC Gram-positives). The C-terminal region of these proteins is poorly conserved.
Probab=40.94 E-value=29 Score=22.72 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcEEE
Q psy17798 23 SEKAVEDARQEIATLINCDPKEIIF 47 (110)
Q Consensus 23 ~~~~~~~~R~~la~~l~~~~~~i~~ 47 (110)
......+.|+.+|+++|.++++|-+
T Consensus 162 ~~~~~~~i~~~la~~~~i~~~~I~V 186 (188)
T PF09581_consen 162 DSEEEEEIKQYLADFYGISPEQIKV 186 (188)
T ss_pred chHHHHHHHHHHHHHhCCCHHHeEE
Confidence 4567889999999999999998865
No 487
>PRK10358 putative rRNA methylase; Provisional
Probab=40.93 E-value=81 Score=20.33 Aligned_cols=28 Identities=14% Similarity=0.069 Sum_probs=14.5
Q ss_pred EEEcCCCChhHHHHHHHH-HhCCcEEEEe
Q psy17798 73 VITTQTEHKCVLDSCRIL-EGEGFNVLGS 100 (110)
Q Consensus 73 vl~~~~e~ps~~~~~~~l-~~~g~~v~~v 100 (110)
|++-..++|.+....-+. ...|++.+.+
T Consensus 4 ivL~~~~dPgNlGti~Rta~a~G~~~viv 32 (157)
T PRK10358 4 IVLFEPEIPPNTGNIIRLCANTGFRLHII 32 (157)
T ss_pred EEEeCCCCcChHHHHHHHHHHhCCEEEEE
Confidence 444555555555554444 4455555554
No 488
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=40.49 E-value=5.5 Score=21.08 Aligned_cols=15 Identities=40% Similarity=0.955 Sum_probs=0.0
Q ss_pred HHHHHHhCCCCCcEE
Q psy17798 32 QEIATLINCDPKEII 46 (110)
Q Consensus 32 ~~la~~l~~~~~~i~ 46 (110)
..||++|++++++++
T Consensus 44 ~~ia~~l~~~~~el~ 58 (63)
T PF13443_consen 44 EKIAKALNCSPEELF 58 (63)
T ss_dssp HHHHHHHT--HHHCT
T ss_pred HHHHHHcCCCHHHHh
No 489
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=40.36 E-value=1.2e+02 Score=20.61 Aligned_cols=88 Identities=17% Similarity=0.110 Sum_probs=0.0
Q ss_pred hhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhH
Q psy17798 4 YLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCV 83 (110)
Q Consensus 4 ~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~ 83 (110)
|+...+.||. .....+.+.-.+..+++.-.. +...|+..+++..+..++..+-.. .-.-.|+++....+..
T Consensus 18 ~~K~e~~~pt--gS~K~R~a~~~l~~a~~~g~~----~~~~vv~~ssGN~g~alA~~a~~~---g~~~~v~~p~~~~~~~ 88 (244)
T cd00640 18 YLKLEFLNPT--GSFKDRGALNLILLAEEEGKL----PKGVIIESTGGNTGIALAAAAARL---GLKCTIVMPEGASPEK 88 (244)
T ss_pred EEEecccCCc--CCcHHHHHHHHHHHHHHcCCC----CCCEEEEeCCcHHHHHHHHHHHHc---CCCEEEEECCCCCHHH
Q ss_pred HHHHHHHHhCCcEEEEecCC
Q psy17798 84 LDSCRILEGEGFNVLGSNPG 103 (110)
Q Consensus 84 ~~~~~~l~~~g~~v~~v~~~ 103 (110)
....+.+ |++|..++-+
T Consensus 89 ~~~~~~~---Ga~v~~~~~~ 105 (244)
T cd00640 89 VAQMRAL---GAEVVLVPGD 105 (244)
T ss_pred HHHHHHC---CCEEEEECCC
No 490
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=40.27 E-value=1.2e+02 Score=20.55 Aligned_cols=63 Identities=13% Similarity=0.179 Sum_probs=0.0
Q ss_pred HhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCC-CChhHHHHHHHHHhCCcEEEEecCC
Q psy17798 37 LINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQT-EHKCVLDSCRILEGEGFNVLGSNPG 103 (110)
Q Consensus 37 ~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~-e~ps~~~~~~~l~~~g~~v~~v~~~ 103 (110)
+.......+++|.++...=..+++.+. +.|..|++... +.+........++..+.++..+++|
T Consensus 2 ~~~~~~k~~lItGa~~gIG~~ia~~l~----~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~D 65 (261)
T PRK08936 2 YSDLEGKVVVITGGSTGLGRAMAVRFG----KEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGD 65 (261)
T ss_pred ccCCCCCEEEEeCCCChHHHHHHHHHH----HCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEec
No 491
>PRK06940 short chain dehydrogenase; Provisional
Probab=40.09 E-value=1.2e+02 Score=20.83 Aligned_cols=56 Identities=20% Similarity=0.273 Sum_probs=0.0
Q ss_pred CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798 43 KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG 103 (110)
Q Consensus 43 ~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~ 103 (110)
+.+++..|++ ++-..+--.. ..|.+|++..............++..|.++..++.|
T Consensus 2 ~k~~lItGa~-gIG~~la~~l----~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D 57 (275)
T PRK06940 2 KEVVVVIGAG-GIGQAIARRV----GAGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVD 57 (275)
T ss_pred CCEEEEECCC-hHHHHHHHHH----hCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEee
No 492
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=40.03 E-value=64 Score=19.41 Aligned_cols=25 Identities=4% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEe
Q psy17798 24 EKAVEDARQEIATLINCDPKEIIFT 48 (110)
Q Consensus 24 ~~~~~~~R~~la~~l~~~~~~i~~t 48 (110)
.+...+.-+.+++-+|++|++|.+.
T Consensus 75 ~~l~~~i~~~l~~~lgi~~~rv~I~ 99 (116)
T PTZ00397 75 SSIAAAITKILASHLKVKSERVYIE 99 (116)
T ss_pred HHHHHHHHHHHHHHhCcCcccEEEE
No 493
>KOG1201|consensus
Probab=39.77 E-value=67 Score=23.32 Aligned_cols=42 Identities=14% Similarity=-0.047 Sum_probs=0.0
Q ss_pred CCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCCccccC
Q psy17798 69 KKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQGGNFLT 110 (110)
Q Consensus 69 ~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~G~~~~ 110 (110)
.|..|+++..-|.=-......+.++|+.++.|.++++|...|
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~et 78 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEET 78 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHH
No 494
>PRK09072 short chain dehydrogenase; Provisional
Probab=39.66 E-value=1.2e+02 Score=20.51 Aligned_cols=61 Identities=7% Similarity=-0.019 Sum_probs=0.0
Q ss_pred hCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798 38 INCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG 103 (110)
Q Consensus 38 l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~ 103 (110)
+..+...+++|.++...=..+++.+. +.|.+|++..-...........+ ..+.++.+++.|
T Consensus 1 m~~~~~~vlItG~s~~iG~~ia~~l~----~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~D 61 (263)
T PRK09072 1 MDLKDKRVLLTGASGGIGQALAEALA----AAGARLLLVGRNAEKLEALAARL-PYPGRHRWVVAD 61 (263)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHH----HCCCEEEEEECCHHHHHHHHHHH-hcCCceEEEEcc
No 495
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=39.47 E-value=74 Score=21.17 Aligned_cols=68 Identities=16% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecC
Q psy17798 28 EDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNP 102 (110)
Q Consensus 28 ~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~ 102 (110)
+..++.+.++ |.+++-+--..+.++++-..+.... .+++|++...+... ......|+..|++|..+++
T Consensus 81 ~~Ta~~l~~~-G~~~~~~~~~~~~s~~L~~~l~~~~-----~~~~vl~~~g~~~~-~~l~~~L~~~g~~v~~~~v 148 (231)
T PF02602_consen 81 PKTAEALREY-GFQPDFVPSSEGSSEGLAELLKEQL-----RGKRVLILRGEGGR-PDLPEKLREAGIEVTEVIV 148 (231)
T ss_dssp HHHHHHHHHT-T-EECEE-TTSSSHHHHHGGHHHCC-----TTEEEEEEESSSSC-HHHHHHHHHTTEEEEEEEC
T ss_pred HHHHHHHHHc-CCCccccCCCCCCHHHHHHHHHhhC-----CCCeEEEEcCCCcc-HHHHHHHHHCCCeEEEEEE
No 496
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=39.15 E-value=1.2e+02 Score=20.39 Aligned_cols=58 Identities=16% Similarity=0.127 Sum_probs=0.0
Q ss_pred CCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798 41 DPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG 103 (110)
Q Consensus 41 ~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~ 103 (110)
+...+++|.++...=..++..|. ++|.+|++.... +........+...|.++..++.|
T Consensus 7 ~~k~vlVtGas~gIG~~la~~l~----~~G~~v~~~~r~-~~~~~~~~~~~~~~~~~~~~~~D 64 (260)
T PRK12823 7 AGKVVVVTGAAQGIGRGVALRAA----AEGARVVLVDRS-ELVHEVAAELRAAGGEALALTAD 64 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHH----HCCCEEEEEeCc-hHHHHHHHHHHhcCCeEEEEEEe
No 497
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=38.63 E-value=1.8e+02 Score=22.17 Aligned_cols=90 Identities=14% Similarity=0.069 Sum_probs=0.0
Q ss_pred hhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEE-eCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChh
Q psy17798 4 YLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIF-TSGATESNNIAVKGVARFYKEKKKHVITTQTEHKC 82 (110)
Q Consensus 4 ~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~-t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps 82 (110)
|+.....||.. +.+....+..+.....+ ....++. |+++..+..+++.+-.. .=.-+|+++...+..
T Consensus 97 y~K~E~~nPtG-----S~K~R~A~~~a~~a~~~----G~~~~vtetgsGN~G~alA~aaa~~---Gl~~~V~mp~~s~~~ 164 (427)
T PRK12391 97 YYKYEGVSPTG-----SHKPNTAVAQAYYNKKE----GIKRLTTETGAGQWGSALALACALF---GLECTVFMVRVSYEQ 164 (427)
T ss_pred EEEEcCCCCCC-----ChHHHHHHHHHHHHHHC----CCCEEEEccCchHHHHHHHHHHHHc---CCcEEEEEecCCccc
Q ss_pred HHHHHHHHHhCCcEEEEecCCCC
Q psy17798 83 VLDSCRILEGEGFNVLGSNPGQG 105 (110)
Q Consensus 83 ~~~~~~~l~~~g~~v~~v~~~~~ 105 (110)
-..-...++..|++|+.+|-+.+
T Consensus 165 k~~r~~~mr~~GA~Vi~~~~~~~ 187 (427)
T PRK12391 165 KPYRRSLMETYGAEVIPSPSDLT 187 (427)
T ss_pred CHHHHHHHHHCCCEEEEECCchh
No 498
>KOG2040|consensus
Probab=38.52 E-value=54 Score=26.84 Aligned_cols=95 Identities=17% Similarity=0.138 Sum_probs=0.0
Q ss_pred hhhhcCCCCCcCChHHHHHHHHHHHHH--------HHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEc
Q psy17798 5 LTNAYGNPHSRTHAYGWESEKAVEDAR--------QEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITT 76 (110)
Q Consensus 5 ~~~~~~n~~~~~~~~~~~~~~~~~~~R--------~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~ 76 (110)
+++.+.||+ ++..-...+..+.+-| -.|+++-|.+-.+--+---+|.|-..++.+..- .++.++++.
T Consensus 137 ~RNilenp~--W~TqYTPYQ~EIsQGRLEsllNyQTmi~dlTGL~~aNASLLDEgTAaaEAm~l~~~~---~krkk~vvd 211 (1001)
T KOG2040|consen 137 LRNILENPG--WYTQYTPYQAEISQGRLESLLNYQTMITDLTGLPMANASLLDEGTAAAEAMALCNRI---NKRKKFVVD 211 (1001)
T ss_pred HHHhhhCCc--ceeccCCCchhhhhhhHHHHhhhHHhhhhccCCcccchhhhccchhHHHHHHHHHhh---cccceEEec
Q ss_pred CCCChhHHHHHHHH-HhCCcEEEEecCCC
Q psy17798 77 QTEHKCVLDSCRIL-EGEGFNVLGSNPGQ 104 (110)
Q Consensus 77 ~~e~ps~~~~~~~l-~~~g~~v~~v~~~~ 104 (110)
.-.||-.+...+.. +..|++++..+..+
T Consensus 212 ~~~hpqtlsV~~TRa~~~~i~v~~~~~~~ 240 (1001)
T KOG2040|consen 212 SNCHPQTLSVVKTRAKGFGIKVVVSDIKE 240 (1001)
T ss_pred CCCCcchhhhhhccccccceeEEecCHHH
No 499
>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=38.31 E-value=1.4e+02 Score=22.96 Aligned_cols=54 Identities=6% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhCC-----CCCcEEEeCChHHHHHHHHHHhHHhhccC--------CCEEEEcCCCChh
Q psy17798 25 KAVEDARQEIATLINC-----DPKEIIFTSGATESNNIAVKGVARFYKEK--------KKHVITTQTEHKC 82 (110)
Q Consensus 25 ~~~~~~R~~la~~l~~-----~~~~i~~t~gat~a~~~i~~~l~~~~~~~--------g~~vl~~~~e~ps 82 (110)
+...++-+.+++.+.. +-+.|.|+++++||+..+++... .- +.+||.-...|+.
T Consensus 107 ~~~~~lae~L~~~~p~~~~~~~~~~v~f~~sGSEAvE~AlKlAr----~~~~~~g~~~r~~ii~~~~syHG 173 (472)
T PRK08742 107 EPAVQLAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVALKMAF----HYFHNRGEHRRTRFIALENGYHG 173 (472)
T ss_pred HHHHHHHHHHHHhCCCcccCCCCCEEEEeCCchHHHHHHHHHHH----HHHHhcCCCCCcEEEEECCCcCC
No 500
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=38.15 E-value=22 Score=26.41 Aligned_cols=34 Identities=12% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHH
Q psy17798 22 ESEKAVEDARQEIATLINCDPKEIIFTSGATESN 55 (110)
Q Consensus 22 ~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~ 55 (110)
+..+..++.|+.|++.|++++++|-+..-++|.+
T Consensus 321 k~~~~~~~~~~~~~~~l~~~~~~v~~ka~t~e~l 354 (378)
T PRK09382 321 KIGPHKQAMRENLAEILGIPKDRVSVKATTTEKL 354 (378)
T ss_pred cchHHHHHHHHHHHHHhCCCcceEEEEEecCCCC
Done!